Query 005817
Match_columns 676
No_of_seqs 325 out of 1789
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 14:11:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2396 HAT (Half-A-TPR) repea 100.0 2.5E-70 5.5E-75 550.6 52.4 541 42-675 1-550 (568)
2 KOG1915 Cell cycle control pro 100.0 8.5E-57 1.8E-61 447.8 46.7 490 41-673 14-525 (677)
3 KOG1915 Cell cycle control pro 100.0 1.3E-45 2.8E-50 368.0 47.9 496 68-672 83-613 (677)
4 KOG2047 mRNA splicing factor [ 100.0 1.9E-46 4.2E-51 386.1 41.6 500 77-673 12-712 (835)
5 KOG0495 HAT repeat protein [RN 100.0 1.1E-38 2.3E-43 329.3 47.0 547 56-672 249-868 (913)
6 COG5191 Uncharacterized conser 100.0 5.5E-41 1.2E-45 318.7 14.0 196 42-247 1-197 (435)
7 KOG0495 HAT repeat protein [RN 100.0 2.6E-32 5.5E-37 282.3 43.8 444 132-672 259-770 (913)
8 KOG2047 mRNA splicing factor [ 99.9 3.7E-24 8E-29 222.0 40.8 524 74-644 42-717 (835)
9 KOG1914 mRNA cleavage and poly 99.9 1.6E-22 3.5E-27 206.5 38.7 434 82-673 10-490 (656)
10 KOG1914 mRNA cleavage and poly 99.9 3.5E-19 7.6E-24 182.3 42.2 426 68-652 29-503 (656)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 2.9E-18 6.3E-23 204.2 52.7 439 139-673 446-889 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 6.7E-18 1.4E-22 201.1 52.4 416 139-649 480-899 (899)
13 PF08640 U3_assoc_6: U3 small 99.8 2.6E-21 5.5E-26 154.1 8.0 83 50-143 1-83 (83)
14 KOG4626 O-linked N-acetylgluco 99.8 4.2E-17 9E-22 169.2 29.4 379 148-655 106-490 (966)
15 PRK11447 cellulose synthase su 99.8 3E-14 6.5E-19 172.9 56.2 528 38-670 20-686 (1157)
16 COG5107 RNA14 Pre-mRNA 3'-end 99.8 5.8E-16 1.2E-20 155.4 33.4 444 83-674 33-521 (660)
17 PRK11447 cellulose synthase su 99.8 2.5E-14 5.4E-19 173.6 52.3 452 140-672 163-728 (1157)
18 TIGR00990 3a0801s09 mitochondr 99.8 2.4E-14 5.2E-19 163.0 48.3 423 139-653 142-574 (615)
19 KOG1070 rRNA processing protei 99.8 5E-17 1.1E-21 181.8 24.0 237 351-674 1445-1690(1710)
20 KOG1258 mRNA processing protei 99.8 1.3E-14 2.7E-19 152.7 39.9 385 138-630 59-490 (577)
21 PRK15174 Vi polysaccharide exp 99.7 3.1E-14 6.7E-19 162.0 40.6 285 140-538 58-349 (656)
22 KOG4626 O-linked N-acetylgluco 99.7 8.8E-15 1.9E-19 152.2 32.3 362 138-619 130-494 (966)
23 KOG1070 rRNA processing protei 99.7 1.1E-15 2.5E-20 171.2 26.6 233 177-512 1444-1686(1710)
24 PRK10049 pgaA outer membrane p 99.7 1.8E-13 3.9E-18 159.0 46.1 405 140-664 31-470 (765)
25 TIGR00990 3a0801s09 mitochondr 99.7 4.7E-13 1E-17 152.5 46.5 412 165-672 134-559 (615)
26 PRK15174 Vi polysaccharide exp 99.7 1E-13 2.2E-18 157.8 40.7 343 170-652 54-405 (656)
27 KOG0128 RNA-binding protein SA 99.7 2.3E-14 5.1E-19 154.3 31.5 423 146-673 103-552 (881)
28 PRK10049 pgaA outer membrane p 99.7 2.1E-12 4.5E-17 150.1 44.1 405 152-672 9-444 (765)
29 COG5107 RNA14 Pre-mRNA 3'-end 99.6 2.1E-11 4.6E-16 123.0 38.9 425 75-652 59-533 (660)
30 KOG1258 mRNA processing protei 99.6 9.4E-12 2E-16 131.3 35.1 410 146-671 20-491 (577)
31 KOG2396 HAT (Half-A-TPR) repea 99.5 5.8E-10 1.3E-14 114.7 43.3 477 41-651 50-560 (568)
32 KOG2002 TPR-containing nuclear 99.5 5.2E-10 1.1E-14 123.2 42.4 268 139-507 109-386 (1018)
33 PRK11788 tetratricopeptide rep 99.5 5.2E-11 1.1E-15 128.2 33.6 259 140-502 51-321 (389)
34 PF13429 TPR_15: Tetratricopep 99.5 1.2E-13 2.7E-18 141.4 11.9 262 159-535 9-276 (280)
35 KOG2002 TPR-containing nuclear 99.5 7E-10 1.5E-14 122.2 41.0 407 140-667 146-576 (1018)
36 PF13429 TPR_15: Tetratricopep 99.4 2.5E-12 5.5E-17 131.7 15.2 246 140-489 24-275 (280)
37 PLN03218 maturation of RBCL 1; 99.4 2.8E-08 6E-13 117.4 48.1 70 442-511 628-698 (1060)
38 PRK09782 bacteriophage N4 rece 99.4 4.7E-09 1E-13 123.0 41.4 374 173-652 358-742 (987)
39 PRK11788 tetratricopeptide rep 99.4 2.1E-09 4.6E-14 115.6 35.0 258 173-540 51-315 (389)
40 PRK09782 bacteriophage N4 rece 99.4 1.1E-09 2.4E-14 128.2 33.8 279 142-536 459-740 (987)
41 PLN03081 pentatricopeptide (PP 99.3 1E-08 2.2E-13 118.8 41.0 429 140-673 103-546 (697)
42 KOG0547 Translocase of outer m 99.3 6.2E-09 1.3E-13 106.8 33.9 224 391-652 340-568 (606)
43 PLN03218 maturation of RBCL 1; 99.3 7.8E-08 1.7E-12 113.6 46.1 426 140-661 353-795 (1060)
44 TIGR00540 hemY_coli hemY prote 99.3 4E-09 8.6E-14 113.9 32.9 287 140-536 100-399 (409)
45 KOG0547 Translocase of outer m 99.3 2.6E-09 5.7E-14 109.4 27.8 342 305-673 127-555 (606)
46 PRK14574 hmsH outer membrane p 99.3 2.8E-07 6.1E-12 106.1 47.8 438 140-655 50-518 (822)
47 PF05843 Suf: Suppressor of fo 99.3 8.6E-11 1.9E-15 119.5 15.2 145 160-374 3-151 (280)
48 PF05843 Suf: Suppressor of fo 99.3 1.4E-10 3.1E-15 117.9 16.2 111 412-551 3-115 (280)
49 PLN03077 Protein ECB2; Provisi 99.2 6.5E-08 1.4E-12 114.9 40.4 432 138-673 267-709 (857)
50 TIGR00540 hemY_coli hemY prote 99.2 6.2E-08 1.3E-12 104.7 34.8 258 308-650 133-399 (409)
51 PRK10747 putative protoheme IX 99.2 4.5E-08 9.7E-13 105.3 33.0 282 142-537 102-391 (398)
52 PLN03081 pentatricopeptide (PP 99.2 6.1E-08 1.3E-12 112.4 35.0 408 140-650 139-557 (697)
53 KOG0128 RNA-binding protein SA 99.2 1.8E-08 4E-13 109.6 27.4 262 391-675 204-517 (881)
54 KOG1173 Anaphase-promoting com 99.2 7.3E-08 1.6E-12 100.9 30.7 256 140-496 260-522 (611)
55 PRK14574 hmsH outer membrane p 99.1 1.9E-06 4.2E-11 99.3 43.7 394 152-655 28-484 (822)
56 PRK12370 invasion protein regu 99.1 7.2E-08 1.6E-12 108.2 29.0 227 390-651 274-503 (553)
57 KOG2076 RNA polymerase III tra 99.1 3.4E-07 7.4E-12 100.9 32.3 321 138-512 153-498 (895)
58 KOG1126 DNA-binding cell divis 99.1 6.9E-08 1.5E-12 103.2 25.8 274 174-538 336-622 (638)
59 PRK12370 invasion protein regu 99.1 1.4E-07 3E-12 105.9 30.1 189 307-537 275-471 (553)
60 KOG1155 Anaphase-promoting com 99.1 3.3E-06 7.1E-11 86.7 36.3 175 440-673 342-525 (559)
61 PLN03077 Protein ECB2; Provisi 99.0 8.3E-07 1.8E-11 105.5 37.4 407 138-649 302-719 (857)
62 KOG1155 Anaphase-promoting com 99.0 8.8E-06 1.9E-10 83.7 37.4 252 306-608 275-534 (559)
63 PRK11189 lipoprotein NlpI; Pro 99.0 1.2E-07 2.7E-12 97.5 23.9 167 308-509 113-283 (296)
64 KOG2076 RNA polymerase III tra 99.0 1.3E-06 2.8E-11 96.5 32.4 332 173-671 155-499 (895)
65 KOG1126 DNA-binding cell divis 99.0 2E-07 4.3E-12 99.7 25.0 261 302-616 362-626 (638)
66 TIGR02521 type_IV_pilW type IV 98.9 4.2E-07 9.1E-12 89.4 24.8 199 157-489 30-230 (234)
67 COG3063 PilF Tfp pilus assembl 98.9 9.3E-08 2E-12 89.7 17.8 175 441-671 48-223 (250)
68 TIGR02521 type_IV_pilW type IV 98.9 5.3E-07 1.2E-11 88.6 22.9 189 441-652 44-234 (234)
69 PRK10747 putative protoheme IX 98.9 6.6E-06 1.4E-10 88.5 32.8 285 306-651 97-391 (398)
70 KOG1173 Anaphase-promoting com 98.9 3.9E-06 8.4E-11 88.3 28.9 183 307-536 258-443 (611)
71 PF08424 NRDE-2: NRDE-2, neces 98.8 7.2E-08 1.6E-12 100.0 14.7 131 74-224 1-134 (321)
72 PRK11189 lipoprotein NlpI; Pro 98.8 3.7E-06 8E-11 86.6 25.1 234 391-666 40-282 (296)
73 KOG4162 Predicted calmodulin-b 98.7 0.00032 7E-09 76.8 40.2 98 139-237 304-404 (799)
74 KOG1156 N-terminal acetyltrans 98.7 0.00048 1E-08 74.1 38.7 367 173-651 23-435 (700)
75 KOG0624 dsRNA-activated protei 98.7 0.00016 3.4E-09 71.9 31.4 311 140-538 54-372 (504)
76 KOG1125 TPR repeat-containing 98.6 1.5E-06 3.2E-11 91.8 18.0 111 348-489 412-525 (579)
77 KOG1174 Anaphase-promoting com 98.5 6.2E-05 1.3E-09 76.5 25.6 295 144-508 218-516 (564)
78 COG2956 Predicted N-acetylgluc 98.5 0.0013 2.9E-08 65.1 35.2 227 345-652 122-353 (389)
79 PRK15179 Vi polysaccharide bio 98.5 1E-05 2.2E-10 91.7 22.7 144 352-537 74-218 (694)
80 PLN02789 farnesyltranstransfer 98.5 9.3E-05 2E-09 76.4 27.5 193 140-409 53-253 (320)
81 COG3063 PilF Tfp pilus assembl 98.5 2.7E-05 5.9E-10 73.5 20.1 182 298-512 40-222 (250)
82 KOG1174 Anaphase-promoting com 98.5 0.00044 9.4E-09 70.5 29.9 276 307-631 246-521 (564)
83 KOG4162 Predicted calmodulin-b 98.5 0.0019 4.1E-08 71.0 36.3 85 138-222 337-424 (799)
84 PRK15359 type III secretion sy 98.4 5.3E-06 1.1E-10 75.5 14.2 100 390-508 37-137 (144)
85 PRK10370 formate-dependent nit 98.4 7E-06 1.5E-10 78.9 15.6 98 139-236 54-154 (198)
86 KOG1156 N-terminal acetyltrans 98.4 0.0051 1.1E-07 66.5 39.0 96 140-236 57-153 (700)
87 KOG1125 TPR repeat-containing 98.4 1.7E-05 3.8E-10 83.9 19.0 211 297-536 289-527 (579)
88 PLN02789 farnesyltranstransfer 98.4 0.00025 5.4E-09 73.3 27.4 213 173-474 53-267 (320)
89 COG2956 Predicted N-acetylgluc 98.4 0.0027 5.9E-08 63.0 31.2 265 164-538 42-313 (389)
90 cd05804 StaR_like StaR_like; a 98.4 0.001 2.2E-08 70.5 31.5 155 308-494 58-217 (355)
91 PRK14720 transcript cleavage f 98.3 0.00016 3.5E-09 82.9 26.0 270 323-667 27-303 (906)
92 KOG2003 TPR repeat-containing 98.3 0.00044 9.6E-09 70.9 25.7 201 390-628 503-707 (840)
93 PRK15359 type III secretion sy 98.3 1.3E-05 2.9E-10 72.8 13.5 89 144-236 13-102 (144)
94 PF08424 NRDE-2: NRDE-2, neces 98.3 2.9E-05 6.2E-10 80.7 17.5 177 398-610 6-183 (321)
95 PRK10370 formate-dependent nit 98.3 1.8E-05 4E-10 76.0 14.1 121 346-495 55-176 (198)
96 KOG3060 Uncharacterized conser 98.2 0.00039 8.5E-09 66.6 21.8 156 345-539 67-223 (289)
97 TIGR03302 OM_YfiO outer membra 98.2 0.0001 2.2E-09 73.2 19.3 182 305-495 45-235 (235)
98 TIGR02552 LcrH_SycD type III s 98.2 3.2E-05 7E-10 69.4 14.0 91 145-236 4-95 (135)
99 PF08311 Mad3_BUB1_I: Mad3/BUB 98.2 1.9E-05 4.2E-10 69.5 11.8 111 75-219 2-126 (126)
100 KOG1129 TPR repeat-containing 98.2 0.00014 3.1E-09 71.8 18.6 224 170-497 235-463 (478)
101 PF12569 NARP1: NMDA receptor- 98.2 0.0038 8.2E-08 68.6 31.5 143 459-652 189-336 (517)
102 TIGR02552 LcrH_SycD type III s 98.2 6.4E-05 1.4E-09 67.5 14.8 118 352-501 5-123 (135)
103 KOG1840 Kinesin light chain [C 98.2 0.00042 9E-09 75.2 23.1 232 344-609 213-478 (508)
104 KOG1129 TPR repeat-containing 98.2 6.9E-05 1.5E-09 73.9 15.2 221 390-653 236-461 (478)
105 TIGR03302 OM_YfiO outer membra 98.1 0.00026 5.6E-09 70.3 19.8 170 140-362 49-235 (235)
106 KOG2003 TPR repeat-containing 98.1 0.001 2.2E-08 68.4 23.6 165 308-511 539-708 (840)
107 cd05804 StaR_like StaR_like; a 98.1 0.0034 7.4E-08 66.5 29.6 293 309-651 22-337 (355)
108 KOG1127 TPR repeat-containing 98.1 0.0041 8.9E-08 70.1 29.9 148 308-489 507-657 (1238)
109 KOG3060 Uncharacterized conser 98.1 0.0012 2.6E-08 63.3 22.5 123 308-461 101-224 (289)
110 KOG0624 dsRNA-activated protei 98.1 0.0076 1.6E-07 60.3 28.5 306 302-654 47-374 (504)
111 KOG1840 Kinesin light chain [C 98.1 0.001 2.3E-08 72.2 23.8 234 168-489 209-477 (508)
112 PRK15179 Vi polysaccharide bio 98.0 0.0003 6.6E-09 79.9 19.2 139 324-496 83-222 (694)
113 KOG0548 Molecular co-chaperone 98.0 0.039 8.5E-07 58.7 35.4 368 139-540 17-459 (539)
114 PF14559 TPR_19: Tetratricopep 97.9 4.2E-05 9.2E-10 59.5 7.6 64 441-505 4-67 (68)
115 COG5191 Uncharacterized conser 97.9 1.8E-05 3.9E-10 77.3 5.7 82 582-668 108-189 (435)
116 PF02184 HAT: HAT (Half-A-TPR) 97.9 1.9E-05 4.1E-10 49.7 3.7 31 636-667 2-32 (32)
117 KOG1127 TPR repeat-containing 97.8 0.016 3.4E-07 65.6 27.5 62 174-236 475-536 (1238)
118 PLN03088 SGT1, suppressor of 97.8 0.00038 8.3E-09 73.5 13.7 95 140-235 18-113 (356)
119 PRK14720 transcript cleavage f 97.7 0.0076 1.7E-07 69.6 24.0 67 323-406 112-178 (906)
120 PF12569 NARP1: NMDA receptor- 97.7 0.038 8.3E-07 60.8 28.4 71 441-512 207-277 (517)
121 KOG0550 Molecular chaperone (D 97.7 0.0039 8.4E-08 63.9 18.8 160 345-536 184-350 (486)
122 PF14559 TPR_19: Tetratricopep 97.7 0.00019 4.1E-09 55.7 7.2 61 173-234 7-67 (68)
123 COG4783 Putative Zn-dependent 97.7 0.0019 4E-08 67.8 16.4 103 138-241 320-423 (484)
124 PLN03088 SGT1, suppressor of 97.6 0.00068 1.5E-08 71.6 12.9 97 441-548 15-111 (356)
125 smart00386 HAT HAT (Half-A-TPR 97.6 0.0001 2.2E-09 47.9 4.2 32 636-667 2-33 (33)
126 PF13432 TPR_16: Tetratricopep 97.5 0.00023 5E-09 54.7 6.3 56 441-497 10-65 (65)
127 PF13414 TPR_11: TPR repeat; P 97.5 0.00041 9E-09 54.0 7.8 66 157-223 2-69 (69)
128 PF13432 TPR_16: Tetratricopep 97.5 0.0003 6.5E-09 54.1 6.7 61 165-226 4-65 (65)
129 cd00189 TPR Tetratricopeptide 97.5 0.0021 4.5E-08 52.2 11.8 87 390-495 13-100 (100)
130 PRK15363 pathogenicity island 97.5 0.0012 2.5E-08 59.7 10.3 86 139-225 50-136 (157)
131 COG4783 Putative Zn-dependent 97.4 0.0034 7.3E-08 65.9 15.0 120 361-512 303-423 (484)
132 smart00777 Mad3_BUB1_I Mad3/BU 97.4 0.0014 3E-08 57.0 10.3 109 76-218 3-125 (125)
133 PF09976 TPR_21: Tetratricopep 97.4 0.0053 1.2E-07 55.8 14.8 117 345-489 26-145 (145)
134 smart00386 HAT HAT (Half-A-TPR 97.4 0.00028 6E-09 45.7 4.5 32 206-237 1-32 (33)
135 PF13428 TPR_14: Tetratricopep 97.4 0.00035 7.7E-09 49.0 5.3 43 191-234 1-43 (44)
136 COG4235 Cytochrome c biogenesi 97.4 0.0037 8.1E-08 62.0 14.0 129 347-505 139-268 (287)
137 PF02184 HAT: HAT (Half-A-TPR) 97.4 0.00029 6.4E-09 44.4 3.8 30 207-237 2-31 (32)
138 cd00189 TPR Tetratricopeptide 97.4 0.0014 2.9E-08 53.4 9.3 84 140-224 16-100 (100)
139 KOG0553 TPR repeat-containing 97.3 0.0021 4.5E-08 63.5 11.4 94 138-232 95-189 (304)
140 KOG0548 Molecular co-chaperone 97.3 0.31 6.8E-06 52.1 28.8 315 305-655 14-460 (539)
141 PF13428 TPR_14: Tetratricopep 97.3 0.00037 8.1E-09 48.8 4.5 43 462-505 1-43 (44)
142 KOG1128 Uncharacterized conser 97.3 0.0035 7.6E-08 68.6 13.3 56 442-507 412-467 (777)
143 PRK11906 transcriptional regul 97.3 0.054 1.2E-06 57.4 21.4 136 390-547 271-415 (458)
144 PF13371 TPR_9: Tetratricopept 97.3 0.0012 2.7E-08 51.9 7.4 56 173-229 11-66 (73)
145 KOG0553 TPR repeat-containing 97.2 0.0023 4.9E-08 63.2 10.3 90 441-541 94-183 (304)
146 COG5010 TadD Flp pilus assembl 97.2 0.05 1.1E-06 52.9 19.1 160 143-374 52-212 (257)
147 KOG1128 Uncharacterized conser 97.2 0.024 5.1E-07 62.4 18.0 113 346-489 501-614 (777)
148 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0061 1.3E-07 64.4 13.3 102 390-512 182-283 (395)
149 COG3071 HemY Uncharacterized e 97.1 0.41 8.9E-06 49.4 29.7 130 362-536 261-390 (400)
150 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0067 1.5E-07 52.5 11.6 90 390-498 15-111 (119)
151 PF13414 TPR_11: TPR repeat; P 97.1 0.0028 6.2E-08 49.2 8.2 68 461-538 2-69 (69)
152 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0078 1.7E-07 63.6 13.8 109 344-486 183-292 (395)
153 PRK15363 pathogenicity island 97.1 0.0044 9.5E-08 56.0 10.0 86 441-537 48-133 (157)
154 PF13371 TPR_9: Tetratricopept 97.1 0.0023 4.9E-08 50.4 7.1 62 441-503 8-69 (73)
155 COG5010 TadD Flp pilus assembl 97.1 0.11 2.4E-06 50.5 19.8 52 459-511 97-148 (257)
156 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.011 2.4E-07 51.1 11.5 87 140-227 18-111 (119)
157 PF12895 Apc3: Anaphase-promot 97.0 0.0029 6.2E-08 51.5 7.1 81 441-533 2-84 (84)
158 PRK10153 DNA-binding transcrip 96.8 0.077 1.7E-06 58.7 19.1 153 355-541 328-487 (517)
159 COG4235 Cytochrome c biogenesi 96.8 0.05 1.1E-06 54.2 15.7 94 309-415 172-265 (287)
160 CHL00033 ycf3 photosystem I as 96.8 0.044 9.4E-07 51.1 14.7 88 149-237 24-117 (168)
161 PF12895 Apc3: Anaphase-promot 96.5 0.01 2.2E-07 48.2 7.4 80 390-488 2-84 (84)
162 PF09976 TPR_21: Tetratricopep 96.4 0.096 2.1E-06 47.5 13.7 118 391-534 25-145 (145)
163 PF08311 Mad3_BUB1_I: Mad3/BUB 96.4 0.086 1.9E-06 46.4 12.6 115 524-648 2-126 (126)
164 PRK10803 tol-pal system protei 96.3 0.046 1E-06 54.9 11.9 86 140-226 159-251 (263)
165 PRK10803 tol-pal system protei 96.3 0.13 2.8E-06 51.6 14.9 77 157-234 141-222 (263)
166 KOG2053 Mitochondrial inherita 96.3 2.8 6.1E-05 47.9 26.1 225 391-663 23-265 (932)
167 PRK10153 DNA-binding transcrip 96.3 0.25 5.3E-06 54.8 18.3 152 321-497 331-487 (517)
168 KOG3785 Uncharacterized conser 96.3 1.6 3.5E-05 44.4 28.2 167 156-372 57-227 (557)
169 PRK02603 photosystem I assembl 96.1 0.075 1.6E-06 49.8 11.9 86 364-477 35-121 (172)
170 PF13431 TPR_17: Tetratricopep 96.1 0.0076 1.6E-07 39.4 3.4 32 451-482 2-33 (34)
171 KOG0550 Molecular chaperone (D 96.0 0.35 7.5E-06 50.1 16.2 167 464-653 171-353 (486)
172 PF12688 TPR_5: Tetratrico pep 96.0 0.1 2.2E-06 45.4 11.0 83 441-534 14-102 (120)
173 CHL00033 ycf3 photosystem I as 95.9 0.13 2.9E-06 47.8 12.5 100 364-495 35-152 (168)
174 PF13525 YfiO: Outer membrane 95.8 0.83 1.8E-05 44.0 17.7 129 345-497 20-175 (203)
175 PF04733 Coatomer_E: Coatomer 95.8 0.43 9.4E-06 48.7 16.2 104 390-512 144-250 (290)
176 KOG2376 Signal recognition par 95.7 4.3 9.2E-05 44.3 24.8 50 442-495 93-142 (652)
177 KOG0543 FKBP-type peptidyl-pro 95.5 0.31 6.8E-06 50.5 13.7 124 390-538 221-357 (397)
178 PRK02603 photosystem I assembl 95.5 0.14 3E-06 48.0 10.6 70 441-511 48-120 (172)
179 COG3071 HemY Uncharacterized e 95.3 4.2 9.1E-05 42.3 27.8 116 345-490 99-215 (400)
180 COG4785 NlpI Lipoprotein NlpI, 95.3 1.7 3.7E-05 41.3 16.7 47 365-424 238-284 (297)
181 PF13431 TPR_17: Tetratricopep 95.3 0.028 6E-07 36.8 3.7 32 180-212 2-33 (34)
182 PF13525 YfiO: Outer membrane 95.2 3.1 6.6E-05 40.1 20.7 58 169-227 16-77 (203)
183 PRK10866 outer membrane biogen 95.1 3.2 7E-05 41.2 19.7 153 442-618 46-212 (243)
184 PRK11906 transcriptional regul 95.1 1.8 3.9E-05 46.2 18.3 128 346-495 274-404 (458)
185 PF14938 SNAP: Soluble NSF att 94.9 1.7 3.7E-05 44.3 17.4 61 586-652 160-227 (282)
186 COG1729 Uncharacterized protei 94.8 0.49 1.1E-05 46.7 12.5 56 442-498 192-250 (262)
187 PF12688 TPR_5: Tetratrico pep 94.7 0.64 1.4E-05 40.4 11.5 85 390-489 14-102 (120)
188 KOG3785 Uncharacterized conser 94.6 3.5 7.6E-05 42.1 17.8 79 391-489 36-118 (557)
189 PF07719 TPR_2: Tetratricopept 94.6 0.1 2.2E-06 33.7 5.0 34 191-225 1-34 (34)
190 PRK10866 outer membrane biogen 94.4 5.8 0.00013 39.4 23.8 47 442-488 189-238 (243)
191 PRK15331 chaperone protein Sic 94.0 0.34 7.4E-06 44.2 8.7 84 140-225 53-137 (165)
192 PF13512 TPR_18: Tetratricopep 94.0 0.45 9.8E-06 42.4 9.2 87 390-497 23-133 (142)
193 PF04733 Coatomer_E: Coatomer 93.9 0.93 2E-05 46.3 12.9 166 462-654 102-269 (290)
194 KOG2053 Mitochondrial inherita 93.9 15 0.00033 42.2 27.2 162 308-496 92-259 (932)
195 KOG0543 FKBP-type peptidyl-pro 93.8 1.3 2.8E-05 46.1 13.4 99 140-239 224-338 (397)
196 COG4700 Uncharacterized protei 93.6 6.2 0.00014 36.7 16.8 131 463-613 90-229 (251)
197 PF13512 TPR_18: Tetratricopep 93.6 1.5 3.2E-05 39.2 11.6 62 173-237 26-92 (142)
198 PLN03098 LPA1 LOW PSII ACCUMUL 93.5 0.36 7.9E-06 51.2 9.1 52 440-492 87-141 (453)
199 PRK15331 chaperone protein Sic 93.5 0.95 2.1E-05 41.4 10.6 85 441-536 50-134 (165)
200 PLN03098 LPA1 LOW PSII ACCUMUL 93.5 0.33 7.2E-06 51.5 8.7 69 153-222 70-142 (453)
201 KOG3617 WD40 and TPR repeat-co 93.3 12 0.00026 42.6 20.2 125 442-607 814-938 (1416)
202 PF06552 TOM20_plant: Plant sp 93.0 2.3 4.9E-05 39.4 12.2 30 208-237 51-80 (186)
203 PF06552 TOM20_plant: Plant sp 93.0 1.2 2.5E-05 41.3 10.3 96 139-235 6-122 (186)
204 PF07719 TPR_2: Tetratricopept 92.9 0.2 4.4E-06 32.2 4.1 34 462-496 1-34 (34)
205 PF14938 SNAP: Soluble NSF att 91.6 7.9 0.00017 39.4 16.0 157 307-495 49-228 (282)
206 KOG4234 TPR repeat-containing 91.5 1.6 3.5E-05 40.9 9.4 88 441-539 108-200 (271)
207 COG4105 ComL DNA uptake lipopr 91.4 15 0.00034 36.1 19.9 183 300-502 41-241 (254)
208 smart00777 Mad3_BUB1_I Mad3/BU 91.4 4.1 8.8E-05 35.6 11.4 113 525-646 3-124 (125)
209 KOG3824 Huntingtin interacting 90.9 0.48 1E-05 47.1 5.8 63 441-504 129-191 (472)
210 COG1729 Uncharacterized protei 90.9 1.7 3.7E-05 43.0 9.6 96 297-410 145-248 (262)
211 COG4105 ComL DNA uptake lipopr 90.6 19 0.0004 35.6 21.3 184 441-652 47-234 (254)
212 COG4700 Uncharacterized protei 90.4 15 0.00033 34.2 17.3 127 345-504 104-238 (251)
213 PRK04841 transcriptional regul 90.3 49 0.0011 39.9 29.7 300 307-653 423-763 (903)
214 PF13424 TPR_12: Tetratricopep 89.9 0.65 1.4E-05 36.7 5.0 67 459-536 2-75 (78)
215 PF00515 TPR_1: Tetratricopept 89.6 1 2.2E-05 28.9 4.9 33 191-224 1-33 (34)
216 KOG3617 WD40 and TPR repeat-co 89.6 45 0.00097 38.3 28.1 85 362-489 910-994 (1416)
217 PF13174 TPR_6: Tetratricopept 89.2 0.54 1.2E-05 29.8 3.3 32 464-496 2-33 (33)
218 PF03704 BTAD: Bacterial trans 89.0 2.3 5.1E-05 38.2 8.6 57 162-219 66-123 (146)
219 PF00515 TPR_1: Tetratricopept 88.4 0.98 2.1E-05 29.0 4.2 34 462-496 1-34 (34)
220 KOG4234 TPR repeat-containing 88.3 7.5 0.00016 36.6 11.0 91 390-496 108-201 (271)
221 PF10300 DUF3808: Protein of u 87.5 6.8 0.00015 43.1 12.4 118 345-488 248-373 (468)
222 KOG3081 Vesicle coat complex C 87.5 32 0.0007 34.1 15.6 69 443-512 188-256 (299)
223 PF13181 TPR_8: Tetratricopept 87.0 1.3 2.9E-05 28.3 4.1 32 192-224 2-33 (34)
224 PF03704 BTAD: Bacterial trans 86.8 6.3 0.00014 35.4 10.0 61 464-535 64-124 (146)
225 KOG3824 Huntingtin interacting 85.2 1.6 3.4E-05 43.6 5.2 60 173-233 132-191 (472)
226 COG4785 NlpI Lipoprotein NlpI, 84.0 42 0.00091 32.3 16.3 195 442-667 79-282 (297)
227 PF13181 TPR_8: Tetratricopept 82.3 2.1 4.5E-05 27.3 3.5 32 463-495 2-33 (34)
228 PF13424 TPR_12: Tetratricopep 82.3 1.9 4E-05 34.0 3.8 49 441-489 18-73 (78)
229 KOG4642 Chaperone-dependent E3 82.0 9.1 0.0002 37.1 8.7 92 142-234 28-125 (284)
230 PF02259 FAT: FAT domain; Int 80.3 78 0.0017 32.9 19.1 125 541-668 144-305 (352)
231 PF13281 DUF4071: Domain of un 80.3 84 0.0018 33.2 20.1 172 442-615 155-339 (374)
232 PF13174 TPR_6: Tetratricopept 79.6 3.3 7.2E-05 26.0 3.7 22 204-225 12-33 (33)
233 KOG4555 TPR repeat-containing 77.5 22 0.00049 31.2 8.8 86 441-536 56-144 (175)
234 smart00028 TPR Tetratricopepti 76.9 4.2 9.1E-05 24.4 3.6 32 463-495 2-33 (34)
235 PF13176 TPR_7: Tetratricopept 75.3 5.4 0.00012 26.1 3.8 25 465-489 2-26 (36)
236 KOG2376 Signal recognition par 74.8 1.5E+02 0.0031 33.1 41.1 79 580-664 416-505 (652)
237 PF04184 ST7: ST7 protein; In 74.6 94 0.002 33.8 14.4 158 352-539 190-378 (539)
238 PF10300 DUF3808: Protein of u 74.3 1.4E+02 0.0031 32.8 18.5 161 311-499 175-341 (468)
239 KOG4642 Chaperone-dependent E3 73.3 25 0.00055 34.2 9.0 83 442-535 24-106 (284)
240 KOG0545 Aryl-hydrocarbon recep 73.2 38 0.00082 33.2 10.1 87 441-538 191-295 (329)
241 KOG0890 Protein kinase of the 73.1 3E+02 0.0066 36.1 22.1 64 156-222 1668-1732(2382)
242 PF02259 FAT: FAT domain; Int 73.0 1.2E+02 0.0027 31.4 17.8 67 154-221 142-213 (352)
243 smart00028 TPR Tetratricopepti 72.9 6 0.00013 23.7 3.6 32 192-224 2-33 (34)
244 TIGR02996 rpt_mate_G_obs repea 72.9 9 0.00019 26.1 4.2 33 450-482 4-36 (42)
245 PRK04841 transcriptional regul 69.2 2.6E+02 0.0056 33.6 29.9 157 345-539 588-763 (903)
246 COG3898 Uncharacterized membra 68.9 1.6E+02 0.0035 31.1 27.7 303 307-669 98-426 (531)
247 PF14561 TPR_20: Tetratricopep 67.4 68 0.0015 26.2 9.9 47 449-496 9-55 (90)
248 PF14853 Fis1_TPR_C: Fis1 C-te 67.0 16 0.00034 26.6 4.8 24 204-227 13-36 (53)
249 PF15297 CKAP2_C: Cytoskeleton 65.5 16 0.00035 37.6 6.3 53 343-408 116-171 (353)
250 PF04184 ST7: ST7 protein; In 64.6 96 0.0021 33.8 12.0 50 474-536 180-229 (539)
251 KOG3081 Vesicle coat complex C 62.8 1.7E+02 0.0037 29.2 16.4 42 588-629 214-255 (299)
252 KOG4648 Uncharacterized conser 62.7 31 0.00067 35.4 7.5 95 139-236 112-209 (536)
253 PRK10941 hypothetical protein; 62.4 44 0.00094 33.7 8.8 69 158-227 177-250 (269)
254 COG0457 NrfG FOG: TPR repeat [ 62.2 1.3E+02 0.0028 27.7 21.6 189 308-538 74-267 (291)
255 PRK10941 hypothetical protein; 61.0 71 0.0015 32.2 10.0 64 441-505 194-257 (269)
256 PF13041 PPR_2: PPR repeat fam 59.1 47 0.001 23.3 6.3 44 462-505 3-46 (50)
257 KOG4648 Uncharacterized conser 56.9 35 0.00075 35.0 6.8 89 440-539 109-197 (536)
258 KOG4555 TPR repeat-containing 56.8 76 0.0017 28.0 7.9 59 586-650 82-144 (175)
259 PF08631 SPO22: Meiosis protei 56.3 2.3E+02 0.0049 28.6 19.5 62 442-504 101-162 (278)
260 PF14561 TPR_20: Tetratricopep 55.5 1.1E+02 0.0025 24.9 9.5 48 177-225 8-55 (90)
261 TIGR02996 rpt_mate_G_obs repea 54.3 34 0.00074 23.4 4.3 29 179-208 4-32 (42)
262 COG4976 Predicted methyltransf 54.2 24 0.00053 34.1 5.0 55 441-496 8-62 (287)
263 PRK13184 pknD serine/threonine 54.1 61 0.0013 38.7 9.4 93 391-497 489-586 (932)
264 KOG2610 Uncharacterized conser 53.0 2.8E+02 0.0061 28.7 15.4 95 390-504 116-214 (491)
265 COG4976 Predicted methyltransf 51.8 18 0.00039 35.0 3.7 52 173-225 11-62 (287)
266 PF13176 TPR_7: Tetratricopept 51.6 35 0.00076 22.1 4.2 28 194-222 2-29 (36)
267 KOG1586 Protein required for f 48.2 2.8E+02 0.0061 27.3 15.7 47 443-489 29-81 (288)
268 PF11846 DUF3366: Domain of un 47.9 1.2E+02 0.0026 28.6 9.0 52 442-495 125-176 (193)
269 COG2976 Uncharacterized protei 47.7 2.6E+02 0.0055 26.7 10.5 85 441-538 102-190 (207)
270 KOG0890 Protein kinase of the 47.1 8.3E+02 0.018 32.4 23.5 83 443-536 1871-1957(2382)
271 PF15297 CKAP2_C: Cytoskeleton 47.1 47 0.001 34.4 6.1 61 174-235 120-184 (353)
272 KOG1585 Protein required for f 45.5 3.2E+02 0.0069 27.1 18.1 88 391-489 45-137 (308)
273 KOG0376 Serine-threonine phosp 44.4 27 0.00058 37.5 4.1 94 139-233 19-113 (476)
274 PF12854 PPR_1: PPR repeat 42.9 61 0.0013 20.8 4.2 28 460-487 5-32 (34)
275 COG3629 DnrI DNA-binding trans 41.7 1E+02 0.0022 31.1 7.6 46 174-220 170-215 (280)
276 KOG1166 Mitotic checkpoint ser 41.6 2.1E+02 0.0046 34.4 11.1 135 77-239 19-162 (974)
277 PF09986 DUF2225: Uncharacteri 40.6 2.3E+02 0.005 27.4 9.7 49 441-489 138-192 (214)
278 KOG0545 Aryl-hydrocarbon recep 40.1 1.2E+02 0.0026 29.9 7.2 52 173-225 246-297 (329)
279 KOG0551 Hsp90 co-chaperone CNS 39.8 1.9E+02 0.0042 29.8 9.0 85 390-489 94-180 (390)
280 KOG0376 Serine-threonine phosp 37.7 43 0.00093 36.0 4.3 87 442-539 18-104 (476)
281 PF09613 HrpB1_HrpK: Bacterial 37.2 3.3E+02 0.0072 25.0 12.4 52 345-409 25-76 (160)
282 KOG2796 Uncharacterized conser 37.0 4.5E+02 0.0097 26.4 13.9 122 347-495 194-318 (366)
283 TIGR03504 FimV_Cterm FimV C-te 36.8 58 0.0013 22.6 3.5 24 466-489 3-26 (44)
284 PF13374 TPR_10: Tetratricopep 36.8 77 0.0017 20.6 4.3 26 464-489 4-29 (42)
285 PF07721 TPR_4: Tetratricopept 35.6 51 0.0011 19.6 2.8 23 464-486 3-25 (26)
286 PF04781 DUF627: Protein of un 35.6 2.8E+02 0.0061 23.7 8.6 97 390-494 9-110 (111)
287 cd02684 MIT_2 MIT: domain cont 34.5 1.7E+02 0.0036 23.0 6.2 40 444-506 3-42 (75)
288 COG3629 DnrI DNA-binding trans 34.4 1E+02 0.0022 31.1 6.3 48 442-489 167-214 (280)
289 KOG1308 Hsp70-interacting prot 34.1 17 0.00037 37.2 0.7 81 442-535 128-210 (377)
290 COG4840 Uncharacterized protei 33.9 42 0.00091 25.3 2.5 31 42-72 1-34 (71)
291 PF13041 PPR_2: PPR repeat fam 33.2 1.7E+02 0.0036 20.4 5.7 38 585-622 7-45 (50)
292 PF13281 DUF4071: Domain of un 33.1 6.2E+02 0.013 26.9 17.8 137 343-495 195-337 (374)
293 KOG1308 Hsp70-interacting prot 31.9 20 0.00043 36.8 0.8 90 139-231 129-222 (377)
294 KOG0529 Protein geranylgeranyl 31.7 2.8E+02 0.006 29.6 8.9 93 142-235 93-192 (421)
295 cd02680 MIT_calpain7_2 MIT: do 30.9 58 0.0013 25.6 3.0 31 444-489 3-33 (75)
296 PF11207 DUF2989: Protein of u 30.1 3.5E+02 0.0075 25.9 8.6 69 394-481 123-197 (203)
297 PF07720 TPR_3: Tetratricopept 29.0 1.7E+02 0.0037 19.2 4.9 31 192-223 2-34 (36)
298 KOG1464 COP9 signalosome, subu 28.9 6.1E+02 0.013 25.5 14.5 49 441-489 40-92 (440)
299 KOG0551 Hsp90 co-chaperone CNS 27.1 3.4E+02 0.0074 28.1 8.4 88 306-407 94-183 (390)
300 PF09205 DUF1955: Domain of un 26.5 3.6E+02 0.0079 24.0 7.3 50 441-490 99-148 (161)
301 KOG1972 Uncharacterized conser 26.4 4E+02 0.0086 31.0 9.5 90 17-112 692-783 (913)
302 PF10602 RPN7: 26S proteasome 26.4 5.3E+02 0.011 24.0 9.3 59 586-650 41-102 (177)
303 PF09851 SHOCT: Short C-termin 26.0 1.4E+02 0.0031 18.8 3.7 25 52-76 3-27 (31)
304 COG3947 Response regulator con 25.3 1.7E+02 0.0036 29.7 5.7 46 195-241 283-328 (361)
305 COG2976 Uncharacterized protei 25.1 6.1E+02 0.013 24.2 12.1 89 390-495 102-191 (207)
306 PF11846 DUF3366: Domain of un 24.8 2.2E+02 0.0047 26.8 6.6 46 176-223 130-175 (193)
307 KOG1166 Mitotic checkpoint ser 24.3 1.3E+03 0.028 28.1 13.7 68 443-510 93-162 (974)
308 KOG1464 COP9 signalosome, subu 24.2 7.4E+02 0.016 24.9 16.0 88 559-652 163-262 (440)
309 cd02678 MIT_VPS4 MIT: domain c 24.0 2.2E+02 0.0049 22.1 5.4 31 444-489 3-33 (75)
310 TIGR00756 PPR pentatricopeptid 24.0 1.8E+02 0.0039 17.7 4.3 26 465-490 3-28 (35)
311 PF04910 Tcf25: Transcriptiona 23.9 8.7E+02 0.019 25.6 16.8 34 456-489 34-67 (360)
312 KOG0985 Vesicle coat protein c 23.6 1.4E+03 0.03 27.9 17.9 42 443-489 1090-1131(1666)
313 PF10602 RPN7: 26S proteasome 23.4 6E+02 0.013 23.6 10.4 48 463-511 37-87 (177)
314 KOG1333 Uncharacterized conser 23.4 4.8E+02 0.01 24.8 7.9 75 522-608 41-116 (241)
315 KOG1585 Protein required for f 22.2 7.9E+02 0.017 24.5 14.4 21 492-512 86-106 (308)
316 cd02683 MIT_1 MIT: domain cont 22.1 2.4E+02 0.0052 22.2 5.2 40 445-507 4-43 (77)
317 KOG4507 Uncharacterized conser 22.0 4.4E+02 0.0096 29.5 8.5 93 139-232 622-716 (886)
318 KOG1310 WD40 repeat protein [G 21.8 2.7E+02 0.0058 30.7 6.8 85 139-224 389-477 (758)
319 KOG3364 Membrane protein invol 21.7 2.1E+02 0.0045 25.5 5.0 53 175-227 53-106 (149)
320 PF01535 PPR: PPR repeat; Int 21.7 1.4E+02 0.0029 17.8 3.1 25 465-489 3-27 (31)
321 PF13624 SurA_N_3: SurA N-term 21.5 1.9E+02 0.004 26.0 5.2 36 46-81 76-115 (154)
322 smart00299 CLH Clathrin heavy 21.3 5.5E+02 0.012 22.3 9.0 14 224-237 123-136 (140)
323 cd08329 CARD_BIRC2_BIRC3 Caspa 21.3 3.2E+02 0.0069 22.5 5.9 45 56-100 28-79 (94)
324 COG3947 Response regulator con 20.9 3E+02 0.0065 28.0 6.5 48 168-216 289-337 (361)
325 PF06569 DUF1128: Protein of u 20.3 82 0.0018 24.4 2.0 53 42-94 1-58 (71)
326 COG0457 NrfG FOG: TPR repeat [ 20.1 6.5E+02 0.014 22.7 26.1 188 442-653 73-268 (291)
No 1
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-70 Score=550.55 Aligned_cols=541 Identities=35% Similarity=0.595 Sum_probs=431.3
Q ss_pred hHHHHHHHHHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 005817 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG 121 (676)
Q Consensus 42 ma~~v~~~~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~ 121 (676)
|||+||.++|+||||++||+++||||++||+.|+++|+.||++|+|+...+.||++||+||.++++||.+|+|.
T Consensus 1 Mae~iqy~~Er~lpElEdl~~~giFt~dEi~~Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk------ 74 (568)
T KOG2396|consen 1 MAEKIQYRMERMLPELEDLKRKGIFTRDEIREIVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKK------ 74 (568)
T ss_pred CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred hhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW 200 (676)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~ 200 (676)
++.+.+.+|.++++||..+|++|+.+|++|+++|..|+.||++.+ +.++.++|..+|+.||++|++|+.+|.|
T Consensus 75 ------~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w 148 (568)
T KOG2396|consen 75 ------KRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW 148 (568)
T ss_pred ------hhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh
Confidence 234778899999999999999999999999999999999999988 6899999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCC
Q 005817 201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280 (676)
Q Consensus 201 e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (676)
+++.+.|++.||.+|.||||+||+++.||.+|++||+.+++++.+|+.++|.+.... ++.
T Consensus 149 efe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~-------~~e------------- 208 (568)
T KOG2396|consen 149 EFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK-------DEE------------- 208 (568)
T ss_pred HHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHH-------------
Confidence 999998999999999999999999999999999999999999999999888643210 000
Q ss_pred CCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC
Q 005817 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF 360 (676)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~ 360 (676)
+ ...+.+-.++...+..+.... .-.. .+....++. ..+..+.+++.+...+
T Consensus 209 ----------------i---------e~ge~~~~~~~~s~~~~~~~~-k~~e-~~~~~~~d~--~kel~k~i~d~~~~~~ 259 (568)
T KOG2396|consen 209 ----------------I---------ERGELAWINYANSVDIIKGAV-KSVE-LSVAEKFDF--LKELQKNIIDDLQSKA 259 (568)
T ss_pred ----------------H---------HHHHHHHHhhccchhhhhcch-hhcc-hHHHHHHHH--HHHHHHHHHHHHhccC
Confidence 0 011222222222222111000 0000 011112221 3467888999999999
Q ss_pred CCChhhHHHHHHHhccccCCC------CCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCC
Q 005817 361 LVDPKYWDWLARLKMTDSVSK------DGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDS 434 (676)
Q Consensus 361 p~~~~~w~~la~~~~~~~~~~------~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~ 434 (676)
|++|.+|..+|+.++..-..+ ...+....-..-+.+.++|+++++.+++..||..|++++.+.+...
T Consensus 260 ~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~------- 332 (568)
T KOG2396|consen 260 PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFL------- 332 (568)
T ss_pred CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh-------
Confidence 999999999999987532111 1111122223456789999999999999999999999999865310
Q ss_pred CCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcccc
Q 005817 435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN 514 (676)
Q Consensus 435 ~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~ 514 (676)
....+.....+++.+.......+...-.|+.+.+......+|+.+..+++...+.++..+|..+++...+...
T Consensus 333 -----r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s-- 405 (568)
T KOG2396|consen 333 -----RGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS-- 405 (568)
T ss_pred -----hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--
Confidence 1135788899999999998888888888988888777778888888888867888999999999998875432
Q ss_pred CCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHH--HHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH
Q 005817 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMAL--KFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI 592 (676)
Q Consensus 515 ~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~ 592 (676)
|.+-..+.....++..+.......|.+.. +.+.. .....++..+.....++ ...+...|++|.+
T Consensus 406 -------D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~--~~~~~Ii~a~~s~~~~~-----~~tl~s~~l~~~~ 471 (568)
T KOG2396|consen 406 -------DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQE--DTLDLIISALLSVIGAD-----SVTLKSKYLDWAY 471 (568)
T ss_pred -------hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhH--HHHHHHHHHHHHhcCCc-----eeehhHHHHHHHH
Confidence 34544444445566666666777888765 11111 12222333333223333 3577888999999
Q ss_pred HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 593 ~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (676)
+.|+..+||++|.+...+||.+..++.++|++|..+.++ ++..+|.+|++|+..||+++++|.+|..||..+|.++
T Consensus 472 e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc----~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~e 547 (568)
T KOG2396|consen 472 ESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESC----NLANIREYYDRALREFGADSDLWMDYMKEELPLGRPE 547 (568)
T ss_pred HhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhc----CchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcc
Confidence 999999999999999999999999999999999998877 7999999999999999999999999999999999999
Q ss_pred cCC
Q 005817 673 LCF 675 (676)
Q Consensus 673 ~~~ 675 (676)
.|.
T Consensus 548 n~~ 550 (568)
T KOG2396|consen 548 NCG 550 (568)
T ss_pred ccc
Confidence 984
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.5e-57 Score=447.77 Aligned_cols=490 Identities=19% Similarity=0.300 Sum_probs=402.7
Q ss_pred chHHHHHHHHHhhhHhHHHHH-------HcCCCCHHHHHHH-HHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH
Q 005817 41 AMADVVQYRLERMVDELDDLE-------RRGLFTRHEISEI-VKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLR 112 (676)
Q Consensus 41 ~ma~~v~~~~e~~~~e~~~~~-------~~~~~~~~ei~~i-~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R 112 (676)
+-+..||++.||+|+|..+-+ ..+|.+.+|+++. .++|+.||..|.++..+...|++|++||.++..
T Consensus 14 ktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e----- 88 (677)
T KOG1915|consen 14 KTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKE----- 88 (677)
T ss_pred CCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Confidence 567789999999999998765 3456678999998 999999999999999999999999999988642
Q ss_pred HhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chHHHHHHHHHHhCCCCH
Q 005817 113 KKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVP 191 (676)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~P~~~ 191 (676)
..||++||+|||.....++.||++|++++++.+. .+|+++++||+...|+..
T Consensus 89 ---------------------------~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 89 ---------------------------IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred ---------------------------HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 5788899999999999999999999999999874 789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhh
Q 005817 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWIN 271 (676)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (676)
++|.+|..++ +..||++.||++|+|++.+.|+ .+.|..|++||+.+.
T Consensus 142 qlWyKY~ymE-E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRyk------------------------------- 188 (677)
T KOG1915|consen 142 QLWYKYIYME-EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYK------------------------------- 188 (677)
T ss_pred HHHHHHHHHH-HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhh-------------------------------
Confidence 9999999999 6899999999999999999998 799999999999873
Q ss_pred hccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccc-CcHHHHH
Q 005817 272 ENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLA-QSDDMHD 350 (676)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~-~~~~~a~ 350 (676)
..+.|+.||++-+-.+|+. .-|..+ ++|+.. +....+.
T Consensus 189 ------------------------------------eieraR~IYerfV~~HP~v-~~wiky----arFE~k~g~~~~aR 227 (677)
T KOG1915|consen 189 ------------------------------------EIERARSIYERFVLVHPKV-SNWIKY----ARFEEKHGNVALAR 227 (677)
T ss_pred ------------------------------------HHHHHHHHHHHHheecccH-HHHHHH----HHHHHhcCcHHHHH
Confidence 3456788888888888764 556554 456532 3567788
Q ss_pred HHHHHHHhcCCCChh---hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHh
Q 005817 351 KILSDMQRDFLVDPK---YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMI 424 (676)
Q Consensus 351 ~il~~~~~~~p~~~~---~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~ 424 (676)
.+|+.++..+.++.. +....|..+.. ++.+++|+.+|+-||...|... ++..|..|+.+..
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~-------------qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEER-------------QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 888888888777633 34455555532 6789999999999999999763 9999999998864
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC--hHHHHHH
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD--SVQLWLL 502 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~--~~~lW~~ 502 (676)
... +|+ ...+.+.+--|+.-+..+|.+.+.|+.|+.++...|+.+..+.+|++|+ .+.|. ....|..
T Consensus 295 d~~----gIE------d~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI-anvpp~~ekr~W~R 363 (677)
T KOG1915|consen 295 DKE----GIE------DAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI-ANVPPASEKRYWRR 363 (677)
T ss_pred chh----hhH------HHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCchhHHHHHHH
Confidence 221 111 1235677788999999999999999999999999999999999999999 77776 2467777
Q ss_pred HHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCC
Q 005817 503 RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE--SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESG 580 (676)
Q Consensus 503 ~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~--~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 580 (676)
||.++++..-.... .-.|+++.+++|+.+|..+|+++ ..++|.+|+++..+..+ +..|.+++...+|.|++
T Consensus 364 YIYLWinYalyeEl--e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~-----l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 364 YIYLWINYALYEEL--EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN-----LTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc-----cHHHHHHHHHHhccCCc
Confidence 77766654210000 01268999999999999999875 56899999986544432 12233334445566667
Q ss_pred cchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC-CCc-hHH
Q 005817 581 FSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNT-SLW 658 (676)
Q Consensus 581 ~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~-~lW 658 (676)
..++..|++++.++++++++|++|++.|...|.+...|.+|+.||..+| +.++||.+|+-|++... +.| -+|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg------dtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG------DTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHhcCcccccHHHHH
Confidence 7899999999999999999999999999999999999999999999999 89999999999999865 444 899
Q ss_pred HHHHHHHhhcCCccc
Q 005817 659 RDYYSTETKVSFSLL 673 (676)
Q Consensus 659 ~~y~~fE~~~G~~~~ 673 (676)
..||+||...|..+.
T Consensus 511 kaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEK 525 (677)
T ss_pred HHhhhhhhhcchHHH
Confidence 999999999887654
No 3
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-45 Score=367.99 Aligned_cols=496 Identities=18% Similarity=0.229 Sum_probs=389.0
Q ss_pred HHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHH
Q 005817 68 RHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY 147 (676)
Q Consensus 68 ~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 147 (676)
+++.++|.++|+.||++|..+..+++.|++||++|+.. ..+++|++++
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn--------------------------------k~vNhARNv~ 130 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKN--------------------------------KQVNHARNVW 130 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh--------------------------------hhHhHHHHHH
Confidence 47788999999999999999999999999999999853 1478899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHccC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817 148 RLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (676)
Q Consensus 148 eral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~ 226 (676)
+||+...|.-.++|.+|+-++...|+ ..++++|+|.+...|. .+.|..|++|++ ..++++.||.+|+|-+-.||+ .
T Consensus 131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fEl-RykeieraR~IYerfV~~HP~-v 207 (677)
T KOG1915|consen 131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFEL-RYKEIERARSIYERFVLVHPK-V 207 (677)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHH-HhhHHHHHHHHHHHHheeccc-H
Confidence 99999999999999999999988885 6899999999999996 799999999998 566999999999999999997 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHH-
Q 005817 227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR- 305 (676)
Q Consensus 227 ~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (676)
+-|+.|++||..+++...+|.++.. +.+.+..+ . .... +...-+.|.
T Consensus 208 ~~wikyarFE~k~g~~~~aR~Vyer-Aie~~~~d----~------~~e~---------------------lfvaFA~fEe 255 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYER-AIEFLGDD----E------EAEI---------------------LFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHH-HHHHhhhH----H------HHHH---------------------HHHHHHHHHH
Confidence 9999999999999887777765432 22111000 0 0000 111112232
Q ss_pred -HhhhHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHhcccCc-H----HHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817 306 -EQGLRVLQTIYSGAVEALPSS--FNLRQRFFEIVEATNLAQS-D----DMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (676)
Q Consensus 306 -~~~~~~a~~iy~~Al~~~p~~--~~~~~~~~~~~~~fe~~~~-~----~~a~~il~~~~~~~p~~~~~w~~la~~~~~~ 377 (676)
.+.++.|+.||+-|+..+|.+ .++...|..+-.+|+.... . ..-+--|+..++.+|.+.++|+.+.++.-.
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~- 334 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEES- 334 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHh-
Confidence 246899999999999999987 5666666666666653211 1 112234788999999999999999988743
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a 454 (676)
.|+.++.+++|++|+.++|... .|..|+-+++....... ....+.++++.+|+.+
T Consensus 335 ------------~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE----------le~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 335 ------------VGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE----------LEAEDVERTRQVYQAC 392 (677)
T ss_pred ------------cCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH----------HHhhhHHHHHHHHHHH
Confidence 3678899999999999998632 67777666655432111 0135689999999999
Q ss_pred HHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHH
Q 005817 455 EAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELL 530 (676)
Q Consensus 455 l~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f 530 (676)
+..-|.. ..+|+.||.+++++.+...|++++..|+ +.||.+ .+...||.++.+.. ++++++++|
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-G~cPK~-KlFk~YIelElqL~----------efDRcRkLY 460 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-GKCPKD-KLFKGYIELELQLR----------EFDRCRKLY 460 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-ccCCch-hHHHHHHHHHHHHh----------hHHHHHHHH
Confidence 9986653 6899999999999999999999999999 999987 68999999999876 489999999
Q ss_pred HHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817 531 KCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL 608 (676)
Q Consensus 531 ~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al 608 (676)
++-|...|. +...|..|+.+-...+ +.++.+|+.|+.....+- ...++..|++|+...|.+++||++|++.+
T Consensus 461 Ekfle~~Pe--~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm----pellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 461 EKFLEFSPE--NCYAWSKYAELETSLGDTDRARAIFELAISQPALDM----PELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHhcChH--hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc----HHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 999987764 3668998887443333 567888998885322221 33556699999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhhccCC--C--------CccchHHHHHHHHHHHhhCCCC------chHHHHHHHHHhhcCCcc
Q 005817 609 ALPRPGLVLYQNCIELENNLASV--G--------DKDSLVNARKLFESALATYDQN------TSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 609 ~~~p~~~~l~~~~i~lE~~~~~~--~--------~~~~~~~aR~lye~al~~~~~~------~~lW~~y~~fE~~~G~~~ 672 (676)
...+. .++|+.++.+|.+..+. + +..++.+||++|++|..++.++ ..+--.|-+||..+|+..
T Consensus 535 ~rt~h-~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~ 613 (677)
T KOG1915|consen 535 DRTQH-VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEG 613 (677)
T ss_pred Hhccc-chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchh
Confidence 86544 45999999999754321 1 1337899999999999987622 267788889999999764
No 4
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.9e-46 Score=386.13 Aligned_cols=500 Identities=17% Similarity=0.257 Sum_probs=372.0
Q ss_pred hhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCC
Q 005817 77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG 156 (676)
Q Consensus 77 ~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~ 156 (676)
....||+.|.|++.++..|+|||++... +..++...||||||..+|+
T Consensus 12 EDvpfEeEilRnp~svk~W~RYIe~k~~---------------------------------sp~k~~~~lYERal~~lp~ 58 (835)
T KOG2047|consen 12 EDVPFEEEILRNPFSVKCWLRYIEHKAG---------------------------------SPDKQRNLLYERALKELPG 58 (835)
T ss_pred cccchHHHHHcCchhHHHHHHHHHHHcc---------------------------------CChHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999998632 2356778999999999999
Q ss_pred CHHHHHHHHHHHHHc---c------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--C
Q 005817 157 DIELWFKYMEFCRQR---K------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT--S 225 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~---~------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~--~ 225 (676)
|.++|..|+..-..+ . +..+++.|+||+.....+|.+|+.|+.+.+ .+|+++..|.+|++||+..|- +
T Consensus 59 sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~-~Q~~iT~tR~tfdrALraLpvtqH 137 (835)
T KOG2047|consen 59 SYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLI-KQGLITRTRRTFDRALRALPVTQH 137 (835)
T ss_pred chHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcchHHHHHHHHHHHHHhCchHhh
Confidence 999999999775443 1 246789999999998899999999999998 688999999999999999994 5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhh
Q 005817 226 EELWVEYLRMELTYL---NKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVD 302 (676)
Q Consensus 226 ~~lW~~y~~~e~~~~---~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (676)
..+|.-|++|-...+ ..++..+++|..+.+.. ++-+.
T Consensus 138 ~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~----------------------------------------eeyie 177 (835)
T KOG2047|consen 138 DRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR----------------------------------------EEYIE 177 (835)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH----------------------------------------HHHHH
Confidence 789999999987653 33455555666543210 01111
Q ss_pred hHH-HhhhHHHHHHHHHHHh-------cCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC-hhhHHHHHHH
Q 005817 303 LFR-EQGLRVLQTIYSGAVE-------ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARL 373 (676)
Q Consensus 303 ~~~-~~~~~~a~~iy~~Al~-------~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~-~~~w~~la~~ 373 (676)
.+- ....+.|...|...+. ..|++..+|..++++..+.......-..+.++..++..||+. +.+|..+|.+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 111 1244566666666653 457788999999999988764334456889999999999999 7789999999
Q ss_pred hccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccc----------cc-cC-----
Q 005817 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKE----------ET-RD----- 433 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~----------d~-~~----- 433 (676)
|+. .|.+++|+++|++|+..+.+.. +++.|+.|+++......+ ++ .+
T Consensus 258 YIr-------------~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 258 YIR-------------SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHH-------------hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 987 5889999999999999988754 999999999875432111 00 00
Q ss_pred -------------CCCC---------h----------------------------------------------hhhhhHH
Q 005817 434 -------------SELP---------S----------------------------------------------HVEHYIS 445 (676)
Q Consensus 434 -------------~~~~---------~----------------------------------------------~~~~~~~ 445 (676)
++|+ + -..|.++
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 0000 0 0124678
Q ss_pred HHHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----------------ChHHHHHHHH
Q 005817 446 HLLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-----------------DSVQLWLLRI 504 (676)
Q Consensus 446 ~a~~iye~al~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P-----------------~~~~lW~~~i 504 (676)
.||.++++|+..+... ..+|+.|++++++..+++.|+++.++|+..+-+ +|..+|..|+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 8999999999885443 468999999999999999999999999832111 2678999999
Q ss_pred HHHHHhcccc-------------CCCC----Ch----------------------------------------------h
Q 005817 505 SVEIRCVTRN-------------SFSP----SK----------------------------------------------A 521 (676)
Q Consensus 505 ~l~~~~~~~~-------------~~~p----~~----------------------------------------------~ 521 (676)
++++..|+.. ..+| |+ .
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 9999887542 2334 21 1
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~ 599 (676)
.+++++++|++||..||+..+..|+..|+.+.++.+ ...-.++++|...+.+.. ..+++..|+......-|+..
T Consensus 565 klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~----~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ----RLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHhCCcc
Confidence 346666666666666666666666666665443332 223345555554443332 34455566666666677888
Q ss_pred HHHHHHHHHcCCCCCH--HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC--CCchHHHHHHHHHhhcCCccc
Q 005817 600 AREMYKRFLALPRPGL--VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 600 Ar~iy~~al~~~p~~~--~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~--~~~~lW~~y~~fE~~~G~~~~ 673 (676)
+|.||++||+.-|.+. .++..+++||.++| +++|||++|-.+.+.++ .++++|..|-.||.+|||.+.
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklG------EidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLG------EIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhh------hHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 8999999988766653 48899999999999 99999999999999987 677999999999999999764
No 5
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=329.31 Aligned_cols=547 Identities=17% Similarity=0.204 Sum_probs=408.2
Q ss_pred hHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhh--cccchhhhhhhhccccc
Q 005817 56 ELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSI--GRDEGRERRVSKKMKKS 133 (676)
Q Consensus 56 e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~--~~~~~~~~~~~~~~~~~ 133 (676)
=|.||++..-.+..+|.||.+.|..+-.-...+|++++.|+..+..|...+++-.+|+-.+ |..+||. .++...
T Consensus 249 YLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS----eDvWLe 324 (913)
T KOG0495|consen 249 YLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS----EDVWLE 324 (913)
T ss_pred HHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch----HHHHHH
Confidence 4677777777788999999999999999999999999999999999999999999887322 3333332 222222
Q ss_pred cccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHH
Q 005817 134 VSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARA 213 (676)
Q Consensus 134 ~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~ 213 (676)
.++.....-+..|...|++..|.|+.||.+-++++.... .-.+|+.+||+..|++..||..++.++ +.+.||.
T Consensus 325 aiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~--~K~RVlRKALe~iP~sv~LWKaAVelE-----~~~dari 397 (913)
T KOG0495|consen 325 AIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTK--NKKRVLRKALEHIPRSVRLWKAAVELE-----EPEDARI 397 (913)
T ss_pred HHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHH--HHHHHHHHHHHhCCchHHHHHHHHhcc-----ChHHHHH
Confidence 222233445778888899999999999998888865432 336788888888898888998887776 3344888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc-hhHHhhhhhcc------------------
Q 005817 214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRD-ADEKRWINENK------------------ 274 (676)
Q Consensus 214 ~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~-~~~~~~~~~~~------------------ 274 (676)
++.||+++||.|.++|+.|+++|..... +.+|..+-+.++.++.. +....+.+.+.
T Consensus 398 lL~rAveccp~s~dLwlAlarLetYenA-----kkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ 472 (913)
T KOG0495|consen 398 LLERAVECCPQSMDLWLALARLETYENA-----KKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQA 472 (913)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHH-----HHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 8899999999888889888888875422 11233322222222100 00000000000
Q ss_pred -------ccccCCC---CCCCCC----CC------CCCcc-h---hhhhhhhhHH-HhhhHHHHHHHHHHHhcCCCchhH
Q 005817 275 -------GLFMPLD---GEVENT----DG------SQPEN-M---ESQKSVDLFR-EQGLRVLQTIYSGAVEALPSSFNL 329 (676)
Q Consensus 275 -------~~~~~~~---~~~~~~----~~------~~~~~-~---~~~~~~~~~~-~~~~~~a~~iy~~Al~~~p~~~~~ 329 (676)
+.|+.-. +..+.. .+ .+++. + .+.+-.+.+. .+.++.|++||..|++.+|....+
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl 552 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL 552 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH
Confidence 0111000 000000 00 01111 1 1222223332 246789999999999999999999
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817 330 RQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS 409 (676)
Q Consensus 330 ~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~ 409 (676)
|.....+-..+ ++.+....++.+++...|..+.+|+++|+..+. .+++..|+.++.+|.+..|+
T Consensus 553 Wlra~~~ek~h---gt~Esl~Allqkav~~~pkae~lwlM~ake~w~-------------agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 553 WLRAAMFEKSH---GTRESLEALLQKAVEQCPKAEILWLMYAKEKWK-------------AGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHHHHhc---CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh-------------cCCcHHHHHHHHHHHHhCCC
Confidence 98764333222 467889999999999999999999999998876 47789999999999999997
Q ss_pred hh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817 410 SM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 410 ~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~a 488 (676)
+. +|.+-++++-. ...+++||.++.+|... ..++.+|+.++.++.-+++.++|+.+++++
T Consensus 617 seeiwlaavKle~e------------------n~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFE------------------NDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred cHHHHHHHHHHhhc------------------cccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 55 99888777654 14589999999999987 456899999999999999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHH
Q 005817 489 CSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEI 566 (676)
Q Consensus 489 l~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~ 566 (676)
+ +.+|+...+|++..+++++.+ +++.+++.|..+++.||. +.+||......-++.+ ..++.++++
T Consensus 678 l-k~fp~f~Kl~lmlGQi~e~~~----------~ie~aR~aY~~G~k~cP~--~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 678 L-KSFPDFHKLWLMLGQIEEQME----------NIEMAREAYLQGTKKCPN--SIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred H-HhCCchHHHHHHHhHHHHHHH----------HHHHHHHHHHhccccCCC--CchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 9 999999999999999999875 589999999999999996 4789998766444443 456778888
Q ss_pred HHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCC----------C----
Q 005817 567 ALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASV----------G---- 632 (676)
Q Consensus 567 a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~----------~---- 632 (676)
+... +|++ ..++..-+.++.+.|+.+.|+.+..+|+..||.+..+|...|.||...+.. +
T Consensus 745 arlk-NPk~-----~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 745 ARLK-NPKN-----ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHhc-CCCc-----chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 8753 4544 244447789999999999999999999999999999999999998653221 1
Q ss_pred ----------CccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817 633 ----------DKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 633 ----------~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (676)
+...++.+|+.|++|+..+|+..++|-.+..||..||+.+
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHH
Confidence 1337899999999999999999999999999999999754
No 6
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=100.00 E-value=5.5e-41 Score=318.71 Aligned_cols=196 Identities=37% Similarity=0.665 Sum_probs=187.0
Q ss_pred hHHHHHHHHHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q 005817 42 MADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEG 121 (676)
Q Consensus 42 ma~~v~~~~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~ 121 (676)
|++.||..|||||||++||.++||||++|++-|++.|+.||.+|+|+...+.||++||+||.++++||.+|.+++..+-
T Consensus 1 m~ekiqyymEq~IpEleDl~ekgiFs~dE~~~IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~- 79 (435)
T COG5191 1 MVEKIQYYMEQMIPELEDLKEKGIFSPDELRRIVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGK- 79 (435)
T ss_pred CchHHHHHHHHhchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653311
Q ss_pred hhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 122 RERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW 200 (676)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~ 200 (676)
+.+.+|+++++++..+|.|+..+||+|+++|..|+.+..+.| +..+.++|..||+.||++.++|+.++.+
T Consensus 80 ---------K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~ 150 (435)
T COG5191 80 ---------KASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAF 150 (435)
T ss_pred ---------cccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccc
Confidence 578899999999999999999999999999999999998887 5789999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 005817 201 EFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARK 247 (676)
Q Consensus 201 e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~ 247 (676)
+++.++|++.+|.+|++|||++|+++.+|.+|++||+.++.++-+|+
T Consensus 151 e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~yiTKL~~R~ 197 (435)
T COG5191 151 ELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRR 197 (435)
T ss_pred hhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999888
No 7
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=282.33 Aligned_cols=444 Identities=19% Similarity=0.211 Sum_probs=356.8
Q ss_pred cccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHH
Q 005817 132 KSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTA 210 (676)
Q Consensus 132 ~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~ 210 (676)
.+-.+...+++++.|++.....+|.++.-|+.-+.++...| ...++++..+.++.+|++.++|+.++++. ..+.
T Consensus 259 ~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh-----p~d~ 333 (913)
T KOG0495|consen 259 TSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH-----PPDV 333 (913)
T ss_pred CccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC-----ChHH
Confidence 34456777899999999999999999999999999998877 57889999999999999999999999874 4566
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817 211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (676)
Q Consensus 211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (676)
|+.+...|++++|+|..||+..+.+|....++-+. ++.+.+..++ ++..|.. .+.+
T Consensus 334 aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RV----lRKALe~iP~-----sv~LWKa-----AVel---------- 389 (913)
T KOG0495|consen 334 AKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRV----LRKALEHIPR-----SVRLWKA-----AVEL---------- 389 (913)
T ss_pred HHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHH----HHHHHHhCCc-----hHHHHHH-----HHhc----------
Confidence 99999999999999999999999999876555443 4433333222 3333321 0011
Q ss_pred CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHH
Q 005817 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~l 370 (676)
.+.+.|+.++.+|++.+|.+.++|..+ ++++ +++.++++++++.+.-|+++..|+..
T Consensus 390 ----------------E~~~darilL~rAveccp~s~dLwlAl----arLe---tYenAkkvLNkaRe~iptd~~IWita 446 (913)
T KOG0495|consen 390 ----------------EEPEDARILLERAVECCPQSMDLWLAL----ARLE---TYENAKKVLNKAREIIPTDREIWITA 446 (913)
T ss_pred ----------------cChHHHHHHHHHHHHhccchHHHHHHH----HHHH---HHHHHHHHHHHHHhhCCCChhHHHHH
Confidence 022348999999999999999999875 3443 67899999999999999999999999
Q ss_pred HHHhccccCCC---------------C-------------------C--------------CCc---------------C
Q 005817 371 ARLKMTDSVSK---------------D-------------------G--------------TSE---------------D 387 (676)
Q Consensus 371 a~~~~~~~~~~---------------~-------------------~--------------~~~---------------~ 387 (676)
|+++-.+++.. . + .++ .
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 99885443210 0 0 000 0
Q ss_pred cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
+..+.++-|+.||..+|+..|..+ +|...+.|+..+ |..+....++++|+...|..+.+|+
T Consensus 527 ~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~h------------------gt~Esl~Allqkav~~~pkae~lwl 588 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSH------------------GTRESLEALLQKAVEQCPKAEILWL 588 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhc------------------CcHHHHHHHHHHHHHhCCcchhHHH
Confidence 112346789999999999999766 999999888764 5578899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW 546 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW 546 (676)
.|+.-.+..|++..|+.++..|. ..+|+|.++|+..+.++..+. ..++++.+|.+|-...+. ..+|
T Consensus 589 M~ake~w~agdv~~ar~il~~af-~~~pnseeiwlaavKle~en~----------e~eraR~llakar~~sgT---eRv~ 654 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAF-EANPNSEEIWLAAVKLEFEND----------ELERARDLLAKARSISGT---ERVW 654 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHH-HhCCCcHHHHHHHHHHhhccc----------cHHHHHHHHHHHhccCCc---chhh
Confidence 99999999999999999999999 899999999999999997654 479999999999775543 4578
Q ss_pred HHHHHHHHhh---hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005817 547 LMALKFFMNQ---KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIE 623 (676)
Q Consensus 547 ~~~l~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~ 623 (676)
..++. ++.. .+.+.++++.+++.+ |+ ...++.+..+.+-+.++++.||..|...+..+|.+..+|.....
T Consensus 655 mKs~~-~er~ld~~eeA~rllEe~lk~f-p~-----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 655 MKSAN-LERYLDNVEEALRLLEEALKSF-PD-----FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred HHHhH-HHHHhhhHHHHHHHHHHHHHhC-Cc-----hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 77654 3322 245566677777654 33 24555566777888899999999999999999999999999999
Q ss_pred HHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817 624 LENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 624 lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (676)
||...+ ++.+||.+++++.-.+|.+..+|+.-++||..+|+.+
T Consensus 728 leEk~~------~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 728 LEEKDG------QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHhc------chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 998887 7899999999999999999999999999999999865
No 8
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.95 E-value=3.7e-24 Score=221.99 Aligned_cols=524 Identities=12% Similarity=0.142 Sum_probs=319.5
Q ss_pred HHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHh
Q 005817 74 IVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR 153 (676)
Q Consensus 74 i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~ 153 (676)
-.+.+-.||+.+.--+.+-.-|-+|++. |...+...+ .. .....-....|+||+..
T Consensus 42 ~k~~~~lYERal~~lp~sykiW~~YL~~----------R~~~vk~~~----------~T----~~~~~~vn~c~er~lv~ 97 (835)
T KOG2047|consen 42 DKQRNLLYERALKELPGSYKIWYDYLKA----------RRAQVKHLC----------PT----DPAYESVNNCFERCLVF 97 (835)
T ss_pred hHHHHHHHHHHHHHCCCchHHHHHHHHH----------HHHHhhccC----------CC----ChHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999965 222221111 11 12455667899999998
Q ss_pred CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~--~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~ 230 (676)
....+.+|+.|++|+.+++ ..+.+.+|+|||...|- +..+|-.|++|. +..+-.+.+..+|.|-|+..|.+.+=++
T Consensus 98 mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv-~~~~lPets~rvyrRYLk~~P~~~eeyi 176 (835)
T KOG2047|consen 98 MHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFV-ESHGLPETSIRVYRRYLKVAPEAREEYI 176 (835)
T ss_pred HhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHH-HhCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888899999999999988 47889999999999996 689999999998 5787888999999999999998766666
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCC-CCCCCC---CCC-----cc-hhhhhh
Q 005817 231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGE-VENTDG---SQP-----EN-MESQKS 300 (676)
Q Consensus 231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~-----~~-~~~~~~ 300 (676)
+|+..-....+....-..++.... ...+.++.+.++|..+++. ..+|+. .++ .| ..+.++
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~----------f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDE----------FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchh----------hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 666543322221111111222110 1122233344455544332 233332 111 11 246778
Q ss_pred hhhHHH---------hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHH-----------------------H
Q 005817 301 VDLFRE---------QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDD-----------------------M 348 (676)
Q Consensus 301 ~~~~~~---------~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~-----------------------~ 348 (676)
++.+|. |.++.|+.+|+.|+..+.+..+|- ..++.|..|++..... .
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt-~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT-QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH-HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 888874 468999999999999988777775 4668888886421000 0
Q ss_pred HHHHH--------HHHHhcCCCChhhHHHHHHHhccccCC-----------CCCCCc--------------CcchhHHHH
Q 005817 349 HDKIL--------SDMQRDFLVDPKYWDWLARLKMTDSVS-----------KDGTSE--------------DIVPSQMQK 395 (676)
Q Consensus 349 a~~il--------~~~~~~~p~~~~~w~~la~~~~~~~~~-----------~~~~~~--------------~~~~~~~~~ 395 (676)
.++++ +-+++.+|++...|.....++-..... .++..+ -+..++++.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 11111 335677888888887766655321110 011110 011456788
Q ss_pred HHHHHHHHhhcc-Cch----hHHHHHHHHHHHHhcCc-------------cccc-----cCCCCCh--------------
Q 005817 396 AIQVYEEALKNV-PSS----MIFDLYTKFLMDMIAPK-------------KEET-----RDSELPS-------------- 438 (676)
Q Consensus 396 A~~~ye~al~~~-~~~----~lw~~y~~~~~~~~~~~-------------~~d~-----~~~~~~~-------------- 438 (676)
||.+|++|++.. ++. .+|-.|+..++..-..+ .... ..+.|..
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 888888887642 232 15555555444321100 0000 0000000
Q ss_pred --hhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--CCChHHHHHHHHHHHH-Hhccc
Q 005817 439 --HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK--LSDSVQLWLLRISVEI-RCVTR 513 (676)
Q Consensus 439 --~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~--~P~~~~lW~~~i~l~~-~~~~~ 513 (676)
.--|.++..+.+|++.+..-..+|.+-++||-|+..+.-++++.++|++++ .. +|+-.++|..|+.-.. +.|..
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI-~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGI-SLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC-ccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 001334555555555555555555555555555555555555555555555 42 2334455555543222 22211
Q ss_pred c------------CCCC-C--------h-------hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHH
Q 005817 514 N------------SFSP-S--------K-------ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKL 563 (676)
Q Consensus 514 ~------------~~~p-~--------~-------~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~ 563 (676)
. ..+| . | +-...+..+|++|..+++......+|..|+..-...- ...+.+
T Consensus 565 klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 0 0111 0 0 1245678899999999988888889988765433221 346789
Q ss_pred HHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhccCCCCccchHHHH
Q 005817 564 VEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP--GLVLYQNCIELENNLASVGDKDSLVNAR 641 (676)
Q Consensus 564 ~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~--~~~l~~~~i~lE~~~~~~~~~~~~~~aR 641 (676)
|++|+.+++... ...+-..|++++.+.|.+++||.||.-+-..++| .+.+|..+-.||...| +-+-.|
T Consensus 645 YekaIe~Lp~~~----~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG------nedT~k 714 (835)
T KOG2047|consen 645 YEKAIESLPDSK----AREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG------NEDTYK 714 (835)
T ss_pred HHHHHHhCChHH----HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC------CHHHHH
Confidence 999998765432 2334445788899999999999999998776655 4679999999999998 445555
Q ss_pred HHH
Q 005817 642 KLF 644 (676)
Q Consensus 642 ~ly 644 (676)
+..
T Consensus 715 eML 717 (835)
T KOG2047|consen 715 EML 717 (835)
T ss_pred HHH
Confidence 443
No 9
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.93 E-value=1.6e-22 Score=206.53 Aligned_cols=434 Identities=15% Similarity=0.168 Sum_probs=307.0
Q ss_pred HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHH
Q 005817 82 EYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELW 161 (676)
Q Consensus 82 E~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW 161 (676)
+.+|.-+|.++..|-.-|+.-.+ ..+..++..||+.+..||.+...|
T Consensus 10 ~~rie~nP~di~sw~~lire~qt---------------------------------~~~~~~R~~YEq~~~~FP~s~r~W 56 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQT---------------------------------QPIDKVRETYEQLVNVFPSSPRAW 56 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHcc---------------------------------CCHHHHHHHHHHHhccCCCCcHHH
Confidence 78899999999999888874311 136778999999999999999999
Q ss_pred HHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHH
Q 005817 162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV-------CPTSEELWVEYL 233 (676)
Q Consensus 162 ~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~-------~p~~~~lW~~y~ 233 (676)
..||+-+...+ +..+.++|.|||..-= +.+||..|+.+-.+.++....+|..+-+|..+ .+.|..+|.+|+
T Consensus 57 ~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi 135 (656)
T KOG1914|consen 57 KLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYI 135 (656)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 99999998876 6899999999998644 38999999999888888888888776666543 246789999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (676)
.|.... . + ..+|. + ++.++.+|
T Consensus 136 ~FL~~v-e-----------a------------~gk~e----------------------------e------~QRI~~vR 157 (656)
T KOG1914|consen 136 NFLEGV-E-----------A------------VGKYE----------------------------E------NQRITAVR 157 (656)
T ss_pred HHHHcc-c-----------c------------cccHH----------------------------H------HHHHHHHH
Confidence 986532 0 0 00111 1 13568889
Q ss_pred HHHHHHHhcCCCc-hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817 314 TIYSGAVEALPSS-FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (676)
Q Consensus 314 ~iy~~Al~~~p~~-~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~ 392 (676)
.+|++|+...-.+ ..+|.+| ..||..-+...+++++.... ..
T Consensus 158 riYqral~tPm~nlEkLW~DY----~~fE~~IN~~tarK~i~e~s---------------------------------~~ 200 (656)
T KOG1914|consen 158 RIYQRALVTPMHNLEKLWKDY----EAFEQEINIITARKFIGERS---------------------------------PE 200 (656)
T ss_pred HHHHHHhcCccccHHHHHHHH----HHHHHHHHHHHHHHHHHhhC---------------------------------HH
Confidence 9999999986555 3566554 55654333344554443321 23
Q ss_pred HHHHHHHHHHH------hhc----cC---c------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 393 MQKAIQVYEEA------LKN----VP---S------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 393 ~~~A~~~ye~a------l~~----~~---~------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
+..|+.+|++- +.. +| | ..+|..+|+++.+.-.. +.+ ..-...+..-+|+.
T Consensus 201 Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~-t~~---------~~~~~~Rv~yayeQ 270 (656)
T KOG1914|consen 201 YMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR-TLD---------GTMLTRRVMYAYEQ 270 (656)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc-ccc---------ccHHHHHHHHHHHH
Confidence 44444444432 221 12 1 12899999999874322 111 00123467788999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQLGK--------------LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~~~~--------------~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
++..-+..|++|..|..++...++ .++|..+|++++......+..+...+++.++..-.
T Consensus 271 ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~------- 343 (656)
T KOG1914|consen 271 CLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD------- 343 (656)
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc-------
Confidence 999989999999999999988887 78899999999954444567788888888775421
Q ss_pred hhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817 520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~ 597 (676)
++..+...+++++++.....+ -.-+|..++++..+.. +.++.+|.+|.+....- ...-+..+++++. -.++.
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----hhVfVa~A~mEy~-cskD~ 417 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----HHVFVAAALMEYY-CSKDK 417 (656)
T ss_pred cchhhhhHHHHHHHHhhhccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----chhhHHHHHHHHH-hcCCh
Confidence 112455667788877643221 2235777777655443 56788999877521110 0112222344443 36889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh--CC-CCchHHHHHHHHHhhcCCccc
Q 005817 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT--YD-QNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~--~~-~~~~lW~~y~~fE~~~G~~~~ 673 (676)
+-|..||+-++.-.+.++.+-.+|+++-...+ +-+++|.+||+++.. .+ +...+|..|++||.++||..+
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 99999999999999999999999999988877 779999999999998 33 456999999999999999754
No 10
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.89 E-value=3.5e-19 Score=182.34 Aligned_cols=426 Identities=16% Similarity=0.227 Sum_probs=288.6
Q ss_pred HHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHH
Q 005817 68 RHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY 147 (676)
Q Consensus 68 ~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 147 (676)
..+.+.|-+.|..+|..+..-|...+-|..||+.|+.- ...+.+..+|
T Consensus 29 e~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s--------------------------------kdfe~VEkLF 76 (656)
T KOG1914|consen 29 EAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELAS--------------------------------KDFESVEKLF 76 (656)
T ss_pred HHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh--------------------------------hhHHHHHHHH
Confidence 34455788899999999999999999999999999642 1367788999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcc---C---chHHHHHHHHHHh---CCCCHHHHHHHHHHHH--------HhCCCHHH
Q 005817 148 RLAVMRFKGDIELWFKYMEFCRQRK---N---GRMKKVLAQVIRF---HPKVPGVWIYAAAWEF--------DHNLNVTA 210 (676)
Q Consensus 148 eral~~~p~~~~lW~~y~~~~~~~~---~---~~~~~~~~ral~~---~P~~~~lW~~~a~~e~--------~~~~~~~~ 210 (676)
.|||..-- +++||..|+.+.++.+ . ..+.++|+=++.. .|.+..+|..|+.|.- +.+..++.
T Consensus 77 ~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~ 155 (656)
T KOG1914|consen 77 SRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITA 155 (656)
T ss_pred HHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHH
Confidence 99998865 6999999999998763 1 2456788888775 5678899999998741 23347999
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCC
Q 005817 211 ARALMQNGLRVCPTS-EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG 289 (676)
Q Consensus 211 Ar~~~~ral~~~p~~-~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (676)
.|++|+|||.+--++ +++|..|..||.. ++.+.+|+-+....
T Consensus 156 vRriYqral~tPm~nlEkLW~DY~~fE~~-IN~~tarK~i~e~s------------------------------------ 198 (656)
T KOG1914|consen 156 VRRIYQRALVTPMHNLEKLWKDYEAFEQE-INIITARKFIGERS------------------------------------ 198 (656)
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHHH-HHHHHHHHHHHhhC------------------------------------
Confidence 999999999864444 7899999999986 56666666432211
Q ss_pred CCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhc----------CCC--------chhHHHHHHHHHHHhccc---C--cH
Q 005817 290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEA----------LPS--------SFNLRQRFFEIVEATNLA---Q--SD 346 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~----------~p~--------~~~~~~~~~~~~~~fe~~---~--~~ 346 (676)
..+..|+.+|+..... +|. ..++|..+++.-..-.+. + -.
T Consensus 199 -----------------~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~ 261 (656)
T KOG1914|consen 199 -----------------PEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT 261 (656)
T ss_pred -----------------HHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH
Confidence 1233444444433211 111 146787777654432221 1 12
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCC-CCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHH
Q 005817 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS-KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDM 423 (676)
Q Consensus 347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~-~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~ 423 (676)
...--++++++.-.+-++++|...+.+..+.+.- +......+.+..-++|..+||+++..+.... ++..|+++++..
T Consensus 262 ~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 262 RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 3445578999999999999999888876542110 0000011223446789999999998765432 778888888764
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-cCCChHHHHH
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-DIAHRYVTLYLQLGKLDEARKLAAKLCSG-KLSDSVQLWL 501 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~-~lw~~~~~l~~~~~~~~~A~~l~~~al~~-~~P~~~~lW~ 501 (676)
.. + +..++.-++|++++...-.++ -+|+.|..+..+...++.||.++.+|-+. ..|+.+-+-.
T Consensus 342 ~~----~-----------n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 342 YD----D-----------NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred cc----c-----------chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 31 1 235567778888777633333 36888998888888888899888887621 1222333333
Q ss_pred HHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCc
Q 005817 502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581 (676)
Q Consensus 502 ~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 581 (676)
.++ +-.... |..-+..+|+-+|+..+ + .+
T Consensus 407 A~m--Ey~csk---------D~~~AfrIFeLGLkkf~-----------------------------------d-----~p 435 (656)
T KOG1914|consen 407 ALM--EYYCSK---------DKETAFRIFELGLKKFG-----------------------------------D-----SP 435 (656)
T ss_pred HHH--HHHhcC---------ChhHHHHHHHHHHHhcC-----------------------------------C-----Ch
Confidence 332 222211 23444444444443222 1 13
Q ss_pred chHHHHHHHHHHhcCHHHHHHHHHHHHcC--CCC-CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 582 SLPSAIINLVIQKDGIQQAREMYKRFLAL--PRP-GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 582 ~~~~~y~~~~~~~g~~~~Ar~iy~~al~~--~p~-~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
.....|++|+...++...||.+|++++.. ++. +..+|..++++|...| +++.++++=.+-...+|
T Consensus 436 ~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG------dL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 436 EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG------DLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHhcc
Confidence 44557999999999999999999999875 333 4569999999999999 89999999888877777
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=2.9e-18 Score=204.18 Aligned_cols=439 Identities=12% Similarity=-0.003 Sum_probs=318.5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....+..++++.+..+|++...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|..+|++
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDDAIQRFEK 524 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 3567788888999999999999988888887776 478899999999999999999988888875 67899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
++...|.+..+|..++.+....+....+... +..+.. .+|... ...
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~---~~~~~~------------------------------~~~ 570 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAW-LEKAAE---LNPQEI------------------------------EPA 570 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHH---hCccch------------------------------hHH
Confidence 9999998888888887766543322222111 111000 000000 000
Q ss_pred hhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 298 QKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 298 ~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
......+ ..++++.|..++++++...|.+...|..+...+... +..+.+...+++++...|+++..|..++..+..
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA---GDLNKAVSSFKKLLALQPDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 0111111 235678889999999888888877777766655432 356788888999998899988888888887754
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al 455 (676)
.+++++|..+|+++++..|+.. .|...+..... .|..+.|..+++.+.
T Consensus 648 -------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 648 -------------MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA------------------AKRTESAKKIAKSLQ 696 (899)
T ss_pred -------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHH
Confidence 4678899999999998777643 55444444333 366888999999998
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 456 ~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
...|.++..+...+..+...|++++|...+++++ ...|++ ..+...+......| +.+++.+.+++++.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g----------~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL-KRAPSS-QNAIKLHRALLASG----------NTAEAVKTLEAWLK 764 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCc-hHHHHHHHHHHHCC----------CHHHHHHHHHHHHH
Confidence 8888888899889999999999999999999999 777877 56666666666655 46888888999988
Q ss_pred hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Q 005817 536 KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP 613 (676)
Q Consensus 536 ~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~ 613 (676)
..|... ..+......+...+ +.+...|++++.. .|.. +......+......|+ .+|...+++++...|.
T Consensus 765 ~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~-----~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 765 THPNDA--VLRTALAELYLAQKDYDKAIKHYRTVVKK-APDN-----AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred hCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 776542 33443333343322 4455566666542 3332 2222223333555677 8899999999998888
Q ss_pred CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817 614 GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 614 ~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (676)
+..++..++.+....+ +.+.|..+|+++++..|.++.++..++..-...|+.+.
T Consensus 836 ~~~~~~~~~~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 836 IPAILDTLGWLLVEKG------EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred CcHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 8888888888877777 89999999999999999888999999999988888754
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=6.7e-18 Score=201.09 Aligned_cols=416 Identities=13% Similarity=0.032 Sum_probs=315.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....+...|++++...|++...|..++......| ...+...|++++..+|.+...|...+.... ..|+.+.|...|++
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL-RTGNEEEAVAWLEK 558 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 3567899999999999999999999999988877 578999999999999999999999999886 68899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
++..+|.+...|...+......+....+... +..... ..|. ++.. +
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~---~~~~----------~~~~--------------------~ 604 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAI-LNEAAD---AAPD----------SPEA--------------------W 604 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHH-HHHHHH---cCCC----------CHHH--------------------H
Confidence 9999999988888887765543332222211 111000 0000 0000 1
Q ss_pred hhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 298 QKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 298 ~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
......+ ..++++.|...|+++++..|++...+..+..++... +..+.+..++++++..+|++...|..++..+..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM---KNYAKAITSLKRALELKPDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1111112 235789999999999999998877776665555433 357889999999999999999999999998865
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al 455 (676)
.++++.|..+++......|... .|......... .|+++.|...|++++
T Consensus 682 -------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 682 -------------AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR------------------QKDYPAAIQAYRKAL 730 (899)
T ss_pred -------------cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH------------------CCCHHHHHHHHHHHH
Confidence 4779999999999988777544 44333322222 367899999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 456 ~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
...|.+ ..+..++..+...|++++|...+++++ ...|++...+...+.+....| +.+++.+.|++++.
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQK----------DYDKAIKHYRTVVK 798 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCc----------CHHHHHHHHHHHHH
Confidence 998877 778889999999999999999999999 889999999999988888766 47899999999998
Q ss_pred hcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 005817 536 KVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG 614 (676)
Q Consensus 536 ~~~~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~ 614 (676)
..|.. ..++......+...+ ..+...+++++. ..|+. +.....++..+...|++++|..+|++++...|.+
T Consensus 799 ~~p~~--~~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 799 KAPDN--AVVLNNLAWLYLELKDPRALEYAEKALK-LAPNI-----PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred hCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHh-hCCCC-----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 87653 233433222222222 234445555553 23333 3444456677888999999999999999998888
Q ss_pred HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh
Q 005817 615 LVLYQNCIELENNLASVGDKDSLVNARKLFESALA 649 (676)
Q Consensus 615 ~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~ 649 (676)
..++..++..-...| +.+.|+++|++++.
T Consensus 871 ~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 871 AAIRYHLALALLATG------RKAEARKELDKLLN 899 (899)
T ss_pred hHHHHHHHHHHHHcC------CHHHHHHHHHHHhC
Confidence 888888888888888 88999999999873
No 13
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=99.85 E-value=2.6e-21 Score=154.07 Aligned_cols=83 Identities=59% Similarity=0.921 Sum_probs=74.3
Q ss_pred HHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhc
Q 005817 50 LERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKK 129 (676)
Q Consensus 50 ~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~ 129 (676)
||+|||||++|+++||||++||++|+++|+.|||+|+++++.+.||++||+||+++++|+++|+++++.
T Consensus 1 LE~~vpele~l~~~~lFt~~EI~~IvkkR~~fEy~L~rr~~~~~Dfl~YI~yE~~L~~L~~~R~~~~~~----------- 69 (83)
T PF08640_consen 1 LERMVPELEDLERKGLFTKEEIREIVKKRRDFEYKLQRRGKKKSDFLRYIEYEMNLEKLRRKRRKRLGI----------- 69 (83)
T ss_pred CchhhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------
Confidence 699999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred cccccccchhHHHH
Q 005817 130 MKKSVSDFSGVARI 143 (676)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (676)
.+.+.+++++++||
T Consensus 70 ~~~~~~~~~i~~RI 83 (83)
T PF08640_consen 70 KKNSEIEYSIVRRI 83 (83)
T ss_pred CccchhhhhHhccC
Confidence 14456777776653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=4.2e-17 Score=169.20 Aligned_cols=379 Identities=13% Similarity=0.030 Sum_probs=277.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817 148 RLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (676)
Q Consensus 148 eral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~ 226 (676)
..|+++.|.-.+.+..|++..+..| ...+...|..++.+.|+..+.|+-.+.-.. .+|+.+.|-..|..||+.+|+..
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~-~~~~~~~a~~~~~~alqlnP~l~ 184 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALV-TQGDLELAVQCFFEALQLNPDLY 184 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHH-hcCCCcccHHHHHHHHhcCcchh
Confidence 4688899999999999999998887 578999999999999999999999999886 68899999999999999999742
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH
Q 005817 227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE 306 (676)
Q Consensus 227 ~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (676)
-+-.....+.. .+
T Consensus 185 ca~s~lgnLlk-------------------------------------------------------------------a~ 197 (966)
T KOG4626|consen 185 CARSDLGNLLK-------------------------------------------------------------------AE 197 (966)
T ss_pred hhhcchhHHHH-------------------------------------------------------------------hh
Confidence 22111111110 01
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
|.+..|...|.+|++..|.-.-.|.. +...|..++.--.+.+.++++++..|.-..+++.++..+-+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsn---Lg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke---------- 264 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSN---LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE---------- 264 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehh---cchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH----------
Confidence 34567888899999888854334443 33445544445578888899999999999999888887744
Q ss_pred CcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.+.+++|...|++|+...|...+- |-+.- +....+|.++-|+..|++|++..|.-++.+.
T Consensus 265 ---~~~~d~Avs~Y~rAl~lrpn~A~a--~gNla---------------~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 265 ---ARIFDRAVSCYLRALNLRPNHAVA--HGNLA---------------CIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred ---HhcchHHHHHHHHHHhcCCcchhh--ccceE---------------EEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 467889999999999877763311 10000 0112357889999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW 546 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW 546 (676)
..+.-+...|+..+|...|.+|+ ..+|+.++-...........+ .++.+..+|.+|+.-.|.-.+ -.
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL-~l~p~hadam~NLgni~~E~~----------~~e~A~~ly~~al~v~p~~aa--a~ 391 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKAL-RLCPNHADAMNNLGNIYREQG----------KIEEATRLYLKALEVFPEFAA--AH 391 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHH-HhCCccHHHHHHHHHHHHHhc----------cchHHHHHHHHHHhhChhhhh--hh
Confidence 99999999999999999999999 889998888887777776655 378888899999986654211 11
Q ss_pred HHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHH---HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005817 547 LMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRFLALPRPGLVLYQNC 621 (676)
Q Consensus 547 ~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~---~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~ 621 (676)
......+...+ +.+-.-|+.|+. +. |..+.+|... +...|+.+.|.+.|.+||...|.-...+...
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykealr-I~--------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALR-IK--------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHh-cC--------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 11112222222 122222444443 22 3444455443 5668899999999999999888888888888
Q ss_pred HHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc
Q 005817 622 IELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (676)
Q Consensus 622 i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~ 655 (676)
+-+....| ++..|.+-|+.|+...|+.+
T Consensus 463 asi~kDsG------ni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 463 ASIYKDSG------NIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHhhccC------CcHHHHHHHHHHHccCCCCc
Confidence 88888888 88999999999999888544
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=3e-14 Score=172.91 Aligned_cols=528 Identities=10% Similarity=-0.034 Sum_probs=260.7
Q ss_pred cccchHHHHHHHHHhhhHhHHHHHHcCCCCHHHHHHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005817 38 KSLAMADVVQYRLERMVDELDDLERRGLFTRHEISEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIG 117 (676)
Q Consensus 38 ~~~~ma~~v~~~~e~~~~e~~~~~~~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~ 117 (676)
-+.+|.+.+|.-+|| ..-...++=.. -.|..++..+...|.++..+..-+..-...+
T Consensus 20 ~~~~~~~~~~~Ll~q----~~~~~~~~~~d--------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g----------- 76 (1157)
T PRK11447 20 LAQAAPTAQQQLLEQ----VRLGEATHRED--------LVRQSLYRLELIDPNNPDVIAARFRLLLRQG----------- 76 (1157)
T ss_pred cccccCCHHHHHHHH----HHHHHhhCChH--------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCC-----------
Confidence 344666777775544 44444444222 2677777788888888777655444332211
Q ss_pred ccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHH----------------HHHHHHcc-CchHHHHH
Q 005817 118 RDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKY----------------MEFCRQRK-NGRMKKVL 180 (676)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y----------------~~~~~~~~-~~~~~~~~ 180 (676)
....|...++++++..|++...|... +..+...| .+.+..+|
T Consensus 77 ---------------------~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 77 ---------------------DSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred ---------------------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 23456666666666666666655322 22333333 35666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 005817 181 AQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRD 260 (676)
Q Consensus 181 ~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~ 260 (676)
++++..+|.++.+=..|........|+.+.|+..|+++++.+|.+..++..++++....++...+... +..........
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~-l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAV-LEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHH-HHHHhhCCCch
Confidence 66666666655433333222222345666677777777776676666666666655432221111111 11000000000
Q ss_pred ccchhHHhhhhh------ccc---cccCC-CCCCCCCCC----CCC--------cchhh--hhhhhhHHHhhhHHHHHHH
Q 005817 261 HRDADEKRWINE------NKG---LFMPL-DGEVENTDG----SQP--------ENMES--QKSVDLFREQGLRVLQTIY 316 (676)
Q Consensus 261 ~~~~~~~~~~~~------~~~---~~~~~-~~~~~~~~~----~~~--------~~~~~--~~~~~~~~~~~~~~a~~iy 316 (676)
......|... .+. .+..+ ......+.. ..+ ++... ......+..++++.|...|
T Consensus 215 --~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 215 --DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred --HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH
Confidence 0000000000 000 00000 000000000 000 00000 0011122346789999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh--hHHHH------------HHHhccccCCCC
Q 005817 317 SGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWL------------ARLKMTDSVSKD 382 (676)
Q Consensus 317 ~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~--~w~~l------------a~~~~~~~~~~~ 382 (676)
+++++..|++.+.+..+-.++... +..+.+...++++++..|++.. .|..+ +...+.
T Consensus 293 ~~aL~~~P~~~~a~~~Lg~~~~~~---g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~------ 363 (1157)
T PRK11447 293 QQAVRANPKDSEALGALGQAYSQQ---GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK------ 363 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH------
Confidence 999999999888877665555432 3578899999999999998753 23211 222222
Q ss_pred CCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc
Q 005817 383 GTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461 (676)
Q Consensus 383 ~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~ 461 (676)
.+++++|+..|+++++..|... .+......... .|+++.|...|++++..+|.+
T Consensus 364 -------~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~------------------~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 364 -------ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA------------------RKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCC
Confidence 3567777777777777766543 22111111111 244555555555555555554
Q ss_pred HHHHHHHH------------------------------------------HHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817 462 EDIAHRYV------------------------------------------TLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (676)
Q Consensus 462 ~~lw~~~~------------------------------------------~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (676)
...+...+ ..+...|++++|+..+++++ +..|+++.+
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P~~~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHH
Confidence 44332222 22233455666666666666 556666655
Q ss_pred HHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh------HHHH------------
Q 005817 500 WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK------HYFD------------ 561 (676)
Q Consensus 500 W~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~------~~~~------------ 561 (676)
+...+.++...+ +.+++...|++++...|.... .+..+.-++.... ..++
T Consensus 498 ~~~LA~~~~~~G----------~~~~A~~~l~~al~~~P~~~~--~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 498 TYRLAQDLRQAG----------QRSQADALMRRLAQQKPNDPE--QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHHHHHHHHHcC----------CHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 555555555444 245555555555544332210 1110000000000 0000
Q ss_pred ---------HH------------HHHHHHhh--hhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 005817 562 ---------KL------------VEIALISV--AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618 (676)
Q Consensus 562 ---------~~------------~~~a~~~~--~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~ 618 (676)
.+ ++.|+..+ .|.. +......+.+....|++++|...|++++...|.+...+
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~-----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~ 640 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS-----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADAR 640 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC-----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 00 11111111 1221 22223456667777888888888888887777777777
Q ss_pred HHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCC
Q 005817 619 QNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSF 670 (676)
Q Consensus 619 ~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~ 670 (676)
...+.+-...+ +.+.|+++|+++++..|+++.++......-...|+
T Consensus 641 ~~la~~~~~~g------~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 641 LGLIEVDIAQG------DLAAARAQLAKLPATANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHHHCC------CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC
Confidence 66666655555 56666666666666555555555554444444443
No 16
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.79 E-value=5.8e-16 Score=155.45 Aligned_cols=444 Identities=15% Similarity=0.125 Sum_probs=281.6
Q ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHH
Q 005817 83 YRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWF 162 (676)
Q Consensus 83 ~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~ 162 (676)
.+|+-+|.++..|..-|+|-...+ .....+..|++...-||--...|.
T Consensus 33 erIkdNPtnI~S~fqLiq~~~tq~--------------------------------s~~~~re~yeq~~~pfp~~~~aw~ 80 (660)
T COG5107 33 ERIKDNPTNILSYFQLIQYLETQE--------------------------------SMDAEREMYEQLSSPFPIMEHAWR 80 (660)
T ss_pred HHhhcCchhHHHHHHHHHHHhhhh--------------------------------hHHHHHHHHHHhcCCCccccHHHH
Confidence 578889999999999999765432 245567899999999999999999
Q ss_pred HHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHH-HHHHHHHH-------HHHhCCCCHHHHHHHH
Q 005817 163 KYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVT-AARALMQN-------GLRVCPTSEELWVEYL 233 (676)
Q Consensus 163 ~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~-~Ar~~~~r-------al~~~p~~~~lW~~y~ 233 (676)
.|+.-+...+ +..+..+|.|||..-- +.+||..|+.+-...++.++ .+|..+-+ ..-+.|.+...|.+|.
T Consensus 81 ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~ 159 (660)
T COG5107 81 LYMSGELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYG 159 (660)
T ss_pred HHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHH
Confidence 9998776655 5778999999998654 38999999998754443222 23333333 3345578899999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (676)
.|....-. + .+ ++. +..++..|
T Consensus 160 ~fle~~~~--------~----------------~k----------------------------wEe------Qqrid~iR 181 (660)
T COG5107 160 LFLEYIEE--------L----------------GK----------------------------WEE------QQRIDKIR 181 (660)
T ss_pred HHHHhccc--------c----------------cc----------------------------HHH------HHHHHHHH
Confidence 98553200 0 01 111 13678899
Q ss_pred HHHHHHHhcCCCc-hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHH---hccccCCCCCCCcCcc
Q 005817 314 TIYSGAVEALPSS-FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL---KMTDSVSKDGTSEDIV 389 (676)
Q Consensus 314 ~iy~~Al~~~p~~-~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~---~~~~~~~~~~~~~~~~ 389 (676)
.+|.+|+...-++ ..+|.. |..|+...+...+++++-.. +|.. +.|+. ++.... .|..+..
T Consensus 182 ~~Y~ral~tP~~nleklW~d----y~~fE~e~N~~TarKfvge~------sp~y--m~ar~~yqe~~nlt--~Gl~v~~- 246 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKD----YENFELELNKITARKFVGET------SPIY--MSARQRYQEIQNLT--RGLSVKN- 246 (660)
T ss_pred HHHHHHHcCccccHHHHHHH----HHHHHHHHHHHHHHHHhccc------CHHH--HHHHHHHHHHHHHh--ccccccC-
Confidence 9999999986655 345544 46666432233444443221 1111 11111 111000 0000000
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~ 469 (676)
.-... .+.++-. . ...-|..+++++++....-..+ -...+.--+|+.++.-.|..+++|+.|.
T Consensus 247 ~~~~R----t~nK~~r-~-s~S~WlNwIkwE~en~l~L~~~-----------~~~qRi~y~~~q~~~y~~~~~evw~dys 309 (660)
T COG5107 247 PINLR----TANKAAR-T-SDSNWLNWIKWEMENGLKLGGR-----------PHEQRIHYIHNQILDYFYYAEEVWFDYS 309 (660)
T ss_pred chhhh----hhccccc-c-ccchhhhHhhHhhcCCcccCCC-----------cHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 00000 1111111 0 1125999999988743211100 1123666789999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC-----------
Q 005817 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS----------- 538 (676)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~----------- 538 (676)
.++...++-+.|++..++++ .-+|. +-..+...+.-.. +-+.++..|+++++.+.
T Consensus 310 ~Y~~~isd~q~al~tv~rg~-~~sps---L~~~lse~yel~n----------d~e~v~~~fdk~~q~L~r~ys~~~s~~~ 375 (660)
T COG5107 310 EYLIGISDKQKALKTVERGI-EMSPS---LTMFLSEYYELVN----------DEEAVYGCFDKCTQDLKRKYSMGESESA 375 (660)
T ss_pred HHHhhccHHHHHHHHHHhcc-cCCCc---hheeHHHHHhhcc----------cHHHHhhhHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999998888 55554 6666665554332 45667777777764310
Q ss_pred ------hhhh-----------HHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817 539 ------ALES-----------ESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (676)
Q Consensus 539 ------~~~~-----------~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~ 599 (676)
+... .-.|..++++..+.. +.++++|.++.+. +-.+ +..-+..+|+++. ..|+...
T Consensus 376 s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~--~~~~--h~vyi~~A~~E~~-~~~d~~t 450 (660)
T COG5107 376 SKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE--GIVG--HHVYIYCAFIEYY-ATGDRAT 450 (660)
T ss_pred ccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc--CCCC--cceeeeHHHHHHH-hcCCcch
Confidence 0000 113555555443322 4567777776642 1111 1123344566554 3688999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCC--chHHHHHHHHHhhcCCcccC
Q 005817 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN--TSLWRDYYSTETKVSFSLLC 674 (676)
Q Consensus 600 Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~--~~lW~~y~~fE~~~G~~~~~ 674 (676)
|-.||+-++.-.|+++.+-.+|..+-...+ +-++||++|+.++...... ..+|..|+++|.++|+...+
T Consensus 451 a~~ifelGl~~f~d~~~y~~kyl~fLi~in------de~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 451 AYNIFELGLLKFPDSTLYKEKYLLFLIRIN------DEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHhC------cHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 999999999988999888888888777776 7799999999999876532 59999999999999997543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=2.5e-14 Score=173.57 Aligned_cols=452 Identities=11% Similarity=0.021 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHH------------------
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYA------------------ 197 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~------------------ 197 (676)
...+...|++++..+|++..++..++.+....+ ...+...|++++...+.. ..+|...
T Consensus 163 ~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l 242 (1157)
T PRK11447 163 RPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYL 242 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 456788999999999999999988888887665 355666666665433211 1222111
Q ss_pred ---------------------------------HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 005817 198 ---------------------------------AAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLK 244 (676)
Q Consensus 198 ---------------------------------a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~ 244 (676)
+...+ ..|+++.|...|+++++.+|++..+|..........++...
T Consensus 243 ~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~-~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 243 QVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV-DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred HHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 11121 34677777777777777777777766666655443322222
Q ss_pred HHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh---hhhh-hhHHHhhhHHHHHHHHHHH
Q 005817 245 ARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES---QKSV-DLFREQGLRVLQTIYSGAV 320 (676)
Q Consensus 245 ~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~a~~iy~~Al 320 (676)
+... +..+.+ .+|.......|.. + +....+ .... ..+..++++.|...|++++
T Consensus 322 A~~~-l~~Al~---~~p~~~~~~~~~~--------l-----------l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 322 AVAQ-FEKALA---LDPHSSNRDKWES--------L-----------LKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHH-HHHHHH---hCCCccchhHHHH--------H-----------HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2111 110000 0000000000000 0 000000 0000 1112344555666666666
Q ss_pred hcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHH
Q 005817 321 EALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVY 400 (676)
Q Consensus 321 ~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~y 400 (676)
+..|++...+..+-.++..- +..+.+...++++++..|++..++..++..+.. +..++|...+
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~---g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~--------------~~~~~A~~~l 441 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMAR---KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ--------------QSPEKALAFI 441 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------------cCHHHHHHHH
Confidence 66555544444333333221 234556666666666666665555555554421 2234444444
Q ss_pred HHHhhccCchh------H-HHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005817 401 EEALKNVPSSM------I-FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL 473 (676)
Q Consensus 401 e~al~~~~~~~------l-w~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~ 473 (676)
+......+... + ...+...-. . ....++.+.|+..|++++..+|.++.++...+.++.
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~-~--------------~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAE-A--------------LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHH-H--------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33211110000 0 000000000 0 012477899999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH---------------------
Q 005817 474 QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC--------------------- 532 (676)
Q Consensus 474 ~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~--------------------- 532 (676)
+.|++++|..++++++ ...|.++..+..++.+....+. .+++...+++
T Consensus 507 ~~G~~~~A~~~l~~al-~~~P~~~~~~~a~al~l~~~~~----------~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 507 QAGQRSQADALMRRLA-QQKPNDPEQVYAYGLYLSGSDR----------DRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 9999999999999999 8899998888777655443332 2222222221
Q ss_pred ----------------HH---hhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHH
Q 005817 533 ----------------IL---TKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLV 591 (676)
Q Consensus 533 ----------------Al---~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~ 591 (676)
|+ ...|.+ ..++......+...+ +.+...|++++. ..|.+ .......+..+
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~~p~~--~~~~~~La~~~~~~g~~~~A~~~y~~al~-~~P~~-----~~a~~~la~~~ 647 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQQPPS--TRIDLTLADWAQQRGDYAAARAAYQRVLT-REPGN-----ADARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHH
Confidence 11 111211 223333333333322 344556666654 34543 23333566777
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc------hHHHHHHHHH
Q 005817 592 IQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT------SLWRDYYSTE 665 (676)
Q Consensus 592 ~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~------~lW~~y~~fE 665 (676)
...|+.++|++.|++++...|.+...+.....+....+ +.+.|.++|++++...|+.+ .++.....+.
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g------~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~ 721 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG------DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE 721 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC------CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH
Confidence 78999999999999999888888887777776666677 89999999999999876433 4666667888
Q ss_pred hhcCCcc
Q 005817 666 TKVSFSL 672 (676)
Q Consensus 666 ~~~G~~~ 672 (676)
...|+.+
T Consensus 722 ~~~G~~~ 728 (1157)
T PRK11447 722 AQTGQPQ 728 (1157)
T ss_pred HHcCCHH
Confidence 7777654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.4e-14 Score=163.03 Aligned_cols=423 Identities=10% Similarity=-0.021 Sum_probs=236.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....|...|++++...|+ ...|...+....+.| +..+...+++++...|+++..|...+.... ..|+++.|...|..
T Consensus 142 ~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~-~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 142 DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD-GLGKYADALLDLTA 219 (615)
T ss_pred CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 467899999999999995 667777777666666 578999999999999999999999999885 78899999999988
Q ss_pred HHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCC-CCCcch
Q 005817 218 GLRVCPTSEELWVEYL-RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG-SQPENM 295 (676)
Q Consensus 218 al~~~p~~~~lW~~y~-~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 295 (676)
++...+.....-...+ +...... ...-...+....... +............. ........+...+. +.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a--~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFA--ESKAKEILETKPENL---PSVTFVGNYLQSFR-PKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCC---CCHHHHHHHHHHcc-CCcchhhhhcccccccccccc
Confidence 8777654322111111 1100000 000011111111000 00000000000000 00000000000000 000000
Q ss_pred hhhhhhhhH---HHhhhHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817 296 ESQKSVDLF---REQGLRVLQTIYSGAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (676)
Q Consensus 296 ~~~~~~~~~---~~~~~~~a~~iy~~Al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~ 369 (676)
......... ..+.++.|...|+++++.. |.....+...-.++ ...+..+.+...+++++...|+....|..
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~---~~~g~~~eA~~~~~kal~l~P~~~~~~~~ 370 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK---CLKGKHLEALADLSKSIELDPRVTQSYIK 370 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 000000000 0134667777777777653 33322222221111 11235667777777777777777777777
Q ss_pred HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL 448 (676)
Q Consensus 370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~ 448 (676)
+|..+.. .+++++|...|+++++..|... .|......... .|+++.|+
T Consensus 371 la~~~~~-------------~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~g~~~~A~ 419 (615)
T TIGR00990 371 RASMNLE-------------LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI------------------KGEFAQAG 419 (615)
T ss_pred HHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHH
Confidence 7776654 3567777777777777666533 33322222211 35577777
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHH
Q 005817 449 TVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (676)
Q Consensus 449 ~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~ 528 (676)
..|++++..+|.+...|...+..+.+.|++++|...+++++ +.+|+++.+|..+..+....| +.+++.+
T Consensus 420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~~~~g----------~~~~A~~ 488 (615)
T TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK-KNFPEAPDVYNYYGELLLDQN----------KFDEAIE 488 (615)
T ss_pred HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcc----------CHHHHHH
Confidence 77777777777777777777777777777777777777777 677777777777776666554 3677777
Q ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817 529 LLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL 608 (676)
Q Consensus 529 ~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al 608 (676)
.|++|+...|.... .|...+. +....+.+....|++++|..+|++++
T Consensus 489 ~~~~Al~l~p~~~~--~~~~~~~-------------------------------l~~~a~~~~~~~~~~~eA~~~~~kAl 535 (615)
T TIGR00990 489 KFDTAIELEKETKP--MYMNVLP-------------------------------LINKALALFQWKQDFIEAENLCEKAL 535 (615)
T ss_pred HHHHHHhcCCcccc--ccccHHH-------------------------------HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777765443211 1110000 00000111112466777777777777
Q ss_pred cCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817 609 ALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (676)
Q Consensus 609 ~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~ 653 (676)
...|.+...+...+.+....| +++.|...|++|++..++
T Consensus 536 ~l~p~~~~a~~~la~~~~~~g------~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 536 IIDPECDIAVATMAQLLLQQG------DVDEALKLFERAAELART 574 (615)
T ss_pred hcCCCcHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHHhcc
Confidence 766666666666666666666 667777777777776554
No 19
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.77 E-value=5e-17 Score=181.79 Aligned_cols=237 Identities=18% Similarity=0.238 Sum_probs=190.9
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc-h-----hHHHHHHHHHHHHh
Q 005817 351 KILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS-S-----MIFDLYTKFLMDMI 424 (676)
Q Consensus 351 ~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~-~-----~lw~~y~~~~~~~~ 424 (676)
.-+++++...|++.-.|+.+..+.++ .+.+++||.+.++||..++- + .+|.+|++++..+
T Consensus 1445 eDferlvrssPNSSi~WI~YMaf~Le-------------lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y- 1510 (1710)
T KOG1070|consen 1445 EDFERLVRSSPNSSILWIRYMAFHLE-------------LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY- 1510 (1710)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhh-------------hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-
Confidence 34667788888888888888887776 56788899999999888742 1 2888888887764
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
|.-+.+.++|++|.+. +....++.....+|.+...+++|.++++..+ +++.....+|.+|+
T Consensus 1511 -----------------G~eesl~kVFeRAcqy-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~-KKF~q~~~vW~~y~ 1571 (1710)
T KOG1070|consen 1511 -----------------GTEESLKKVFERACQY-CDAYTVHLKLLGIYEKSEKNDEADELLRLML-KKFGQTRKVWIMYA 1571 (1710)
T ss_pred -----------------CcHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHhcchhhHHHHHH
Confidence 2246777888888876 5556788888888888888888888888888 77777888888888
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchH
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLP 584 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 584 (676)
++..+++ +.++++.++.+||+.+|..+- ..+.
T Consensus 1572 ~fLl~~n----------e~~aa~~lL~rAL~~lPk~eH--------------------------------------v~~I 1603 (1710)
T KOG1070|consen 1572 DFLLRQN----------EAEAARELLKRALKSLPKQEH--------------------------------------VEFI 1603 (1710)
T ss_pred HHHhccc----------HHHHHHHHHHHHHhhcchhhh--------------------------------------HHHH
Confidence 8888764 357788888888887774321 1223
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC---CCchHHHHH
Q 005817 585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD---QNTSLWRDY 661 (676)
Q Consensus 585 ~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~---~~~~lW~~y 661 (676)
..+++++++.|+-+++|.+|+-.+...|....+|.-||++|..++ +.+.+|.+||+++...- +...++..|
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~------~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG------DIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC------CHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 367888999999999999999999999999999999999999999 89999999999999753 334899999
Q ss_pred HHHHhhcCCcccC
Q 005817 662 YSTETKVSFSLLC 674 (676)
Q Consensus 662 ~~fE~~~G~~~~~ 674 (676)
.+||.+|||...+
T Consensus 1678 LeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHhcCchhhH
Confidence 9999999998653
No 20
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.76 E-value=1.3e-14 Score=152.66 Aligned_cols=385 Identities=16% Similarity=0.185 Sum_probs=248.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
..+..++.+|...|..+|-....|.+|++++.+.|. ..+.+||+|+++..|.+..+|+.|..+....+|+.+..|..|+
T Consensus 59 ~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 345888999999999999999999999999998874 6789999999999999999999999999888899999999999
Q ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 217 NGLRVCPT---SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 217 ral~~~p~---~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
+|+..+.. |..+|..|+.+|....
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qk----------------------------------------------------- 165 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQK----------------------------------------------------- 165 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccc-----------------------------------------------------
Confidence 99999985 5799999999984321
Q ss_pred chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccC------cHHHHHHHHHHHH----hcCCCC
Q 005817 294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQ------SDDMHDKILSDMQ----RDFLVD 363 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~------~~~~a~~il~~~~----~~~p~~ 363 (676)
+......||++.++..... ...+++-|.++-... ..+.+.++-.... ..+.++
T Consensus 166 --------------s~k~v~~iyeRileiP~~~---~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~ 228 (577)
T KOG1258|consen 166 --------------SWKRVANIYERILEIPLHQ---LNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQE 228 (577)
T ss_pred --------------cHHHHHHHHHHHHhhhhhH---hHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccC
Confidence 2233344555554432111 111112222111000 0011110000000 000000
Q ss_pred -hhhHHHHHHHhccccCCCCCCCc--C--------------cchhHHHHHHHHHHHHhhcc-----Cch----hHHHHHH
Q 005817 364 -PKYWDWLARLKMTDSVSKDGTSE--D--------------IVPSQMQKAIQVYEEALKNV-----PSS----MIFDLYT 417 (676)
Q Consensus 364 -~~~w~~la~~~~~~~~~~~~~~~--~--------------~~~~~~~~A~~~ye~al~~~-----~~~----~lw~~y~ 417 (676)
.+.|-... ...+...+.-. . .........+..||.+++.- |-. .-|..|+
T Consensus 229 ~~e~~~~~v----~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 229 PLEELEIGV----KDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL 304 (577)
T ss_pred hhHHHHHHH----hhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence 00000000 00000000000 0 00112345566777777642 111 2799999
Q ss_pred HHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 418 KFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 418 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
.|.+. .|+.+++.-.|++|+......+++|+.|+.++...|+.+-|..++.+++.-.+|..+
T Consensus 305 df~i~------------------~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 305 DFEIT------------------LGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred hhhhh------------------cccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 99987 367899999999999987888999999999999999999999999999955678889
Q ss_pred HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhH-HHHHHHHHHHHhhhHHHHHH--HHHHHHhhhhC
Q 005817 498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESE-SLWLMALKFFMNQKHYFDKL--VEIALISVAKD 574 (676)
Q Consensus 498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~-~lW~~~l~~~~~~~~~~~~~--~~~a~~~~~~~ 574 (676)
.+...++.+++..| +...++.+++.....+|+..-+ -.|. +.. .+...++.. .........
T Consensus 367 ~i~L~~a~f~e~~~----------n~~~A~~~lq~i~~e~pg~v~~~l~~~---~~e-~r~~~~~~~~~~~~l~s~~~-- 430 (577)
T KOG1258|consen 367 IIHLLEARFEESNG----------NFDDAKVILQRIESEYPGLVEVVLRKI---NWE-RRKGNLEDANYKNELYSSIY-- 430 (577)
T ss_pred HHHHHHHHHHHhhc----------cHHHHHHHHHHHHhhCCchhhhHHHHH---hHH-HHhcchhhhhHHHHHHHHhc--
Confidence 99999999998876 4778888888888877654322 1222 111 111111111 111111111
Q ss_pred CCCCCCcchHHHHHHH---HHH-hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccC
Q 005817 575 GGGESGFSLPSAIINL---VIQ-KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLAS 630 (676)
Q Consensus 575 ~~~~~~~~~~~~y~~~---~~~-~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~ 630 (676)
.|.++.......|+++ ... .++.+.|+.++..++...|++..+|..++.|+...++
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 1222223333334444 222 5788999999999999999999999999999987653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=3.1e-14 Score=161.97 Aligned_cols=285 Identities=9% Similarity=0.015 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+..+++..+...|.+...+...+-.....| ...+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus 58 ~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQA 136 (656)
T ss_pred cchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 456778888999999999888888886666666 467888999999999999999988888875 678899999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
+...|++..+|...++.....
T Consensus 137 l~l~P~~~~a~~~la~~l~~~----------------------------------------------------------- 157 (656)
T PRK15174 137 WLAFSGNSQIFALHLRTLVLM----------------------------------------------------------- 157 (656)
T ss_pred HHhCCCcHHHHHHHHHHHHHC-----------------------------------------------------------
Confidence 999998888777766553221
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC-hhhHHHHHHHhccc
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-PKYWDWLARLKMTD 377 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~-~~~w~~la~~~~~~ 377 (676)
++++.|..+|++++...|++...+..+.. +. ..+..+.+..+++.++..+|.+ ...+..++..+..
T Consensus 158 --------g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~---~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~- 224 (656)
T PRK15174 158 --------DKELQAISLARTQAQEVPPRGDMIATCLS-FL---NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA- 224 (656)
T ss_pred --------CChHHHHHHHHHHHHhCCCCHHHHHHHHH-HH---HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH-
Confidence 24466777888887777777665543321 11 1235667777888887777644 3333333444333
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHH----HHHHHHH
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS----HLLTVYE 452 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~a~~iye 452 (676)
.++++.|...|++++...|... .+..+...... .|..+ .|...|+
T Consensus 225 ------------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~------------------~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 225 ------------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ------------------SGRSREAKLQAAEHWR 274 (656)
T ss_pred ------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------cCCchhhHHHHHHHHH
Confidence 4677888888888887766543 33333322222 12233 4788888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817 453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC 532 (676)
Q Consensus 453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~ 532 (676)
+++..+|.++..+..++.++...|++++|...+++++ ...|+++.++..++......|. .+++.+.|++
T Consensus 275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G~----------~~eA~~~l~~ 343 (656)
T PRK15174 275 HALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVGQ----------YTAASDEFVQ 343 (656)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHH
Confidence 8888888888888888888888888888888888888 7788888888887777766653 6777777777
Q ss_pred HHhhcC
Q 005817 533 ILTKVS 538 (676)
Q Consensus 533 Al~~~~ 538 (676)
++...|
T Consensus 344 al~~~P 349 (656)
T PRK15174 344 LAREKG 349 (656)
T ss_pred HHHhCc
Confidence 766544
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=8.8e-15 Score=152.17 Aligned_cols=362 Identities=13% Similarity=0.062 Sum_probs=253.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
+...++..+|+.|+...|..++.|+..+.-+...| ...+...|..||+++|...-.--....+. ...|.+..|...|.
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl-ka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL-KAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH-HhhcccchhHHHHH
Confidence 34678899999999999999999999998887776 46789999999999998665555555555 35789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
+|++..|.-.-+|..+.-.-..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~---------------------------------------------------------- 230 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNA---------------------------------------------------------- 230 (966)
T ss_pred HHHhhCCceeeeehhcchHHhh----------------------------------------------------------
Confidence 9999999765566555432211
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
.|++..|..-|++|++..|.-.+.+..+-..|.. ...++.+..-|.+++..-|.+..++-.+|-.|.+
T Consensus 231 ---------~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke---~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye 298 (966)
T KOG4626|consen 231 ---------QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKE---ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE 298 (966)
T ss_pred ---------cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHH---HhcchHHHHHHHHHHhcCCcchhhccceEEEEec
Confidence 1345567788888888877655555544444432 2345677788888888888888877777777766
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~ 456 (676)
+|.++.|+..|++||...|.-. .+|-++-.... ..|.+.+|...|.+|+.
T Consensus 299 -------------qG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALk---------------d~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 299 -------------QGLLDLAIDTYKRALELQPNFP--DAYNNLANALK---------------DKGSVTEAVDCYNKALR 348 (966)
T ss_pred -------------cccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHH---------------hccchHHHHHHHHHHHH
Confidence 5778888888988888777522 34433332210 13678888888888888
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
.+|..++.-...+..+.+.|.+++|..+|.+++ ..+|+........+.++.++| +++++...|+.||+.
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa~i~kqqg----------nl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLASIYKQQG----------NLDDAIMCYKEALRI 417 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHHHHHHhcc----------cHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888 888888877877777777766 377888888888875
Q ss_pred cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC
Q 005817 537 VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG 614 (676)
Q Consensus 537 ~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~ 614 (676)
-|.- + .-...+...+...+ ..+..-+++|+. ++|.. .+-....+......|++..|.+-|+.|+.+.|..
T Consensus 418 ~P~f-A-da~~NmGnt~ke~g~v~~A~q~y~rAI~-~nPt~-----AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 418 KPTF-A-DALSNMGNTYKEMGDVSAAIQCYTRAIQ-INPTF-----AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred CchH-H-HHHHhcchHHHHhhhHHHHHHHHHHHHh-cCcHH-----HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 5432 1 11111111222111 122334555554 23322 1111223444566899999999999999998887
Q ss_pred HHHHH
Q 005817 615 LVLYQ 619 (676)
Q Consensus 615 ~~l~~ 619 (676)
+..+.
T Consensus 490 pdA~c 494 (966)
T KOG4626|consen 490 PDAYC 494 (966)
T ss_pred chhhh
Confidence 76443
No 23
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.72 E-value=1.1e-15 Score=171.15 Aligned_cols=233 Identities=18% Similarity=0.286 Sum_probs=195.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005817 177 KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-PTS----EELWVEYLRMELTYLNKLKARKVALG 251 (676)
Q Consensus 177 ~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-p~~----~~lW~~y~~~e~~~~~~~~~r~~~l~ 251 (676)
..=|+|.+..+|++.-+|+.|+.|.+ +.++++.||.+++|||... +.. ..+|.+|+++|..++.
T Consensus 1444 aeDferlvrssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---------- 1512 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---------- 1512 (1710)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc----------
Confidence 45689999999999999999999998 5679999999999999765 432 4699999999987631
Q ss_pred cccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH
Q 005817 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ 331 (676)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~ 331 (676)
-+....||++|.+.+. ....+.
T Consensus 1513 ---------------------------------------------------------eesl~kVFeRAcqycd-~~~V~~ 1534 (1710)
T KOG1070|consen 1513 ---------------------------------------------------------EESLKKVFERACQYCD-AYTVHL 1534 (1710)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHhcc-hHHHHH
Confidence 1345788999988763 346778
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817 332 RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411 (676)
Q Consensus 332 ~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~ 411 (676)
.++.+|..++ ....|.++++.+++.|.+....|..++...+. +++-+.|+.++++||+.+|...
T Consensus 1535 ~L~~iy~k~e---k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-------------~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1535 KLLGIYEKSE---KNDEADELLRLMLKKFGQTRKVWIMYADFLLR-------------QNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHHhh---cchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-------------ccHHHHHHHHHHHHHhhcchhh
Confidence 8888998876 45789999999999999889999999999876 3567889999999999999743
Q ss_pred ---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817 412 ---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 412 ---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~a 488 (676)
+-..+++++-+ .|+.++.|.+|+-.+...|.-.++|.-|++++.+.|+.+.+|.+|+++
T Consensus 1599 Hv~~IskfAqLEFk------------------~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFK------------------YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hHHHHHHHHHHHhh------------------cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55566665554 366899999999999999999999999999999999999999999999
Q ss_pred hhccCCC--hHHHHHHHHHHHHHhcc
Q 005817 489 CSGKLSD--SVQLWLLRISVEIRCVT 512 (676)
Q Consensus 489 l~~~~P~--~~~lW~~~i~l~~~~~~ 512 (676)
+...++. ...++.+|++++.+.|+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 9555553 56788899999998875
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=1.8e-13 Score=158.95 Aligned_cols=405 Identities=9% Similarity=-0.010 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|..+|+++....|.+...|...+......+ ...+..+|++++...|.++.+|...+.... ..|+.+.|...++++
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQL 109 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 456778999999888999999999999988887 578999999999999999999999998886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
+...|++.. |..++.+....
T Consensus 110 l~~~P~~~~-~~~la~~l~~~----------------------------------------------------------- 129 (765)
T PRK10049 110 VSGAPDKAN-LLALAYVYKRA----------------------------------------------------------- 129 (765)
T ss_pred HHhCCCCHH-HHHHHHHHHHC-----------------------------------------------------------
Confidence 999999888 77765543321
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHH
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARL 373 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~ 373 (676)
++.+.|...|+++++..|++.+++..+..++..- ...+.+...++++.. .|+... .....++.
T Consensus 130 --------g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~---~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~ 197 (765)
T PRK10049 130 --------GRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN---RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRL 197 (765)
T ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh
Confidence 2457789999999999999988887765554432 234556667766554 444211 11111222
Q ss_pred hccccCCCCCCCcCcchhHH---HHHHHHHHHHhhccCchh-HHHHHHHHHH---HHhcCccccccCCCCChhhhhhHHH
Q 005817 374 KMTDSVSKDGTSEDIVPSQM---QKAIQVYEEALKNVPSSM-IFDLYTKFLM---DMIAPKKEETRDSELPSHVEHYISH 446 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~---~~A~~~ye~al~~~~~~~-lw~~y~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~ 446 (676)
.+... ....+++ ++|++.|+..++..|... ....+..... ..+. ..+..+.
T Consensus 198 ~~~~~--------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll--------------~~g~~~e 255 (765)
T PRK10049 198 SFMPT--------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL--------------ARDRYKD 255 (765)
T ss_pred hcccc--------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH--------------HhhhHHH
Confidence 21100 0012334 789999999986543211 1111111111 0000 1366899
Q ss_pred HHHHHHHHHHcCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh----HHHHHHHHHHHHHhccccCCCCC
Q 005817 447 LLTVYEKAEAMGC---LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 447 a~~iye~al~~~p---~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
|+..|++++..++ .....| .+..+...|++++|+.+|++++ ...|.+ ...+..+.......+
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l-~~~p~~~~~~~~~~~~L~~a~~~~g-------- 324 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELF-YHPETIADLSDEELADLFYSLLESE-------- 324 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHh-hcCCCCCCCChHHHHHHHHHHHhcc--------
Confidence 9999999998754 334455 4788899999999999999998 666654 344555444444444
Q ss_pred hhchHHHHHHHHHHHhhcChh-------------hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchH
Q 005817 520 KADILSIFELLKCILTKVSAL-------------ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP 584 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~~~~~~-------------~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~ 584 (676)
+.+++...+.++....|.. ............+...+ +.+..+++.++. ..|.. ..+.
T Consensus 325 --~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-~~P~n-----~~l~ 396 (765)
T PRK10049 325 --NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-NAPGN-----QGLR 396 (765)
T ss_pred --cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHH
Confidence 4788888889888765421 11122222223333222 445566666654 34443 3444
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005817 585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST 664 (676)
Q Consensus 585 ~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~f 664 (676)
...+..+...|+.++|.+.+++++...|.+..++...+......+ +++.|.++++.+++..|+++.+-----..
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~------~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ------EWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777778999999999999999999999998888888777777 89999999999999999876544333333
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.71 E-value=4.7e-13 Score=152.46 Aligned_cols=412 Identities=10% Similarity=-0.042 Sum_probs=259.1
Q ss_pred HHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817 165 MEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 243 (676)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~ 243 (676)
.+...+.| +..+...|++++...|+ +.+|...+.... ..|+++.|...+++++...|++..+|..........++..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN-ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH-HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 33333444 57899999999999996 788888887775 6789999999999999999999998888777655432211
Q ss_pred HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC
Q 005817 244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL 323 (676)
Q Consensus 244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~ 323 (676)
.+...+ .... .. ..+. .. .....+...-...+...+..+++..
T Consensus 212 eA~~~~-~~~~----------------~~-----~~~~------------~~---~~~~~~~~~l~~~a~~~~~~~l~~~ 254 (615)
T TIGR00990 212 DALLDL-TASC----------------II-----DGFR------------NE---QSAQAVERLLKKFAESKAKEILETK 254 (615)
T ss_pred HHHHHH-HHHH----------------Hh-----CCCc------------cH---HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111100 0000 00 0000 00 0000000000122334444455555
Q ss_pred CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817 324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA 403 (676)
Q Consensus 324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a 403 (676)
|.+...+..+-.++..+.. ......+.......|.....+..++...... ...+.+++|...|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~----------~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 255 PENLPSVTFVGNYLQSFRP----KPRPAGLEDSNELDEETGNGQLQLGLKSPES----------KADESYEEAARAFEKA 320 (615)
T ss_pred CCCCCCHHHHHHHHHHccC----CcchhhhhcccccccccccchHHHHHHHHHh----------hhhhhHHHHHHHHHHH
Confidence 5443333222222222211 1111222333334444444444443332210 0135788999999999
Q ss_pred hhcc---Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH
Q 005817 404 LKNV---PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD 479 (676)
Q Consensus 404 l~~~---~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~ 479 (676)
+... |... .|.....+... .|+++.|+..|++++..+|.....|+..+..+...|+++
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~------------------~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCL------------------KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 9753 2211 22221122111 477899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--
Q 005817 480 EARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-- 557 (676)
Q Consensus 480 ~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~-- 557 (676)
+|...+++++ ...|+++.+|..++.+....| +.+++...|++++...|.. ...|......+...+
T Consensus 383 eA~~~~~~al-~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 383 KAEEDFDKAL-KLNSEDPDIYYHRAQLHFIKG----------EFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCH
Confidence 9999999999 889999999999999887766 4899999999999877653 223443222222222
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHhhccC
Q 005817 558 HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL-------YQNCIELENNLAS 630 (676)
Q Consensus 558 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l-------~~~~i~lE~~~~~ 630 (676)
+.+...++.++. ..|.. +.....++..+...|++++|...|++++...|..... +...+.+....+
T Consensus 450 ~eA~~~~~~al~-~~P~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~- 522 (615)
T TIGR00990 450 ASSMATFRRCKK-NFPEA-----PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ- 522 (615)
T ss_pred HHHHHHHHHHHH-hCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh-
Confidence 445556666664 33443 3344356777888999999999999999887654222 222222222335
Q ss_pred CCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817 631 VGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 631 ~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (676)
+++.|..+|++|+...|++...|...++.-...|+.+
T Consensus 523 -----~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 523 -----DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred -----hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 8899999999999999988888888888888877754
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=1e-13 Score=157.77 Aligned_cols=343 Identities=10% Similarity=-0.006 Sum_probs=256.3
Q ss_pred Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817 170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248 (676)
Q Consensus 170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~ 248 (676)
..| ...+..+++..+..+|.++..+...+.... ..|+++.|...|++++...|++...|...+......
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~--------- 123 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPL-ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS--------- 123 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHh-hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------
Confidence 335 578999999999999999999999998776 689999999999999999999998886665443221
Q ss_pred HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817 249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN 328 (676)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~ 328 (676)
++++.|...|+++++..|++..
T Consensus 124 ----------------------------------------------------------g~~~~Ai~~l~~Al~l~P~~~~ 145 (656)
T PRK15174 124 ----------------------------------------------------------KQYATVADLAEQAWLAFSGNSQ 145 (656)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhCCCcHH
Confidence 2567899999999999999988
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817 329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (676)
Q Consensus 329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~ 408 (676)
.+..+..++... +..+.+...+.+++...|+++..+..++.+ +. .+++++|...|+++++..|
T Consensus 146 a~~~la~~l~~~---g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l-~~-------------~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 146 IFALHLRTLVLM---DKELQAISLARTQAQEVPPRGDMIATCLSF-LN-------------KSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHHHHC---CChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HH-------------cCCHHHHHHHHHHHHhcCC
Confidence 888776665443 356788999999999999998887665443 22 4789999999999988765
Q ss_pred ch-h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH----HH
Q 005817 409 SS-M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE----AR 482 (676)
Q Consensus 409 ~~-~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~----A~ 482 (676)
.. . .+......... .|..+.|...|++++..+|.++..+..++..+...|++++ |.
T Consensus 209 ~~~~~~~~~l~~~l~~------------------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 209 LERQESAGLAVDTLCA------------------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CcchhHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 32 2 11111111111 3678999999999999999999999999999999999985 89
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHH
Q 005817 483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYF 560 (676)
Q Consensus 483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~ 560 (676)
..+++++ ...|++...|..++.+....|. .+++...|++++..-|.. ..++..+...+...+ +.+
T Consensus 271 ~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~----------~~eA~~~l~~al~l~P~~--~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 271 EHWRHAL-QFNSDNVRIVTLYADALIRTGQ----------NEKAIPLLQQSLATHPDL--PYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred HHHHHHH-hhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHH
Confidence 9999999 8999999999999998888764 789999999999876643 234443333333332 334
Q ss_pred HHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHH
Q 005817 561 DKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNA 640 (676)
Q Consensus 561 ~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~a 640 (676)
...++.++. ..|.. ..+....+..+...|+.++|...|++++...|.... . .++.+
T Consensus 338 ~~~l~~al~-~~P~~-----~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~------------~------~~~ea 393 (656)
T PRK15174 338 SDEFVQLAR-EKGVT-----SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP------------Q------SFEEG 393 (656)
T ss_pred HHHHHHHHH-hCccc-----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch------------h------hHHHH
Confidence 444554443 23332 223322345577899999999999999988776541 1 45566
Q ss_pred HHHHHHHHhhCC
Q 005817 641 RKLFESALATYD 652 (676)
Q Consensus 641 R~lye~al~~~~ 652 (676)
+.-|..++...+
T Consensus 394 ~~~~~~~~~~~~ 405 (656)
T PRK15174 394 LLALDGQISAVN 405 (656)
T ss_pred HHHHHHHHHhcC
Confidence 677777777655
No 27
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.3e-14 Score=154.29 Aligned_cols=423 Identities=13% Similarity=0.139 Sum_probs=271.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhC
Q 005817 146 IYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD--HNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 146 iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~--~~~~~~~Ar~~~~ral~~~ 222 (676)
.++.++ .+.++.....|+-++.+.| ..+++..-..+..+.|.+|.+|+.++.-+.. ..++...+-..|++||.-.
T Consensus 103 ~ee~ai--~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 103 EEELAI--NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY 180 (881)
T ss_pred HHHhcc--cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence 344444 4455555555566666666 4677777777888899999999999986653 2367888999999999643
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhh
Q 005817 223 PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVD 302 (676)
Q Consensus 223 p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (676)
.+..+|.+|+.+-...++. + .+
T Consensus 181 -~~v~iw~e~~~y~~~~~~~----------~------~~----------------------------------------- 202 (881)
T KOG0128|consen 181 -NSVPIWEEVVNYLVGFGNV----------A------KK----------------------------------------- 202 (881)
T ss_pred -ccchHHHHHHHHHHhcccc----------c------cc-----------------------------------------
Confidence 4589999999987664221 0 00
Q ss_pred hHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCc-HHHHHHHHHHHHh--cCCCChh--hHHHHHHH--hc
Q 005817 303 LFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQS-DDMHDKILSDMQR--DFLVDPK--YWDWLARL--KM 375 (676)
Q Consensus 303 ~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~-~~~a~~il~~~~~--~~p~~~~--~w~~la~~--~~ 375 (676)
..+++..|.+|.+|+........-...++.+|..|+..-. ....++++.--.. ..|-+.. .|.+.-.. +.
T Consensus 203 ---~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~ 279 (881)
T KOG0128|consen 203 ---SEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHV 279 (881)
T ss_pred ---cccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcch
Confidence 0145677889999998764443333444556666653211 1112223222211 2232211 12111110 10
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a 454 (676)
.. ....+......+..+-+..|++.++..+... .|..|++|+.. .|...+...+++++
T Consensus 280 ~~---~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~------------------~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 280 YD---VETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKK------------------SGDPVRIQLIEERA 338 (881)
T ss_pred HH---HHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh------------------cCCchHHHHHHHHH
Confidence 00 0000001112233444556666666655544 89999999986 25577888899999
Q ss_pred HHcCCCcHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817 455 EAMGCLTEDIAHRYVTLYL-QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (676)
Q Consensus 455 l~~~p~~~~lw~~~~~l~~-~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A 533 (676)
+...+.+++.|+.|..++. ..+-.+.+..++-+++ +.||....+|.++.-...+... +...+...+.++
T Consensus 339 ~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~-R~cp~tgdL~~rallAleR~re---------~~~vI~~~l~~~ 408 (881)
T KOG0128|consen 339 VAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV-RSCPWTGDLWKRALLALERNRE---------EITVIVQNLEKD 408 (881)
T ss_pred HHhccccHHHHhhhhhhcccccccccccccccchhh-cCCchHHHHHHHHHHHHHhcCc---------chhhHHHHHHHH
Confidence 9999999999999988765 3344566778899999 9999999999999855555543 467777888888
Q ss_pred HhhcChhhhHHHHHHHHHHHHhhh--------HHHHHHHHHHHHhhhhCCCC--CCCcchHHHHHHHHHH-hcCHHHHHH
Q 005817 534 LTKVSALESESLWLMALKFFMNQK--------HYFDKLVEIALISVAKDGGG--ESGFSLPSAIINLVIQ-KDGIQQARE 602 (676)
Q Consensus 534 l~~~~~~~~~~lW~~~l~~~~~~~--------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~y~~~~~~-~g~~~~Ar~ 602 (676)
+...- .+...++-++..+. ..++.+|+.|...+.+..+. .....+.+.++.+++. .++.+.||.
T Consensus 409 ls~~~-----~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~ 483 (881)
T KOG0128|consen 409 LSMTV-----ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKARE 483 (881)
T ss_pred HHHHH-----HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhH
Confidence 86421 12332322222211 34567777776655444322 0122333456666655 678999999
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC--CC-chHHHHHHHHHhhcCCccc
Q 005817 603 MYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYD--QN-TSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 603 iy~~al~~~p~~~~-l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~--~~-~~lW~~y~~fE~~~G~~~~ 673 (676)
|+...+.-+..+.. .|..++.||...+ +...+|.++.+|..... ++ ..+...|..||+.+|+.+.
T Consensus 484 iWn~imty~~~~iag~Wle~~~lE~~~g------~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 484 IWNFIMTYGGGSIAGKWLEAINLEREYG------DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES 552 (881)
T ss_pred hhhccccCCcchHHHHHHHHHhHHHHhC------CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence 99998877767777 9999999999988 88999999999988644 22 3899999999999999764
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=2.1e-12 Score=150.12 Aligned_cols=405 Identities=9% Similarity=-0.039 Sum_probs=274.3
Q ss_pred HhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817 152 MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 152 ~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~ 230 (676)
+..|-+...--.|+....-.| ...+..++.++....|.....+...+.... ..|++..|..+|++++...|.++.+|.
T Consensus 9 ~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 9 LKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred hccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 345556666666666666556 467889999999999999999999999886 688999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH
Q 005817 231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR 310 (676)
Q Consensus 231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (676)
..+.+.... ++++
T Consensus 88 ~la~~l~~~-------------------------------------------------------------------g~~~ 100 (765)
T PRK10049 88 GLILTLADA-------------------------------------------------------------------GQYD 100 (765)
T ss_pred HHHHHHHHC-------------------------------------------------------------------CCHH
Confidence 555433221 2557
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcch
Q 005817 311 VLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVP 390 (676)
Q Consensus 311 ~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~ 390 (676)
.|...++++++..|++.. +..+..++... +..+.+...++++++..|+++.++..++..... .
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~---g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-------------~ 163 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRA---GRHWDELRAMTQALPRAPQTQQYPTEYVQALRN-------------N 163 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------C
Confidence 889999999999999988 66654444332 457889999999999999999999988887654 3
Q ss_pred hHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhh---HHHHHHHHHHHHHcCCCcHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY---ISHLLTVYEKAEAMGCLTEDI 464 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~a~~iye~al~~~p~~~~l 464 (676)
+..+.|...++++.+ .|... .+........-.+.... ...+. .++|+..|+.++...|.+|+.
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~----------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~ 232 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR----------SEKERYAIADRALAQYDALEALWHDNPDA 232 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc----------ChhHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 567788888887775 44321 11111111110000000 00122 378899999998764433322
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHhhccC---CChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817 465 -------AHRYVTLYLQLGKLDEARKLAAKLCSGKL---SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (676)
Q Consensus 465 -------w~~~~~l~~~~~~~~~A~~l~~~al~~~~---P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al 534 (676)
.+..+-.+...|++++|+..|++++ +.. |.....|. +.+....+ +.+++...|++++
T Consensus 233 ~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll-~~~~~~P~~a~~~l--a~~yl~~g----------~~e~A~~~l~~~l 299 (765)
T PRK10049 233 TADYQRARIDRLGALLARDRYKDVISEYQRLK-AEGQIIPPWAQRWV--ASAYLKLH----------QPEKAQSILTELF 299 (765)
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCCHHHHHHH--HHHHHhcC----------CcHHHHHHHHHHh
Confidence 2221233457799999999999999 653 66677776 44454444 4789999999988
Q ss_pred hhcChh--hhHHHHHHHH-HHHHh-hhHHHHHHHHHHHHhhhhCCC-------CCCCcc---hHHHHHHHHHHhcCHHHH
Q 005817 535 TKVSAL--ESESLWLMAL-KFFMN-QKHYFDKLVEIALISVAKDGG-------GESGFS---LPSAIINLVIQKDGIQQA 600 (676)
Q Consensus 535 ~~~~~~--~~~~lW~~~l-~~~~~-~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---~~~~y~~~~~~~g~~~~A 600 (676)
..-|.. ........+. -+++. ..+.+...++.+... .|... ..+... ....++..+...|+.++|
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 754322 0111122111 11111 113333444444432 12100 000111 122345667788999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcc
Q 005817 601 REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 601 r~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~ 672 (676)
.+++++++...|.+..++...+.+....+ ..+.|.+++++|+..+|+++.++...+..-...|+.+
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g------~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARG------WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999988888 8999999999999999999889888887777666543
No 29
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.61 E-value=2.1e-11 Score=123.04 Aligned_cols=425 Identities=15% Similarity=0.213 Sum_probs=256.6
Q ss_pred HHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhC
Q 005817 75 VKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRF 154 (676)
Q Consensus 75 ~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~ 154 (676)
-+-|..+|....--|--...|..|+.-|+. | ...+.+..+|-||+..-
T Consensus 59 ~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-------~-------------------------~df~svE~lf~rCL~k~ 106 (660)
T COG5107 59 DAEREMYEQLSSPFPIMEHAWRLYMSGELA-------R-------------------------KDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHhcchhh-------h-------------------------hhHHHHHHHHHHHHhhh
Confidence 347889999998888889999999999864 2 13566778999999875
Q ss_pred CCCHHHHHHHHHHHHHcc-----Cc--hHHHHHHHHHH---hCCCCHHHHHHHHHHHH--------HhCCCHHHHHHHHH
Q 005817 155 KGDIELWFKYMEFCRQRK-----NG--RMKKVLAQVIR---FHPKVPGVWIYAAAWEF--------DHNLNVTAARALMQ 216 (676)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-----~~--~~~~~~~ral~---~~P~~~~lW~~~a~~e~--------~~~~~~~~Ar~~~~ 216 (676)
- +.+||..|+++.++.+ .. ..-++|+=.+. ..|.+..+|-.|+.|.- +.+..++..|..|+
T Consensus 107 l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 L-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 5 6999999999998753 11 23455555444 67889999999997641 23347999999999
Q ss_pred HHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcch
Q 005817 217 NGLRVCPTS-EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (676)
Q Consensus 217 ral~~~p~~-~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (676)
|||.+--++ +++|..|-.||.. ++++.+|+- .|... |
T Consensus 186 ral~tP~~nleklW~dy~~fE~e-~N~~TarKf-vge~s------p---------------------------------- 223 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELE-LNKITARKF-VGETS------P---------------------------------- 223 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHH-HHHHHHHHH-hcccC------H----------------------------------
Confidence 999875555 7899999999986 566777763 23210 0
Q ss_pred hhhhhhhhHHHhhhHHHHHHHHHHHh-----------------cCC-CchhHHHHHHHHHHHhc--ccC--cHHHHHHHH
Q 005817 296 ESQKSVDLFREQGLRVLQTIYSGAVE-----------------ALP-SSFNLRQRFFEIVEATN--LAQ--SDDMHDKIL 353 (676)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~Al~-----------------~~p-~~~~~~~~~~~~~~~fe--~~~--~~~~a~~il 353 (676)
-+-.|+..|+.... .+| ....-|..+++.-..-. +++ ......-++
T Consensus 224 ------------~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~ 291 (660)
T COG5107 224 ------------IYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIH 291 (660)
T ss_pred ------------HHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHH
Confidence 01111111111110 011 11122555555433211 111 122344566
Q ss_pred HHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccC
Q 005817 354 SDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRD 433 (676)
Q Consensus 354 ~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~ 433 (676)
++++.-+|-.+++|+.+..+.+. .++-++|..+-++|+..+|+.. ..|...++- .
T Consensus 292 ~q~~~y~~~~~evw~dys~Y~~~-------------isd~q~al~tv~rg~~~spsL~--~~lse~yel-----~----- 346 (660)
T COG5107 292 NQILDYFYYAEEVWFDYSEYLIG-------------ISDKQKALKTVERGIEMSPSLT--MFLSEYYEL-----V----- 346 (660)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhh-------------ccHHHHHHHHHHhcccCCCchh--eeHHHHHhh-----c-----
Confidence 77777777777777777666554 2445667777777777776622 112222211 0
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ-----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 434 ~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~-----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
++-+.....|+++++. +-..|-....+ .|+++....++-+-. ..-.-+|.-+++...
T Consensus 347 --------nd~e~v~~~fdk~~q~------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~ 408 (660)
T COG5107 347 --------NDEEAVYGCFDKCTQD------LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVL 408 (660)
T ss_pred --------ccHHHHhhhHHHHHHH------HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHH
Confidence 1123333334443321 11122111111 122221111111111 123456777777666
Q ss_pred HhccccCCCCChhchHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHH
Q 005817 509 RCVTRNSFSPSKADILSIFELLKCILTKVS-ALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSA 586 (676)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~-~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 586 (676)
+.. .++.++.+|.++=+. + ....+-+...+++++.... ..+-++|+..+..+ |+. +.....
T Consensus 409 r~~----------Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f-~d~-----~~y~~k 471 (660)
T COG5107 409 RKR----------GLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKF-PDS-----TLYKEK 471 (660)
T ss_pred HHh----------hHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhC-CCc-----hHHHHH
Confidence 542 378889999988542 2 1111234455666665443 34556777666543 333 356668
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 587 IINLVIQKDGIQQAREMYKRFLALPR--PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 587 y~~~~~~~g~~~~Ar~iy~~al~~~p--~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
|+.|+...++...||.+|++++.--. .-..+|.++|+.|...| +++.+-.+=++..+.+|
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G------~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG------SLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc------chHHHHhHHHHHHHHcC
Confidence 99999999999999999998874322 22469999999999999 88888888888888887
No 30
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.58 E-value=9.4e-12 Score=131.27 Aligned_cols=410 Identities=13% Similarity=0.111 Sum_probs=255.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---------Hcc-----CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHH
Q 005817 146 IYRLAVMRFKGDIELWFKYMEFCR---------QRK-----NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAA 211 (676)
Q Consensus 146 iyeral~~~p~~~~lW~~y~~~~~---------~~~-----~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~A 211 (676)
-...++.++|++.+.|-.....-. ..+ ...++.+|+..|...|.+...|..||.++. ..|++.++
T Consensus 20 ~~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s 98 (577)
T KOG1258|consen 20 TDNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENS 98 (577)
T ss_pred ccchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHH
Confidence 344666777777777754332211 111 246799999999999999999999999997 68899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCC
Q 005817 212 RALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQ 291 (676)
Q Consensus 212 r~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (676)
-.+|+||++..|.|..+|..|.+|.....
T Consensus 99 ~~Vfergv~aip~SvdlW~~Y~~f~~n~~--------------------------------------------------- 127 (577)
T KOG1258|consen 99 VKVFERGVQAIPLSVDLWLSYLAFLKNNN--------------------------------------------------- 127 (577)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhccC---------------------------------------------------
Confidence 99999999999999999999999865310
Q ss_pred CcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHhcCCCChhhH
Q 005817 292 PENMESQKSVDLFREQGLRVLQTIYSGAVEALPSS---FNLRQRFFEIVEATNL-AQSDDMHDKILSDMQRDFLVDPKYW 367 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~---~~~~~~~~~~~~~fe~-~~~~~~a~~il~~~~~~~p~~~~~w 367 (676)
++.+..+..|++|+..+..+ ..||..+++ |+. +.+......+|+++++.--.....+
T Consensus 128 ---------------~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie----~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 128 ---------------GDPETLRDLFERAKSYVGLDFLSDPLWDKYIE----FENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred ---------------CCHHHHHHHHHHHHHhcccchhccHHHHHHHH----HHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 12234688999999887654 356666554 442 2356778888888776422211111
Q ss_pred -HHHHHHhccccCCCCCCCcCcchhHHHH----H---------------HHHHHHHhhccCc--hh------HHHHHHHH
Q 005817 368 -DWLARLKMTDSVSKDGTSEDIVPSQMQK----A---------------IQVYEEALKNVPS--SM------IFDLYTKF 419 (676)
Q Consensus 368 -~~la~~~~~~~~~~~~~~~~~~~~~~~~----A---------------~~~ye~al~~~~~--~~------lw~~y~~~ 419 (676)
..+-+. +.+... + ....++. . .+..+.+++.+.. .. +-..++..
T Consensus 189 f~~f~~~-l~~~~~----~---~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 189 FDRFKQL-LNQNEE----K---ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HHHHHHH-HhcCCh----h---hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH
Confidence 111111 010000 0 0000110 0 1111111111110 00 11111111
Q ss_pred HHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005817 420 LMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSG 491 (676)
Q Consensus 420 ~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~ 491 (676)
.++.+. ........+..++..+.- .|.+ -..|..|+.+....|+.+.+..++++++ -
T Consensus 261 ~~~~~~--------------~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl-i 325 (577)
T KOG1258|consen 261 HEKVYQ--------------KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL-I 325 (577)
T ss_pred HHHHHH--------------hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH-h
Confidence 111100 001123455566666653 3333 3579999999999999999999999999 8
Q ss_pred cCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 005817 492 KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALI 569 (676)
Q Consensus 492 ~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~ 569 (676)
.|....++|.+|+......| +.+-+..++..|.+..-++. ..+-.+++.+-+..+ ..+..+++....
T Consensus 326 ~cA~Y~efWiky~~~m~~~~----------~~~~~~~~~~~~~~i~~k~~-~~i~L~~a~f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 326 PCALYDEFWIKYARWMESSG----------DVSLANNVLARACKIHVKKT-PIIHLLEARFEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHhhhHHHHHHHHHHHHHcC----------chhHHHHHHHhhhhhcCCCC-cHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 89999999999999888765 35666666777766432221 222233333222222 345667776665
Q ss_pred hhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH---HHHHHHHcCC---CCCHHHHHHHHHHHhhccCCCCccchHHHHHH
Q 005817 570 SVAKDGGGESGFSLPSAIINLVIQKDGIQQAR---EMYKRFLALP---RPGLVLYQNCIELENNLASVGDKDSLVNARKL 643 (676)
Q Consensus 570 ~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar---~iy~~al~~~---p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~l 643 (676)
.+ |.. -.+...++.|+.++|+.+.+. .+|....... ..-..++.+++.+-.... .+.+.|+.+
T Consensus 395 e~-pg~-----v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~-----~d~~~a~~~ 463 (577)
T KOG1258|consen 395 EY-PGL-----VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR-----EDADLARII 463 (577)
T ss_pred hC-Cch-----hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh-----cCHHHHHHH
Confidence 55 433 233345899999999999988 4444433211 112347777777765543 178999999
Q ss_pred HHHHHhhCCCCchHHHHHHHHHhhcCCc
Q 005817 644 FESALATYDQNTSLWRDYYSTETKVSFS 671 (676)
Q Consensus 644 ye~al~~~~~~~~lW~~y~~fE~~~G~~ 671 (676)
+..|+...|.+..+|++++.|+...+..
T Consensus 464 l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 464 LLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999988743
No 31
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5.8e-10 Score=114.74 Aligned_cols=477 Identities=15% Similarity=0.186 Sum_probs=256.8
Q ss_pred chHHHHHHHH-HhhhHhHHHHHHc-----CCCCHHHHH-HHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 005817 41 AMADVVQYRL-ERMVDELDDLERR-----GLFTRHEIS-EIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRK 113 (676)
Q Consensus 41 ~ma~~v~~~~-e~~~~e~~~~~~~-----~~~~~~ei~-~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~ 113 (676)
..-|++.+.. |--+.+|...+++ .-|++..|. .|+. .|=.++.|-+..+.-|..||.|=.. +
T Consensus 50 ~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~---lyr~at~rf~~D~~lW~~yi~f~kk-------~- 118 (568)
T KOG2396|consen 50 SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVF---LYRRATNRFNGDVKLWLSYIAFCKK-------K- 118 (568)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH---HHHHHHHhcCCCHHHHHHHHHHHHH-------h-
Confidence 5556665544 6666677766553 234555553 2332 3445667777789999999999521 0
Q ss_pred hhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCH
Q 005817 114 KSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVP 191 (676)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~ 191 (676)
....++..||..+++.+|+++++|..-+.++-..+ .+.++.+|-|+|+.||++|
T Consensus 119 ------------------------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 119 ------------------------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred ------------------------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 12567789999999999999999999999987765 4789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhh
Q 005817 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWIN 271 (676)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 271 (676)
.+|..|.++|+.. +++++. -.+.+.....+.. .+.-+-+..+.+ ..-.. +.
T Consensus 175 ~Lw~eyfrmEL~~---~~Kl~~-rr~~~g~~~~~~~--~eie~ge~~~~~--------~~~s~----------~~----- 225 (568)
T KOG2396|consen 175 KLWKEYFRMELMY---AEKLRN-RREELGLDSSDKD--EEIERGELAWIN--------YANSV----------DI----- 225 (568)
T ss_pred HHHHHHHHHHHHH---HHHHHH-HHHHhccccchhH--HHHHHHHHHHHh--------hccch----------hh-----
Confidence 9999999998731 222211 1122222222221 111111111100 00000 00
Q ss_pred hccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCch----hHHHHHHHHHHHhcccC---
Q 005817 272 ENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF----NLRQRFFEIVEATNLAQ--- 344 (676)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~----~~~~~~~~~~~~fe~~~--- 344 (676)
+.+.... +. .+.......+ .+.-+.+++......|+++ ++...+++.+.+-...+
T Consensus 226 ------~~~~~k~-------~e-~~~~~~~d~~----kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~ 287 (568)
T KOG2396|consen 226 ------IKGAVKS-------VE-LSVAEKFDFL----KELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDN 287 (568)
T ss_pred ------hhcchhh-------cc-hHHHHHHHHH----HHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhh
Confidence 0000000 00 0000000000 1112333333333333333 33344444433322111
Q ss_pred ---------cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC-chhHHH
Q 005817 345 ---------SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSMIFD 414 (676)
Q Consensus 345 ---------~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~-~~~lw~ 414 (676)
..+....+++.++..-|+ ..+|.++....++... ......+..-..+|+.+..... +.....
T Consensus 288 ~~~~~~~~~k~s~~~~v~ee~v~~l~t-~sm~e~YI~~~lE~~~-------~~r~~~I~h~~~~~~~~~~~~~l~~~~~~ 359 (568)
T KOG2396|consen 288 QAKAVEVGSKESRCCAVYEEAVKTLPT-ESMWECYITFCLERFT-------FLRGKRILHTMCVFRKAHELKLLSECLYK 359 (568)
T ss_pred hhhchhcchhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH-------hhhhhHHHHHHHHHHHHHHhcccccchHH
Confidence 122334456665555443 3556555555443211 0012255666677777765432 223555
Q ss_pred HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcc
Q 005817 415 LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE-AMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGK 492 (676)
Q Consensus 415 ~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al-~~~p~~~~lw~~~~~l~~~~~-~~~~A~~l~~~al~~~ 492 (676)
.|+....-... ...++.+-.... ....++..+|..++..+.+.. +.+-.....-..+ +.
T Consensus 360 ~ys~~~l~~~t------------------~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~-r~ 420 (568)
T KOG2396|consen 360 QYSVLLLCLNT------------------LNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHL-RK 420 (568)
T ss_pred HHHHHHHHHhc------------------cchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HH
Confidence 56555443211 122222222222 223567889999999988543 3333222222334 33
Q ss_pred CCC--hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHH
Q 005817 493 LSD--SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIAL 568 (676)
Q Consensus 493 ~P~--~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~ 568 (676)
.|. ....|...+ .++ + --..+..++-.|+.++-..+...|=..|++++-..+ ..+++++....
T Consensus 421 ~~~s~~~~~w~s~~-----~~d----s----l~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 421 QVCSELLISWASAS-----EGD----S----LQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HhcchhHHHHHHHh-----hcc----c----hhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333 345666655 111 0 012334445555555433334444445555543332 45666666543
Q ss_pred HhhhhCCCCCCCcchHHHHHHHHHH--hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHH
Q 005817 569 ISVAKDGGGESGFSLPSAIINLVIQ--KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFES 646 (676)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~y~~~~~~--~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~ 646 (676)
. ++|- ..+++...++++.. .-|+..+|..|+.|+.....++.+|+.|..+|..+| ..+.+-.+|.+
T Consensus 488 ~-lpp~-----sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g------~~en~~~~~~r 555 (568)
T KOG2396|consen 488 E-LPPF-----SLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLG------RPENCGQIYWR 555 (568)
T ss_pred h-CCCc-----cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCC------CcccccHHHHH
Confidence 2 3222 23555566777654 346999999999999888899999999999999999 66888999999
Q ss_pred HHhhC
Q 005817 647 ALATY 651 (676)
Q Consensus 647 al~~~ 651 (676)
|....
T Consensus 556 a~ktl 560 (568)
T KOG2396|consen 556 AMKTL 560 (568)
T ss_pred HHHhh
Confidence 98864
No 32
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=5.2e-10 Score=123.20 Aligned_cols=268 Identities=12% Similarity=0.062 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~---~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~ 215 (676)
....+..+|..|....-.+...|.--.-|+...+. +.+-..|...++.+|.+.-.-+--|.+.+ ..+|+..|..+|
T Consensus 109 ~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-nkkdY~~al~yy 187 (1018)
T KOG2002|consen 109 LFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAY-NKKDYRGALKYY 187 (1018)
T ss_pred HHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHh-ccccHHHHHHHH
Confidence 56778899999998888888888877778776653 47889999999999998888888888887 567999999999
Q ss_pred HHHHHhCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817 216 QNGLRVCPTSE-----ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (676)
Q Consensus 216 ~ral~~~p~~~-----~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (676)
+++|+.+|... -+|..+.++-
T Consensus 188 k~al~inp~~~aD~rIgig~Cf~kl~------------------------------------------------------ 213 (1018)
T KOG2002|consen 188 KKALRINPACKADVRIGIGHCFWKLG------------------------------------------------------ 213 (1018)
T ss_pred HHHHhcCcccCCCccchhhhHHHhcc------------------------------------------------------
Confidence 99999999641 2344444332
Q ss_pred CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHH
Q 005817 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~l 370 (676)
..+.|+..|.+|++..|+++.....+..+-..|..+.....+...+.++-..+|.+|.+...+
T Consensus 214 -----------------~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 214 -----------------MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred -----------------chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 234556666666666666554444333222223222234455555556666666666666666
Q ss_pred HHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817 371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449 (676)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~ 449 (676)
|..++. .++++.+..+++-+++...... +-..|-..-... +.+|++++|..
T Consensus 277 An~fyf-------------K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~---------------Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 277 ANHFYF-------------KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY---------------HAQGDFEKAFK 328 (1018)
T ss_pred HHHHhh-------------cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---------------HhhccHHHHHH
Confidence 666543 3556666666666655432111 111111111111 12344555555
Q ss_pred HHHHHHHcCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 450 VYEKAEAMGCLT-EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 450 iye~al~~~p~~-~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
.|-.++..++.+ .--.+..+++++..|+++.+...+++.+ +..|++.+.......++
T Consensus 329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~-k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL-KQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH-HhCcchHHHHHHHHhHH
Confidence 555555554444 2223344555555555555555555555 44555544444444433
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.50 E-value=5.2e-11 Score=128.16 Aligned_cols=259 Identities=9% Similarity=-0.024 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCCHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV----PGVWIYAAAWEFDHNLNVTAARAL 214 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~----~~lW~~~a~~e~~~~~~~~~Ar~~ 214 (676)
...|...|++++...|++...|...+.++...| ...+..++++++...+.. ...|...+.... ..|+++.|..+
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~ 129 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEEL 129 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHH
Confidence 466899999999999999999999999888777 578899999988753332 246777777765 67899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817 215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (676)
Q Consensus 215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (676)
|++++...|.+...+..++.+....
T Consensus 130 ~~~~l~~~~~~~~~~~~la~~~~~~------------------------------------------------------- 154 (389)
T PRK11788 130 FLQLVDEGDFAEGALQQLLEIYQQE------------------------------------------------------- 154 (389)
T ss_pred HHHHHcCCcchHHHHHHHHHHHHHh-------------------------------------------------------
Confidence 9999998887766666555543221
Q ss_pred hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-----LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~-----~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~ 369 (676)
++++.|...|+++++..|.+.. ++..+...+ ...+..+.+...++++++..|++...+..
T Consensus 155 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 219 (389)
T PRK11788 155 ------------KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA---LARGDLDAARALLKKALAADPQCVRASIL 219 (389)
T ss_pred ------------chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhHCcCCHHHHHH
Confidence 2556778888888877665422 222221111 12245778999999999999999999999
Q ss_pred HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHH
Q 005817 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHL 447 (676)
Q Consensus 370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a 447 (676)
++..+.. .+++++|...|++++...|... .+...+..... .|..+.|
T Consensus 220 la~~~~~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~------------------~g~~~~A 268 (389)
T PRK11788 220 LGDLALA-------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA------------------LGDEAEG 268 (389)
T ss_pred HHHHHHH-------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH------------------cCCHHHH
Confidence 9988865 4789999999999998766432 23222222221 3678999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817 448 LTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL 502 (676)
Q Consensus 448 ~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (676)
...+++++..+|... .+...+.++.+.|++++|..++++++ +..|++..+...
T Consensus 269 ~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l-~~~P~~~~~~~l 321 (389)
T PRK11788 269 LEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQL-RRHPSLRGFHRL 321 (389)
T ss_pred HHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHH-HhCcCHHHHHHH
Confidence 999999999988764 45889999999999999999999999 889998765533
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.2e-13 Score=141.39 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~ 235 (676)
...+.++......| ++.+..++.+.+... |+++.+|..++.... ..++.+.|+..+++.+...|.++.....++.+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW-SLGDYDEAIEAYEKLLASDKANPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 44456777776666 578888887766554 788899999888875 67789999999999998888776666665555
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHH
Q 005817 236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI 315 (676)
Q Consensus 236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 315 (676)
... ++++.|..+
T Consensus 88 -~~~-------------------------------------------------------------------~~~~~A~~~ 99 (280)
T PF13429_consen 88 -LQD-------------------------------------------------------------------GDPEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccc-------------------------------------------------------------------ccccccccc
Confidence 211 133445555
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhc--CCCChhhHHHHHHHhccccCCCCCCCcCcchhHH
Q 005817 316 YSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD--FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393 (676)
Q Consensus 316 y~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~--~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
++.+.+..++ ..++..++.++... +..+.+..+++++... .|+++.+|..+|..+.. .|+.
T Consensus 100 ~~~~~~~~~~-~~~l~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-------------~G~~ 162 (280)
T PF13429_consen 100 AEKAYERDGD-PRYLLSALQLYYRL---GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-------------LGDP 162 (280)
T ss_dssp -------------------H-HHHT---T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-------------CCHH
T ss_pred cccccccccc-cchhhHHHHHHHHH---hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------------cCCH
Confidence 5555554433 34444444444332 2456777777776543 36778888888888865 5788
Q ss_pred HHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 005817 394 QKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLY 472 (676)
Q Consensus 394 ~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~ 472 (676)
++|...|++|++..|.+. ++..++.+... .|+.++++.+++......|.++.+|..++..+
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLID------------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 999999999999888754 55555444332 35567777777777777678888999999999
Q ss_pred HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
...|++++|+..+++++ +..|+++.+...+++.....|. .+++.+++.+++.
T Consensus 225 ~~lg~~~~Al~~~~~~~-~~~p~d~~~~~~~a~~l~~~g~----------~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKAL-KLNPDDPLWLLAYADALEQAGR----------KDEALRLRRQALR 276 (280)
T ss_dssp HHHT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHT---------------------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccc----------ccccccccccccc
Confidence 99999999999999999 7889999999999988887764 5777777777664
No 35
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=7e-10 Score=122.25 Aligned_cols=407 Identities=14% Similarity=0.081 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHhCCCHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-P----GVWIYAAAWEFDHNLNVTAARA 213 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~-~----~lW~~~a~~e~~~~~~~~~Ar~ 213 (676)
...|...|...++..|+++-..+-=+.+.-..+ +..+...|.++|..+|.. + .+|.+++ ..|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~-----kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW-----KLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH-----hccchhhHHH
Confidence 567888999999999999887766666655544 578899999999999973 2 3454433 3568899999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 214 ~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
.|+|+++++|++......+.-+.+.+.+.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~--------------------------------------------------- 249 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDS--------------------------------------------------- 249 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccch---------------------------------------------------
Confidence 99999999999888777777665554111
Q ss_pred chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC---hhhHHHH
Q 005817 294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKYWDWL 370 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~---~~~w~~l 370 (676)
.++..+...+.+|....|.++.+...+...| -..+.+..+.++...++...-.. .+..+.+
T Consensus 250 -------------~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~f---yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~ 313 (1018)
T KOG2002|consen 250 -------------DSYKKGVQLLQRAYKENNENPVALNHLANHF---YFKKDYERVWHLAEHAIKNTENKSIKAESFYQL 313 (1018)
T ss_pred -------------HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH---hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1345556666666666666655544433322 11234555666555555443222 2335566
Q ss_pred HHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 371 ARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 371 a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
|+.+-. +|++++|-..|-++++..+.+.+...| .+-+-.+ ..|.++.+..-
T Consensus 314 gRs~Ha-------------~Gd~ekA~~yY~~s~k~~~d~~~l~~~-GlgQm~i---------------~~~dle~s~~~ 364 (1018)
T KOG2002|consen 314 GRSYHA-------------QGDFEKAFKYYMESLKADNDNFVLPLV-GLGQMYI---------------KRGDLEESKFC 364 (1018)
T ss_pred HHHHHh-------------hccHHHHHHHHHHHHccCCCCcccccc-chhHHHH---------------HhchHHHHHHH
Confidence 666644 577888888888888877664222111 1111111 24667888888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHH
Q 005817 451 YEKAEAMGCLTEDIAHRYVTLYLQLG----KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSI 526 (676)
Q Consensus 451 ye~al~~~p~~~~lw~~~~~l~~~~~----~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~ 526 (676)
|++.+...|.+.+.---.+.++...+ ..+.|..++.+++ ...|.+.+.|...+++++... +-..
T Consensus 365 fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~-~~~~~d~~a~l~laql~e~~d-----------~~~s 432 (1018)
T KOG2002|consen 365 FEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL-EQTPVDSEAWLELAQLLEQTD-----------PWAS 432 (1018)
T ss_pred HHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHhcC-----------hHHH
Confidence 88888888887765555555555443 4567888888888 778888888888888887643 3333
Q ss_pred HHHHHHHHh-------hcChhh--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHH--HHHHHHhc
Q 005817 527 FELLKCILT-------KVSALE--SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAI--INLVIQKD 595 (676)
Q Consensus 527 ~~~f~~Al~-------~~~~~~--~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y--~~~~~~~g 595 (676)
...|..|+. .+|+.. .+.-..+.++.+..+.+.+.++..++....+++.+. ...+-..| +..+...+
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~--~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK--STNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc--cchhHHHHHHHHHHHhhh
Confidence 556666663 244331 111122223334444444444444332222233220 12222233 44455677
Q ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817 596 GIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK 667 (676)
Q Consensus 596 ~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~ 667 (676)
+.+.|-++|...+..+|.-..-+....-|..... +...+-.++..+++....++.+|--+..+..+
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~------~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN------NLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc------CcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 8888888888888877655555554444444433 67788888888888877788888877765544
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=2.5e-12 Score=131.69 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRF--KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 140 ~~~~~~iyeral~~~--p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
...|..++++++... |++..+|..++.++...+ .+.+..+|++++...|.++.....++.+ . ..++++.|..++.
T Consensus 24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~-~~~~~~~A~~~~~ 101 (280)
T PF13429_consen 24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L-QDGDPEEALKLAE 101 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc
Confidence 567888997777665 899999999999988776 6789999999999999999998888888 4 5779999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
++.+..++ +..|..++.+....
T Consensus 102 ~~~~~~~~-~~~l~~~l~~~~~~--------------------------------------------------------- 123 (280)
T PF13429_consen 102 KAYERDGD-PRYLLSALQLYYRL--------------------------------------------------------- 123 (280)
T ss_dssp -----------------H-HHHT---------------------------------------------------------
T ss_pred cccccccc-cchhhHHHHHHHHH---------------------------------------------------------
Confidence 99987654 67777766553321
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEA--LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~--~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~ 374 (676)
++.+.+..+++.+... .|.+..+|..+-.++.+- +..+.+...++++++..|+++.++..++...
T Consensus 124 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~---G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 124 ----------GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL---GDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp ----------T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred ----------hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 1344556666665543 356667777665555443 4578999999999999999999998888887
Q ss_pred ccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
+. .++.++++.+++...+..|++. +|..+...... .|..++|...|++
T Consensus 191 i~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~------------------lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 191 ID-------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ------------------LGRYEEALEYLEK 239 (280)
T ss_dssp CT-------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH------------------HT-HHHHHHHHHH
T ss_pred HH-------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc------------------ccccccccccccc
Confidence 65 4677888888887777765543 77777665554 3678999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
++..+|.++.+...|++.+...|+.++|..++.+++
T Consensus 240 ~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 240 ALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999987
No 37
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.39 E-value=2.8e-08 Score=117.39 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 442 HYISHLLTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
|.++.|..+|++....+ ..+...|...++.+.+.|++++|..+++.+....++.+...|...|..+.+.+
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 34455555555544432 11233444445555555555555555555543333444445555554444443
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.39 E-value=4.7e-09 Score=122.98 Aligned_cols=374 Identities=7% Similarity=-0.084 Sum_probs=214.5
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHH-H
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS---EELWVEYLRMELTYLNKLKARK-V 248 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~---~~lW~~y~~~e~~~~~~~~~r~-~ 248 (676)
..++........+..|.+++.-..+.-..+ .+|+...|+.+|++++...++. ..+-...+.+..........++ .
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLM-QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 346667777777777888887777777776 6889999999999999874432 2233344444333221111111 1
Q ss_pred HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH---HHHHHHHHHHhcCCC
Q 005817 249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR---VLQTIYSGAVEALPS 325 (676)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~iy~~Al~~~p~ 325 (676)
.|+.- ++ ......|.+... .+...+.+++...|.
T Consensus 437 ~l~~~--------------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~ 473 (987)
T PRK09782 437 ILSKP--------------------------LP-----------------LAEQRQWQSQLPGIADNCPAIVRLLGDMSP 473 (987)
T ss_pred Hhccc--------------------------cc-----------------cchhHHHHhhhhhhhhhHHHHHHhcccCCC
Confidence 11100 00 000011112222 233444444444454
Q ss_pred --chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817 326 --SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA 403 (676)
Q Consensus 326 --~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a 403 (676)
+...|..+-.++.. .....+...+.+.+...|++.. ...++..... .++++.|...|+++
T Consensus 474 ~~~~~a~~~LG~~l~~----~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~-------------~Gr~eeAi~~~rka 535 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD----TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQ-------------VEDYATALAAWQKI 535 (987)
T ss_pred CCCHHHHHHHHHHHHh----CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHH-------------CCCHHHHHHHHHHH
Confidence 55555544433322 2344566767777777776532 3333443222 35677777778777
Q ss_pred hhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 005817 404 LKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARK 483 (676)
Q Consensus 404 l~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~ 483 (676)
+..-|....|......... .|+.+.|...|++++..+|....++...+......|++++|..
T Consensus 536 ~~~~p~~~a~~~la~all~------------------~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 536 SLHDMSNEDLLAAANTAQA------------------AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred hccCCCcHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 6554443333333222222 3556777777777777777666555544444445577888888
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHH
Q 005817 484 LAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFD 561 (676)
Q Consensus 484 l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~ 561 (676)
.+++++ +..|+ ...|...+.+..+.| +.+++...|++++...|... ..+..+...+...+ +.+.
T Consensus 598 ~~~~AL-~l~P~-~~a~~~LA~~l~~lG----------~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 598 DLTRSL-NIAPS-ANAYVARATIYRQRH----------NVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HHHHHH-HhCCC-HHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHH
Confidence 888887 77775 677777776666655 36777777777777665432 23332222222222 3344
Q ss_pred HHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHH
Q 005817 562 KLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNAR 641 (676)
Q Consensus 562 ~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR 641 (676)
..+++++. ..|.. +......+..+...|++++|+..|++++...|.+..+...+..++.... ++.++.
T Consensus 664 ~~l~~AL~-l~P~~-----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~------~~~~a~ 731 (987)
T PRK09782 664 EMLERAHK-GLPDD-----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF------NFRRLH 731 (987)
T ss_pred HHHHHHHH-hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH------HHHHHH
Confidence 45555554 33433 2233234445667788888888888888888887777777777776655 677888
Q ss_pred HHHHHHHhhCC
Q 005817 642 KLFESALATYD 652 (676)
Q Consensus 642 ~lye~al~~~~ 652 (676)
+-|.++..+.+
T Consensus 732 ~~~~r~~~~~~ 742 (987)
T PRK09782 732 EEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhhcCc
Confidence 88888877765
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.37 E-value=2.1e-09 Score=115.65 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=188.1
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE 252 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~ 252 (676)
.+.+...|.+++..+|+++.+|...+.... ..|+++.|..++++++...+... .....+...+..
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~La~------------- 115 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFR-RRGEVDRAIRIHQNLLSRPDLTR-EQRLLALQELGQ------------- 115 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HcCcHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHH-------------
Confidence 578999999999999999999999999886 68899999999999998533321 111111000000
Q ss_pred ccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHH
Q 005817 253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR 332 (676)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~ 332 (676)
..+..++++.|..+|+++++..|.+...+..
T Consensus 116 -------------------------------------------------~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 146 (389)
T PRK11788 116 -------------------------------------------------DYLKAGLLDRAEELFLQLVDEGDFAEGALQQ 146 (389)
T ss_pred -------------------------------------------------HHHHCCCHHHHHHHHHHHHcCCcchHHHHHH
Confidence 0001136788999999999887777666666
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc
Q 005817 333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV 407 (676)
Q Consensus 333 ~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~ 407 (676)
+..++..- +..+.+...++.++...|.+.. .+..++..+.. .++++.|...|+++++..
T Consensus 147 la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 147 LLEIYQQE---KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-------------RGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHHHHHh---chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHhHC
Confidence 65555432 3567888999999988877633 34456665544 477999999999999877
Q ss_pred Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcCCHHHHHHHH
Q 005817 408 PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRYVTLYLQLGKLDEARKLA 485 (676)
Q Consensus 408 ~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~~~l~~~~~~~~~A~~l~ 485 (676)
|+.. .+......... .|++++|...|++++..+|.. ...+...+..+...|++++|...+
T Consensus 211 p~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 211 PQCVRASILLGDLALA------------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred cCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7533 33333232222 367899999999999887765 466778888999999999999999
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817 486 AKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 486 ~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
++++ ...|++... ...+.+....+ +.+++..+|+++++..|..
T Consensus 273 ~~~~-~~~p~~~~~-~~la~~~~~~g----------~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 273 RRAL-EEYPGADLL-LALAQLLEEQE----------GPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHH-HhCCCchHH-HHHHHHHHHhC----------CHHHHHHHHHHHHHhCcCH
Confidence 9999 778877544 66777776665 4789999999999987654
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=1.1e-09 Score=128.18 Aligned_cols=279 Identities=10% Similarity=-0.035 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817 142 RILEIYRLAVMRFKG--DIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (676)
Q Consensus 142 ~~~~iyeral~~~p~--~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral 219 (676)
.+...+.+++...|+ +...|..+...+...+...+..+|.+++...|.+.. .+..+.... ..|+++.|...|++++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~-~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAY-QVEDYATALAAWQKIS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHH-HHHHHHHHH-HCCCHHHHHHHHHHHh
Confidence 345556666666677 888888888887764456788888888888887543 444444442 5778899999998887
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhh
Q 005817 220 RVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (676)
Q Consensus 220 ~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (676)
...|.. ..|...+.....
T Consensus 537 ~~~p~~-~a~~~la~all~------------------------------------------------------------- 554 (987)
T PRK09782 537 LHDMSN-EDLLAAANTAQA------------------------------------------------------------- 554 (987)
T ss_pred ccCCCc-HHHHHHHHHHHH-------------------------------------------------------------
Confidence 765553 334333322111
Q ss_pred hhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccC
Q 005817 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV 379 (676)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~ 379 (676)
.++.+.|...|+++++..|+...+...+ .......+..+.+...+++++...|+ +..|..+|..+..
T Consensus 555 ------~Gd~~eA~~~l~qAL~l~P~~~~l~~~L---a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~--- 621 (987)
T PRK09782 555 ------AGNGAARDRWLQQAEQRGLGDNALYWWL---HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ--- 621 (987)
T ss_pred ------CCCHHHHHHHHHHHHhcCCccHHHHHHH---HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH---
Confidence 1356778999999999888775554432 22221124678899999999999996 8889999988765
Q ss_pred CCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817 380 SKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458 (676)
Q Consensus 380 ~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~ 458 (676)
.++++.|...|++++...|... .+..+...... .|..+.|+..|++|+..+
T Consensus 622 ----------lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~------------------~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 622 ----------RHNVPAAVSDLRAALELEPNNSNYQAALGYALWD------------------SGDIAQSREMLERAHKGL 673 (987)
T ss_pred ----------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhC
Confidence 5789999999999999988765 44333333332 366899999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
|.++.++...+..+...|++++|+..+++++ ...|++..+-..+..+..... +++++.+.+.++...
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al-~l~P~~a~i~~~~g~~~~~~~----------~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVI-DDIDNQALITPLTPEQNQQRF----------NFRRLHEEVGRRWTF 740 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCchhhhhhhHHHHHHH----------HHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999 889999888888877776543 366666666666653
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.35 E-value=1e-08 Score=118.77 Aligned_cols=429 Identities=11% Similarity=0.050 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817 140 VARILEIYRLAVMR--FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARAL 214 (676)
Q Consensus 140 ~~~~~~iyeral~~--~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~ 214 (676)
...|..+|+.+... ++-+...+...+..|.+.+ ...+..++..+... .| ++..+-..+.... ..|+++.|+.+
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~-k~g~~~~A~~l 180 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHV-KCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHh-cCCCHHHHHHH
Confidence 56788899888764 3346778888888887776 45678888888774 45 5778888888775 78999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817 215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (676)
Q Consensus 215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (676)
|++... |+ ...|...+.-....+....+... +... .+.+ ..++.
T Consensus 181 f~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~l-f~~M----------------~~~g-----------~~p~~----- 224 (697)
T PLN03081 181 FDEMPE--RN-LASWGTIIGGLVDAGNYREAFAL-FREM----------------WEDG-----------SDAEP----- 224 (697)
T ss_pred HhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHH-HHHH----------------HHhC-----------CCCCh-----
Confidence 999854 43 46677777654443322222111 1100 0000 00000
Q ss_pred hhhhhhhhhH-HHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817 295 MESQKSVDLF-REQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR 372 (676)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~ 372 (676)
.-+...+..+ ..+....++.++..+++.. ..+...+..++++|.+.+ ..+.|..+++.+.. .+..+|..+..
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~---~~~vt~n~li~ 298 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG---DIEDARCVFDGMPE---KTTVAWNSMLA 298 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC---CHHHHHHHHHhCCC---CChhHHHHHHH
Confidence 0000001111 1134566777777776643 234456777888887754 46788888887743 35678988888
Q ss_pred HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhc--cCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN--VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~--~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
.+.. .++.++|..+|++..+. .|+...+...+..... .+.++.+..+
T Consensus 299 ~y~~-------------~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~------------------~g~~~~a~~i 347 (697)
T PLN03081 299 GYAL-------------HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR------------------LALLEHAKQA 347 (697)
T ss_pred HHHh-------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------------------ccchHHHHHH
Confidence 7765 47889999999988764 2333333332322222 3668889999
Q ss_pred HHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817 451 YEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL 529 (676)
Q Consensus 451 ye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~ 529 (676)
++..+..+ +.+..++...++++.+.|++++|..++++.. + | +...|...|..+.+.| +.+++.++
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~--~-d~~t~n~lI~~y~~~G----------~~~~A~~l 413 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-R--K-NLISWNALIAGYGNHG----------RGTKAVEM 413 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-C--C-CeeeHHHHHHHHHHcC----------CHHHHHHH
Confidence 99998875 4566788889999999999999999999876 4 3 4567998888887776 37889999
Q ss_pred HHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHh--hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHH
Q 005817 530 LKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALIS--VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMY 604 (676)
Q Consensus 530 f~~Al~~-~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy 604 (676)
|++.... +.++. . -+...+.-+...+ +....+|+.+... +.|+ ...+...++.+.+.|.+++|.+++
T Consensus 414 f~~M~~~g~~Pd~-~-T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~------~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 414 FERMIAEGVAPNH-V-TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR------AMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred HHHHHHhCCCCCH-H-HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC------ccchHhHHHHHHhcCCHHHHHHHH
Confidence 9988764 33332 1 2333333232222 4455566655431 2222 223345677788899999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817 605 KRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 605 ~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (676)
+++- ..++...|...+.--...+ +++.++.+++++++..|++...+...+..-.+.|..+.
T Consensus 486 ~~~~--~~p~~~~~~~Ll~a~~~~g------~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 486 RRAP--FKPTVNMWAALLTACRIHK------NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHCC--CCCCHHHHHHHHHHHHHcC------CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 8752 2345567877777666666 78899999999988888766677777777666676543
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=6.2e-09 Score=106.79 Aligned_cols=224 Identities=16% Similarity=0.124 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT 470 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~ 470 (676)
|+.-.|..-|+.+|+..|... ..||..-.-+.. +++.++-...|.+|...+|.++++|.+=++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~--~lyI~~a~~y~d---------------~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN--SLYIKRAAAYAD---------------ENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc--hHHHHHHHHHhh---------------hhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 444556667777777665433 114433322210 233566777888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHH
Q 005817 471 LYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMAL 550 (676)
Q Consensus 471 l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l 550 (676)
+..-.+++++|..=+++++ ...|.+.--+.+...+.-+++ .++++...|+.+..++|.- ...+..++
T Consensus 403 m~flL~q~e~A~aDF~Kai-~L~pe~~~~~iQl~~a~Yr~~----------k~~~~m~~Fee~kkkFP~~--~Evy~~fA 469 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAI-SLDPENAYAYIQLCCALYRQH----------KIAESMKTFEEAKKKFPNC--PEVYNLFA 469 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcChhhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhCCCC--chHHHHHH
Confidence 8888888888888888888 788888766666665555554 3788888888888888742 33445444
Q ss_pred HHHHhhh--HHHHHHHHHHHHhhhhCC-CC--CCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817 551 KFFMNQK--HYFDKLVEIALISVAKDG-GG--ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE 625 (676)
Q Consensus 551 ~~~~~~~--~~~~~~~~~a~~~~~~~~-~~--~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE 625 (676)
+.+...+ +.+.+-|++|+. +.|.. +. ...+.+-...+.+-+ .+++..|.++..+|+++.|.+..-+..+.++|
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~-LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIE-LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFE 547 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHh-hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 5443332 233444555554 33321 00 001122212222222 37888999999999998888888888888998
Q ss_pred hhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 626 NNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 626 ~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
.+++ ++++|-++||++...--
T Consensus 548 lQ~~------~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 548 LQRG------KIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHh------hHHHHHHHHHHHHHHHH
Confidence 8888 88999999998887643
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.32 E-value=7.8e-08 Score=113.62 Aligned_cols=426 Identities=13% Similarity=0.020 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV--PGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~--~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
...+...+.+++...+.....-..|..++ +.| ...+.++|+.+.....-. .-.+-...... ...|.+..|..+|.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~-~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 353 EENSLAAYNGGVSGKRKSPEYIDAYNRLL-RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC-KKQRAVKEAFRFAK 430 (1060)
T ss_pred hhhhHHHhccccCCCCCchHHHHHHHHHH-HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHCCCHHHHHHHHH
Confidence 34556677777766665444444444444 445 467888888887754322 22233333444 35678888888877
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
.... |+ ...|...+......+....+++. +....+ . .+ .+|. .-
T Consensus 431 ~M~~--pd-~~Tyn~LL~a~~k~g~~e~A~~l-f~~M~~----------------~------Gl-----~pD~-----~t 474 (1060)
T PLN03218 431 LIRN--PT-LSTFNMLMSVCASSQDIDGALRV-LRLVQE----------------A------GL-----KADC-----KL 474 (1060)
T ss_pred HcCC--CC-HHHHHHHHHHHHhCcCHHHHHHH-HHHHHH----------------c------CC-----CCCH-----HH
Confidence 6543 54 46666666544333222222211 111000 0 00 0000 00
Q ss_pred hhhhhhhH-HHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC-CCChhhHHHHHHH
Q 005817 297 SQKSVDLF-REQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF-LVDPKYWDWLARL 373 (676)
Q Consensus 297 ~~~~~~~~-~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~-p~~~~~w~~la~~ 373 (676)
+...+..+ ..++++.|..+|+...+.. ..+...|..++..|.+.+ ..+.+..+++.+.... .-+..+|..+...
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G---~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 11112222 2357788999999988753 224567777777776643 5678888998887643 2235667777777
Q ss_pred hccccCCCCCCCcCcchhHHHHHHHHHHHHhhc----cCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN----VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~----~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~ 449 (676)
+.. .+++++|.++|++.... .|+...|...+...-+ .|.+++|..
T Consensus 552 ~~k-------------~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k------------------~G~ldeA~e 600 (1060)
T PLN03218 552 CGQ-------------SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN------------------AGQVDRAKE 600 (1060)
T ss_pred HHH-------------CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH------------------CCCHHHHHH
Confidence 654 46789999999998753 3444456555544333 477999999
Q ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHH
Q 005817 450 VYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (676)
Q Consensus 450 iye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~ 528 (676)
+|+.....+ +.++..|...+..+.+.|++++|..++++.....+..+...|...+....+.+ +++++.+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G----------~~eeA~~ 670 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG----------DLDKAFE 670 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------CHHHHHH
Confidence 999999886 45778999999999999999999999999884444556778888888887765 4889999
Q ss_pred HHHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHh-hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHH
Q 005817 529 LLKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALIS-VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMY 604 (676)
Q Consensus 529 ~f~~Al~~-~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy 604 (676)
+|....+. ++++ ...|...+.-+.+.+ +.+..+|+.+... +.|+ ...+...+....+.|++++|.++|
T Consensus 671 l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd------vvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 671 ILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT------VSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99998865 3332 335666666665554 4566667665431 1222 122335677788899999999999
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC-CCchHHHHH
Q 005817 605 KRFLAL-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDY 661 (676)
Q Consensus 605 ~~al~~-~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~~lW~~y 661 (676)
+++... ..++...|...+..-...+ +++.|.++|+.+.+.-. .+..++...
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G------~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKD------DADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 998653 3455666666666555556 89999999999988633 333444433
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=4e-09 Score=113.94 Aligned_cols=287 Identities=13% Similarity=-0.017 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
...|.....++....|+..-..+.-++.....| .+.+...|.++++..|.+. .+-..++...+ ..|+.+.|+..+++
T Consensus 100 ~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~Al~~l~~ 178 (409)
T TIGR00540 100 YAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAARHGVDK 178 (409)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 566778888999888887766666677766666 5788999999999999875 57777888887 68899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
.++..|+++.++..+..+....+
T Consensus 179 l~~~~P~~~~~l~ll~~~~~~~~--------------------------------------------------------- 201 (409)
T TIGR00540 179 LLEMAPRHKEVLKLAEEAYIRSG--------------------------------------------------------- 201 (409)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHh---------------------------------------------------------
Confidence 99999999988877777665443
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHH-hcccCcHHHHHHHHHHHHhcCC----CChhhHHHHH
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEA-TNLAQSDDMHDKILSDMQRDFL----VDPKYWDWLA 371 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~-fe~~~~~~~a~~il~~~~~~~p----~~~~~w~~la 371 (676)
+.+.|...+....+.. ++..++...-...... +.. ...+.....+..+....| +++.++..++
T Consensus 202 ----------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~-~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a 270 (409)
T TIGR00540 202 ----------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE-AMADEGIDGLLNWWKNQPRHRRHNIALKIALA 270 (409)
T ss_pred ----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHH
Confidence 2333444444444431 1111110000000000 100 001111234445555555 6899999999
Q ss_pred HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
..... .++.+.|..+++++++..|++. .....+..... + . .++...+...
T Consensus 271 ~~l~~-------------~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l---~------------~~~~~~~~~~ 321 (409)
T TIGR00540 271 EHLID-------------CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-L---K------------PEDNEKLEKL 321 (409)
T ss_pred HHHHH-------------CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-c---C------------CCChHHHHHH
Confidence 98865 5789999999999999888754 11000110111 1 0 2446788999
Q ss_pred HHHHHHcCCCcH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHH
Q 005817 451 YEKAEAMGCLTE--DIAHRYVTLYLQLGKLDEARKLAA--KLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSI 526 (676)
Q Consensus 451 ye~al~~~p~~~--~lw~~~~~l~~~~~~~~~A~~l~~--~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~ 526 (676)
+++++..+|.++ .+...++.++.+.|++++|++.++ .++ +..|++.. +..++.+..+.|+ .+++
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~-~~~La~ll~~~g~----------~~~A 389 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAND-LAMAADAFDQAGD----------KAEA 389 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHH-HHHHHHHHHHcCC----------HHHH
Confidence 999999999999 888899999999999999999999 577 67888776 4477888887764 6888
Q ss_pred HHHHHHHHhh
Q 005817 527 FELLKCILTK 536 (676)
Q Consensus 527 ~~~f~~Al~~ 536 (676)
.++|++++..
T Consensus 390 ~~~~~~~l~~ 399 (409)
T TIGR00540 390 AAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2.6e-09 Score=109.43 Aligned_cols=342 Identities=9% Similarity=-0.017 Sum_probs=228.3
Q ss_pred HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC---
Q 005817 305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK--- 381 (676)
Q Consensus 305 ~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~--- 381 (676)
..+.++.|...|..||+..|+.+-|+...--.|... +..+.+.+....+++..|+...+.+..|..+-..++..
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~l---gd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESL---GDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHH---hhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 456789999999999999999777777654444443 34566677777888999999888887777653321110
Q ss_pred CCCCc------------CcchhH--HHHHHHHHHHHhh-----ccCchhHHHHHHHHHHHHh-----cCcc-ccccC---
Q 005817 382 DGTSE------------DIVPSQ--MQKAIQVYEEALK-----NVPSSMIFDLYTKFLMDMI-----APKK-EETRD--- 433 (676)
Q Consensus 382 ~~~~~------------~~~~~~--~~~A~~~ye~al~-----~~~~~~lw~~y~~~~~~~~-----~~~~-~d~~~--- 433 (676)
..+.+ .-...+ -..|....++.++ .+|+......|...-.... .... .|..+
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 00000 000000 1234444455554 1233222222211100000 0000 00000
Q ss_pred -----------------------------CCCC-------------------hhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817 434 -----------------------------SELP-------------------SHVEHYISHLLTVYEKAEAMGCLTEDIA 465 (676)
Q Consensus 434 -----------------------------~~~~-------------------~~~~~~~~~a~~iye~al~~~p~~~~lw 465 (676)
..+. ....|+...+..-+..+|..+|..+.+|
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ly 363 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLY 363 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHH
Confidence 0000 0133567788899999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHH
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESL 545 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~l 545 (676)
+..+.++...++.++-.+.+.+|. ...|.+++++..+.++..-.+ +++++..=|++|+..-|.....-+
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~-~ldp~n~dvYyHRgQm~flL~----------q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAE-DLDPENPDVYYHRGQMRFLLQ----------QYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHH-hcCCCCCchhHhHHHHHHHHH----------HHHHHHHHHHHHhhcChhhhHHHH
Confidence 999999999999999999999999 899999999999999887655 478888889999986654321112
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC------C--HHH
Q 005817 546 WLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRP------G--LVL 617 (676)
Q Consensus 546 W~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~------~--~~l 617 (676)
-..++.|-...-....+.|+.+.+.++. ++.....|++.+..++++++|.+.|.+|+.+.|. + +-+
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPN------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 1122222222224456677777765532 4577778899999999999999999999998776 3 235
Q ss_pred HHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 618 ~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (676)
....+.+-+. + ++++|-.|.++|++..|.+..-....++||...|+.+.
T Consensus 507 ~Ka~l~~qwk-~------d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~e 555 (606)
T KOG0547|consen 507 HKALLVLQWK-E------DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDE 555 (606)
T ss_pred hhhHhhhchh-h------hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHH
Confidence 5555555544 3 89999999999999999988999999999999988764
No 46
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.30 E-value=2.8e-07 Score=106.09 Aligned_cols=438 Identities=14% Similarity=0.051 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|...|+++++..|.+......++.+....| ...+...+++++.-.|.....-...|.... ..|+++.|..+|+++
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~ka 128 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 458899999999999998533337777776667 578999999999444444555554466664 678999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
++..|+++.++...+.......+...+...+.. .. ..+| .. ...
T Consensus 129 L~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~-l~---~~dp-------------~~------------------~~~- 172 (822)
T PRK14574 129 LKKDPTNPDLISGMIMTQADAGRGGVVLKQATE-LA---ERDP-------------TV------------------QNY- 172 (822)
T ss_pred HhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH-hc---ccCc-------------ch------------------HHH-
Confidence 999999999997655444333222222111111 00 0001 00 000
Q ss_pred hhhhhHH--HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh--
Q 005817 299 KSVDLFR--EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK-- 374 (676)
Q Consensus 299 ~~~~~~~--~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~-- 374 (676)
.....+. .++...|..+|+++++..|++.++...++..+..... ...+......-...|......|+.....-
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~---~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI---VEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 0011111 1233359999999999999998888887776665542 23444444332222222333343222211
Q ss_pred ccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc---Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV---PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~---~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
+.... ..+....+.....++|..-++..+... |... .| .......+.. ....+....++..
T Consensus 250 vr~a~-~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~---~~~~~Drl~a-----------L~~r~r~~~vi~~ 314 (822)
T PRK14574 250 VRMAV-LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADY---QRARIDRLGA-----------LLVRHQTADLIKE 314 (822)
T ss_pred Hhhcc-cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHH---HHHHHHHHHH-----------HHHhhhHHHHHHH
Confidence 11000 000011122334677888888888744 3322 33 2222221100 0124667889999
Q ss_pred HHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHHHHHHHHhccccCCCCChhch
Q 005817 451 YEKAEAMGCL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRISVEIRCVTRNSFSPSKADI 523 (676)
Q Consensus 451 ye~al~~~p~-~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~ 523 (676)
|+........ -+-+-...++.++..+.+++|..+|..++ ... |.+...-......+...+ .+
T Consensus 315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~-~~~~~~~~~~~~~~~~~~L~yA~ld~e----------~~ 383 (822)
T PRK14574 315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY-YSDGKTFRNSDDLLDADDLYYSLNESE----------QL 383 (822)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh-hccccccCCCcchHHHHHHHHHHHhcc----------cH
Confidence 9987655422 22344446788889999999999999998 533 112211111111111122 46
Q ss_pred HHHHHHHHHHHhhcChh---------hhHHHHHH----HHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHH
Q 005817 524 LSIFELLKCILTKVSAL---------ESESLWLM----ALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII 588 (676)
Q Consensus 524 ~~~~~~f~~Al~~~~~~---------~~~~lW~~----~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~ 588 (676)
+++..++++.....|.. ..-+=|.. .+..+.-.+ ..+++.++..+. ..|.+ ..+...++
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-~aP~n-----~~l~~~~A 457 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-TAPAN-----QNLRIALA 457 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHH
Confidence 77877877777643310 00011221 122222111 345666666543 45655 35555788
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc
Q 005817 589 NLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (676)
Q Consensus 589 ~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~ 655 (676)
+.+...|...+|.++++.+..+.|.+..+....+.--..++ +...|.++-..+++.+|+++
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~------e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ------EWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh------hHHHHHHHHHHHHhhCCCch
Confidence 88999999999999999999888888776655554444555 89999999999999999554
No 47
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.26 E-value=8.6e-11 Score=119.46 Aligned_cols=145 Identities=20% Similarity=0.379 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817 160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT 238 (676)
Q Consensus 160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~ 238 (676)
+|..|++|+++.+ .+.+|.+|.+|+...+....+|+.+|.+|+..+++.+.|+.+|++|++..|.+..+|..|+.|+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 6999999988764 678899999998666667899999999988657788889999999999999999999999988764
Q ss_pred HHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHH
Q 005817 239 YLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318 (676)
Q Consensus 239 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~ 318 (676)
. ++.+.||.+|++
T Consensus 83 ~-------------------------------------------------------------------~d~~~aR~lfer 95 (280)
T PF05843_consen 83 L-------------------------------------------------------------------NDINNARALFER 95 (280)
T ss_dssp T-------------------------------------------------------------------T-HHHHHHHHHH
T ss_pred h-------------------------------------------------------------------CcHHHHHHHHHH
Confidence 2 134678999999
Q ss_pred HHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817 319 AVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (676)
Q Consensus 319 Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~ 374 (676)
++..+|... .+|..|+++...++ ..+.+.++..++...+|++..++....++.
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~~v~~R~~~~~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFESKYG---DLESVRKVEKRAEELFPEDNSLELFSDRYS 151 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-HHHHHHCCT-
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 998887754 47777766655554 456788888899999998777665444443
No 48
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.25 E-value=1.4e-10 Score=117.88 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhh
Q 005817 412 IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ-LGKLDEARKLAAKLCS 490 (676)
Q Consensus 412 lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~-~~~~~~A~~l~~~al~ 490 (676)
.|..|++|..+. +.++.||.+|++|+...+.+..+|..+|.++.. .++.+.|.+||+.++
T Consensus 3 v~i~~m~~~~r~------------------~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl- 63 (280)
T PF05843_consen 3 VWIQYMRFMRRT------------------EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL- 63 (280)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHh------------------CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-
Confidence 688999988873 448999999999997767789999999999998 566777999999999
Q ss_pred ccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh-hHHHHHHHHH
Q 005817 491 GKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-SESLWLMALK 551 (676)
Q Consensus 491 ~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~-~~~lW~~~l~ 551 (676)
+.+|.+..+|..|+++++..+ +.+.+|.+|++++..++... +..||..|++
T Consensus 64 k~f~~~~~~~~~Y~~~l~~~~----------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~ 115 (280)
T PF05843_consen 64 KKFPSDPDFWLEYLDFLIKLN----------DINNARALFERAISSLPKEKQSKKIWKKFIE 115 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 899999999999999999875 58999999999999988765 5556655554
No 49
>PLN03077 Protein ECB2; Provisional
Probab=99.24 E-value=6.5e-08 Score=114.89 Aligned_cols=432 Identities=8% Similarity=-0.019 Sum_probs=276.2
Q ss_pred hhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCCHHHHHH
Q 005817 138 SGVARILEIYRLAVMR--FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH-PKVPGVWIYAAAWEFDHNLNVTAARA 213 (676)
Q Consensus 138 ~~~~~~~~iyeral~~--~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~-P~~~~lW~~~a~~e~~~~~~~~~Ar~ 213 (676)
+....+..+|+++... .| |...+...+.-|...+ ...+.+++..++..- +-+...|-..+.... ..|+++.|+.
T Consensus 267 g~~~eAl~lf~~M~~~g~~P-d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~ 344 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDP-DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEK 344 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHH
Confidence 4577889999998765 45 5566677777777766 467888998888752 235778888888875 6889999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 214 LMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 214 ~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
+|++... | +...|...+.-....+....+.. ++..-. +. . -.|+.
T Consensus 345 vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~-lf~~M~----------------~~------g-----~~Pd~---- 389 (857)
T PLN03077 345 VFSRMET--K-DAVSWTAMISGYEKNGLPDKALE-TYALME----------------QD------N-----VSPDE---- 389 (857)
T ss_pred HHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHH-HHHHHH----------------Hh------C-----CCCCc----
Confidence 9998643 3 35678888776554332222211 111000 00 0 00110
Q ss_pred chhhhhhhhhH-HHhhhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005817 294 NMESQKSVDLF-REQGLRVLQTIYSGAVEAL-PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA 371 (676)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~a~~iy~~Al~~~-p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la 371 (676)
.-+...+..+ ..++++.|..+++.+++.. ..+...+..++++|.+.+ ..+.|..+++++... +..+|..+.
T Consensus 390 -~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g---~~~~A~~vf~~m~~~---d~vs~~~mi 462 (857)
T PLN03077 390 -ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK---CIDKALEVFHNIPEK---DVISWTSII 462 (857)
T ss_pred -eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC---CHHHHHHHHHhCCCC---CeeeHHHHH
Confidence 0011111111 2357788999999998864 234567778888887764 567899999887542 456788887
Q ss_pred HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
.-+.. .++.++|..+|++.+..++.+ ..+...+.-+-. .|.++.+..+
T Consensus 463 ~~~~~-------------~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~------------------~g~l~~~~~i 511 (857)
T PLN03077 463 AGLRL-------------NNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR------------------IGALMCGKEI 511 (857)
T ss_pred HHHHH-------------CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh------------------hchHHHhHHH
Confidence 76654 467899999999998764433 233333332222 3567888888
Q ss_pred HHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817 451 YEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL 529 (676)
Q Consensus 451 ye~al~~~p-~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~ 529 (676)
+..++..+. .+..++-..++++.+.|++++|..+++.. +.+...|...|..+.+.|. .+++.++
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~----------~~~A~~l 576 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK----------GSMAVEL 576 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC----------HHHHHHH
Confidence 888887643 34455667888888999999998888764 4567788888888877764 7888888
Q ss_pred HHHHHhh-cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHH
Q 005817 530 LKCILTK-VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR 606 (676)
Q Consensus 530 f~~Al~~-~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~ 606 (676)
|++.... +.|+ ...+. ..+.-+...+ +....+|+.+.... +..+....+...++.+.+.|.+++|.+++++
T Consensus 577 f~~M~~~g~~Pd-~~T~~-~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 577 FNRMVESGVNPD-EVTFI-SLLCACSRSGMVTQGLEYFHSMEEKY----SITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHcCCCCC-cccHH-HHHHHHhhcChHHHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8887754 3332 22222 2222222222 34455566554211 1101123334557778888999999998887
Q ss_pred HHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCccc
Q 005817 607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 607 al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~ 673 (676)
.- ..++...|...+.--...+ +.+.+....+++++..|+++..+......-...|.++.
T Consensus 651 m~--~~pd~~~~~aLl~ac~~~~------~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 651 MP--ITPDPAVWGALLNACRIHR------HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred CC--CCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 52 2345667777776544445 77888888888888888877777777776666666553
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=6.2e-08 Score=104.71 Aligned_cols=258 Identities=11% Similarity=-0.006 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 308 GLRVLQTIYSGAVEALPSSF-NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~-~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
+.+.|...|.++.+..|++. .+......+... .+..+.+...++.+.+..|+++.++..++..++.
T Consensus 133 ~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~---~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~---------- 199 (409)
T TIGR00540 133 DEARANQHLEEAAELAGNDNILVEIARTRILLA---QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR---------- 199 (409)
T ss_pred CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------
Confidence 56778888888888877763 233222222221 2357788999999999999999998888888876
Q ss_pred CcchhHHHHHHHHHHHHhhcc-CchhHH-HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC----C
Q 005817 387 DIVPSQMQKAIQVYEEALKNV-PSSMIF-DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC----L 460 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~-~~~~lw-~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p----~ 460 (676)
.++++.|...+++.++.. .+..-. ..-.......+. .+..+.....+..+....| .
T Consensus 200 ---~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~---------------~~~~~~~~~~L~~~~~~~p~~~~~ 261 (409)
T TIGR00540 200 ---SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD---------------EAMADEGIDGLLNWWKNQPRHRRH 261 (409)
T ss_pred ---HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---------------HHHHhcCHHHHHHHHHHCCHHHhC
Confidence 588999999999988763 222211 000011111000 1112233446666666666 5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 461 ~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
++.++..++..+...|++++|.+++++++ +..|++.......+....... | ++.+.+.+.++++++..|
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l-~~~pd~~~~~~~~l~~~~~l~------~--~~~~~~~~~~e~~lk~~p-- 330 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGL-KKLGDDRAISLPLCLPIPRLK------P--EDNEKLEKLIEKQAKNVD-- 330 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCCcccchhHHHHHhhhcC------C--CChHHHHHHHHHHHHhCC--
Confidence 89999999999999999999999999999 888988653211111111111 0 123444444444443332
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHH--HHcCCCCCHHHH
Q 005817 541 ESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR--FLALPRPGLVLY 618 (676)
Q Consensus 541 ~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~--al~~~p~~~~l~ 618 (676)
++. ...+...++....+.|++++|++.|++ +++..|.... +
T Consensus 331 ---------------------------------~~~---~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~ 373 (409)
T TIGR00540 331 ---------------------------------DKP---KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-L 373 (409)
T ss_pred ---------------------------------CCh---hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-H
Confidence 220 002232455556778888888888884 5555554444 4
Q ss_pred HHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817 619 QNCIELENNLASVGDKDSLVNARKLFESALAT 650 (676)
Q Consensus 619 ~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~ 650 (676)
.....+....| +.+.|+++|++++..
T Consensus 374 ~~La~ll~~~g------~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 374 AMAADAFDQAG------DKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHHH
Confidence 47777777777 778888888888664
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.20 E-value=4.5e-08 Score=105.26 Aligned_cols=282 Identities=13% Similarity=0.022 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 142 RILEIYRLAVMRFKGDIELW-FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 142 ~~~~iyeral~~~p~~~~lW-~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
.+.....++-...+ ...+- ..-+......| .+.+...|.++....|+.. ...+..+.... ..|+.+.|...++++
T Consensus 102 ~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~ 179 (398)
T PRK10747 102 QVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKL 179 (398)
T ss_pred HHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 45544444443322 12332 33333434455 5788999999999999864 33445567775 678999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
++..|+++.+....+......+
T Consensus 180 ~~~~P~~~~al~ll~~~~~~~g---------------------------------------------------------- 201 (398)
T PRK10747 180 LEVAPRHPEVLRLAEQAYIRTG---------------------------------------------------------- 201 (398)
T ss_pred HhcCCCCHHHHHHHHHHHHHHH----------------------------------------------------------
Confidence 9999999877666665554332
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH-----HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ-----RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL 373 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~-----~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~ 373 (676)
+.+.|..++....+..+.+.+-.. .+..+...-......+....+.+.+.+..|+++.++..+|+.
T Consensus 202 ---------dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 202 ---------AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred ---------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 334444455544443322211111 111111110001123445556666666778899999999998
Q ss_pred hccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
.+. .++.+.|..+.+++++.-+...+...|.... .++.+++....++
T Consensus 273 l~~-------------~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~--------------------~~~~~~al~~~e~ 319 (398)
T PRK10747 273 LIE-------------CDDHDTAQQIILDGLKRQYDERLVLLIPRLK--------------------TNNPEQLEKVLRQ 319 (398)
T ss_pred HHH-------------CCCHHHHHHHHHHHHhcCCCHHHHHHHhhcc--------------------CCChHHHHHHHHH
Confidence 876 5788999999999999655555555554421 2457889999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A 533 (676)
.+..+|.++++.+.++.+..+.+++++|+..+++++ +..|++.. +..+..++...| +.+++.++|+++
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~~~-~~~La~~~~~~g----------~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDAYD-YAWLADALDRLH----------KPEEAAAMRRDG 387 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCHHH-HHHHHHHHHHcC----------CHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 88898765 344566666665 378889999999
Q ss_pred Hhhc
Q 005817 534 LTKV 537 (676)
Q Consensus 534 l~~~ 537 (676)
+..+
T Consensus 388 l~~~ 391 (398)
T PRK10747 388 LMLT 391 (398)
T ss_pred Hhhh
Confidence 8754
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.17 E-value=6.1e-08 Score=112.36 Aligned_cols=408 Identities=9% Similarity=0.037 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMR-FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 140 ~~~~~~iyeral~~-~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
...+..++..+... +..+...+...+..+.+.| .+.+.++|+++.. | +...|-..+.-.. ..|+++.|..+|++
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~-~~g~~~~A~~lf~~ 214 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLV-DAGNYREAFALFRE 214 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHH-HCcCHHHHHHHHHH
Confidence 34556677766653 3447889999999988877 4789999998854 4 4677888887775 67899999999999
Q ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 218 GLRVCPT-SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 218 al~~~p~-~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
.++..+. +...+...++.....+....++ .+.+...+ ..+ .+|. .-
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~-~l~~~~~~----------------------~g~-----~~d~-----~~ 261 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQ-QLHCCVLK----------------------TGV-----VGDT-----FV 261 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHH-HHHHHHHH----------------------hCC-----Cccc-----ee
Confidence 9876532 2345555554332211111111 01110000 000 0000 00
Q ss_pred hhhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC-CCChhhHHHHHHHh
Q 005817 297 SQKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF-LVDPKYWDWLARLK 374 (676)
Q Consensus 297 ~~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~-p~~~~~w~~la~~~ 374 (676)
+...+..+ ..+.++.|..+|+... +.+...|..++..|.+. +..+.+..+++++...- .-+..++..+...+
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~---g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALH---GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 11112222 2357889999998653 23456677777776654 35678999999987642 22345666666665
Q ss_pred ccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV--PSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~--~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye 452 (676)
.. .+.++.|.++++..++.- |+...+...++...+ .|.++.|..+|+
T Consensus 336 ~~-------------~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k------------------~G~~~~A~~vf~ 384 (697)
T PLN03081 336 SR-------------LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK------------------WGRMEDARNVFD 384 (697)
T ss_pred Hh-------------ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH------------------CCCHHHHHHHHH
Confidence 44 467899999999998763 222345444443333 377899999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817 453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC 532 (676)
Q Consensus 453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~ 532 (676)
+... .+...|...+.-+.+.|+.++|..++++........+...+...+....+.| .++++.++|+.
T Consensus 385 ~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----------~~~~a~~~f~~ 451 (697)
T PLN03081 385 RMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG----------LSEQGWEIFQS 451 (697)
T ss_pred hCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC----------cHHHHHHHHHH
Confidence 8654 2455799999999999999999999999874444445566777776666555 48999999999
Q ss_pred HHhh--cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817 533 ILTK--VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL 608 (676)
Q Consensus 533 Al~~--~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al 608 (676)
..+. +.+. ...|...++.+.+.+ +.+.++++.+- +.|+ ...+...+.-....|+++.|+.++++++
T Consensus 452 m~~~~g~~p~--~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 452 MSENHRIKPR--AMHYACMIELLGREGLLDEAYAMIRRAP--FKPT------VNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHhcCCCCC--ccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 8753 2222 223555556665554 23333333210 1111 1223345555667899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817 609 ALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (676)
Q Consensus 609 ~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~ 650 (676)
...|.+...|...+.+....| .++.|.++++..-+.
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G------~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSG------RQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCC------CHHHHHHHHHHHHHc
Confidence 988888777888888877777 889999999987764
No 53
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.8e-08 Score=109.57 Aligned_cols=262 Identities=11% Similarity=0.112 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHhhccCc-----hhHHHHHHHHHHHHhcCcccccc-----------C------------C-CCCh---
Q 005817 391 SQMQKAIQVYEEALKNVPS-----SMIFDLYTKFLMDMIAPKKEETR-----------D------------S-ELPS--- 438 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~-----~~lw~~y~~~~~~~~~~~~~d~~-----------~------------~-~~~~--- 438 (676)
+.++.++.+|++|+..+.. ..+|..|..|+..++.....+.. + + ++..
T Consensus 204 ~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~ 283 (881)
T KOG0128|consen 204 EDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVE 283 (881)
T ss_pred ccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHH
Confidence 4578888899999887543 34899999988866532111100 0 0 0100
Q ss_pred --h---hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccc
Q 005817 439 --H---VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR 513 (676)
Q Consensus 439 --~---~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~ 513 (676)
. ......+.+..+++.++..|.-...|..|++++...|.+-.-..++++++ ...+.+..+|..|..+.-..-
T Consensus 284 ~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~-~E~~~~~~~wi~y~~~~d~eL-- 360 (881)
T KOG0128|consen 284 TKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV-AEMVLDRALWIGYGVYLDTEL-- 360 (881)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HhccccHHHHhhhhhhccccc--
Confidence 0 11223455566777777777777889999999999999998888999999 778888999999875442210
Q ss_pred cCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH
Q 005817 514 NSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ 593 (676)
Q Consensus 514 ~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~ 593 (676)
. -.+.+..++-+|++.||- ...+|..++-=+++.+....-++......++.. ..+...|+.+..+
T Consensus 361 --k-----v~~~~~~~~~ra~R~cp~--tgdL~~rallAleR~re~~~vI~~~l~~~ls~~------~~l~~~~~~~rr~ 425 (881)
T KOG0128|consen 361 --K-----VPQRGVSVHPRAVRSCPW--TGDLWKRALLALERNREEITVIVQNLEKDLSMT------VELHNDYLAYRRR 425 (881)
T ss_pred --c-----cccccccccchhhcCCch--HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 0 123444557788888874 366898766434444433222322222111111 1122223333222
Q ss_pred h------cCHHHHHHHHHHHHc-------C-CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc-hHH
Q 005817 594 K------DGIQQAREMYKRFLA-------L-PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT-SLW 658 (676)
Q Consensus 594 ~------g~~~~Ar~iy~~al~-------~-~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~-~lW 658 (676)
. .+++.-|+.|..|.. . -.+...+..-++++|..++. +++.+|.+...-+...+.+. ..|
T Consensus 426 ~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~-----nmd~~R~iWn~imty~~~~iag~W 500 (881)
T KOG0128|consen 426 CTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK-----NMDKAREIWNFIMTYGGGSIAGKW 500 (881)
T ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh-----chhhhhHhhhccccCCcchHHHHH
Confidence 2 234555666666632 2 23456688889999988762 89999999998888655454 499
Q ss_pred HHHHHHHhhcCCcccCC
Q 005817 659 RDYYSTETKVSFSLLCF 675 (676)
Q Consensus 659 ~~y~~fE~~~G~~~~~~ 675 (676)
+.|+++|..||+..+|+
T Consensus 501 le~~~lE~~~g~~~~~R 517 (881)
T KOG0128|consen 501 LEAINLEREYGDGPSAR 517 (881)
T ss_pred HHHHhHHHHhCCchhHH
Confidence 99999999999999885
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.3e-08 Score=100.92 Aligned_cols=256 Identities=13% Similarity=0.097 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
.+....|.+..+..+|.......-+|.-+...| ..++-.+=-+.+..+|.++--|+..+-+.+ .-|++..||+.|-++
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl-~i~k~seARry~SKa 338 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL-MIGKYSEARRYFSKA 338 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH-HhcCcHHHHHHHHHH
Confidence 445567889999999999888877777444445 356667777889999999999999999987 678999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
....|.-...|+.|+.--...
T Consensus 339 t~lD~~fgpaWl~fghsfa~e----------------------------------------------------------- 359 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGE----------------------------------------------------------- 359 (611)
T ss_pred hhcCccccHHHHHHhHHhhhc-----------------------------------------------------------
Confidence 999999999999998642211
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
+.-++|...|..|-+..|+.. -++. .-+|...++.+.+++.+.++...+|.+|-+...++-..+.
T Consensus 360 --------~EhdQAmaaY~tAarl~~G~hlP~LYl-----gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 360 --------GEHDQAMAAYFTAARLMPGCHLPSLYL-----GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT 426 (611)
T ss_pred --------chHHHHHHHHHHHHHhccCCcchHHHH-----HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh
Confidence 123578888999988887752 2221 2244444578899999999999999999988777765543
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye 452 (676)
.+.+.+|...|+.++..+++ +. .|.--..-. ... .-..+.++.|+..|+
T Consensus 427 -------------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NL-GH~-------------~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 427 -------------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNL-GHA-------------YRKLNKYEEAIDYYQ 479 (611)
T ss_pred -------------HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhH-HHH-------------HHHHhhHHHHHHHHH
Confidence 46789999999999965442 22 243211110 000 012466889999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
+|+...|.+++.+..-+-.+...|+++.|...+.+|+ ..-|++
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n 522 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDN 522 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCcc
Confidence 9999999999999999999999999999999999999 888876
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.13 E-value=1.9e-06 Score=99.31 Aligned_cols=394 Identities=9% Similarity=-0.019 Sum_probs=232.7
Q ss_pred HhCCCCHHHHHHHHHHHH--Hcc-CchHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 152 MRFKGDIELWFKYMEFCR--QRK-NGRMKKVLAQVIRFHPKVP-GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 152 ~~~p~~~~lW~~y~~~~~--~~~-~~~~~~~~~ral~~~P~~~-~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
-..|..+. ..|.+... +.| +..+...|.+++...|.++ .+. .++.... ..|+.+.|+.++++++.-.|.+..
T Consensus 28 ~~~p~~~~--~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~ 103 (822)
T PRK14574 28 VVNPAMAD--TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAG-WAGRDQEVIDVYERYQSSMNISSR 103 (822)
T ss_pred ccCccchh--HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHH-HcCCcHHHHHHHHHhccCCCCCHH
Confidence 34555554 33443333 334 4688899999999999884 444 6666554 568899999999999832233222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHh
Q 005817 228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307 (676)
Q Consensus 228 lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (676)
.-...+.+... .+
T Consensus 104 ~llalA~ly~~-------------------------------------------------------------------~g 116 (822)
T PRK14574 104 GLASAARAYRN-------------------------------------------------------------------EK 116 (822)
T ss_pred HHHHHHHHHHH-------------------------------------------------------------------cC
Confidence 11111111111 13
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
+++.|..+|+++++..|++.+.+..+..++... +..+.+...++++...+|..... ..++.+...
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~---~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~----------- 181 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADA---GRGGVVLKQATELAERDPTVQNY-MTLSYLNRA----------- 181 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-----------
Confidence 567788888888888888776665443333332 34567777777777777774332 333333211
Q ss_pred cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcC--------cccc----cc---C---------C-CCCh---
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP--------KKEE----TR---D---------S-ELPS--- 438 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~--------~~~d----~~---~---------~-~~~~--- 438 (676)
.++..+|..+|+++++..|.+. ....|.......... ...+ .. + . +...
T Consensus 182 --~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 182 --TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred --cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 1334448888888888777644 444443332221100 0000 00 0 0 0000
Q ss_pred --hhhhhHHHHHHHHHHHHHc---CCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--cCCChHHHHHHHHHHH
Q 005817 439 --HVEHYISHLLTVYEKAEAM---GCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSG--KLSDSVQLWLLRISVE 507 (676)
Q Consensus 439 --~~~~~~~~a~~iye~al~~---~p~~~----~lw~~~~~l~~~~~~~~~A~~l~~~al~~--~~P~~~~lW~~~i~l~ 507 (676)
..-...+++..-++..+.. .|..- .+..+.+-.+...+++.++++.|+..-.. ..|..+..|..-..+.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 0011356788888887773 34322 23445666677889999999999887622 3577777777655443
Q ss_pred HHhccccCCCCChhchHHHHHHHHHHHhhcCh------hh--hHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhC----
Q 005817 508 IRCVTRNSFSPSKADILSIFELLKCILTKVSA------LE--SESLWLMALKFFMNQK-HYFDKLVEIALISVAKD---- 574 (676)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~------~~--~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~---- 574 (676)
. + .++++..+|..++..-++ .. ...|+-.+ ++..+ +.+..+++..... .|-
T Consensus 340 ~--~----------~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~---ld~e~~~~A~~~l~~~~~~-~p~~~~~ 403 (822)
T PRK14574 340 R--R----------LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL---NESEQLDKAYQFAVNYSEQ-TPYQVGV 403 (822)
T ss_pred c--C----------CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH---HhcccHHHHHHHHHHHHhc-CCcEEec
Confidence 3 3 258899999999874321 10 12233222 22211 3344445544431 221
Q ss_pred ---CCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH
Q 005817 575 ---GGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESAL 648 (676)
Q Consensus 575 ---~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al 648 (676)
.+..+.++|...+ +....-.|++.+|.+++++.+...|.+..+....++++...+ ...+|..++..+.
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg------~p~~A~~~~k~a~ 477 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARD------LPRKAEQELKAVE 477 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHh
Confidence 0112345666332 344556899999999999999999999999999999999988 8899999999999
Q ss_pred hhCCCCc
Q 005817 649 ATYDQNT 655 (676)
Q Consensus 649 ~~~~~~~ 655 (676)
...|.+.
T Consensus 478 ~l~P~~~ 484 (822)
T PRK14574 478 SLAPRSL 484 (822)
T ss_pred hhCCccH
Confidence 9888654
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=7.2e-08 Score=108.24 Aligned_cols=227 Identities=10% Similarity=-0.017 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHH--HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTK--FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.+.+++|+..|++|++..|+.. .|..-.. +....... . ...+.+.+|...+++|+..+|.++..|.
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~----------~~~~~~~~A~~~~~~Al~ldP~~~~a~~ 342 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-F----------DKQNAMIKAKEHAIKATELDHNNPQALG 342 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-c----------ccchHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3568899999999999988754 2221111 11111100 0 0135689999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW 546 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW 546 (676)
..+.++...|++++|...+++|+ +..|++...|..++.+....| +.+++...|++|+...|.......+
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~G----------~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQAN-LLSPISADIKYYYGWNLFMAG----------QLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999 899999999999988887776 4799999999999987754322222
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005817 547 LMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN 626 (676)
Q Consensus 547 ~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~ 626 (676)
...+-+.....+.+...+++++....|.. +......+..+...|+.++|+..+.++...+|.+...+......-.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-----~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDN-----PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccC-----HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 22222222222344445555543222332 2222234556778999999999999988777776655544443333
Q ss_pred hccCCCCccchHHHHHHHHHHHhhC
Q 005817 627 NLASVGDKDSLVNARKLFESALATY 651 (676)
Q Consensus 627 ~~~~~~~~~~~~~aR~lye~al~~~ 651 (676)
..+ ++++..++..++..
T Consensus 487 ~~g--------~~a~~~l~~ll~~~ 503 (553)
T PRK12370 487 QNS--------ERALPTIREFLESE 503 (553)
T ss_pred ccH--------HHHHHHHHHHHHHh
Confidence 333 36666666655543
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.07 E-value=3.4e-07 Score=100.87 Aligned_cols=321 Identities=15% Similarity=0.107 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
+....|..|+...+++.|.....|...+......| ..++....--|-.++|.++++|+..+... ++.|++..||-+|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls-~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS-EQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HhcccHHHHHHHHH
Confidence 34567889999999999999999999999998888 46777777778889999999999999998 47999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHH---HHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLNKLK---ARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
|||+.+|.+.++-.+.+.+....+..-+ .+..++... |.+ ...|..
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-------p~~--d~er~~---------------------- 280 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-------PPV--DIERIE---------------------- 280 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-------Cch--hHHHHH----------------------
Confidence 9999999987777777777665544332 232222221 100 000000
Q ss_pred chhhhhhhhhHHH-hhhHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHhcccCcHHHHH-HHHHHHHhcCCCChhhHHH
Q 005817 294 NMESQKSVDLFRE-QGLRVLQTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHD-KILSDMQRDFLVDPKYWDW 369 (676)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~a~~iy~~Al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~a~-~il~~~~~~~p~~~~~w~~ 369 (676)
+.....+..+.+ ++.+.|..+++.++....+-. +-..-+..++-.. +.++.+. .+.+...+.-.+++.-|..
T Consensus 281 -d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~---~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 281 -DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN---KQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred -HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh---HHHHHhhHHHHHHhccccCCChhhhhh
Confidence 001111222211 234667777777776322211 1111122222221 1222222 2222222222223333432
Q ss_pred HHHHhcc-ccCCCCCCCc-Ccc-----------hh--HHHHHHHHHHHHh-hccCchhHHHHHHHHHHHHhcCccccccC
Q 005817 370 LARLKMT-DSVSKDGTSE-DIV-----------PS--QMQKAIQVYEEAL-KNVPSSMIFDLYTKFLMDMIAPKKEETRD 433 (676)
Q Consensus 370 la~~~~~-~~~~~~~~~~-~~~-----------~~--~~~~A~~~ye~al-~~~~~~~lw~~y~~~~~~~~~~~~~d~~~ 433 (676)
.-..-.. ......+... ... .+ ....+...| .+ ..++....|..|.+.-.....
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~n~~~~d~~dL~~d~a~al~~-------- 426 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHF--LVEDNVWVSDDVDLYLDLADALTN-------- 426 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHH--HHHhcCChhhhHHHHHHHHHHHHh--------
Confidence 2211100 0000000000 000 00 111111111 11 122334467777666554321
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 434 SELPSHVEHYISHLLTVYEKAEAMGCL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 434 ~~~~~~~~~~~~~a~~iye~al~~~p~-~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
.|.+..|...|..++...+. +..+|...+.++...|.++.|...|++++ ...|.+.+.-.....+..+.|.
T Consensus 427 -------~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 427 -------IGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL-ILAPDNLDARITLASLYQQLGN 498 (895)
T ss_pred -------cccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCchhhhhhHHHHHHhcCC
Confidence 36688888888887776443 45689999999999999999999999999 7889888877777777766653
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=6.9e-08 Score=103.15 Aligned_cols=274 Identities=14% Similarity=0.112 Sum_probs=196.4
Q ss_pred chHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHH
Q 005817 174 GRMKKVLAQVIRFHPKVPGVWIY--AAAWEFDHNLNVTAARALMQNGLRVCPT--------SEELWVEYLRMELTYLNKL 243 (676)
Q Consensus 174 ~~~~~~~~ral~~~P~~~~lW~~--~a~~e~~~~~~~~~Ar~~~~ral~~~p~--------~~~lW~~y~~~e~~~~~~~ 243 (676)
..|...|++.-..+++.+ |+. .++..+| .+++++|+++|+.+=+..|- |..+|..-=.+++.+....
T Consensus 336 ~~A~~~~~klp~h~~nt~--wvl~q~GrayFE-l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTG--WVLSQLGRAYFE-LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHhhHHhcCCch--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 578999999777778765 553 4555553 45899999999999999993 3456655444444432111
Q ss_pred HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHH-HhhhHHHHHHHHHHHhc
Q 005817 244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR-EQGLRVLQTIYSGAVEA 322 (676)
Q Consensus 244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~iy~~Al~~ 322 (676)
++.. ....|+.|-.++ ..|. +++.++|.+.|++|++.
T Consensus 413 -----Li~~-----------------~~~sPesWca~G--------------------NcfSLQkdh~~Aik~f~RAiQl 450 (638)
T KOG1126|consen 413 -----LIDT-----------------DPNSPESWCALG--------------------NCFSLQKDHDTAIKCFKRAIQL 450 (638)
T ss_pred -----HHhh-----------------CCCCcHHHHHhc--------------------chhhhhhHHHHHHHHHHHhhcc
Confidence 1110 122344443321 2222 35779999999999999
Q ss_pred CCCchhHHHHHHHHHHHhccc--CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHH
Q 005817 323 LPSSFNLRQRFFEIVEATNLA--QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVY 400 (676)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~--~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~y 400 (676)
.|.. .+...++ -+|.. ...+.+..-+..++...|.+..+|+-++..+++ +++++.|.-.|
T Consensus 451 dp~f-aYayTLl----GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-------------qek~e~Ae~~f 512 (638)
T KOG1126|consen 451 DPRF-AYAYTLL----GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-------------QEKLEFAEFHF 512 (638)
T ss_pred CCcc-chhhhhc----CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-------------cchhhHHHHHH
Confidence 8853 2221111 12211 135678888999999999999999999999987 58899999999
Q ss_pred HHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH
Q 005817 401 EEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE 480 (676)
Q Consensus 401 e~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~ 480 (676)
++|++..|.+..-..++...+.. .|..++|+.+|++|+..+|+++---+.-+.++...+++++
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~-----------------~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQ-----------------LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHH-----------------hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 99999999877555555443332 3678999999999999999999888888999999999999
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 481 ARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 481 A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
|+..+++.- +..|+...++......+.+.+. .+.+..-|--|+..-|
T Consensus 576 al~~LEeLk-~~vP~es~v~~llgki~k~~~~----------~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 576 ALQELEELK-ELVPQESSVFALLGKIYKRLGN----------TDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHH-HhCcchHHHHHHHHHHHHHHcc----------chHHHHhhHHHhcCCC
Confidence 999999988 8899998888888888877664 3445455555555444
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=1.4e-07 Score=105.94 Aligned_cols=189 Identities=14% Similarity=0.021 Sum_probs=126.5
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc------ccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCC
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN------LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVS 380 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe------~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~ 380 (676)
.+.+.|...|++|++..|++...+..+..++.... ..+....+...++++++..|+++.+|..+|..+..
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~---- 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI---- 350 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Confidence 35678888888888888887665544433222111 11124577788888888888888888888777654
Q ss_pred CCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC
Q 005817 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC 459 (676)
Q Consensus 381 ~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p 459 (676)
.+++++|...|+++++..|+.. .|..+...... .|.+++|...|++++..+|
T Consensus 351 ---------~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~------------------~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 351 ---------HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM------------------AGQLEEALQTINECLKLDP 403 (553)
T ss_pred ---------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCC
Confidence 4678888888888888877654 34333222222 3667888888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK-LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 460 ~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~-~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
.++..+...+..+...|++++|...+++++ .. .|+++..+...+.+....| +.++++..+.+.+...
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l-~~~~p~~~~~~~~la~~l~~~G----------~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELR-SQHLQDNPILLSMQVMFLSLKG----------KHELARKLTKEISTQE 471 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHH-HhccccCHHHHHHHHHHHHhCC----------CHHHHHHHHHHhhhcc
Confidence 876655444444556778888888888887 44 4667777766666665555 3677777777755443
No 60
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.3e-06 Score=86.74 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=120.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
..+..++|...|++|+..+|.....|...+.=+...+|...|..-|++|+ ..+|.+-+.|.-..+.+.-.+-
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di~p~DyRAWYGLGQaYeim~M------- 413 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-DINPRDYRAWYGLGQAYEIMKM------- 413 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-hcCchhHHHHhhhhHHHHHhcc-------
Confidence 44567899999999999999999999999888888999999999999999 8999999999987776654321
Q ss_pred hhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817 520 KADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~ 599 (676)
+.=+.-.|++|+. +.|.+ +.++.+..+...+++..++
T Consensus 414 ---h~YaLyYfqkA~~-----------------------------------~kPnD-----sRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 414 ---HFYALYYFQKALE-----------------------------------LKPND-----SRLWVALGECYEKLNRLEE 450 (559)
T ss_pred ---hHHHHHHHHHHHh-----------------------------------cCCCc-----hHHHHHHHHHHHHhccHHH
Confidence 1223333444433 33333 1222345555566677777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC---C---C-C--chHHHHHHHHHhhcCC
Q 005817 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY---D---Q-N--TSLWRDYYSTETKVSF 670 (676)
Q Consensus 600 Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~---~---~-~--~~lW~~y~~fE~~~G~ 670 (676)
|.+.|.+++.........+...++|...++ +.+.|-+.|++.++.. + + . ..+| -++++.++++
T Consensus 451 AiKCykrai~~~dte~~~l~~LakLye~l~------d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~ 522 (559)
T KOG1155|consen 451 AIKCYKRAILLGDTEGSALVRLAKLYEELK------DLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcc
Confidence 777777777666565666666777766666 6777777777777743 1 1 1 1445 3567777666
Q ss_pred ccc
Q 005817 671 SLL 673 (676)
Q Consensus 671 ~~~ 673 (676)
.++
T Consensus 523 ~~~ 525 (559)
T KOG1155|consen 523 FDE 525 (559)
T ss_pred hHH
Confidence 553
No 61
>PLN03077 Protein ECB2; Provisional
Probab=99.04 E-value=8.3e-07 Score=105.54 Aligned_cols=407 Identities=8% Similarity=-0.018 Sum_probs=254.1
Q ss_pred hhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMR-FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 138 ~~~~~~~~iyeral~~-~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~ 215 (676)
+....+..++..+.+. ++.|...+...+..+.+.| .+.+.++|+++.. .+...|-..+.-.. .+|+++.|..+|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~-~~g~~~~A~~lf 377 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYE-KNGLPDKALETY 377 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHH-hCCCHHHHHHHH
Confidence 3456677888887765 5668899999999998887 4789999998743 35677888888775 789999999999
Q ss_pred HHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 216 QNGLRV--CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 216 ~ral~~--~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
++..+. .|+. ..+...+......+....+.. +.+...+. .+ .++.
T Consensus 378 ~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~-l~~~~~~~----------------------g~-----~~~~---- 424 (857)
T PLN03077 378 ALMEQDNVSPDE-ITIASVLSACACLGDLDVGVK-LHELAERK----------------------GL-----ISYV---- 424 (857)
T ss_pred HHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHH-HHHHHHHh----------------------CC-----Ccch----
Confidence 987554 3653 334444332221111111111 11110000 00 0000
Q ss_pred chhhhhhhhhH-HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817 294 NMESQKSVDLF-REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR 372 (676)
Q Consensus 294 ~~~~~~~~~~~-~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~ 372 (676)
.-+...+..+ ..++++.|..+|++..+ + +...|..++..+... +..+.+..+++++....+-+..++..+..
T Consensus 425 -~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~vs~~~mi~~~~~~---g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 425 -VVANALIEMYSKCKCIDKALEVFHNIPE--K-DVISWTSIIAGLRLN---NRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHC---CCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 0011112222 23578899999987543 2 334577766666543 34577888999988765555555554444
Q ss_pred HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC--chhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP--SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~--~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
.+-. .+.++.+.+++...++.-- +..+....++...+ .|.++.|..+
T Consensus 498 a~~~-------------~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k------------------~G~~~~A~~~ 546 (857)
T PLN03077 498 ACAR-------------IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR------------------CGRMNYAWNQ 546 (857)
T ss_pred HHhh-------------hchHHHhHHHHHHHHHhCCCccceechHHHHHHHH------------------cCCHHHHHHH
Confidence 4422 4678889999988887532 22233333333222 4778999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHH
Q 005817 451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELL 530 (676)
Q Consensus 451 ye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f 530 (676)
|+.. +.+...|...+.-+.+.|+.++|..++++........+...+...+....+.| .++++.++|
T Consensus 547 f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----------~v~ea~~~f 612 (857)
T PLN03077 547 FNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----------MVTQGLEYF 612 (857)
T ss_pred HHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----------hHHHHHHHH
Confidence 9886 45677899999999999999999999998873333333344555555555544 488999999
Q ss_pred HHHHhh--cChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHH
Q 005817 531 KCILTK--VSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKR 606 (676)
Q Consensus 531 ~~Al~~--~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~ 606 (676)
+..... +.++ ...+...++.+.+.+ +.+..+++.+- +.|+ ...+...+.-....|+.+.+....++
T Consensus 613 ~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd------~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 613 HSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKMP--ITPD------PAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred HHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 988743 3332 234555556665554 34444444321 2222 23333455555568899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh
Q 005817 607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALA 649 (676)
Q Consensus 607 al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~ 649 (676)
++++.|.+...|.....+....| ..+.|.++.+..-+
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g------~~~~a~~vr~~M~~ 719 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAG------KWDEVARVRKTMRE 719 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCC------ChHHHHHHHHHHHH
Confidence 99998988888888777776666 67777777766654
No 62
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=8.8e-06 Score=83.67 Aligned_cols=252 Identities=10% Similarity=0.052 Sum_probs=159.8
Q ss_pred HhhhHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCC
Q 005817 306 EQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKD 382 (676)
Q Consensus 306 ~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~ 382 (676)
..+++.|..+|+..+++.|-.. +++... +|.+-..+...-+|..+ ...+---|++....|.++-
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~--LYv~~~~skLs~LA~~v----~~idKyR~ETCCiIaNYYS------- 341 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNV--LYVKNDKSKLSYLAQNV----SNIDKYRPETCCIIANYYS------- 341 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHH--HHHHhhhHHHHHHHHHH----HHhccCCccceeeehhHHH-------
Confidence 3588999999999999877542 222221 11110000001112222 2222233556666666663
Q ss_pred CCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc
Q 005817 383 GTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461 (676)
Q Consensus 383 ~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~ 461 (676)
..++.++|...|++||+..|... .|...-.-.++ .++...|++.|.+|++.+|.+
T Consensus 342 ------lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE------------------mKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 342 ------LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE------------------MKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred ------HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH------------------hcccHHHHHHHHHHHhcCchh
Confidence 25789999999999999888643 67543221122 355789999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~ 541 (676)
...|...++.+.-.+-+.=|+-.+++|+ ..-|++..+|....+.+.+.+ .++++.+.|.+|+.....+
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~----------~~~eAiKCykrai~~~dte- 465 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKAL-ELKPNDSRLWVALGECYEKLN----------RLEEAIKCYKRAILLGDTE- 465 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHhc----------cHHHHHHHHHHHHhccccc-
Confidence 9999999999999999999999999999 899999999999999998876 4799999999999754332
Q ss_pred hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhh--hhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005817 542 SESLWLMALKFFMNQK--HYFDKLVEIALISV--AKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFL 608 (676)
Q Consensus 542 ~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al 608 (676)
...+|.. ++.+++-. +.+-..|++.+... ....+ +.........+.|..+.+++++|-..-.+++
T Consensus 466 ~~~l~~L-akLye~l~d~~eAa~~yek~v~~~~~eg~~~-~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRL-AKLYEELKDLNEAAQYYEKYVEVSELEGEID-DETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 2345543 23333322 22333344444311 01110 0011111124566777778887755444444
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=1.2e-07 Score=97.49 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh--hHHHHHHHhccccCCCCCCC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWLARLKMTDSVSKDGTS 385 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~--~w~~la~~~~~~~~~~~~~~ 385 (676)
+++.|...|++|++..|++...+...-.++.. .+..+.+...++++++.+|+++. +|..++..
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~---~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~------------ 177 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYY---GGRYELAQDDLLAFYQDDPNDPYRALWLYLAES------------ 177 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc------------
Confidence 34555666666666666655444433222211 12455666666666666666652 23322221
Q ss_pred cCcchhHHHHHHHHHHHHhhccCchhHHHHH-HHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817 386 EDIVPSQMQKAIQVYEEALKNVPSSMIFDLY-TKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464 (676)
Q Consensus 386 ~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l 464 (676)
.++.++|...|++++...+.. .|... ..+..... + ....++.+...++.+...+|..++.
T Consensus 178 ----~~~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~lg~~-----~---------~~~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 178 ----KLDPKQAKENLKQRYEKLDKE-QWGWNIVEFYLGKI-----S---------EETLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred ----cCCHHHHHHHHHHHHhhCCcc-ccHHHHHHHHccCC-----C---------HHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 245788888887776544322 23211 11111100 0 0112233333334444445666789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHH
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIR 509 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~ 509 (676)
|...+..+...|++++|+..|++|+ ...| ++++.-...+.+...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al-~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLAL-ANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7665 566666666666654
No 64
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.98 E-value=1.3e-06 Score=96.46 Aligned_cols=332 Identities=13% Similarity=0.108 Sum_probs=189.0
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE 252 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~ 252 (676)
.+.|..++..+++..|.++..|...+... ++.|++++|-...-.|-..+|.+.++|..+..+-...
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~Iy-EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~------------- 220 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIY-EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL------------- 220 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHH-HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc-------------
Confidence 46788899999999999999999988887 6888999999999999899998888998887664432
Q ss_pred ccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHH
Q 005817 253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR 332 (676)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~ 332 (676)
++++.|+..|.+||+..|.+.++...
T Consensus 221 ------------------------------------------------------~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 221 ------------------------------------------------------GNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred ------------------------------------------------------ccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 25678889999999998887655443
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-
Q 005817 333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM- 411 (676)
Q Consensus 333 ~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~- 411 (676)
-..++.+ .|...+|...|.+.+..+|...
T Consensus 247 rs~L~~~--------------------------------------------------~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 247 RSSLYQK--------------------------------------------------TGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHHHH--------------------------------------------------hChHHHHHHHHHHHHhhCCchhH
Confidence 3333222 2556667777777777777432
Q ss_pred HHH-----HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHhcCCHHHHHHH
Q 005817 412 IFD-----LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC--LTEDIAHRYVTLYLQLGKLDEARKL 484 (676)
Q Consensus 412 lw~-----~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p--~~~~lw~~~~~l~~~~~~~~~A~~l 484 (676)
.|. .+++.... .+..++|..+++.++.... .+.+-.--++.+++....++.|...
T Consensus 277 er~~d~i~~~~~~~~~------------------~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFIT------------------HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 111 11111111 1223788888888887422 2233344678888888888887766
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhh-hHHHH
Q 005817 485 AAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALES--ESLWLMALKFFMNQ-KHYFD 561 (676)
Q Consensus 485 ~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~--~~lW~~~l~~~~~~-~~~~~ 561 (676)
.-..+....-++..-|-.+ +.+... -.++-.++...+ .++....+....-. .+..+
T Consensus 339 i~~~~~r~~e~d~~e~~~~---~~~~~~------------------~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e 397 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTD---ERRREE------------------PNALCEVGKELSYDLRVIRLMICLVHLKERELLE 397 (895)
T ss_pred HHHHhccccCCChhhhhhh---hhcccc------------------ccccccCCCCCCccchhHhHhhhhhcccccchHH
Confidence 5555521111222222111 000000 000000111100 11111111111100 11112
Q ss_pred HHHHHHHHh-hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhccCCCCccchHH
Q 005817 562 KLVEIALIS-VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG-LVLYQNCIELENNLASVGDKDSLVN 639 (676)
Q Consensus 562 ~~~~~a~~~-~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~-~~l~~~~i~lE~~~~~~~~~~~~~~ 639 (676)
-+....... +.+.. ..++....++.+...|.++.|..+|..++..++.. ..+|...+.....++ ..+.
T Consensus 398 ~ll~~l~~~n~~~~d----~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~------e~e~ 467 (895)
T KOG2076|consen 398 ALLHFLVEDNVWVSD----DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG------EYEE 467 (895)
T ss_pred HHHHHHHHhcCChhh----hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh------hHHH
Confidence 222211110 11111 12233233455666777788888877777655443 347777777766666 7778
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHhhcCCc
Q 005817 640 ARKLFESALATYDQNTSLWRDYYSTETKVSFS 671 (676)
Q Consensus 640 aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~ 671 (676)
|-..|++++...|.+.++=+.-..+-...|+.
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNH 499 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Confidence 88888888887776666666666665555554
No 65
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=2e-07 Score=99.72 Aligned_cols=261 Identities=15% Similarity=0.058 Sum_probs=174.9
Q ss_pred hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--hcccCcHHHHHHHH-HHHHhcCCCChhhHHHHHHHhcccc
Q 005817 302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEA--TNLAQSDDMHDKIL-SDMQRDFLVDPKYWDWLARLKMTDS 378 (676)
Q Consensus 302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~--fe~~~~~~~a~~il-~~~~~~~p~~~~~w~~la~~~~~~~ 378 (676)
..|+-.+++.|+.+|+.+-..-|-.++- .++|.. +.+ ..+.+...+ ..++...|++|++|..++..+-.
T Consensus 362 ayFEl~~Y~~a~~~F~~~r~~~p~rv~~----meiyST~LWHL--q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL-- 433 (638)
T KOG1126|consen 362 AYFELIEYDQAERIFSLVRRIEPYRVKG----MEIYSTTLWHL--QDEVALSYLAQDLIDTDPNSPESWCALGNCFSL-- 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc----hhHHHHHHHHH--HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh--
Confidence 4445568899999999888776643211 112211 111 122333333 56778899999999999987643
Q ss_pred CCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458 (676)
Q Consensus 379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~ 458 (676)
+++.+.|+..|++|++..|. ..|+-.+... .......+++|...|..|+..+
T Consensus 434 -----------Qkdh~~Aik~f~RAiQldp~----faYayTLlGh-------------E~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 434 -----------QKDHDTAIKCFKRAIQLDPR----FAYAYTLLGH-------------ESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred -----------hhHHHHHHHHHHHhhccCCc----cchhhhhcCC-------------hhhhhHHHHhHHHHHHhhhcCC
Confidence 68899999999999998886 2344333321 0112356899999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
|.+...|...+-.+.++++++.|.--+++|+ ..+|.+..+-.-....+.+.+. .+++.++|++|+..-|
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~-~INP~nsvi~~~~g~~~~~~k~----------~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV-EINPSNSVILCHIGRIQHQLKR----------KDKALQLYEKAIHLDP 554 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh-cCCccchhHHhhhhHHHHHhhh----------hhHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999 9999999888888888877664 6889999999998655
Q ss_pred hhhhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH
Q 005817 539 ALESESLWLMALKFFM-NQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV 616 (676)
Q Consensus 539 ~~~~~~lW~~~l~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~ 616 (676)
.+ .+..+....-++. .+.+.+-..++... .+.|+.. .+.-..+....+.|+.+.|..-|.-|..+.|....
T Consensus 555 kn-~l~~~~~~~il~~~~~~~eal~~LEeLk-~~vP~es-----~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 555 KN-PLCKYHRASILFSLGRYVEALQELEELK-ELVPQES-----SVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CC-chhHHHHHHHHHhhcchHHHHHHHHHHH-HhCcchH-----HHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 43 2222221110111 11122222233222 2334431 22213344456678888888888888888777665
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.93 E-value=4.2e-07 Score=89.36 Aligned_cols=199 Identities=11% Similarity=0.057 Sum_probs=126.1
Q ss_pred CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~ 235 (676)
....+...+..+...| ...+...+++++..+|.++..|...+.... ..|+++.|...|++++...|.+..+|..++.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 3566666666666655 467777777777777777777777777765 56777888888888887777766655555443
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHH
Q 005817 236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI 315 (676)
Q Consensus 236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 315 (676)
.... ++++.|...
T Consensus 109 ~~~~-------------------------------------------------------------------g~~~~A~~~ 121 (234)
T TIGR02521 109 LCQQ-------------------------------------------------------------------GKYEQAMQQ 121 (234)
T ss_pred HHHc-------------------------------------------------------------------ccHHHHHHH
Confidence 3211 244566777
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHH
Q 005817 316 YSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQK 395 (676)
Q Consensus 316 y~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~ 395 (676)
|++++...+ .|.....|..++..+.. .++++.
T Consensus 122 ~~~~~~~~~-----------------------------------~~~~~~~~~~l~~~~~~-------------~g~~~~ 153 (234)
T TIGR02521 122 FEQAIEDPL-----------------------------------YPQPARSLENAGLCALK-------------AGDFDK 153 (234)
T ss_pred HHHHHhccc-----------------------------------cccchHHHHHHHHHHHH-------------cCCHHH
Confidence 777665321 11222333344444433 356777
Q ss_pred HHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 005817 396 AIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ 474 (676)
Q Consensus 396 A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~ 474 (676)
|...|+++++..|... .|......... .|++++|...+++++...|.++..+...+.++..
T Consensus 154 A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 154 AEKYLTRALQIDPQRPESLLELAELYYL------------------RGQYKDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7778877777666532 33333222222 3567778888888877777777777777888888
Q ss_pred cCCHHHHHHHHHHHh
Q 005817 475 LGKLDEARKLAAKLC 489 (676)
Q Consensus 475 ~~~~~~A~~l~~~al 489 (676)
.|+.+.|+.+.+.+.
T Consensus 216 ~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 216 LGDVAAAQRYGAQLQ 230 (234)
T ss_pred HhhHHHHHHHHHHHH
Confidence 888888887776665
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=9.3e-08 Score=89.73 Aligned_cols=175 Identities=14% Similarity=-0.023 Sum_probs=121.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
+|+...|+.-+++|++.+|.++..|...+.++...|..+.|.+-|++|+ +..|++.++...|.-+.-.+|.
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl-sl~p~~GdVLNNYG~FLC~qg~-------- 118 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL-SLAPNNGDVLNNYGAFLCAQGR-------- 118 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH-hcCCCccchhhhhhHHHHhCCC--------
Confidence 4778999999999999999999999999999999999999999999999 8999999999999988887764
Q ss_pred hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHH
Q 005817 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA 600 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~A 600 (676)
.+++...|.+|+.. |. |.... .-+....-...+.|..+.|
T Consensus 119 --~~eA~q~F~~Al~~-P~------------Y~~~s-------------------------~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 119 --PEEAMQQFERALAD-PA------------YGEPS-------------------------DTLENLGLCALKAGQFDQA 158 (250)
T ss_pred --hHHHHHHHHHHHhC-CC------------CCCcc-------------------------hhhhhhHHHHhhcCCchhH
Confidence 68888888888763 11 00000 0000111113345566666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC-CCchHHHHHHHHHhhcCCc
Q 005817 601 REMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTETKVSFS 671 (676)
Q Consensus 601 r~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~~lW~~y~~fE~~~G~~ 671 (676)
+..|++++...|...........++...+ ++-.||..+++.....+ +-..+|+. |+|+...||-
T Consensus 159 ~~~l~raL~~dp~~~~~~l~~a~~~~~~~------~y~~Ar~~~~~~~~~~~~~A~sL~L~-iriak~~gd~ 223 (250)
T COG3063 159 EEYLKRALELDPQFPPALLELARLHYKAG------DYAPARLYLERYQQRGGAQAESLLLG-IRIAKRLGDR 223 (250)
T ss_pred HHHHHHHHHhCcCCChHHHHHHHHHHhcc------cchHHHHHHHHHHhcccccHHHHHHH-HHHHHHhccH
Confidence 66666666666665555556666655555 55666666666655554 33355554 4566655554
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.87 E-value=5.3e-07 Score=88.60 Aligned_cols=189 Identities=10% Similarity=-0.040 Sum_probs=136.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
.++++.|...+++++..+|.+...+...+..+...|++++|...+++++ ...|.+...|..++.+....+
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~g--------- 113 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL-TLNPNNGDVLNNYGTFLCQQG--------- 113 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcc---------
Confidence 3678999999999999999999999999999999999999999999999 889999999998888887765
Q ss_pred hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHH
Q 005817 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~ 598 (676)
+.+++.+.|.+++...+.......|......+...+ +.+...+++++.. .|.. ......++......|+++
T Consensus 114 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 114 -KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-DPQR-----PESLLELAELYYLRGQYK 186 (234)
T ss_pred -cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCC-----hHHHHHHHHHHHHcCCHH
Confidence 478899999999874321112223332222222222 3445556655542 2322 223334566677789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 599 ~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
+|...+++++...|.+...+...+.+....+ +.+.++.+.+.+...+|
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALG------DVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh------hHHHHHHHHHHHHhhCc
Confidence 9999999998876666666656666666666 78888888888776544
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.86 E-value=6.6e-06 Score=88.53 Aligned_cols=285 Identities=13% Similarity=0.051 Sum_probs=182.8
Q ss_pred HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhh-HHHHHHHhccccCCCCCC
Q 005817 306 EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY-WDWLARLKMTDSVSKDGT 384 (676)
Q Consensus 306 ~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~-w~~la~~~~~~~~~~~~~ 384 (676)
+|+++.|++...++-+..+. +.+.. ++-..... ..+..+.+...+.++.+..|++... ....++.++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~-llaA~aA~-~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-------- 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNY-LLAAEAAQ-QRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-------- 165 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHH-HHHHHHHH-HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--------
Confidence 56788888777766554322 22222 11111112 2246788999999999988888543 3444666654
Q ss_pred CcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817 385 SEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (676)
Q Consensus 385 ~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~ 463 (676)
.++++.|...+++.++..|.+. ....-...... .|+.+.+..++.+.....+.+++
T Consensus 166 -----~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~------------------~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 166 -----RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR------------------TGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred -----CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHHcCCCCHH
Confidence 4788999999999999888654 22222222222 47789999999998887666544
Q ss_pred H--------HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 464 I--------AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 464 l--------w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
- |...........+.+...++++..- ...|+++.++..++......| +.+++.++++++++
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp-~~~~~~~~~~~~~A~~l~~~g----------~~~~A~~~L~~~l~ 291 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQS-RKTRHQVALQVAMAEHLIECD----------DHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCC-HHHhCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHh
Confidence 2 2222222223344555566666655 567889999999999888876 47888888999988
Q ss_pred hcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCH
Q 005817 536 KVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGL 615 (676)
Q Consensus 536 ~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~ 615 (676)
.-+ . ..+...+........+...+..+...+ ..|++ +.+...++....+.|++++|+..|+++++..|.+.
T Consensus 292 ~~~-~--~~l~~l~~~l~~~~~~~al~~~e~~lk-~~P~~-----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 292 RQY-D--ERLVLLIPRLKTNNPEQLEKVLRQQIK-QHGDT-----PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred cCC-C--HHHHHHHhhccCCChHHHHHHHHHHHh-hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 433 2 223333332111111222222222222 23443 45555788889999999999999999999876654
Q ss_pred HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817 616 VLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651 (676)
Q Consensus 616 ~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~ 651 (676)
.+..+..+....| +.+.|..+|.+++...
T Consensus 363 -~~~~La~~~~~~g------~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 -DYAWLADALDRLH------KPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHcC------CHHHHHHHHHHHHhhh
Confidence 4556777777877 8899999999999865
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.9e-06 Score=88.30 Aligned_cols=183 Identities=9% Similarity=0.006 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
..+.....+.+..++..|-+.....--+-. -.+.+ .....-.+=.+++..+|+.+..|+..|-+++.
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~--l~el~-~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~---------- 324 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIAC--LYELG-KSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM---------- 324 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHH--HHHhc-ccchHHHHHHHHHHhCCCCCcchhhHHHHHHH----------
Confidence 367788888888888877664433221111 12222 12233334468899999999999999998876
Q ss_pred CcchhHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc--HH
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT--ED 463 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~--~~ 463 (676)
.+++.+||..|-+|..-.|+ ..-|..|....- .++.-++|...|..|-...|.+ |.
T Consensus 325 ---i~k~seARry~SKat~lD~~fgpaWl~fghsfa------------------~e~EhdQAmaaY~tAarl~~G~hlP~ 383 (611)
T KOG1173|consen 325 ---IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA------------------GEGEHDQAMAAYFTAARLMPGCHLPS 383 (611)
T ss_pred ---hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh------------------hcchHHHHHHHHHHHHHhccCCcchH
Confidence 46788999999999876665 336776654322 1355688999999998876554 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+|+.. =+.+.++.+-|.+.+..|+ ..+|.++-+.....-+.-..+ ...++...|+.++..
T Consensus 384 LYlgm--ey~~t~n~kLAe~Ff~~A~-ai~P~Dplv~~Elgvvay~~~----------~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 384 LYLGM--EYMRTNNLKLAEKFFKQAL-AIAPSDPLVLHELGVVAYTYE----------EYPEALKYFQKALEV 443 (611)
T ss_pred HHHHH--HHHHhccHHHHHHHHHHHH-hcCCCcchhhhhhhheeehHh----------hhHHHHHHHHHHHHH
Confidence 54432 2235788999999999999 899988766554432222222 356777777777743
No 71
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.81 E-value=7.2e-08 Score=100.00 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=106.4
Q ss_pred HHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHh
Q 005817 74 IVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMR 153 (676)
Q Consensus 74 i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~ 153 (676)
|.++...|+..+..+|.++..|++||+|...+...-..+ .....+...+-..||++|++.
T Consensus 1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--------------------~~~~~a~~E~klsilerAL~~ 60 (321)
T PF08424_consen 1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--------------------KAERRALAERKLSILERALKH 60 (321)
T ss_pred CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--------------------hhhHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999987654211100 011224567788999999999
Q ss_pred CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCC
Q 005817 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN--LNVTAARALMQNGLRVCPT 224 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~--~~~~~Ar~~~~ral~~~p~ 224 (676)
+|++..||+.|++.+.+.. .+.+.+.+++++..+|+++.+|..|+.+..... -+++.++.+|.++|+....
T Consensus 61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765 467899999999999999999999999986422 3588999999999987653
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=3.7e-06 Score=86.58 Aligned_cols=234 Identities=13% Similarity=-0.046 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHhhccCch--hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSS--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~--~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
...+.++.-+.+.|...+.. .....|.. ..... ...|..+.|+..|++++..+|.++..|...
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~--~g~~~-------------~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l 104 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYE--RGVLY-------------DSLGLRALARNDFSQALALRPDMADAYNYL 104 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHH--HHHHH-------------HHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 45677888888888754421 11111211 11110 013678899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLM 548 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~ 548 (676)
+..+...|++++|...+++++ +..|++...|..++......| +.+++.+.|++++...|......+|..
T Consensus 105 g~~~~~~g~~~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g----------~~~eA~~~~~~al~~~P~~~~~~~~~~ 173 (296)
T PRK11189 105 GIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAYLNRGIALYYGG----------RYELAQDDLLAFYQDDPNDPYRALWLY 173 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999999999 899999999999888777665 479999999999998775533456653
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHH--HHHHHHHHc----CCCCCHHHHHHHH
Q 005817 549 ALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA--REMYKRFLA----LPRPGLVLYQNCI 622 (676)
Q Consensus 549 ~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~A--r~iy~~al~----~~p~~~~l~~~~i 622 (676)
... .....+.+...+.++.....+ ..|. +.......|+...+ .+.+..++. ..|.....|....
T Consensus 174 l~~-~~~~~~~A~~~l~~~~~~~~~-------~~~~--~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg 243 (296)
T PRK11189 174 LAE-SKLDPKQAKENLKQRYEKLDK-------EQWG--WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLA 243 (296)
T ss_pred HHH-ccCCHHHHHHHHHHHHhhCCc-------cccH--HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 221 111113333344333321111 2333 22222234544333 333333222 2233345566666
Q ss_pred HHHhhccCCCCccchHHHHHHHHHHHhhCC-CCchHHHHHHHHHh
Q 005817 623 ELENNLASVGDKDSLVNARKLFESALATYD-QNTSLWRDYYSTET 666 (676)
Q Consensus 623 ~lE~~~~~~~~~~~~~~aR~lye~al~~~~-~~~~lW~~y~~fE~ 666 (676)
......| +.+.|+..|++|+...| +.+..=..-++++.
T Consensus 244 ~~~~~~g------~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 244 KYYLSLG------DLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHHHHCC------CHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 6666777 89999999999999987 43333333333433
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=0.00032 Score=76.79 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
+.-.+..+++--+..|..+..+|-.+.=++...| +..+.+.|++++...=...+.|..++.-.. ..|.-..|..+.+.
T Consensus 304 ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~s-aag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 304 ILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYS-AAGSDSKAVNLLRE 382 (799)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH-HhccchHHHHHHHh
Confidence 3344555555556677778888877776666667 578889999998877777788888877663 56677788889998
Q ss_pred HHHhC--CCCHHHHHHHHHHHH
Q 005817 218 GLRVC--PTSEELWVEYLRMEL 237 (676)
Q Consensus 218 al~~~--p~~~~lW~~y~~~e~ 237 (676)
.+... |.+..+.+...++..
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred hcccccCCCcchHHHHHHHHHH
Confidence 88888 666666666555543
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=0.00048 Score=74.05 Aligned_cols=367 Identities=14% Similarity=0.087 Sum_probs=205.9
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGE 252 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~ 252 (676)
+.+-.++.+..|..+|.+++---+-+-.. ...|+-+.|-.....|++..+.|.--|.-+.-+.-.
T Consensus 23 YkkgLK~~~~iL~k~~eHgeslAmkGL~L-~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-------------- 87 (700)
T KOG1156|consen 23 YKKGLKLIKQILKKFPEHGESLAMKGLTL-NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-------------- 87 (700)
T ss_pred HHhHHHHHHHHHHhCCccchhHHhccchh-hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh--------------
Confidence 44567788888889998876444333332 367899999999999999999998888877633211
Q ss_pred ccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHH
Q 005817 253 DKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQR 332 (676)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~ 332 (676)
.++++.|.+.|.+|+..-|+|.++|..
T Consensus 88 -----------------------------------------------------dK~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 88 -----------------------------------------------------DKKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred -----------------------------------------------------hhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 136788999999999999999988877
Q ss_pred HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc---Cc
Q 005817 333 FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV---PS 409 (676)
Q Consensus 333 ~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~---~~ 409 (676)
+--+-.+.. ..+.....=..+++..|..-..|+.+|..... .+....|..+.++-.+.. |+
T Consensus 115 lslLQ~QmR---d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-------------~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 115 LSLLQIQMR---DYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-------------LGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHHHHHH---hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhccCCC
Confidence 632222221 23344455567788899999999998877654 467777777776666654 33
Q ss_pred hhHHHHHHHHHHHH-hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHH
Q 005817 410 SMIFDLYTKFLMDM-IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIAHRYVTLYLQLGKLDEARKLA 485 (676)
Q Consensus 410 ~~lw~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~---~~~lw~~~~~l~~~~~~~~~A~~l~ 485 (676)
......-.-+..+. ... ..|..+ .+++......+. ....-..-++++.+.+++++|..+|
T Consensus 179 ~~~~e~se~~Ly~n~i~~-------------E~g~~q---~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILI-------------EAGSLQ---KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HcccHH---HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 22111111111110 000 011222 223333322221 2233445678888888999999999
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHh-cc--------------cc-----CCCC----ChhchH-HHHHHHHHHHhh-cCh
Q 005817 486 AKLCSGKLSDSVQLWLLRISVEIRC-VT--------------RN-----SFSP----SKADIL-SIFELLKCILTK-VSA 539 (676)
Q Consensus 486 ~~al~~~~P~~~~lW~~~i~l~~~~-~~--------------~~-----~~~p----~~~~~~-~~~~~f~~Al~~-~~~ 539 (676)
...+ ..+|++..-+..+....-.. +. .. .+.| ++.++. .+.+.+..-+++ +|+
T Consensus 243 ~~Ll-~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 243 RRLL-ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHH-hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 9988 78888765554444333100 00 00 0001 110111 111122222222 221
Q ss_pred hhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhC-------CCCCCCcc--hHHHH--HHHHHHhcCHHHHHHHHHH
Q 005817 540 LESESLWLMALKFFMN--QKHYFDKLVEIALISVAKD-------GGGESGFS--LPSAI--INLVIQKDGIQQAREMYKR 606 (676)
Q Consensus 540 ~~~~~lW~~~l~~~~~--~~~~~~~~~~~a~~~~~~~-------~~~~~~~~--~~~~y--~~~~~~~g~~~~Ar~iy~~ 606 (676)
- ...+ ...+.. ....++++.......+.++ .+.+..|. ++..| ++-.-..|+++.|......
T Consensus 322 v-f~dl----~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 322 V-FKDL----RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred h-hhhh----HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 1 0011 011111 1122333333322222221 11111121 11111 1223347899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817 607 FLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651 (676)
Q Consensus 607 al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~ 651 (676)
||...|.-+.+|+.-+.+-.-.| +++.|-.+++.|-+..
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G------~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAG------LLDEAAAWLDEAQELD 435 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHhcc
Confidence 99988888888877777766666 7788888888887763
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.66 E-value=0.00016 Score=71.91 Aligned_cols=311 Identities=14% Similarity=0.037 Sum_probs=215.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
..-|..-|..|+.-+|+++....+-+......| ...+..-+++.|.+-|+-...-+.-+...+ .+|.++.|..-|+..
T Consensus 54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll-K~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL-KQGELEQAEADFDQV 132 (504)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh-hcccHHHHHHHHHHH
Confidence 455788999999999999888887777777777 456788899999999998888888888887 789999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
|+..|.+...-..+-++++..-.... |..+.
T Consensus 133 l~~~~s~~~~~eaqskl~~~~e~~~l-~~ql~------------------------------------------------ 163 (504)
T KOG0624|consen 133 LQHEPSNGLVLEAQSKLALIQEHWVL-VQQLK------------------------------------------------ 163 (504)
T ss_pred HhcCCCcchhHHHHHHHHhHHHHHHH-HHHHH------------------------------------------------
Confidence 99999765555555555443211110 00000
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcccc
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~ 378 (676)
..+..++...|.......++..|-+..++..-.+.|..- +....+.+-+..+.+.-.++.+..+..+++++.
T Consensus 164 ---s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~---~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-- 235 (504)
T KOG0624|consen 164 ---SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE---GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-- 235 (504)
T ss_pred ---HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc---CcHHHHHHHHHHHHhccccchHHHHHHHHHHHh--
Confidence 001113566778888888888887777765544444332 345566777777777777888888888888775
Q ss_pred CCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH--HHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (676)
Q Consensus 379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al 455 (676)
.++.+.+.....++|+..|..+ -+..|-++-. ..+. +... ...++....+.+.+++.+
T Consensus 236 -----------vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le-s~e~-------~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 236 -----------VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE-SAEQ-------AIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -----------hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH-HHHH-------HHhhhhHHHHHHHHHHHH
Confidence 4677888888889999888766 3334432211 1110 0000 012356788899999999
Q ss_pred HcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHH
Q 005817 456 AMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (676)
Q Consensus 456 ~~~p~~~~----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~ 531 (676)
..+|..+. ............+++-+|+..+.+++ ...|+++.+...++..+.-.+ ..+.+..-|+
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE----------~YD~AI~dye 365 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDE----------MYDDAIHDYE 365 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhH----------HHHHHHHHHH
Confidence 98887433 23334445566788999999999999 889999999999988776433 4677777788
Q ss_pred HHHhhcC
Q 005817 532 CILTKVS 538 (676)
Q Consensus 532 ~Al~~~~ 538 (676)
+|+...+
T Consensus 366 ~A~e~n~ 372 (504)
T KOG0624|consen 366 KALELNE 372 (504)
T ss_pred HHHhcCc
Confidence 8876543
No 76
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.5e-06 Score=91.79 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCC--CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817 348 MHDKILSDMQRDFL--VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (676)
Q Consensus 348 ~a~~il~~~~~~~p--~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~ 424 (676)
.....+-.+....| .++++...++-++.. .+.+++|++.|+.||+..|++. +|..+=...-.
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-------------s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-- 476 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNL-------------SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-- 476 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-------------chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC--
Confidence 34455566666777 578888888877754 4789999999999999999876 99876432221
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
....+.|+..|.+|++..|.....+...+--.+..|.+++|.+.+-.||
T Consensus 477 ----------------~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 477 ----------------GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ----------------CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 1345799999999999999998889888888889999999998888887
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=6.2e-05 Score=76.45 Aligned_cols=295 Identities=12% Similarity=0.023 Sum_probs=190.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817 144 LEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 144 ~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~ 222 (676)
..++-.-.+.+|.++.|-...++.+-..| +..+.-.|+++...+|.....--.|+.+.- ..|+.+....+..+.+...
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhh
Confidence 45666667788888888888888877766 567888888888888887777777777663 5678888888888877766
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhh
Q 005817 223 PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVD 302 (676)
Q Consensus 223 p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (676)
.....-|.--+.. .+-.+...| .|..+.+...-+++. + ..+..+..
T Consensus 297 ~~ta~~wfV~~~~--l~~~K~~~r--AL~~~eK~I~~~~r~-------------------------~-----~alilKG~ 342 (564)
T KOG1174|consen 297 KYTASHWFVHAQL--LYDEKKFER--ALNFVEKCIDSEPRN-------------------------H-----EALILKGR 342 (564)
T ss_pred hcchhhhhhhhhh--hhhhhhHHH--HHHHHHHHhccCccc-------------------------c-----hHHHhccH
Confidence 4444444433321 111111111 111111111111100 0 00112222
Q ss_pred hHH-HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH-HHhccccCC
Q 005817 303 LFR-EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVS 380 (676)
Q Consensus 303 ~~~-~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la-~~~~~~~~~ 380 (676)
++. .+..+.|..-|+.|...-|...+.+.-++..|-.|. ....+...-+...+.+|++..+...++ ...+..
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~---~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d--- 416 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK---RFKEANALANWTIRLFQNSARSLTLFGTLVLFPD--- 416 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---
Confidence 222 245678889999999988888888888877776654 345566666777888899888766553 333321
Q ss_pred CCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC
Q 005817 381 KDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC 459 (676)
Q Consensus 381 ~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p 459 (676)
..--++|...|+++|+..|.-. -...-+.++.. +|..+.+..++++++...|
T Consensus 417 ---------p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~------------------Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 417 ---------PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV------------------EGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred ---------chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh------------------hCccchHHHHHHHHHhhcc
Confidence 2234889999999999888521 11112222221 3566788999999998744
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 460 LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 460 ~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
+..+....++++...+.+++|...|..|+ ...|++..-..-.=.++.
T Consensus 470 -D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-r~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 470 -DVNLHNHLGDIMRAQNEPQKAMEYYYKAL-RQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred -ccHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCccchHHHHHHHHHHh
Confidence 56889999999999999999999999999 899998765544333443
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=0.0013 Score=65.15 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=136.5
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLM 421 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~ 421 (676)
..+.|+.++..++..---.+.+...+..+|.. .+..++|+++-++-++..+.. .+-..|..+..
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~-------------treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA-------------TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 34556666665554322223333344444432 367888998888877765532 36667776665
Q ss_pred HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-HHH
Q 005817 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-QLW 500 (676)
Q Consensus 422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-~lW 500 (676)
.... .++.++|+..+++|++.+|++...=+..++++...|+++.|.+.+++++ +++|... .+-
T Consensus 189 ~~~~---------------~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~-eQn~~yl~evl 252 (389)
T COG2956 189 QALA---------------SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL-EQNPEYLSEVL 252 (389)
T ss_pred HHhh---------------hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH-HhChHHHHHHH
Confidence 5331 3568899999999999999999989999999999999999999999999 7777532 222
Q ss_pred HHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCC
Q 005817 501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESG 580 (676)
Q Consensus 501 ~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 580 (676)
-.....+...|. +++ |.. ++.+ +.. ..+.
T Consensus 253 ~~L~~~Y~~lg~----------~~~--------------------~~~---fL~~-----------~~~-~~~g------ 281 (389)
T COG2956 253 EMLYECYAQLGK----------PAE--------------------GLN---FLRR-----------AME-TNTG------ 281 (389)
T ss_pred HHHHHHHHHhCC----------HHH--------------------HHH---HHHH-----------HHH-ccCC------
Confidence 111112222221 111 111 1111 110 1111
Q ss_pred cchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCC-CccchHHHHHHHHHHHhhCC
Q 005817 581 FSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVG-DKDSLVNARKLFESALATYD 652 (676)
Q Consensus 581 ~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~-~~~~~~~aR~lye~al~~~~ 652 (676)
.+...+..+......+.+.|.....+-+.- .|+...+..+++++..-.+.| .+.+..-.|++-..-+...|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence 233335566666777888888877766654 455666777777766544332 23466667777666666554
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=1e-05 Score=91.66 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=126.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE 430 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d 430 (676)
-+....+++|++.++...+|..... .++++.|..+++.+++..|... .+..|+..+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~-------------~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------- 132 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEA-------------AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------- 132 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHH-------------cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--------
Confidence 3456678899999999999999865 5789999999999999999765 66666665554
Q ss_pred ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817 431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (676)
Q Consensus 431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (676)
.+.+++|+..+++++..+|.+++.....+..+.+.|.+++|..+|++++ ..+|++...|..++......
T Consensus 133 ----------~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~-~~~p~~~~~~~~~a~~l~~~ 201 (694)
T PRK15179 133 ----------QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS-RQHPEFENGYVGWAQSLTRR 201 (694)
T ss_pred ----------hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999999999999999999999999 79999999999999999888
Q ss_pred ccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 511 VTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 511 ~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
|. .+++...|++|+...
T Consensus 202 G~----------~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 202 GA----------LWRARDVLQAGLDAI 218 (694)
T ss_pred CC----------HHHHHHHHHHHHHhh
Confidence 74 789999999999864
No 80
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=9.3e-05 Score=76.42 Aligned_cols=193 Identities=12% Similarity=0.052 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC--HHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALM 215 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~--~~~Ar~~~ 215 (676)
..+|..++..++..+|.+...|......+...+ ...+...+++++..+|.+..+|..-.-.. +..|. ...+..++
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l-~~l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA-EKLGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH-HHcCchhhHHHHHHH
Confidence 468999999999999999999998877777666 36788999999999999999998765443 34444 36789999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcch
Q 005817 216 QNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (676)
Q Consensus 216 ~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (676)
++++..+|.+..+|..-.......
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l-------------------------------------------------------- 155 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTL-------------------------------------------------------- 155 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHh--------------------------------------------------------
Confidence 999999999999998765432221
Q ss_pred hhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcc-cC---cHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005817 296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNL-AQ---SDDMHDKILSDMQRDFLVDPKYWDWLA 371 (676)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~-~~---~~~~a~~il~~~~~~~p~~~~~w~~la 371 (676)
+.++.+...++++|+..|.+...|..-.-++...+. .+ ..+.......+++...|++..+|..+.
T Consensus 156 -----------~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 156 -----------GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred -----------hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 134567888999999999888888765544433211 11 123455566789999999999999888
Q ss_pred HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817 372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS 409 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~ 409 (676)
..+...... ..+...|...+.++++..|.
T Consensus 225 ~ll~~~~~~---------l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 225 GLFKDDKEA---------LVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHhcCCcc---------cccchhHHHHHHHhhcccCC
Confidence 776431100 12334577777777765444
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.48 E-value=2.7e-05 Score=73.47 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=137.8
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~ 377 (676)
......|..+++..|+.-+++|++..|++...|.....+|...+ ..+.+.+-|++++...|+++.+...++-..-.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G---e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~- 115 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG---ENDLADESYRKALSLAPNNGDVLNNYGAFLCA- 115 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC---ChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-
Confidence 33445556678999999999999999999888877766665543 45789999999999999999998888766544
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~ 457 (676)
+++++.|.+.|++|+..-.-......|.+.-.- ....|....|+..|++++..
T Consensus 116 ------------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C---------------al~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 116 ------------QGRPEEAMQQFERALADPAYGEPSDTLENLGLC---------------ALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ------------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH---------------HhhcCCchhHHHHHHHHHHh
Confidence 468999999999999752111111112111110 11257789999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-ChHHHHHHHHHHHHHhcc
Q 005817 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS-DSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 458 ~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P-~~~~lW~~~i~l~~~~~~ 512 (676)
+|..+......+.++...|++-.|+..+++-. ...+ .-..||+. |.++...|+
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~-~~~~~~A~sL~L~-iriak~~gd 222 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQ-QRGGAQAESLLLG-IRIAKRLGD 222 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHH-hcccccHHHHHHH-HHHHHHhcc
Confidence 99999999999999999999999999999988 5444 44566665 677777664
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00044 Score=70.48 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=183.6
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
|+.+.|.-+|+++.-..|....---.| .++- ...+..+....+..++.........-|+.-+...+.
T Consensus 246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Y-a~LL--~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~---------- 312 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCANPDNVEAMDLY-AVLL--GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD---------- 312 (564)
T ss_pred cCchHHHHHHHHHhhCChhhhhhHHHH-HHHH--HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh----------
Confidence 455677888888888777654322111 1111 112346677777888777666666678777766654
Q ss_pred CcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.+++++|...-+++++..|.+. ..|+- ..... ...+..+.|.-.|..|...-|..-+.|.
T Consensus 313 ---~K~~~rAL~~~eK~I~~~~r~~--~alil--KG~lL-------------~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~ 372 (564)
T KOG1174|consen 313 ---EKKFERALNFVEKCIDSEPRNH--EALIL--KGRLL-------------IALERHTQAVIAFRTAQMLAPYRLEIYR 372 (564)
T ss_pred ---hhhHHHHHHHHHHHhccCcccc--hHHHh--ccHHH-------------HhccchHHHHHHHHHHHhcchhhHHHHH
Confidence 4678899999999998766432 11210 00000 0135678899999999999899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHH
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLW 546 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW 546 (676)
..+.-++..|.+.+|..+...+. +.+|.|..-......... . .+| ..-+++.+.++++|+.-|.....-+-
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~-~~~~~sA~~LtL~g~~V~-~-----~dp--~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTI-RLFQNSARSLTLFGTLVL-F-----PDP--RMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHH-HHhhcchhhhhhhcceee-c-----cCc--hhHHHHHHHHHhhhccCCccHHHHHH
Confidence 99999999999999999999999 788888765544321110 0 011 13477888999999876643211111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005817 547 LMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELEN 626 (676)
Q Consensus 547 ~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~ 626 (676)
..=+-..+...+..-+++++++... ++. .+-....++....+.+.+|..-|..|+++.|.+..-...+-.||.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~------~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIF-PDV------NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhc-ccc------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 1101112333355666777776533 332 455567888888899999999999999999999998888888997
Q ss_pred hccCC
Q 005817 627 NLASV 631 (676)
Q Consensus 627 ~~~~~ 631 (676)
....+
T Consensus 517 ~~~~~ 521 (564)
T KOG1174|consen 517 SDDES 521 (564)
T ss_pred ccCCC
Confidence 76543
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.47 E-value=0.0019 Score=71.02 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARAL 214 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~ 214 (676)
+-+..+...||+++.---+....|..+.--....| ...+..+.+.++... |.++...+++++.+.+..+.++.+..+
T Consensus 337 g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldY 416 (799)
T KOG4162|consen 337 GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDY 416 (799)
T ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHH
Confidence 34556677888888777777889988876655556 468899999999999 888999999999999888899999999
Q ss_pred HHHHHHhC
Q 005817 215 MQNGLRVC 222 (676)
Q Consensus 215 ~~ral~~~ 222 (676)
-++++..+
T Consensus 417 A~kai~~~ 424 (799)
T KOG4162|consen 417 AQKAISLL 424 (799)
T ss_pred HHHHHHHh
Confidence 99998755
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.44 E-value=5.3e-06 Score=75.47 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
.++++.|...|++++...|... .|......... .|.++.|...|++++..+|.++..|...
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~------------------~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM------------------LKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4789999999999999888654 45443333332 4789999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
+..+...|++++|+..+++++ ...|+++..|..+.....
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al-~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAI-KMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHH
Confidence 999999999999999999999 899999999977665443
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=7e-06 Score=78.93 Aligned_cols=98 Identities=9% Similarity=0.055 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC--HHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN--VTAARALM 215 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~--~~~Ar~~~ 215 (676)
....+...+++++...|++.+.|...+..+...| ++.+...|++++.+.|+++.+|..++...+...|+ ...|+.++
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3467778899999999999999999999998887 58899999999999999999999999854235566 59999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q 005817 216 QNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 216 ~ral~~~p~~~~lW~~y~~~e 236 (676)
+++++.+|++..++...+...
T Consensus 134 ~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 134 DKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHH
Confidence 999999999987776665443
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.43 E-value=0.0051 Score=66.48 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
.+.|...-.++++-.+.|.--|-.|.=+.+..+ ++.+.+.|.+|+...|++.++|..++.+.. +.++++.....=.+-
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQL 135 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHH
Confidence 456778888999999999999999988876655 688999999999999999999999999886 778999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRME 236 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e 236 (676)
++..|....-|+.++.-.
T Consensus 136 Lql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HHhhhhhHHHHHHHHHHH
Confidence 999999889999988643
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.7e-05 Score=83.87 Aligned_cols=211 Identities=11% Similarity=0.012 Sum_probs=137.1
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
+.....++..|++..|.-.|+.||+..|.+.+.|..+-- ...+. ..+..+...+.+|++..|++-++...+|-.+..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~--~qaEN-E~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGI--TQAEN-ENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhh--Hhhhc-cchHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 556667777888999999999999999999999975422 22332 145678889999999999999988888876653
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---------------------h----HHHHHHHHHHHHhcCccccc
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---------------------M----IFDLYTKFLMDMIAPKKEET 431 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---------------------~----lw~~y~~~~~~~~~~~~~d~ 431 (676)
. +.-..|...+.+=|...|.. . +-..|+....+.- ...|.
T Consensus 366 e-------------g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~Dp 430 (579)
T KOG1125|consen 366 E-------------GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDP 430 (579)
T ss_pred h-------------hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCCh
Confidence 2 12223444443333322110 0 1111111111100 00122
Q ss_pred cCC---CCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 432 RDS---ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 432 ~~~---~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
.+. +|++...+.+++|..-|+.|+...|.+..+|-.++..+...++.++|+..|.+|+ +.-|..++.|...+--.+
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-qLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-QLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-hcCCCeeeeehhhhhhhh
Confidence 221 2233445678888888888888888888888888888877777888888888888 788888777776655555
Q ss_pred HhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 509 RCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
..| ...++.+.|-.||..
T Consensus 510 NlG----------~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 510 NLG----------AYKEAVKHLLEALSM 527 (579)
T ss_pred hhh----------hHHHHHHHHHHHHHh
Confidence 444 367777777777764
No 88
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=0.00025 Score=73.27 Aligned_cols=213 Identities=8% Similarity=0.019 Sum_probs=145.5
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG 251 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~ 251 (676)
..++..+++++++.+|.+..+|..-..... ..| ++..+...++++++.+|.+..+|..-..+-... +
T Consensus 53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l-----------~ 120 (320)
T PLN02789 53 SPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL-----------G 120 (320)
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc-----------C
Confidence 578999999999999999999998877764 444 689999999999999999999997654332110 0
Q ss_pred cccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH
Q 005817 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ 331 (676)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~ 331 (676)
. ...+.+...++++++..|.+...|.
T Consensus 121 ~------------------------------------------------------~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 121 P------------------------------------------------------DAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred c------------------------------------------------------hhhHHHHHHHHHHHHhCcccHHHHH
Confidence 0 0113457788899999999998887
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817 332 RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411 (676)
Q Consensus 332 ~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~ 411 (676)
.---++..++ ..+.+...++++++.+|.+..+|...+........ .. ......+.+.+...++|...|.+.
T Consensus 147 ~R~w~l~~l~---~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~-l~-----~~~~~~e~el~y~~~aI~~~P~N~ 217 (320)
T PLN02789 147 HRQWVLRTLG---GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL-LG-----GLEAMRDSELKYTIDAILANPRNE 217 (320)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc-cc-----cccccHHHHHHHHHHHHHhCCCCc
Confidence 6555555543 46778889999999999999999887755321100 00 001124567778889999999765
Q ss_pred -HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 005817 412 -IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ 474 (676)
Q Consensus 412 -lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~ 474 (676)
.|...- ........ . .+....+...+.+++..+|.++-..-..++++..
T Consensus 218 SaW~Yl~-~ll~~~~~-~------------l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 218 SPWRYLR-GLFKDDKE-A------------LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred CHHHHHH-HHHhcCCc-c------------cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 775443 33321100 0 1223457777888888778776555555555543
No 89
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.0027 Score=63.01 Aligned_cols=265 Identities=13% Similarity=0.082 Sum_probs=154.2
Q ss_pred HHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817 164 YMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 243 (676)
Q Consensus 164 y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~ 243 (676)
=++|+.+..++++..+|-.+++..|...++-+..+.+. ...|.++.|.++=+-.+. -|+-.--=...+.+++
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL------ 113 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQL------ 113 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHH------
Confidence 34555555566777777777777777777777666665 456677766665444333 2331100000000000
Q ss_pred HHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC
Q 005817 244 KARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL 323 (676)
Q Consensus 244 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~ 323 (676)
+ ......|-+++|..+|...++..
T Consensus 114 -------~-------------------------------------------------~Dym~aGl~DRAE~~f~~L~de~ 137 (389)
T COG2956 114 -------G-------------------------------------------------RDYMAAGLLDRAEDIFNQLVDEG 137 (389)
T ss_pred -------H-------------------------------------------------HHHHHhhhhhHHHHHHHHHhcch
Confidence 0 00111234577777777666532
Q ss_pred CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHHhccccCCCCCCCcCcchhHHHHHHH
Q 005817 324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398 (676)
Q Consensus 324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~ 398 (676)
---......++.+|..- ..++.|..+-+++++.-|+... .+..+|+.... .++.++|+.
T Consensus 138 efa~~AlqqLl~IYQ~t---reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-------------~~~~d~A~~ 201 (389)
T COG2956 138 EFAEGALQQLLNIYQAT---REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-------------SSDVDRARE 201 (389)
T ss_pred hhhHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-------------hhhHHHHHH
Confidence 22224445555665432 2356677777777777666522 34455555543 467889999
Q ss_pred HHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcC
Q 005817 399 VYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRYVTLYLQLG 476 (676)
Q Consensus 399 ~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~~~l~~~~~ 476 (676)
.+++|++..|+.. .-..--+.+. .+|++++|.+.+++.++.+|.. +++--.....+...|
T Consensus 202 ~l~kAlqa~~~cvRAsi~lG~v~~------------------~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 202 LLKKALQADKKCVRASIILGRVEL------------------AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHHhhCccceehhhhhhHHHH------------------hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 9999999888642 1110111111 2478999999999999998874 556666677777889
Q ss_pred CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 477 KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 477 ~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
+.++.+..+.++. ..+|...-.-..+=..+...| .+.+.....+-++.-|
T Consensus 264 ~~~~~~~fL~~~~-~~~~g~~~~l~l~~lie~~~G-----------~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 264 KPAEGLNFLRRAM-ETNTGADAELMLADLIELQEG-----------IDAAQAYLTRQLRRKP 313 (389)
T ss_pred CHHHHHHHHHHHH-HccCCccHHHHHHHHHHHhhC-----------hHHHHHHHHHHHhhCC
Confidence 9999999999998 777764333222211222223 3556666666666655
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=0.001 Score=70.54 Aligned_cols=155 Identities=11% Similarity=0.019 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
+++.|..+++++++..|++...+..-+..+......+....+...+......+|........++..+..
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~----------- 126 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEE----------- 126 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHH-----------
Confidence 556677778888877777653332100001111111123344444544334455555555555655544
Q ss_pred cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH----
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE---- 462 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~---- 462 (676)
.++++.|...++++++..|... .+......... .|.++.+...+++++...|.++
T Consensus 127 --~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~------------------~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 127 --AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM------------------QGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred --cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH------------------cCCHHHHHHHHHhhhhccCCCcchhH
Confidence 5778999999999999888754 33333333322 3678999999999998766433
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P 494 (676)
..|...+.++...|++++|..++++++ ...|
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~-~~~~ 217 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHI-APSA 217 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh-cccc
Confidence 357788999999999999999999988 5545
No 91
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.00016 Score=82.88 Aligned_cols=270 Identities=10% Similarity=0.059 Sum_probs=159.5
Q ss_pred CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (676)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~ 402 (676)
.|.+.+.|..++..+... +..+.+..+++..++.+|+...+|...|-+++.. ++.+.+..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~---~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-------------~~~~~~~lv--~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSE---NLTDEAKDICEEHLKEHKKSISALYISGILSLSR-------------RPLNDSNLL--N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-------------cchhhhhhh--h
Confidence 467778888888777443 3567889999999999999999999888876552 344444444 4
Q ss_pred HhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817 403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (676)
Q Consensus 403 al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~ 482 (676)
++...+...-| .+.+.|-.++...+.+.......+..+.+.|+.++|.
T Consensus 89 ~l~~~~~~~~~--------------------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 89 LIDSFSQNLKW--------------------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred hhhhcccccch--------------------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHH
Confidence 44444433222 1222222223333444556666777777777777777
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhhhH
Q 005817 483 KLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS----ALESESLWLMALKFFMNQKH 558 (676)
Q Consensus 483 ~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~----~~~~~~lW~~~l~~~~~~~~ 558 (676)
.+|++++ +..|+++.+...++..+... +++++.+++.+|+...- ......+|..++.+-....+
T Consensus 137 ~~yer~L-~~D~~n~~aLNn~AY~~ae~-----------dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 137 GVWERLV-KADRDNPEIVKKLATSYEEE-----------DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred HHHHHHH-hcCcccHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccch
Confidence 7777777 67777777777777665543 26777777777776421 12245677765543222223
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchH
Q 005817 559 YFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLV 638 (676)
Q Consensus 559 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~ 638 (676)
.+..+.++......-.. ...+...........++++++..+++.++...|.+.......+..... .+.
T Consensus 205 ~f~~i~~ki~~~~~~~~----~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~--------kY~ 272 (906)
T PRK14720 205 FFLRIERKVLGHREFTR----LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE--------KYK 272 (906)
T ss_pred HHHHHHHHHHhhhccch----hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH--------Hcc
Confidence 44444443322211000 011111222335567789999999999999888876655554443321 111
Q ss_pred HHHHHHHHHHhhCC--CC-chHHHHHHHHHhh
Q 005817 639 NARKLFESALATYD--QN-TSLWRDYYSTETK 667 (676)
Q Consensus 639 ~aR~lye~al~~~~--~~-~~lW~~y~~fE~~ 667 (676)
. ...|+.++...+ ++ ..+-..+.+||..
T Consensus 273 ~-~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 273 D-HSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred C-cchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 2 556667777665 33 3666667777765
No 92
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.00044 Score=70.91 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
.+++++|.+.|.+||....+ ..++..-+.. ...|+++.|...|-+.+..-..+.++...
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~-------------------e~~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTA-------------------EALGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-------------------HHhcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57899999999999975432 1133211111 12578899999888877765667899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHH
Q 005817 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL 547 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~ 547 (676)
.+.++....+..+|+.++.++. ...|+++.+....+.++-+.|+ -.++.+.+-...+-+|.+--.-=|.
T Consensus 564 ianiye~led~aqaie~~~q~~-slip~dp~ilskl~dlydqegd----------ksqafq~~ydsyryfp~nie~iewl 632 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQAN-SLIPNDPAILSKLADLYDQEGD----------KSQAFQCHYDSYRYFPCNIETIEWL 632 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhhcccc----------hhhhhhhhhhcccccCcchHHHHHH
Confidence 9999999999999999999999 8899999999999999987763 4556555555555566543222365
Q ss_pred HHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817 548 MALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE 625 (676)
Q Consensus 548 ~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE 625 (676)
. .||..-+ +.....|++|.. +.|.. ..|..+.+....+.|++.+|..+|...-+-.|.+..-....+.+-
T Consensus 633 ~--ayyidtqf~ekai~y~ekaal-iqp~~-----~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~ 704 (840)
T KOG2003|consen 633 A--AYYIDTQFSEKAINYFEKAAL-IQPNQ-----SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA 704 (840)
T ss_pred H--HHHHhhHHHHHHHHHHHHHHh-cCccH-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence 3 1221111 111222344332 34443 478766778888999999999999998888888876555555554
Q ss_pred hhc
Q 005817 626 NNL 628 (676)
Q Consensus 626 ~~~ 628 (676)
..+
T Consensus 705 ~dl 707 (840)
T KOG2003|consen 705 GDL 707 (840)
T ss_pred ccc
Confidence 333
No 93
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=1.3e-05 Score=72.85 Aligned_cols=89 Identities=11% Similarity=-0.113 Sum_probs=73.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817 144 LEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 144 ~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~ 222 (676)
..+|++++...|++ |...+......| +..+...|.+++...|.++..|...+.... ..|+++.|...|++++..+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcC
Confidence 47899999999975 445555555556 577899999999999999999999998875 6889999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 005817 223 PTSEELWVEYLRME 236 (676)
Q Consensus 223 p~~~~lW~~y~~~e 236 (676)
|+++..|...+...
T Consensus 89 p~~~~a~~~lg~~l 102 (144)
T PRK15359 89 ASHPEPVYQTGVCL 102 (144)
T ss_pred CCCcHHHHHHHHHH
Confidence 99988888777643
No 94
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.30 E-value=2.9e-05 Score=80.69 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=125.4
Q ss_pred HHHHHHhhccCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Q 005817 398 QVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG 476 (676)
Q Consensus 398 ~~ye~al~~~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~ 476 (676)
.-|++.++..|.+ ..|..|+.+........... ........++...+|++|+..+|.++.+++.|+....+..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~------~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS------KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc------hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 4578888888865 49999999988754321100 0012345678899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhh
Q 005817 477 KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQ 556 (676)
Q Consensus 477 ~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~ 556 (676)
+.++..+.+++++ ..+|++..||..|+++...... + -.+..++++|.+||+.+....... ....
T Consensus 80 ~~~~l~~~we~~l-~~~~~~~~LW~~yL~~~q~~~~------~-f~v~~~~~~y~~~l~~L~~~~~~~--------~~~~ 143 (321)
T PF08424_consen 80 DSEKLAKKWEELL-FKNPGSPELWREYLDFRQSNFA------S-FTVSDVRDVYEKCLRALSRRRSGR--------MTSH 143 (321)
T ss_pred CHHHHHHHHHHHH-HHCCCChHHHHHHHHHHHHHhc------c-CcHHHHHHHHHHHHHHHHHhhccc--------cccc
Confidence 9999899999999 8899999999999998876321 0 147899999999998654221100 0000
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC
Q 005817 557 KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL 610 (676)
Q Consensus 557 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~ 610 (676)
. ....+-..+ ..++..+..|+.+.|-.+.|..+++-.++.
T Consensus 144 ~-~~~~~e~~~-------------l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 144 P-DLPELEEFM-------------LYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred c-chhhHHHHH-------------HHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 0 000000000 123335778888999999999999998764
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=1.8e-05 Score=76.02 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (676)
Q Consensus 346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~ 424 (676)
.+.+...+.+.++..|++...|..+|..+.. .++++.|...|+++++..|.+. ++..|+.......
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-------------~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~ 121 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW-------------RNDYDNALLAYRQALQLRGENAELYAALATVLYYQA 121 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 3456667888999999999999999999876 5789999999999999988654 7766665332110
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
+ +...+.|+.++++++..+|.++..+...+..+.+.|++++|...+++++ +..|.
T Consensus 122 ---g------------~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL-~l~~~ 176 (198)
T PRK10370 122 ---G------------QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL-DLNSP 176 (198)
T ss_pred ---C------------CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence 0 1125899999999999999999999999999999999999999999999 65554
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00039 Score=66.62 Aligned_cols=156 Identities=14% Similarity=0.075 Sum_probs=123.7
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM 423 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~ 423 (676)
....|...++++...||.++.+-...|.+.- ..+..+.|.++|+..|...|++. +...=+....
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE-------------a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-- 131 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSKRVGKLKAMLLE-------------ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-- 131 (289)
T ss_pred chHHHHHHHHHHHHhCCCChhHHHHHHHHHH-------------HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH--
Confidence 4568999999999999999988777776552 25789999999999999999865 2221111111
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (676)
.+|..-.|+..+..-++..+.+.+.|...++++...|.+++|.-.+++.+ =..|.++....++
T Consensus 132 ----------------a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-l~~P~n~l~f~rl 194 (289)
T KOG3060|consen 132 ----------------AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-LIQPFNPLYFQRL 194 (289)
T ss_pred ----------------HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-HcCCCcHHHHHHH
Confidence 13444567777777888899999999999999999999999999999999 7899999999999
Q ss_pred HHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 504 i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
+++.-..|. -.+++.+++.|.+|++..|.
T Consensus 195 ae~~Yt~gg-------~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 195 AEVLYTQGG-------AENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHhh-------HHHHHHHHHHHHHHHHhChH
Confidence 987765442 12678899999999998773
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.24 E-value=0.0001 Score=73.23 Aligned_cols=182 Identities=16% Similarity=0.060 Sum_probs=119.5
Q ss_pred HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh---hHHHHHHHhccccCCC
Q 005817 305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKMTDSVSK 381 (676)
Q Consensus 305 ~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~---~w~~la~~~~~~~~~~ 381 (676)
..++++.|...|++++...|++......++.....+...+..+.+...++++++.+|+++. +|..++..+......
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~- 123 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR- 123 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc-
Confidence 4568899999999999999987543333333333333334688999999999999999876 577777666432100
Q ss_pred CCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH--HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC
Q 005817 382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG 458 (676)
Q Consensus 382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~ 458 (676)
.....++.+.|...|++++...|... .+..+..... ......... + +-.....|++..|...|++++...
T Consensus 124 ----~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~--~-a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 124 ----VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELY--V-ARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred ----ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHcCChHHHHHHHHHHHHHC
Confidence 00114678999999999999888654 3322211100 000000000 0 000012477899999999999886
Q ss_pred CCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 459 CLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 459 p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
|.+ ++.|...+..+...|++++|...++.+. ..+|.
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~-~~~~~ 235 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG-ANYPD 235 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence 654 5789999999999999999999888877 66663
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=3.2e-05 Score=69.40 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (676)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p 223 (676)
..|++++...|.+...-..++......+ ...+...|++++..+|.++.+|...+.... ..|+++.|..+|++++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC
Confidence 4688999999999888777888777766 578899999999999999999999999886 57899999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005817 224 TSEELWVEYLRME 236 (676)
Q Consensus 224 ~~~~lW~~y~~~e 236 (676)
++..+|...+.+.
T Consensus 83 ~~~~~~~~la~~~ 95 (135)
T TIGR02552 83 DDPRPYFHAAECL 95 (135)
T ss_pred CChHHHHHHHHHH
Confidence 9888887666543
No 99
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=98.21 E-value=1.9e-05 Score=69.50 Aligned_cols=111 Identities=19% Similarity=0.334 Sum_probs=85.0
Q ss_pred HHhhHHhHHHhhCCC---CChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHH
Q 005817 75 VKQRRKFEYRLKRPS---PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV 151 (676)
Q Consensus 75 ~~~R~~fE~~l~~~~---~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral 151 (676)
-++|..||..|..-. ..+..|++||+|-.... +. .....+...+++|++
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~------------------------p~----~~~~~~L~~lLer~~ 53 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENY------------------------PS----GGKQSGLLELLERCI 53 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHC------------------------TT----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHC------------------------CC----CCchhHHHHHHHHHH
Confidence 468999999999865 55788999999965421 10 112456678999999
Q ss_pred HhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817 152 MRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (676)
Q Consensus 152 ~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral 219 (676)
+.|+++ +.+|+.|++++ .....+|..+... .-..+.+|+.+|.+. +..|++..|..+|++||
T Consensus 54 ~~f~~~~~Y~nD~RylkiWi~ya~~~-----~~~~~if~~l~~~~IG~~~A~fY~~wA~~l-e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 54 RKFKDDERYKNDERYLKIWIKYADLS-----SDPREIFKFLYSKGIGTKLALFYEEWAEFL-EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHTTSGGGTT-HHHHHHHHHHHTTB-----SHHHHHHHHHHHHTTSTTBHHHHHHHHHHH-HHTT-HHHHHHHHHHHH
T ss_pred HHHhhhHhhcCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHcCccHHHHHHHHHHHHHH-HHcCCHHHHHHHHHhhC
Confidence 999876 36888888764 3678888888774 345789999999998 58899999999999996
No 100
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.00014 Score=71.76 Aligned_cols=224 Identities=11% Similarity=0.093 Sum_probs=163.7
Q ss_pred Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817 170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248 (676)
Q Consensus 170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~ 248 (676)
..| ..++.+.|+.+|...|. ++.++...+... .......|..+|..++...|.+...-...+++....
T Consensus 235 rLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam--------- 303 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM--------- 303 (478)
T ss_pred HhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH---------
Confidence 346 47889999999999985 777888888774 566889999999999999998766655555543321
Q ss_pred HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817 249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN 328 (676)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~ 328 (676)
++.+.|..+|+.+++..|.+++
T Consensus 304 ----------------------------------------------------------~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 304 ----------------------------------------------------------EQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred ----------------------------------------------------------HhHHHHHHHHHHHHhcCCccce
Confidence 1345677888888888887754
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817 329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (676)
Q Consensus 329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~ 408 (676)
...-. ...+-..++++.+...|.+++..--.+|++...++--.+- -++++-+..-|++|+....
T Consensus 326 aiAci---a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-------------aqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 326 AIACI---AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-------------AQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred eeeee---eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-------------hcchhhhHHHHHHHHhhcc
Confidence 32110 0011122467888888888888888888888777766553 3578889999999987643
Q ss_pred c--h--hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005817 409 S--S--MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL 484 (676)
Q Consensus 409 ~--~--~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l 484 (676)
. . .+|-. ...... .-|+..-|..-|.-|+..++.+.+.+...+-+..+.|+++.|+.+
T Consensus 390 ~~~~aaDvWYN-----lg~vaV-------------~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 390 QPGQAADVWYN-----LGFVAV-------------TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred Ccchhhhhhhc-----cceeEE-------------eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 2 2 26621 111110 126688888899999999999999999999999999999999999
Q ss_pred HHHHhhccCCChH
Q 005817 485 AAKLCSGKLSDSV 497 (676)
Q Consensus 485 ~~~al~~~~P~~~ 497 (676)
+..|. ...|+..
T Consensus 452 l~~A~-s~~P~m~ 463 (478)
T KOG1129|consen 452 LNAAK-SVMPDMA 463 (478)
T ss_pred HHHhh-hhCcccc
Confidence 99998 7788743
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.19 E-value=0.0038 Score=68.58 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=94.4
Q ss_pred CCcHHHHHHH--HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 459 CLTEDIAHRY--VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 459 p~~~~lw~~~--~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
|.+.-+|..| ++.+...|++++|+...++|+ ...|+.++++...+.++.+.|+ +.++.+.++.|-..
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~htPt~~ely~~KarilKh~G~----------~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EHTPTLVELYMTKARILKHAGD----------LKEAAEAMDEAREL 257 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhC
Confidence 3344578776 888889999999999999999 8999999999999999988875 45443333333211
Q ss_pred cChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCC--CCC
Q 005817 537 VSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALP--RPG 614 (676)
Q Consensus 537 ~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~--p~~ 614 (676)
...+ --+....+.+..+.|.+++|.++.....+.. |.+
T Consensus 258 -----------------------------------D~~D-----RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 258 -----------------------------------DLAD-----RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred -----------------------------------Chhh-----HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 0110 0112245677888999999999988887644 222
Q ss_pred HHHHHHHHHHHhhccCC-CCccchHHHHHHHHHHHhhCC
Q 005817 615 LVLYQNCIELENNLASV-GDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 615 ~~l~~~~i~lE~~~~~~-~~~~~~~~aR~lye~al~~~~ 652 (676)
...=++++.++...|.. ...+++..|.+-|......|.
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22336666665543310 012267777777777777654
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=6.4e-05 Score=67.47 Aligned_cols=118 Identities=12% Similarity=-0.032 Sum_probs=94.1
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE 430 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d 430 (676)
.+++++...|++......++..++. .++++.|...|++++...|... .|.....+...
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------- 63 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQ-------------QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-------- 63 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHH-------------cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------
Confidence 4566777778776666666766654 4778999999999998877654 55444433332
Q ss_pred ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
.++++.|...|++++..+|.+++.|...+..+...|++++|...+++++ +..|++...+.
T Consensus 64 ----------~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 123 (135)
T TIGR02552 64 ----------LKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI-EICGENPEYSE 123 (135)
T ss_pred ----------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhccccchHHH
Confidence 4678999999999999999999999999999999999999999999999 88898766443
No 103
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.16 E-value=0.00042 Score=75.19 Aligned_cols=232 Identities=16% Similarity=0.116 Sum_probs=134.4
Q ss_pred CcHHHHHHHHHHHHhc--------CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC-----ch
Q 005817 344 QSDDMHDKILSDMQRD--------FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-----SS 410 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~--------~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~-----~~ 410 (676)
+..+.+...+..+++. +|.=......+|..+.. .+++.+|..+|++|++... ++
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-------------~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-------------LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666665554 23223333346777654 5788999999999997532 11
Q ss_pred h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817 411 M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTEDIAHRYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 411 ~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p-~~~~lw~~~~~l~~~~~~~~~A~~l~~~a 488 (676)
. .-..+.++-.-.+....-+ ......++|++|+++.....+ .-.......+..+...+.+++|..++.++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~--------EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFA--------EAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHHhccCChH--------HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 1 2222222222122110000 011234455555555222211 12344566677777889999999999988
Q ss_pred hhcc--------CCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc-------ChhhhHHHHHHHHHHH
Q 005817 489 CSGK--------LSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV-------SALESESLWLMALKFF 553 (676)
Q Consensus 489 l~~~--------~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~-------~~~~~~~lW~~~l~~~ 553 (676)
+ +. +|.-..+...++.+....|. ..+++++|++|++.. ......+||.+...+.
T Consensus 352 l-~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk----------~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 352 L-KIYLDAPGEDNVNLAKIYANLAELYLKMGK----------YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred H-HHHHhhccccchHHHHHHHHHHHHHHHhcc----------hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 8 43 22235666667777777664 789999999999863 2233578999877765
Q ss_pred Hhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHHc
Q 005817 554 MNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLA 609 (676)
Q Consensus 554 ~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~ 609 (676)
+... .+...+|..+..+. +..|. ..+.+...| +..+...|+++.|.++-++++.
T Consensus 421 ~~k~~~~a~~l~~~~~~i~-~~~g~-~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIM-KLCGP-DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhcccchHHHHHHHHHHHH-HHhCC-CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4433 45666666665544 33322 123333344 4456678999999999998874
No 104
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=6.9e-05 Score=73.88 Aligned_cols=221 Identities=11% Similarity=-0.009 Sum_probs=149.8
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~ 469 (676)
.+-+.+|...++.+|+..|...-+....+.... -+.+.+|..+|...++..|.+..+.+..+
T Consensus 236 Lgm~r~AekqlqssL~q~~~~dTfllLskvY~r------------------idQP~~AL~~~~~gld~fP~~VT~l~g~A 297 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQR------------------IDQPERALLVIGEGLDSFPFDVTYLLGQA 297 (478)
T ss_pred hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHH------------------hccHHHHHHHHhhhhhcCCchhhhhhhhH
Confidence 355778899999999887755433222222222 14578999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh--cChhh--hHHH
Q 005817 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK--VSALE--SESL 545 (676)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~--~~~~~--~~~l 545 (676)
.+....++.++|.++|+.++ +.+|.+++.-.--+.-+. .+ ++++-+...|.+.|+. .++.- ...|
T Consensus 298 Ri~eam~~~~~a~~lYk~vl-k~~~~nvEaiAcia~~yf-Y~---------~~PE~AlryYRRiLqmG~~speLf~NigL 366 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVL-KLHPINVEAIACIAVGYF-YD---------NNPEMALRYYRRILQMGAQSPELFCNIGL 366 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHH-hcCCccceeeeeeeeccc-cC---------CChHHHHHHHHHHHHhcCCChHHHhhHHH
Confidence 99999999999999999999 888877542211110000 11 2467777788888774 22221 1233
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhh-hCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005817 546 WLMALKFFMNQKHYFDKLVEIALISVA-KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIEL 624 (676)
Q Consensus 546 W~~~l~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~l 624 (676)
-.+|.+.++- .-.-|++|+.... |+. ....|+ .........|++.-|...|.-|+...+....-+....-|
T Consensus 367 CC~yaqQ~D~----~L~sf~RAlstat~~~~---aaDvWY-Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 367 CCLYAQQIDL----VLPSFQRALSTATQPGQ---AADVWY-NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHhhcchhh----hHHHHHHHHhhccCcch---hhhhhh-ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 3344444432 2233444443222 221 112232 222334567999999999999999888888888888889
Q ss_pred HhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817 625 ENNLASVGDKDSLVNARKLFESALATYDQ 653 (676)
Q Consensus 625 E~~~~~~~~~~~~~~aR~lye~al~~~~~ 653 (676)
+...| +++.||.++..|....|.
T Consensus 439 ~~r~G------~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 439 AARSG------DILGARSLLNAAKSVMPD 461 (478)
T ss_pred HhhcC------chHHHHHHHHHhhhhCcc
Confidence 98888 899999999999998884
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.14 E-value=0.00026 Score=70.32 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-------C
Q 005817 140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG---VWIYAAAWEFDH-------N 205 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~---lW~~~a~~e~~~-------~ 205 (676)
...+...|++++..+|++. ..|...+......+ ...+...|++++..+|+++. .|...+...... .
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~ 128 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQ 128 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCH
Confidence 5678899999999999876 46666766666666 57899999999999998776 465555554422 2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCC
Q 005817 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVE 285 (676)
Q Consensus 206 ~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (676)
|+.+.|...|+++++.+|++...|..+..+............ .+
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~-~~----------------------------------- 172 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKEL-YV----------------------------------- 172 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHH-HH-----------------------------------
Confidence 678899999999999999998777666554332211000000 00
Q ss_pred CCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCC
Q 005817 286 NTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLV 362 (676)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~ 362 (676)
..-.+..+++..|...|++++...|+++ +.+..+..++.. .+..+.+...++.+...+|+
T Consensus 173 --------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~---lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 173 --------------ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK---LGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred --------------HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCC
Confidence 0011223578899999999999988754 344444333333 34567888889998888874
No 106
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.001 Score=68.38 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
+++.|...|-+....+-++.++..++..+|...+ ....+...+-++...-|++|.+...++.++-.
T Consensus 539 ~ldeald~f~klh~il~nn~evl~qianiye~le---d~aqaie~~~q~~slip~dp~ilskl~dlydq----------- 604 (840)
T KOG2003|consen 539 NLDEALDCFLKLHAILLNNAEVLVQIANIYELLE---DPAQAIELLMQANSLIPNDPAILSKLADLYDQ----------- 604 (840)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-----------
Confidence 5667777777666666667777777777877665 35678888899999999999999999988843
Q ss_pred cchhHHHHHHHHHHHHhhccCchh---HHH--HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM---IFD--LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE 462 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~---lw~--~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~ 462 (676)
.++-..|-+.+=..-...|.+- -|. .|++ ....++++..|++|-...|...
T Consensus 605 --egdksqafq~~ydsyryfp~nie~iewl~ayyid----------------------tqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 605 --EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------------------TQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred --ccchhhhhhhhhhcccccCcchHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHhcCccHH
Confidence 2344556665555555566432 342 2221 1345789999999988878765
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
..-+.-+..+.+.|++++|..+|...- +.+|.+.+.....+.+.-..|
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~h-rkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIH-RKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH-HhCccchHHHHHHHHHhcccc
Confidence 555556788889999999999999988 899999888777666554333
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.13 E-value=0.0034 Score=66.49 Aligned_cols=293 Identities=10% Similarity=-0.019 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 309 LRVLQTIYSGAVEALPSSFNLRQ-RFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 309 ~~~a~~iy~~Al~~~p~~~~~~~-~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
.+.+...|.++.+..|.+..-+. .++.....+. .+..+.+...+++++..+|++...+.. +........
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~-------- 91 (355)
T cd05804 22 RPAAAAKAAAAAQALAARATERERAHVEALSAWI-AGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGD-------- 91 (355)
T ss_pred cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcc--------
Confidence 34456677777666554422211 1222222222 235678899999999999999877653 222211100
Q ss_pred cchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
..+....+...++......|..........+... ..|.++.|...+++++..+|.++..+..
T Consensus 92 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-----------------~~G~~~~A~~~~~~al~~~p~~~~~~~~ 153 (355)
T cd05804 92 -FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-----------------EAGQYDRAEEAARRALELNPDDAWAVHA 153 (355)
T ss_pred -cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-----------------HcCCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 0122334444444422222322111111111111 1477899999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCCh----HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh-h
Q 005817 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-S 542 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~-~ 542 (676)
++..+...|++++|...+++++ ...|.+ ...|...+.+....| +.+++..+|++++..-|... .
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l-~~~~~~~~~~~~~~~~la~~~~~~G----------~~~~A~~~~~~~~~~~~~~~~~ 222 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWR-DTWDCSSMLRGHNWWHLALFYLERG----------DYEAALAIYDTHIAPSAESDPA 222 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhh-hccCCCcchhHHHHHHHHHHHHHCC----------CHHHHHHHHHHHhccccCCChH
Confidence 9999999999999999999999 766643 235666677776666 47999999999874322111 0
Q ss_pred H----HHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCcchH-HHHHHHHHHhcCHHHHHHHHHHHHcCCCC-
Q 005817 543 E----SLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLP-SAIINLVIQKDGIQQAREMYKRFLALPRP- 613 (676)
Q Consensus 543 ~----~lW~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~y~~~~~~~g~~~~Ar~iy~~al~~~p~- 613 (676)
. ..+..+........ ...+.+.... .+.... ...... ..++......|+.+.|..+.+.+......
T Consensus 223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~----~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~ 297 (355)
T cd05804 223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYA----AWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA 297 (355)
T ss_pred HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHH----HhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 0 11222111111111 1222222221 111100 011111 13444566688899999999887543211
Q ss_pred --C------HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817 614 --G------LVLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651 (676)
Q Consensus 614 --~------~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~ 651 (676)
. ..+..-........| +.+.|..+...|+...
T Consensus 298 ~~~~~~~~~~~~~~l~A~~~~~~g------~~~~A~~~L~~al~~a 337 (355)
T cd05804 298 DDNKQPARDVGLPLAEALYAFAEG------NYATALELLGPVRDDL 337 (355)
T ss_pred CchhhhHHhhhHHHHHHHHHHHcC------CHHHHHHHHHHHHHHH
Confidence 1 112222233344556 8899999999998875
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.12 E-value=0.0041 Score=70.14 Aligned_cols=148 Identities=13% Similarity=0.085 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh--hHHHHHHHhccccCCCCCCC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK--YWDWLARLKMTDSVSKDGTS 385 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~--~w~~la~~~~~~~~~~~~~~ 385 (676)
+..+|+..|++|.+..+++.+-+....+.|++-+ +.+.+..+.-..-+..|--.. -|...+-++++
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~---~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe--------- 574 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEES---TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE--------- 574 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc---cHHHHHHHHHHHhhhchHHHHHhhhhhccccccC---------
Confidence 4467889999999999998888888888877533 567777776555555554432 35555555554
Q ss_pred cCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817 386 EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464 (676)
Q Consensus 386 ~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l 464 (676)
.+++..|+.-|+.|+...|.+. .|..-- +. +. ..|.+..|..+|.+|...+|.+.-.
T Consensus 575 ----a~n~h~aV~~fQsALR~dPkD~n~W~gLG---eA-Y~--------------~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 575 ----AHNLHGAVCEFQSALRTDPKDYNLWLGLG---EA-YP--------------ESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred ----ccchhhHHHHHHHHhcCCchhHHHHHHHH---HH-HH--------------hcCceehHHHhhhhhHhcCcHhHHH
Confidence 4667889999999999888654 664322 22 11 1477889999999999999887655
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
-+.-+.++..+|.+.+|+..+...+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5556778889999999999988888
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0012 Score=63.34 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
.++.|..+|++.++-.|++.-++.+=+-+.... +..-.+.+-+...+..||.+.++|..+|.+|+.
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~---GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----------- 166 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ---GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS----------- 166 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-----------
Confidence 445677777777777777655544322222222 223466667778888999999999999999987
Q ss_pred cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT 461 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~ 461 (676)
.+.+++|.-.||+.+-..|.+. .+..|++..-... + ..++..++..|++|+..+|.+
T Consensus 167 --~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g---g------------~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 167 --EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG---G------------AENLELARKYYERALKLNPKN 224 (289)
T ss_pred --HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh---h------------HHHHHHHHHHHHHHHHhChHh
Confidence 5889999999999999889877 4555555443221 0 246788899999999887744
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.11 E-value=0.0076 Score=60.29 Aligned_cols=306 Identities=11% Similarity=0.033 Sum_probs=186.6
Q ss_pred hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC
Q 005817 302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK 381 (676)
Q Consensus 302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~ 381 (676)
.+|..+.+..|..-|..||+-.|++......-...|-.++ ....+..-+++.++..|+-..+.+..+...++
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG---ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK----- 118 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMG---KSKAALQDLSRVLELKPDFMAARIQRGVVLLK----- 118 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc---CCccchhhHHHHHhcCccHHHHHHHhchhhhh-----
Confidence 4445567888999999999998887543332222333333 33456667888889999876666666666655
Q ss_pred CCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHH---H------HHhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817 382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL---M------DMIAPKKEETRDSELPSHVEHYISHLLTVY 451 (676)
Q Consensus 382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~---~------~~~~~~~~d~~~~~~~~~~~~~~~~a~~iy 451 (676)
.|.+++|.+-|...|+..|++. .-..+.++. + +..+. ...|+...+.+..
T Consensus 119 --------~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~------------~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 119 --------QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA------------SGSGDCQNAIEMI 178 (504)
T ss_pred --------cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH------------hcCCchhhHHHHH
Confidence 5889999999999999888532 112222211 1 11100 1135678888888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHH
Q 005817 452 EKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (676)
Q Consensus 452 e~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~ 531 (676)
...++..|=+..++..-+..+..-|.+..|+.=+..+- +...+|.+....-.+++-..| +.+.......
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs~DnTe~~ykis~L~Y~vg----------d~~~sL~~iR 247 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLSQDNTEGHYKISQLLYTVG----------DAENSLKEIR 247 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccchHHHHHHHHHHHhhh----------hHHHHHHHHH
Confidence 99999989899999999999999999999988777776 666778888877777776655 3555555567
Q ss_pred HHHhhcChhh-hHHHHHHHHHHHHhhhHHHH---------HHHHHHHHh--hhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817 532 CILTKVSALE-SESLWLMALKFFMNQKHYFD---------KLVEIALIS--VAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (676)
Q Consensus 532 ~Al~~~~~~~-~~~lW~~~l~~~~~~~~~~~---------~~~~~a~~~--~~~~~~~~~~~~~~~~y~~~~~~~g~~~~ 599 (676)
++|+.-|..+ +.+++.. +....+..+.++ ..++...+. ..|.... -....+...-.....-|.+-+
T Consensus 248 ECLKldpdHK~Cf~~YKk-lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~-ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKK-LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM-IRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccCcchhhHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc-eeeeeeheeeecccccCCHHH
Confidence 7777554322 2233321 111111111111 111111111 1222100 000000011122334678889
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCC
Q 005817 600 AREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQN 654 (676)
Q Consensus 600 Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~ 654 (676)
|.+.-..++...|.+...+..-++-...-. +++.|..-|++|++.++++
T Consensus 326 AiqqC~evL~~d~~dv~~l~dRAeA~l~dE------~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 326 AIQQCKEVLDIDPDDVQVLCDRAEAYLGDE------MYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHhcCccc
Confidence 999999999988888876655443332322 7788888888888887744
No 111
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.07 E-value=0.001 Score=72.15 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=137.0
Q ss_pred HHHcc-CchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHH
Q 005817 168 CRQRK-NGRMKKVLAQVIRF--------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-----PTSEELWVEYL 233 (676)
Q Consensus 168 ~~~~~-~~~~~~~~~ral~~--------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-----p~~~~lW~~y~ 233 (676)
+...| ++.+..++.+|++. ||.....-..++.+.. ..+++..|..+|++||.+. ++++.+=..+.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 33344 57788888888887 6665555545666664 5678888888888888654 23444444444
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH--hhhHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE--QGLRV 311 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 311 (676)
++-..+.. .+.|.+ .-++.
T Consensus 288 nLa~ly~~-----------------------------------------------------------~GKf~EA~~~~e~ 308 (508)
T KOG1840|consen 288 NLAVLYYK-----------------------------------------------------------QGKFAEAEEYCER 308 (508)
T ss_pred HHHHHHhc-----------------------------------------------------------cCChHHHHHHHHH
Confidence 43332210 000000 02345
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC---C--CC---hhhHHHHHHHhccccCCCCC
Q 005817 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF---L--VD---PKYWDWLARLKMTDSVSKDG 383 (676)
Q Consensus 312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~---p--~~---~~~w~~la~~~~~~~~~~~~ 383 (676)
|..|+++- ......++...+.++...+...+..+.+..++..+++.. | ++ +.....+|..++.
T Consensus 309 Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~------- 379 (508)
T KOG1840|consen 309 ALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK------- 379 (508)
T ss_pred HHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-------
Confidence 55555551 123344666666666665554445566666665554422 1 22 4456777877765
Q ss_pred CCcCcchhHHHHHHHHHHHHhhccC----c------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 384 TSEDIVPSQMQKAIQVYEEALKNVP----S------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 384 ~~~~~~~~~~~~A~~~ye~al~~~~----~------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
.|++++|.+.|++|++... . ..+|..-....+. ... . + ...-+.++..++ +
T Consensus 380 ------~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~~-~-~---------a~~l~~~~~~i~-~ 440 (508)
T KOG1840|consen 380 ------MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KKY-E-E---------AEQLFEEAKDIM-K 440 (508)
T ss_pred ------hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-ccc-c-h---------HHHHHHHHHHHH-H
Confidence 5889999999999998641 1 1266554443221 100 0 0 012345555555 3
Q ss_pred HHHc-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 454 AEAM-GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 454 al~~-~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+... .|.....+...+..|...|+++.|.++.++++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3332 34556678899999999999999999999888
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.0003 Score=79.92 Aligned_cols=139 Identities=12% Similarity=-0.007 Sum_probs=110.7
Q ss_pred CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHH
Q 005817 324 PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEA 403 (676)
Q Consensus 324 p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~a 403 (676)
|.+.+....+.++..+. +..+.+..+++.+++..|++..++..+|..... .+++++|+..++++
T Consensus 83 ~~~~~~~~~La~i~~~~---g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------------~~~~eeA~~~~~~~ 146 (694)
T PRK15179 83 PHTELFQVLVARALEAA---HRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------------QQGIEAGRAEIELY 146 (694)
T ss_pred cccHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------------hccHHHHHHHHHHH
Confidence 55556655555544443 357899999999999999999999999988765 57899999999999
Q ss_pred hhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817 404 LKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (676)
Q Consensus 404 l~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~ 482 (676)
+...|.+. .-......+.+ .|.+++|..+|++++..+|.+++.|+.|+..+...|+.++|.
T Consensus 147 l~~~p~~~~~~~~~a~~l~~------------------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDE------------------IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHH------------------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99988754 22222222222 377999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCh
Q 005817 483 KLAAKLCSGKLSDS 496 (676)
Q Consensus 483 ~l~~~al~~~~P~~ 496 (676)
..|++|+...-|.+
T Consensus 209 ~~~~~a~~~~~~~~ 222 (694)
T PRK15179 209 DVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhhCcch
Confidence 99999994444444
No 113
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.039 Score=58.66 Aligned_cols=368 Identities=11% Similarity=0.026 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....+...|-.|+...|++.-|+.+-..-..+.+ +..+.+=-.+++.++|.-++.|-..+.-.+ ..|+++.|+..|..
T Consensus 17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~-~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF-GLGDYEEAILAYSE 95 (539)
T ss_pred cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH-hcccHHHHHHHHHH
Confidence 4678899999999999999888877666655555 566666667788999999999988877665 67899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHH------------------------HHHHHhccccccccccccch---------
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLK------------------------ARKVALGEDKGTLVRDHRDA--------- 264 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~------------------------~r~~~l~~~~~~~~~~~~~~--------- 264 (676)
||...|++..|..-....+........ +...++.. .+++|-+.
T Consensus 96 GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~----~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEI----IQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHH----hhcCcHhhhcccccHHH
Confidence 999999998887777665522100000 00000000 01111000
Q ss_pred hHHhhhhhccccccCCCC------CCCCCCC------CCCcchhhhhhh-------------hhHHHhhhHHHHHHHHHH
Q 005817 265 DEKRWINENKGLFMPLDG------EVENTDG------SQPENMESQKSV-------------DLFREQGLRVLQTIYSGA 319 (676)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~~~-------------~~~~~~~~~~a~~iy~~A 319 (676)
.-..|+-.+......... ...+|.. +.+ .+..+... ..+...++..|..-|..+
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPII-EDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCcc-chhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 000000000000000000 0011100 111 11111000 011123567788888888
Q ss_pred HhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHH
Q 005817 320 VEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQV 399 (676)
Q Consensus 320 l~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 399 (676)
++.. ++..+....--.+ |+.. .+.......++.++.--+...-...+++.....++. ....++++.|+..
T Consensus 251 ~el~-~~it~~~n~aA~~--~e~~-~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a------~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 251 LELA-TDITYLNNIAAVY--LERG-KYAECIELCEKAVEVGRELRADYKLIAKALARLGNA------YTKREDYEGAIKY 320 (539)
T ss_pred HhHh-hhhHHHHHHHHHH--Hhcc-HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh------hhhHHhHHHHHHH
Confidence 8776 4444433322111 2221 122222222332222211111222333333221110 0114678899999
Q ss_pred HHHHhhccCchhH---------------HHHHHHHHHHHhcC-ccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817 400 YEEALKNVPSSMI---------------FDLYTKFLMDMIAP-KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (676)
Q Consensus 400 ye~al~~~~~~~l---------------w~~y~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~ 463 (676)
|+++|...-+..+ -..|+..+...-.+ ++++ ....+++..|...|.+|+..+|.++.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne-------~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE-------AFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH-------HHhccCHHHHHHHHHHHHhcCCchhH
Confidence 9999876543221 11222221100000 0000 11346789999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
+|..-+-.+.+.+++..|++=.+.++ +..|+....|.+-+..+.... +.+.+.+.|++|+..-|..
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~i-eL~p~~~kgy~RKg~al~~mk----------~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCI-ELDPNFIKAYLRKGAALRAMK----------EYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhcCchh
Confidence 99999999999999999999999999 889999999988876665443 3677888899998866543
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=4.2e-05 Score=59.46 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=58.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
.|+++.|...|++++..+|.+.++++.++..+.+.|++++|..++++++ ...|+++.+|..+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL-KQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH-GGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999 899999888877654
No 115
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=77.34 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHH
Q 005817 582 SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY 661 (676)
Q Consensus 582 ~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y 661 (676)
.++..|+.+..+.|.+.+...||..|+...|.+..+|..++.+|...- ++++.+|++|.+++.++|.+|.+|..|
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~-----ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI-----ANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhh-----ccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 555588888888888999999999999999999999999998886642 289999999999999999999999999
Q ss_pred HHHHhhc
Q 005817 662 YSTETKV 668 (676)
Q Consensus 662 ~~fE~~~ 668 (676)
..||..+
T Consensus 183 fr~El~y 189 (435)
T COG5191 183 FRMELMY 189 (435)
T ss_pred HHHHHHH
Confidence 9999875
No 116
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.88 E-value=1.9e-05 Score=49.68 Aligned_cols=31 Identities=19% Similarity=0.362 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817 636 SLVNARKLFESALATYDQNTSLWRDYYSTETK 667 (676)
Q Consensus 636 ~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~ 667 (676)
++++||.+|++.+...| ++..|+.|+.||.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe~ 32 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEER 32 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhcC
Confidence 68999999999999875 58999999999964
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.82 E-value=0.016 Score=65.64 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817 174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 174 ~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e 236 (676)
..+..+|-++++++|+....|-..+...-+.. ++..|+..|++|....|+....|...+...
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 45677888888888888888888887765433 788888888888888888777777766543
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.75 E-value=0.00038 Score=73.50 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|...|++|+...|++..+|...+..+...| +..+...+++++.+.|.++..|...+...+ ..|+++.|...|+++
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~a 96 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 568899999999999999999999999988887 578999999999999999999999998886 689999999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRM 235 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~ 235 (676)
++..|++..+.....+.
T Consensus 97 l~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 97 ASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHhCCCCHHHHHHHHHH
Confidence 99999987665554444
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.71 E-value=0.0076 Score=69.56 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=45.5
Q ss_pred CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (676)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~ 402 (676)
.|.+......+..+|.+. +..+.+..+++++++..|+++.+...+|..+-+ . ++++|...+.+
T Consensus 112 ~~~~k~Al~~LA~~Ydk~---g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------------~-dL~KA~~m~~K 174 (906)
T PRK14720 112 YGENKLALRTLAEAYAKL---NENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------------E-DKEKAITYLKK 174 (906)
T ss_pred hhhhhHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------------h-hHHHHHHHHHH
Confidence 444433444444444443 345678888888888888888888888877644 2 68888888888
Q ss_pred Hhhc
Q 005817 403 ALKN 406 (676)
Q Consensus 403 al~~ 406 (676)
|+..
T Consensus 175 AV~~ 178 (906)
T PRK14720 175 AIYR 178 (906)
T ss_pred HHHH
Confidence 8875
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.70 E-value=0.038 Score=60.82 Aligned_cols=71 Identities=11% Similarity=-0.073 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
.|.+++|....++||...|+.+++++.-+.++...|++++|...++.|- ...+.+--+-..-+....+.|.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD~~DRyiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELDLADRYINSKCAKYLLRAGR 277 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCChhhHHHHHHHHHHHHHCCC
Confidence 4778999999999999999999999999999999999999999999998 7777777777787888887764
No 121
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0039 Score=63.90 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=110.4
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLM 421 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~ 421 (676)
....+.++--+.++..+.+......-+..+.. ....++|...|+++|..-|... .-..-.+-++
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-------------~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYY-------------NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhccccccc-------------ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence 34556666667777788776654443333322 3568999999999999877532 1111222222
Q ss_pred HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
.+-.. +++ ....|++..|-+.|..||..+|.+ ..+|..-+....+.|+..+|+.-.++|+ ...|...
T Consensus 251 ~~k~~-gN~-------~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syi 321 (486)
T KOG0550|consen 251 VKKER-GND-------AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYI 321 (486)
T ss_pred HHHhh-hhh-------HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHH
Confidence 22111 111 123588999999999999999985 4578888888889999999999999999 7777766
Q ss_pred HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
.-...+++...-.+ +.+++.+-|++|++.
T Consensus 322 kall~ra~c~l~le----------~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALE----------KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHhh
Confidence 66777776666554 367788888888875
No 122
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=0.00019 Score=55.73 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~ 234 (676)
+..+...|++++..+|+++.+++.++...+ ..|+++.|+.++++++...|+++.+|...++
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 578899999999999999999999999987 6789999999999999999998777766554
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.0019 Score=67.77 Aligned_cols=103 Identities=10% Similarity=0.009 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
...+.++..+...+..+|+|.-+|..-.+...+.+ ...+.+.+.+++...|..+-+|+.|+...+ ..|+...|..+++
T Consensus 320 ~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~ 398 (484)
T COG4783 320 GQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILN 398 (484)
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHH
Confidence 44677889999999999999999999999998887 578999999999999999999999999998 6889999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLN 241 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~ 241 (676)
+++...|+++..|..+++-....++
T Consensus 399 ~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 399 RYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCc
Confidence 9999999999999999987665543
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00068 Score=71.62 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
.++++.|+..|++|+..+|.++..|...+..+...|++++|+..+++++ ...|.+...|..++.++...|
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg--------- 84 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLE--------- 84 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhC---------
Confidence 4678999999999999999999999999999999999999999999999 899999999999988887776
Q ss_pred hchHHHHHHHHHHHhhcChhhhHHHHHH
Q 005817 521 ADILSIFELLKCILTKVSALESESLWLM 548 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~ 548 (676)
+.+++...|++|+...|.......|..
T Consensus 85 -~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 -EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 479999999999998776655556654
No 125
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.60 E-value=0.0001 Score=47.87 Aligned_cols=32 Identities=31% Similarity=0.658 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817 636 SLVNARKLFESALATYDQNTSLWRDYYSTETK 667 (676)
Q Consensus 636 ~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~ 667 (676)
+.+++|.+|++++..+|.++.+|+.|++||.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~~ 33 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEER 33 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHhC
Confidence 67899999999999999889999999999863
No 126
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00023 Score=54.72 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
.|+++.|+..|++++..+|.+++.|..++.++...|++++|+.++++++ +..|+++
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~-~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL-ELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT-H
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCC
Confidence 4789999999999999999999999999999999999999999999999 8889864
No 127
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.55 E-value=0.00041 Score=53.99 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCC
Q 005817 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCP 223 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ral~~~p 223 (676)
+...|...+......+ +..+...|++++..+|+++.+|...+.... ..| +...|...|++++..+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 5678999999888877 689999999999999999999999999986 577 79999999999999988
No 128
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.0003 Score=54.08 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817 165 MEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (676)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~ 226 (676)
+......| ++.+..+|++++..+|.++..|..++.... ..|+++.|+..|++++...|+++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 34444555 578999999999999999999999999987 78899999999999999999874
No 129
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.48 E-value=0.0021 Score=52.24 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
.+++++|...|+++++..|... .|......... .++++.|...|++++...|.++..|...
T Consensus 13 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------------------LGKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 4678999999999998877653 34333333322 3668899999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
+.++...|+++.|...+.+++ ..+|+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~-~~~~~ 100 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKAL-ELDPN 100 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-ccCCC
Confidence 999999999999999999998 76663
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.45 E-value=0.0012 Score=59.66 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....|..+|+-.+...|.+..-|+.+.-.+...| +..+...|.+|+.+.|++|......+.-.+ ..|+++.|+..|+.
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L-~lG~~~~A~~aF~~ 128 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL-ACDNVCYAIKALKA 128 (157)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 3577899999999999999999999999998877 689999999999999999999999998887 78999999999999
Q ss_pred HHHhCCCC
Q 005817 218 GLRVCPTS 225 (676)
Q Consensus 218 al~~~p~~ 225 (676)
++.++...
T Consensus 129 Ai~~~~~~ 136 (157)
T PRK15363 129 VVRICGEV 136 (157)
T ss_pred HHHHhccC
Confidence 99999543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.45 E-value=0.0034 Score=65.89 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=98.5
Q ss_pred CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH 439 (676)
Q Consensus 361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~ 439 (676)
|.....|+-.|..++. .+.++.|+..+..-++..|++. +|..-.+...+
T Consensus 303 ~~~~aa~YG~A~~~~~-------------~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----------------- 352 (484)
T COG4783 303 RGGLAAQYGRALQTYL-------------AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE----------------- 352 (484)
T ss_pred ccchHHHHHHHHHHHH-------------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------
Confidence 5556666666655544 3678899999999998888765 44443333333
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
.+....|.+.+++++..+|..+-+|+.|++.+++.|++++|..++.+.+ ...|.++..|...++.+...|+
T Consensus 353 -~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~-~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 353 -ANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYL-FNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred -cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCCCchHHHHHHHHHHHhCc
Confidence 3668999999999999999999999999999999999999999999999 8999999999999998887764
No 132
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.44 E-value=0.0014 Score=57.05 Aligned_cols=109 Identities=17% Similarity=0.283 Sum_probs=76.9
Q ss_pred HhhHHhHHHhhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHH
Q 005817 76 KQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVM 152 (676)
Q Consensus 76 ~~R~~fE~~l~~---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~ 152 (676)
..|..||..|.+ ...-+..|++||.|=.... +.. +.......+++||++
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~------------------------p~g----~~~s~L~~lLerc~~ 54 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENY------------------------PQG----GKESGLLTLLERCIR 54 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhC------------------------CCC----CchhhHHHHHHHHHH
Confidence 568999999953 2234688999999843210 000 112456788889988
Q ss_pred hCCC---------CHHHHHHHHHHHHHccCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 153 RFKG---------DIELWFKYMEFCRQRKNGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 153 ~~p~---------~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
.|-+ -+++|+.|++++. ..+.+|.-+.... -....+|..+|.+. +..|++..|..+|++|
T Consensus 55 ~f~~~~~YknD~RyLkiWi~ya~~~~-----dp~~if~~L~~~~IG~~~AlfYe~~A~~l-E~~g~~~~A~~iy~~G 125 (125)
T smart00777 55 YFEDDERYKNDPRYLKIWLKYADNCD-----EPRELFQFLYSKGIGTKLALFYEEWAQLL-EAAGRYKKADEVYQLG 125 (125)
T ss_pred HhhhhhhhcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHcc
Confidence 8643 3589999999862 3466777665532 33678999999987 6899999999999875
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.44 E-value=0.0053 Score=55.81 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHhcCCCC---hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLM 421 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~---~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~ 421 (676)
....+...++.++..+|++ ....+.+|...+. .+++++|...|+.++...|...+ ...+.+..
T Consensus 26 ~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-------------~g~~~~A~~~l~~~~~~~~d~~l-~~~a~l~L 91 (145)
T PF09976_consen 26 DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-------------QGDYDEAKAALEKALANAPDPEL-KPLARLRL 91 (145)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCCCHHH-HHHHHHHH
Confidence 3455677888899999998 3446777887765 47899999999999998765431 11112111
Q ss_pred HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
..+. ..++.++.|...++. +...+..+..+...++++...|++++|+..|++|+
T Consensus 92 A~~~-------------~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARIL-------------LQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHH-------------HHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1110 014678999999866 33345567788889999999999999999999985
No 134
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.42 E-value=0.00028 Score=45.71 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 206 LNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 206 ~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
|+++.||.+|+++++.+|.+..+|..|++|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 46788899999999988888899999988874
No 135
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00035 Score=48.96 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817 191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (676)
Q Consensus 191 ~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~ 234 (676)
|.+|..++..+. ..|+++.|+.+|+++++.+|+++.+|..+++
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468899999886 6889999999999999999999999988765
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0037 Score=62.05 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhc
Q 005817 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA 425 (676)
Q Consensus 347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~ 425 (676)
+..-.-++.-+..+|++.+-|..+++.++. .++...|...|.+|++..|.+. ++..|.....-.-
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-------------~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a- 204 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMA-------------LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA- 204 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------------hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Confidence 344445666788899999999999999986 5789999999999999988654 8888877665421
Q ss_pred CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
+ +....++..++++++..+|.+...-..++.-+...|++.+|...++..+ ...|.+ .-|...|+
T Consensus 205 --~------------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL-~~lp~~-~~rr~~ie 268 (287)
T COG4235 205 --G------------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLL-DLLPAD-DPRRSLIE 268 (287)
T ss_pred --C------------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCC-CchHHHHH
Confidence 1 2345789999999999999998887788888889999999999999999 656653 12444443
No 137
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.37 E-value=0.00029 Score=44.40 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 207 NVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 207 ~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
.++.||.+|+|.+..+|+ ...|+.|++||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 467888888888888886 688888888874
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.36 E-value=0.0014 Score=53.37 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...+++++...|.+...|..++......+ ...+...|++++...|.++..|...+.... ..|+.+.|...+.++
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~ 94 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY-KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 466788999999999998888888888887766 578899999999999999889988888876 577899999999999
Q ss_pred HHhCCC
Q 005817 219 LRVCPT 224 (676)
Q Consensus 219 l~~~p~ 224 (676)
++.+|.
T Consensus 95 ~~~~~~ 100 (100)
T cd00189 95 LELDPN 100 (100)
T ss_pred HccCCC
Confidence 988873
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.0021 Score=63.48 Aligned_cols=94 Identities=9% Similarity=-0.005 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
.....|...|.+|+...|.|.-++-.-+....+.| +..|.+-.+.||.++|+..+.|.......+ ..|++..|...|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHH
Confidence 34678999999999999999999998888888888 688999999999999999999999998886 6889999999999
Q ss_pred HHHHhCCCCHHHHHHH
Q 005817 217 NGLRVCPTSEELWVEY 232 (676)
Q Consensus 217 ral~~~p~~~~lW~~y 232 (676)
+||.+.|+++..|..+
T Consensus 174 KaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 174 KALELDPDNESYKSNL 189 (304)
T ss_pred hhhccCCCcHHHHHHH
Confidence 9999999987544443
No 140
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.31 Score=52.08 Aligned_cols=315 Identities=15% Similarity=0.048 Sum_probs=173.3
Q ss_pred HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCC
Q 005817 305 REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGT 384 (676)
Q Consensus 305 ~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~ 384 (676)
..++++.|...|-.||...|.+.-++..=-..+... +.++.+.+--.+.++.+|+=+..|...+-..+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-------- 82 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-------- 82 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh--------
Confidence 346888999999999998887743333222222221 234445555566778888888888877766543
Q ss_pred CcCcchhHHHHHHHHHHHHhhccCchh-----HHHHHHH----------------------------------HHHHHhc
Q 005817 385 SEDIVPSQMQKAIQVYEEALKNVPSSM-----IFDLYTK----------------------------------FLMDMIA 425 (676)
Q Consensus 385 ~~~~~~~~~~~A~~~ye~al~~~~~~~-----lw~~y~~----------------------------------~~~~~~~ 425 (676)
.++++.|+..|.+||+..|+++ +-..+.. .++.+-.
T Consensus 83 -----lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 83 -----LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred -----cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 5788999999999998887755 1122210 0000000
Q ss_pred C------ccccccC-----------------C--------------CC-----Ch----------------------hhh
Q 005817 426 P------KKEETRD-----------------S--------------EL-----PS----------------------HVE 441 (676)
Q Consensus 426 ~------~~~d~~~-----------------~--------------~~-----~~----------------------~~~ 441 (676)
. ...|+.+ . .+ .+ ...
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 0000000 0 00 00 011
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH---HHHHhccccCCCC
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS---VEIRCVTRNSFSP 518 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~---l~~~~~~~~~~~p 518 (676)
.+...+..-|..++..+ .+-.....-+..+...|.+...+...+.++ +.. .+.|..+-. ...+.|....
T Consensus 238 k~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~g---re~rad~klIak~~~r~g~a~~--- 309 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAV-EVG---RELRADYKLIAKALARLGNAYT--- 309 (539)
T ss_pred hhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHh---HHHHHHHHHHHHHHHHhhhhhh---
Confidence 24567777888888877 666667777777788888888887777777 322 233333221 1112121000
Q ss_pred ChhchHHHHHHHHHHHhhcCh-h---------hhHHHHHH--HHH-------------HHHhhh-HHHHHHHHHHHHhhh
Q 005817 519 SKADILSIFELLKCILTKVSA-L---------ESESLWLM--ALK-------------FFMNQK-HYFDKLVEIALISVA 572 (676)
Q Consensus 519 ~~~~~~~~~~~f~~Al~~~~~-~---------~~~~lW~~--~l~-------------~~~~~~-~~~~~~~~~a~~~~~ 572 (676)
.-++.+.+.+.|++++...-. + +..+.+.. |++ +|.... ..+-+-|++|+. ..
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk-r~ 388 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK-RD 388 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cC
Confidence 012456677777777753111 1 01111111 110 000000 112233555553 23
Q ss_pred hCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 573 ~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
|++ ...+..-+....++|.+..|.+--++++++.|+...-|..=......+. +++.+-+.|+.+++..|
T Consensus 389 P~D-----a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk------~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 389 PED-----ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK------EYDKALEAYQEALELDP 457 (539)
T ss_pred Cch-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCc
Confidence 433 2333334555677888888888888888888877775544444444444 78899999999999988
Q ss_pred CCc
Q 005817 653 QNT 655 (676)
Q Consensus 653 ~~~ 655 (676)
++.
T Consensus 458 ~~~ 460 (539)
T KOG0548|consen 458 SNA 460 (539)
T ss_pred hhH
Confidence 654
No 141
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.32 E-value=0.00037 Score=48.84 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
|+.|..++..+.+.|++++|.+++++++ +.+|+++..|..+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l-~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRAL-ALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCHHHHHHhhh
Confidence 4689999999999999999999999999 899999999998764
No 142
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.28 E-value=0.0035 Score=68.62 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
|.+..|..+|++ ..+|..-+.++...|...+|..+..+-+ + .|+.+.+|..+.++.
T Consensus 412 GitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l-e-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 412 GITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL-E-KDPDPRLYCLLGDVL 467 (777)
T ss_pred chHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh-c-CCCcchhHHHhhhhc
Confidence 678889999987 5688899999999999999998988888 5 566677777776554
No 143
>PRK11906 transcriptional regulator; Provisional
Probab=97.26 E-value=0.054 Score=57.37 Aligned_cols=136 Identities=10% Similarity=0.033 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHh---hccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817 390 PSQMQKAIQVYEEAL---KNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (676)
Q Consensus 390 ~~~~~~A~~~ye~al---~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~ 463 (676)
+.....|...|.+|+ ...|... -|.++..+......... .......|++.-++|++.+|.++-
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-----------~~~~~~~a~~~A~rAveld~~Da~ 339 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-----------LELAAQKALELLDYVSDITTVDGK 339 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-----------chHHHHHHHHHHHHHHhcCCCCHH
Confidence 356788999999999 4444322 34444444442221111 135678899999999999999988
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhh-
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALES- 542 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~- 542 (676)
.-...+....-.++++.|..++++|+ ..+|++...|..+..+..-.| +.+++.+.+++|++..|..-.
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G----------~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNE----------KIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcC----------CHHHHHHHHHHHhccCchhhHH
Confidence 77777777777778999999999999 999999999999887777666 478999999999998776533
Q ss_pred --HHHHH
Q 005817 543 --ESLWL 547 (676)
Q Consensus 543 --~~lW~ 547 (676)
.++|.
T Consensus 409 ~~~~~~~ 415 (458)
T PRK11906 409 VVIKECV 415 (458)
T ss_pred HHHHHHH
Confidence 34555
No 144
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0012 Score=51.89 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW 229 (676)
+..+.+++++++..+|.++.+|..++.... ..|+++.|...|++++...|+++.+-
T Consensus 11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 11 YEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 578999999999999999999999999987 68899999999999999999876543
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0023 Score=63.23 Aligned_cols=90 Identities=12% Similarity=-0.025 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
.+++..|...|.+||..+|.++-+|+.=+.-+.+.|.++.|.+=++.|+ ...|++.+.|.+........|.
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~gk-------- 164 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALGK-------- 164 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccCc--------
Confidence 3679999999999999999999999999999999999999999999999 9999999999998877776663
Q ss_pred hchHHHHHHHHHHHhhcChhh
Q 005817 521 ADILSIFELLKCILTKVSALE 541 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~ 541 (676)
.+++.+-|++||..-|.++
T Consensus 165 --~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 165 --YEEAIEAYKKALELDPDNE 183 (304)
T ss_pred --HHHHHHHHHhhhccCCCcH
Confidence 6888888999999777654
No 146
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.05 Score=52.90 Aligned_cols=160 Identities=17% Similarity=0.096 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (676)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~ 221 (676)
+..-+-+...+.|+|..+ ..+..-+...| .+....+..+++..+|.+..+-..+++..+ .+||+..|...|.++.+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhcc
Confidence 344555777799999999 88887776666 356677888888899999888877888887 689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhh
Q 005817 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV 301 (676)
Q Consensus 222 ~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (676)
.|++.++|....-.....
T Consensus 130 ~p~d~~~~~~lgaaldq~-------------------------------------------------------------- 147 (257)
T COG5010 130 APTDWEAWNLLGAALDQL-------------------------------------------------------------- 147 (257)
T ss_pred CCCChhhhhHHHHHHHHc--------------------------------------------------------------
Confidence 999999888766543332
Q ss_pred hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817 302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (676)
Q Consensus 302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~ 374 (676)
++.+.|+.-|.+|++..|.+......+.-.+ -+.+..+.++.++......-+.+..+-..++...
T Consensus 148 -----Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~---~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 148 -----GRFDEARRAYRQALELAPNEPSIANNLGMSL---LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred -----cChhHHHHHHHHHHHhccCCchhhhhHHHHH---HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2445677777777777776655544432222 1224566777777777776666666666666554
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.16 E-value=0.024 Score=62.38 Aligned_cols=113 Identities=13% Similarity=0.123 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (676)
Q Consensus 346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~ 424 (676)
++.+...++..++.+|-....|+.++-..+. .++.+.|.+.|..++..-|+.. -|+........
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-------------lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-- 565 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQ-------------LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-- 565 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHH-------------HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH--
Confidence 4556666777777777777777777666654 4667777777777777766543 56554443333
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.+...+|...+.+|++.+-.+..+|.+|..+..+.|.+++|.+.|.+.+
T Consensus 566 ----------------~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 566 ----------------LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred ----------------HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 2345677777888887776677788888888888888888887777776
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.15 E-value=0.0061 Score=64.44 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~ 469 (676)
.++++.|+.+|++..+..|.... ..++.... .+.-.+|..++.+++..+|.+.++....+
T Consensus 182 t~~~~~ai~lle~L~~~~pev~~--~LA~v~l~------------------~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEVAV--LLARVYLL------------------MNEEVEAIRLLNEALKENPQDSELLNLQA 241 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcHHH--HHHHHHHh------------------cCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35689999999999888776432 22232222 12246889999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
+++++.++++.|+.+.++|+ ...|.+...|...+..++..|+
T Consensus 242 ~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAV-ELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999 8999999999999999998875
No 149
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.14 E-value=0.41 Score=49.41 Aligned_cols=130 Identities=14% Similarity=-0.045 Sum_probs=96.8
Q ss_pred CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhh
Q 005817 362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVE 441 (676)
Q Consensus 362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~ 441 (676)
.+|.+-..+|...+. ++..+.|..+.+++++..-+..+...| . ... .
T Consensus 261 ~~p~l~~~~a~~li~-------------l~~~~~A~~~i~~~Lk~~~D~~L~~~~-~----~l~---------------~ 307 (400)
T COG3071 261 NDPELVVAYAERLIR-------------LGDHDEAQEIIEDALKRQWDPRLCRLI-P----RLR---------------P 307 (400)
T ss_pred cChhHHHHHHHHHHH-------------cCChHHHHHHHHHHHHhccChhHHHHH-h----hcC---------------C
Confidence 345555666666654 678899999999999876554432221 1 111 2
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~ 521 (676)
++.+......++.+..+|.+|.++...+.++.+++.+.+|...++.|+ + .-.+..-|...++...+.|+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl-~-~~~s~~~~~~la~~~~~~g~--------- 376 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL-K-LRPSASDYAELADALDQLGE--------- 376 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH-h-cCCChhhHHHHHHHHHHcCC---------
Confidence 456778888899999999999999999999999999999999999999 4 34455666666777777664
Q ss_pred chHHHHHHHHHHHhh
Q 005817 522 DILSIFELLKCILTK 536 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~ 536 (676)
...+.+++++++..
T Consensus 377 -~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 -PEEAEQVRREALLL 390 (400)
T ss_pred -hHHHHHHHHHHHHH
Confidence 68888888888853
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.14 E-value=0.0067 Score=52.52 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc---H
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---E 462 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~---~ 462 (676)
.+++++|...|++++...|... .+......... .++++.|...|+.++..+|.+ +
T Consensus 15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA------------------QGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh------------------hccHHHHHHHHHHHHHHCCCCCccc
Confidence 4789999999999998777532 22112222211 367899999999999987774 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
..+...+..+...|++++|...+++++ ..+|++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~ 111 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVI-KRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHH-HHCcCChh
Confidence 789999999999999999999999999 88898753
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.13 E-value=0.0028 Score=49.17 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 461 TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 461 ~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
++..|...+..+...|++++|+..|.+++ ...|+++.+|..+.......++ +.+++.+.|++|++.-|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~~p~~~~~~~~~g~~~~~~~~---------~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI-ELDPNNAEAYYNLGLAYMKLGK---------DYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH-HHSTTHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCc---------cHHHHHHHHHHHHHcCc
Confidence 46788888888888899999999999998 7888888888888887777652 36778888888876543
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.13 E-value=0.0078 Score=63.64 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH
Q 005817 344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD 422 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~ 422 (676)
+..+.+..+++++.+.+|+ .+..+|+.++. .++-.+|..+.+++++..|... +....++|...
T Consensus 183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-------------~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERDPE---VAVLLARVYLL-------------MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred ccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-------------cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 4577899999999998865 66678888765 2445789999999999888544 77778888876
Q ss_pred HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005817 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAA 486 (676)
Q Consensus 423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~ 486 (676)
.+..+.|..+.++|+...|.+.+.|...+..+...|+++.|+..+.
T Consensus 247 ------------------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 247 ------------------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred ------------------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 3567999999999999999999999999999999999999986544
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.10 E-value=0.0044 Score=56.00 Aligned_cols=86 Identities=10% Similarity=0.012 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
.|+++.|..+|+-....+|.+.+.|..++-.+...|++++|+..|.+|. ...|+++.............|
T Consensus 48 ~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~~ddp~~~~~ag~c~L~lG--------- 117 (157)
T PRK15363 48 VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIKIDAPQAPWAAAECYLACD--------- 117 (157)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCchHHHHHHHHHHHcC---------
Confidence 4789999999999999999999999999999999999999999999999 889999999988888887776
Q ss_pred hchHHHHHHHHHHHhhc
Q 005817 521 ADILSIFELLKCILTKV 537 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~ 537 (676)
+++.+++-|+.|+..+
T Consensus 118 -~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 -NVCYAIKALKAVVRIC 133 (157)
T ss_pred -CHHHHHHHHHHHHHHh
Confidence 4899999999999876
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0023 Score=50.36 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (676)
.++++.|..++++++..+|.++..|..++.++...|++++|...+++++ +..|++...-...
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l-~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL-ELSPDDPDARALR 69 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH-HHCCCcHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999 8899876554433
No 155
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.11 Score=50.51 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
|.+..+...++....++|++..|...+.++. ...|++.+.|....-.+.+.|
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCCCChhhhhHHHHHHHHcc
Confidence 4444444445555555555555555555555 445555555555444444443
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.97 E-value=0.011 Score=51.10 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHH
Q 005817 140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR 212 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar 212 (676)
...+...|++++..+|++ ...+..++....+.+ +..+...|++++..+|++ +.+|...+.... ..|+.+.|.
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~A~ 96 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ-ELGDKEKAK 96 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH-HhCChHHHH
Confidence 567889999999999987 467777777777766 578999999999999885 678888888875 688999999
Q ss_pred HHHHHHHHhCCCCHH
Q 005817 213 ALMQNGLRVCPTSEE 227 (676)
Q Consensus 213 ~~~~ral~~~p~~~~ 227 (676)
..+++++...|++..
T Consensus 97 ~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 97 ATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHCcCChh
Confidence 999999999998754
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.97 E-value=0.0029 Score=51.46 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=65.8
Q ss_pred hhhHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCC
Q 005817 441 EHYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~--~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p 518 (676)
+++++.|...|++++...|. +...|+..+..+.+.|++++|..++++ . +..|.+.......+......+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~~~~~~l~a~~~~~l~~------ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDPSNPDIHYLLARCLLKLGK------ 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHHCHHHHHHHHHHHHHHTT-------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCCHHHHHHHHHHHHHhCC------
Confidence 46789999999999999885 466788899999999999999999999 6 6677777777777887777764
Q ss_pred ChhchHHHHHHHHHH
Q 005817 519 SKADILSIFELLKCI 533 (676)
Q Consensus 519 ~~~~~~~~~~~f~~A 533 (676)
.+++.++|++|
T Consensus 74 ----y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 ----YEEAIKALEKA 84 (84)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHhcC
Confidence 67787777764
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.85 E-value=0.077 Score=58.74 Aligned_cols=153 Identities=15% Similarity=0.014 Sum_probs=107.0
Q ss_pred HHHhcCCCChhhHHHHHH--HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHH--HHHHHHHHHhcCccc
Q 005817 355 DMQRDFLVDPKYWDWLAR--LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFD--LYTKFLMDMIAPKKE 429 (676)
Q Consensus 355 ~~~~~~p~~~~~w~~la~--~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~--~y~~~~~~~~~~~~~ 429 (676)
.+...-|.++.+|..+.+ .++...+ .+...+|+..|++|++..|+.. .|. .++......+. ..
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~--~~ 395 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGD----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ--PL 395 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC--Cc
Confidence 344566788888765543 3332211 3568899999999999999754 111 11121221111 10
Q ss_pred cccCCCCChhhhhhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 430 ETRDSELPSHVEHYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 430 d~~~~~~~~~~~~~~~~a~~iye~al~~--~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
.+..+..+....++++.. +|.++.++...+-.....|++++|...+++|+ ...| +...|..+..+.
T Consensus 396 ----------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 396 ----------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLEM-SWLNYVLLGKVY 463 (517)
T ss_pred ----------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCC-CHHHHHHHHHHH
Confidence 124467777778887774 67778888888888888999999999999999 8888 567788888888
Q ss_pred HHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817 508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (676)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~ 541 (676)
...|+ .+++.+.|++|+..-|...
T Consensus 464 ~~~G~----------~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 464 ELKGD----------NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHcCC----------HHHHHHHHHHHHhcCCCCc
Confidence 77774 7999999999998766543
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.05 Score=54.20 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCc
Q 005817 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (676)
Q Consensus 309 ~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~ 388 (676)
+..|..-|.+|+...|++.+.+..+-+++..-..+.....++.++++++..+|++...-.++|..+++
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe------------ 239 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE------------ 239 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH------------
Confidence 34456666666666666666666555544322222234566777777777777777766677766665
Q ss_pred chhHHHHHHHHHHHHhhccCchhHHHH
Q 005817 389 VPSQMQKAIQVYEEALKNVPSSMIFDL 415 (676)
Q Consensus 389 ~~~~~~~A~~~ye~al~~~~~~~lw~~ 415 (676)
.+++.+|...++.-++..|.+.=|..
T Consensus 240 -~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 240 -QGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred -cccHHHHHHHHHHHHhcCCCCCchHH
Confidence 46788888888888888776554443
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.044 Score=51.15 Aligned_cols=88 Identities=8% Similarity=-0.045 Sum_probs=67.3
Q ss_pred HHHHhCCCC--HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817 149 LAVMRFKGD--IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 149 ral~~~p~~--~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~ 222 (676)
..++..+.+ ...|...+......+ ++.+...|.+++...|+. +..|...+.... ..|+.+.|...+++++...
T Consensus 24 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 24 RILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERN 102 (168)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 333444444 567777777776666 578999999999998764 347888888775 7889999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 005817 223 PTSEELWVEYLRMEL 237 (676)
Q Consensus 223 p~~~~lW~~y~~~e~ 237 (676)
|.....|...+.+..
T Consensus 103 ~~~~~~~~~la~i~~ 117 (168)
T CHL00033 103 PFLPQALNNMAVICH 117 (168)
T ss_pred cCcHHHHHHHHHHHH
Confidence 998877766665544
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.55 E-value=0.01 Score=48.16 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHhhccCch--h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSS--M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~--~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.++++.|+..|++.++..|++ . .|...+....+ .|++++|..++++ ...++.++....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~------------------~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ------------------QGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH------------------TTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH------------------CCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 367899999999999998853 2 33322222222 4779999999999 666777778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 005817 467 RYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~a 488 (676)
.++..+.+.|++++|+++++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 8899999999999999999875
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.40 E-value=0.096 Score=47.48 Aligned_cols=118 Identities=19% Similarity=0.036 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc---HHHHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---EDIAHR 467 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~---~~lw~~ 467 (676)
++...+...++.-++..|... +...+.+...... ...|++++|...|+.++...|.. +...+.
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~-------------~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAA-------------YEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHH-------------HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 345666667777777666542 1122222221110 01477999999999999986543 456888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al 534 (676)
.+.++...|++++|+.+++.. ...+..+..+....++....| +.++++..|++||
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~--~~~~~~~~~~~~~Gdi~~~~g----------~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI--PDEAFKALAAELLGDIYLAQG----------DYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc--cCcchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHhC
Confidence 899999999999999999763 345556778888888888876 4799999999885
No 163
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.37 E-value=0.086 Score=46.44 Aligned_cols=115 Identities=12% Similarity=0.167 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH-hc
Q 005817 524 LSIFELLKCILTKVS-ALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ-KD 595 (676)
Q Consensus 524 ~~~~~~f~~Al~~~~-~~~~~~lW~~~l~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~-~g 595 (676)
++.++.|+..|.... .++.+..|..|+...+... ..+..++++++..+..+..- ..+. -|+..-.. ..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y--~nD~--RylkiWi~ya~ 77 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERY--KNDE--RYLKIWIKYAD 77 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGG--TT-H--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhh--cCCH--HHHHHHHHHHH
Confidence 445667899998776 6677889999998876542 45677888888766433211 1111 24432111 22
Q ss_pred CHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH
Q 005817 596 GIQQAREMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESAL 648 (676)
Q Consensus 596 ~~~~Ar~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al 648 (676)
-.+.++.+|+-+.. +......+|..++.+....+ +.++|.++|..++
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~------~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG------NFKKADEIYQLGI 126 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-------HHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC------CHHHHHHHHHhhC
Confidence 23488999988754 45566789999999888888 8999999999885
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.31 E-value=0.046 Score=54.85 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR 212 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar 212 (676)
...+...|+..+..+|++. ..+...++.....| +..+...|.+++..+|.+ ++.|...+.... ..|+.+.|+
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~-~~g~~~~A~ 237 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ-DKGDTAKAK 237 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH-HcCCHHHHH
Confidence 4677888999999999883 45555555555555 578899999999998874 678887777764 578999999
Q ss_pred HHHHHHHHhCCCCH
Q 005817 213 ALMQNGLRVCPTSE 226 (676)
Q Consensus 213 ~~~~ral~~~p~~~ 226 (676)
.+|++.++..|++.
T Consensus 238 ~~~~~vi~~yP~s~ 251 (263)
T PRK10803 238 AVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHCcCCH
Confidence 99999999999874
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.28 E-value=0.13 Score=51.62 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHH-HHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005817 157 DIELWFKYMEFC-RQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVE 231 (676)
Q Consensus 157 ~~~lW~~y~~~~-~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~ 231 (676)
+..-|..++--+ .+.| +..+...|+..+..+|++ +..++..+...+ ..|+++.|...|++.+...|+++.....
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 345555544432 2333 456666777777777765 345555555554 4567777777777777777766444444
Q ss_pred HHH
Q 005817 232 YLR 234 (676)
Q Consensus 232 y~~ 234 (676)
+++
T Consensus 220 l~k 222 (263)
T PRK10803 220 MFK 222 (263)
T ss_pred HHH
Confidence 433
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.27 E-value=2.8 Score=47.85 Aligned_cols=225 Identities=19% Similarity=0.192 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
+++.+|.....+.++..|+.. ...++..+- .|..+.|..+++..-...+.+......
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r--------------------~gk~~ea~~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR--------------------LGKGDEALKLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------------------hcCchhHHHHHhhhccCCCCchHHHHH
Confidence 567888888888888888744 223332222 234455555555444444555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhch-HHHHHHHHHHHhhcChhhhHHHH
Q 005817 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADI-LSIFELLKCILTKVSALESESLW 546 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~-~~~~~~f~~Al~~~~~~~~~~lW 546 (676)
....+.+.|..++|..+|++++ +.+|. .++...+...+.+.+. +... ..+.++|+ .+|. ...-||
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~-~~~P~-eell~~lFmayvR~~~-------yk~qQkaa~~LyK----~~pk-~~yyfW 148 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERAN-QKYPS-EELLYHLFMAYVREKS-------YKKQQKAALQLYK----NFPK-RAYYFW 148 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH-hhCCc-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH----hCCc-ccchHH
Confidence 6677889999999999999999 99999 6666666655555432 1111 12233333 2343 345688
Q ss_pred HHHHHHHHhhh-----------HHHHHHHHHHHHhhhhCCCC-CCCcchHHHHHHHHHHhcCHHHHHHHHHHHH--cCCC
Q 005817 547 LMALKFFMNQK-----------HYFDKLVEIALISVAKDGGG-ESGFSLPSAIINLVIQKDGIQQAREMYKRFL--ALPR 612 (676)
Q Consensus 547 ~~~l~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al--~~~p 612 (676)
....-++.... -.+++.+++.+. +.|. .....+. .|...+..+|..++|-.++..-+ ..++
T Consensus 149 sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~----~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 149 SVISLILQSIFSENELLDPILLALAEKMVQKLLE----KKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred HHHHHHHHhccCCcccccchhHHHHHHHHHHHhc----cCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 75332222111 112333333221 1111 1122233 56667778899999999984333 3344
Q ss_pred CCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005817 613 PGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (676)
Q Consensus 613 ~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~ 663 (676)
.+..+-....+|-...+ ...+.-++-.+++...+++ |..|.+
T Consensus 224 ~~~~l~~~~~dllk~l~------~w~~l~~l~~~Ll~k~~Dd---y~~~~~ 265 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLN------RWQELFELSSRLLEKGNDD---YKIYTD 265 (932)
T ss_pred cchHHHHHHHHHHHHhc------ChHHHHHHHHHHHHhCCcc---hHHHHH
Confidence 44445445555554444 3334434444444443333 777666
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.26 E-value=0.25 Score=54.80 Aligned_cols=152 Identities=10% Similarity=-0.010 Sum_probs=101.3
Q ss_pred hcCCCchhHHHHHHHHHHHhccc--CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHH
Q 005817 321 EALPSSFNLRQRFFEIVEATNLA--QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQ 398 (676)
Q Consensus 321 ~~~p~~~~~~~~~~~~~~~fe~~--~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~ 398 (676)
...|.+.+.|..++.....+... .....+...++++++..|+...+|-.++..+.-..... + .....+..+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-~----~~~~~l~~a~~ 405 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-P----LDEKQLAALST 405 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-C----ccHHHHHHHHH
Confidence 44577767776665544332211 13457888999999999999888777665443211110 0 00234566777
Q ss_pred HHHHHhhc--cCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc
Q 005817 399 VYEEALKN--VPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL 475 (676)
Q Consensus 399 ~ye~al~~--~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~ 475 (676)
..++++.. .+.. ..+....- ... ..|+++.|...|++|+..+| +...|...+.++...
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~--~~~----------------~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~ 466 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAV--QAL----------------VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK 466 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHH--HHH----------------hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 77776553 2222 23322211 111 13679999999999999999 577899999999999
Q ss_pred CCHHHHHHHHHHHhhccCCChH
Q 005817 476 GKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 476 ~~~~~A~~l~~~al~~~~P~~~ 497 (676)
|+.++|...|++|+ ...|..+
T Consensus 467 G~~~eA~~~~~~A~-~L~P~~p 487 (517)
T PRK10153 467 GDNRLAADAYSTAF-NLRPGEN 487 (517)
T ss_pred CCHHHHHHHHHHHH-hcCCCCc
Confidence 99999999999999 8888865
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=1.6 Score=44.39 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 156 GDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 156 ~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~ 235 (676)
++.++|+.|..|-.. +++++..+|.-+.+..-...++|+..|--.+ -.|.+..|.++..+| |+++---...+.+
T Consensus 57 ~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka----~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKA----PKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhC----CCChHHHHHHHHH
Confidence 467788887777331 2567788888777755555677777665443 345677777666654 4443111111111
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhH----HHhhhHH
Q 005817 236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLF----REQGLRV 311 (676)
Q Consensus 236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 311 (676)
.... . +++.|. .+.+. + .|..++++.+- ....++.
T Consensus 131 ahkl----n--------------------dEk~~~--------~fh~~--------L-qD~~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 131 AHKL----N--------------------DEKRIL--------TFHSS--------L-QDTLEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHh----C--------------------cHHHHH--------HHHHH--------H-hhhHHHHHhHHHHHHHHHHHHH
Confidence 1111 0 111111 00000 0 00011221111 1235788
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR 372 (676)
Q Consensus 312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~ 372 (676)
|..||++.+.-.|+-..+-..+.-.|.+.. -++....++.--++.+|+++.+-...|-
T Consensus 170 AIdvYkrvL~dn~ey~alNVy~ALCyyKlD---Yydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 170 AIDVYKRVLQDNPEYIALNVYMALCYYKLD---YYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHhcc---hhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999998877764332222212233332 4567888999999999999877555543
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.15 E-value=0.075 Score=49.80 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=59.3
Q ss_pred hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH 442 (676)
Q Consensus 364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 442 (676)
...+..+|..+.. .+++++|...|+++++..|... ....+...-.-.. ..|
T Consensus 35 a~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~---------------~~g 86 (172)
T PRK02603 35 AFVYYRDGMSAQA-------------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA---------------SNG 86 (172)
T ss_pred HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---------------HcC
Confidence 3345566666644 4789999999999998655321 1112211111111 147
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 005817 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK 477 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~ 477 (676)
.++.|...|++++...|.+...+..++..+...|+
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 78999999999999999999988888888887776
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.11 E-value=0.0076 Score=39.44 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=30.5
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817 451 YEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (676)
Q Consensus 451 ye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~ 482 (676)
|++|++.+|.+++.|..++.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999986
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.35 Score=50.14 Aligned_cols=167 Identities=13% Similarity=-0.026 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh-h
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE-S 542 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~-~ 542 (676)
.-+.-++.+...|++++|.++.-..+ +..+++.+-...+..+.-.. .+.+.+...|+++|+.-|... +
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~il-kld~~n~~al~vrg~~~yy~----------~~~~ka~~hf~qal~ldpdh~~s 239 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDIL-KLDATNAEALYVRGLCLYYN----------DNADKAINHFQQALRLDPDHQKS 239 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHH-hcccchhHHHHhcccccccc----------cchHHHHHHHhhhhccChhhhhH
Confidence 33445777788899999999888888 77777765444333222211 157788888999998655322 2
Q ss_pred HHHHHHHHHHHHhh----------h--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHH---HHHhcCHHHHHHHHHHH
Q 005817 543 ESLWLMALKFFMNQ----------K--HYFDKLVEIALISVAKDGGGESGFSLPSAIINL---VIQKDGIQQAREMYKRF 607 (676)
Q Consensus 543 ~~lW~~~l~~~~~~----------~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~---~~~~g~~~~Ar~iy~~a 607 (676)
..... ..+.++.. + ..+...|..|+. +.|.. .......|..- ..++|...+|..--+.+
T Consensus 240 k~~~~-~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~-idP~n----~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 240 KSASM-MPKKLEVKKERGNDAFKNGNYRKAYECYTEALN-IDPSN----KKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HhHhh-hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc-CCccc----cchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 22111 11222111 1 122334444543 34443 33444456543 45688889988888888
Q ss_pred HcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817 608 LALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (676)
Q Consensus 608 l~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~ 653 (676)
+.+.+.-.+-++.-+.-...++ +++.|..-|++|.+...+
T Consensus 314 l~iD~syikall~ra~c~l~le------~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALE------KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhccc
Confidence 8877655554443333333334 778999999999997543
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.99 E-value=0.1 Score=45.40 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---hHHHHHHHHHHHHHhcccc
Q 005817 441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---SVQLWLLRISVEIRCVTRN 514 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~---~~~lW~~~i~l~~~~~~~~ 514 (676)
.|..++|...|++++..++.. ...++.++..+...|++++|..++++++ ..+|+ +..++..++......|.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~~p~~~~~~~l~~f~Al~L~~~gr-- 90 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EEFPDDELNAALRVFLALALYNLGR-- 90 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCccccHHHHHHHHHHHHHCCC--
Confidence 477899999999999986554 4689999999999999999999999999 88898 77788777766655553
Q ss_pred CCCCChhchHHHHHHHHHHH
Q 005817 515 SFSPSKADILSIFELLKCIL 534 (676)
Q Consensus 515 ~~~p~~~~~~~~~~~f~~Al 534 (676)
.+++.+.+-.++
T Consensus 91 --------~~eAl~~~l~~l 102 (120)
T PF12688_consen 91 --------PKEALEWLLEAL 102 (120)
T ss_pred --------HHHHHHHHHHHH
Confidence 455555555554
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.94 E-value=0.13 Score=47.84 Aligned_cols=100 Identities=11% Similarity=0.003 Sum_probs=67.3
Q ss_pred hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSH 439 (676)
Q Consensus 364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~ 439 (676)
...|..++..... .++++.|...|++++...+... .|........
T Consensus 35 a~~~~~~g~~~~~-------------~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~------------------ 83 (168)
T CHL00033 35 AFTYYRDGMSAQS-------------EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT------------------ 83 (168)
T ss_pred HHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH------------------
Confidence 3456677776654 4779999999999987755321 2222211111
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-------hcCCHHHH-------HHHHHHHhhccCCC
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL-------QLGKLDEA-------RKLAAKLCSGKLSD 495 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~-------~~~~~~~A-------~~l~~~al~~~~P~ 495 (676)
..|..+.|+..|++++..+|.....+...+.++. ..|+++.| ..++++++ ...|.
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~-~~~p~ 152 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI-ALAPG 152 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH-HhCcc
Confidence 1467899999999999999988887777777776 77777644 44555555 45553
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.80 E-value=0.83 Score=44.04 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHhcCCCC---hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHH---
Q 005817 345 SDDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLY--- 416 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~---~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y--- 416 (676)
.+..+...++.++..+|.+ +.+.+.+|..+.. .++++.|+..|++-++..|+.. -+-.|
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-------------~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-------------QGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-------------TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 4556666666666666665 3345555555544 3566777777777777666543 11111
Q ss_pred -HHHHHHHhc-CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHhcCC
Q 005817 417 -TKFLMDMIA-PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-----------------IAHRYVTLYLQLGK 477 (676)
Q Consensus 417 -~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~-----------------lw~~~~~l~~~~~~ 477 (676)
+.+....-. ....| ++...+|...|+..+...|.++- --+.-+.++.+.|.
T Consensus 87 ~~~~~~~~~~~~~~~D----------~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRD----------QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHHHHHH-TT-------------HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhCccchhcccC----------hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 111110000 00111 35567888888888888887521 12234777888999
Q ss_pred HHHHHHHHHHHhhccCCChH
Q 005817 478 LDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 478 ~~~A~~l~~~al~~~~P~~~ 497 (676)
+..|..-++.++ +.+|++.
T Consensus 157 y~aA~~r~~~v~-~~yp~t~ 175 (203)
T PF13525_consen 157 YKAAIIRFQYVI-ENYPDTP 175 (203)
T ss_dssp HHHHHHHHHHHH-HHSTTSH
T ss_pred HHHHHHHHHHHH-HHCCCCc
Confidence 999999999999 8999875
No 175
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.76 E-value=0.43 Score=48.72 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.++++.|...++..-+...... +...|+.+... .+.+..|.-+|+......+.++.+..
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g------------------~e~~~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG------------------GEKYQDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT------------------TTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC------------------chhHHHHHHHHHHHHhccCCCHHHHH
Confidence 4789999999988755433322 44555544432 12467899999998777778899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
..+...+..|++++|..++.+++ ...|++++.....|-+....|.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al-~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEAL-EKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHC-CC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 8899999999888887776664
No 176
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=4.3 Score=44.33 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
+.++.|...++ ..++.++.+-...++.+-+++++++|.++|+..+ ++.-+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~d 142 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA-KNNSD 142 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCc
Confidence 34667777776 4456677788889999999999999999999998 54443
No 177
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.31 Score=50.54 Aligned_cols=124 Identities=12% Similarity=-0.011 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHhhccCchh-------------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-------------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~ 456 (676)
.+++..|..-|++|+..++... .-..++++..-. ...+.+..|....++++.
T Consensus 221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~---------------lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY---------------LKLKEYKEAIESCNKVLE 285 (397)
T ss_pred hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH---------------HhhhhHHHHHHHHHHHHh
Confidence 4678899999999998765211 111222222211 124567899999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
.+|.++...+.-++-++..|.++.|+..+++++ +..|.|..+-...+.+-.+... ..++-+++|.+.+..
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~l~~k~~~---------~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIKLKQKIRE---------YEEKEKKMYANMFAK 355 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999 8999998888888777665432 234456677777765
Q ss_pred cC
Q 005817 537 VS 538 (676)
Q Consensus 537 ~~ 538 (676)
.+
T Consensus 356 ~~ 357 (397)
T KOG0543|consen 356 LA 357 (397)
T ss_pred cc
Confidence 43
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.46 E-value=0.14 Score=48.00 Aligned_cols=70 Identities=13% Similarity=-0.028 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
.|+++.|...|++++...|.. ...|..++..+...|++++|...+.+++ ...|.+...|..+..+....+
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-ELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC
Confidence 367899999999999876543 4689999999999999999999999999 889998888888777766544
No 179
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.35 E-value=4.2 Score=42.25 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHhcCCCChhh-HHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVDPKY-WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDM 423 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~-w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~ 423 (676)
.+..++..+.+..+.- +.|.+ ++.-|+..- ..++.+++-....++-+.-++..+ ..++....-.
T Consensus 99 ~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~-------------qrgd~~~an~yL~eaae~~~~~~l-~v~ltrarll 163 (400)
T COG3071 99 DFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQ-------------QRGDEDRANRYLAEAAELAGDDTL-AVELTRARLL 163 (400)
T ss_pred cHHHHHHHHHHhhhcC-cchHHHHHHHHHHHH-------------hcccHHHHHHHHHHHhccCCCchH-HHHHHHHHHH
Confidence 4566666666643333 33444 333333321 257788888888888765333332 1222222222
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCS 490 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~ 490 (676)
+ .++++..|+.-...++...|..+.+-.--.+.+.+.|++.....++.+.-+
T Consensus 164 l---------------~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 164 L---------------NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred H---------------hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2 146688999999999999999999999999999999999999998888773
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.34 E-value=1.7 Score=41.34 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=31.6
Q ss_pred hhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHh
Q 005817 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI 424 (676)
Q Consensus 365 ~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~ 424 (676)
++++.+|+.++. .|.++.|...|+-|+...--+-+=-.|+-++...+
T Consensus 238 EtyFYL~K~~l~-------------~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l 284 (297)
T COG4785 238 ETYFYLGKYYLS-------------LGDLDEATALFKLAVANNVYNFVEHRYALLELSLL 284 (297)
T ss_pred HHHHHHHHHHhc-------------cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 457888998876 57899999999999865332222234555665443
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.31 E-value=0.028 Score=36.76 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 005817 180 LAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR 212 (676)
Q Consensus 180 ~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar 212 (676)
|++||..+|+++..|..++.+.. ..|+.+.|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 67888888888888888888875 677888775
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.24 E-value=3.1 Score=40.07 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=42.7
Q ss_pred HHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 169 RQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 169 ~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
...| +..+.+.|++.+..+|.+ ++.++..+.-.+ ..|+...|...|++.++.+|+++.
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3444 578999999999999986 355555555555 578999999999999999999864
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.15 E-value=3.2 Score=41.20 Aligned_cols=153 Identities=8% Similarity=-0.020 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH---HHHHHHHHHHHHhcc---
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDI---AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV---QLWLLRISVEIRCVT--- 512 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~l---w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~---~lW~~~i~l~~~~~~--- 512 (676)
|++++|...|+..+...|.++.. .+..+..+.+.+++++|...+++.+ +.+|+++ ..+...+......+.
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi-~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 67899999999999999987533 3555666678999999999999999 8889764 333333322111110
Q ss_pred --ccCCCC---ChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHH
Q 005817 513 --RNSFSP---SKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAI 587 (676)
Q Consensus 513 --~~~~~p---~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y 587 (676)
.....+ |......+.+.|++-++..|.+...+ .+...+..+-++ +... .+ .-
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~----------~A~~rl~~l~~~----la~~-------e~--~i 181 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT----------DATKRLVFLKDR----LAKY-------EL--SV 181 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH----------HHHHHHHHHHHH----HHHH-------HH--HH
Confidence 000000 11123456678888888888654221 111111111111 1000 11 23
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 005817 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLY 618 (676)
Q Consensus 588 ~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~ 618 (676)
+.|..+.|.+..|..=++.++...|.+...-
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ 212 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATR 212 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHH
Confidence 4567778899999999999998877765533
No 184
>PRK11906 transcriptional regulator; Provisional
Probab=95.09 E-value=1.8 Score=46.17 Aligned_cols=128 Identities=12% Similarity=0.020 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHH---hcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHH
Q 005817 346 DDMHDKILSDMQ---RDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMD 422 (676)
Q Consensus 346 ~~~a~~il~~~~---~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~ 422 (676)
.+.+..++.+++ ...|+....+..+|.-++...... -.+.......|...-++|++..+.+..-..-+.+...
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g----~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHG----KSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346777899999 888888777776665544321000 0012356778888999999887765521111122111
Q ss_pred HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
. .+..+.+...|++|+..+|.....|...+-+..-.|+.++|+...++|+ +..|.
T Consensus 350 ~-----------------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al-rLsP~ 404 (458)
T PRK11906 350 L-----------------SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL-QLEPR 404 (458)
T ss_pred h-----------------hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCch
Confidence 1 2447899999999999999999999999999999999999999999999 88886
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.88 E-value=1.7 Score=44.32 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCC------CH-HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 586 AIINLVIQKDGIQQAREMYKRFLALPRP------GL-VLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 586 ~y~~~~~~~g~~~~Ar~iy~~al~~~p~------~~-~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
..+.+..+.|++++|.++|++....+-. +. .++...+-+-...+ ++..|+..|++..+.+|
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~------D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMG------DYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhhCC
Confidence 4567788899999999999999764311 11 24555555555666 88999999999998877
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=0.49 Score=46.69 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 442 HYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~---p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
|+++.|..+|..++... |..|+..+..+..+.+.|+.++|..++++.+ +.+|+...
T Consensus 192 g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~-k~YP~t~a 250 (262)
T COG1729 192 GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI-KRYPGTDA 250 (262)
T ss_pred ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHCCCCHH
Confidence 33444444555544443 3446778888888888888888888888888 77887643
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.66 E-value=0.64 Score=40.45 Aligned_cols=85 Identities=15% Similarity=0.022 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHHhhccCch-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC---cHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSS-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL---TEDIA 465 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~---~~~lw 465 (676)
.|+.++|+..|++++..-.+. ..-..++..-...- ..|.+++|..+++.++...|. +..+.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr---------------~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR---------------NLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 578999999999999864332 22233333322111 147899999999999998887 77888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
..++-.+...|+.++|...+-.++
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889989999999999998888777
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=3.5 Score=42.06 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHhhccC----chhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 391 SQMQKAIQVYEEALKNVP----SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~----~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.++.-|+..++-.+..-. ...+|..|..|.. |++++|..+|+.+...+-.+.++|.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL--------------------gdY~~Al~~Y~~~~~~~~~~~el~v 95 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL--------------------GDYEEALNVYTFLMNKDDAPAELGV 95 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh--------------------ccHHHHHHHHHHHhccCCCCcccch
Confidence 345666666665553211 1228888776654 5689999999998887555677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al 489 (676)
..+-..--.|.+.+|..+..++-
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCC
Confidence 88777767788999887766643
No 189
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.56 E-value=0.1 Score=33.70 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817 191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 191 ~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
+.+|...+...+ ..|+++.|+..|+++++.+|++
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 467888888886 6889999999999999999974
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.43 E-value=5.8 Score=39.38 Aligned_cols=47 Identities=19% Similarity=-0.007 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817 442 HYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~a 488 (676)
|.+..|..-++..+...|.+ ++.....+.-+...|..++|.++....
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45667777788888877765 445555666677788888887665543
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=94.04 E-value=0.34 Score=44.18 Aligned_cols=84 Identities=7% Similarity=0.024 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|..+|.-.+...|.+.+.|+-++..+...+ +.+|...|..|..+.+++|..-...+.-.+ ..|+...|+..|+-+
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l-~l~~~~~A~~~f~~a 131 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL-LMRKAAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH-HhCCHHHHHHHHHHH
Confidence 567889999999999999999999998887666 689999999999999999998888888776 678999999999999
Q ss_pred HHhCCCC
Q 005817 219 LRVCPTS 225 (676)
Q Consensus 219 l~~~p~~ 225 (676)
+. .|..
T Consensus 132 ~~-~~~~ 137 (165)
T PRK15331 132 NE-RTED 137 (165)
T ss_pred Hh-Ccch
Confidence 98 4553
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.00 E-value=0.45 Score=42.39 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhhccCchh------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~ 463 (676)
.++++.|++.|+......|... ++..|+.+.. ++++.|+..|++-+..+|.++.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--------------------~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--------------------GDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--------------------cCHHHHHHHHHHHHHhCCCCCC
Confidence 4789999999999998888532 6777665543 5689999999999999999865
Q ss_pred H-HHHH----HHHHHhc-------------CCHHHHHHHHHHHhhccCCChH
Q 005817 464 I-AHRY----VTLYLQL-------------GKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 464 l-w~~~----~~l~~~~-------------~~~~~A~~l~~~al~~~~P~~~ 497 (676)
+ |..| +.+.... +....|+.-+++.+ ..+|+|.
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv-~~yP~S~ 133 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLV-RRYPNSE 133 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHH-HHCcCCh
Confidence 3 2222 2222211 12566788888888 7888874
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.94 E-value=0.93 Score=46.30 Aligned_cols=166 Identities=16% Similarity=0.027 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~ 541 (676)
+-+.+.-+.++...|++++|++++.++ .+.+.-...+++..+.+ .++.+.+.++..-+.-....
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~----------R~dlA~k~l~~~~~~~eD~~ 165 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMN----------RPDLAEKELKNMQQIDEDSI 165 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHCCSCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCcHH
Confidence 333444455555667777766544332 34555566666666554 35666666666543222111
Q ss_pred hHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHH
Q 005817 542 SESLWLMALKFFMNQ--KHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ 619 (676)
Q Consensus 542 ~~~lW~~~l~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~ 619 (676)
-..+...|+...... ....-.+|+... ...+ ..+.+....+-.....|++++|.++++.++...|.++....
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~----~~~~--~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELS----DKFG--STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHH----CCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHH----hccC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 233444444433221 122333344322 1111 11222223344455677788888877777777777777666
Q ss_pred HHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCC
Q 005817 620 NCIELENNLASVGDKDSLVNARKLFESALATYDQN 654 (676)
Q Consensus 620 ~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~ 654 (676)
..|-+...+|. ..+.+.......-..+|++
T Consensus 240 Nliv~~~~~gk-----~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 240 NLIVCSLHLGK-----PTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHTT------TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhCC-----ChhHHHHHHHHHHHhCCCC
Confidence 66666555551 2355666666666666654
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.87 E-value=15 Score=42.19 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh-hHHHHHHHhccccCCCCCCCc
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK-YWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~-~w~~la~~~~~~~~~~~~~~~ 386 (676)
..+.|..+|++|++..|. .++...+|..+.+-. .+...+++==++-+.+|.++- +|....-......+. .+.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~---~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~-~~~-- 164 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREK---SYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSE-NEL-- 164 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCC-ccc--
Confidence 345566666666666666 455555555554421 233344444444556666643 354433322211000 000
Q ss_pred CcchhHHHHHHHHHHHHhhcc-C--chhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc--CCCc
Q 005817 387 DIVPSQMQKAIQVYEEALKNV-P--SSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM--GCLT 461 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~-~--~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~--~p~~ 461 (676)
...--+.-|....++.++.- + +..-...|...... ++..++|..++..-+.. .+.+
T Consensus 165 -~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~------------------~~k~~eal~~l~~~la~~l~~~~ 225 (932)
T KOG2053|consen 165 -LDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL------------------QGKYQEALEFLAITLAEKLTSAN 225 (932)
T ss_pred -ccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh------------------cccHHHHHHHHHHHHHHhccccc
Confidence 00011233444444444433 1 11122333333222 24466666666433322 2223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
+.+-..-.+++...+++.+...+..+++ ...|++
T Consensus 226 ~~l~~~~~dllk~l~~w~~l~~l~~~Ll-~k~~Dd 259 (932)
T KOG2053|consen 226 LYLENKKLDLLKLLNRWQELFELSSRLL-EKGNDD 259 (932)
T ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHH-HhCCcc
Confidence 4444456667777777777777777777 666665
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=1.3 Score=46.12 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIE---------------LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~---------------lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~ 203 (676)
...|..-|+||+..+..+.. +.++.+--+.+.+ +..+.....++|...|+++..-+.-++-.+
T Consensus 224 ~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l- 302 (397)
T KOG0543|consen 224 FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL- 302 (397)
T ss_pred HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-
Confidence 56788899999887763221 1222222223333 567899999999999999998888888776
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005817 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY 239 (676)
Q Consensus 204 ~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~ 239 (676)
..|+++.||..|+++++..|.+..+=.+++++-...
T Consensus 303 ~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 303 ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 577999999999999999999999999988876543
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.59 E-value=6.2 Score=36.74 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh--
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL-- 540 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~-- 540 (676)
.--...+.-+.+.|++.+|+..|+++++..+-++..+..-+++.....++ ...+..++++-...-|..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~----------~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE----------FAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc----------HHHHHHHHHHHhhcCCccCC
Confidence 34556677788999999999999999988899998888887766655442 455656666655543221
Q ss_pred -hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH----HHHHHHHcCCCC
Q 005817 541 -ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR----EMYKRFLALPRP 613 (676)
Q Consensus 541 -~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar----~iy~~al~~~p~ 613 (676)
+..-+ +...+...+ ...+..|+.++.+. |. +.-...|..|+.++|..++|+ .+++.+.+..|.
T Consensus 160 pd~~Ll---~aR~laa~g~~a~Aesafe~a~~~y-pg------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 160 PDGHLL---FARTLAAQGKYADAESAFEVAISYY-PG------PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred CCchHH---HHHHHHhcCCchhHHHHHHHHHHhC-CC------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 11111 112222221 34677777776532 32 233346888888887665544 445555544443
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.56 E-value=1.5 Score=39.20 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=50.0
Q ss_pred CchHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKV-----PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~-----~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
+..+.+.|+.....+|.. .+||+.++.+. .+++..|...++|-++.||+|+.+=..+...-+
T Consensus 26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~---~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK---QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 678999999999999974 47888888874 679999999999999999999875444443333
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.53 E-value=0.36 Score=51.22 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDI---AHRYVTLYLQLGKLDEARKLAAKLCSGK 492 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~l---w~~~~~l~~~~~~~~~A~~l~~~al~~~ 492 (676)
..+.++.|...|++|+..+|.+.+. |...+..+...|++++|+..+++|+ ..
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL-el 141 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL-RD 141 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh
Confidence 4577899999999999999998754 8888999999999999999999999 54
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=93.53 E-value=0.95 Score=41.37 Aligned_cols=85 Identities=7% Similarity=-0.001 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
+|+++.|..+|.-....+|.+++.|+.++..+...++++.|...|..|. ...++++.-.....+.....+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~~~dp~p~f~agqC~l~l~--------- 119 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLLKNDYRPVFFTGQCQLLMR--------- 119 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcccCCCCccchHHHHHHHhC---------
Confidence 4789999999999999999999999999999999999999999999998 665666555555555555555
Q ss_pred hchHHHHHHHHHHHhh
Q 005817 521 ADILSIFELLKCILTK 536 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~ 536 (676)
+.+.+++.|+.++..
T Consensus 120 -~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 -KAAKARQCFELVNER 134 (165)
T ss_pred -CHHHHHHHHHHHHhC
Confidence 478888889999874
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.49 E-value=0.33 Score=51.52 Aligned_cols=69 Identities=9% Similarity=-0.063 Sum_probs=61.7
Q ss_pred hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817 153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGV---WIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~l---W~~~a~~e~~~~~~~~~Ar~~~~ral~~~ 222 (676)
..|++...|..+...+.+.| ++.+...|+++|.++|+++.. |...+.... ..|+++.|...|++|+...
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence 58999999999999988887 689999999999999999854 888888775 7899999999999999973
No 201
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.28 E-value=12 Score=42.61 Aligned_cols=125 Identities=15% Similarity=0.064 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~ 521 (676)
|-++.|..+|.++-..+ ..-.++...|..++|.++.+.-- +.+ -..-+..|+......+
T Consensus 814 gMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~D-RiH--Lr~Tyy~yA~~Lear~---------- 872 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKD-RIH--LRNTYYNYAKYLEARR---------- 872 (1416)
T ss_pred hhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcc-cee--hhhhHHHHHHHHHhhc----------
Confidence 55778888888755432 23456677788888887766533 222 2234555665544333
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH
Q 005817 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar 601 (676)
|++.+.+.|+++= ++ +..+..+..++. ..++.-..+ . . -+.++.+|.+++...|+.+.|.
T Consensus 873 Di~~AleyyEK~~--~h---afev~rmL~e~p----~~~e~Yv~~----~--~-----d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 873 DIEAALEYYEKAG--VH---AFEVFRMLKEYP----KQIEQYVRR----K--R-----DESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cHHHHHHHHHhcC--Ch---HHHHHHHHHhCh----HHHHHHHHh----c--c-----chHHHHHHHHHHhcccchHHHH
Confidence 5777777777762 22 122333322211 111111111 0 1 1245557777777778888888
Q ss_pred HHHHHH
Q 005817 602 EMYKRF 607 (676)
Q Consensus 602 ~iy~~a 607 (676)
..|..|
T Consensus 933 ~~Y~~A 938 (1416)
T KOG3617|consen 933 SFYSSA 938 (1416)
T ss_pred HHHHHh
Confidence 888777
No 202
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.96 E-value=2.3 Score=39.44 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 208 VTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 208 ~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
++.|..-|+.||+++|+..+....+..-..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 667888999999999987665555554433
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.95 E-value=1.2 Score=41.32 Aligned_cols=96 Identities=10% Similarity=0.002 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----c------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQR-----K------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH--- 204 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~-----~------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~--- 204 (676)
.+++++..|+.....+|.|.+.+.++.-.+... + ...+..-|+.||.++|+..+.....+.-..+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999888877665432 1 24567889999999999765443333322111
Q ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 205 -------NLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 205 -------~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~ 235 (676)
...++.|...|++|+...|++ +++..-+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~ 122 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEM 122 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHH
Confidence 124778999999999999997 444444433
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.92 E-value=0.2 Score=32.21 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
++.|...+..+...|++++|+..+++++ ...|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al-~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL-ELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHCcCC
Confidence 4678999999999999999999999999 888864
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.64 E-value=7.9 Score=39.41 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC------hhhHHHHHHHhccc
Q 005817 307 QGLRVLQTIYSGAVEA---LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD------PKYWDWLARLKMTD 377 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~---~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~------~~~w~~la~~~~~~ 377 (676)
++++.|...|.+|... ..+.......+.+....+... ....+...+++++..+-.. ......+|..+...
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQ 127 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCT
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4567777777777643 222222223333332222222 4556677777776654322 23455666666431
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
.++++.|++.|++|+....... .....+.+... .++++.|..+
T Consensus 128 ------------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~------------------l~~y~~A~~~ 177 (282)
T PF14938_consen 128 ------------LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR------------------LGRYEEAIEI 177 (282)
T ss_dssp ------------T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH------------------TT-HHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH------------------hCCHHHHHHH
Confidence 2689999999999998543211 22222333222 3679999999
Q ss_pred HHHHHHcC---CC-c---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 451 YEKAEAMG---CL-T---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 451 ye~al~~~---p~-~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
|++..... +. . .+.++.-+-..+..|++..|...+++.. ..+|.
T Consensus 178 ~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~-~~~~~ 228 (282)
T PF14938_consen 178 YEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC-SQDPS 228 (282)
T ss_dssp HHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG-TTSTT
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence 99988752 22 1 2466777777788899999999999998 77774
No 206
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.48 E-value=1.6 Score=40.90 Aligned_cols=88 Identities=14% Similarity=-0.011 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccC
Q 005817 441 EHYISHLLTVYEKAEAMGCLTED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNS 515 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~-----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~ 515 (676)
.|.++.|..-|..|+...|..+. +|..-+...++.+..+.|+.-+.+|+ ..+|.......+++.++.+..
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai-el~pty~kAl~RRAeayek~e---- 182 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI-ELNPTYEKALERRAEAYEKME---- 182 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH-hcCchhHHHHHHHHHHHHhhh----
Confidence 36799999999999999887542 56667777889999999999999999 999999888888888887664
Q ss_pred CCCChhchHHHHHHHHHHHhhcCh
Q 005817 516 FSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 516 ~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
.++.+.+=|.+.+...|.
T Consensus 183 ------k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 ------KYEEALEDYKKILESDPS 200 (271)
T ss_pred ------hHHHHHHHHHHHHHhCcc
Confidence 256666666776666554
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.44 E-value=15 Score=36.11 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=108.2
Q ss_pred hhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHH-HHHhcccCcHHHHHHHHHHHHhcCCCChhh-HHHH--HHHhc
Q 005817 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEI-VEATNLAQSDDMHDKILSDMQRDFLVDPKY-WDWL--ARLKM 375 (676)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~-~~~fe~~~~~~~a~~il~~~~~~~p~~~~~-w~~l--a~~~~ 375 (676)
....+..|+++.|...|+......|.+.-.-...++. ++.+. .+.+..+...+++-++.+|+++.+ |..+ +...+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 3444556789999999999998888875444444443 33333 236789999999999999999775 4333 22222
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh------HHHHH-----HHHHHHHhcCccccccCCCCChhhhhhH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM------IFDLY-----TKFLMDMIAPKKEETRDSELPSHVEHYI 444 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~------lw~~y-----~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 444 (676)
...... .--+.....|..-|++-|+.-|+++ .-..+ +..++..... ....|..
T Consensus 120 ~~i~~~-----~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary-----------Y~kr~~~ 183 (254)
T COG4105 120 FQIDDV-----TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY-----------YLKRGAY 183 (254)
T ss_pred ccCCcc-----ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHhcCh
Confidence 211100 0013455678888899999888754 11111 1112111000 0112445
Q ss_pred HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817 445 SHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL 502 (676)
Q Consensus 445 ~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (676)
..|..-++..++..|.+ .+-...+.+.+...|-.++|.+.-.-.- .+.|++. |..
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~p~s~--~~~ 241 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANYPDSQ--WYK 241 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCCCc--chh
Confidence 56666667777765554 3445556666777888888876554444 6788876 544
No 208
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=91.37 E-value=4.1 Score=35.65 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=66.9
Q ss_pred HHHHHHHHHH-hhcChhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817 525 SIFELLKCIL-TKVSALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (676)
Q Consensus 525 ~~~~~f~~Al-~~~~~~~~~~lW~~~l~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~ 597 (676)
..++.|+..| ..-..++.+..|..|+.+.+.+- ..+..+++++++.+.....-.+-+-....++.+.- ..
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~---~~ 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYAD---NC 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHH---hc
Confidence 3456678887 43445566888999888776432 24566777777654322211011111122233322 23
Q ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHH
Q 005817 598 QQAREMYKRFLAL--PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFES 646 (676)
Q Consensus 598 ~~Ar~iy~~al~~--~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~ 646 (676)
+.++.+|.-+.+. ......+|..++.+-...+ +...|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g------~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAG------RYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC------CHHHHHHHHHc
Confidence 4478888877543 2334558888888766777 89999999975
No 209
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.92 E-value=0.48 Score=47.12 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
+|+.++|..+|+.|+...|.++++.+.++.|....+++-+|...|-+|+ ...|.+.+....+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL-tisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL-TISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee-eeCCCchHHHhhhh
Confidence 4789999999999999999999999999999999999999999999999 88898776655543
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.87 E-value=1.7 Score=42.99 Aligned_cols=96 Identities=13% Similarity=0.154 Sum_probs=71.3
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCCh---hhHH
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSS-----FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP---KYWD 368 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~-----~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~---~~w~ 368 (676)
+.....++-.+++..|...|...++.-|++ ..||+- +. .|. .+.+..+..++..+.+.+|+++ +..+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLG--e~--~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLG--ES--LYA-QGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHH--HH--HHh-cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 455556666678999999999999988775 355532 11 122 2467889999999999999884 5566
Q ss_pred HHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch
Q 005817 369 WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS 410 (676)
Q Consensus 369 ~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~ 410 (676)
.++..... .++.+.|+.+|++.++.-|+.
T Consensus 220 Klg~~~~~-------------l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 KLGVSLGR-------------LGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHH-------------hcCHHHHHHHHHHHHHHCCCC
Confidence 77766543 577899999999999998864
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.64 E-value=19 Score=35.58 Aligned_cols=184 Identities=10% Similarity=0.077 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-HHHHHHHHHHHHhccccCC
Q 005817 441 EHYISHLLTVYEKAEAMGCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-QLWLLRISVEIRCVTRNSF 516 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-~lW~~~i~l~~~~~~~~~~ 516 (676)
.|++++|...|+.....+|.+ +..-+..+.-..+.++++.|+...++-+ +.+|+++ .-|..|+.........+..
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi-~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI-RLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 377999999999999887775 4555666666668999999999999999 8999864 3355555444432211111
Q ss_pred CCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcC
Q 005817 517 SPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDG 596 (676)
Q Consensus 517 ~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~ 596 (676)
+-+......+..-|+.-+...|.+.-..-=...+.++ . . .+... . ..-+.|..+.|.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~-------~---d----~LA~~-------E--m~IaryY~kr~~ 182 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL-------N---D----ALAGH-------E--MAIARYYLKRGA 182 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH-------H---H----HHHHH-------H--HHHHHHHHHhcC
Confidence 1111224456666777777777653111000001111 0 0 01110 1 123566777778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 597 IQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 597 ~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
...|..=++.+++..|...........|+...... .+..-++-..+.|..+.
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~l----gl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYAL----GLTDEAKKTAKVLGANY 234 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh----CChHHHHHHHHHHHhcC
Confidence 88887778888877666555444444443322111 23455555566666654
No 212
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.37 E-value=15 Score=34.25 Aligned_cols=127 Identities=14% Similarity=0.041 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHh-cCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQR-DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFL 420 (676)
Q Consensus 345 ~~~~a~~il~~~~~-~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~ 420 (676)
.+..+...|.+.+. .|.+++.+..-+|+..+. .+++-.|..++++..+..|.- .--..|....
T Consensus 104 r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-------------~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 104 RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-------------IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-------------hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 46678888877655 688888888888877654 356778888888888766531 1222333333
Q ss_pred HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHH----HHHHHHHhhccCCCh
Q 005817 421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEA----RKLAAKLCSGKLSDS 496 (676)
Q Consensus 421 ~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A----~~l~~~al~~~~P~~ 496 (676)
-. +|.+..|+..|+.+++..| .+..-+.|+.|+.++|...+| ..+.+.+. +..|+.
T Consensus 171 aa------------------~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~-r~~~H~ 230 (251)
T COG4700 171 AA------------------QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDTAK-RSRPHY 230 (251)
T ss_pred Hh------------------cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH-hcchhH
Confidence 22 4677889999999999855 577889999999999976665 45566666 556654
Q ss_pred HHHHHHHH
Q 005817 497 VQLWLLRI 504 (676)
Q Consensus 497 ~~lW~~~i 504 (676)
-+-...|+
T Consensus 231 rkh~reW~ 238 (251)
T COG4700 231 RKHHREWI 238 (251)
T ss_pred HHHHHHHH
Confidence 43333333
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.30 E-value=49 Score=39.87 Aligned_cols=300 Identities=13% Similarity=0.075 Sum_probs=152.5
Q ss_pred hhhHHHHHHHHHHHhcCCC-----chhHHHHHHHHHHH-hcccCcHHHHHHHHHHHHhcCCCChh-----hHHHHHHHhc
Q 005817 307 QGLRVLQTIYSGAVEALPS-----SFNLRQRFFEIVEA-TNLAQSDDMHDKILSDMQRDFLVDPK-----YWDWLARLKM 375 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~-----~~~~~~~~~~~~~~-fe~~~~~~~a~~il~~~~~~~p~~~~-----~w~~la~~~~ 375 (676)
++++.+...+..+....+. .........-.... +-..+..+.+...+++++...|.... .+..++....
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 4567777788777655432 11111111111110 11123567788888888776555421 1233333332
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
. .++++.|...+++++..... ...+..+......... ...|+++.|...+++
T Consensus 503 ~-------------~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~-------------~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 503 C-------------KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL-------------FAQGFLQAAYETQEK 556 (903)
T ss_pred H-------------cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHH
Confidence 2 57889999999999865332 1111111111111100 024778888888888
Q ss_pred HHHc-----CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC----C-hHHHHHHHHHHHHHhccccCCCCCh
Q 005817 454 AEAM-----GCL---TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS----D-SVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 454 al~~-----~p~---~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P----~-~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
++.. .+. ...++...+..+...|++++|...+.+++ .... . ....+...+.+....|
T Consensus 557 al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~G--------- 626 (903)
T PRK04841 557 AFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL-EVLSNYQPQQQLQCLAMLAKISLARG--------- 626 (903)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH-HhhhccCchHHHHHHHHHHHHHHHcC---------
Confidence 8764 111 12234455677778899999999999987 4322 1 1222222333444444
Q ss_pred hchHHHHHHHHHHHhhcChhhhHHHHHHHH-----HHHHhh--hHHHHHHHHHHHHhhhhCCCCCCCcc--hHHHHHHHH
Q 005817 521 ADILSIFELLKCILTKVSALESESLWLMAL-----KFFMNQ--KHYFDKLVEIALISVAKDGGGESGFS--LPSAIINLV 591 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l-----~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~y~~~~ 591 (676)
+.+.+...+.++............|.... ...... .+.+...+... ..+..+. .... +....+...
T Consensus 627 -~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~---~~~~~~~-~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 627 -DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQA---PKPEFAN-NHFLQGQWRNIARAQ 701 (903)
T ss_pred -CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCCcc-chhHHHHHHHHHHHH
Confidence 46778888888765321110011111100 111111 12222222211 1111110 0000 011234446
Q ss_pred HHhcCHHHHHHHHHHHHcCCCC---C---HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817 592 IQKDGIQQAREMYKRFLALPRP---G---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (676)
Q Consensus 592 ~~~g~~~~Ar~iy~~al~~~p~---~---~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~ 653 (676)
...|+.++|..++++++..... . ..............| +.+.|+..+++|+.....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G------~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG------RKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHhCc
Confidence 6789999999999999764211 1 123333444445666 789999999999998763
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.95 E-value=0.65 Score=36.69 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc---CCC-h---HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHH
Q 005817 459 CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK---LSD-S---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLK 531 (676)
Q Consensus 459 p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~---~P~-~---~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~ 531 (676)
|....++...+..+...|++++|+..+++++ .. .++ + ...+...+.+....| +.+++.+.|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~g----------~~~~A~~~~~ 70 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKAL-DIEEQLGDDHPDTANTLNNLGECYYRLG----------DYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHHHTTTHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH
Confidence 3445678889999999999999999999998 42 332 2 334444455555544 4788888888
Q ss_pred HHHhh
Q 005817 532 CILTK 536 (676)
Q Consensus 532 ~Al~~ 536 (676)
+|++.
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 215
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.59 E-value=1 Score=28.94 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005817 191 PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (676)
Q Consensus 191 ~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~ 224 (676)
+.+|...+.... ..|+++.|...|+++|+++|+
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence 357888888775 688999999999999999986
No 216
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.55 E-value=45 Score=38.34 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=56.4
Q ss_pred CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhh
Q 005817 362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVE 441 (676)
Q Consensus 362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~ 441 (676)
.++.+|-+++++.-. .|..+.|..+|..|-.. |.+-.+. =.+
T Consensus 910 ~d~~L~~WWgqYlES-------------~GemdaAl~~Y~~A~D~------------fs~VrI~-------------C~q 951 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLES-------------VGEMDAALSFYSSAKDY------------FSMVRIK-------------CIQ 951 (1416)
T ss_pred cchHHHHHHHHHHhc-------------ccchHHHHHHHHHhhhh------------hhheeeE-------------eec
Confidence 346788888887633 57889999999888431 1111110 014
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
|++++|-.+-+. ..+...-...+..+...|++.+|...|-+|-
T Consensus 952 Gk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 952 GKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred cCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667777666544 3445566778889999999999988877764
No 217
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.18 E-value=0.54 Score=29.83 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
..+..+..+.+.|++++|..++++.+ ..+|+|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~-~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI-KRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH-HHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-HHCcCC
Confidence 34566777778899999999999999 889975
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.95 E-value=2.3 Score=38.25 Aligned_cols=57 Identities=7% Similarity=-0.062 Sum_probs=30.0
Q ss_pred HHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817 162 FKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (676)
Q Consensus 162 ~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral 219 (676)
..+++.+...| +..+..++.+++..+|.+..+|...++... ..|+...|..+|++..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHH
Confidence 33333333333 345566666666666666666666666554 4556666665555554
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.45 E-value=0.98 Score=29.02 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
+..|..-+..+...|++++|...+++++ +..|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRAL-ELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHH-HHCcCC
Confidence 3578888999999999999999999999 878763
No 220
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.26 E-value=7.5 Score=36.63 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.+.++.|...|..||..+|... --..|..--... ...+..+.|+.-..+|++.+|.......
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~---------------iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL---------------IKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH---------------HHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 4789999999999999998532 222232221111 1235567888899999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
.-+..+.+...+++|+.=|.+.+ ...|..
T Consensus 173 RRAeayek~ek~eealeDyKki~-E~dPs~ 201 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKIL-ESDPSR 201 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH-HhCcch
Confidence 88889999999999999999998 777754
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.48 E-value=6.8 Score=43.07 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHh
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI 424 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~ 424 (676)
....++.+++.+...+|++.-.....|+++.. .++++.|++.|++++.....-+.......++..+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-------------~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERL-------------KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC 314 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH
Confidence 45689999999999999987766677887754 58899999999999853222111222223333332
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHhcCCH-------HHHHHHHHHH
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR-YVTLYLQLGKL-------DEARKLAAKL 488 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~-~~~l~~~~~~~-------~~A~~l~~~a 488 (676)
. ..+.+.++|...+.+....+.-+..+|.. -+-.+...++. ++|..++.++
T Consensus 315 ~-------------~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 315 H-------------MFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred H-------------HHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 1 12466889999999988875544444333 35556667766 5555555543
No 222
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=32 Score=34.13 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
.+..|.=+|+..-.+.|.++.+-...+...+..+++++|..+++.|+ ...|+.++.....+-+....|.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL-~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL-DKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHhCC
Confidence 47788899999888788899999999999999999999999999999 7788888888888877776665
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.00 E-value=1.3 Score=28.32 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005817 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (676)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~ 224 (676)
.+|...+.... ..|+++.|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 56888888875 688999999999999999884
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.84 E-value=6.3 Score=35.41 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
.....+..+...|++++|..++.+++ ...|.+..+|...+..+...|. ...+.++|++..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l-~~dP~~E~~~~~lm~~~~~~g~----------~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRAL-ALDPYDEEAYRLLMRALAAQGR----------RAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH-HHSTT-HHHHHHHHHHHHHTT-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHCcC----------HHHHHHHHHHHHH
Confidence 44556777778888888888888888 7888888888888888887764 4555555555543
No 225
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=85.15 E-value=1.6 Score=43.60 Aligned_cols=60 Identities=13% Similarity=0.257 Sum_probs=52.2
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~ 233 (676)
.+++.++|+-|+.+.|++|++-+.++.|. |.++++-.|-.+|-+||...|.+.+....-.
T Consensus 132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~-E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 132 LEKAMTLFEHALALAPTNPQILIEMGQFR-EMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHhHHH-HhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 47899999999999999999999999997 5778999999999999999998866544433
No 226
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.97 E-value=42 Score=32.30 Aligned_cols=195 Identities=16% Similarity=0.040 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH-HHHHHHhccccCCCCCh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR-ISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~-i~l~~~~~~~~~~~p~~ 520 (676)
|-..-||--|..++...|.-|+++-..+-.+...|+++.|...++..+ +..|...-....+ |.++- .|.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~-ELDp~y~Ya~lNRgi~~YY-~gR-------- 148 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYY-GGR-------- 148 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh-ccCCcchHHHhccceeeee-cCc--------
Confidence 344556777889999999999999999999999999999999999999 8888765433333 22221 111
Q ss_pred hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHH
Q 005817 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDK-LVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQ 599 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~ 599 (676)
..-+.+-|.+--+.-|.+....+|....+ .......+.. +.+++.. . + ..-|-...+++.. |.+.
T Consensus 149 --~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~-~--d-----~e~WG~~iV~~yL--gkiS- 214 (297)
T COG4785 149 --YKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEK-S--D-----KEQWGWNIVEFYL--GKIS- 214 (297)
T ss_pred --hHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHh-c--c-----HhhhhHHHHHHHH--hhcc-
Confidence 22222222333333344445678874221 1111122221 2233321 1 1 1234323345543 2222
Q ss_pred HHHHHHHHHcCCCCCHHH----HHHHHHH---HhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhh
Q 005817 600 AREMYKRFLALPRPGLVL----YQNCIEL---ENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETK 667 (676)
Q Consensus 600 Ar~iy~~al~~~p~~~~l----~~~~i~l---E~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~ 667 (676)
...+++++......+..+ -..+-.| ...+| +++.|-.+|.-|+...-- .-+=.+|+-||..
T Consensus 215 ~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G------~~~~A~~LfKLaiannVy-nfVE~RyA~~EL~ 282 (297)
T COG4785 215 EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG------DLDEATALFKLAVANNVY-NFVEHRYALLELS 282 (297)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHH
Confidence 234566665544333321 1222222 23445 788999999888875221 1344566677754
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.34 E-value=2.1 Score=27.34 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
.+|...+.++...|++++|...+++++ +..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~-~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL-ELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC
Confidence 578899999999999999999999999 65553
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=82.26 E-value=1.9 Score=33.98 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHc----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 441 EHYISHLLTVYEKAEAM----GCLT---EDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~----~p~~---~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.|.+++|+..|++|+.. ++.. ...+...+..+...|++++|...+++++
T Consensus 18 ~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 18 LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999865 2222 3467778999999999999999999998
No 229
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.01 E-value=9.1 Score=37.15 Aligned_cols=92 Identities=9% Similarity=0.131 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005817 142 RILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220 (676)
Q Consensus 142 ~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~ 220 (676)
-+..-|-||+...|..+..|.+-+--..+.+ .+.+..-..||+++.|+....-.....+.+ ...+++.|...++||..
T Consensus 28 ~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l-~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 28 DAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL-QSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH-hhccccHHHHHHHHHHH
Confidence 3556999999999999999988776555555 467788888999999998877777777765 45689999999999953
Q ss_pred hC---C--CCHHHHHHHHH
Q 005817 221 VC---P--TSEELWVEYLR 234 (676)
Q Consensus 221 ~~---p--~~~~lW~~y~~ 234 (676)
.. | ...++|..+..
T Consensus 107 l~r~~~~~~~~di~~~L~~ 125 (284)
T KOG4642|consen 107 LLREQPFTFGDDIPKALRD 125 (284)
T ss_pred HHhcCCCCCcchHHHHHHH
Confidence 32 2 22567766554
No 230
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.31 E-value=78 Score=32.91 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCC---
Q 005817 541 ESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPG--- 614 (676)
Q Consensus 541 ~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~--- 614 (676)
.....|...++.....+ +.+..++..+.....+.. ...+.+...++.+++..|+..+|....+..+.. ....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34557776665443333 334444544432111111 013566667899999999999999998888761 1100
Q ss_pred ------------------------------HHHHHHHHHHHhhc-cCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005817 615 ------------------------------LVLYQNCIELENNL-ASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (676)
Q Consensus 615 ------------------------------~~l~~~~i~lE~~~-~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~ 663 (676)
...+.....+-... .. .+..+.+.+.+.|..|++..|+....|..|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSK-LSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 01222233222222 00 01237899999999999999988889999998
Q ss_pred HHhhc
Q 005817 664 TETKV 668 (676)
Q Consensus 664 fE~~~ 668 (676)
|..+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 87653
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=80.27 E-value=84 Score=33.23 Aligned_cols=172 Identities=10% Similarity=0.049 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcccc
Q 005817 442 HYISHLLTVYEKAEAM----GCLTEDIAHRYVTLYLQ---LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRN 514 (676)
Q Consensus 442 ~~~~~a~~iye~al~~----~p~~~~lw~~~~~l~~~---~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~ 514 (676)
.+++....+.+..-.. .+.++.+-..||--+.+ .|+.++|+.++..++....+.+++.+......+...-. .
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~-~ 233 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL-E 233 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-H
Confidence 3466777777665444 23467788899999988 89999999999996646666777877776655542200 0
Q ss_pred CCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh----hhHHHHHHHHHHHHhhhhCCCCCCCcchHH--HHH
Q 005817 515 SFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMN----QKHYFDKLVEIALISVAKDGGGESGFSLPS--AII 588 (676)
Q Consensus 515 ~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~y~ 588 (676)
...-+....+++.+.|.+|...-+.. -..|-...+-.... ....++++.-+.-..+......++...++. .++
T Consensus 234 s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~ 312 (374)
T PF13281_consen 234 SNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLL 312 (374)
T ss_pred cCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 00001124678888899998754321 11111111101111 112233332111111111110111233331 234
Q ss_pred HHHHHhcCHHHHHHHHHHHHcCCCCCH
Q 005817 589 NLVIQKDGIQQAREMYKRFLALPRPGL 615 (676)
Q Consensus 589 ~~~~~~g~~~~Ar~iy~~al~~~p~~~ 615 (676)
+...-.|+.++|.+.+++++...|+..
T Consensus 313 Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 313 EASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 445568999999999999998866554
No 232
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.58 E-value=3.3 Score=26.02 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=18.0
Q ss_pred hCCCHHHHHHHHHHHHHhCCCC
Q 005817 204 HNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 204 ~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
..|+.+.|+.+|++.+...|+|
T Consensus 12 ~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHCHHHHHHHHHHHHHHHSTTS
T ss_pred HccCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888875
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=77.50 E-value=22 Score=31.15 Aligned_cols=86 Identities=9% Similarity=-0.101 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---hHHHHHHHHHHHHHhccccCCC
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---SVQLWLLRISVEIRCVTRNSFS 517 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~---~~~lW~~~i~l~~~~~~~~~~~ 517 (676)
.|.++.|.+.|.+++...|..+..|-.-++-+.-+|+.++|+.=+++|+.-..|. -...+.++..++...|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~----- 130 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN----- 130 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc-----
Confidence 3678999999999999999999999999999999999999999999999323343 34567777777776663
Q ss_pred CChhchHHHHHHHHHHHhh
Q 005817 518 PSKADILSIFELLKCILTK 536 (676)
Q Consensus 518 p~~~~~~~~~~~f~~Al~~ 536 (676)
-+.++.=|+.|-+.
T Consensus 131 -----dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 -----DDAARADFEAAAQL 144 (175)
T ss_pred -----hHHHHHhHHHHHHh
Confidence 57777778888653
No 234
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.91 E-value=4.2 Score=24.44 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
..|...+..+...++++.|...+.+++ +..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~-~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL-ELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH-ccCCC
Confidence 467788888999999999999999999 66664
No 235
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=75.31 E-value=5.4 Score=26.10 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
|...+.++.+.|++++|..+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678899999999999999999966
No 236
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.76 E-value=1.5e+02 Score=33.07 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHhcCHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 580 GFSLPSAIINLVIQKDGIQQAREMYKRFLAL----PRPG---LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 580 ~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~----~p~~---~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
.|.+....+....+.++.+.|-.++..|+.- .+.+ ..+|...+.|+...| +.+.+-.+++..++.+|
T Consensus 416 ~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G------~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 416 LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG------NEEEASSLLEELVKFNP 489 (652)
T ss_pred ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC------chHHHHHHHHHHHHhCC
Confidence 3455534445566677777788888888641 1222 237778888998888 78999999999999998
Q ss_pred CCc----hHHHHHHHH
Q 005817 653 QNT----SLWRDYYST 664 (676)
Q Consensus 653 ~~~----~lW~~y~~f 664 (676)
.+. .+-..|+.+
T Consensus 490 ~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL 505 (652)
T ss_pred chHHHHHHHHHHHHhc
Confidence 554 344444443
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=74.56 E-value=94 Score=33.84 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch-----------hHHH------
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-----------MIFD------ 414 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~-----------~lw~------ 414 (676)
.-.++++.+|+...+|+.+|.-+- .-+.+|..+|++|++.-... ..|.
T Consensus 190 aA~eALei~pdCAdAYILLAEEeA---------------~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rd 254 (539)
T PF04184_consen 190 AAKEALEINPDCADAYILLAEEEA---------------STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRD 254 (539)
T ss_pred HHHHHHHhhhhhhHHHhhcccccc---------------cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccc
Confidence 334566677777777777775432 23677888888888753210 0111
Q ss_pred ----HHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817 415 ----LYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 415 ----~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~--~~~lw~~~~~l~~~~~~~~~A~~l~~~a 488 (676)
.|++....+... ..|..+.|.+.|...+..+|. .-.+....++.++..+.+.++..++.+-
T Consensus 255 t~~~~y~KrRLAmCar-------------klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 255 TNVLVYAKRRLAMCAR-------------KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cchhhhhHHHHHHHHH-------------HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 222222222111 247788999999999877665 3457777888999999999999988886
Q ss_pred hhccCCChHHHHHHHHHHHHHh-ccccCCCCCh-------hchHHHHHHHHHHHhhcCh
Q 005817 489 CSGKLSDSVQLWLLRISVEIRC-VTRNSFSPSK-------ADILSIFELLKCILTKVSA 539 (676)
Q Consensus 489 l~~~~P~~~~lW~~~i~l~~~~-~~~~~~~p~~-------~~~~~~~~~f~~Al~~~~~ 539 (676)
-.-..|+|..+-...+-+..+. ++ ..+|+. .....+.+.+.+|++..|+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d--~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGD--KFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhcc--ccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 5224677765444444333221 21 111100 0122355667888876554
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.28 E-value=1.4e+02 Score=32.79 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCC-CChhhHH-HHHHHhccccCCCCCCCcCc
Q 005817 311 VLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL-VDPKYWD-WLARLKMTDSVSKDGTSEDI 388 (676)
Q Consensus 311 ~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p-~~~~~w~-~la~~~~~~~~~~~~~~~~~ 388 (676)
--.-+|.-.+..+|.. +..++.-++..++.+.....+..+.+... ..+-.-. .++.+..-... .+. ..
T Consensus 175 ~G~G~f~L~lSlLPp~------~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~--~~~--~~ 244 (468)
T PF10300_consen 175 FGFGLFNLVLSLLPPK------VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSF--LGI--DG 244 (468)
T ss_pred HHHHHHHHHHHhCCHH------HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH--cCC--cc
Confidence 3456777777888854 22333334555566677777777655221 1222211 11111110000 000 00
Q ss_pred chhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH----HH
Q 005817 389 VPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----DI 464 (676)
Q Consensus 389 ~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~----~l 464 (676)
.....+.|.++.+...+.-|+..+|..+...... .+|+++.|.+.|++|+.....-+ -.
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-----------------~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~ 307 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-----------------LKGNLEEAIESFERAIESQSEWKQLHHLC 307 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----------------HhcCHHHHHHHHHHhccchhhHHhHHHHH
Confidence 2346788999999999999998888665544333 25789999999999986422211 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (676)
+...+-.+.-..++++|...+.+.+ +....|..+
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~-~~s~WSka~ 341 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLL-KESKWSKAF 341 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHH-hccccHHHH
Confidence 4444555567789999999999999 666665433
No 239
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.30 E-value=25 Score=34.25 Aligned_cols=83 Identities=7% Similarity=0.006 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~ 521 (676)
..+..|..-|.+|+..+|+.+..|..=|..+++.++++.+..=..+|+ +..|+++.-.....+-.....
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral-ql~~N~vk~h~flg~~~l~s~---------- 92 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL-QLDPNLVKAHYFLGQWLLQSK---------- 92 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH-hcChHHHHHHHHHHHHHHhhc----------
Confidence 457788889999999999999999999999999999999988899999 889998766655443333222
Q ss_pred chHHHHHHHHHHHh
Q 005817 522 DILSIFELLKCILT 535 (676)
Q Consensus 522 ~~~~~~~~f~~Al~ 535 (676)
..+.+...+++|..
T Consensus 93 ~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYS 106 (284)
T ss_pred cccHHHHHHHHHHH
Confidence 24667777788754
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.19 E-value=38 Score=33.17 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHHHHHc--------CCCcH----------HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAM--------GCLTE----------DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL 502 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~--------~p~~~----------~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (676)
.|.+..|..-|..|+.. .|.++ .++++|.+.++..|++-++.......+ ..+|.++..+..
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL-~~~~~nvKA~fr 269 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL-RHHPGNVKAYFR 269 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH-hcCCchHHHHHH
Confidence 46677777777777653 45554 368889999999999999999999999 899999999999
Q ss_pred HHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 503 RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 503 ~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
++......= +..++..=|.++|..-|
T Consensus 270 RakAhaa~W----------n~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 270 RAKAHAAVW----------NEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHHhhc----------CHHHHHHHHHHHHhcCh
Confidence 887665321 35667777888887554
No 241
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.12 E-value=3e+02 Score=36.05 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817 156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~ 222 (676)
...+.|+++++++++.| .+.|.+.+-.|.... -|++.++.|++.| ..|+...|..++|..+..+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhh
Confidence 34689999999999888 578888887787766 4799999999999 7889999999999999655
No 242
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.95 E-value=1.2e+02 Score=31.41 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHP----KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P----~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~ 221 (676)
.......|+.++..+++.| ...+...+.++....+ ..|.+-+.+|++.+ ..|+-..|...++..+..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 4456789999999999998 4678888888887652 25788999999998 578999999999988883
No 243
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.92 E-value=6 Score=23.66 Aligned_cols=32 Identities=9% Similarity=-0.002 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 005817 192 GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT 224 (676)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~ 224 (676)
..|...+.... ..++.+.|...|++++...|.
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 35566666654 467889999999999888775
No 244
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=72.91 E-value=9 Score=26.14 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817 450 VYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (676)
Q Consensus 450 iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~ 482 (676)
.+.+|+..+|.+...++-|++++...|+...|.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 467788889999999999999999999987664
No 245
>PRK04841 transcriptional regulator MalT; Provisional
Probab=69.21 E-value=2.6e+02 Score=33.63 Aligned_cols=157 Identities=10% Similarity=-0.013 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHhcCC----CC-hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHH
Q 005817 345 SDDMHDKILSDMQRDFL----VD-PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLY 416 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p----~~-~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y 416 (676)
..+.+...+..++.... .. ...+..++..... .++.+.|...+++++...... ..|...
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~-------------~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA-------------RGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 45566666666554322 11 2234445555543 467888888888886532211 112111
Q ss_pred HHHH-HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005817 417 TKFL-MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSG 491 (676)
Q Consensus 417 ~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~ 491 (676)
.... ..... ..|..+.+...+.......+.. ...+...+..+...|++++|..++++++ .
T Consensus 655 ~~~~~~~~~~--------------~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al-~ 719 (903)
T PRK04841 655 ADKVRLIYWQ--------------MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN-E 719 (903)
T ss_pred HHHHHHHHHH--------------HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-H
Confidence 1100 01000 1245666777665544322221 1235567778889999999999999998 4
Q ss_pred cCC------ChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817 492 KLS------DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 492 ~~P------~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
... ........++......| +.+++...+.+|+.....
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G----------~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQG----------RKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHhCc
Confidence 321 12334444555555555 368888999999986543
No 246
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=68.94 E-value=1.6e+02 Score=31.10 Aligned_cols=303 Identities=13% Similarity=0.020 Sum_probs=168.6
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHH-HHHHHhccccCCCCCCC
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWD-WLARLKMTDSVSKDGTS 385 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~-~la~~~~~~~~~~~~~~ 385 (676)
|+...|++.-.++-+.+..+.+-...+++.-...- .+.++.+++-|+.|+. + |++.. -+--+|++.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~-eG~~~~Ar~kfeAMl~-d---PEtRllGLRgLyleA-------- 164 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALL-EGDYEDARKKFEAMLD-D---PETRLLGLRGLYLEA-------- 164 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHh-cCchHHHHHHHHHHhc-C---hHHHHHhHHHHHHHH--------
Confidence 35667888888887777666565666666544432 2467788888887764 2 33321 111122210
Q ss_pred cCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH--
Q 005817 386 EDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-- 463 (676)
Q Consensus 386 ~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~-- 463 (676)
...|..+-|+..-+++-..-|+.. |-.-..++.. .. .|+.+.|+.+.+.........++
T Consensus 165 --qr~GareaAr~yAe~Aa~~Ap~l~-WA~~AtLe~r-~~---------------~gdWd~AlkLvd~~~~~~vie~~~a 225 (531)
T COG3898 165 --QRLGAREAARHYAERAAEKAPQLP-WAARATLEAR-CA---------------AGDWDGALKLVDAQRAAKVIEKDVA 225 (531)
T ss_pred --HhcccHHHHHHHHHHHHhhccCCc-hHHHHHHHHH-Hh---------------cCChHHHHHHHHHHHHHHhhchhhH
Confidence 124566778888788877666543 3222222221 11 24455555555444433111111
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 464 -----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 464 -----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
..+.--.+..-..+...|+.....++ +.-|+.+.-=..-+..+.+.+ ++.+.-++++.+-+..|
T Consensus 226 eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~-KL~pdlvPaav~AAralf~d~----------~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 226 ERSRAVLLTAKAMSLLDADPASARDDALEAN-KLAPDLVPAAVVAARALFRDG----------NLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCccchHHHHHHHHHHhcc----------chhhhhhHHHHHHhcCC
Confidence 11111112223345777888888888 777876544444444444443 46777778888888777
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHH--HHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHH
Q 005817 539 ALESESLWLMALKFFMNQKHYFDKLVEIA--LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLV 616 (676)
Q Consensus 539 ~~~~~~lW~~~l~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~ 616 (676)
+. .||..|.. . +.++....-++++ +.++.|++. .... .-++-.+..|++..||.--+.+....| ...
T Consensus 295 HP---~ia~lY~~-a-r~gdta~dRlkRa~~L~slk~nna----es~~-~va~aAlda~e~~~ARa~Aeaa~r~~p-res 363 (531)
T COG3898 295 HP---DIALLYVR-A-RSGDTALDRLKRAKKLESLKPNNA----ESSL-AVAEAALDAGEFSAARAKAEAAAREAP-RES 363 (531)
T ss_pred Ch---HHHHHHHH-h-cCCCcHHHHHHHHHHHHhcCccch----HHHH-HHHHHHHhccchHHHHHHHHHHhhhCc-hhh
Confidence 64 47876642 1 1122111111221 223445441 1111 234445567899999998888877644 345
Q ss_pred HHHHHHHHHhhc-cCCCCccchHHHHHHHHHHHhhC--C--C-----------CchHHHHHHHHHhhcC
Q 005817 617 LYQNCIELENNL-ASVGDKDSLVNARKLFESALATY--D--Q-----------NTSLWRDYYSTETKVS 669 (676)
Q Consensus 617 l~~~~i~lE~~~-~~~~~~~~~~~aR~lye~al~~~--~--~-----------~~~lW~~y~~fE~~~G 669 (676)
+|.-+.++|... | +..++|.+.-+++... | + ..++|-...-||-+-.
T Consensus 364 ~~lLlAdIeeAetG------Dqg~vR~wlAqav~APrdPaW~adg~vse~wapvspvtgRLdafewkap 426 (531)
T COG3898 364 AYLLLADIEEAETG------DQGKVRQWLAQAVKAPRDPAWTADGVVSEAWAPVSPVTGRLDAFEWKAP 426 (531)
T ss_pred HHHHHHHHHhhccC------chHHHHHHHHHHhcCCCCCcccccCcccccccccCCchhhhhhhhhcCc
Confidence 777788888654 5 8899999999999852 1 0 1256767777776643
No 247
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.36 E-value=68 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 449 TVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 449 ~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
..++.++..+|.+.+..+..+..+...|++++|...+-.++ +..|+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v-~~dr~~ 55 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV-RRDRDY 55 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-CC-TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCccc
Confidence 45677888899999999999999999999999999999999 766653
No 248
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.99 E-value=16 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.9
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 204 HNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 204 ~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
..|+++.|+...++.|+..|++.+
T Consensus 13 kl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 13 KLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HhhhHHHHHHHHHHHHhhCCCcHH
Confidence 578999999999999999999854
No 249
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=65.51 E-value=16 Score=37.65 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=42.6
Q ss_pred cCcHHHHHHHHHHHHhcCCCC---hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817 343 AQSDDMHDKILSDMQRDFLVD---PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (676)
Q Consensus 343 ~~~~~~a~~il~~~~~~~p~~---~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~ 408 (676)
+...+.+..+|+.++..-|+. ...|+++|+++-. .+.++..+.+|++|+..-.
T Consensus 116 Gcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~-------------~~~~e~vi~iyEeAi~agA 171 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPR-------------TGPIEDVIAIYEEAILAGA 171 (353)
T ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-------------cCCHHHHHHHHHHHHHcCC
Confidence 345667888999999999986 4579999999854 4667899999999998643
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=64.57 E-value=96 Score=33.77 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=35.4
Q ss_pred hcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 474 QLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 474 ~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+..+.+.-.++..+|+ ..+|+..+.|...+.-+ . ..+.++.++|++|++.
T Consensus 180 RERnp~aRIkaA~eAL-ei~pdCAdAYILLAEEe--A----------~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 180 RERNPQARIKAAKEAL-EINPDCADAYILLAEEE--A----------STIVEAEELLRQAVKA 229 (539)
T ss_pred hcCCHHHHHHHHHHHH-HhhhhhhHHHhhccccc--c----------cCHHHHHHHHHHHHHH
Confidence 4456677778888999 88898888777654211 1 1367888889999874
No 251
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.76 E-value=1.7e+02 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=29.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcc
Q 005817 588 INLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLA 629 (676)
Q Consensus 588 ~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~ 629 (676)
+-.-..+|++++|..+.+.++...+..+......|-+-..+|
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 444556788888888888888777777777766666655555
No 252
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.65 E-value=31 Score=35.37 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhCCCHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIY--AAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~--~a~~e~~~~~~~~~Ar~~~ 215 (676)
-.+.|...|-+++...|.+.-+...-+--..+.+ +..+..-+.-|+.++-.....+-. .|+++ .|++..|..-+
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~---Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES---LGNNMEAKKDC 188 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH---HhhHHHHHHhH
Confidence 3567889999999999988777665554443433 444455555566554433333322 23333 46899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q 005817 216 QNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 216 ~ral~~~p~~~~lW~~y~~~e 236 (676)
+++|++.|.+-+|-..|.++.
T Consensus 189 E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 189 ETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHhhCcccHHHHHHHHHhc
Confidence 999999999877777776653
No 253
>PRK10941 hypothetical protein; Provisional
Probab=62.42 E-value=44 Score=33.68 Aligned_cols=69 Identities=14% Similarity=0.075 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHH----cc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 158 IELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 158 ~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
.++-.+.++-++. .+ ..+|.++.++++.+.|.+|.-|-.-+-... +.|....|+.=++..+..||+.+.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchh
Confidence 3455555555433 23 478999999999999999999998888774 788999999999999999998765
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=62.22 E-value=1.3e+02 Score=27.67 Aligned_cols=189 Identities=17% Similarity=0.069 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH-HhccccCCCCCC
Q 005817 308 GLRVLQTIYSGAVE--ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR-LKMTDSVSKDGT 384 (676)
Q Consensus 308 ~~~~a~~iy~~Al~--~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~-~~~~~~~~~~~~ 384 (676)
.+..+...+..++. ..+.....+.......... .....+...+.......+.+...+..... .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 142 (291)
T COG0457 74 RLEEALELLEKALELELLPNLAEALLNLGLLLEAL---GKYEEALELLEKALALDPDPDLAEALLALGALYE-------- 142 (291)
T ss_pred cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH---hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH--------
Confidence 34555666666654 3333333333322222221 13456777778877777766444444443 2322
Q ss_pred CcCcchhHHHHHHHHHHHHhhccCc-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC-cH
Q 005817 385 SEDIVPSQMQKAIQVYEEALKNVPS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL-TE 462 (676)
Q Consensus 385 ~~~~~~~~~~~A~~~ye~al~~~~~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~-~~ 462 (676)
.++++.|...|++++...|. ...-..+....... ...+....+...+.+++...+. ..
T Consensus 143 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~~~~~~ 202 (291)
T COG0457 143 -----LGDYEEALELYEKALELDPELNELAEALLALGALL---------------EALGRYEEALELLEKALKLNPDDDA 202 (291)
T ss_pred -----cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH---------------HHhcCHHHHHHHHHHHHhhCcccch
Confidence 46789999999999874442 11111111111110 0135688999999999998887 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
..+......+...+.++.|...+..++ ...|.....+..........+ ..+.+...+.+++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKAL-ELDPDNAEALYNLALLLLELG----------RYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH-hhCcccHHHHhhHHHHHHHcC----------CHHHHHHHHHHHHHhCc
Confidence 888888888888899999999999999 777874444444443333222 35666677777776555
No 255
>PRK10941 hypothetical protein; Provisional
Probab=61.00 E-value=71 Score=32.17 Aligned_cols=64 Identities=13% Similarity=-0.031 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
.+..++|..+.++.+...|.++.-|.+=+-++.+.|.+..|+.=++.-+ ..||+.+..=....+
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl-~~~P~dp~a~~ik~q 257 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV-EQCPEDPISEMIRAQ 257 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HhCCCchhHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 899987655444433
No 256
>PF13041 PPR_2: PPR repeat family
Probab=59.11 E-value=47 Score=23.27 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
.-.|-..+..+.+.|++++|.+++++.....++.+...+...+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34577788888999999999999999986666666666655543
No 257
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.86 E-value=35 Score=35.00 Aligned_cols=89 Identities=10% Similarity=-0.024 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
.+|.++.|+.-|.+++...|.++-++..-+.-+.+.+.+..|..=+..|+ .........+.+++..-...|
T Consensus 109 KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai-aLd~~Y~KAYSRR~~AR~~Lg-------- 179 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI-ALDKLYVKAYSRRMQARESLG-------- 179 (536)
T ss_pred hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHh--------
Confidence 46889999999999999999998888888888888877777766666666 443334555666655444333
Q ss_pred hhchHHHHHHHHHHHhhcCh
Q 005817 520 KADILSIFELLKCILTKVSA 539 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~~~~~ 539 (676)
.+.++.+=++.+|..-|.
T Consensus 180 --~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 --NNMEAKKDCETVLALEPK 197 (536)
T ss_pred --hHHHHHHhHHHHHhhCcc
Confidence 245555566666665443
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=56.77 E-value=76 Score=27.98 Aligned_cols=59 Identities=17% Similarity=0.022 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817 586 AIINLVIQKDGIQQAREMYKRFLALPRPGL----VLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (676)
Q Consensus 586 ~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~----~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~ 650 (676)
.-++-...+|+.++|..-+++++++..+.+ .-|.+-..|...+| +.+.||.-|+.|-+.
T Consensus 82 NRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g------~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 82 NRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG------NDDAARADFEAAAQL 144 (175)
T ss_pred cHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC------chHHHHHhHHHHHHh
Confidence 346667778999999999999998754433 24555556777777 889999999999886
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=56.30 E-value=2.3e+02 Score=28.62 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
...++|..+.+.+-...|..+.++...++++.+.++.+.+..++.+++ ...+....-+...+
T Consensus 101 ~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi-~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 101 ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI-RSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH-HhcccccchHHHHH
Confidence 456788888888877788889999999999988888999999999999 65553333344333
No 260
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.50 E-value=1.1e+02 Score=24.88 Aligned_cols=48 Identities=10% Similarity=-0.083 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817 177 KKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 177 ~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
...+++.+..+|+++...+..+...+ ..|+++.|...+...++.+|+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence 45677788888888888888888776 6778888888888888888753
No 261
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=54.28 E-value=34 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCCH
Q 005817 179 VLAQVIRFHPKVPGVWIYAAAWEFDHNLNV 208 (676)
Q Consensus 179 ~~~ral~~~P~~~~lW~~~a~~e~~~~~~~ 208 (676)
.|.+|+..+|.+...|+.||.|.- .+|+.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~-e~gdp 32 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLD-EHGDP 32 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHH-HcCCH
Confidence 455566666666666666666653 44444
No 262
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.20 E-value=24 Score=34.12 Aligned_cols=55 Identities=11% Similarity=-0.017 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
.++.+.+.++|.+|+..-|....-|.....+..+.|+.+.|.+-|++.+ +..|.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L-~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL-ELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH-cCCccc
Confidence 3567899999999999999999999999999999999999999999999 888865
No 263
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=54.13 E-value=61 Score=38.71 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHhhccCchh-----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSM-----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA 465 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~-----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw 465 (676)
+.+++|...|.+.-...|+-+ ++..-+.+.++.-. .++ ...+..|...|++.+.. |..|-=|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~ 555 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASE--QGD----------PRDFTQALSEFSYLHGG-VGAPLEY 555 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHh--cCC----------hHHHHHHHHHHHHhcCC-CCCchHH
Confidence 567888888888888888632 77777777665321 111 23578899999987766 7777789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
+.-|-.+.++|++++-.+.+.-|+ +.+|+.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 586 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLAL-KRYSQHP 586 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHH-HhcCCCC
Confidence 999999999999999999999999 8888654
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.98 E-value=2.8e+02 Score=28.70 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-CCCc---HHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-GCLT---EDIA 465 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-~p~~---~~lw 465 (676)
.|++.+|....++.|+..|+.-+-. +|...... ..|+....+..+++.+-. ++.- .-+-
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~---kfsh~a~f--------------y~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAV---KFSHDAHF--------------YNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhh---hhhhhHHH--------------hccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 3566778888888898888865322 22222110 124444555566666644 3332 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
-.|+--++..|-+++|.+..++|+ +.+|.+ .|..-+
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ral-qiN~~D--~Wa~Ha 214 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRAL-QINRFD--CWASHA 214 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhc-cCCCcc--hHHHHH
Confidence 457777888999999999999999 888775 354433
No 265
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.79 E-value=18 Score=35.01 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
...+-.+|.+++.+-|....-|...+.+. +..|.++.|-..+...|+..|.+
T Consensus 11 ~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 11 AEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccc
Confidence 35678899999999999999999998887 57889999999999999999974
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.62 E-value=35 Score=22.14 Aligned_cols=28 Identities=7% Similarity=-0.085 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 005817 194 WIYAAAWEFDHNLNVTAARALMQNGLRVC 222 (676)
Q Consensus 194 W~~~a~~e~~~~~~~~~Ar~~~~ral~~~ 222 (676)
|...+.... ..|+++.|..+|+++|...
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence 556677764 7889999999999966443
No 267
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.18 E-value=2.8e+02 Score=27.27 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 443 YISHLLTVYEKAEAMG------CLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 443 ~~~~a~~iye~al~~~------p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.++.|.++|.+|-... ....+.++.-+++.++.|+..+|-..|-.|-
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~ 81 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAA 81 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4566666666654331 1124668888888888887666666665554
No 268
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.87 E-value=1.2e+02 Score=28.64 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
...+...+..++.+...| ++.++..|+..+..+|+.++|..+..++. ..+|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~-~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARAR-RLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCc
Confidence 445666667777776655 68999999999999999999999999999 88993
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.74 E-value=2.6e+02 Score=26.67 Aligned_cols=85 Identities=19% Similarity=0.004 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCC
Q 005817 441 EHYISHLLTVYEKAEAMGCLTE----DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF 516 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~----~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~ 516 (676)
.++++.|...++.++.. |.+. -+-+..+.+....|.+++|+++++... . ......+-..+.++....|
T Consensus 102 ~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~-~~w~~~~~elrGDill~kg----- 173 (207)
T COG2976 102 ANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-E-ESWAAIVAELRGDILLAKG----- 173 (207)
T ss_pred hccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-c-ccHHHHHHHHhhhHHHHcC-----
Confidence 46788899999988866 4443 356778999999999999998877644 2 1112233344455555554
Q ss_pred CCChhchHHHHHHHHHHHhhcC
Q 005817 517 SPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 517 ~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
+-++++.-|++|+.+.+
T Consensus 174 -----~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 174 -----DKQEARAAYEKALESDA 190 (207)
T ss_pred -----chHHHHHHHHHHHHccC
Confidence 46889999999998754
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.13 E-value=8.3e+02 Score=32.43 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh---ccCCChHHHHHHHHHHHHHhccccCCCC
Q 005817 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGK-LDEARKLAAKLCS---GKLSDSVQLWLLRISVEIRCVTRNSFSP 518 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~-~~~A~~l~~~al~---~~~P~~~~lW~~~i~l~~~~~~~~~~~p 518 (676)
+++......+.++..-| ....+..|.++.-+.-. .++...++...+. ..+|.- .+|...+..--.. |
T Consensus 1871 ~~~~in~~i~~~~~~lp-~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq-~lW~~~a~~kS~~-------p 1941 (2382)
T KOG0890|consen 1871 NLKLINSLIEEALEHLP-TYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQ-TLWQSAALSKSNV-------P 1941 (2382)
T ss_pred hHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchH-HHHHHHHHHhccc-------H
Confidence 45555666677776644 45677778888876533 3333334444331 467765 5888765322111 1
Q ss_pred ChhchHHHHHHHHHHHhh
Q 005817 519 SKADILSIFELLKCILTK 536 (676)
Q Consensus 519 ~~~~~~~~~~~f~~Al~~ 536 (676)
...+++.+++.++...
T Consensus 1942 --~R~~R~keIL~k~~~~ 1957 (2382)
T KOG0890|consen 1942 --SRVERCKEILTKSRRQ 1957 (2382)
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 1356666666666553
No 271
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.13 E-value=47 Score=34.37 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 005817 174 GRMKKVLAQVIRFHPK---VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-EELWVEYLRM 235 (676)
Q Consensus 174 ~~~~~~~~ral~~~P~---~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~-~~lW~~y~~~ 235 (676)
+.+..++...+...|. ....|++.|+++ ...|.++.+..+|+.|+.....- .++-...+.+
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~-~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLE-PRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 5788899999999997 367999999999 47889999999999999987642 2444444433
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.53 E-value=3.2e+02 Score=27.11 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----CCCcHHHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GCLTEDIA 465 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~p~~~~lw 465 (676)
+++++|..-+.+|++.-..+.-|..-++..++...- ......+..+..+|++|... .|.+...-
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamL-----------ake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAML-----------AKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 457777777888876544444333333433321100 00013355666666666543 23344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+.-+--.+++.+++.|+++|.+++
T Consensus 114 leKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Confidence 555555556666666666666666
No 273
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.45 E-value=27 Score=37.52 Aligned_cols=94 Identities=7% Similarity=-0.035 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
.+..|..+|-+|+...|++..+|..-+.-..+.+ +..+..=+.+|++..|.....++.-+.... ..+.+..|...|+.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m-~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM-ALGEFKKALLDLEK 97 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH-hHHHHHHHHHHHHH
Confidence 4677889999999999999988877754433433 466777778899999988888777766664 46688999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 005817 218 GLRVCPTSEELWVEYL 233 (676)
Q Consensus 218 al~~~p~~~~lW~~y~ 233 (676)
+....|+.+.+=..+-
T Consensus 98 ~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 98 VKKLAPNDPDATRKID 113 (476)
T ss_pred hhhcCcCcHHHHHHHH
Confidence 9999999866544443
No 274
>PF12854 PPR_1: PPR repeat
Probab=42.86 E-value=61 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817 460 LTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (676)
Q Consensus 460 ~~~~lw~~~~~l~~~~~~~~~A~~l~~~ 487 (676)
.+.-.|-..+.-+-+.|+.++|.+++++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3456788889999999999999999875
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=41.71 E-value=1e+02 Score=31.12 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005817 174 GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220 (676)
Q Consensus 174 ~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~ 220 (676)
+.+...+++.+..+|.+..+|...+.... .+|+...|+..|.+.=.
T Consensus 170 ~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 170 DAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHH
Confidence 34556666666666666666666666654 55666666666655443
No 276
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=41.63 E-value=2.1e+02 Score=34.41 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=75.6
Q ss_pred hhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHH-----
Q 005817 77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV----- 151 (676)
Q Consensus 77 ~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral----- 151 (676)
+|..+|...-....-+..|++||+|=.... . . + + ....-.+.+.+|++
T Consensus 19 q~li~el~~~~~~DPl~~w~ryi~wv~~~~------~---~--------~----~------~~~~~l~~~lerc~~~~~~ 71 (974)
T KOG1166|consen 19 QRLIYELESYAGNDPLDKWLRYIEWVLEVY------P---E--------G----K------ENQSLLRNLLERCLEELED 71 (974)
T ss_pred HHHHHHHHhhcCCCchhhhHhHhhhhhhcc------c---c--------C----C------chhhhHHHHHHHHHHhccc
Confidence 455555554466667889999999854321 0 0 0 0 01223344555544
Q ss_pred -HhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HH
Q 005817 152 -MRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-EE 227 (676)
Q Consensus 152 -~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~-~~ 227 (676)
++.+.+..+-..|+-+....-...+..+|.-+-.. -+....++..|+.+. +..+.+..|..+|+.|++..-.- ..
T Consensus 72 lk~Y~nD~Rfl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~l-E~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 72 LKRYRNDPRFLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHL-ERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred hhhccccHHHHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 34455555223322211111134566677666552 344556677777665 46678999999999999766432 35
Q ss_pred HHHHHHHHHHHH
Q 005817 228 LWVEYLRMELTY 239 (676)
Q Consensus 228 lW~~y~~~e~~~ 239 (676)
+-..|..|....
T Consensus 151 L~~~~~~F~~r~ 162 (974)
T KOG1166|consen 151 LLRQYSNFQQRL 162 (974)
T ss_pred HHHHHHHHHHHH
Confidence 556666665554
No 277
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.61 E-value=2.3e+02 Score=27.43 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHcC--CCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 441 EHYISHLLTVYEKAEAMG--CLT----EDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~--p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
...+.+|...|++|.... |.. ..+-..-+++..+.|++++|...+.+++
T Consensus 138 ~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 138 KRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456889999999999873 222 3455566888899999999999999998
No 278
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=1.2e+02 Score=29.93 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
+-.+.......|..+|++.+....-|+-... .=|...|+.=|+++|+.+|.-
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa-~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAA-VWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcChhh
Confidence 3466777788899999999999988887653 348999999999999999964
No 279
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=1.9e+02 Score=29.82 Aligned_cols=85 Identities=18% Similarity=0.089 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHHhhcc-Cchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNV-PSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~-~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
.+++..|+..|.+||+.. +... .-..|.+-.-..+ .-|++..++.-..+|+..+|.....++.
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~---------------~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL---------------YLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH---------------HHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 367899999999999863 3332 2223333222111 1367888888899999999999988888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 005817 468 YVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al 489 (676)
-+..+.....+..|...++.++
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 8888888888777777777766
No 280
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.69 E-value=43 Score=36.04 Aligned_cols=87 Identities=10% Similarity=-0.027 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~ 521 (676)
+.++.|...|.+|+..+|.+..+|-.=+...++.+++..|+.=+.+|+ +..|.....+.+++......+.
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai-e~dP~~~K~Y~rrg~a~m~l~~--------- 87 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI-ELDPTYIKAYVRRGTAVMALGE--------- 87 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh-hcCchhhheeeeccHHHHhHHH---------
Confidence 568889999999999999888877777777778888888888888888 7788877777777655554442
Q ss_pred chHHHHHHHHHHHhhcCh
Q 005817 522 DILSIFELLKCILTKVSA 539 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~~~~ 539 (676)
..++...|+......|.
T Consensus 88 -~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 88 -FKKALLDLEKVKKLAPN 104 (476)
T ss_pred -HHHHHHHHHHhhhcCcC
Confidence 34455555555554444
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.16 E-value=3.3e+02 Score=24.97 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS 409 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~ 409 (676)
..+.++.+++-+....|..+++-..-+.+++. .+++..|+.++++....-|.
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-------------r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIV-------------RGDWDDALRLLRELEERAPG 76 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------------hCCHHHHHHHHHHHhccCCC
Confidence 46788899999999999999988888888876 57899999999997766554
No 282
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.97 E-value=4.5e+02 Score=26.39 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcC-CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-H-HHHHHHHHHHH
Q 005817 347 DMHDKILSDMQRDF-LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-I-FDLYTKFLMDM 423 (676)
Q Consensus 347 ~~a~~il~~~~~~~-p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-l-w~~y~~~~~~~ 423 (676)
...-..+.++++.+ |.++.+--.+++..+. .|+.+.|...|++.-+....-. + ...-+.--...
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-------------~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-------------IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-------------cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34555677777777 5668877788877765 4667777777775543321100 0 00000000000
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
....++++..+...|.+++..+|.++-.--.-|-.++=.|+..+|.++.+.++ .+.|.
T Consensus 261 -------------i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~-~~~P~ 318 (366)
T KOG2796|consen 261 -------------LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV-QQDPR 318 (366)
T ss_pred -------------heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh-ccCCc
Confidence 00123567778888999999988877655555656666788999999999999 88886
No 283
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.85 E-value=58 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
++.+..+...|+.+.|+.+++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 467888889999999999999998
No 284
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=36.84 E-value=77 Score=20.62 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.....+..+...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45667888889999999999999988
No 285
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=35.56 E-value=51 Score=19.59 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAA 486 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~ 486 (676)
..+..+..+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34567788889999999998875
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.56 E-value=2.8e+02 Score=23.68 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh----cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI----APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l 464 (676)
.|+.-+|.++.++.+...+... .|. +...+..+ ..+.+++. .....+-.+.+-|.++....|.....
T Consensus 9 rGnhiKAL~iied~i~~h~~~~~~~~--lh~~QG~if~~lA~~ten~d------~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 9 RGNHIKALEIIEDLISRHGEDESSWL--LHRLQGTIFYKLAKKTENPD------VKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred ccCHHHHHHHHHHHHHHccCCCchHH--HHHHHhHHHHHHHHhccCch------HHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4778899999999998776544 552 22222211 11122211 12234567788899999888888777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P 494 (676)
.+..++-+-....|+++..-.+++++...|
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 777776665566688888888888844444
No 287
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.55 E-value=1.7e+02 Score=22.99 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 005817 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506 (676)
Q Consensus 444 ~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l 506 (676)
+++|..+..+|+.. ...|++++|+.+|..|+ +.|..++..
T Consensus 3 l~~Ai~lv~~Av~~---------------D~~g~y~eA~~lY~~al--------e~~~~~~k~ 42 (75)
T cd02684 3 LEKAIALVVQAVKK---------------DQRGDAAAALSLYCSAL--------QYFVPALHY 42 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHH--------HHHHHHHhh
Confidence 45677777777554 36789999999999999 456665543
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=34.36 E-value=1e+02 Score=31.11 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+..+.+.+.+++.+..+|.+..+|...+..+.+.|+...|+..|+++-
T Consensus 167 ~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 167 GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 567888899999999999999999999999999999999999988865
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.05 E-value=17 Score=37.24 Aligned_cols=81 Identities=10% Similarity=-0.057 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH--HHHHHHHHHHHHhccccCCCCC
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV--QLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~--~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
|.+.+|++.|.+|+..+|....++..-+...++.+....|..=+..|+ ..+|++. .-|.-++.-. .+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~-ein~Dsa~~ykfrg~A~rl--lg-------- 196 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI-EINPDSAKGYKFRGYAERL--LG-------- 196 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh-ccCcccccccchhhHHHHH--hh--------
Confidence 668899999999999999999998888888889999999998899999 8888864 3444444322 22
Q ss_pred hhchHHHHHHHHHHHh
Q 005817 520 KADILSIFELLKCILT 535 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~ 535 (676)
+.+++...|..|++
T Consensus 197 --~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 197 --NWEEAAHDLALACK 210 (377)
T ss_pred --chHHHHHHHHHHHh
Confidence 24555555666655
No 290
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.89 E-value=42 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhhhHhHHH---HHHcCCCCHHHHH
Q 005817 42 MADVVQYRLERMVDELDD---LERRGLFTRHEIS 72 (676)
Q Consensus 42 ma~~v~~~~e~~~~e~~~---~~~~~~~~~~ei~ 72 (676)
|+.+=+.++..||-|+.. +...|+|..++..
T Consensus 1 m~~~n~Enl~fmi~eI~~KLnmvN~gvl~~e~~d 34 (71)
T COG4840 1 MAMPNEENLDFMIEEIREKLNMVNVGVLDPEKYD 34 (71)
T ss_pred CCCcchhhHHHHHHHHHHHHhhhhhhccCHHhcc
Confidence 455667888999999986 7889999875543
No 291
>PF13041 PPR_2: PPR repeat family
Probab=33.18 E-value=1.7e+02 Score=20.37 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 005817 585 SAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCI 622 (676)
Q Consensus 585 ~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~~~l~~~~i 622 (676)
...+....+.|++++|.++|++..+. .+++...|...|
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35677788899999999999999764 345555444433
No 292
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=33.09 E-value=6.2e+02 Score=26.87 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=73.7
Q ss_pred cCcHHHHHHHHHH-HHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q 005817 343 AQSDDMHDKILSD-MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLM 421 (676)
Q Consensus 343 ~~~~~~a~~il~~-~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~ 421 (676)
.+..+.|..++.. +....+.+++++..+++.+-....... ..-...+++|+..|.+|-...|+..-=..++.+..
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~----~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~ 270 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN----FTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLM 270 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC----ccchHHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 4567889999988 666677789999999987732110000 00134589999999999987764321112222222
Q ss_pred HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH-cCCC--cHHHHHH--HHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA-MGCL--TEDIAHR--YVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~-~~p~--~~~lw~~--~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
-. +.+. .....+.+....+...+. .+.. ..+.|.. +++...-.|++++|.+.++++. +..|.
T Consensus 271 ~~----g~~~-------~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~-~l~~~ 337 (374)
T PF13281_consen 271 LA----GHDF-------ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF-KLKPP 337 (374)
T ss_pred Hc----CCcc-------cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh-hcCCc
Confidence 10 1000 001112222222222221 2111 2334433 3333446799999999999999 65554
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.89 E-value=20 Score=36.79 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhCCCHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG--VWIYAAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~--lW~~~a~~e~~~~~~~~~Ar~~~ 215 (676)
....+...|-+|+...|++..+...-.....+.+ ...+.+=++.|+.++|++.. -|--+|.. ..|+...|++.|
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r---llg~~e~aa~dl 205 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER---LLGNWEEAAHDL 205 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH---HhhchHHHHHHH
Confidence 4677889999999999999999888887777665 56788999999999998654 55555554 457999999999
Q ss_pred HHHHHhCCCC-HHHHHH
Q 005817 216 QNGLRVCPTS-EELWVE 231 (676)
Q Consensus 216 ~ral~~~p~~-~~lW~~ 231 (676)
..+++..-+. ...|+.
T Consensus 206 ~~a~kld~dE~~~a~lK 222 (377)
T KOG1308|consen 206 ALACKLDYDEANSATLK 222 (377)
T ss_pred HHHHhccccHHHHHHHH
Confidence 9999887642 245544
No 294
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=2.8e+02 Score=29.58 Aligned_cols=93 Identities=8% Similarity=0.077 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---C-CHHHHHHH
Q 005817 142 RILEIYRLAVMRFKGDIELWFKYMEFCRQRKN---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN---L-NVTAARAL 214 (676)
Q Consensus 142 ~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~---~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~---~-~~~~Ar~~ 214 (676)
.-....+.|++.+|.++..|..-...+.+.+. ..=.++.+++|+.+|++-..|-. =+|..+.. + .-..=..+
T Consensus 93 ~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~Y-RRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 93 EELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHY-RRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHH-HHHHHHHHhcccccchhHHHH
Confidence 33567789999999999999988888877652 34578999999999999999953 34433221 1 12334567
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 005817 215 MQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 215 ~~ral~~~p~~~~lW~~y~~~ 235 (676)
-.+++..++.+-..|..---+
T Consensus 172 tt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHHHHhccchhhhHHHHHHHH
Confidence 788888888888888765544
No 295
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.94 E-value=58 Score=25.63 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 444 ~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+++|+.+..+|+.. -..|++++|+.+|..|+
T Consensus 3 l~kai~Lv~~A~~e---------------D~~gny~eA~~lY~~al 33 (75)
T cd02680 3 LERAHFLVTQAFDE---------------DEKGNAEEAIELYTEAV 33 (75)
T ss_pred HHHHHHHHHHHHHh---------------hHhhhHHHHHHHHHHHH
Confidence 46777778887655 25689999999999999
No 296
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=30.15 E-value=3.5e+02 Score=25.91 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhc--cCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc----CCCcHHHHHH
Q 005817 394 QKAIQVYEEALKN--VPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM----GCLTEDIAHR 467 (676)
Q Consensus 394 ~~A~~~ye~al~~--~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~----~p~~~~lw~~ 467 (676)
+.|+..|-++-.. +.+..|-...+.+..+ .+.++++.+|-++++. +..++++...
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k-------------------rD~~Kt~~ll~~~L~l~~~~~~~n~eil~s 183 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTK-------------------RDPEKTIQLLLRALELSNPDDNFNPEILKS 183 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc-------------------cCHHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q ss_pred HHHHHHhcCCHHHH
Q 005817 468 YVTLYLQLGKLDEA 481 (676)
Q Consensus 468 ~~~l~~~~~~~~~A 481 (676)
.+.++.+.|+++.|
T Consensus 184 Las~~~~~~~~e~A 197 (203)
T PF11207_consen 184 LASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHhcchhhh
No 297
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.03 E-value=1.7e+02 Score=19.20 Aligned_cols=31 Identities=10% Similarity=-0.206 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH--HHHHhCC
Q 005817 192 GVWIYAAAWEFDHNLNVTAARALMQ--NGLRVCP 223 (676)
Q Consensus 192 ~lW~~~a~~e~~~~~~~~~Ar~~~~--ral~~~p 223 (676)
+-|..+|.... ..|+.+.|+.+|+ -+....|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcc
Confidence 45666666554 6789999999965 6655554
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.87 E-value=6.1e+02 Score=25.47 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~----lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
...++.|..-|++.++..+...+ ..-..+.+.-+.+++++-..-|.+.+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34677888888888887655432 23334555556666666655555555
No 299
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=27.12 E-value=3.4e+02 Score=28.12 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=58.4
Q ss_pred HhhhHHHHHHHHHHHhcCCCchhHHHHHHH--HHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCC
Q 005817 306 EQGLRVLQTIYSGAVEALPSSFNLRQRFFE--IVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDG 383 (676)
Q Consensus 306 ~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~--~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~ 383 (676)
.+.+..|+..|.++|+.-..+.++-..++. ....+.+ +++..+..-...++...|.+...++.-|+-.++
T Consensus 94 ~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e------- 165 (390)
T KOG0551|consen 94 EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE------- 165 (390)
T ss_pred hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-------
Confidence 357889999999999875555555443322 2222322 245566666677788899998887777766554
Q ss_pred CCcCcchhHHHHHHHHHHHHhhcc
Q 005817 384 TSEDIVPSQMQKAIQVYEEALKNV 407 (676)
Q Consensus 384 ~~~~~~~~~~~~A~~~ye~al~~~ 407 (676)
.+++..|....+++++..
T Consensus 166 ------Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 166 ------LERFAEAVNWCEEGLQID 183 (390)
T ss_pred ------HHHHHHHHHHHhhhhhhh
Confidence 467777888888776543
No 300
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=26.47 E-value=3.6e+02 Score=24.02 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCS 490 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~ 490 (676)
++..++.-.++......+-.+|++.+..+.-+.+.|+..+|-.++.+|+.
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34556667777776656667899999999999999999999999999993
No 301
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=4e+02 Score=31.01 Aligned_cols=90 Identities=19% Similarity=0.076 Sum_probs=49.1
Q ss_pred ccccCCCcccccccccccccccccchHHHHHHHHHhhh-HhHHHHHH-cCCCCHHHHHHHHHhhHHhHHHhhCCCCChHH
Q 005817 17 RCHSFPSLTSYQFTESTHFLAKSLAMADVVQYRLERMV-DELDDLER-RGLFTRHEISEIVKQRRKFEYRLKRPSPLKQD 94 (676)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~ma~~v~~~~e~~~-~e~~~~~~-~~~~~~~ei~~i~~~R~~fE~~l~~~~~~~~~ 94 (676)
|||+--+.---+..+-+-|+.-+.+-++.=|...|+.. -.+..+.. ..-|- ..-+-| -||-.|.--+.+...
T Consensus 692 ~~~~~~amd~L~~l~i~eFe~~a~k~s~~~~~~y~~ycqiq~~~~~~S~l~f~-----~~~k~r-F~e~~v~~fsrn~~~ 765 (913)
T KOG1972|consen 692 RGHQELAMDLLQALVIQEFESFAPKLSLTEQSLYRSYCQIQIKHFWASNLAFY-----NLPKVR-FFEEGVTLFSRNAFG 765 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccCchhHHHHHHHHHHHHHHHHhhhhhcc-----ccccee-eeccchhhccccchh
Confidence 56666665555666666666666666666666666655 11111110 01110 011223 555556666677889
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005817 95 YLAYIEYESQLDALRRLR 112 (676)
Q Consensus 95 ~~~Yi~~E~~~~~l~~~R 112 (676)
|..|+.+|..+..-.+.|
T Consensus 766 ~e~wa~l~s~l~qk~r~r 783 (913)
T KOG1972|consen 766 WELWAELESELRQKIRKR 783 (913)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999987665433333
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=26.40 E-value=5.3e+02 Score=23.99 Aligned_cols=59 Identities=14% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817 586 AIINLVIQKDGIQQAREMYKRFLALPRP---GLVLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (676)
Q Consensus 586 ~y~~~~~~~g~~~~Ar~iy~~al~~~p~---~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~ 650 (676)
..+++..+.|+++.|.+.|.++..-+.. ...++...|.+-...+ +...+....++|-..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~------d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG------DWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHH
Confidence 3466777788888888888887654322 2336666666655555 666666666666554
No 303
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=25.99 E-value=1.4e+02 Score=18.82 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=19.8
Q ss_pred hhhHhHHHHHHcCCCCHHHHHHHHH
Q 005817 52 RMVDELDDLERRGLFTRHEISEIVK 76 (676)
Q Consensus 52 ~~~~e~~~~~~~~~~~~~ei~~i~~ 76 (676)
+-+..|..|...|+.|.+|-....+
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3467788999999999999876543
No 304
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.30 E-value=1.7e+02 Score=29.72 Aligned_cols=46 Identities=20% Similarity=-0.031 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 005817 195 IYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLN 241 (676)
Q Consensus 195 ~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~ 241 (676)
-..+++.. ..|++..|.++-+|++..+|-+++.|..+.+.....++
T Consensus 283 gkva~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 283 GKVARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 34566675 58899999999999999999999999999887765544
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.11 E-value=6.1e+02 Score=24.23 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC-cHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL-TEDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~-~~~lw~~~ 468 (676)
.++++.|...++.++..... .....-+.+-..... ..++..+.|..+++.--. +. .+.+-..=
T Consensus 102 ~~~~d~A~aqL~~~l~~t~D-e~lk~l~~lRLArvq-------------~q~~k~D~AL~~L~t~~~--~~w~~~~~elr 165 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKD-ENLKALAALRLARVQ-------------LQQKKADAALKTLDTIKE--ESWAAIVAELR 165 (207)
T ss_pred hccHHHHHHHHHHHHccchh-HHHHHHHHHHHHHHH-------------HHhhhHHHHHHHHhcccc--ccHHHHHHHHh
Confidence 57899999999999865433 222222333222110 013455666665543211 11 12233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
.+.+...|+.++|+.-|++|+ ...+.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl-~~~~s 191 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKAL-ESDAS 191 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHH-HccCC
Confidence 788899999999999999999 55443
No 306
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.76 E-value=2.2e+02 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817 176 MKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (676)
Q Consensus 176 ~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p 223 (676)
.....++.+...|+ +.+...++.... .+|+.++|+..++++....|
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALA-LLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 45667777888884 777887777764 78899999999999998888
No 307
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=24.29 E-value=1.3e+03 Score=28.10 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817 443 YISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (676)
Q Consensus 443 ~~~~a~~iye~al~~--~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (676)
....++.+|...... +.....+|..|+.++.+.+.+.+|..++..++....-....+-..+..+..+.
T Consensus 93 ~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~ 162 (974)
T KOG1166|consen 93 ELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRL 162 (974)
T ss_pred HHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 356777888877766 34456789999999999999999999999999444334445555555554443
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.18 E-value=7.4e+02 Score=24.89 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhCCCCCC---CcchHHHH---HHHHHHhcCHHHHHHHHHHHHcCCCCC-HHHHHHHH-----HHHh
Q 005817 559 YFDKLVEIALISVAKDGGGES---GFSLPSAI---INLVIQKDGIQQAREMYKRFLALPRPG-LVLYQNCI-----ELEN 626 (676)
Q Consensus 559 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~~~p~~-~~l~~~~i-----~lE~ 626 (676)
.+++++.+..++|..+.|... ...+...| ++....+++-.+-..+|++++.....- .++.+..| .+..
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 456777776666765554321 12333345 455666778888899999998642111 11222222 2222
Q ss_pred hccCCCCccchHHHHHHHHHHHhhCC
Q 005817 627 NLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 627 ~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
..| ..+.|-.-|-.|...+.
T Consensus 243 reg------~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 243 REG------EFEKAHTDFFEAFKNYD 262 (440)
T ss_pred ccc------hHHHHHhHHHHHHhccc
Confidence 323 56666666666666554
No 309
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.04 E-value=2.2e+02 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 444 ~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+++|..+..+|+.. ...|++++|..+|..|+
T Consensus 3 ~~~A~~l~~~Av~~---------------D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 3 LQKAIELVKKAIEE---------------DNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHH
Confidence 45666666666543 46789999999999999
No 310
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.98 E-value=1.8e+02 Score=17.65 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCS 490 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~ 490 (676)
|...+.-+.+.|++++|..++.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566777889999999999988763
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.95 E-value=8.7e+02 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=30.2
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 456 AMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 456 ~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
..+|-..+..+..+.+...+|+.+.|..++++|+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4568888899999999999999999999999998
No 312
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.55 E-value=1.4e+03 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.+++|.+.-++ +..|.+|-..+.--++.|.+.+|..-|-+|-
T Consensus 1090 ~ldRA~efAe~-----~n~p~vWsqlakAQL~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1090 SLDRAYEFAER-----CNEPAVWSQLAKAQLQGGLVKDAIESYIKAD 1131 (1666)
T ss_pred hHHHHHHHHHh-----hCChHHHHHHHHHHHhcCchHHHHHHHHhcC
Confidence 34555444443 4567888888888888888888877766654
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=23.45 E-value=6e+02 Score=23.60 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC---hHHHHHHHHHHHHHhc
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD---SVQLWLLRISVEIRCV 511 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~---~~~lW~~~i~l~~~~~ 511 (676)
..+...++++.+.|+.+.|++.|.++. ..+.. -.+++...|.+.+-.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhC
Confidence 467789999999999999999999988 55544 3567777776666554
No 314
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.36 E-value=4.8e+02 Score=24.83 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHH
Q 005817 522 DILSIFELLKCILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQA 600 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~A 600 (676)
.++++.+-+..|++...-..-..+|.. ++.+. ..++..+..+++++.. .++..|+-.-.+.++.++|
T Consensus 41 rvdrivdq~~~a~q~~Dl~aLr~~W~~----l~~r~Fs~Le~~y~~~~~kle~--------Sl~r~yLV~~~q~nr~~K~ 108 (241)
T KOG1333|consen 41 RVDRIVDQLQQAMQVYDLAALRDYWSY----LERRLFSRLEDIYRPTIHKLET--------SLFRFYLVYTIQTNRNDKA 108 (241)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhHHHHHHHHH--------HHHHHHHhhhhhcCChHHH
Confidence 578999999999986543333557763 22221 3345555555544421 3444677777788999999
Q ss_pred HHHHHHHH
Q 005817 601 REMYKRFL 608 (676)
Q Consensus 601 r~iy~~al 608 (676)
-+.|.+.-
T Consensus 109 ~EFF~K~a 116 (241)
T KOG1333|consen 109 QEFFAKQA 116 (241)
T ss_pred HHHHHHHH
Confidence 99999873
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.15 E-value=7.9e+02 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=14.2
Q ss_pred cCCChHHHHHHHHHHHHHhcc
Q 005817 492 KLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 492 ~~P~~~~lW~~~i~l~~~~~~ 512 (676)
.+|.-+++..+-..++..+|.
T Consensus 86 klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 86 KLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HhHHHHHHHHHHHHHHHHhCC
Confidence 456666777777777777765
No 316
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.10 E-value=2.4e+02 Score=22.23 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 445 ~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
..|..+..+|+.. .+.|++++|+.+|..|+ +.|...+..+
T Consensus 4 ~~a~~l~~~Ave~---------------D~~g~y~eAl~~Y~~ai--------e~l~~~lk~e 43 (77)
T cd02683 4 LAAKEVLKRAVEL---------------DQEGRFQEALVCYQEGI--------DLLMQVLKGT 43 (77)
T ss_pred HHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHH--------HHHHHHHhhC
Confidence 4556666666544 46799999999999999 4566655443
No 317
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.99 E-value=4.4e+02 Score=29.53 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDI-ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~-~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
....|...+.+|+..-|..- ---.+.+++..+.+ ...+.+.+.++|.++...|-..+..++..+ ...|++.|.+.|.
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l-~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL-ALKNISGALEAFR 700 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHH-HHhhhHHHHHHHH
Confidence 34556778888887777432 12356777777777 357889999999999777777777777766 4569999999999
Q ss_pred HHHHhCCCCHHHHHHH
Q 005817 217 NGLRVCPTSEELWVEY 232 (676)
Q Consensus 217 ral~~~p~~~~lW~~y 232 (676)
.|+...|.++.+=..+
T Consensus 701 ~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 701 QALKLTTKCPECENSL 716 (886)
T ss_pred HHHhcCCCChhhHHHH
Confidence 9999999886544443
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=21.76 E-value=2.7e+02 Score=30.68 Aligned_cols=85 Identities=16% Similarity=0.015 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-c---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN-G---RMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARAL 214 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~-~---~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~ 214 (676)
....+...|.++++..|....+...++..+++.+. . -|.+=...|+.++|..-+.|...++... ..+....|...
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~-el~r~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN-ELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH-HHhhHHHhhhh
Confidence 35567889999999999999999999999888762 2 3445555677788888888888888775 45567777776
Q ss_pred HHHHHHhCCC
Q 005817 215 MQNGLRVCPT 224 (676)
Q Consensus 215 ~~ral~~~p~ 224 (676)
-..+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 6666666664
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=21.68 E-value=2.1e+02 Score=25.54 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=37.3
Q ss_pred hHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 175 RMKKVLAQVIR-FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 175 ~~~~~~~ral~-~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
+-..+++..+. -+|..-.-.+.|+.+---..++++.++++.+..|+..|++.+
T Consensus 53 ~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 53 EGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 44678888886 777654444444332211467999999999999999999755
No 320
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=21.66 E-value=1.4e+02 Score=17.81 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
|...++.+.+.|++++|..++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 6667788889999999999998876
No 321
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=21.49 E-value=1.9e+02 Score=25.98 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=19.3
Q ss_pred HHHHHHhhhHhHH---HHHHcCC-CCHHHHHHHHHhhHHh
Q 005817 46 VQYRLERMVDELD---DLERRGL-FTRHEISEIVKQRRKF 81 (676)
Q Consensus 46 v~~~~e~~~~e~~---~~~~~~~-~~~~ei~~i~~~R~~f 81 (676)
-+..|++|+.+-- .-++.|+ .|++||.+.+++-..|
T Consensus 76 ~~~~l~~lI~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f 115 (154)
T PF13624_consen 76 KQQVLDQLIDQKLLLQEAKKLGISVSDAEVDDAIKQIPAF 115 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3445556655433 2367787 5899998877774333
No 322
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=21.29 E-value=5.5e+02 Score=22.33 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHH
Q 005817 224 TSEELWVEYLRMEL 237 (676)
Q Consensus 224 ~~~~lW~~y~~~e~ 237 (676)
.++++|...+.+-.
T Consensus 123 ~~~~lw~~~~~~~l 136 (140)
T smart00299 123 NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHHH
Confidence 35788888886543
No 323
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=21.26 E-value=3.2e+02 Score=22.52 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred hHHHHHHcCCCCHHHHHHHHH-------hhHHhHHHhhCCCCChHHHHHHHH
Q 005817 56 ELDDLERRGLFTRHEISEIVK-------QRRKFEYRLKRPSPLKQDYLAYIE 100 (676)
Q Consensus 56 e~~~~~~~~~~~~~ei~~i~~-------~R~~fE~~l~~~~~~~~~~~~Yi~ 100 (676)
=+..|...|++|.+|...|.. +|.-+.....+.+.-...|+.+++
T Consensus 28 ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L~ 79 (94)
T cd08329 28 ILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLVKGNAAAEVFRNCLK 79 (94)
T ss_pred HHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345689999999999888743 444444444444444566777664
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=20.94 E-value=3e+02 Score=28.00 Aligned_cols=48 Identities=6% Similarity=-0.157 Sum_probs=35.4
Q ss_pred HHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 168 CRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 168 ~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
|...| +..|..+.+|+++++|-+.+.|..++.... ..|+--.|.+-++
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khye 337 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYE 337 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHH
Confidence 34445 578999999999999999999999888775 5556444444333
No 325
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=20.25 E-value=82 Score=24.39 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhhHhHHH---HHHcCCCCHHHHHH--HHHhhHHhHHHhhCCCCChHH
Q 005817 42 MADVVQYRLERMVDELDD---LERRGLFTRHEISE--IVKQRRKFEYRLKRPSPLKQD 94 (676)
Q Consensus 42 ma~~v~~~~e~~~~e~~~---~~~~~~~~~~ei~~--i~~~R~~fE~~l~~~~~~~~~ 94 (676)
|+++-+..+|.||.++.+ +...+++..+.... .-.=+-.||.-..++.-+++.
T Consensus 1 ls~~s~ENv~~MIe~Ik~KL~mvN~~~i~~~~f~~~~yedl~diy~~V~~K~~fS~sE 58 (71)
T PF06569_consen 1 LSEPSQENVEYMIEEIKQKLNMVNAGAIKPEDFSEEKYEDLKDIYEMVMSKDSFSPSE 58 (71)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhHHhCCHHhCChhhHHHHHHHHHHHHhccCCCHHH
Confidence 455667888899998886 56777776533221 122233355555555555544
No 326
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=20.10 E-value=6.5e+02 Score=22.66 Aligned_cols=188 Identities=21% Similarity=0.084 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH-HHHHhccccCCCC
Q 005817 442 HYISHLLTVYEKAEA--MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS-VEIRCVTRNSFSP 518 (676)
Q Consensus 442 ~~~~~a~~iye~al~--~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~-l~~~~~~~~~~~p 518 (676)
+.+..+...+..+.. ..+.....+...+......+++..+...+..++ ...+.+...+..... .....+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------- 144 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL-ALDPDPDLAEALLALGALYELG------- 144 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHH-cCCCCcchHHHHHHHHHHHHcC-------
Confidence 445666666777665 456777888888888888888999999999988 655554333333222 233333
Q ss_pred ChhchHHHHHHHHHHHhhcCh--hhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHh
Q 005817 519 SKADILSIFELLKCILTKVSA--LESESLWLMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK 594 (676)
Q Consensus 519 ~~~~~~~~~~~f~~Al~~~~~--~~~~~lW~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~ 594 (676)
+.+.+...|.+++...+. ......+. ....+.. ........+..+........ ..............
T Consensus 145 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 215 (291)
T COG0457 145 ---DYEEALELYEKALELDPELNELAEALLA-LGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLYLKL 215 (291)
T ss_pred ---CHHHHHHHHHHHHhcCCCccchHHHHHH-hhhHHHHhcCHHHHHHHHHHHHhhCcccc-----hHHHHHhhHHHHHc
Confidence 467888888888773331 11111111 1111111 11223333444333221100 01111223335556
Q ss_pred cCHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817 595 DGIQQAREMYKRFLALPRPGLV-LYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (676)
Q Consensus 595 g~~~~Ar~iy~~al~~~p~~~~-l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~ 653 (676)
+.++.|...+..++...|.... +......+. ..+ ..+.+...+.+++...+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLL-ELG------RYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcC------CHHHHHHHHHHHHHhCcc
Confidence 6789999999999887766332 222222233 434 678999999999888763
Done!