Query 005817
Match_columns 676
No_of_seqs 325 out of 1789
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 5.7E-39 1.9E-43 362.2 42.8 438 77-673 51-559 (679)
2 2ooe_A Cleavage stimulation fa 100.0 4.5E-34 1.6E-38 318.9 43.8 431 80-674 1-482 (530)
3 4e6h_A MRNA 3'-END-processing 100.0 2.3E-32 7.8E-37 308.4 41.2 408 143-675 51-524 (679)
4 2uy1_A Cleavage stimulation fa 100.0 1.7E-30 6E-35 285.3 32.0 377 140-674 11-403 (493)
5 2ooe_A Cleavage stimulation fa 100.0 5E-28 1.7E-32 270.0 42.7 412 72-652 26-494 (530)
6 2uy1_A Cleavage stimulation fa 100.0 1.4E-29 4.9E-34 278.0 26.4 383 140-671 30-439 (493)
7 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-21 6E-26 207.5 44.9 371 140-669 15-387 (388)
8 2xpi_A Anaphase-promoting comp 99.9 2.3E-19 7.8E-24 202.2 48.1 434 140-663 133-592 (597)
9 1w3b_A UDP-N-acetylglucosamine 99.9 6.7E-19 2.3E-23 187.4 40.4 344 170-672 11-356 (388)
10 2ond_A Cleavage stimulation fa 99.9 1.3E-20 4.5E-25 194.5 25.0 243 154-497 4-275 (308)
11 2xpi_A Anaphase-promoting comp 99.9 6E-19 2E-23 198.8 39.4 310 307-673 214-568 (597)
12 2ond_A Cleavage stimulation fa 99.9 8.7E-20 3E-24 188.4 29.0 246 91-462 7-275 (308)
13 2y4t_A DNAJ homolog subfamily 99.8 2E-17 6.7E-22 179.3 38.9 360 143-653 11-413 (450)
14 3fp2_A TPR repeat-containing p 99.8 4.5E-17 1.5E-21 180.7 42.3 408 158-655 25-496 (537)
15 2gw1_A Mitochondrial precursor 99.8 1.4E-17 4.7E-22 183.4 37.3 432 138-662 20-490 (514)
16 3ieg_A DNAJ homolog subfamily 99.8 1.1E-16 3.6E-21 167.1 40.2 336 157-669 2-354 (359)
17 3fp2_A TPR repeat-containing p 99.8 1.3E-16 4.5E-21 176.9 39.8 417 140-618 41-499 (537)
18 2y4t_A DNAJ homolog subfamily 99.8 1.9E-16 6.4E-21 171.6 40.0 310 140-540 42-362 (450)
19 2gw1_A Mitochondrial precursor 99.8 1.3E-16 4.6E-21 175.5 37.4 404 138-621 53-489 (514)
20 3ieg_A DNAJ homolog subfamily 99.8 4.3E-16 1.5E-20 162.5 39.3 311 139-540 18-339 (359)
21 3hym_B Cell division cycle pro 99.7 1.5E-15 5.3E-20 156.5 31.4 267 139-508 37-315 (330)
22 4g1t_A Interferon-induced prot 99.7 5.3E-15 1.8E-19 161.3 31.9 370 140-615 67-464 (472)
23 3hym_B Cell division cycle pro 99.7 3.7E-15 1.3E-19 153.7 28.8 279 149-540 13-303 (330)
24 1fch_A Peroxisomal targeting s 99.7 3.1E-15 1.1E-19 157.2 23.7 283 141-536 42-359 (368)
25 4eqf_A PEX5-related protein; a 99.7 2.9E-15 9.9E-20 157.6 22.1 255 158-512 65-342 (365)
26 4g1t_A Interferon-induced prot 99.7 9.7E-14 3.3E-18 151.3 34.0 370 160-655 53-464 (472)
27 3cv0_A Peroxisome targeting si 99.7 2.5E-14 8.4E-19 147.2 27.2 268 160-537 23-316 (327)
28 4eqf_A PEX5-related protein; a 99.6 1.9E-14 6.4E-19 151.4 24.8 258 140-489 81-354 (365)
29 3cv0_A Peroxisome targeting si 99.6 4.9E-14 1.7E-18 145.0 24.2 267 140-494 37-317 (327)
30 1fch_A Peroxisomal targeting s 99.6 1.7E-13 5.9E-18 143.7 26.5 264 139-489 79-357 (368)
31 2h6f_A Protein farnesyltransfe 99.6 2.1E-13 7E-18 144.4 22.9 264 150-509 89-365 (382)
32 2pl2_A Hypothetical conserved 99.5 2.4E-12 8.3E-17 125.1 22.2 210 155-489 2-212 (217)
33 3uq3_A Heat shock protein STI1 99.5 7.7E-12 2.6E-16 123.6 23.3 234 158-503 5-253 (258)
34 2h6f_A Protein farnesyltransfe 99.5 1.9E-11 6.3E-16 129.3 26.7 244 140-474 113-365 (382)
35 3u4t_A TPR repeat-containing p 99.4 5.3E-12 1.8E-16 126.4 20.4 248 158-507 3-265 (272)
36 2ho1_A Type 4 fimbrial biogene 99.4 4.7E-11 1.6E-15 118.0 22.9 212 153-501 31-247 (252)
37 2vq2_A PILW, putative fimbrial 99.4 1E-10 3.5E-15 112.9 24.8 213 154-501 4-220 (225)
38 2q7f_A YRRB protein; TPR, prot 99.4 1.7E-11 5.9E-16 120.1 18.7 130 347-508 108-238 (243)
39 2pl2_A Hypothetical conserved 99.4 6.5E-11 2.2E-15 114.9 22.1 192 307-533 19-211 (217)
40 3u4t_A TPR repeat-containing p 99.3 2.7E-10 9.3E-15 113.7 26.0 235 344-625 17-265 (272)
41 3uq3_A Heat shock protein STI1 99.3 4.4E-10 1.5E-14 110.9 27.0 226 190-537 4-237 (258)
42 2ho1_A Type 4 fimbrial biogene 99.3 3.7E-10 1.3E-14 111.4 25.5 188 140-411 53-243 (252)
43 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.7E-10 5.7E-15 115.3 23.1 185 138-408 19-208 (275)
44 2vq2_A PILW, putative fimbrial 99.3 7.1E-10 2.4E-14 106.8 24.6 166 138-374 22-192 (225)
45 3vtx_A MAMA; tetratricopeptide 99.3 4.2E-10 1.5E-14 105.5 21.2 171 156-410 3-174 (184)
46 2q7f_A YRRB protein; TPR, prot 99.3 2E-10 7E-15 112.4 19.3 205 441-670 36-242 (243)
47 3mkr_A Coatomer subunit epsilo 99.3 9.6E-10 3.3E-14 111.8 24.6 184 308-540 80-268 (291)
48 4abn_A Tetratricopeptide repea 99.2 4.2E-10 1.4E-14 123.0 22.5 228 140-487 84-317 (474)
49 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.1E-09 1.1E-13 106.0 26.7 224 390-656 18-250 (275)
50 3mkr_A Coatomer subunit epsilo 99.2 1.4E-09 4.6E-14 110.7 23.7 188 442-657 79-271 (291)
51 3vtx_A MAMA; tetratricopeptide 99.2 1.4E-09 4.7E-14 101.9 20.8 153 344-538 19-172 (184)
52 4h7y_A Dual specificity protei 99.2 5.1E-10 1.8E-14 97.3 15.1 116 87-229 8-131 (161)
53 4abn_A Tetratricopeptide repea 99.2 3.2E-09 1.1E-13 115.9 23.7 185 308-511 117-306 (474)
54 4i17_A Hypothetical protein; T 99.1 1.9E-08 6.6E-13 97.7 26.4 152 155-374 4-163 (228)
55 2xm6_A Protein corresponding t 99.1 3.9E-06 1.3E-10 91.6 46.1 384 144-652 27-434 (490)
56 2xm6_A Protein corresponding t 99.1 1.4E-06 5E-11 95.1 41.6 353 139-612 58-434 (490)
57 4h7y_A Dual specificity protei 99.1 6.4E-10 2.2E-14 96.8 11.4 128 360-507 9-138 (161)
58 4i17_A Hypothetical protein; T 99.1 3.1E-08 1.1E-12 96.2 24.8 211 361-625 4-224 (228)
59 3sf4_A G-protein-signaling mod 99.1 5.8E-09 2E-13 110.2 21.1 293 139-511 24-361 (406)
60 4a1s_A PINS, partner of inscut 99.1 3.4E-09 1.2E-13 112.8 19.0 270 140-495 64-375 (411)
61 3ro2_A PINS homolog, G-protein 99.1 7.5E-09 2.6E-13 105.8 20.9 136 364-538 183-334 (338)
62 3ro2_A PINS homolog, G-protein 99.1 5.8E-09 2E-13 106.7 19.8 277 139-495 20-335 (338)
63 3sf4_A G-protein-signaling mod 99.1 8.5E-09 2.9E-13 109.0 21.6 271 157-537 8-337 (406)
64 4a1s_A PINS, partner of inscut 99.1 2.7E-09 9.2E-14 113.5 17.6 268 161-538 51-374 (411)
65 3dra_A Protein farnesyltransfe 99.0 9.3E-08 3.2E-12 97.2 26.9 245 173-505 49-301 (306)
66 4gyw_A UDP-N-acetylglucosamine 99.0 6.7E-09 2.3E-13 118.5 18.0 168 154-405 5-173 (723)
67 1ouv_A Conserved hypothetical 99.0 1.8E-07 6.3E-12 93.4 26.7 251 154-503 2-262 (273)
68 4gyw_A UDP-N-acetylglucosamine 99.0 1.4E-08 4.8E-13 115.8 18.9 169 323-536 5-174 (723)
69 3qky_A Outer membrane assembly 98.9 1.5E-07 5E-12 93.6 23.0 61 441-502 161-234 (261)
70 3as5_A MAMA; tetratricopeptide 98.9 5E-08 1.7E-12 90.3 17.7 167 159-409 9-176 (186)
71 3nf1_A KLC 1, kinesin light ch 98.9 8.6E-09 2.9E-13 104.6 13.3 248 153-494 22-309 (311)
72 3qky_A Outer membrane assembly 98.9 1.9E-07 6.5E-12 92.7 22.7 201 151-411 8-229 (261)
73 1ouv_A Conserved hypothetical 98.9 1.5E-06 5E-11 86.8 29.0 247 187-539 2-254 (273)
74 3as5_A MAMA; tetratricopeptide 98.9 9.3E-08 3.2E-12 88.4 17.5 152 345-538 23-175 (186)
75 4ga2_A E3 SUMO-protein ligase 98.8 1.1E-08 3.8E-13 92.7 10.5 131 350-512 17-149 (150)
76 3qou_A Protein YBBN; thioredox 98.8 1.7E-07 5.9E-12 94.8 19.5 170 323-536 113-284 (287)
77 3nf1_A KLC 1, kinesin light ch 98.8 3.3E-08 1.1E-12 100.2 13.5 242 187-538 23-309 (311)
78 2pzi_A Probable serine/threoni 98.8 5.4E-08 1.8E-12 111.1 15.7 168 306-509 404-580 (681)
79 1xi4_A Clathrin heavy chain; a 98.8 0.00011 3.6E-09 86.8 42.8 173 462-672 1195-1372(1630)
80 3urz_A Uncharacterized protein 98.7 3.1E-07 1.1E-11 88.0 17.8 22 390-411 170-191 (208)
81 2pzi_A Probable serine/threoni 98.7 9.4E-08 3.2E-12 109.1 15.9 165 140-376 407-580 (681)
82 4ga2_A E3 SUMO-protein ligase 98.7 2E-07 6.9E-12 84.3 14.9 129 390-549 10-140 (150)
83 2r5s_A Uncharacterized protein 98.7 1.3E-07 4.6E-12 87.8 13.6 151 344-536 20-173 (176)
84 3dss_A Geranylgeranyl transfer 98.7 1.2E-05 4E-10 82.2 28.9 248 140-470 46-317 (331)
85 2r5s_A Uncharacterized protein 98.7 9.4E-08 3.2E-12 88.9 12.0 168 155-406 3-173 (176)
86 3dra_A Protein farnesyltransfe 98.7 3E-06 1E-10 86.0 23.6 245 347-622 50-300 (306)
87 2vsy_A XCC0866; transferase, g 98.7 3.4E-07 1.2E-11 102.1 18.0 164 140-371 5-169 (568)
88 3qou_A Protein YBBN; thioredox 98.6 7.9E-07 2.7E-11 89.9 17.9 171 152-406 111-284 (287)
89 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.4E-06 8.3E-11 82.7 20.7 188 303-497 14-218 (225)
90 4gco_A Protein STI-1; structur 98.6 2.2E-07 7.6E-12 81.3 11.6 116 358-505 7-123 (126)
91 3edt_B KLC 2, kinesin light ch 98.6 4.1E-07 1.4E-11 90.4 15.1 224 173-489 17-279 (283)
92 4gco_A Protein STI-1; structur 98.6 6E-07 2.1E-11 78.5 13.9 95 139-234 28-123 (126)
93 3e4b_A ALGK; tetratricopeptide 98.6 3.7E-05 1.3E-09 83.0 31.1 81 442-534 231-314 (452)
94 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.6E-06 1.2E-10 81.5 20.8 192 158-409 4-216 (225)
95 3gyz_A Chaperone protein IPGC; 98.6 1.1E-07 3.7E-12 86.2 9.1 92 145-237 23-115 (151)
96 2vsy_A XCC0866; transferase, g 98.6 6.1E-07 2.1E-11 100.1 16.8 67 442-509 71-137 (568)
97 2vgx_A Chaperone SYCD; alterna 98.6 5.1E-07 1.7E-11 81.4 13.0 91 145-236 8-99 (148)
98 1xi4_A Clathrin heavy chain; a 98.6 8E-05 2.7E-09 87.8 34.1 161 339-556 1204-1368(1630)
99 3urz_A Uncharacterized protein 98.6 1.4E-06 4.7E-11 83.4 16.4 160 303-496 14-190 (208)
100 3gyz_A Chaperone protein IPGC; 98.6 1.9E-07 6.5E-12 84.6 9.5 113 353-497 25-138 (151)
101 2fo7_A Synthetic consensus TPR 98.6 2.1E-06 7.1E-11 74.4 15.9 131 366-538 3-134 (136)
102 2c2l_A CHIP, carboxy terminus 98.5 3.3E-06 1.1E-10 85.0 18.8 192 155-457 1-199 (281)
103 2xcb_A PCRH, regulatory protei 98.5 2.7E-07 9.4E-12 82.4 9.4 91 145-236 5-96 (142)
104 3dss_A Geranylgeranyl transfer 98.5 8.5E-05 2.9E-09 75.8 28.9 252 173-502 46-314 (331)
105 3q7a_A Farnesyltransferase alp 98.5 4.9E-05 1.7E-09 78.0 27.2 259 173-505 70-345 (349)
106 3ulq_A Response regulator aspa 98.5 1.2E-05 4.2E-10 84.4 22.3 189 308-536 158-368 (383)
107 3ulq_A Response regulator aspa 98.5 3.6E-06 1.2E-10 88.5 18.2 252 151-489 90-366 (383)
108 2vgx_A Chaperone SYCD; alterna 98.5 5.9E-07 2E-11 81.0 10.3 116 352-499 9-125 (148)
109 2e2e_A Formate-dependent nitri 98.4 2.8E-06 9.5E-11 78.6 14.5 98 139-237 25-126 (177)
110 2c2l_A CHIP, carboxy terminus 98.4 3.8E-06 1.3E-10 84.5 16.3 195 188-489 1-197 (281)
111 2xcb_A PCRH, regulatory protei 98.4 3.8E-07 1.3E-11 81.4 7.9 118 352-501 6-124 (142)
112 2fo7_A Synthetic consensus TPR 98.4 7.7E-06 2.6E-10 70.6 16.0 95 140-235 17-112 (136)
113 2e2e_A Formate-dependent nitri 98.4 1.4E-06 4.8E-11 80.6 11.7 122 347-500 27-152 (177)
114 1qqe_A Vesicular transport pro 98.4 5.8E-06 2E-10 83.6 17.2 129 345-502 133-279 (292)
115 3e4b_A ALGK; tetratricopeptide 98.4 8.9E-05 3E-09 79.9 27.7 315 139-536 18-351 (452)
116 3edt_B KLC 2, kinesin light ch 98.4 2.2E-06 7.4E-11 85.0 13.8 151 308-489 16-196 (283)
117 3upv_A Heat shock protein STI1 98.4 2.7E-06 9.3E-11 73.8 12.4 113 363-507 3-122 (126)
118 1elw_A TPR1-domain of HOP; HOP 98.4 5.1E-06 1.7E-10 70.2 13.9 96 140-236 20-116 (118)
119 1hz4_A MALT regulatory protein 98.4 7.1E-05 2.4E-09 78.0 24.4 265 170-537 26-323 (373)
120 1hz4_A MALT regulatory protein 98.3 0.0012 4.2E-08 68.5 33.5 191 307-536 67-282 (373)
121 3upv_A Heat shock protein STI1 98.3 6E-06 2.1E-10 71.5 13.0 97 139-236 19-122 (126)
122 2vyi_A SGTA protein; chaperone 98.3 4.2E-06 1.4E-10 72.1 11.9 119 361-511 9-128 (131)
123 1elw_A TPR1-domain of HOP; HOP 98.3 9.7E-06 3.3E-10 68.4 14.0 112 364-507 4-116 (118)
124 2lni_A Stress-induced-phosphop 98.3 4E-06 1.4E-10 72.7 11.4 118 361-510 13-131 (133)
125 1p5q_A FKBP52, FK506-binding p 98.3 2.3E-06 7.8E-11 88.7 11.1 132 349-512 132-279 (336)
126 2dba_A Smooth muscle cell asso 98.3 1E-05 3.6E-10 71.6 13.8 116 360-507 24-143 (148)
127 1na0_A Designed protein CTPR3; 98.3 1.4E-05 4.9E-10 68.0 14.2 116 361-508 5-122 (125)
128 1a17_A Serine/threonine protei 98.3 1.8E-05 6.3E-10 71.5 15.6 108 365-504 14-122 (166)
129 1qqe_A Vesicular transport pro 98.3 4.6E-05 1.6E-09 76.9 19.8 89 391-498 132-234 (292)
130 2vyi_A SGTA protein; chaperone 98.3 1.7E-05 5.8E-10 68.2 14.4 97 140-237 28-125 (131)
131 3q7a_A Farnesyltransferase alp 98.3 5.5E-05 1.9E-09 77.6 20.1 240 347-622 71-344 (349)
132 1hxi_A PEX5, peroxisome target 98.2 3.5E-06 1.2E-10 72.9 9.2 87 140-227 33-120 (121)
133 1hxi_A PEX5, peroxisome target 98.2 1.7E-05 5.7E-10 68.5 13.2 76 161-237 20-96 (121)
134 1a17_A Serine/threonine protei 98.2 5.1E-05 1.8E-09 68.5 17.2 95 139-234 28-123 (166)
135 3q49_B STIP1 homology and U bo 98.2 1.2E-05 4.1E-10 70.4 12.1 116 359-506 4-125 (137)
136 2lni_A Stress-induced-phosphop 98.2 1.2E-05 4.1E-10 69.6 12.0 97 140-237 32-129 (133)
137 3sz7_A HSC70 cochaperone (SGT) 98.2 7.2E-06 2.5E-10 74.8 10.9 111 362-504 9-120 (164)
138 1na0_A Designed protein CTPR3; 98.2 3.1E-05 1.1E-09 65.8 14.4 96 140-236 25-121 (125)
139 3q15_A PSP28, response regulat 98.2 4.6E-05 1.6E-09 79.9 18.5 239 165-489 108-363 (378)
140 3sz7_A HSC70 cochaperone (SGT) 98.2 9.9E-06 3.4E-10 73.9 11.6 92 140-232 27-119 (164)
141 3q49_B STIP1 homology and U bo 98.2 1.5E-05 5E-10 69.9 11.8 97 140-237 25-127 (137)
142 2kck_A TPR repeat; tetratricop 98.2 1.2E-05 4E-10 67.2 10.4 105 360-496 2-110 (112)
143 3q15_A PSP28, response regulat 98.1 0.00061 2.1E-08 71.2 25.5 155 345-538 116-292 (378)
144 4f3v_A ESX-1 secretion system 98.1 1.3E-05 4.3E-10 79.7 11.4 126 345-504 117-248 (282)
145 2dba_A Smooth muscle cell asso 98.1 2.1E-05 7.3E-10 69.5 12.0 96 140-236 44-143 (148)
146 1zu2_A Mitochondrial import re 98.1 2E-05 6.8E-10 70.8 11.5 90 138-227 16-126 (158)
147 1hh8_A P67PHOX, NCF-2, neutrop 98.1 6.8E-05 2.3E-09 71.1 14.8 120 390-540 19-154 (213)
148 1p5q_A FKBP52, FK506-binding p 98.0 7.8E-05 2.7E-09 76.9 16.2 105 140-245 163-283 (336)
149 2xev_A YBGF; tetratricopeptide 98.0 7.7E-05 2.6E-09 64.3 13.7 96 140-236 18-120 (129)
150 2xev_A YBGF; tetratricopeptide 98.0 7.7E-05 2.6E-09 64.3 13.5 100 390-508 15-121 (129)
151 1dce_A Protein (RAB geranylger 98.0 0.00026 8.8E-09 78.5 20.5 169 140-375 45-237 (567)
152 3k9i_A BH0479 protein; putativ 98.0 1.2E-05 4E-10 68.8 7.3 89 441-540 3-94 (117)
153 3k9i_A BH0479 protein; putativ 98.0 1.1E-05 3.8E-10 69.0 6.9 89 140-229 6-98 (117)
154 1b89_A Protein (clathrin heavy 98.0 0.00038 1.3E-08 73.3 19.7 237 139-511 18-255 (449)
155 4f3v_A ESX-1 secretion system 98.0 6.5E-05 2.2E-09 74.6 13.0 196 442-661 20-247 (282)
156 2fbn_A 70 kDa peptidylprolyl i 98.0 9.3E-05 3.2E-09 69.6 13.6 99 140-239 54-169 (198)
157 2kck_A TPR repeat; tetratricop 97.9 5.7E-05 1.9E-09 62.9 10.6 85 140-225 22-110 (112)
158 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 2.4E-05 8.3E-10 84.5 10.0 131 352-511 256-399 (457)
159 3rkv_A Putative peptidylprolyl 97.9 7.1E-05 2.4E-09 67.9 11.4 97 139-236 26-142 (162)
160 2if4_A ATFKBP42; FKBP-like, al 97.9 1.5E-05 5.1E-10 82.5 7.3 137 364-538 179-330 (338)
161 1elr_A TPR2A-domain of HOP; HO 97.9 7.5E-05 2.6E-09 64.0 10.7 112 364-508 4-123 (131)
162 2kat_A Uncharacterized protein 97.9 4.4E-05 1.5E-09 64.8 8.9 81 143-224 4-85 (115)
163 3esl_A Checkpoint serine/threo 97.9 0.00039 1.3E-08 64.3 15.5 140 72-238 6-162 (202)
164 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00015 5.1E-09 68.2 13.3 103 390-511 51-170 (198)
165 1b89_A Protein (clathrin heavy 97.8 5.5E-05 1.9E-09 79.7 10.2 277 308-672 18-299 (449)
166 2kat_A Uncharacterized protein 97.8 0.00021 7.2E-09 60.4 12.3 83 446-539 3-85 (115)
167 1elr_A TPR2A-domain of HOP; HO 97.8 0.00021 7.2E-09 61.1 12.5 97 139-237 19-123 (131)
168 1dce_A Protein (RAB geranylger 97.8 0.0015 5E-08 72.4 21.2 182 346-549 45-232 (567)
169 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00021 7.3E-09 77.1 14.2 103 140-243 284-402 (457)
170 2if4_A ATFKBP42; FKBP-like, al 97.8 5.9E-05 2E-09 77.9 9.3 95 140-235 195-307 (338)
171 3rkv_A Putative peptidylprolyl 97.8 0.00028 9.7E-09 63.8 12.9 101 390-506 24-141 (162)
172 4aez_C MAD3, mitotic spindle c 97.8 0.00082 2.8E-08 63.2 15.9 135 71-238 48-197 (223)
173 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00041 1.4E-08 65.6 14.3 116 346-496 22-154 (213)
174 4gcn_A Protein STI-1; structur 97.7 0.00024 8.1E-09 61.7 11.5 90 139-230 23-120 (127)
175 3mv2_B Coatomer subunit epsilo 97.7 0.0021 7E-08 64.7 19.6 190 447-665 85-296 (310)
176 4gcn_A Protein STI-1; structur 97.7 0.00015 5.2E-09 62.9 10.1 88 441-539 21-115 (127)
177 1na3_A Designed protein CTPR2; 97.7 0.00036 1.2E-08 55.7 10.6 80 156-236 7-87 (91)
178 2wvi_A Mitotic checkpoint seri 97.7 0.002 7E-08 57.7 16.3 129 77-239 2-144 (164)
179 1ihg_A Cyclophilin 40; ppiase 97.6 0.00035 1.2E-08 73.1 12.7 100 140-240 239-355 (370)
180 2ifu_A Gamma-SNAP; membrane fu 97.6 0.00076 2.6E-08 68.4 15.0 193 441-653 4-226 (307)
181 1ihg_A Cyclophilin 40; ppiase 97.6 0.00025 8.6E-09 74.1 11.6 114 366-511 225-355 (370)
182 1zu2_A Mitochondrial import re 97.6 0.00018 6.2E-09 64.6 8.8 96 441-540 15-124 (158)
183 2hr2_A Hypothetical protein; a 97.6 0.00027 9.1E-09 63.6 9.9 89 441-540 24-135 (159)
184 3rjv_A Putative SEL1 repeat pr 97.5 0.0029 9.8E-08 60.2 17.0 186 143-407 5-198 (212)
185 4a1g_A Mitotic checkpoint seri 97.5 0.0013 4.4E-08 58.1 13.0 126 75-236 7-146 (152)
186 1wao_1 Serine/threonine protei 97.5 0.00047 1.6E-08 74.8 12.2 97 138-235 20-117 (477)
187 3u3w_A Transcriptional activat 97.5 0.0025 8.7E-08 63.8 17.0 155 344-536 89-266 (293)
188 3ma5_A Tetratricopeptide repea 97.5 0.00014 4.9E-09 60.0 6.4 72 153-225 2-74 (100)
189 1wao_1 Serine/threonine protei 97.5 0.00019 6.6E-09 77.8 9.0 98 390-506 19-117 (477)
190 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0015 5E-08 66.2 14.9 192 307-539 5-226 (307)
191 3bee_A Putative YFRE protein; 97.5 0.00067 2.3E-08 55.3 9.6 77 154-233 2-82 (93)
192 3rjv_A Putative SEL1 repeat pr 97.4 0.0076 2.6E-07 57.2 18.4 188 312-537 5-198 (212)
193 2hr2_A Hypothetical protein; a 97.3 0.00064 2.2E-08 61.1 8.8 96 140-236 27-146 (159)
194 3ma5_A Tetratricopeptide repea 97.3 0.0013 4.6E-08 54.0 9.9 71 457-538 2-72 (100)
195 3u3w_A Transcriptional activat 97.3 0.0058 2E-07 61.1 16.2 157 305-489 87-264 (293)
196 1na3_A Designed protein CTPR2; 97.3 0.0012 4.1E-08 52.5 9.0 68 441-509 22-89 (91)
197 2l6j_A TPR repeat-containing p 97.3 0.0021 7.3E-08 53.2 10.9 68 157-225 3-71 (111)
198 3mv2_B Coatomer subunit epsilo 97.1 0.026 8.8E-07 56.6 19.0 182 312-539 85-285 (310)
199 2qfc_A PLCR protein; TPR, HTH, 97.1 0.015 5.1E-07 58.1 17.7 174 155-406 72-266 (293)
200 2l6j_A TPR repeat-containing p 97.1 0.0025 8.4E-08 52.8 9.5 70 441-511 17-92 (111)
201 3u64_A Protein TP_0956; tetrat 97.1 0.0031 1E-07 62.1 11.0 100 136-235 175-286 (301)
202 2qfc_A PLCR protein; TPR, HTH, 97.1 0.038 1.3E-06 55.1 19.6 84 441-535 88-183 (293)
203 3gw4_A Uncharacterized protein 97.0 0.017 5.8E-07 53.5 15.7 85 441-536 5-95 (203)
204 3gw4_A Uncharacterized protein 97.0 0.0055 1.9E-07 56.9 12.1 137 362-537 24-177 (203)
205 3u64_A Protein TP_0956; tetrat 96.9 0.049 1.7E-06 53.5 17.9 126 354-495 142-272 (301)
206 2kc7_A BFR218_protein; tetratr 96.9 0.007 2.4E-07 49.0 10.0 57 173-230 16-73 (99)
207 2kc7_A BFR218_protein; tetratr 96.8 0.0042 1.4E-07 50.4 8.6 60 441-501 13-73 (99)
208 3ro3_A PINS homolog, G-protein 96.8 0.0085 2.9E-07 52.7 11.0 134 366-536 11-158 (164)
209 4b4t_Q 26S proteasome regulato 96.7 0.026 8.9E-07 59.5 15.6 195 441-652 17-247 (434)
210 4a1g_A Mitotic checkpoint seri 96.6 0.052 1.8E-06 47.8 14.1 137 523-668 6-149 (152)
211 3ly7_A Transcriptional activat 96.6 0.22 7.4E-06 51.0 20.6 152 354-541 184-344 (372)
212 3esl_A Checkpoint serine/threo 96.6 0.084 2.9E-06 48.7 15.8 141 522-668 7-163 (202)
213 4g26_A Pentatricopeptide repea 96.5 0.13 4.4E-06 55.7 19.7 172 464-650 28-204 (501)
214 3ro3_A PINS homolog, G-protein 96.5 0.031 1.1E-06 48.9 12.3 140 462-652 9-160 (164)
215 4b4t_Q 26S proteasome regulato 96.2 0.068 2.3E-06 56.2 15.6 168 465-652 7-206 (434)
216 1pc2_A Mitochondria fission pr 96.2 0.037 1.3E-06 48.9 10.9 92 138-230 12-109 (152)
217 4g26_A Pentatricopeptide repea 96.0 0.94 3.2E-05 48.9 23.3 160 344-535 40-203 (501)
218 3bee_A Putative YFRE protein; 95.9 0.033 1.1E-06 45.0 8.6 71 458-539 2-75 (93)
219 3ly7_A Transcriptional activat 95.6 0.75 2.6E-05 47.0 18.9 156 317-497 184-344 (372)
220 2wvi_A Mitotic checkpoint seri 94.8 0.37 1.3E-05 43.0 12.2 132 528-668 4-144 (164)
221 3n71_A Histone lysine methyltr 94.7 0.15 5E-06 55.0 11.2 85 390-489 322-420 (490)
222 4aez_C MAD3, mitotic spindle c 94.2 0.84 2.9E-05 42.8 13.5 136 523-667 51-197 (223)
223 1klx_A Cysteine rich protein B 94.0 0.95 3.2E-05 39.1 13.2 115 389-536 7-126 (138)
224 1pc2_A Mitochondria fission pr 93.4 0.47 1.6E-05 41.8 9.8 89 441-540 11-104 (152)
225 3n71_A Histone lysine methyltr 92.9 0.22 7.4E-06 53.7 8.4 84 441-535 322-421 (490)
226 3qww_A SET and MYND domain-con 92.7 0.24 8.3E-06 52.3 8.3 84 442-536 312-411 (433)
227 2v5f_A Prolyl 4-hydroxylase su 92.7 0.82 2.8E-05 37.3 10.0 73 162-235 9-89 (104)
228 2v5f_A Prolyl 4-hydroxylase su 92.1 0.57 2E-05 38.2 8.2 63 441-504 18-87 (104)
229 1klx_A Cysteine rich protein B 91.5 3.2 0.00011 35.6 12.9 82 392-490 40-125 (138)
230 3qwp_A SET and MYND domain-con 90.6 0.6 2.1E-05 49.3 8.5 85 441-536 300-400 (429)
231 3qww_A SET and MYND domain-con 89.0 1 3.5E-05 47.5 8.8 84 391-489 312-409 (433)
232 1nzn_A CGI-135 protein, fissio 87.1 3.6 0.00012 34.8 9.3 89 139-229 16-111 (126)
233 3qwp_A SET and MYND domain-con 84.7 2.8 9.6E-05 44.1 9.2 85 390-489 300-398 (429)
234 4gns_B Protein CSD3, chitin bi 81.4 5.4 0.00018 44.9 10.1 49 463-512 338-386 (754)
235 1y8m_A FIS1; mitochondria, unk 73.4 40 0.0014 29.0 11.0 85 140-227 22-112 (144)
236 1nzn_A CGI-135 protein, fissio 70.1 40 0.0014 28.3 10.2 88 442-540 15-107 (126)
237 4gns_B Protein CSD3, chitin bi 65.6 47 0.0016 37.3 12.6 47 441-487 350-396 (754)
238 3mkq_A Coatomer beta'-subunit; 61.6 2E+02 0.0069 31.9 17.7 136 470-652 660-797 (814)
239 3o48_A Mitochondria fission 1 60.4 63 0.0022 27.4 9.5 85 140-227 23-113 (134)
240 3o48_A Mitochondria fission 1 57.8 87 0.003 26.5 13.4 93 390-498 20-113 (134)
241 1zbp_A Hypothetical protein VP 57.6 35 0.0012 32.8 8.4 55 441-496 10-64 (273)
242 3kae_A CDC27, possible protein 55.0 83 0.0028 28.0 9.5 54 442-496 76-147 (242)
243 3spa_A Mtrpol, DNA-directed RN 50.7 1.1E+02 0.0038 35.6 12.4 86 441-535 140-229 (1134)
244 3mkq_A Coatomer beta'-subunit; 44.3 90 0.0031 34.9 10.9 43 442-489 666-708 (814)
245 1y8m_A FIS1; mitochondria, unk 43.9 1.5E+02 0.0053 25.3 13.5 93 390-498 19-112 (144)
246 2w2u_A Hypothetical P60 katani 41.2 63 0.0022 24.8 6.1 44 441-507 13-56 (83)
247 2ff4_A Probable regulatory pro 41.2 63 0.0022 33.0 8.1 44 467-511 176-219 (388)
248 2ff4_A Probable regulatory pro 41.1 81 0.0028 32.2 8.9 47 173-220 187-233 (388)
249 3txn_A 26S proteasome regulato 37.9 3.4E+02 0.012 27.6 16.5 167 465-652 22-212 (394)
250 1wy6_A Hypothetical protein ST 37.1 2E+02 0.0068 24.7 9.7 50 441-490 104-153 (172)
251 3txn_A 26S proteasome regulato 36.8 3.5E+02 0.012 27.5 14.0 60 586-651 104-169 (394)
252 2v6y_A AAA family ATPase, P60 26.2 1.2E+02 0.0042 23.1 5.5 41 443-506 7-47 (83)
253 3spa_A Mtrpol, DNA-directed RN 26.1 4.9E+02 0.017 30.4 12.4 94 390-501 140-240 (1134)
254 3mkq_B Coatomer subunit alpha; 23.1 4E+02 0.014 23.6 14.3 34 473-512 16-49 (177)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=5.7e-39 Score=362.25 Aligned_cols=438 Identities=11% Similarity=0.087 Sum_probs=326.3
Q ss_pred hhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCC
Q 005817 77 QRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKG 156 (676)
Q Consensus 77 ~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~ 156 (676)
+...||..|.++|.+...|++||+++... ..+.+++.+|+|++..||.
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~--------------------------------~~~~~aR~vyEraL~~fP~ 98 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSL--------------------------------KQWKQVYETFDKLHDRFPL 98 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhc--------------------------------CcHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999997531 1357889999999999999
Q ss_pred CHHHHHHHHHHHHHccC----chHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHh--
Q 005817 157 DIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHP--KVPGVWIYAAAWEFDHNLN-------VTAARALMQNGLRV-- 221 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~P--~~~~lW~~~a~~e~~~~~~-------~~~Ar~~~~ral~~-- 221 (676)
+..+|..|++++.+.+. ..++.+|+|||..+| .++++|..|+.+..+.++. .+.+|.+|++|+..
T Consensus 99 ~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG 178 (679)
T 4e6h_A 99 MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA 178 (679)
T ss_dssp CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 99999999999988753 578999999999994 5889999999998654432 24567999999985
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhh
Q 005817 222 --CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQK 299 (676)
Q Consensus 222 --~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (676)
+|.+..+|..|+.|+.... .. ..++
T Consensus 179 ~~d~~s~~iW~~Yi~f~~~~~----------~~------------------------------------------~~~e- 205 (679)
T 4e6h_A 179 IFEPKSIQFWNEYLHFLEHWK----------PV------------------------------------------NKFE- 205 (679)
T ss_dssp TTCSSCHHHHHHHHHHHHTCC----------CC------------------------------------------SHHH-
T ss_pred cccccchHHHHHHHHHHHhcc----------cc------------------------------------------CcHH-
Confidence 5668899999999987530 00 0000
Q ss_pred hhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccC
Q 005817 300 SVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSV 379 (676)
Q Consensus 300 ~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~ 379 (676)
..+.++.++.+|++|+. +|... ...++..|..|+.......++.++....
T Consensus 206 -----eq~~~~~~R~iy~raL~-iP~~~--~~~~w~~Y~~fe~~~~~~~a~~~~~e~~---------------------- 255 (679)
T 4e6h_A 206 -----EQQRVQYIRKLYKTLLC-QPMDC--LESMWQRYTQWEQDVNQLTARRHIGELS---------------------- 255 (679)
T ss_dssp -----HHHHHHHHHHHHHHHTT-SCCSS--HHHHHHHHHHHHHHHCTTTHHHHHHHHH----------------------
T ss_pred -----HHhHHHHHHHHHHHHHh-CccHH--HHHHHHHHHHHHHhcCcchHHHHHHHhh----------------------
Confidence 01256789999999996 55431 2233344455542111112233222211
Q ss_pred CCCCCCcCcchhHHHHHHHHHHH------Hhhc-------------cCc--------hhHHHHHHHHHHHHhcCcccccc
Q 005817 380 SKDGTSEDIVPSQMQKAIQVYEE------ALKN-------------VPS--------SMIFDLYTKFLMDMIAPKKEETR 432 (676)
Q Consensus 380 ~~~~~~~~~~~~~~~~A~~~ye~------al~~-------------~~~--------~~lw~~y~~~~~~~~~~~~~d~~ 432 (676)
..++.|+.+|.+ +|.. +|. ..+|..|+.|+...... .++
T Consensus 256 -----------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~-l~~-- 321 (679)
T 4e6h_A 256 -----------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE-LSD-- 321 (679)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTC-CCH--
T ss_pred -----------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCcc-ccc--
Confidence 122333333322 2211 120 13899999998862110 000
Q ss_pred CCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR-KLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 433 ~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~-~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
....++++.+|++|+...|..+++|+.|+.++...|+.++|+ .+|++|+ ..+|.+..+|..++.++...+
T Consensus 322 --------~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi-~~~P~s~~Lwl~~a~~ee~~~ 392 (679)
T 4e6h_A 322 --------DLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ-QCIPNSAVLAFSLSEQYELNT 392 (679)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT
T ss_pred --------hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhC
Confidence 123567889999999999999999999999999999999996 9999999 899999999999999999876
Q ss_pred cccCCCCChhchHHHHHHHHHHHhhc-----------Ch---------hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Q 005817 512 TRNSFSPSKADILSIFELLKCILTKV-----------SA---------LESESLWLMALKFFMNQK--HYFDKLVEIALI 569 (676)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~f~~Al~~~-----------~~---------~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~ 569 (676)
++++++++|++++..+ |. .....+|..|+.+..+.+ +.++++|++|++
T Consensus 393 ----------~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 393 ----------KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4899999999999864 21 023458999987654443 568889999886
Q ss_pred hhhhCCCCCCCcchHHHHHHHHHHhcC-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHH
Q 005817 570 SVAKDGGGESGFSLPSAIINLVIQKDG-IQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESAL 648 (676)
Q Consensus 570 ~~~~~~~~~~~~~~~~~y~~~~~~~g~-~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al 648 (676)
..++. ...++..++.++.+.++ .++||+||++++...|.+..+|..|++||...+ +.++||++|++|+
T Consensus 463 ~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~------~~~~AR~lferal 531 (679)
T 4e6h_A 463 LKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN------EESQVKSLFESSI 531 (679)
T ss_dssp TGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHT
T ss_pred hcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 52222 13444456667777654 899999999999999999999999999999988 8999999999999
Q ss_pred hhCC---CCchHHHHHHHHHhhcCCccc
Q 005817 649 ATYD---QNTSLWRDYYSTETKVSFSLL 673 (676)
Q Consensus 649 ~~~~---~~~~lW~~y~~fE~~~G~~~~ 673 (676)
...| ....+|..|++||.++|+.+.
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9987 345999999999999999864
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=4.5e-34 Score=318.88 Aligned_cols=431 Identities=14% Similarity=0.151 Sum_probs=320.2
Q ss_pred HhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCCHH
Q 005817 80 KFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGDIE 159 (676)
Q Consensus 80 ~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~~~ 159 (676)
.||..|..+|.+...|+.|+++ ... +...+++.+|++++..+|.+..
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~--------------------------------~~~~~a~~~~e~al~~~P~~~~ 47 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQN--------------------------------QPIDKARKTYERLVAQFPSSGR 47 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHS--------------------------------SCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHh--------------------------------CCHHHHHHHHHHHHHHCCCCHH
Confidence 3789999999999999999985 211 1257889999999999999999
Q ss_pred HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHhC---CCCHHHHHH
Q 005817 160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARA----LMQNGLRVC---PTSEELWVE 231 (676)
Q Consensus 160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~----~~~ral~~~---p~~~~lW~~ 231 (676)
+|..|++++.+.| .+.++.+|++|+..+| ++.+|+.|+.+..+..|+++.||. +|++++..+ |.+..+|..
T Consensus 48 ~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~ 126 (530)
T 2ooe_A 48 FWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVD 126 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 9999999999887 5789999999999999 688999999988777788877665 999998764 567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHH
Q 005817 232 YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRV 311 (676)
Q Consensus 232 y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (676)
|+.|+.... ... . + ...++++.
T Consensus 127 ~~~~~~~~~----------~~~-------------------------~-----------------~------~~~~~~~~ 148 (530)
T 2ooe_A 127 YINFLKGVE----------AVG-------------------------S-----------------Y------AENQRITA 148 (530)
T ss_dssp HHHHHHHSC----------CCS-------------------------S-----------------T------THHHHHHH
T ss_pred HHHHHhcCC----------Ccc-------------------------c-----------------H------HHHhHHHH
Confidence 999987530 000 0 0 01246789
Q ss_pred HHHHHHHHHhcCCCch--hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817 312 LQTIYSGAVEALPSSF--NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (676)
Q Consensus 312 a~~iy~~Al~~~p~~~--~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~ 389 (676)
|+.+|++|++ .|... .+|.. +..|+.......+..++.. .
T Consensus 149 a~~~y~~al~-~P~~~~~~~~~~----~~~~e~~~~~~~~~~~l~~---------------------------------~ 190 (530)
T 2ooe_A 149 VRRVYQRGCV-NPMINIEQLWRD----YNKYEEGINIHLAKKMIED---------------------------------R 190 (530)
T ss_dssp HHHHHHHHTT-SCCTTHHHHHHH----HHHHHHHHCHHHHHHHHHT---------------------------------T
T ss_pred HHHHHHHHHh-chhhhHHHHHHH----HHHHHHhhchhHHHHHHHH---------------------------------h
Confidence 9999999999 66542 34443 3334311111111111110 1
Q ss_pred hhHHHHHHHHHHH------Hhhc----cC-c--------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 390 PSQMQKAIQVYEE------ALKN----VP-S--------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 390 ~~~~~~A~~~ye~------al~~----~~-~--------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
.+++..|+.+|++ +++. +| + ..+|..|+.++...... .++. .....++..+
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~-~~~~---------~~~~~~a~~~ 260 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR-TEDQ---------TLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC-CSCS---------HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc-CCcc---------hhHHHHHHHH
Confidence 3456667776665 5543 23 2 24999999988762110 0010 1123578899
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhc-cCCChHHHHHHHHHHHHHhccccC
Q 005817 451 YEKAEAMGCLTEDIAHRYVTLYLQ-------LGKLD-------EARKLAAKLCSG-KLSDSVQLWLLRISVEIRCVTRNS 515 (676)
Q Consensus 451 ye~al~~~p~~~~lw~~~~~l~~~-------~~~~~-------~A~~l~~~al~~-~~P~~~~lW~~~i~l~~~~~~~~~ 515 (676)
|++|+..+|.++++|+.|+.++.+ .|+++ +|+.++++|+ + .+|++..+|..++.++...|
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al-~~~~p~~~~l~~~~~~~~~~~g---- 335 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI-STLLKKNMLLYFAYADYEESRM---- 335 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-TTTCSSCHHHHHHHHHHHHHTT----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHhcC----
Confidence 999999999999999999999986 68876 8999999999 6 68999999999999998876
Q ss_pred CCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH-
Q 005817 516 FSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI- 592 (676)
Q Consensus 516 ~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~- 592 (676)
+.++++++|++++...|. ....+|..++.++.+.+ +.++.+|++|+.. .|.. .......+..+.
T Consensus 336 ------~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~-----~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 336 ------KYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTR-----HHVYVTAALMEYY 402 (530)
T ss_dssp ------CHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCC-----THHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCCc-----hHHHHHHHHHHHH
Confidence 489999999999985443 22348988776554333 4567778877753 2211 111111122222
Q ss_pred HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc----hHHHHHHHHHhhc
Q 005817 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT----SLWRDYYSTETKV 668 (676)
Q Consensus 593 ~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~----~lW~~y~~fE~~~ 668 (676)
..|+.++|+.+|++++..+|.+..+|..++.++...| +.++||.+|++|+...|.++ .+|..|++||..+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g------~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN------EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT------CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC------CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999999999988 89999999999999876443 5999999999999
Q ss_pred CCcccC
Q 005817 669 SFSLLC 674 (676)
Q Consensus 669 G~~~~~ 674 (676)
|+.+.+
T Consensus 477 G~~~~~ 482 (530)
T 2ooe_A 477 GDLASI 482 (530)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 997653
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=2.3e-32 Score=308.41 Aligned_cols=408 Identities=11% Similarity=0.123 Sum_probs=302.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Q 005817 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN---VTAARALMQNG 218 (676)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~---~~~Ar~~~~ra 218 (676)
....|+++|..+|.|+..|..|++++.+.+ ...++.+|++++..+|.++.+|+.|+.+|. ..++ ++.|+.+|+||
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~-~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF-DKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-hhCCcchHHHHHHHHHHH
Confidence 356889999999999999999999998876 478999999999999999999999999997 6778 99999999999
Q ss_pred HHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 219 LRVCP--TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 219 l~~~p--~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
|..+| .+.++|..|++|.....+. . .+
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~-----------~--------------------------------------~~-- 158 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDI-----------I--------------------------------------TG-- 158 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCS-----------T--------------------------------------TT--
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhccc-----------c--------------------------------------cc--
Confidence 99994 5789999999997653100 0 00
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCC----chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPS----SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR 372 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~----~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~ 372 (676)
.+...+.++.+|++|+..++. +..+|..|+++....+... .
T Consensus 159 --------~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~---------------------------~ 203 (679)
T 4e6h_A 159 --------GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN---------------------------K 203 (679)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS---------------------------H
T ss_pred --------cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC---------------------------c
Confidence 001345678999999986544 4567776655443322100 0
Q ss_pred HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~ 449 (676)
.+ -.+++++++.+|+++|. +|. ..+|..|..|+.+.... ... .........+..|+.
T Consensus 204 ~e--------------eq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~-~a~----~~~~e~~~~y~~Ar~ 263 (679)
T 4e6h_A 204 FE--------------EQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQL-TAR----RHIGELSAQYMNARS 263 (679)
T ss_dssp HH--------------HHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTT-THH----HHHHHHHHHHHHHHH
T ss_pred HH--------------HHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcc-hHH----HHHHHhhHHHHHHHH
Confidence 00 03467899999999995 674 34999999998763110 000 000011234556677
Q ss_pred HHHHH------HHc-CCC-------------------cHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhccCCCh
Q 005817 450 VYEKA------EAM-GCL-------------------TEDIAHRYVTLYLQLG-------KLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 450 iye~a------l~~-~p~-------------------~~~lw~~~~~l~~~~~-------~~~~A~~l~~~al~~~~P~~ 496 (676)
+|... +.. .|. ...+|..|+.++..++ ..+.++.+|++++ ..+|++
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL-~~~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA-QHVCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH-HHcCCC
Confidence 66542 111 111 1378999999998764 2345678999999 899999
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhchHHHH-HHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhh-
Q 005817 497 VQLWLLRISVEIRCVTRNSFSPSKADILSIF-ELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVA- 572 (676)
Q Consensus 497 ~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~-~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~- 572 (676)
+++|..|++++...+. .++++ ++|++|+..+|. +..||..++.+.+..+ +.++.+|++++..+.
T Consensus 343 ~~lW~~ya~~~~~~~~----------~~~a~r~il~rAi~~~P~--s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNT----------DSTVITKYLKLGQQCIPN--SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHHHHHHHHHSC----------CTTHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 56775 999999999985 4678999988776654 567788888876431
Q ss_pred ------hCCCCC---------CCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhccCCCCccc
Q 005817 573 ------KDGGGE---------SGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLYQNCIELENNLASVGDKDS 636 (676)
Q Consensus 573 ------~~~~~~---------~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~~~l~~~~i~lE~~~~~~~~~~~ 636 (676)
+..+.. ....++..|+.++.+.|+++.||++|++|+.. ++....+|..++.||...+. +
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~-----d 485 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK-----D 485 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS-----C
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC-----C
Confidence 111000 01123448999999999999999999999988 66667899999999988651 5
Q ss_pred hHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcccCC
Q 005817 637 LVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLCF 675 (676)
Q Consensus 637 ~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~~~ 675 (676)
.++||++|+++++.+|+++.+|+.|++||...|+.++|+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 899999999999999999999999999999999887653
No 4
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.98 E-value=1.7e-30 Score=285.34 Aligned_cols=377 Identities=14% Similarity=0.108 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGL 219 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral 219 (676)
+.+++.+|++++..||. ...++++.+|+|||..+| ++++|..|+.++.+.+...+.+|.+|++|+
T Consensus 11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 56789999999999997 125689999999999999 889999999999865445677899999999
Q ss_pred Hh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 220 RV---CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 220 ~~---~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
.. +|.+..+|..|++|+.....
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~------------------------------------------------------- 100 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIED------------------------------------------------------- 100 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSS-------------------------------------------------------
T ss_pred HHcCCCcccHHHHHHHHHHHHhchh-------------------------------------------------------
Confidence 87 56789999999999653100
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
..++.+.++.||++|+..++.+ ...++..|..|+.......+..++...
T Consensus 101 --------~~~~~~~vR~iy~rAL~~P~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~-------------------- 149 (493)
T 2uy1_A 101 --------EQTRIEKIRNGYMRALQTPMGS---LSELWKDFENFELELNKITGKKIVGDT-------------------- 149 (493)
T ss_dssp --------HHHHHHHHHHHHHHHHTSCCTT---HHHHHHHHHHHHHHHCHHHHHHHHHHH--------------------
T ss_pred --------hhHHHHHHHHHHHHHHhChhhh---HHHHHHHHHHHHHHhccccHHHHHHHH--------------------
Confidence 0125678999999999953332 234455556665322222233332221
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a 454 (676)
.+.+..|+.+|+++....+. ..+|..|++++.+.... ..+ .+..++++.+|++|
T Consensus 150 -------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~-~~~----------~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 150 -------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK-LGG----------RPHESRMHFIHNYI 205 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC-CCH----------HHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc-Ccc----------hhhHHHHHHHHHHH
Confidence 23466778888877765442 34999999998742110 100 12356788999999
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817 455 EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (676)
Q Consensus 455 l~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al 534 (676)
+...|.++++|+.|+.++.+.|+.+.|+.++++|+ +. |++..+|..|+.+... +++.+.+.++.
T Consensus 206 l~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi-~~-P~~~~l~~~y~~~~e~--------------~~~~~~l~~~~ 269 (493)
T 2uy1_A 206 LDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI-EM-SDGMFLSLYYGLVMDE--------------EAVYGDLKRKY 269 (493)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-CCSSHHHHHHHHHTTC--------------THHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hC-CCcHHHHHHHHhhcch--------------hHHHHHHHHHH
Confidence 99999999999999999999999999999999999 77 9999999988766311 11111111111
Q ss_pred h--------hcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhc-CHHHHHHH
Q 005817 535 T--------KVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKD-GIQQAREM 603 (676)
Q Consensus 535 ~--------~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g-~~~~Ar~i 603 (676)
. ..++.....+|..|+.+..+.. +.++.+|++| . . |.. ...++..++.++...+ +.++||+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~-~~~----~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N-EGV----GPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T-SCC----CHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C-CCC----ChHHHHHHHHHHHHHCCChHHHHHH
Confidence 1 1233445679999998764443 5678888887 2 2 211 2233445677777766 59999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCCcccC
Q 005817 604 YKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSFSLLC 674 (676)
Q Consensus 604 y~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~~~~~ 674 (676)
|++++...|.++.+|..|+++|...+ +.++||.+|+++ +++..+|..|++||..+|+.+.+
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~------~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIG------DEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999988888999999999999988 899999999998 34679999999999999998765
No 5
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=5e-28 Score=269.98 Aligned_cols=412 Identities=15% Similarity=0.236 Sum_probs=295.9
Q ss_pred HHHHHhhHHhHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHH
Q 005817 72 SEIVKQRRKFEYRLKRPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAV 151 (676)
Q Consensus 72 ~~i~~~R~~fE~~l~~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral 151 (676)
.++-+.|..||..|...|.+..-|+.|+++|... +....++.+|+||+
T Consensus 26 ~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------------------------------~~~~~a~~~~~ral 73 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--------------------------------KNYDKVEKLFQRCL 73 (530)
T ss_dssp SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------------------------------CCHHHHHHHHHHHH
Confidence 3577899999999999999999999999998643 13578899999999
Q ss_pred HhCCCCHHHHHHHHHHHHHc-c-Cch----HHHHHHHHHHh---CCCCHHHHHHHHHHHHH--------hCCCHHHHHHH
Q 005817 152 MRFKGDIELWFKYMEFCRQR-K-NGR----MKKVLAQVIRF---HPKVPGVWIYAAAWEFD--------HNLNVTAARAL 214 (676)
Q Consensus 152 ~~~p~~~~lW~~y~~~~~~~-~-~~~----~~~~~~ral~~---~P~~~~lW~~~a~~e~~--------~~~~~~~Ar~~ 214 (676)
..+| +.++|..|+.+.... | ... ++++|++++.. +|.++.+|..|+.++.. .+|+++.||.+
T Consensus 74 ~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 74 MKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp TTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred hcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 9999 799999999988654 3 333 45699999886 56788999999999853 15789999999
Q ss_pred HHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCC
Q 005817 215 MQNGLRVCPTS--EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQP 292 (676)
Q Consensus 215 ~~ral~~~p~~--~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (676)
|++++. .|.+ ..+|..|..|+...+. ..++. ++..
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~-~~~~~-~l~~---------------------------------------- 189 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINI-HLAKK-MIED---------------------------------------- 189 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCH-HHHHH-HHHT----------------------------------------
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhch-hHHHH-HHHH----------------------------------------
Confidence 999999 6765 4899999999865422 11111 1100
Q ss_pred cchhhhhhhhhHHHhhhHHHHHHHHH------HHhc----CC-Cc-------hhHHHHHHHHHHHhccc-Cc----HHHH
Q 005817 293 ENMESQKSVDLFREQGLRVLQTIYSG------AVEA----LP-SS-------FNLRQRFFEIVEATNLA-QS----DDMH 349 (676)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~iy~~------Al~~----~p-~~-------~~~~~~~~~~~~~fe~~-~~----~~~a 349 (676)
..+.+..|+.+|+. +++. +| +. ...|..++.+...-... .. ...+
T Consensus 190 ------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 190 ------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp ------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 01245556666655 4442 23 21 35666655433221100 01 1356
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHH-------HHHHHHHHHhh-ccCch-hHHHHHHHHH
Q 005817 350 DKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ-------KAIQVYEEALK-NVPSS-MIFDLYTKFL 420 (676)
Q Consensus 350 ~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~-------~A~~~ye~al~-~~~~~-~lw~~y~~~~ 420 (676)
..++++++..+|.++.+|..++..+...... ....++++ .|+.+|++|++ ..|.. .+|..|+.++
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~------~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhchh------hhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6789999999999999999999987531000 00013333 78888888887 46653 4888888877
Q ss_pred HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817 421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE-DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (676)
Q Consensus 421 ~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~-~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (676)
.. .|.+++|+.+|++++..+|.++ .+|+.|+.++.+.|++++|+.++++|+ +..|.+..+
T Consensus 332 ~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~~~~~~~~~ 392 (530)
T 2ooe_A 332 ES------------------RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHV 392 (530)
T ss_dssp HH------------------TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCTTCCTHH
T ss_pred Hh------------------cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-hccCCchHH
Confidence 65 3567888888888888877775 588888888888888888888888888 666766666
Q ss_pred HHHHHHHHHH-hccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCC
Q 005817 500 WLLRISVEIR-CVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGE 578 (676)
Q Consensus 500 W~~~i~l~~~-~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 578 (676)
|...+.++.. .| +.++++++|++|++..|.. ..+|
T Consensus 393 ~~~~a~~~~~~~~----------~~~~A~~~~e~al~~~p~~--~~~~-------------------------------- 428 (530)
T 2ooe_A 393 YVTAALMEYYCSK----------DKSVAFKIFELGLKKYGDI--PEYV-------------------------------- 428 (530)
T ss_dssp HHHHHHHHHHHTC----------CHHHHHHHHHHHHHHHTTC--HHHH--------------------------------
T ss_pred HHHHHHHHHHHcC----------ChhHHHHHHHHHHHHCCCC--HHHH--------------------------------
Confidence 6555444322 23 4677777777777655421 2233
Q ss_pred CCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 579 SGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG----LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 579 ~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~----~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
..|+.++...|+.++||.+|++++..+|.+ ..+|..++.+|...| +.+.+.+++.++++.+|
T Consensus 429 ------~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G------~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 429 ------LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG------DLASILKVEKRRFTAFR 494 (530)
T ss_dssp ------HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS------CHHHHHHHHHHHHHHTH
T ss_pred ------HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHCc
Confidence 256666777899999999999999876544 349999999999988 89999999999999998
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.97 E-value=1.4e-29 Score=278.04 Aligned_cols=383 Identities=14% Similarity=0.185 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHh---CCCCHHHHHHHHHHHHH---hCCCHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRF---HPKVPGVWIYAAAWEFD---HNLNVTAA 211 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~---~P~~~~lW~~~a~~e~~---~~~~~~~A 211 (676)
..+++.||+||+...| ++++|..|++|+.+.+ ...++.+|++|+.. +|.++.+|..|+.|+.. .+++++.+
T Consensus 30 ~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 30 YRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp HHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 6788999999999999 9999999999999876 35689999999986 68899999999999631 24579999
Q ss_pred HHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCC
Q 005817 212 RALMQNGLRVCPTS--EELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDG 289 (676)
Q Consensus 212 r~~~~ral~~~p~~--~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (676)
|.+|+|||.. |.. ..+|..|..||..... ..+.+. +..
T Consensus 109 R~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~-~~~~~~-~~~------------------------------------- 148 (493)
T 2uy1_A 109 RNGYMRALQT-PMGSLSELWKDFENFELELNK-ITGKKI-VGD------------------------------------- 148 (493)
T ss_dssp HHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCH-HHHHHH-HHH-------------------------------------
T ss_pred HHHHHHHHhC-hhhhHHHHHHHHHHHHHHhcc-ccHHHH-HHH-------------------------------------
Confidence 9999999994 542 6899999999986421 111110 000
Q ss_pred CCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHhcccCc----HHHHHHHHHHHHhcCCCCh
Q 005817 290 SQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPS-SFNLRQRFFEIVEATNLAQS----DDMHDKILSDMQRDFLVDP 364 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~-~~~~~~~~~~~~~~fe~~~~----~~~a~~il~~~~~~~p~~~ 364 (676)
....+..|+.+|+.+....+. +...|..++++......... ...+..+|++++..+|..+
T Consensus 149 ---------------~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 149 ---------------TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ---------------HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 012556788888888765543 45678777665432111111 2356778999999999999
Q ss_pred hhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhh
Q 005817 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (676)
Q Consensus 365 ~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~ 443 (676)
.+|+.+|+.+.. .+++++|+.+|++|+.. |... +|..|+.+.+. ...
T Consensus 214 ~lW~~ya~~~~~-------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~------------------~~~ 261 (493)
T 2uy1_A 214 EVYFFYSEYLIG-------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDE------------------EAV 261 (493)
T ss_dssp HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTC------------------THH
T ss_pred HHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcch------------------hHH
Confidence 999999998865 46688999999999999 8655 88888776320 000
Q ss_pred HHHHHHHH---HH---HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCC
Q 005817 444 ISHLLTVY---EK---AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS 517 (676)
Q Consensus 444 ~~~a~~iy---e~---al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~ 517 (676)
.+++...+ +. .....+....+|+.|+.++.+.++.+.|+.++++|. .. +.+..+|..++.++...+.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~-~~~~~v~i~~A~lE~~~~~----- 334 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NE-GVGPHVFIYCAFIEYYATG----- 334 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TS-CCCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CC-CCChHHHHHHHHHHHHHCC-----
Confidence 11111111 00 000011134678888888888888888888888882 22 2356788888877776543
Q ss_pred CChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817 518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (676)
Q Consensus 518 p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~ 597 (676)
+.++++++|+.|++..|.. ..+|. .|++++...|+.
T Consensus 335 ----d~~~ar~ife~al~~~~~~--~~~~~--------------------------------------~yid~e~~~~~~ 370 (493)
T 2uy1_A 335 ----SRATPYNIFSSGLLKHPDS--TLLKE--------------------------------------EFFLFLLRIGDE 370 (493)
T ss_dssp ----CSHHHHHHHHHHHHHCTTC--HHHHH--------------------------------------HHHHHHHHHTCH
T ss_pred ----ChHHHHHHHHHHHHHCCCC--HHHHH--------------------------------------HHHHHHHHcCCH
Confidence 4678888888887765421 22332 466667778899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC----CCc-hHHHHHHHHHhhcCCc
Q 005817 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD----QNT-SLWRDYYSTETKVSFS 671 (676)
Q Consensus 598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~----~~~-~lW~~y~~fE~~~G~~ 671 (676)
++||.+|+++. .+..+|..+++||...| +.+.+|++|++++.... .++ .+-..|.+||..+|+.
T Consensus 371 ~~aR~l~er~~----k~~~lw~~~~~fE~~~G------~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l 439 (493)
T 2uy1_A 371 ENARALFKRLE----KTSRMWDSMIEYEFMVG------SMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRY 439 (493)
T ss_dssp HHHHHHHHHSC----CBHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhH
Confidence 99999999983 46889999999999999 89999999999997542 122 3335556677777763
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.8e-21 Score=207.46 Aligned_cols=371 Identities=10% Similarity=0.052 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|...|++++...|++...|......+...+ .+.+...+++++..+|.++..|...+.... ..|+++.|...|+++
T Consensus 15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 577889999999999999999999999888777 578899999999999999999999999886 678999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
++..|++...|...+......
T Consensus 94 l~~~p~~~~~~~~l~~~~~~~----------------------------------------------------------- 114 (388)
T 1w3b_A 94 LRLKPDFIDGYINLAAALVAA----------------------------------------------------------- 114 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred HHcCcchHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999888777666543321
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcccc
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~ 378 (676)
++++.|...|+++++..|++...+..+-.++... +..+.+...+++++...|++..+|..++..+..
T Consensus 115 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-- 181 (388)
T 1w3b_A 115 --------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL---GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA-- 181 (388)
T ss_dssp --------SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT--
T ss_pred --------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 2456789999999999999887777665555433 357889999999999999999999999988865
Q ss_pred CCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (676)
Q Consensus 379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~ 457 (676)
.++++.|...|+++++..|... .|......... .+.++.|...|++++..
T Consensus 182 -----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 182 -----------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE------------------ARIFDRAVAAYLRALSL 232 (388)
T ss_dssp -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT------------------TTCTTHHHHHHHHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhh
Confidence 5789999999999999877643 33322222221 36678999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 458 ~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
+|.++..|...+..+...|++++|...+++++ ...|+++..|...+......| +.+++.+.|++++...
T Consensus 233 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDAYCNLANALKEKG----------SVAEAEDCYNTALRLC 301 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHHHHHHHHHS----------CHHHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999 889999999999888887776 3788888888888765
Q ss_pred ChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHH
Q 005817 538 SALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVL 617 (676)
Q Consensus 538 ~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l 617 (676)
|.. ...|. ..+......|++++|...|++++...|.....
T Consensus 302 p~~--~~~~~--------------------------------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 302 PTH--ADSLN--------------------------------------NLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp TTC--HHHHH--------------------------------------HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred ccc--HHHHH--------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 532 11111 12233446789999999999999988888888
Q ss_pred HHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcC
Q 005817 618 YQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVS 669 (676)
Q Consensus 618 ~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G 669 (676)
+...+.+....| +.+.|..+|+++++..|+.+..|......-...|
T Consensus 342 ~~~l~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 342 HSNLASVLQQQG------KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTT------CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC------CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 888888877777 8899999999999999988888888776655554
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.3e-19 Score=202.22 Aligned_cols=434 Identities=11% Similarity=-0.043 Sum_probs=321.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC-------------------HHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------------------PGVWIYAAA 199 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~-------------------~~lW~~~a~ 199 (676)
...+..+|++++. .|.+...|...+..+.+.| .+.+.++|++ ..|.. +..|...+.
T Consensus 133 ~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 133 YARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp HHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHH
Confidence 5678889988864 4788999999999988887 5788889886 45554 789999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccC
Q 005817 200 WEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMP 279 (676)
Q Consensus 200 ~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (676)
... ..|+++.|+.+|+++++..|++...|..++.+..............+.... ..+.++ .. ...++..
T Consensus 209 ~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~---~~------~~~~~~~ 277 (597)
T 2xpi_A 209 VYT-NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYST-YSKEDA---AF------LRSLYML 277 (597)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHH-HHGGGH---HH------HHHHHHT
T ss_pred HHH-HcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcc-cccchH---HH------HHHHHHH
Confidence 886 789999999999999999999999988877643321111110000000000 000000 00 0000000
Q ss_pred CCCCCCCCCCCCCcchhhhhhhhh-HHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 005817 280 LDGEVENTDGSQPENMESQKSVDL-FREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR 358 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~ 358 (676)
+ ... ...++++.|..+|+++++. |.+...|..+...+... +..+.+..++++++.
T Consensus 278 ~--------------------~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 278 K--------------------LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR---SRFIDVLAITTKILE 333 (597)
T ss_dssp T--------------------SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred H--------------------HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHH
Confidence 0 001 1235788999999999887 66677888777766554 357899999999999
Q ss_pred cCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCC
Q 005817 359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELP 437 (676)
Q Consensus 359 ~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~ 437 (676)
..|++..+|..++..+.. .+++++|..+|+++++..|... .|...+.....
T Consensus 334 ~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------- 385 (597)
T 2xpi_A 334 IDPYNLDVYPLHLASLHE-------------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC--------------- 385 (597)
T ss_dssp HCTTCCTTHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH---------------
T ss_pred cCcccHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH---------------
Confidence 999999999999988865 5789999999999998777543 55444443333
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCC
Q 005817 438 SHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS 517 (676)
Q Consensus 438 ~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~ 517 (676)
.|.++.|+.+|++++..+|.+...|...+..+.+.|++++|..++++++ ...|++...|...+......|
T Consensus 386 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g------ 455 (597)
T 2xpi_A 386 ---VNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLFQGTHLPYLFLGMQHMQLG------ 455 (597)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTTTCSHHHHHHHHHHHHHT------
T ss_pred ---hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHcC------
Confidence 4779999999999999999999999999999999999999999999999 889999999999998888776
Q ss_pred CChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCC--cchHHHHHHHHHH
Q 005817 518 PSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESG--FSLPSAIINLVIQ 593 (676)
Q Consensus 518 p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~y~~~~~~ 593 (676)
+.+++.++|++++...|.. ...|...+..+...+ +.+...|++++... |..+..+. .......+....+
T Consensus 456 ----~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 456 ----NILLANEYLQSSYALFQYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp ----CHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHH
Confidence 4899999999999876643 345665554444433 45566677766532 22111111 1223345666788
Q ss_pred hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHH
Q 005817 594 KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYS 663 (676)
Q Consensus 594 ~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~ 663 (676)
.|++++|..+|++++...|.+...|...+.+....| +.+.|..+|+++++..|+++..|.....
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK------IPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC------CHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999999999999999988889999999998888888 8999999999999999988888876543
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=6.7e-19 Score=187.39 Aligned_cols=344 Identities=12% Similarity=0.043 Sum_probs=278.4
Q ss_pred Hcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005817 170 QRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKV 248 (676)
Q Consensus 170 ~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~ 248 (676)
+.| .+.+...|.+++...|+++..+...+.... ..|+++.|...++++++.+|.+...|...+......
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~--------- 80 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------- 80 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC---------
Confidence 445 578899999999999999999999999886 688999999999999999999988888777654331
Q ss_pred HhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh
Q 005817 249 ALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN 328 (676)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~ 328 (676)
++++.|...|+++++..|++..
T Consensus 81 ----------------------------------------------------------g~~~~A~~~~~~al~~~p~~~~ 102 (388)
T 1w3b_A 81 ----------------------------------------------------------GQLQEAIEHYRHALRLKPDFID 102 (388)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHHHHCTTCHH
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHcCcchHH
Confidence 2567889999999999999877
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817 329 LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (676)
Q Consensus 329 ~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~ 408 (676)
.+..+...+... +..+.+...+++++...|++..+|..++..+.. .+++++|...|+++++..|
T Consensus 103 ~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 103 GYINLAAALVAA---GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-------------LGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHHHHHHH---SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCC
Confidence 777666655443 345788899999999999999999999988765 4788999999999998877
Q ss_pred chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817 409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (676)
Q Consensus 409 ~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~ 487 (676)
... .|......... .|.++.|...|++++..+|.+...|...+..+...|++++|...+++
T Consensus 167 ~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNA------------------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp TCHHHHHHHHHHHHT------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 643 44333322221 36788999999999999999999999999999999999999999999
Q ss_pred HhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005817 488 LCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIA 567 (676)
Q Consensus 488 al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a 567 (676)
++ ...|++...|...+......| +.+++.+.|++++...|.. ...|
T Consensus 229 al-~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~--~~~~--------------------- 274 (388)
T 1w3b_A 229 AL-SLSPNHAVVHGNLACVYYEQG----------LIDLAIDTYRRAIELQPHF--PDAY--------------------- 274 (388)
T ss_dssp HH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSC--HHHH---------------------
T ss_pred HH-hhCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCC--HHHH---------------------
Confidence 99 788999889988888777766 3677777787777654422 1111
Q ss_pred HHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHH
Q 005817 568 LISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESA 647 (676)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~a 647 (676)
...+..+...|++++|...|++++...|.+...+...+.+....+ +.+.|..+|+++
T Consensus 275 -----------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~a 331 (388)
T 1w3b_A 275 -----------------CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG------NIEEAVRLYRKA 331 (388)
T ss_dssp -----------------HHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence 123334557899999999999999999999999988888887877 899999999999
Q ss_pred HhhCCCCchHHHHHHHHHhhcCCcc
Q 005817 648 LATYDQNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 648 l~~~~~~~~lW~~y~~fE~~~G~~~ 672 (676)
++..|++...|...+..-...|+.+
T Consensus 332 l~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 332 LEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 9999988899999888888888765
No 10
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.3e-20 Score=194.50 Aligned_cols=243 Identities=12% Similarity=0.189 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHHHHcc----C-----chHHHHHHHHHHhCCCCHHHHHHHHHHHHH------hCCCH-------HHH
Q 005817 154 FKGDIELWFKYMEFCRQRK----N-----GRMKKVLAQVIRFHPKVPGVWIYAAAWEFD------HNLNV-------TAA 211 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~----~-----~~~~~~~~ral~~~P~~~~lW~~~a~~e~~------~~~~~-------~~A 211 (676)
.|.+..+|..|++|+++.. . .++..+|++++..+|.++.+|+.++.++.. ..|++ +.|
T Consensus 4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 4557899999999998752 1 357789999999999999999999999853 24776 899
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817 212 RALMQNGLR-VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (676)
Q Consensus 212 r~~~~ral~-~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (676)
+.+|++|++ ..|++..+|..|+.++...
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~--------------------------------------------------- 112 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESR--------------------------------------------------- 112 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHT---------------------------------------------------
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhc---------------------------------------------------
Confidence 999999999 6999999999999987642
Q ss_pred CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFN-LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~-~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~ 369 (676)
++++.|+.+|++|++..|.+.. .|..+..++.+.+ ..+.+..+++++++..|.+..+|..
T Consensus 113 ----------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 113 ----------------MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp ----------------TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH---CHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2457899999999999998876 7887776665432 4678999999999999999999988
Q ss_pred HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL 448 (676)
Q Consensus 370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~ 448 (676)
.+..+... .++++.|+.+|++|++..|... +|..|+.++.. .|++++|+
T Consensus 174 ~a~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------------------~g~~~~A~ 223 (308)
T 2ond_A 174 AALMEYYC------------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH------------------LNEDNNTR 223 (308)
T ss_dssp HHHHHHHT------------SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------TCCHHHHH
T ss_pred HHHHHHHH------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------CCCHHHHH
Confidence 77775421 3678999999999999988654 99999888765 36789999
Q ss_pred HHHHHHHHc---CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 449 TVYEKAEAM---GC-LTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 449 ~iye~al~~---~p-~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
.+|++|+.. +| ....+|..|+.++.+.|+.+.|..++++++ +.+|++.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~-~~~p~~~ 275 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF-TAFREEY 275 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHTTTTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHccccc
Confidence 999999996 44 368899999999999999999999999999 8899754
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.87 E-value=6e-19 Score=198.79 Aligned_cols=310 Identities=11% Similarity=0.009 Sum_probs=237.4
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHH-------------------------------H----HhcccCcHHHHHH
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIV-------------------------------E----ATNLAQSDDMHDK 351 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~-------------------------------~----~fe~~~~~~~a~~ 351 (676)
++++.|..+|+++++..|++...+..+..++ . .+...+..+.+..
T Consensus 214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 4677888888888888777666554432211 0 0001123456777
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE 430 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d 430 (676)
++++++.. |.+..+|..++..+.. .+++++|..+|+++++..|... .|...+.....
T Consensus 294 ~~~~~~~~-~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 351 (597)
T 2xpi_A 294 YLSSINGL-EKSSDLLLCKADTLFV-------------RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE-------- 351 (597)
T ss_dssp HHHTSTTG-GGCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH--------
T ss_pred HHHHhhcC-CchHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--------
Confidence 88887776 7888999999998876 5789999999999998777543 66655555443
Q ss_pred ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817 431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (676)
Q Consensus 431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (676)
.|..+.|..+|++++..+|.++..|...+.++.+.|++++|+.++++++ ...|.+...|...+....+.
T Consensus 352 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 352 ----------SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS-TMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp ----------HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred ----------hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999999999999999999999999 78999999999999998887
Q ss_pred ccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHH
Q 005817 511 VTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAII 588 (676)
Q Consensus 511 ~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~ 588 (676)
| +.+++.++|++++...|.. ...|...+..+...+ +.+...|++++. ..|.. +......+
T Consensus 421 g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-----~~~~~~l~ 482 (597)
T 2xpi_A 421 G----------EHDQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYD-----PLLLNELG 482 (597)
T ss_dssp T----------CHHHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCCC-----HHHHHHHH
T ss_pred C----------CHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----hHHHHHHH
Confidence 6 4899999999999876643 234554444343333 455666776664 33332 23333566
Q ss_pred HHHHHhcCHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHH
Q 005817 589 NLVIQKDGIQQAREMYKRFLAL------PRPG-LVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDY 661 (676)
Q Consensus 589 ~~~~~~g~~~~Ar~iy~~al~~------~p~~-~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y 661 (676)
..+.+.|++++|..+|++++.. .|.. ...|...+.+....| +++.|..+|+++++..|+++.+|...
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK------MYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 7788899999999999999875 3443 568888888887888 89999999999999999999999999
Q ss_pred HHHHhhcCCccc
Q 005817 662 YSTETKVSFSLL 673 (676)
Q Consensus 662 ~~fE~~~G~~~~ 673 (676)
+..-...|+.+.
T Consensus 557 ~~~~~~~g~~~~ 568 (597)
T 2xpi_A 557 ALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHhCCHHH
Confidence 999988888654
No 12
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=8.7e-20 Score=188.35 Aligned_cols=246 Identities=12% Similarity=0.157 Sum_probs=200.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccc-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 91 LKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDF-SGVARILEIYRLAVMRFKGDIELWFKYMEFCR 169 (676)
Q Consensus 91 ~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~ 169 (676)
+...|.+||+||.+. +....+. ...++|..+|++|+..+|.+.++|..|+.++.
T Consensus 7 ~~~~W~~yi~~E~~~-------------------------~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~ 61 (308)
T 2ond_A 7 QVDMWKKYIQWEKSN-------------------------PLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 61 (308)
T ss_dssp HHHHHHHHHHHHHTC-------------------------TTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------------------------cccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467899999999541 0011111 23478999999999999999999999999986
Q ss_pred H-------cc-C-------chHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Q 005817 170 Q-------RK-N-------GRMKKVLAQVIR-FHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE-LWVEY 232 (676)
Q Consensus 170 ~-------~~-~-------~~~~~~~~ral~-~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~-lW~~y 232 (676)
. .| . +.++.+|++|+. ..|+++.+|..++.++. ..|+++.|+.+|+++++..|.+.. +|..|
T Consensus 62 ~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 140 (308)
T 2ond_A 62 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQY 140 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHH
T ss_pred HhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHH
Confidence 4 24 3 689999999999 79999999999999985 788999999999999999999876 99999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (676)
Q Consensus 233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (676)
+.++... ++++.|
T Consensus 141 ~~~~~~~-------------------------------------------------------------------~~~~~A 153 (308)
T 2ond_A 141 MKFARRA-------------------------------------------------------------------EGIKSG 153 (308)
T ss_dssp HHHHHHH-------------------------------------------------------------------HCHHHH
T ss_pred HHHHHHh-------------------------------------------------------------------cCHHHH
Confidence 9887543 245778
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817 313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (676)
Q Consensus 313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~ 392 (676)
+.+|++|++..|.+..+|.....+. +...+..+.+..+++++++.+|+++.+|..++..+.. .++
T Consensus 154 ~~~~~~a~~~~p~~~~~~~~~a~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------------~g~ 218 (308)
T 2ond_A 154 RMIFKKAREDARTRHHVYVTAALME--YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-------------LNE 218 (308)
T ss_dssp HHHHHHHHTSTTCCTHHHHHHHHHH--HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------------TCC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------CCC
Confidence 9999999999888877776543221 1112467889999999999999999999999998865 478
Q ss_pred HHHHHHHHHHHhhcc--Cc---hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH
Q 005817 393 MQKAIQVYEEALKNV--PS---SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE 462 (676)
Q Consensus 393 ~~~A~~~ye~al~~~--~~---~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~ 462 (676)
+++|+.+|++++... +. ..+|..|+.++.. .|+.+.+..++++++...|.++
T Consensus 219 ~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~------------------~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN------------------IGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH------------------HSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHccccc
Confidence 999999999999962 32 2399999999876 3678999999999999988754
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=2e-17 Score=179.32 Aligned_cols=360 Identities=8% Similarity=-0.050 Sum_probs=264.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (676)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~ 221 (676)
....+.+++...|.+...|...+..+...| +..+..+|++++..+|.++..|...+.... ..|+++.|...|+++++.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhc
Confidence 346777888899999999999999988887 578999999999999999999999999886 688999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhh
Q 005817 222 CPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV 301 (676)
Q Consensus 222 ~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (676)
.|++..+|..++......
T Consensus 90 ~p~~~~~~~~l~~~~~~~-------------------------------------------------------------- 107 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQ-------------------------------------------------------------- 107 (450)
T ss_dssp CTTCHHHHHHHHHHHHHT--------------------------------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHc--------------------------------------------------------------
Confidence 999888877766554321
Q ss_pred hhHHHhhhHHHHHHHHHHHhcCCCch---hHHHHHHHH---------HHHhcccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817 302 DLFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEI---------VEATNLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (676)
Q Consensus 302 ~~~~~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~---------~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~ 369 (676)
++++.|..+|+++++..|++. ..+..+... ...+...+..+.+...+++++...|+++.+|..
T Consensus 108 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 108 -----GKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp -----TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 256778999999999888876 666554332 111112245778999999999999999999999
Q ss_pred HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL 448 (676)
Q Consensus 370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~ 448 (676)
++..+.. .+++++|...|+++++..|... .|......... .|+++.|.
T Consensus 183 l~~~~~~-------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~ 231 (450)
T 2y4t_A 183 RAECFIK-------------EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ------------------LGDHELSL 231 (450)
T ss_dssp HHHHHHH-------------TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH------------------TTCHHHHH
T ss_pred HHHHHHH-------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHH
Confidence 9998876 5778999999999998877543 55444433332 36789999
Q ss_pred HHHHHHHHcCCCcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhhccCCChHH----HHHHHHHHHHHhcc
Q 005817 449 TVYEKAEAMGCLTEDIAHRY------------VTLYLQLGKLDEARKLAAKLCSGKLSDSVQ----LWLLRISVEIRCVT 512 (676)
Q Consensus 449 ~iye~al~~~p~~~~lw~~~------------~~l~~~~~~~~~A~~l~~~al~~~~P~~~~----lW~~~i~l~~~~~~ 512 (676)
..|++++..+|.++..|..+ +..+...|++++|..++++++ ...|.++. +|...+.+..+.|
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~l~~~~~~~g- 309 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM-KTEPSIAEYTVRSKERICHCFSKDE- 309 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCSSHHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHCC-
Confidence 99999999999998888777 888889999999999999999 78888754 5555566665554
Q ss_pred ccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHH
Q 005817 513 RNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVI 592 (676)
Q Consensus 513 ~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~ 592 (676)
+.+++.+.|++++...|.. ..+|. ..+....
T Consensus 310 ---------~~~~A~~~~~~a~~~~p~~--~~~~~--------------------------------------~l~~~~~ 340 (450)
T 2y4t_A 310 ---------KPVEAIRVCSEVLQMEPDN--VNALK--------------------------------------DRAEAYL 340 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHCTTC--HHHHH--------------------------------------HHHHHHH
T ss_pred ---------CHHHHHHHHHHHHHhCccc--HHHHH--------------------------------------HHHHHHH
Confidence 3677777777776654422 11111 2233355
Q ss_pred HhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh------------ccCCCCccchHHHHHHHHH-HHhhCCC
Q 005817 593 QKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN------------LASVGDKDSLVNARKLFES-ALATYDQ 653 (676)
Q Consensus 593 ~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~------------~~~~~~~~~~~~aR~lye~-al~~~~~ 653 (676)
..|++++|...|++++...|.+...+.....+... +|.. ...+.+.+++.|.+ ++...|+
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~-~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVK-RNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSS-TTCCTTHHHHHHHHHHHHSCGG
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCC-ccCCHHHHHHHHHHHHHHhCCC
Confidence 68899999999999999988888777666543221 1111 12256889999997 8888773
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=4.5e-17 Score=180.67 Aligned_cols=408 Identities=9% Similarity=0.020 Sum_probs=262.4
Q ss_pred HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e 236 (676)
...|...+..+.+.| +..+...|++++..+|+++.+|...+.... ..|+++.|...|++++...|++..+|...+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 345555555555555 567777777777777777777777777765 466777777777777777777777777777665
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHH
Q 005817 237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY 316 (676)
Q Consensus 237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy 316 (676)
...+....+...+ . ... .+|.. ...++ ...+..+....|..+|
T Consensus 104 ~~~g~~~~A~~~~-~-~~~---~~~~~----------~~~~~----------------------~~~~~~~~~~~a~~~~ 146 (537)
T 3fp2_A 104 ESLGNFTDAMFDL-S-VLS---LNGDF----------DGASI----------------------EPMLERNLNKQAMKVL 146 (537)
T ss_dssp HHHTCHHHHHHHH-H-HHC----------------------------------------------CHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHH-H-HHh---cCCCC----------ChHHH----------------------HHHHHHHHHHHHHHHH
Confidence 5443332222211 1 000 00000 00000 0001112335567777
Q ss_pred HHHHhcCCCc--------hh-----------------------------HHHHHHHHHH----Hhcc-cCcHHHHHHHHH
Q 005817 317 SGAVEALPSS--------FN-----------------------------LRQRFFEIVE----ATNL-AQSDDMHDKILS 354 (676)
Q Consensus 317 ~~Al~~~p~~--------~~-----------------------------~~~~~~~~~~----~fe~-~~~~~~a~~il~ 354 (676)
+.++...|.. .. +...+..++. .+.. .+....+..+++
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 147 NENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 7776543211 11 2211111110 0000 013567888999
Q ss_pred HHHhcCCCChhhHHHHH-------HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCc
Q 005817 355 DMQRDFLVDPKYWDWLA-------RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPK 427 (676)
Q Consensus 355 ~~~~~~p~~~~~w~~la-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~ 427 (676)
+++...|+++.+|..++ ..+.. .++++.|...|+++++..|....|..... - +.
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~l~~---~-~~-- 287 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFL-------------KNNLLDAQVLLQESINLHPTPNSYIFLAL---T-LA-- 287 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCCHHHHHHHHH---H-TC--
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHh-------------cccHHHHHHHHHHHHhcCCCchHHHHHHH---H-HH--
Confidence 99999999987655444 44332 46789999999999998887333322211 1 11
Q ss_pred cccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 428 KEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 428 ~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
..|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...+.+.
T Consensus 288 ------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 288 ------------DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ-SLNPENVYPYIQLACLL 354 (537)
T ss_dssp ------------CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCSHHHHHHHHHH
T ss_pred ------------HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence 13668999999999999999999999999999999999999999999999 88999999999999888
Q ss_pred HHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchH-
Q 005817 508 IRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLP- 584 (676)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~- 584 (676)
...| +.+++.+.|++++...|.. ..+|..+...+...+ +.+...+++++... |..... ...+.
T Consensus 355 ~~~g----------~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~-~~~~~~ 420 (537)
T 3fp2_A 355 YKQG----------KFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLE-EVQEKI-HVGIGP 420 (537)
T ss_dssp HHTT----------CHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHCSSC-SSTTHH
T ss_pred HHcC----------CHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-Ccchhh-HHHHHH
Confidence 8776 4899999999999887654 234554444443333 44556667666533 333210 11111
Q ss_pred -HHHHHHHHHh----------cCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC
Q 005817 585 -SAIINLVIQK----------DGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ 653 (676)
Q Consensus 585 -~~y~~~~~~~----------g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~ 653 (676)
...+...... |++++|...|++++...|.+...+...+.+....| +.+.|..+|+++++..|+
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g------~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME------KIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHhCCC
Confidence 1223445556 99999999999999999999999988888888888 899999999999999986
Q ss_pred Cc
Q 005817 654 NT 655 (676)
Q Consensus 654 ~~ 655 (676)
.+
T Consensus 495 ~~ 496 (537)
T 3fp2_A 495 MD 496 (537)
T ss_dssp CH
T ss_pred cH
Confidence 54
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-17 Score=183.45 Aligned_cols=432 Identities=10% Similarity=-0.010 Sum_probs=289.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
+....|...|++++...| +...|...+..+...| ...+...|++++..+|+++..|...+.... ..|+++.|...|+
T Consensus 20 g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLS 97 (514)
T ss_dssp SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence 346788999999999999 6889999998888877 578999999999999999999999999886 6889999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc--
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN-- 294 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 294 (676)
+++...|.+.......+........ .. . ........+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~-----------~-----~~~~l~~~~~~~ 137 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQA------------------------MS-----------K-----LKEKFGDIDTAT 137 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHH------------------------HH-----------H-----HTTC--------
T ss_pred HHHhcCCCccchHHHHHHHHHHHHH------------------------HH-----------H-----HHHHHHHHHHHH
Confidence 9999999765544433322211100 00 0 0000000000
Q ss_pred ---hhh--hhhhhhHH-Hhhh--HHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh
Q 005817 295 ---MES--QKSVDLFR-EQGL--RVLQTIYSGAVEAL--------PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR 358 (676)
Q Consensus 295 ---~~~--~~~~~~~~-~~~~--~~a~~iy~~Al~~~--------p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~ 358 (676)
... ........ .... ......+-...... |++...+......+..+...+..+.+...+++++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 217 (514)
T 2gw1_A 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217 (514)
T ss_dssp -------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Confidence 000 00000000 0000 00000000000000 22233332221111111113457788888888888
Q ss_pred -----c--CCC-------ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHh
Q 005817 359 -----D--FLV-------DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMI 424 (676)
Q Consensus 359 -----~--~p~-------~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~ 424 (676)
. .|+ +..+|..+|..+.. .++++.|...|+++++..|....|.........
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~-- 282 (514)
T 2gw1_A 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL-------------KNDPLGAHEDIKKAIELFPRVNSYIYMALIMAD-- 282 (514)
T ss_dssp HHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH-------------SSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHT--
T ss_pred HhhhhhccCccccccChHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHH--
Confidence 4 444 45678888888765 478999999999999988872233322222221
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
.|+++.|...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+...|...+
T Consensus 283 ----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~ 345 (514)
T 2gw1_A 283 ----------------RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-ELDPENIFPYIQLA 345 (514)
T ss_dssp ----------------SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH-HTCSSCSHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhChhhHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999 88999999999888
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCC-c
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESG-F 581 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~-~ 581 (676)
.+....| +.+++.+.|++++...|.. ...|......+...+ +.+...+++++. ..|..+.... .
T Consensus 346 ~~~~~~~----------~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~ 412 (514)
T 2gw1_A 346 CLAYREN----------KFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIE-LENKLDGIYVGI 412 (514)
T ss_dssp HHTTTTT----------CHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTSSSCSSCS
T ss_pred HHHHHcC----------CHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccchHHHHH
Confidence 8776655 4899999999999876643 234444333333332 445566666665 3344321000 1
Q ss_pred chHHHHHHHHHH---hcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHH
Q 005817 582 SLPSAIINLVIQ---KDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLW 658 (676)
Q Consensus 582 ~~~~~y~~~~~~---~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW 658 (676)
......+..... .|++++|...|++++...|.+...+...+.+....| +.+.|...|+++++..|+++..|
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE------DIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHhccccHHHH
Confidence 133345666777 899999999999999998999888888888888888 89999999999999999887777
Q ss_pred HHHH
Q 005817 659 RDYY 662 (676)
Q Consensus 659 ~~y~ 662 (676)
....
T Consensus 487 ~~~~ 490 (514)
T 2gw1_A 487 QAIT 490 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.1e-16 Score=167.12 Aligned_cols=336 Identities=10% Similarity=0.014 Sum_probs=250.0
Q ss_pred CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~ 235 (676)
+++.|...+......| +..+...|++++...|.++.+|...+.... ..|+++.|...|++++...|++..+|...+.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4677888888887777 578999999999999999999999999886 67899999999999999999988887766655
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHH
Q 005817 236 ELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTI 315 (676)
Q Consensus 236 e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i 315 (676)
.... ++++.|...
T Consensus 81 ~~~~-------------------------------------------------------------------~~~~~A~~~ 93 (359)
T 3ieg_A 81 LLKQ-------------------------------------------------------------------GKLDEAEDD 93 (359)
T ss_dssp HHHH-------------------------------------------------------------------TCHHHHHHH
T ss_pred HHHc-------------------------------------------------------------------CChHHHHHH
Confidence 4321 256788999
Q ss_pred HHHHHhcCC---CchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817 316 YSGAVEALP---SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (676)
Q Consensus 316 y~~Al~~~p---~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~ 392 (676)
|+++++..| ++...+..+..+.. ...+...|..+.. .++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~-------------~~~ 135 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADE-------------------------MQRLRSQALDAFD-------------GAD 135 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------TTC
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH-------------ccC
Confidence 999999988 66555543321110 0113344555543 477
Q ss_pred HHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005817 393 MQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL 471 (676)
Q Consensus 393 ~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l 471 (676)
+++|...|+++++..|... .|......... .|+++.|...|++++..+|.++..|...+..
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIK------------------EGEPRKAISDLKAASKLKSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8999999999999887644 44433333332 3678999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH------------HHHhccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817 472 YLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV------------EIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 472 ~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l------------~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
+...|++++|...+++++ ...|++...|..+..+ ....+ +.+++.+.|++++...|.
T Consensus 198 ~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG----------RYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCCS
T ss_pred HHHcCCHHHHHHHHHHHH-hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 8899988877655322 22222 345555555555554443
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHH
Q 005817 540 LESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQ 619 (676)
Q Consensus 540 ~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~ 619 (676)
.. .+|.. .....+......|++++|...|++++...|.+...+.
T Consensus 267 ~~--~~~~~----------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 267 VA--EYTVR----------------------------------SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp SH--HHHHH----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ch--HHHHH----------------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 21 11100 0012334456788999999999999988888888888
Q ss_pred HHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcC
Q 005817 620 NCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVS 669 (676)
Q Consensus 620 ~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G 669 (676)
..+.+....+ +.+.|...|+++++..|+++.+|..........+
T Consensus 311 ~~~~~~~~~g------~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 311 DRAEAYLIEE------MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 8888877777 8899999999999999988888888777665543
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=1.3e-16 Score=176.91 Aligned_cols=417 Identities=12% Similarity=0.024 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|...|++++...|++...|...+..+...| +..+...|++++..+|+++..|...+.... ..|+++.|...|+ +
T Consensus 41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~-~ 118 (537)
T 3fp2_A 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE-SLGNFTDAMFDLS-V 118 (537)
T ss_dssp CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HcCCHHHHHHHHH-H
Confidence 456889999999999999999999999988887 588999999999999999999999999986 6789999999995 9
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccccc---------hhHHhhhhhccccccCCCCCCCCCC
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV-RDHRD---------ADEKRWINENKGLFMPLDGEVENTD 288 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (676)
+...|+....|....--.......+..-...++....... ..+.. ....... ..+.... ..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~ 190 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV-------SSVNTSS-NYD 190 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH-------HTSCCCC-SSC
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH-------HHHhhcc-ccc
Confidence 9999986655533211111111111111111111000000 00000 0000000 0000000 000
Q ss_pred CCCCcchhhhhhh--------hhH--HHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH----hcccCcHHHHHHHHH
Q 005817 289 GSQPENMESQKSV--------DLF--REQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEA----TNLAQSDDMHDKILS 354 (676)
Q Consensus 289 ~~~~~~~~~~~~~--------~~~--~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~----fe~~~~~~~a~~il~ 354 (676)
. ....+.... ..+ ..+.++.|..+|+++++..|++...+..+...+.. +...+..+.+...++
T Consensus 191 ~---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 191 T---AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp S---SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0 000000000 000 01367899999999999999987665544333222 112246788999999
Q ss_pred HHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccC
Q 005817 355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD 433 (676)
Q Consensus 355 ~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~ 433 (676)
+++...|+ +.+|..++..+.. .++++.|...|+++++..|... .|.........
T Consensus 268 ~~~~~~~~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 322 (537)
T 3fp2_A 268 ESINLHPT-PNSYIFLALTLAD-------------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI----------- 322 (537)
T ss_dssp HHHHHCCC-HHHHHHHHHHTCC-------------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------
T ss_pred HHHhcCCC-chHHHHHHHHHHH-------------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-----------
Confidence 99999999 8899999998865 4778999999999999887643 55444433332
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccc
Q 005817 434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR 513 (676)
Q Consensus 434 ~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~ 513 (676)
.|+++.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|.+..+|..++.+....|
T Consensus 323 -------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g-- 392 (537)
T 3fp2_A 323 -------LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK-LKFPTLPEVPTFFAEILTDRG-- 392 (537)
T ss_dssp -------TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT--
T ss_pred -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHhC--
Confidence 3678999999999999999999999999999999999999999999999 889999999999998888776
Q ss_pred cCCCCChhchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHh------------hhHHHHHHHHHHHHhhhhCCCC
Q 005817 514 NSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMN------------QKHYFDKLVEIALISVAKDGGG 577 (676)
Q Consensus 514 ~~~~p~~~~~~~~~~~f~~Al~~~~~~~----~~~lW~~~l~~~~~------------~~~~~~~~~~~a~~~~~~~~~~ 577 (676)
+.+++.+.|++++...|... ....+......+.. ..+.+...+++++. ..|..
T Consensus 393 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~-- 461 (537)
T 3fp2_A 393 --------DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-LDPRS-- 461 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-HCTTC--
T ss_pred --------CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-hCCCC--
Confidence 47999999999998654321 11111111111211 11334455666554 33433
Q ss_pred CCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHH
Q 005817 578 ESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLY 618 (676)
Q Consensus 578 ~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~ 618 (676)
.......+......|++++|...|++++...|......
T Consensus 462 ---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 462 ---EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 23333556678889999999999999999887776543
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.81 E-value=1.9e-16 Score=171.56 Aligned_cols=310 Identities=11% Similarity=0.030 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|..+|++++...|.+...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|..+|+++
T Consensus 42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 578899999999999999999999999988887 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcch
Q 005817 219 LRVCPTSE---ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENM 295 (676)
Q Consensus 219 l~~~p~~~---~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (676)
+...|.+. ..|..++...........+
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-------------------------------------------------- 150 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQA-------------------------------------------------- 150 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred HhcCCCChhhHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 99999988 8888877664332111000
Q ss_pred hhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhc
Q 005817 296 ESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM 375 (676)
Q Consensus 296 ~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~ 375 (676)
...+..++++.|..+|+++++..|.+...+..+..++...+ ..+.+...+++++...|+++.+|..++..+.
T Consensus 151 -----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 151 -----LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG---EPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp -----HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred -----HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 01112357789999999999999998888877777665543 5678999999999999999999999999887
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH--HHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM--DMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye 452 (676)
. .+++++|...|+++++..|... .|..+..... ..... . . .....|.++.|...|+
T Consensus 223 ~-------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~-~------~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 223 Q-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES-A-E------ELIRDGRYTDATSKYE 281 (450)
T ss_dssp H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH-H-H------HHHHHTCHHHHHHHHH
T ss_pred H-------------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH-H-H------HHHHcCCHHHHHHHHH
Confidence 6 5789999999999998888654 4443311100 00000 0 0 0012477999999999
Q ss_pred HHHHcCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHH
Q 005817 453 KAEAMGCLTED----IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFE 528 (676)
Q Consensus 453 ~al~~~p~~~~----lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~ 528 (676)
+++...|.++. .|...+.++.+.|++++|...+++++ ...|++...|..++......+ +.+++.+
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~~~----------~~~~A~~ 350 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL-QMEPDNVNALKDRAEAYLIEE----------MYDEAIQ 350 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHhc----------CHHHHHH
Confidence 99999998854 67888999999999999999999999 889999999999999888776 4899999
Q ss_pred HHHHHHhhcChh
Q 005817 529 LLKCILTKVSAL 540 (676)
Q Consensus 529 ~f~~Al~~~~~~ 540 (676)
.|++++...|..
T Consensus 351 ~~~~al~~~p~~ 362 (450)
T 2y4t_A 351 DYETAQEHNEND 362 (450)
T ss_dssp HHHHHHTTSSSC
T ss_pred HHHHHHHhCcch
Confidence 999999976654
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-16 Score=175.51 Aligned_cols=404 Identities=8% Similarity=-0.023 Sum_probs=253.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH-
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM- 215 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~- 215 (676)
+....|...|++++...|++...|...+..+...| ...+...|++++...|.+.......+..... ......+...+
T Consensus 53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 131 (514)
T 2gw1_A 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN-KQAMSKLKEKFG 131 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHH-HHHHHHHTTC--
T ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34577899999999999999999999999998887 5789999999999999776554444433321 11122222211
Q ss_pred --HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 216 --QNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 216 --~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
+++... |.+.......... ... +..|......... ..+.............
T Consensus 132 ~~~~~~~~-~~~~~~~~~~~~~---------------~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 184 (514)
T 2gw1_A 132 DIDTATAT-PTELSTQPAKERK---------------DKQ----ENLPSVTSMASFF-------GIFKPELTFANYDESN 184 (514)
T ss_dssp ---------------------------------------------CCCCHHHHHHHH-------TTSCCCCCCSSCCSSC
T ss_pred HHHHHHHh-hhhccCChhhHHH---------------hhc----cCCchhHHHHHHH-------hhcCHHHHHHHhcCCc
Confidence 111111 1111000000000 000 0000000000000 0000000000000000
Q ss_pred -chhh-hhhhhhHH---HhhhHHHHHHHHHHHh-----c--CCCc-------hhHHHHHHHHHHHhcccCcHHHHHHHHH
Q 005817 294 -NMES-QKSVDLFR---EQGLRVLQTIYSGAVE-----A--LPSS-------FNLRQRFFEIVEATNLAQSDDMHDKILS 354 (676)
Q Consensus 294 -~~~~-~~~~~~~~---~~~~~~a~~iy~~Al~-----~--~p~~-------~~~~~~~~~~~~~fe~~~~~~~a~~il~ 354 (676)
...+ ......+. .++++.|..+|+++++ . .|++ ...+..+...+.. .+..+.+...++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~ 261 (514)
T 2gw1_A 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL---KNDPLGAHEDIK 261 (514)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH---SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH---CCCHHHHHHHHH
Confidence 0001 11111111 4678999999999998 4 3433 3333333333322 246789999999
Q ss_pred HHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccC
Q 005817 355 DMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRD 433 (676)
Q Consensus 355 ~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~ 433 (676)
+++...|+ ..+|..++..+.. .++++.|...|+++++..|... .|.........
T Consensus 262 ~~l~~~~~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 316 (514)
T 2gw1_A 262 KAIELFPR-VNSYIYMALIMAD-------------RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI----------- 316 (514)
T ss_dssp HHHHHCCC-HHHHHHHHHHHHT-------------SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-----------
T ss_pred HHHhhCcc-HHHHHHHHHHHHH-------------CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-----------
Confidence 99999999 8899999998865 4667889999999999877544 44443333332
Q ss_pred CCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccc
Q 005817 434 SELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTR 513 (676)
Q Consensus 434 ~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~ 513 (676)
.|+++.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|.+...|...+.+....|
T Consensus 317 -------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~-- 386 (514)
T 2gw1_A 317 -------LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK-RKFPEAPEVPNFFAEILTDKN-- 386 (514)
T ss_dssp -------TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHTT--
T ss_pred -------hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHCC--
Confidence 3668899999999999999999999999999999999999999999999 889999999999998888776
Q ss_pred cCCCCChhchHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHHh---hh--HHHHHHHHHHHHhhhhCCCCCCCcchH
Q 005817 514 NSFSPSKADILSIFELLKCILTKVSALES----ESLWLMALKFFMN---QK--HYFDKLVEIALISVAKDGGGESGFSLP 584 (676)
Q Consensus 514 ~~~~p~~~~~~~~~~~f~~Al~~~~~~~~----~~lW~~~l~~~~~---~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~ 584 (676)
+.+++.+.|++++...|.... ...|......+.. .+ +.+...+++++. ..|.. ....
T Consensus 387 --------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----~~~~ 452 (514)
T 2gw1_A 387 --------DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK-LDPRS-----EQAK 452 (514)
T ss_dssp --------CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCTTC-----HHHH
T ss_pred --------CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-hCccc-----HHHH
Confidence 479999999999986543311 1134443333433 33 344555666654 33332 2333
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005817 585 SAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC 621 (676)
Q Consensus 585 ~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~ 621 (676)
...+......|++++|...|++++...|.+...+...
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3456678889999999999999999988877766544
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.3e-16 Score=162.50 Aligned_cols=311 Identities=12% Similarity=0.023 Sum_probs=249.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....|...|++++...|.+...|...+..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|++
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 96 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKK 96 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHH
Confidence 3678899999999999999999999999988877 578999999999999999999999999886 67899999999999
Q ss_pred HHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817 218 GLRVCP---TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (676)
Q Consensus 218 al~~~p---~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (676)
++...| ++..+|..+..+.........+.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------------------------------ 128 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKADEMQRLRSQAL------------------------------------------------ 128 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred HHhcCCcccChHHHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 999999 88888887776543221111000
Q ss_pred hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~ 374 (676)
..+..++++.|..+|+++++..|.+...+..+..++... +..+.+...+++++...|+++.+|..+|..+
T Consensus 129 -------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 129 -------DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE---GEPRKAISDLKAASKLKSDNTEAFYKISTLY 198 (359)
T ss_dssp -------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred -------HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 011124678999999999999999888877766665543 3578899999999999999999999999998
Q ss_pred ccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH--HhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD--MIAPKKEETRDSELPSHVEHYISHLLTVY 451 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~a~~iy 451 (676)
.. .++++.|...|+++++..|... .|..|.....- .... . . .....|+++.|...|
T Consensus 199 ~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-a-~------~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 199 YQ-------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES-A-E------ELIRDGRYTDATSKY 257 (359)
T ss_dssp HH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH-H-H------HHHHTTCHHHHHHHH
T ss_pred HH-------------cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH-H-H------HHHHcCCHHHHHHHH
Confidence 76 5789999999999999888654 45444322100 0000 0 0 001247799999999
Q ss_pred HHHHHcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHH
Q 005817 452 EKAEAMGCLTEDI----AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIF 527 (676)
Q Consensus 452 e~al~~~p~~~~l----w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~ 527 (676)
++++...|.++.. +...+..+...|++++|...+++++ ...|+++..|..++.+....| +.+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g----------~~~~A~ 326 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL-QMEPDNVNALKDRAEAYLIEE----------MYDEAI 326 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHHcC----------CHHHHH
Confidence 9999999998754 5567889999999999999999999 889999999999999988876 489999
Q ss_pred HHHHHHHhhcChh
Q 005817 528 ELLKCILTKVSAL 540 (676)
Q Consensus 528 ~~f~~Al~~~~~~ 540 (676)
+.|+++++..|..
T Consensus 327 ~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 327 QDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHTTCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999977653
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.5e-15 Score=156.53 Aligned_cols=267 Identities=9% Similarity=0.005 Sum_probs=225.0
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQ 216 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ 216 (676)
....+..+|++++...|.+...+..++..+...| ...+...+++++..+|.++..|...+.... ..| +.+.|...|+
T Consensus 37 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~ 115 (330)
T 3hym_B 37 DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLS 115 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence 3677889999999999999999998888887777 578999999999999999999999999886 577 9999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 217 NGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
+++...|.+..+|..++.+....
T Consensus 116 ~a~~~~~~~~~~~~~l~~~~~~~--------------------------------------------------------- 138 (330)
T 3hym_B 116 KATTLEKTYGPAWIAYGHSFAVE--------------------------------------------------------- 138 (330)
T ss_dssp HHHTTCTTCTHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHhCCccHHHHHHHHHHHHHc---------------------------------------------------------
Confidence 99999999988888777654321
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
++++.|...|+++++..|++...+..+..++... +..+.+...+++++...|+++.+|..++..+..
T Consensus 139 ----------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 139 ----------SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT---NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp ----------TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ----------cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 2567899999999999998877766655554432 467899999999999999999999999998876
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccC---------c-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---------S-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISH 446 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---------~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 446 (676)
.+++++|...|+++++..+ . ...|......... .|.++.
T Consensus 206 -------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~ 254 (330)
T 3hym_B 206 -------------NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK------------------LKKYAE 254 (330)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH------------------TTCHHH
T ss_pred -------------cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH------------------hcCHHH
Confidence 5789999999999998652 2 1244444333332 477899
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 447 a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
|...|++++..+|.++..|...+..+...|++++|...+++++ +..|++...|...+....
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH-ccCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 899999999998887653
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=5.3e-15 Score=161.34 Aligned_cols=370 Identities=13% Similarity=0.018 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMR---------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFH--------PKVPGVWIYAAAWE 201 (676)
Q Consensus 140 ~~~~~~iyeral~~---------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~--------P~~~~lW~~~a~~e 201 (676)
...|...|++|+.. .|.....|..++......| ...+...|++++.+. +..+.++...+...
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence 45677788888765 6777788888888887777 578899999999863 34556655443222
Q ss_pred HH-hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCC
Q 005817 202 FD-HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPL 280 (676)
Q Consensus 202 ~~-~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (676)
+. ..++++.|...|++++...|+++.+|..+......... ++
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~--------~~----------------------------- 189 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN--------WP----------------------------- 189 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH--------SC-----------------------------
T ss_pred HHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--------ch-----------------------------
Confidence 21 34679999999999999999999988877655332210 00
Q ss_pred CCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhc
Q 005817 281 DGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRD 359 (676)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe-~~~~~~~a~~il~~~~~~ 359 (676)
..+.|...|++|++..|++...+..+...+.... ..+..+.+...+++++..
T Consensus 190 ---------------------------~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~ 242 (472)
T 4g1t_A 190 ---------------------------PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK 242 (472)
T ss_dssp ---------------------------CCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 1234577889999999988766655443333322 123456789999999999
Q ss_pred CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHH----HHHHHHHHHhcCccccccCC
Q 005817 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFD----LYTKFLMDMIAPKKEETRDS 434 (676)
Q Consensus 360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~----~y~~~~~~~~~~~~~d~~~~ 434 (676)
.|+++.+|..+|..+.. .+++++|...|+++++..|... .+. .|.............. .
T Consensus 243 ~~~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~---~ 306 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRR-------------KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG---M 306 (472)
T ss_dssp CSSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CccHHHHHHHHHHHHHH-------------cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH---H
Confidence 99999999999998876 5789999999999999888654 222 1211111100000000 0
Q ss_pred CCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH---HHHHHHHHHHHHhc
Q 005817 435 ELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV---QLWLLRISVEIRCV 511 (676)
Q Consensus 435 ~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~---~lW~~~i~l~~~~~ 511 (676)
.......+..+.|...|++++..+|.....|...+..+...|++++|...|++++ ...|++. .++..+..+.....
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHC
Confidence 0000123457789999999999999999999999999999999999999999999 6667653 34455554443222
Q ss_pred cccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHH
Q 005817 512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLV 591 (676)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~ 591 (676)
. +.+++.+.|.+|+...|... .+.. ....+++++++++. ..|.. +......+...
T Consensus 386 ~---------~~~~Ai~~y~kal~i~~~~~---~~~~-------~~~~l~~~~~~~l~-~~p~~-----~~~~~~LG~~~ 440 (472)
T 4g1t_A 386 K---------CEDKAIHHFIEGVKINQKSR---EKEK-------MKDKLQKIAKMRLS-KNGAD-----SEALHVLAFLQ 440 (472)
T ss_dssp S---------CHHHHHHHHHHHHHSCCCCH---HHHH-------HHHHHHHHHHHHHH-HCC-C-----TTHHHHHHHHH
T ss_pred C---------CHHHHHHHHHHHHhcCcccH---HHHH-------HHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHH
Confidence 1 47888889999998655321 1111 11223334444443 33433 12222344445
Q ss_pred HHhcCHHHHHHHHHHHHcCCCCCH
Q 005817 592 IQKDGIQQAREMYKRFLALPRPGL 615 (676)
Q Consensus 592 ~~~g~~~~Ar~iy~~al~~~p~~~ 615 (676)
...|++++|.+.|++|+...|..+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHCC-----------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 567888888888888887654443
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.7e-15 Score=153.68 Aligned_cols=279 Identities=8% Similarity=-0.080 Sum_probs=228.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 149 LAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 149 ral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
..+...|.+..++...+..+...| +..+..+|++++...|.++..+..++...+ ..|+++.|..++++++...|.+..
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHH
Confidence 566678889999999999888777 588999999999999999999988888776 578999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHh
Q 005817 228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307 (676)
Q Consensus 228 lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (676)
+|...+...... +
T Consensus 92 ~~~~l~~~~~~~-------------------------------------------------------------------~ 104 (330)
T 3hym_B 92 SWFAVGCYYLMV-------------------------------------------------------------------G 104 (330)
T ss_dssp HHHHHHHHHHHS-------------------------------------------------------------------C
T ss_pred HHHHHHHHHHHh-------------------------------------------------------------------h
Confidence 887776543321 2
Q ss_pred -hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 308 -GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 308 -~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
+++.|...|+++++..|++...|..+..++... +..+.+...+++++...|++...|..++..+..
T Consensus 105 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~---------- 171 (330)
T 3hym_B 105 HKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE---SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL---------- 171 (330)
T ss_dssp SCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH----------
T ss_pred hhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH----------
Confidence 456789999999999999888887766665543 357899999999999999999999999998876
Q ss_pred CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC-------
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG------- 458 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~------- 458 (676)
.+++++|...|+++++..|... .|......... .|+++.|...|++++...
T Consensus 172 ---~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 172 ---TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ------------------NGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp ---TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred ---HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cccHHHHHHHHHHHHHHhhhccccc
Confidence 5789999999999999888654 55444443333 467899999999999874
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 459 --CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 459 --p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
|..+.+|...+..+...|++++|...+++++ ...|.+...|...+.+....| +.+++.+.|++++..
T Consensus 231 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 231 TVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL-VLIPQNASTYSAIGYIHSLMG----------NFENAVDYFHTALGL 299 (330)
T ss_dssp TTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCSHHHHHHHHHHHHHT----------CHHHHHHHHHTTTTT
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hhCccchHHHHHHHHHHHHhc----------cHHHHHHHHHHHHcc
Confidence 5567899999999999999999999999999 889999999999998888776 479999999999987
Q ss_pred cChh
Q 005817 537 VSAL 540 (676)
Q Consensus 537 ~~~~ 540 (676)
.|..
T Consensus 300 ~p~~ 303 (330)
T 3hym_B 300 RRDD 303 (330)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7644
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=3.1e-15 Score=157.23 Aligned_cols=283 Identities=12% Similarity=-0.001 Sum_probs=219.1
Q ss_pred HHHHH-HHHHHHHhCCCC----HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHH
Q 005817 141 ARILE-IYRLAVMRFKGD----IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARAL 214 (676)
Q Consensus 141 ~~~~~-iyeral~~~p~~----~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~ 214 (676)
..+.. .|++++...|.+ ...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...
T Consensus 42 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~ 120 (368)
T 1fch_A 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-ENEQELLAISA 120 (368)
T ss_dssp ----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHH
Confidence 44555 777777777776 355788888877777 578999999999999999999999999886 68899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817 215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (676)
Q Consensus 215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (676)
|++++...|.+..+|..++......
T Consensus 121 ~~~al~~~~~~~~~~~~l~~~~~~~------------------------------------------------------- 145 (368)
T 1fch_A 121 LRRCLELKPDNQTALMALAVSFTNE------------------------------------------------------- 145 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHT-------------------------------------------------------
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHc-------------------------------------------------------
Confidence 9999999999888887776554321
Q ss_pred hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHH---------------HHHHHHhcccCcHHHHHHHHHHHHhc
Q 005817 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRF---------------FEIVEATNLAQSDDMHDKILSDMQRD 359 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~---------------~~~~~~fe~~~~~~~a~~il~~~~~~ 359 (676)
++++.|...|++++...|.+...+... +..+.. .+..+.+...+++++..
T Consensus 146 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 146 ------------SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS---DSLFLEVKELFLAAVRL 210 (368)
T ss_dssp ------------TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh---cccHHHHHHHHHHHHHh
Confidence 245667778888887777665443211 111111 12467888999999999
Q ss_pred CCC--ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCC
Q 005817 360 FLV--DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSEL 436 (676)
Q Consensus 360 ~p~--~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~ 436 (676)
.|+ ++.+|..++..+.. .+++++|...|+++++..|... .|.........
T Consensus 211 ~p~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-------------- 263 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNL-------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-------------- 263 (368)
T ss_dssp STTSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------
T ss_pred CcCcccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--------------
Confidence 999 78889999988875 5789999999999999887643 55444433333
Q ss_pred ChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh-----------HHHHHHHHH
Q 005817 437 PSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS-----------VQLWLLRIS 505 (676)
Q Consensus 437 ~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~-----------~~lW~~~i~ 505 (676)
.|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+ ...|..++.
T Consensus 264 ----~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 264 ----GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------CCCCCHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCCCccccccchhhHHHHHHHH
Confidence 3779999999999999999999999999999999999999999999999 777876 899999998
Q ss_pred HHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 506 VEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 506 l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
.....|. .+.+..++.+++..
T Consensus 339 ~~~~~g~----------~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 339 ALSMLGQ----------SDAYGAADARDLST 359 (368)
T ss_dssp HHHHHTC----------GGGHHHHHTTCHHH
T ss_pred HHHHhCC----------hHhHHHhHHHHHHH
Confidence 8887764 56666666666543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=2.9e-15 Score=157.65 Aligned_cols=255 Identities=12% Similarity=0.010 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e 236 (676)
...|...+..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|...+.+.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 344888888777777 578999999999999999999999999886 688999999999999999999888887776654
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHH
Q 005817 237 LTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIY 316 (676)
Q Consensus 237 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy 316 (676)
... ++++.|..+|
T Consensus 144 ~~~-------------------------------------------------------------------g~~~~A~~~~ 156 (365)
T 4eqf_A 144 TNT-------------------------------------------------------------------SHQQDACEAL 156 (365)
T ss_dssp HHT-------------------------------------------------------------------TCHHHHHHHH
T ss_pred Hcc-------------------------------------------------------------------ccHHHHHHHH
Confidence 321 2567788899
Q ss_pred HHHHhcCCCchhHHHHHH-------HHHHHhcccCcHHHHHHHHHHHHhcCCC--ChhhHHHHHHHhccccCCCCCCCcC
Q 005817 317 SGAVEALPSSFNLRQRFF-------EIVEATNLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 317 ~~Al~~~p~~~~~~~~~~-------~~~~~fe~~~~~~~a~~il~~~~~~~p~--~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
+++++..|++...+..+. .+...+...+..+.+...+++++...|+ ++.+|..++..+..
T Consensus 157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~----------- 225 (365)
T 4eqf_A 157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL----------- 225 (365)
T ss_dssp HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-----------
T ss_pred HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-----------
Confidence 999988777655443320 0011111123567899999999999999 88899999988865
Q ss_pred cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
.+++++|...|+++++..|... .|......... .|+++.|+..|++++..+|.++..|.
T Consensus 226 --~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 226 --SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN------------------GDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp --HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 5789999999999999888644 56554444433 37799999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCC------------hHHHHHHHHHHHHHhcc
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSD------------SVQLWLLRISVEIRCVT 512 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~------------~~~lW~~~i~l~~~~~~ 512 (676)
..+..+...|++++|+..+++++ ...|. +..+|..........|.
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTAL-SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH-HHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999 76665 35778777776665553
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=9.7e-14 Score=151.30 Aligned_cols=370 Identities=12% Similarity=-0.023 Sum_probs=234.7
Q ss_pred HHHHHHHHHHHcc-CchHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-----
Q 005817 160 LWFKYMEFCRQRK-NGRMKKVLAQVIRF---------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPT----- 224 (676)
Q Consensus 160 lW~~y~~~~~~~~-~~~~~~~~~ral~~---------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~----- 224 (676)
++...+......| ++.|...|++|+.+ +|.....|...+.... ..|+++.|...|++++..+|.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccccc
Confidence 3333333333445 57899999999886 6777778888777775 688999999999999987542
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhh
Q 005817 225 ---SEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSV 301 (676)
Q Consensus 225 ---~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (676)
...++.........
T Consensus 132 ~~~~~~~~~~~g~~~~~--------------------------------------------------------------- 148 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLK--------------------------------------------------------------- 148 (472)
T ss_dssp CCCCHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 22222211100000
Q ss_pred hhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC
Q 005817 302 DLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK 381 (676)
Q Consensus 302 ~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~ 381 (676)
+..++++.|...|++|++..|++++++..+..++......+..+.+...++++++..|+++.++..++.......
T Consensus 149 --~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~--- 223 (472)
T 4g1t_A 149 --CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR--- 223 (472)
T ss_dssp --HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---
T ss_pred --HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH---
Confidence 001367899999999999999998888776655443332223456777889999999999998877765432211
Q ss_pred CCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC
Q 005817 382 DGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL 460 (676)
Q Consensus 382 ~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~ 460 (676)
...++++.|...|++++...|... .|......... .+.+++|...|++|+..+|.
T Consensus 224 ------~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 224 ------EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR------------------KDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp ------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHSTT
T ss_pred ------hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH------------------cCchHHHHHHHHHHHHhCCC
Confidence 114677899999999999887644 44333333322 46789999999999999999
Q ss_pred cHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChh
Q 005817 461 TEDIAHRYVTLYLQ-------------------LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKA 521 (676)
Q Consensus 461 ~~~lw~~~~~l~~~-------------------~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~ 521 (676)
++.++...+..+.. .+.++.|...+++++ ...|.+...|...+.+....+
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~lg~~~~~~~---------- 348 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILASLHALAD---------- 348 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH-HHCTTTCCCHHHHHHHHHHTT----------
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh-hcCCchhhhhhhHHHHHHHhc----------
Confidence 99988877765532 233677888899999 788998888888888887766
Q ss_pred chHHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817 522 DILSIFELLKCILTKVSALE-SESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~~~~~~-~~~lW~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~ 597 (676)
+.+++.+.|++|+...+... ...++..+........ +.+...|++|+. +.|.. .. ..+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-i~~~~-----~~----------~~~~~ 412 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-INQKS-----RE----------KEKMK 412 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-SCCCC-----HH----------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCccc-----HH----------HHHHH
Confidence 48999999999998654332 2223333332222111 334445565554 33332 11 12234
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCc
Q 005817 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNT 655 (676)
Q Consensus 598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~ 655 (676)
..+.+++++++...|.+...|.....+....| +.+.|.++|++|++..|..|
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g------~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNE------KMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH------HCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCCC
Confidence 56778889999888888888877777777777 88999999999999877544
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.5e-14 Score=147.24 Aligned_cols=268 Identities=9% Similarity=-0.034 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817 160 LWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELT 238 (676)
Q Consensus 160 lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~ 238 (676)
.|...+..+...| ...+..+|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|...+.....
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3444555544544 466777777777777777777777777665 56677777777777777777776666555443321
Q ss_pred HHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHH
Q 005817 239 YLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSG 318 (676)
Q Consensus 239 ~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~ 318 (676)
. ++++.|...|++
T Consensus 102 ~-------------------------------------------------------------------~~~~~A~~~~~~ 114 (327)
T 3cv0_A 102 E-------------------------------------------------------------------HNANAALASLRA 114 (327)
T ss_dssp T-------------------------------------------------------------------TCHHHHHHHHHH
T ss_pred c-------------------------------------------------------------------CCHHHHHHHHHH
Confidence 1 234556667777
Q ss_pred HHhcCCCchhHHHHHHHHH----------HH--hcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 319 AVEALPSSFNLRQRFFEIV----------EA--TNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 319 Al~~~p~~~~~~~~~~~~~----------~~--fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
+++..|.+...+..+.... .. +...+..+.+...+++++...|+++.+|..+|..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------- 184 (327)
T 3cv0_A 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL---------- 184 (327)
T ss_dssp HHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----------
T ss_pred HHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------
Confidence 7766666544443321110 11 1112245678888999999999999999999988865
Q ss_pred CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA 465 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw 465 (676)
.+++++|...|+++++..|... .|......... .|+++.|...|++++..+|.++..|
T Consensus 185 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 185 ---SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN------------------GNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ---hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 5789999999999999887643 45444433332 3678999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCC------------hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSD------------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------------~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A 533 (676)
...+..+...|++++|...+++++ ...|. +...|...+......|. .+++..+++++
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~ 312 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAI-YMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR----------PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC----------HHHHHHHTTCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhCCccccccccchhhcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHH
Confidence 999999999999999999999999 88888 78999999888887764 67777777766
Q ss_pred Hhhc
Q 005817 534 LTKV 537 (676)
Q Consensus 534 l~~~ 537 (676)
+...
T Consensus 313 l~~~ 316 (327)
T 3cv0_A 313 VEPF 316 (327)
T ss_dssp SHHH
T ss_pred HHhc
Confidence 6544
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=1.9e-14 Score=151.43 Aligned_cols=258 Identities=10% Similarity=0.021 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|..+|++++...|.+...|..++..+...| ...+...|++++..+|.++..|...+.... ..|+++.|..+|+++
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHH
Confidence 577899999999999999999999999998887 578999999999999999999999999886 788999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
+...|.+..+|........... .++.
T Consensus 160 l~~~p~~~~~~~~~~~~~~~~~--------~l~~---------------------------------------------- 185 (365)
T 4eqf_A 160 IKQNPKYKYLVKNKKGSPGLTR--------RMSK---------------------------------------------- 185 (365)
T ss_dssp HHHCHHHHCC----------------------------------------------------------------------
T ss_pred HHhCccchHHHhhhccchHHHH--------HHHH----------------------------------------------
Confidence 9999976665554421100000 0000
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPS--SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~--~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
.....++++.|..+|+++++..|+ +...+..+..++... +..+.+...+++++...|+++.+|..++..+..
T Consensus 186 ---~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 186 ---SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS---GEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 000124778999999999999998 677777665555443 367899999999999999999999999999876
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHH
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAE 455 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al 455 (676)
.+++++|+..|+++++..|... .|......... .|++++|+..|++++
T Consensus 260 -------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 260 -------------GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN------------------LGAYREAVSNFLTAL 308 (365)
T ss_dssp -------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCCHHHHHHHHHHH
T ss_pred -------------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH------------------CCCHHHHHHHHHHHH
Confidence 5789999999999999888643 45444443333 467899999999999
Q ss_pred HcCCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 456 AMGCL------------TEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 456 ~~~p~------------~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
...|. +..+|...+..+...|+.+.|..+..+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 98665 35789999999999999999888777665
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=4.9e-14 Score=144.95 Aligned_cols=267 Identities=16% Similarity=0.083 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+..+|++++...|++...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW 115 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 577899999999999999999999999888877 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
+...|.+..+|..+......... .. .++. .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~--------------------------~------------------- 145 (327)
T 3cv0_A 116 LLSQPQYEQLGSVNLQADVDIDD---LN--VQSE--------------------------D------------------- 145 (327)
T ss_dssp HHTSTTTTTC----------------------------------------------------------------------
T ss_pred HHhCCccHHHHHHHhHHHHHHHH---HH--HHHH--------------------------h-------------------
Confidence 99999887766655322110000 00 0000 0
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcccc
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDS 378 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~ 378 (676)
.-....++++.|..+|+++++..|++...+..+..++... +..+.+...+++++...|+++.+|..+|..+..
T Consensus 146 --~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 218 (327)
T 3cv0_A 146 --FFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS---NNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-- 218 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred --HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--
Confidence 0011135778999999999999999887777766655443 357889999999999999999999999998876
Q ss_pred CCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817 379 VSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (676)
Q Consensus 379 ~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~ 457 (676)
.+++++|...|+++++..|... .|......... .|+++.|...|++++..
T Consensus 219 -----------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 219 -----------GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN------------------MSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp -----------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHH
T ss_pred -----------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHh
Confidence 5789999999999999887643 44443333332 47789999999999999
Q ss_pred CCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817 458 GCL------------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (676)
Q Consensus 458 ~p~------------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P 494 (676)
.|. ++..|...+..+...|++++|..++++++ ..+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~ 317 (327)
T 3cv0_A 270 QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV-EPFA 317 (327)
T ss_dssp HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS-HHHH
T ss_pred CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hhcc
Confidence 888 78999999999999999999999999888 5444
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.60 E-value=1.7e-13 Score=143.74 Aligned_cols=264 Identities=14% Similarity=0.062 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....+...|++++...|.+...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|++
T Consensus 79 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 157 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRD 157 (368)
T ss_dssp CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 3578899999999999999999999999988887 578999999999999999999999999886 68899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
++...|.+..+|........... .+. . .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----------------------~--------------------~ 185 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAG---------LGP-----------------------S--------------------K 185 (368)
T ss_dssp HHHTSTTTGGGCC-------------------------------------------------------------------
T ss_pred HHHhCcCcHHHHHHHHHHhhhhc---------ccH-----------------------H--------------------H
Confidence 99999998766644322110000 000 0 0
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhc
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPS--SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKM 375 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~--~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~ 375 (676)
......+..++++.|..+|+++++..|+ +...+..+..++... +..+.+...+++++...|+++.+|..+|..+.
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 0011122346889999999999999998 666666665555443 36788999999999999999999999999887
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKA 454 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~a 454 (676)
. .+++++|...|+++++..|... .|......... .|+++.|...|+++
T Consensus 263 ~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~a 311 (368)
T 1fch_A 263 N-------------GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN------------------LGAHREAVEHFLEA 311 (368)
T ss_dssp H-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHH
T ss_pred H-------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------------------CCCHHHHHHHHHHH
Confidence 6 5789999999999999877643 44333333332 47799999999999
Q ss_pred HHcCCCc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 455 EAMGCLT-----------EDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 455 l~~~p~~-----------~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+...|.+ ..+|...+..+...|++++|..++.+++
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9987776 8999999999999999999999988877
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2.1e-13 Score=144.36 Aligned_cols=264 Identities=11% Similarity=0.078 Sum_probs=207.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCHH
Q 005817 150 AVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN-VTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 150 al~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~-~~~Ar~~~~ral~~~p~~~~ 227 (676)
++...|++...|......+...| +..+...|++++.++|+++.+|...+.... ..|+ ++.|...|++++..+|++..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHH
Confidence 45567888899998888887777 689999999999999999999999999886 5675 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHh
Q 005817 228 LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQ 307 (676)
Q Consensus 228 lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (676)
+|.....+.... +
T Consensus 168 a~~~~g~~~~~~-------------------------------------------------------------------g 180 (382)
T 2h6f_A 168 VWHHRRVLVEWL-------------------------------------------------------------------R 180 (382)
T ss_dssp HHHHHHHHHHHH-------------------------------------------------------------------T
T ss_pred HHHHHHHHHHHc-------------------------------------------------------------------c
Confidence 998877654321 1
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
+++.|...|++|++..|++...|..+-.++..++ ..+.+...++++++.+|++..+|..++..+....+...
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g---~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~----- 252 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK---LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND----- 252 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT---CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS-----
T ss_pred CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch-----
Confidence 4456899999999999999998887766666554 45689999999999999999999999988765211100
Q ss_pred cchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAH 466 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~ 466 (676)
...++.+...|++++...|... .|......... . + .+.++++...++++ ..+|.++..+.
T Consensus 253 --eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~-~---g------------~~~~~~a~~~~~~~-~~~p~~~~al~ 313 (382)
T 2h6f_A 253 --RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-R---G------------LSKYPNLLNQLLDL-QPSHSSPYLIA 313 (382)
T ss_dssp --HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-T---C------------GGGCHHHHHHHHHH-TTTCCCHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-c---C------------ccchHHHHHHHHHh-ccCCCCHHHHH
Confidence 1113445789999999988765 55433322221 0 0 12467788888887 77899999999
Q ss_pred HHHHHHHhcC---------CHHHHHHHHHHH-hhccCCChHHHHHHHHHHHHH
Q 005817 467 RYVTLYLQLG---------KLDEARKLAAKL-CSGKLSDSVQLWLLRISVEIR 509 (676)
Q Consensus 467 ~~~~l~~~~~---------~~~~A~~l~~~a-l~~~~P~~~~lW~~~i~l~~~ 509 (676)
..+.++.+.| .+++|+.+|+++ + +..|.....|..++.....
T Consensus 314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~-~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 314 FLVDIYEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHH
Confidence 9999988764 258999999999 8 8899999999988766553
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=2.4e-12 Score=125.06 Aligned_cols=210 Identities=13% Similarity=0.015 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (676)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~ 233 (676)
|.+...|...+..+...| ...+...|++++...|+++..|...+.... ..|+++.|...|++++...|++...|..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 777888888888877776 478888899999999998888888888875 678889999999999999998888877766
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (676)
.+...... . .
T Consensus 81 ~~~~~~~~---------~--------------------------------------------------------~----- 90 (217)
T 2pl2_A 81 EAYVALYR---------Q--------------------------------------------------------A----- 90 (217)
T ss_dssp HHHHHHHH---------T--------------------------------------------------------C-----
T ss_pred HHHHHhhh---------h--------------------------------------------------------h-----
Confidence 55432100 0 0
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHH
Q 005817 314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQM 393 (676)
Q Consensus 314 ~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
+. .. .. .+..+.+...++++++..|+++.+|..++..+.. .+++
T Consensus 91 ----------~~---~~------~~----~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-------------~g~~ 134 (217)
T 2pl2_A 91 ----------ED---RE------RG----KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-------------LGER 134 (217)
T ss_dssp ----------SS---HH------HH----HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCH
T ss_pred ----------hh---hc------cc----ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------------cCCh
Confidence 00 00 00 0134567777778888888888888888887765 5788
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 005817 394 QKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYL 473 (676)
Q Consensus 394 ~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~ 473 (676)
++|+..|+++++.......|......... .|+++.|+..|++++..+|.++..+...+.++.
T Consensus 135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 135 DKAEASLKQALALEDTPEIRSALAELYLS------------------MGRLDEALAQYAKALEQAPKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999876222344443333332 477899999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHh
Q 005817 474 QLGKLDEARKLAAKLC 489 (676)
Q Consensus 474 ~~~~~~~A~~l~~~al 489 (676)
..|++++|...++++-
T Consensus 197 ~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 197 LKGKAEEAARAAALEH 212 (217)
T ss_dssp C---------------
T ss_pred HccCHHHHHHHHHHHh
Confidence 9999999998888765
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.7e-12 Score=123.64 Aligned_cols=234 Identities=11% Similarity=-0.025 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005817 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS-------EELW 229 (676)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~-------~~lW 229 (676)
...|...+..+...| +..+...|++++... .++..|...+.... ..|+++.|...|++++...|.+ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 466777777777766 578999999999999 88999999999886 6889999999999999998865 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhh
Q 005817 230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL 309 (676)
Q Consensus 230 ~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (676)
...+..... .+++
T Consensus 83 ~~l~~~~~~-------------------------------------------------------------------~~~~ 95 (258)
T 3uq3_A 83 ARIGNAYHK-------------------------------------------------------------------LGDL 95 (258)
T ss_dssp HHHHHHHHH-------------------------------------------------------------------TTCH
T ss_pred HHHHHHHHH-------------------------------------------------------------------cccH
Confidence 333322111 1356
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817 310 RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (676)
Q Consensus 310 ~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~ 389 (676)
+.|...|++++...|.. ... ... +..+.+...+++++...|.++.+|..+|..+..
T Consensus 96 ~~A~~~~~~a~~~~~~~-~~~-------~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 151 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRTA-DIL-------TKL---RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT------------- 151 (258)
T ss_dssp HHHHHHHHHHHHHCCCH-HHH-------HHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhcCchh-HHH-------HHH---hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-------------
Confidence 78999999999988763 221 111 235678889999999999999999999998876
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
.++++.|...|+++++..|... .|......... .|+++.|...|++++..+|.++..|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~~l 213 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------LMSFPEAIADCNKAIEKDPNFVRAYIRK 213 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 5789999999999999888644 44433333322 3678999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLR 503 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~ 503 (676)
+..+...|++++|...+++++ +.. |.+..++...
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH-HhChhhcCCCchHHHHHHH
Confidence 999999999999999999999 777 7777776654
No 34
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.9e-11 Score=129.33 Aligned_cols=244 Identities=10% Similarity=0.089 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK--NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~--~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
..+|...|++++...|++...|......+...| ...+...|++++..+|+++.+|...+.... ..|+++.|...|++
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIAD 191 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 578899999999999999999999999988876 478999999999999999999999999875 67899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
+|...|++..+|.....+....
T Consensus 192 al~ldP~~~~a~~~lg~~~~~~---------------------------------------------------------- 213 (382)
T 2h6f_A 192 ILNQDAKNYHAWQHRQWVIQEF---------------------------------------------------------- 213 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred HHHhCccCHHHHHHHHHHHHHc----------------------------------------------------------
Confidence 9999999999997766543321
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHH-----HHHHHHHHhcCCCChhhHHHHHH
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMH-----DKILSDMQRDFLVDPKYWDWLAR 372 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a-----~~il~~~~~~~p~~~~~w~~la~ 372 (676)
+.++.|...|++|++..|++...|..+..++.... +..+.+ ...+++++...|++..+|..++.
T Consensus 214 ---------g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~--~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 214 ---------KLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT--GYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282 (382)
T ss_dssp ---------TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--CSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred ---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 13456899999999999999999988776665522 111233 47799999999999999999998
Q ss_pred HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHH
Q 005817 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVY 451 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iy 451 (676)
.+...+ .+++++|.+.++++ +..|... .+...+............+ ..+.+++|..+|
T Consensus 283 ll~~~g-----------~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~---------~~~~~~~A~~~~ 341 (382)
T 2h6f_A 283 ILQDRG-----------LSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN---------KEDILNKALELC 341 (382)
T ss_dssp HHTTTC-----------GGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS---------HHHHHHHHHHHH
T ss_pred HHHccC-----------ccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc---------hHHHHHHHHHHH
Confidence 775421 12577888888877 5555433 3333333333321000000 012368999999
Q ss_pred HHH-HHcCCCcHHHHHHHHHHHHh
Q 005817 452 EKA-EAMGCLTEDIAHRYVTLYLQ 474 (676)
Q Consensus 452 e~a-l~~~p~~~~lw~~~~~l~~~ 474 (676)
+++ +..+|.....|...+..+..
T Consensus 342 ~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 342 EILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHH
Confidence 999 89999999999998887654
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=5.3e-12 Score=126.36 Aligned_cols=248 Identities=10% Similarity=0.005 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH----HHHH
Q 005817 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEEL----WVEY 232 (676)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~l----W~~y 232 (676)
.+.+..++..+...| ++.+...|++++...|.++..|...+.... ..|+++.|...|++++. .|.++.+ |...
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 456677777777776 578999999999999999999999988776 68899999999999999 5544433 4333
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (676)
Q Consensus 233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (676)
+..... .++++.|
T Consensus 81 g~~~~~-------------------------------------------------------------------~~~~~~A 93 (272)
T 3u4t_A 81 GKILMK-------------------------------------------------------------------KGQDSLA 93 (272)
T ss_dssp HHHHHH-------------------------------------------------------------------TTCHHHH
T ss_pred HHHHHH-------------------------------------------------------------------cccHHHH
Confidence 332211 1356788
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH-HHhccccCCCCCCCcCcchh
Q 005817 313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA-RLKMTDSVSKDGTSEDIVPS 391 (676)
Q Consensus 313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la-~~~~~~~~~~~~~~~~~~~~ 391 (676)
...|+++++..|++...+..+..++... +..+.+...+++++...|.++.+|..++ ..+.. +
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------~ 156 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNK---GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN--------------K 156 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHT---TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT--------------T
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHc---cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--------------H
Confidence 9999999999998888887776666543 3578899999999999999999999999 66543 4
Q ss_pred HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC---CC-----cH
Q 005817 392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CL-----TE 462 (676)
Q Consensus 392 ~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~---p~-----~~ 462 (676)
++++|...|+++++..|... .|........... . ....+.|...|++++... |. ..
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~---~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQD---P------------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS---T------------TCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC---c------------chhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 78999999999999888643 2222222222210 0 011455777777777653 33 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
..|...+.++...|++++|...+++++ ...|+++..|.....+.
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNIL-ALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCccHHHHHHHhhhhh
Confidence 678889999999999999999999999 89999998887765443
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=4.7e-11 Score=118.01 Aligned_cols=212 Identities=11% Similarity=0.040 Sum_probs=151.8
Q ss_pred hCCCC-HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817 153 RFKGD-IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 153 ~~p~~-~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~ 230 (676)
..|.+ ...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 45655 678888888777766 578888999999999988888888888875 678899999999999998888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH
Q 005817 231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR 310 (676)
Q Consensus 231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (676)
.++.+.... ++++
T Consensus 110 ~la~~~~~~-------------------------------------------------------------------g~~~ 122 (252)
T 2ho1_A 110 NYGGFLYEQ-------------------------------------------------------------------KRYE 122 (252)
T ss_dssp HHHHHHHHT-------------------------------------------------------------------TCHH
T ss_pred HHHHHHHHH-------------------------------------------------------------------hHHH
Confidence 665443221 2456
Q ss_pred HHHHHHHHHHh--cCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCc
Q 005817 311 VLQTIYSGAVE--ALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (676)
Q Consensus 311 ~a~~iy~~Al~--~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~ 388 (676)
.|..+|++++. ..|.+. .+|..+|..+..
T Consensus 123 ~A~~~~~~~~~~~~~~~~~-------------------------------------~~~~~la~~~~~------------ 153 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERS-------------------------------------RVFENLGLVSLQ------------ 153 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHH-------------------------------------HHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCccCcccH-------------------------------------HHHHHHHHHHHH------------
Confidence 77888887777 334332 333344444433
Q ss_pred chhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 389 ~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
.+++++|...|+++++..|... .|...+..... .|+++.|...|++++...|.++..+..
T Consensus 154 -~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~ 214 (252)
T 2ho1_A 154 -MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK------------------EREYVPARQYYDLFAQGGGQNARSLLL 214 (252)
T ss_dssp -TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3567777777877777666533 33333333322 356788888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
.+.++...|++++|...+++++ ...|+++..+.
T Consensus 215 ~~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ 247 (252)
T 2ho1_A 215 GIRLAKVFEDRDTAASYGLQLK-RLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHCTTSHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH-HHCCCCHHHHH
Confidence 8888888899999998999888 77888776554
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=1e-10 Score=112.85 Aligned_cols=213 Identities=13% Similarity=0.019 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y 232 (676)
.|.+...|...+..+...| ...+...|++++...|.++..|...+.... ..|+++.|..+|++++...|.+..+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4555566666666555554 355666666666666666666666665554 45566666666666666666555544433
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH-hhhHH
Q 005817 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE-QGLRV 311 (676)
Q Consensus 233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 311 (676)
+.+... . ++++.
T Consensus 83 ~~~~~~-------------------------------------------------------------------~~~~~~~ 95 (225)
T 2vq2_A 83 GWFLCG-------------------------------------------------------------------RLNRPAE 95 (225)
T ss_dssp HHHHHT-------------------------------------------------------------------TTCCHHH
T ss_pred HHHHHH-------------------------------------------------------------------hcCcHHH
Confidence 322110 0 13345
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh
Q 005817 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (676)
Q Consensus 312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~ 391 (676)
|...|+++++ .| ..|.+..+|..++..+.. .+
T Consensus 96 A~~~~~~~~~-~~----------------------------------~~~~~~~~~~~l~~~~~~-------------~~ 127 (225)
T 2vq2_A 96 SMAYFDKALA-DP----------------------------------TYPTPYIANLNKGICSAK-------------QG 127 (225)
T ss_dssp HHHHHHHHHT-ST----------------------------------TCSCHHHHHHHHHHHHHH-------------TT
T ss_pred HHHHHHHHHc-Cc----------------------------------CCcchHHHHHHHHHHHHH-------------cC
Confidence 5555555555 11 223334445555555543 35
Q ss_pred HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC-CcHHHHHHHH
Q 005817 392 QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTEDIAHRYV 469 (676)
Q Consensus 392 ~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p-~~~~lw~~~~ 469 (676)
++++|...|+++++..|... .|...+..... .|+++.|...|++++..+| .++..+...+
T Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKML------------------AGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 67777788888777666533 33333332222 3567888888888888878 7788887778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
.++...|+.+.|...++.++ +..|+++..+.
T Consensus 190 ~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~ 220 (225)
T 2vq2_A 190 KIAKALGNAQAAYEYEAQLQ-ANFPYSEELQT 220 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHH-HhCCCCHHHHH
Confidence 88888888888888888877 67787766543
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=1.7e-11 Score=120.12 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhc
Q 005817 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIA 425 (676)
Q Consensus 347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~ 425 (676)
+.+...+++++...|+++.+|..++..+.. .+++++|...|+++++..|... .|.........
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 171 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVK-------------LEQPKLALPYLQRAVELNENDTEARFQFGMCLAN--- 171 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-------------TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---
Confidence 344444444444445555555556655544 4667888888888887766533 44333333332
Q ss_pred CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
.|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|..+..
T Consensus 172 ---------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 172 ---------------EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI-DIQPDHMLALHAKKL 235 (243)
T ss_dssp ---------------HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH-HHCTTCHHHHHHHTC
T ss_pred ---------------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-ccCcchHHHHHHHHH
Confidence 3567889999999999889999999999999999999999999999999 889999888877665
Q ss_pred HHH
Q 005817 506 VEI 508 (676)
Q Consensus 506 l~~ 508 (676)
+..
T Consensus 236 l~~ 238 (243)
T 2q7f_A 236 LGH 238 (243)
T ss_dssp ---
T ss_pred HHh
Confidence 443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=6.5e-11 Score=114.89 Aligned_cols=192 Identities=13% Similarity=-0.016 Sum_probs=143.4
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
++++.|...|+++++..|++...+..+-.++... +..+.+...++++++..|+++..|..++..+........ ..
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~--~~ 93 (217)
T 2pl2_A 19 GRYDAALTLFERALKENPQDPEALYWLARTQLKL---GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE--DR 93 (217)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCS--SH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh--hh
Confidence 5678999999999999999988887766555443 357889999999999999999999999998865100000 00
Q ss_pred CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHH
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIA 465 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw 465 (676)
....+++++|...|+++++..|... .|......... .|.++.|+..|++++..+ .++..|
T Consensus 94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL------------------LGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH------------------cCChHHHHHHHHHHHhcc-cchHHH
Confidence 0001899999999999999888654 44433333322 477999999999999999 899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817 466 HRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (676)
Q Consensus 466 ~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A 533 (676)
...+..+...|++++|+..+++++ +..|+++.+|..++.+....|. .+++.+.|+++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al-~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKAL-EQAPKDLDLRVRYASALLLKGK----------AEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHTC------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHccC----------HHHHHHHHHHH
Confidence 999999999999999999999999 8999999999999888776653 55565555554
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=2.7e-10 Score=113.74 Aligned_cols=235 Identities=11% Similarity=0.028 Sum_probs=156.8
Q ss_pred CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch-hH----HHHHHH
Q 005817 344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS-MI----FDLYTK 418 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~-~l----w~~y~~ 418 (676)
+..+.+...+++++...|+++.+|..+|..+.. .+++++|...|+++++ .|.. .. |.....
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-------------LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 356788888888888899888888888887765 5788999999999998 4432 22 322222
Q ss_pred HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 419 FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 419 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
.... .|+++.|...|++++..+|.++..|...+.++...|++++|...+++++ ...|.+..
T Consensus 83 ~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 143 (272)
T 3u4t_A 83 ILMK------------------KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTTTDPK 143 (272)
T ss_dssp HHHH------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSCCCHH
T ss_pred HHHH------------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCCCcHH
Confidence 2222 3678999999999999999999999999999999999999999999999 88999999
Q ss_pred HHHHHH-HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH--hh---hHHHHHHHHHHHHhhh
Q 005817 499 LWLLRI-SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFM--NQ---KHYFDKLVEIALISVA 572 (676)
Q Consensus 499 lW~~~i-~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~--~~---~~~~~~~~~~a~~~~~ 572 (676)
.|...+ .+.... +.+++.+.|++++...|... ..|......+. .. .+.+...+++++....
T Consensus 144 ~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 144 VFYELGQAYYYNK-----------EYVKADSSFVKVLELKPNIY--IGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCccch--HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 998888 554432 47889999999998776542 22222111111 11 1113334444443321
Q ss_pred hCCCCCCCc---chHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817 573 KDGGGESGF---SLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE 625 (676)
Q Consensus 573 ~~~~~~~~~---~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE 625 (676)
..... ... ......+......|++++|...|++++...|.+...+.....+.
T Consensus 211 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 211 PGGAK-YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp GGGGG-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred ccccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 11100 000 11112334455677888888888888877777777666555444
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=4.4e-10 Score=110.86 Aligned_cols=226 Identities=11% Similarity=-0.029 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhh
Q 005817 190 VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRW 269 (676)
Q Consensus 190 ~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 269 (676)
....|...+...+ ..|+++.|..+|++++... .+..+|...+......
T Consensus 4 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~------------------------------ 51 (258)
T 3uq3_A 4 MADKEKAEGNKFY-KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEK------------------------------ 51 (258)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHc------------------------------
Confidence 3567888888876 6889999999999999999 7777776666543321
Q ss_pred hhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCc-------hhHHHHHHHHHHHhcc
Q 005817 270 INENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSS-------FNLRQRFFEIVEATNL 342 (676)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~-------~~~~~~~~~~~~~fe~ 342 (676)
++++.|...|+++++..|+. ...+..+..++...
T Consensus 52 -------------------------------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 92 (258)
T 3uq3_A 52 -------------------------------------GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL-- 92 (258)
T ss_dssp -------------------------------------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred -------------------------------------ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc--
Confidence 25677888999999876654 34454444444332
Q ss_pred cCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHH
Q 005817 343 AQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLM 421 (676)
Q Consensus 343 ~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~ 421 (676)
+..+.+...+++++...|.. . .+.. .+++++|...|++++...|... .|........
T Consensus 93 -~~~~~A~~~~~~a~~~~~~~-~-------~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 93 -GDLKKTIEYYQKSLTEHRTA-D-------ILTK-------------LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF 150 (258)
T ss_dssp -TCHHHHHHHHHHHHHHCCCH-H-------HHHH-------------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHhcCchh-H-------HHHH-------------HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 35788999999999988872 1 1211 4678999999999998766533 4443333333
Q ss_pred HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
. .|+++.|...|++++..+|.++.+|...+..+...|++++|...+++++ ...|++...|.
T Consensus 151 ~------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 211 (258)
T 3uq3_A 151 T------------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI-EKDPNFVRAYI 211 (258)
T ss_dssp H------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred H------------------hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCHHHHHHHH
Confidence 2 4678999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 502 ~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
..+......| +.+++.+.|++++...
T Consensus 212 ~l~~~~~~~g----------~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 212 RKATAQIAVK----------EYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------hHHHHHHHHHHHHHhC
Confidence 9998888776 4789999999999865
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.33 E-value=3.7e-10 Score=111.41 Aligned_cols=188 Identities=6% Similarity=-0.040 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...|++++...|.+...|...+..+...| ...+...|++++...|.++.+|...+.... ..|+++.|..+|+++
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEA 131 (252)
T ss_dssp TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 456789999999999999999999999988877 578999999999999999999999999886 688999999999999
Q ss_pred HH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchh
Q 005817 219 LR--VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENME 296 (676)
Q Consensus 219 l~--~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (676)
+. ..|.+..+|..++.....
T Consensus 132 ~~~~~~~~~~~~~~~la~~~~~---------------------------------------------------------- 153 (252)
T 2ho1_A 132 SQDTLYPERSRVFENLGLVSLQ---------------------------------------------------------- 153 (252)
T ss_dssp TTCTTCTTHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred HhCccCcccHHHHHHHHHHHHH----------------------------------------------------------
Confidence 99 667666666555443221
Q ss_pred hhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhcc
Q 005817 297 SQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMT 376 (676)
Q Consensus 297 ~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~ 376 (676)
.++++.|...|+++++..|.+...+..+..++... +..+.+...+++++...|+++..|..++..+..
T Consensus 154 ---------~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 154 ---------MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE---REYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp ---------TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 13668899999999988887766665555444332 245666777777777777776666666666543
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~ 411 (676)
.++.++|...|+++++..|...
T Consensus 222 -------------~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 222 -------------FEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp -------------TTCHHHHHHHHHHHHHHCTTSH
T ss_pred -------------ccCHHHHHHHHHHHHHHCCCCH
Confidence 3556667777777766655443
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.33 E-value=1.7e-10 Score=115.33 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=136.2
Q ss_pred hhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 005817 138 SGVARILEIYRLAVMRF----KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAAR 212 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~----p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar 212 (676)
.....+...|++++... |.+...|...+..+...| ...+...|++++..+|.++..|...+.... ..|+++.|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHH
Confidence 45788999999999874 456788888888888777 578999999999999999999999999886 688999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCC
Q 005817 213 ALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQP 292 (676)
Q Consensus 213 ~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (676)
..|++++...|.+..+|...+.+....
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~----------------------------------------------------- 124 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYG----------------------------------------------------- 124 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHT-----------------------------------------------------
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHh-----------------------------------------------------
Confidence 999999999999888887776654321
Q ss_pred cchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005817 293 ENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLAR 372 (676)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~ 372 (676)
++++.|..+|+++++..|++....... .++.. .+..+.+...+.+++...|.+...|. ++.
T Consensus 125 --------------g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 185 (275)
T 1xnf_A 125 --------------GRDKLAQDDLLAFYQDDPNDPFRSLWL-YLAEQ---KLDEKQAKEVLKQHFEKSDKEQWGWN-IVE 185 (275)
T ss_dssp --------------TCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHH---HHCHHHHHHHHHHHHHHSCCCSTHHH-HHH
T ss_pred --------------ccHHHHHHHHHHHHHhCCCChHHHHHH-HHHHH---hcCHHHHHHHHHHHHhcCCcchHHHH-HHH
Confidence 256788999999999988875333211 11111 12456777777777777777766654 333
Q ss_pred HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~ 408 (676)
..+. .+..+.|...|++++...|
T Consensus 186 ~~~~-------------~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 186 FYLG-------------NISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHTT-------------SSCHHHHHHHHHHHCCSHH
T ss_pred HHHH-------------hcCHHHHHHHHHHHhcccc
Confidence 3322 2334667777777766544
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=7.1e-10 Score=106.79 Aligned_cols=166 Identities=9% Similarity=-0.006 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CCHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN-LNVTAARALM 215 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~-~~~~~Ar~~~ 215 (676)
+....+...|++++...|.+...|...+..+...| ...+...|++++...|.++..|...+.... .. |+++.|...|
T Consensus 22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~ 100 (225)
T 2vq2_A 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYF 100 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHH
Confidence 34678899999999999999999999999988877 578999999999999999999999999886 67 8999999999
Q ss_pred HHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCc
Q 005817 216 QNGLR--VCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPE 293 (676)
Q Consensus 216 ~ral~--~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (676)
++++. ..|.+..+|..++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------------------------------- 125 (225)
T 2vq2_A 101 DKALADPTYPTPYIANLNKGICSAK------------------------------------------------------- 125 (225)
T ss_dssp HHHHTSTTCSCHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHHHcCcCCcchHHHHHHHHHHHHH-------------------------------------------------------
Confidence 99999 444445555544433221
Q ss_pred chhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCC-CChhhHHHHHH
Q 005817 294 NMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL-VDPKYWDWLAR 372 (676)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p-~~~~~w~~la~ 372 (676)
.++++.|...|+++++..|++...+..+..++... +..+.+...+++++...| +++..|..++.
T Consensus 126 ------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 190 (225)
T 2vq2_A 126 ------------QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA---GQLGDADYYFKKYQSRVEVLQADDLLLGWK 190 (225)
T ss_dssp ------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 12567788888888888777665555444333322 234455555555555555 55544444444
Q ss_pred Hh
Q 005817 373 LK 374 (676)
Q Consensus 373 ~~ 374 (676)
.+
T Consensus 191 ~~ 192 (225)
T 2vq2_A 191 IA 192 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=4.2e-10 Score=105.49 Aligned_cols=171 Identities=7% Similarity=-0.038 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817 156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (676)
Q Consensus 156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~ 234 (676)
.+..+|..........| ++.|...|++++..+|+++..|...+.... ..|+++.|...+.+++...|.+..+|...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 46788999999888877 589999999999999999999999999886 6889999999999999999999888877665
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHH
Q 005817 235 MELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQT 314 (676)
Q Consensus 235 ~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 314 (676)
+.... ++++.|..
T Consensus 82 ~~~~~-------------------------------------------------------------------~~~~~a~~ 94 (184)
T 3vtx_A 82 ANFMI-------------------------------------------------------------------DEKQAAID 94 (184)
T ss_dssp HHHHT-------------------------------------------------------------------TCHHHHHH
T ss_pred HHHHc-------------------------------------------------------------------CCHHHHHH
Confidence 43321 24567888
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHH
Q 005817 315 IYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394 (676)
Q Consensus 315 iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~ 394 (676)
.+.+++...|.+...+..+-.++... +..+.|...++++++..|+++.+|..+|..+.. .++++
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-------------~g~~~ 158 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSM---GEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-------------KGLRD 158 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHh---CCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-------------CCCHH
Confidence 99999999999888877765555443 367899999999999999999999999999876 57899
Q ss_pred HHHHHHHHHhhccCch
Q 005817 395 KAIQVYEEALKNVPSS 410 (676)
Q Consensus 395 ~A~~~ye~al~~~~~~ 410 (676)
+|+..|++|++..|..
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999877753
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.26 E-value=2e-10 Score=112.36 Aligned_cols=205 Identities=8% Similarity=-0.069 Sum_probs=156.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSK 520 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~ 520 (676)
.|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...+.+....+
T Consensus 36 ~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~--------- 105 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL-ELDSSAATAYYGAGNVYVVKE--------- 105 (243)
T ss_dssp ------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT---------
T ss_pred hhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcchHHHHHHHHHHHHhc---------
Confidence 4678899999999999999999999999999999999999999999999 889999999999998888766
Q ss_pred hchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHH
Q 005817 521 ADILSIFELLKCILTKVSALESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (676)
Q Consensus 521 ~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~ 598 (676)
+.+++.+.|++++...|.. ..+|......+...+ +.+...+++++.. .|.. .......+......|+++
T Consensus 106 -~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 106 -MYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NEND-----TEARFQFGMCLANEGMLD 176 (243)
T ss_dssp -CHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTC-----HHHHHHHHHHHHHHTCCH
T ss_pred -cHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc-----HHHHHHHHHHHHHcCCHH
Confidence 4899999999999877643 334554444443332 4455566666642 3332 233335566678899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHHHhhcCC
Q 005817 599 QAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYSTETKVSF 670 (676)
Q Consensus 599 ~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~fE~~~G~ 670 (676)
+|...|++++...|.....+...+.+....+ +.+.|..+|+++++..|+++..|.....++..+|.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKE------NREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcc------CHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 9999999999988888888888888887877 88999999999999999999999888888776653
No 47
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=9.6e-10 Score=111.83 Aligned_cols=184 Identities=6% Similarity=-0.038 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCC
Q 005817 308 GLRVLQTIYSGAVEA--LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTS 385 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~--~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~ 385 (676)
+.+.|...|++.+.. .|++..++..+-.++..- +..+.+...+++ |+++.++..++..+..
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~---g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~--------- 142 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD---QNPDAALRTLHQ-----GDSLECMAMTVQILLK--------- 142 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT---TCHHHHHHHHTT-----CCSHHHHHHHHHHHHH---------
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC---CCHHHHHHHHhC-----CCCHHHHHHHHHHHHH---------
Confidence 567889999998875 588877766554444332 356777777766 8899999999998876
Q ss_pred cCcchhHHHHHHHHHHHHhhccCchh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH
Q 005817 386 EDIVPSQMQKAIQVYEEALKNVPSSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE 462 (676)
Q Consensus 386 ~~~~~~~~~~A~~~ye~al~~~~~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~ 462 (676)
.++++.|...|+++++..|... +...|+.+... .|.++.|..+|++++..+|.++
T Consensus 143 ----~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~------------------~~~~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 143 ----LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG------------------GEKLQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC------------------TTHHHHHHHHHHHHHHHSCCCH
T ss_pred ----CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC------------------chHHHHHHHHHHHHHHhCCCcH
Confidence 5789999999999998877643 22223332221 3678999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
.+|...+..+...|++++|...+++++ ...|+++..|..++.+....|. ..+.+.+.+++++..-|..
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al-~~~p~~~~~l~~l~~~~~~~g~---------~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEAL-DKDSGHPETLINLVVLSQHLGK---------PPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999 8999999999999988887775 3456778899999877654
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=4.2e-10 Score=122.96 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N-GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~-~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
...+...++.+....|.+...|...+..+...+ + ..+...|++++...|.++..|...+.... ..|+++.|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 567778888888889999999999998887776 7 88999999999999999999999999886 67899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
++...|+ ..+|..++.+.... .. +
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~-----------~~-----------------------------------------~--- 186 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQL-----------QT-----------------------------------------D--- 186 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTC-----------CC-----------------------------------------S---
T ss_pred HHhhCCC-HHHHHHHHHHHHHh-----------cc-----------------------------------------C---
Confidence 9999998 45555444332110 00 0
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~ 377 (676)
......++++.|...|++|++..|++... |..+|..+...
T Consensus 187 ---~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~lg~~~~~~ 226 (474)
T 4abn_A 187 ---SGDEHSRHVMDSVRQAKLAVQMDVLDGRS-------------------------------------WYILGNAYLSL 226 (474)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------------------------------------HHHHHHHHHHH
T ss_pred ---ChhhhhhhHHHHHHHHHHHHHhCCCCHHH-------------------------------------HHHHHHHHHHH
Confidence 00011245566666666666665555444 43444333220
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccC---chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
.... ....+++++|...|+++++..| ... .|......... .|++++|...|++
T Consensus 227 ~~~~-----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~ 283 (474)
T 4abn_A 227 YFNT-----GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY------------------EESYGEALEGFSQ 283 (474)
T ss_dssp HHHT-----TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH------------------TTCHHHHHHHHHH
T ss_pred HHhh-----ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH------------------cCCHHHHHHHHHH
Confidence 0000 0003778899999999998777 332 44433333332 3678889999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~ 487 (676)
|+..+|.++..|...+.++...|++++|...+.+
T Consensus 284 al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998899888898888888888888887765443
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.24 E-value=3.1e-09 Score=105.99 Aligned_cols=224 Identities=13% Similarity=-0.059 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHhhccCc--hh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPS--SM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDI 464 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~--~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~l 464 (676)
.+++++|...|+++++..+. .. .|......... .|+++.|...|++++..+|.++..
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~ 79 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS------------------LGLRALARNDFSQALAIRPDMPEV 79 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH------------------cccHHHHHHHHHHHHHcCCCcHHH
Confidence 58899999999999987432 11 23222222221 477999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHH
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESES 544 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~ 544 (676)
|...+..+...|++++|...+++++ ...|.+...|...+.+....| +.+++.+.|++++...|......
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~a~~~~~~~~~~~ 148 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGIALYYGG----------RDKLAQDDLLAFYQDDPNDPFRS 148 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999 889999999999999888776 48999999999999877554333
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC----HHHHHH
Q 005817 545 LWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG----LVLYQN 620 (676)
Q Consensus 545 lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~----~~l~~~ 620 (676)
+|.... ......+.+...++.++... |.. .+....+......++.++|...+.+++...|.. ...+..
T Consensus 149 ~~~~~~-~~~~~~~~A~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 220 (275)
T 1xnf_A 149 LWLYLA-EQKLDEKQAKEVLKQHFEKS-DKE------QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY 220 (275)
T ss_dssp HHHHHH-HHHHCHHHHHHHHHHHHHHS-CCC------STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHhcC-Ccc------hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHH
Confidence 343322 11122234455555555432 222 222235556667788999999999998765532 457777
Q ss_pred HHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCch
Q 005817 621 CIELENNLASVGDKDSLVNARKLFESALATYDQNTS 656 (676)
Q Consensus 621 ~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~ 656 (676)
.+.+....+ +.+.|...|++++...|.+..
T Consensus 221 la~~~~~~g------~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 221 LGKYYLSLG------DLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHHHHcC------CHHHHHHHHHHHHhCCchhHH
Confidence 777777777 899999999999999885543
No 50
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.23 E-value=1.4e-09 Score=110.73 Aligned_cols=188 Identities=7% Similarity=-0.004 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817 442 HYISHLLTVYEKAEAM--GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 442 ~~~~~a~~iye~al~~--~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
+..+.|...+++.+.. +|.++.+++..+..+...|++++|+..+++ |.+...|...+.+..+.|.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~------- 145 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDR------- 145 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTC-------
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCC-------
Confidence 5578888889888875 588888888888888899999998877665 7888888888888877763
Q ss_pred hhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCH
Q 005817 520 KADILSIFELLKCILTKVSALESESLWLMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGI 597 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~ 597 (676)
.+++.+.|++++..-|......+-..++..... +.+.+..+|++++.. .|.. +.+....+....+.|++
T Consensus 146 ---~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~-----~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 146 ---LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPT-----LLLLNGQAACHMAQGRW 216 (291)
T ss_dssp ---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCC-----HHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCc-----HHHHHHHHHHHHHcCCH
Confidence 788888888888765543211221122222221 123445556666543 3332 23333455667789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhccCCCCccch-HHHHHHHHHHHhhCCCCchH
Q 005817 598 QQAREMYKRFLALPRPGLVLYQNCIELENNLASVGDKDSL-VNARKLFESALATYDQNTSL 657 (676)
Q Consensus 598 ~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~~~~~~~~~-~~aR~lye~al~~~~~~~~l 657 (676)
++|...|++++...|.+...+...+.+....| .. +.+..+++++++..|+++.+
T Consensus 217 ~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g------~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLG------KPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999998888887776776 44 45789999999999987644
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.20 E-value=1.4e-09 Score=101.94 Aligned_cols=153 Identities=11% Similarity=-0.048 Sum_probs=119.6
Q ss_pred CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH
Q 005817 344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD 422 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~ 422 (676)
+..+.|...++++++.+|+++.+|..+|..+.. .+++++|...+++++...|... .|.........
T Consensus 19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-------------IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 356778888888888888888888888887765 4678888888888888777644 34333332222
Q ss_pred HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLL 502 (676)
Q Consensus 423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (676)
.++.+.+...+++++..+|.++..|...+..+...|++++|+..+++++ +..|.++..|..
T Consensus 86 ------------------~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~ 146 (184)
T 3vtx_A 86 ------------------IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI-SIKPGFIRAYQS 146 (184)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred ------------------cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH-HhcchhhhHHHH
Confidence 2557888888888888888888888888888888899999999999988 788888888888
Q ss_pred HHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 503 RISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 503 ~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
.+......| +.+++.+.|++|++.-|
T Consensus 147 lg~~~~~~g----------~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 147 IGLAYEGKG----------LRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHTT----------CHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHCC----------CHHHHHHHHHHHHhCCc
Confidence 888887766 37888888888887654
No 52
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.18 E-value=5.1e-10 Score=97.35 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=93.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhCCCC--------H
Q 005817 87 RPSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRFKGD--------I 158 (676)
Q Consensus 87 ~~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~p~~--------~ 158 (676)
-.+.+..+|..|+.-+...+ ....| +...+++.+|+||+...|-+ +
T Consensus 8 ~~p~~yd~W~~yl~llE~~g-------------------------~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI 61 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNS-------------------------VPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFA 61 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHT-------------------------CSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcC-------------------------CCchh-hHHHHHHHHHHHHHHcCCccccccHHHHH
Confidence 45778999999999775311 01133 56789999999999999864 4
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005817 159 ELWFKYMEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (676)
Q Consensus 159 ~lW~~y~~~~~~~~~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW 229 (676)
.+|+.|+.|..-...++++.+|..|+..|..-..+|++||.||+ .+||+++||+++.+|+..+|...++.
T Consensus 62 ~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 62 RIQVRFAELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHH
Confidence 68888888854434689999999999998888999999999998 68899999999999999999875543
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=3.2e-09 Score=115.86 Aligned_cols=185 Identities=10% Similarity=-0.036 Sum_probs=139.3
Q ss_pred hh-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCc
Q 005817 308 GL-RVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSE 386 (676)
Q Consensus 308 ~~-~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~ 386 (676)
++ +.|...|++|++..|++...|..+-.++... +..+.|...++++++..|+ ..+|..+|..+..... ...
T Consensus 117 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~----~~~ 188 (474)
T 4abn_A 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK---GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQT----DSG 188 (474)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCC----SCH
T ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhcc----CCh
Confidence 55 6788888888888888877777665555443 3567888888888888888 6778888887754100 000
Q ss_pred CcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC---CcH
Q 005817 387 DIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC---LTE 462 (676)
Q Consensus 387 ~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p---~~~ 462 (676)
.+..+++++|...|+++++..|... .|..........+.....+ .+++++|...|++|+..+| .++
T Consensus 189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~----------~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN----------PKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC----------HHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc----------cchHHHHHHHHHHHHHhCCCcccCH
Confidence 1112889999999999999888654 5554444443321100100 3779999999999999999 899
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
..|...+..+...|++++|...+++++ +..|++...|.....+....+
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAA-ALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 899999999998887776654
No 54
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=1.9e-08 Score=97.67 Aligned_cols=152 Identities=5% Similarity=-0.081 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHP-KVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (676)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P-~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y 232 (676)
|.+...|...+......| +..+...|++++...| .++..|...+.... ..|+++.|...|++++...|.+..+|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 456678888888777776 5789999999999998 88888888877775 68899999999999999999887777766
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (676)
Q Consensus 233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (676)
+...... ++++.|
T Consensus 83 ~~~~~~~-------------------------------------------------------------------~~~~~A 95 (228)
T 4i17_A 83 SAAYRDM-------------------------------------------------------------------KNNQEY 95 (228)
T ss_dssp HHHHHHT-------------------------------------------------------------------TCHHHH
T ss_pred HHHHHHc-------------------------------------------------------------------ccHHHH
Confidence 6553321 256788
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHh----cccCcHHHHHHHHHHHHhcCCC--ChhhHHHHHHHh
Q 005817 313 QTIYSGAVEALPSSFNLRQRFFEIVEAT----NLAQSDDMHDKILSDMQRDFLV--DPKYWDWLARLK 374 (676)
Q Consensus 313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~f----e~~~~~~~a~~il~~~~~~~p~--~~~~w~~la~~~ 374 (676)
...|+++++..|++..++..+...+... ...+..+.+...++++++..|+ ++.+|..++..+
T Consensus 96 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 96 IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 9999999999998875543332222211 1123455666666666666666 666666666655
No 55
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.11 E-value=3.9e-06 Score=91.61 Aligned_cols=384 Identities=10% Similarity=-0.084 Sum_probs=226.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCCHHHHHHH
Q 005817 144 LEIYRLAVMRFKGDIELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARAL 214 (676)
Q Consensus 144 ~~iyeral~~~p~~~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~----~~~~~~Ar~~ 214 (676)
...++++.. +++......+..+... .+ ..++...|++++.. .++..+...+.... . .++.+.|...
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYM-NGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 344555543 6788888888877665 23 46789999999886 56888888888875 4 6799999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcc
Q 005817 215 MQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPEN 294 (676)
Q Consensus 215 ~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (676)
|++++.. .++..+..+..+... +...
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~------------g~g~---------------------------------------- 127 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHE------------GNGV---------------------------------------- 127 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHH------------TSSS----------------------------------------
T ss_pred HHHHHHC--CCHHHHHHHHHHHHc------------CCCC----------------------------------------
Confidence 9999875 355665555443221 0000
Q ss_pred hhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-cccCcHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005817 295 MESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARL 373 (676)
Q Consensus 295 ~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~ 373 (676)
.++++.|...|++|.+.. +...+..+-.++..- ......+.+...++++... .++..+..++..
T Consensus 128 -----------~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 128 -----------KVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM 192 (490)
T ss_dssp -----------CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 025567888888887752 334444444444321 1123566777888887765 567788888887
Q ss_pred hccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 374 KMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
+..+.. +.++.++|...|+++++.-+... +........... . ..++.++|...|++
T Consensus 193 y~~g~g---------~~~~~~~A~~~~~~a~~~~~~~a-~~~lg~~y~~g~---g-----------~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 193 YSRGLG---------VERNDAISAQWYRKSATSGDELG-QLHLADMYYFGI---G-----------VTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHTSS---------SCCCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHTS---S-----------SCCCHHHHHHHHHH
T ss_pred HhcCCC---------CCcCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHcCC---C-----------CCCCHHHHHHHHHH
Confidence 765311 13567888888888886532211 111111111100 0 12567888888888
Q ss_pred HHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHH
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFEL 529 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~ 529 (676)
+... .++..+...+.++.. .+++++|...+++++ .. .++..+.....+...... . . ..+.+++.+.
T Consensus 249 a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~-~~--~~~~a~~~Lg~~y~~~~~-g--~--~~~~~~A~~~ 318 (490)
T 2xm6_A 249 SAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSA-EQ--GNSDGQYYLAHLYDKGAE-G--V--AKNREQAISW 318 (490)
T ss_dssp HHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH-TT--TCHHHHHHHHHHHHHCBT-T--B--CCCHHHHHHH
T ss_pred HHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-Hc--CCHHHHHHHHHHHHcCCC-C--C--cCCHHHHHHH
Confidence 8876 346667777777777 788888888888888 43 445556665555544300 0 0 0257888888
Q ss_pred HHHHHhhcChhhhHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH----hcCHHHH
Q 005817 530 LKCILTKVSALESESLWLMALKFFMN-----QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----KDGIQQA 600 (676)
Q Consensus 530 f~~Al~~~~~~~~~~lW~~~l~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~----~g~~~~A 600 (676)
|++|+..-++. .+......+.. ..+.+...++++... .. +.....+..+... .+++++|
T Consensus 319 ~~~a~~~~~~~----a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~-----~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 319 YTKSAEQGDAT----AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GE-----KAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHTTCHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TC-----HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHhcCCHH----HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CC-----HHHHHHHHHHHHcCCCCCCCHHHH
Confidence 88888753322 12111111211 112334445554431 11 1222133444444 5788889
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhh-ccCCCCccchHHHHHHHHHHHhhCC
Q 005817 601 REMYKRFLALPRPGLVLYQNCIELENN-LASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 601 r~iy~~al~~~p~~~~l~~~~i~lE~~-~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
...|++++...+ ...+.....+... .+ ...+.+.|..+|++|++..|
T Consensus 387 ~~~~~~A~~~~~--~~a~~~Lg~~y~~g~g---~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 387 AIWMRKAAEQGL--SAAQVQLGEIYYYGLG---VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHTSS---SCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHcCCC---CCCCHHHHHHHHHHHHHCCC
Confidence 999998887543 3333333333222 21 12278889999999888874
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.09 E-value=1.4e-06 Score=95.09 Aligned_cols=353 Identities=9% Similarity=-0.025 Sum_probs=233.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCCHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQ----RK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH---NLNVTA 210 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~----~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~---~~~~~~ 210 (676)
....+...|++++.. ++...+.....+... .+ ..++...|+++... .++..+...+...... .++.+.
T Consensus 58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 357789999999976 778888888888766 33 46889999999875 5788888888887531 569999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817 211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (676)
Q Consensus 211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (676)
|...|++++.. .++..+..+..+... +...
T Consensus 134 A~~~~~~a~~~--~~~~a~~~Lg~~y~~------------g~g~------------------------------------ 163 (490)
T 2xm6_A 134 SVKWFRLAAEQ--GRDSGQQSMGDAYFE------------GDGV------------------------------------ 163 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHH------------TSSS------------------------------------
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHc------------CCCC------------------------------------
Confidence 99999999875 456666555544321 0000
Q ss_pred CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-cccCcHHHHHHHHHHHHhcCCCChhhHHH
Q 005817 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDW 369 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~a~~il~~~~~~~p~~~~~w~~ 369 (676)
.++++.|...|++|++. ++...+..+-.++..- ......+.+...+.++... .++..+..
T Consensus 164 ---------------~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 224 (490)
T 2xm6_A 164 ---------------TRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLH 224 (490)
T ss_dssp ---------------CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 02567899999999886 3445555554454431 1123577888888888764 56778888
Q ss_pred HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHH
Q 005817 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLT 449 (676)
Q Consensus 370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~ 449 (676)
++..+..+.. ..+++++|...|+++++.-+..... .......... . ..++.++|..
T Consensus 225 lg~~y~~g~g---------~~~~~~~A~~~~~~a~~~~~~~a~~-~lg~~y~~g~---~-----------~~~d~~~A~~ 280 (490)
T 2xm6_A 225 LADMYYFGIG---------VTQDYTQSRVLFSQSAEQGNSIAQF-RLGYILEQGL---A-----------GAKEPLKALE 280 (490)
T ss_dssp HHHHHHHTSS---------SCCCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTT---T-----------SSCCHHHHHH
T ss_pred HHHHHHcCCC---------CCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHCCC---C-----------CCCCHHHHHH
Confidence 8988865311 1467899999999998763322211 1111111110 0 1356899999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchH
Q 005817 450 VYEKAEAMGCLTEDIAHRYVTLYLQL-----GKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL 524 (676)
Q Consensus 450 iye~al~~~p~~~~lw~~~~~l~~~~-----~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~ 524 (676)
.|+++... .+++.+...+.++... +++++|...+++++ .. .++..+.....+....+. ..+.+
T Consensus 281 ~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~--~~~~a~~~lg~~y~~~g~-------~~~~~ 348 (490)
T 2xm6_A 281 WYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQ--GDATAQANLGAIYFRLGS-------EEEHK 348 (490)
T ss_dssp HHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHSCC-------HHHHH
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhCCC-------cccHH
Confidence 99999876 4677888888888887 89999999999999 53 445666666666654331 12578
Q ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHh------hhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHH----h
Q 005817 525 SIFELLKCILTKVSALESESLWLMALKFFMN------QKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQ----K 594 (676)
Q Consensus 525 ~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~----~ 594 (676)
++.+.|++|+..-.+ ..|......+.. ..+.+...+++|... .. +............ .
T Consensus 349 ~A~~~~~~a~~~~~~----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~---~~-----~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 349 KAVEWFRKAAAKGEK----AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ---GL-----SAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TC-----HHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC---CC-----HHHHHHHHHHHHcCCCCC
Confidence 899999999875222 223322222322 113445556665532 11 1222133444545 6
Q ss_pred cCHHHHHHHHHHHHcCCC
Q 005817 595 DGIQQAREMYKRFLALPR 612 (676)
Q Consensus 595 g~~~~Ar~iy~~al~~~p 612 (676)
++.++|...|++++...|
T Consensus 417 ~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCC
Confidence 899999999999998764
No 57
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.09 E-value=6.4e-10 Score=96.77 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=95.7
Q ss_pred CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHhcCccccccCCCCC
Q 005817 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELP 437 (676)
Q Consensus 360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~ 437 (676)
.|.+++.|..++...-+.+++. . -+-+++.+++|++|+..+|..+ .|..|+.++.......
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~------~-d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~---------- 71 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPL------S-DALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK---------- 71 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSC------C-HHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH----------
T ss_pred CCCCHHHHHHHHHHHHHcCCCc------h-hhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH----------
Confidence 5888999888887764432110 0 1456889999999999998643 5666665555432110
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 438 SHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 438 ~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
..+++++||.+|+.|+..+..-..+|+.||+|+.++|+...|++++.+|+ +.+|....+....+.-.
T Consensus 72 --ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai-G~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 72 --AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV-ERGAVPLEMLEIALRNL 138 (161)
T ss_dssp --HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBCHHHHHHHHHHH
T ss_pred --HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-ccCCCcHHHHHHHHHhh
Confidence 12568899999999988766669999999999999999999999999999 88998877766655433
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=3.1e-08 Score=96.20 Aligned_cols=211 Identities=10% Similarity=-0.026 Sum_probs=144.3
Q ss_pred CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC-chh-HHHHHHHHHHHHhcCccccccCCCCCh
Q 005817 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP-SSM-IFDLYTKFLMDMIAPKKEETRDSELPS 438 (676)
Q Consensus 361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~-~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~ 438 (676)
|.++..|...|..++. .+++++|...|+++++..| ... .|.........
T Consensus 4 ~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------------- 54 (228)
T 4i17_A 4 TTDPNQLKNEGNDALN-------------AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN---------------- 54 (228)
T ss_dssp CCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----------------
T ss_pred ccCHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----------------
Confidence 4567788888888876 5789999999999999886 433 33221111111
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH-------HHHHHHHHHHhc
Q 005817 439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL-------WLLRISVEIRCV 511 (676)
Q Consensus 439 ~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l-------W~~~i~l~~~~~ 511 (676)
.|++++|...|++++..+|.++..|...+..+...|++++|...+++++ +..|++..+ |..........+
T Consensus 55 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 55 --IKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI-KAVPGNATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp --TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence 4679999999999999999999999999999999999999999999999 889998854 555555555544
Q ss_pred cccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHH-HH
Q 005817 512 TRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAII-NL 590 (676)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~-~~ 590 (676)
+.+++.+.|++|+...|.+-....|......+.... ...++++.. +.+. ... .|. ..
T Consensus 132 ----------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~---~~~~~~a~~-~~~~-------~~~-~~~~~~ 189 (228)
T 4i17_A 132 ----------NIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG---ADVLRKATP-LASS-------NKE-KYASEK 189 (228)
T ss_dssp ----------CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH---HHHHHHHGG-GTTT-------CHH-HHHHHH
T ss_pred ----------cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH---HHHHHHHHh-cccC-------CHH-HHHHHH
Confidence 589999999999987665101234443222221111 122333221 1111 122 232 23
Q ss_pred HHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005817 591 VIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELE 625 (676)
Q Consensus 591 ~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE 625 (676)
....+.+++|...|++++...|.+.........+.
T Consensus 190 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 190 AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 44466788888888888888888777665555543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.08 E-value=5.8e-09 Score=110.25 Aligned_cols=293 Identities=8% Similarity=-0.093 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcc-CchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCC
Q 005817 139 GVARILEIYRLAVMRFKGDI----ELWFKYMEFCRQRK-NGRMKKVLAQVIRF------HPKVPGVWIYAAAWEFDHNLN 207 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~----~lW~~y~~~~~~~~-~~~~~~~~~ral~~------~P~~~~lW~~~a~~e~~~~~~ 207 (676)
....+...|++++...|.+. .+|...+......| +..+...|++++.. .|....+|...+.... ..|+
T Consensus 24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~ 102 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGN 102 (406)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HcCC
Confidence 36788999999999999984 57777777777776 57899999999887 3344667888888775 6889
Q ss_pred HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCC
Q 005817 208 VTAARALMQNGLRVCPTSE------ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281 (676)
Q Consensus 208 ~~~Ar~~~~ral~~~p~~~------~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (676)
++.|...+++++...|... .+|...+.+....++ .... . .+.....+
T Consensus 103 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~~----~-----------~~~~~~~~- 155 (406)
T 3sf4_A 103 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK-----------SFGC----P-----------GPQDVGEF- 155 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-----------TCC----------------------CCC-
T ss_pred HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC-----------cccc----c-----------ccchhhhh-
Confidence 9999999999999887421 133333322222111 0000 0 00000000
Q ss_pred CCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC---CCchh---HHHHHHHHHHHhcccCcHHHHHHHHHH
Q 005817 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL---PSSFN---LRQRFFEIVEATNLAQSDDMHDKILSD 355 (676)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~---p~~~~---~~~~~~~~~~~fe~~~~~~~a~~il~~ 355 (676)
... ....++.|...|++++... ++... .+..+..++.. .+..+.+...+++
T Consensus 156 ---------------~~~-----a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 156 ---------------PEE-----VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL---LGNFRDAVIAHEQ 212 (406)
T ss_dssp ---------------CHH-----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HTBHHHHHHHHHH
T ss_pred ---------------hhh-----HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---ccCHHHHHHHHHH
Confidence 000 0124677888888887652 22222 23222222222 2467788889998
Q ss_pred HHhcCCCChh------hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhc
Q 005817 356 MQRDFLVDPK------YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIA 425 (676)
Q Consensus 356 ~~~~~p~~~~------~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~ 425 (676)
++...|..+. ++..+|..+.. .+++++|...|++++...+... ....+...-.-..
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~- 278 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIF-------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT- 278 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH-
Confidence 8887665544 67788888765 5789999999999998654321 1111111111111
Q ss_pred CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC-----
Q 005817 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS----- 494 (676)
Q Consensus 426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P----- 494 (676)
..|++++|...|++++...+.. ...+...+.++...|++++|...+++++ ...+
T Consensus 279 --------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 343 (406)
T 3sf4_A 279 --------------LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISREVGDK 343 (406)
T ss_dssp --------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCH
T ss_pred --------------HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcCC
Confidence 2477899999999998763322 5678889999999999999999999998 5432
Q ss_pred -ChHHHHHHHHHHHHHhc
Q 005817 495 -DSVQLWLLRISVEIRCV 511 (676)
Q Consensus 495 -~~~~lW~~~i~l~~~~~ 511 (676)
.....+...+.+....|
T Consensus 344 ~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhh
Confidence 22445555555555444
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.07 E-value=3.4e-09 Score=112.75 Aligned_cols=270 Identities=8% Similarity=-0.070 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcc-CchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCCH
Q 005817 140 VARILEIYRLAVMRFKGDI----ELWFKYMEFCRQRK-NGRMKKVLAQVIRF------HPKVPGVWIYAAAWEFDHNLNV 208 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~----~lW~~y~~~~~~~~-~~~~~~~~~ral~~------~P~~~~lW~~~a~~e~~~~~~~ 208 (676)
...+...|++++...|++. .+|...+..+...| +..+...|++++.. .|....+|...+.... ..|++
T Consensus 64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 142 (411)
T 4a1s_A 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGRF 142 (411)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCH
Confidence 5788999999999999987 46777777777766 57899999999988 5666788888888876 68899
Q ss_pred HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCC
Q 005817 209 TAARALMQNGLRVCP------TSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDG 282 (676)
Q Consensus 209 ~~Ar~~~~ral~~~p------~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (676)
+.|...|++++...+ ....+|...+.+....++... ....+. +
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~~~---------------------------~-- 191 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG--QRNPGK---------------------------F-- 191 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH--HHSTTC---------------------------C--
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc--cccchh---------------------------h--
Confidence 999999999998843 223344444443332221100 000000 0
Q ss_pred CCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC---CCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHH
Q 005817 283 EVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL---PSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDM 356 (676)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~---p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~ 356 (676)
.... ...++.|...|+++++.. ++.. ..+..+..++. ..+..+.+...++++
T Consensus 192 --------------~~~a-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 192 --------------GDDV-----KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY---LLGDFQAAIEHHQER 249 (411)
T ss_dssp --------------CHHH-----HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHH
T ss_pred --------------hhhh-----hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcCChHHHHHHHHHH
Confidence 0000 124677888888887643 2211 22322222222 224677888899988
Q ss_pred HhcCCCChh------hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-------HHHHHHHHHHHH
Q 005817 357 QRDFLVDPK------YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------IFDLYTKFLMDM 423 (676)
Q Consensus 357 ~~~~p~~~~------~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-------lw~~y~~~~~~~ 423 (676)
+...|.... ++..++..+.. .+++++|...|++++...+... .+........
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-- 314 (411)
T 4a1s_A 250 LRIAREFGDRAAERRANSNLGNSHIF-------------LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT-- 314 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHH-------------CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--
Confidence 887765444 67788888765 5789999999999998655321 2222222221
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
..|++++|...|++++...+. ....+...+.++...|++++|...+++++ ...+.
T Consensus 315 ----------------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~ 375 (411)
T 4a1s_A 315 ----------------LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL-QLAXX 375 (411)
T ss_dssp ----------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCH
T ss_pred ----------------HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHhh
Confidence 147789999999999876322 24578889999999999999999999999 65554
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.07 E-value=7.5e-09 Score=105.80 Aligned_cols=136 Identities=9% Similarity=-0.065 Sum_probs=93.3
Q ss_pred hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSH 439 (676)
Q Consensus 364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~ 439 (676)
..++..++..+.. .++++.|...|+++++..+... ....+...-.-. .
T Consensus 183 ~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~---------------~ 234 (338)
T 3ro2_A 183 GRAFGNLGNTHYL-------------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY---------------I 234 (338)
T ss_dssp HHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH---------------H
Confidence 3456677777654 5789999999999998654321 111111111111 0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHHHHHH
Q 005817 440 VEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLRISVE 507 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~ 507 (676)
..|+++.|...|++++...+.. ...+...+..+...|++++|...+++++ ...|. ....|...+.+.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~la~~~ 313 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGEGRACWSLGNAY 313 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHH
Confidence 2467899999999998764332 5678889999999999999999999998 54443 245666777777
Q ss_pred HHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 508 IRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
...| +.+++.+.|++++...+
T Consensus 314 ~~~g----------~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 314 TALG----------NHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHT----------CHHHHHHHHHHHHHC--
T ss_pred HHcC----------ChHHHHHHHHHHHHHHH
Confidence 7666 47889899999987543
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.07 E-value=5.8e-09 Score=106.66 Aligned_cols=277 Identities=9% Similarity=-0.060 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcc-CchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCC
Q 005817 139 GVARILEIYRLAVMRFKGDI----ELWFKYMEFCRQRK-NGRMKKVLAQVIRF------HPKVPGVWIYAAAWEFDHNLN 207 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~----~lW~~y~~~~~~~~-~~~~~~~~~ral~~------~P~~~~lW~~~a~~e~~~~~~ 207 (676)
....+...|++++...|++. .+|...+......| +..+...|++++.. .|....+|...+.... ..|+
T Consensus 20 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 98 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGN 98 (338)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTC
T ss_pred cHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH-HccC
Confidence 36788999999999999984 56777777777766 57889999999887 4445678888888875 6889
Q ss_pred HHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCC
Q 005817 208 VTAARALMQNGLRVCPTSEE------LWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLD 281 (676)
Q Consensus 208 ~~~Ar~~~~ral~~~p~~~~------lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (676)
++.|...|++++...|.... ++...+.+.... +..... + ...
T Consensus 99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~----~-----------------~~~ 146 (338)
T 3ro2_A 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-----------GKSFGC----P-----------------GPQ 146 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHTSSS----S-----------------SCC
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-----------Cccccc----c-----------------hhh
Confidence 99999999999998764321 222222222111 100000 0 000
Q ss_pred CCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC---CCch---hHHHHHHHHHHHhcccCcHHHHHHHHHH
Q 005817 282 GEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL---PSSF---NLRQRFFEIVEATNLAQSDDMHDKILSD 355 (676)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~---p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~ 355 (676)
+. +...... ...++.|...|++++... ++.. ..+..+..++. ..+..+.+...+++
T Consensus 147 ----~~------~~~~~~a-----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 147 ----DT------GEFPEDV-----RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY---LLGNFRDAVIAHEQ 208 (338)
T ss_dssp --------------CCHHH-----HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHH
T ss_pred ----hh------hhhhhhH-----HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHH
Confidence 00 0000000 124677788888877642 2221 12222222222 22356788888888
Q ss_pred HHhcCCCChh------hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhc
Q 005817 356 MQRDFLVDPK------YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIA 425 (676)
Q Consensus 356 ~~~~~p~~~~------~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~ 425 (676)
++...|.... ++..++..+.. .+++++|...|++++...+... ....+...-.-..
T Consensus 209 a~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~- 274 (338)
T 3ro2_A 209 RLLIAKEFGDKAAERRAYSNLGNAYIF-------------LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT- 274 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-
Confidence 8776554333 67777877765 5789999999999998654321 1111111111110
Q ss_pred CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC
Q 005817 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~ 495 (676)
..|++++|...|++++...+. ....+...+..+...|++++|...+++++ ...+.
T Consensus 275 --------------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~ 335 (338)
T 3ro2_A 275 --------------LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISRE 335 (338)
T ss_dssp --------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HC---
T ss_pred --------------HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHh
Confidence 147789999999999876332 24578889999999999999999999999 65543
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.06 E-value=8.5e-09 Score=108.99 Aligned_cols=271 Identities=7% Similarity=-0.110 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---H--
Q 005817 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP----GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS---E-- 226 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~----~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~---~-- 226 (676)
....|...+..+...| +..+...|++++...|.++ .+|...+.... ..|+++.|...|++++...+.. +
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4555666666666666 5789999999999999985 57777787776 6889999999999998774321 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHH
Q 005817 227 -ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFR 305 (676)
Q Consensus 227 -~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (676)
.+|...+.... .
T Consensus 87 ~~~~~~la~~~~-------------------------------------------------------------------~ 99 (406)
T 3sf4_A 87 AKASGNLGNTLK-------------------------------------------------------------------V 99 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------------------------------------------H
T ss_pred HHHHHHHHHHHH-------------------------------------------------------------------H
Confidence 12221111111 0
Q ss_pred HhhhHHHHHHHHHHHhcCCCch------hHHHHHHHHHHHhcccCc--------------------HHHHHHHHHHHHhc
Q 005817 306 EQGLRVLQTIYSGAVEALPSSF------NLRQRFFEIVEATNLAQS--------------------DDMHDKILSDMQRD 359 (676)
Q Consensus 306 ~~~~~~a~~iy~~Al~~~p~~~------~~~~~~~~~~~~fe~~~~--------------------~~~a~~il~~~~~~ 359 (676)
.++++.|...|+++++..|... ..+..+-.++... +. .+.+...+.+++..
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK---GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc---CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 1345667777777776543321 1222222222211 12 45666666666554
Q ss_pred C------CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccc
Q 005817 360 F------LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKE 429 (676)
Q Consensus 360 ~------p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~ 429 (676)
. |....++..+|..+.. .++++.|...|+++++..+... ....|...-.-..
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----- 238 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYL-------------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI----- 238 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-------------HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----
T ss_pred HHhccCcHHHHHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-----
Confidence 2 2224467777877765 5789999999999998654321 1112222111111
Q ss_pred cccCCCCChhhhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hH
Q 005817 430 ETRDSELPSHVEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SV 497 (676)
Q Consensus 430 d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~ 497 (676)
..|++++|...|++++...+.. ...+...+..+...|++++|...+++++ ...|. ..
T Consensus 239 ----------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 239 ----------FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELNDRIGEG 307 (406)
T ss_dssp ----------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHH
T ss_pred ----------HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHhcCCcHHHH
Confidence 1477899999999998764433 5678889999999999999999999998 54332 25
Q ss_pred HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 498 QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 498 ~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
..|...+.+....| +.+++.+.|++|+...
T Consensus 308 ~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 308 RACWSLGNAYTALG----------NHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHH
Confidence 67777777777666 4789999999998753
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.06 E-value=2.7e-09 Score=113.53 Aligned_cols=268 Identities=7% Similarity=-0.098 Sum_probs=173.1
Q ss_pred HHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCHHHH
Q 005817 161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP----GVWIYAAAWEFDHNLNVTAARALMQNGLRVC------PTSEELW 229 (676)
Q Consensus 161 W~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~----~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~------p~~~~lW 229 (676)
+...+..+...| +..+...|++++...|.++ .+|...+.... ..|+++.|...|++++... |....+|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334444444555 5789999999999999987 47777887775 6789999999999999873 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhh
Q 005817 230 VEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGL 309 (676)
Q Consensus 230 ~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (676)
...+.+... .+++
T Consensus 130 ~~l~~~~~~-------------------------------------------------------------------~g~~ 142 (411)
T 4a1s_A 130 GNLGNTLKV-------------------------------------------------------------------MGRF 142 (411)
T ss_dssp HHHHHHHHH-------------------------------------------------------------------TTCH
T ss_pred HHHHHHHHH-------------------------------------------------------------------CCCH
Confidence 222222111 1245
Q ss_pred HHHHHHHHHHHhcC------CCchhHHHHHHHHHHHhcccCc-----------------HHHHHHHHHHHHhcC------
Q 005817 310 RVLQTIYSGAVEAL------PSSFNLRQRFFEIVEATNLAQS-----------------DDMHDKILSDMQRDF------ 360 (676)
Q Consensus 310 ~~a~~iy~~Al~~~------p~~~~~~~~~~~~~~~fe~~~~-----------------~~~a~~il~~~~~~~------ 360 (676)
+.|...|+++++.. |.....+..+..++... +. .+.+...+.+++...
T Consensus 143 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK---GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc---CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 66666777766552 22222333322222221 12 455666666655433
Q ss_pred CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHH--HHHHHHHHHhcCccccccCCCC
Q 005817 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFD--LYTKFLMDMIAPKKEETRDSEL 436 (676)
Q Consensus 361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~--~y~~~~~~~~~~~~~d~~~~~~ 436 (676)
|....++..+|..+.. .+++++|...|+++++..+... .+. .|...-.-..
T Consensus 220 ~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~------------ 274 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYL-------------LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI------------ 274 (411)
T ss_dssp HHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH------------
Confidence 2224467778887765 5789999999999998765321 111 1111111111
Q ss_pred ChhhhhhHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHHH
Q 005817 437 PSHVEHYISHLLTVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLRI 504 (676)
Q Consensus 437 ~~~~~~~~~~a~~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i 504 (676)
..|+++.|...|++++...+.. ...+...+.++...|++++|...+++++ ...+. ....+...+
T Consensus 275 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la 350 (411)
T 4a1s_A 275 ---FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL-AIAQELGDRIGEARACWSLG 350 (411)
T ss_dssp ---TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHH
T ss_pred ---HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHCCChHHHHHHHHHHH
Confidence 1477899999999999874432 5678889999999999999999999999 65443 245666667
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
.++...| +.+++.+.|++|+...+
T Consensus 351 ~~~~~~g----------~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 351 NAHSAIG----------GHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHTT----------CHHHHHHHHHHHHHHCC
T ss_pred HHHHHhc----------cHHHHHHHHHHHHHHHh
Confidence 7776666 47899999999998765
No 65
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=9.3e-08 Score=97.17 Aligned_cols=245 Identities=11% Similarity=0.074 Sum_probs=180.2
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL--NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVAL 250 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~--~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l 250 (676)
..++..+++++|.++|.+..+|..-..... ..+ .++.+...++++|..+|.+..+|..-..+....... +
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-------l 120 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-------N 120 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-------T
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-------c
Confidence 368999999999999999999999888775 566 999999999999999999999998876544221100 0
Q ss_pred ccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHH
Q 005817 251 GEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLR 330 (676)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~ 330 (676)
+. .++++.+..+++++++..|.+...|
T Consensus 121 ~~-----------------------------------------------------~~~~~~EL~~~~~~l~~~pkny~aW 147 (306)
T 3dra_A 121 NN-----------------------------------------------------DFDPYREFDILEAMLSSDPKNHHVW 147 (306)
T ss_dssp TT-----------------------------------------------------CCCTHHHHHHHHHHHHHCTTCHHHH
T ss_pred cc-----------------------------------------------------cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 00 0134567889999999999999888
Q ss_pred HHHHHHHHHhcccCcHH--HHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccC
Q 005817 331 QRFFEIVEATNLAQSDD--MHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP 408 (676)
Q Consensus 331 ~~~~~~~~~fe~~~~~~--~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~ 408 (676)
..---++..++ ..+ .+...+++++..+|.+..+|...+......... .....++++.+.+++++...|
T Consensus 148 ~~R~~vl~~l~---~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~-------~~~~~~~eEl~~~~~aI~~~p 217 (306)
T 3dra_A 148 SYRKWLVDTFD---LHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL-------ATDNTIDEELNYVKDKIVKCP 217 (306)
T ss_dssp HHHHHHHHHTT---CTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG-------CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhc---ccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc-------chhhhHHHHHHHHHHHHHhCC
Confidence 76544444443 233 677789999999999999998877665331000 002348899999999999988
Q ss_pred chh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 005817 409 SSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---CLTEDIAHRYVTLYLQLGKLDEARKL 484 (676)
Q Consensus 409 ~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~---p~~~~lw~~~~~l~~~~~~~~~A~~l 484 (676)
.+. .|. |..+...... ...+.+...+++++..+ |.++..+...++.+.+.|+.++|.++
T Consensus 218 ~n~SaW~-y~~~ll~~~~----------------~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 218 QNPSTWN-YLLGIHERFD----------------RSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp SCHHHHH-HHHHHHHHTT----------------CCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCccHHH-HHHHHHHhcC----------------CChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 765 775 4455554321 11233444555554443 77888888899999999999999999
Q ss_pred HHHHhhccCCChHHHHHHHHH
Q 005817 485 AAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 485 ~~~al~~~~P~~~~lW~~~i~ 505 (676)
++.+..+..|-....|.-++.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999984468989999987654
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.99 E-value=6.7e-09 Score=118.49 Aligned_cols=168 Identities=9% Similarity=0.018 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005817 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEY 232 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y 232 (676)
.|++.+.|..++..+.+.| .+.|...|++|++.+|+++..|...+.... ..|+++.|...|++|++.+|++..+|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5777888888888888877 578888999999999998888888888875 67889999999999999999888877766
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHH
Q 005817 233 LRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVL 312 (676)
Q Consensus 233 ~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (676)
+...... ++++.|
T Consensus 84 g~~l~~~-------------------------------------------------------------------g~~~~A 96 (723)
T 4gyw_A 84 GNTLKEM-------------------------------------------------------------------QDVQGA 96 (723)
T ss_dssp HHHHHHT-------------------------------------------------------------------TCHHHH
T ss_pred HHHHHHc-------------------------------------------------------------------CCHHHH
Confidence 6543321 255778
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhH
Q 005817 313 QTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQ 392 (676)
Q Consensus 313 ~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~ 392 (676)
...|++|++..|++.+.+..+-.++... +..+.|...++++++..|+++.+|..++..+.. .++
T Consensus 97 ~~~~~kAl~l~P~~~~a~~~Lg~~~~~~---g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~-------------~g~ 160 (723)
T 4gyw_A 97 LQCYTRAIQINPAFADAHSNLASIHKDS---GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI-------------VCD 160 (723)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------------TTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh-------------ccc
Confidence 8888889888888877777766555443 356788888888888899988888888887755 344
Q ss_pred HHHHHHHHHHHhh
Q 005817 393 MQKAIQVYEEALK 405 (676)
Q Consensus 393 ~~~A~~~ye~al~ 405 (676)
++.|.+.|+++++
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=1.8e-07 Score=93.41 Aligned_cols=251 Identities=12% Similarity=-0.037 Sum_probs=177.6
Q ss_pred CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHH
Q 005817 154 FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDH----NLNVTAARALMQNGLRVCPTSEEL 228 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~----~~~~~~Ar~~~~ral~~~p~~~~l 228 (676)
.|++...|......+...+ ...+...|++++. |.++..|...+.... . .++++.|...|++++... +...
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 4778888888888887776 5789999999999 788899999888875 6 789999999999999875 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhh
Q 005817 229 WVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQG 308 (676)
Q Consensus 229 W~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (676)
|..+..+.... ... .++
T Consensus 77 ~~~lg~~~~~g------------~~~---------------------------------------------------~~~ 93 (273)
T 1ouv_A 77 CHLLGNLYYSG------------QGV---------------------------------------------------SQN 93 (273)
T ss_dssp HHHHHHHHHHT------------SSS---------------------------------------------------CCC
T ss_pred HHHHHHHHhCC------------CCc---------------------------------------------------ccC
Confidence 66655543220 000 025
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHh-cccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 309 LRVLQTIYSGAVEALPSSFNLRQRFFEIVEAT-NLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 309 ~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~f-e~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
++.|...|++|++.. +...+..+-.++..- ...+..+.+...++++++.. ++..+..++..+..+..
T Consensus 94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~-------- 161 (273)
T 1ouv_A 94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRG-------- 161 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS--------
T ss_pred HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCC--------
Confidence 678899999999863 445555554444431 01245778889999988864 67778888888765211
Q ss_pred cchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
..+++++|...|+++++..+. ..+........... . ..+++++|...|++++..+| +..+..
T Consensus 162 -~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~g~---~-----------~~~~~~~A~~~~~~a~~~~~--~~a~~~ 223 (273)
T 1ouv_A 162 -TPKDLKKALASYDKACDLKDS-PGCFNAGNMYHHGE---G-----------ATKNFKEALARYSKACELEN--GGGCFN 223 (273)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTC---S-----------SCCCHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCC---C-----------CCccHHHHHHHHHHHHhCCC--HHHHHH
Confidence 146789999999999976332 22222222222210 0 13678999999999999866 778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817 468 YVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (676)
Q Consensus 468 ~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (676)
.+.++.. .+++++|...+++++ ...|.+...+...
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKGACDILKQ 262 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 9999998 899999999999999 7778776666543
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.95 E-value=1.4e-08 Score=115.81 Aligned_cols=169 Identities=13% Similarity=0.072 Sum_probs=127.3
Q ss_pred CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (676)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~ 402 (676)
.|++.+.+..+-.++... +..+.|...++++++..|++..+|..+|..+.. .+++++|...|++
T Consensus 5 ~P~~a~al~nLG~~~~~~---G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-------------~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQ---GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-------------QGKLQEALMHYKE 68 (723)
T ss_dssp -CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHH
Confidence 455555555554444332 357788888888888889888888888888765 5778899999999
Q ss_pred HhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHH
Q 005817 403 ALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEA 481 (676)
Q Consensus 403 al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A 481 (676)
|++..|... .|......... .|+++.|+..|++|+..+|.+.+.|...+..+...|++++|
T Consensus 69 Al~l~P~~~~a~~nLg~~l~~------------------~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA 130 (723)
T 4gyw_A 69 AIRISPTFADAYSNMGNTLKE------------------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130 (723)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 988877643 33333222222 36788899999999998899999999999999999999999
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 482 RKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 482 ~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+..|++|+ +..|++...|..++.+....++ .+++.+.|++++..
T Consensus 131 i~~~~~Al-~l~P~~~~a~~~L~~~l~~~g~----------~~~A~~~~~kal~l 174 (723)
T 4gyw_A 131 IASYRTAL-KLKPDFPDAYCNLAHCLQIVCD----------WTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHH-HHCSCCHHHHHHHHHHHHHTTC----------CTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HhCCCChHHHhhhhhHHHhccc----------HHHHHHHHHHHHHh
Confidence 99999999 8889998888888888877653 56666667777654
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=1.5e-07 Score=93.57 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCL---TEDIAHRYVTLYLQL----------GKLDEARKLAAKLCSGKLSDSVQLWLL 502 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~---~~~lw~~~~~l~~~~----------~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (676)
.|+++.|...|++++...|. .++.+...+..+... |++++|...+++++ ..+|+++.....
T Consensus 161 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a 234 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL-QIFPDSPLLRTA 234 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH-HHCTTCTHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH-HHCCCChHHHHH
Confidence 36688888899998888777 466777877777765 88899999999999 889988644433
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.91 E-value=5e-08 Score=90.30 Aligned_cols=167 Identities=13% Similarity=-0.031 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 159 ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 159 ~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
..|...+......| ...+...|++++...|.++..|...+.... ..|+++.|...+++++...|.+..+|..++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45555555555555 478889999999999999999988888876 6789999999999999999988877766655433
Q ss_pred HHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHH
Q 005817 238 TYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYS 317 (676)
Q Consensus 238 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~ 317 (676)
.. ++++.|...|+
T Consensus 88 ~~-------------------------------------------------------------------~~~~~A~~~~~ 100 (186)
T 3as5_A 88 QV-------------------------------------------------------------------QKYDLAVPLLI 100 (186)
T ss_dssp HH-------------------------------------------------------------------TCHHHHHHHHH
T ss_pred Hh-------------------------------------------------------------------cCHHHHHHHHH
Confidence 21 25567888899
Q ss_pred HHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHH
Q 005817 318 GAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAI 397 (676)
Q Consensus 318 ~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~ 397 (676)
+++...|++...+..+..++... +..+.+...+++++...|+++.+|..+|..+.. .+++++|.
T Consensus 101 ~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~ 164 (186)
T 3as5_A 101 KVAEANPINFNVRFRLGVALDNL---GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ-------------MGRHEEAL 164 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCHHHHH
T ss_pred HHHhcCcHhHHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-------------cCCHHHHH
Confidence 99988888877776655554432 356788889999999999999999999888865 47789999
Q ss_pred HHHHHHhhccCc
Q 005817 398 QVYEEALKNVPS 409 (676)
Q Consensus 398 ~~ye~al~~~~~ 409 (676)
..|+++++..|+
T Consensus 165 ~~~~~~~~~~~~ 176 (186)
T 3as5_A 165 PHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHcCCC
Confidence 999999876654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.90 E-value=8.6e-09 Score=104.56 Aligned_cols=248 Identities=10% Similarity=0.026 Sum_probs=157.0
Q ss_pred hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-
Q 005817 153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRF--------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC- 222 (676)
Q Consensus 153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~--------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~- 222 (676)
..|.....|...+......| ...+...|++++.. .|....+|...+.... ..|+++.|...|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHH
Confidence 35667778888888877777 57899999999995 6667788888888886 6889999999999999874
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 223 ----PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 223 ----p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
++++.....+..+-..+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~----------------------------------------------------------- 121 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLY----------------------------------------------------------- 121 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred HHhCCCChHHHHHHHHHHHHH-----------------------------------------------------------
Confidence 33333222222221111
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcC-----CCc---hhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhc--------CCC
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEAL-----PSS---FNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD--------FLV 362 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~-----p~~---~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~--------~p~ 362 (676)
+..++++.|...|+++++.. ++. ...+..+..++ ...+..+.+...+++++.. .|.
T Consensus 122 -----~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 193 (311)
T 3nf1_A 122 -----GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC---QNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193 (311)
T ss_dssp -----HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred -----HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 00135667788888887653 222 23333332222 2224577888888888776 455
Q ss_pred ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---------h-hHHHHHHHHHHHHhcCcccccc
Q 005817 363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---------S-MIFDLYTKFLMDMIAPKKEETR 432 (676)
Q Consensus 363 ~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---------~-~lw~~y~~~~~~~~~~~~~d~~ 432 (676)
...++..+|..+.. .+++++|...|+++++..+. . .+|......... ... .
T Consensus 194 ~~~~~~~la~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~---- 254 (311)
T 3nf1_A 194 VAKTKNNLASCYLK-------------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC-KGK-Q---- 254 (311)
T ss_dssp HHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh-cCc-h----
Confidence 56678888888865 57899999999999975322 1 133222211110 000 0
Q ss_pred CCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC
Q 005817 433 DSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS 494 (676)
Q Consensus 433 ~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P 494 (676)
...+.+..+...++++...+|.....|...+.++...|++++|...+++++ +..|
T Consensus 255 ------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~~ 309 (311)
T 3nf1_A 255 ------KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM-RSRK 309 (311)
T ss_dssp ---------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHC
T ss_pred ------hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhh
Confidence 011234456667778777778888999999999999999999999999998 5544
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=1.9e-07 Score=92.73 Aligned_cols=201 Identities=10% Similarity=0.051 Sum_probs=140.1
Q ss_pred HHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH
Q 005817 151 VMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSE 226 (676)
Q Consensus 151 l~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~ 226 (676)
....|.+...+...+......| +..+...|++++..+|.+ +..|...+...+ ..|+++.|...|++++...|+++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCc
Confidence 3457888888888888887777 589999999999999998 899999999886 68899999999999999999775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHH
Q 005817 227 ELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFRE 306 (676)
Q Consensus 227 ~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (676)
..-..+..+-..+.. .+. .... ..
T Consensus 87 ~~~~a~~~lg~~~~~--------~~~----------------------~~~~--------------------------~~ 110 (261)
T 3qky_A 87 RVPQAEYERAMCYYK--------LSP----------------------PYEL--------------------------DQ 110 (261)
T ss_dssp THHHHHHHHHHHHHH--------HCC----------------------CTTS--------------------------CC
T ss_pred hhHHHHHHHHHHHHH--------hcc----------------------cccc--------------------------cc
Confidence 433333332221100 000 0000 01
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHHHH--------------HHHHHHhcccCcHHHHHHHHHHHHhcCCCC---hhhHHH
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQRF--------------FEIVEATNLAQSDDMHDKILSDMQRDFLVD---PKYWDW 369 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~~~--------------~~~~~~fe~~~~~~~a~~il~~~~~~~p~~---~~~w~~ 369 (676)
++++.|...|+++++..|++...+... +.+...+...+..+.+...+++++..+|++ +.++..
T Consensus 111 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 111 TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 477889999999999999876555332 222222222346789999999999999995 457888
Q ss_pred HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh
Q 005817 370 LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM 411 (676)
Q Consensus 370 la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~ 411 (676)
++..+...+.... .....+++++|...|+++++..|...
T Consensus 191 l~~~~~~~g~~~~---~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 191 AMRAYIAYAEQSV---RARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHTSC---GGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHhcccch---hhcccchHHHHHHHHHHHHHHCCCCh
Confidence 8887754210000 00013789999999999999988754
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=1.5e-06 Score=86.75 Aligned_cols=247 Identities=11% Similarity=0.011 Sum_probs=170.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhH
Q 005817 187 HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADE 266 (676)
Q Consensus 187 ~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 266 (676)
.|.++..+...+.... ..|+++.|...|++++. |.+...|..+..+.... ...
T Consensus 2 ~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g------------~~~------------ 54 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSY-KEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQG------------QGV------------ 54 (273)
T ss_dssp ---CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHT------------SSS------------
T ss_pred CCCChHHHHHHHHHHH-hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcC------------CCc------------
Confidence 4788999999999886 67899999999999999 66677666655443220 000
Q ss_pred HhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-hcccCc
Q 005817 267 KRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEA-TNLAQS 345 (676)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~-fe~~~~ 345 (676)
.++++.|...|++|++.. +...+..+-.++.. ....+.
T Consensus 55 ---------------------------------------~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~ 93 (273)
T 1ouv_A 55 ---------------------------------------EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN 93 (273)
T ss_dssp ---------------------------------------CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred ---------------------------------------CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC
Confidence 025678999999999874 44555555444433 011246
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhc
Q 005817 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIA 425 (676)
Q Consensus 346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~ 425 (676)
.+.+...+++++.. +++..+..++..+..+.. ..+++++|...|+++++..+. ..+...........
T Consensus 94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~---------~~~~~~~A~~~~~~a~~~~~~-~a~~~lg~~~~~~~- 160 (273)
T 1ouv_A 94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKV---------VTRDFKKAVEYFTKACDLNDG-DGCTILGSLYDAGR- 160 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS---------SCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCC---------cccCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHcCC-
Confidence 77888999998886 478889999998865211 146789999999999986432 22222222222110
Q ss_pred CccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 426 PKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 426 ~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
. ..+++++|...|++++..+ ++..+...+.++.. .+++++|...+++++ ...| +..+.
T Consensus 161 --~-----------~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~--~~a~~ 222 (273)
T 1ouv_A 161 --G-----------TPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC-ELEN--GGGCF 222 (273)
T ss_dssp --S-----------SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH-HTTC--HHHHH
T ss_pred --C-----------CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-hCCC--HHHHH
Confidence 0 1366899999999999874 57888999999999 999999999999999 6544 56666
Q ss_pred HHHHHHHHh-ccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817 502 LRISVEIRC-VTRNSFSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 502 ~~i~l~~~~-~~~~~~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
....+.... +. ..+.+++.+.|++|+..-|.
T Consensus 223 ~l~~~~~~g~~~-------~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 223 NLGAMQYNGEGV-------TRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTTSSS-------SCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCc-------ccCHHHHHHHHHHHHHcCCH
Confidence 666666541 10 02578899999999987654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.85 E-value=9.3e-08 Score=88.44 Aligned_cols=152 Identities=10% Similarity=0.005 Sum_probs=120.4
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM 423 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~ 423 (676)
..+.+...+++++...|+++.+|..++..+.. .+++++|...|+++++..|... .|.........
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~- 88 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-------------TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ- 88 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Confidence 45677788888888888888888888887765 4678899999999988777543 44443333332
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLR 503 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (676)
.++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...
T Consensus 89 -----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l 150 (186)
T 3as5_A 89 -----------------VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL-GLRPNEGKVHRAI 150 (186)
T ss_dssp -----------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred -----------------hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH-hcCccchHHHHHH
Confidence 3668899999999999889899999999999999999999999999999 7888888888888
Q ss_pred HHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 504 i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
+.+....| +.+++.+.|++++...|
T Consensus 151 a~~~~~~~----------~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 151 AFSYEQMG----------RHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC----------CHHHHHHHHHHHHHcCC
Confidence 88887765 47888888888876543
No 75
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.1e-08 Score=92.72 Aligned_cols=131 Identities=8% Similarity=-0.008 Sum_probs=102.7
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcc
Q 005817 350 DKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKK 428 (676)
Q Consensus 350 ~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~ 428 (676)
...+..++...|+++..+..+|..+.. .+++++|+..|+++++..|... .|.........
T Consensus 17 i~~~~~a~~~~p~~~~~~~~la~~y~~-------------~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~------ 77 (150)
T 4ga2_A 17 IASVQGSTPSPRQKSIKGFYFAKLYYE-------------AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL------ 77 (150)
T ss_dssp HHHHHHHSCSHHHHHTTHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHhcccCcccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------
Confidence 333444444445555667778888776 5789999999999999988754 55444433333
Q ss_pred ccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhccCCChHHHHHHHHHHH
Q 005817 429 EETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKL-AAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 429 ~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l-~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
.|+++.|...|++++..+|.+++.|...+.++.+.|++++|... +++|+ +..|+++.+|..+..+.
T Consensus 78 ------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al-~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 78 ------------EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA-KLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp ------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH-HHSTTCHHHHHHHHHHH
T ss_pred ------------cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HhCcCCHHHHHHHHHHH
Confidence 37799999999999999999999999999999999998776554 69999 89999999999988888
Q ss_pred HHhcc
Q 005817 508 IRCVT 512 (676)
Q Consensus 508 ~~~~~ 512 (676)
...|+
T Consensus 145 ~~~G~ 149 (150)
T 4ga2_A 145 DCEGE 149 (150)
T ss_dssp HTCCC
T ss_pred HHhCc
Confidence 76653
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.7e-07 Score=94.80 Aligned_cols=170 Identities=12% Similarity=-0.067 Sum_probs=134.0
Q ss_pred CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHH
Q 005817 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEE 402 (676)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~ 402 (676)
.|++.+.+......+.. .+..+.+...+++++...|+++.++..+|..++. .+++++|...|++
T Consensus 113 lp~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-------------~g~~~~A~~~l~~ 176 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQ---ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-------------LNRSEDAEAVLXT 176 (287)
T ss_dssp SCCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-------------TTCHHHHHHHHTT
T ss_pred cCCchhhHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-------------CCCHHHHHHHHHh
Confidence 47766655544333322 2467899999999999999999999999999876 5889999999999
Q ss_pred HhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 005817 403 ALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEAR 482 (676)
Q Consensus 403 al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~ 482 (676)
++...|....+.......... .+....+...|++++..+|.+++.+..++..+...|++++|.
T Consensus 177 ~~~~~p~~~~~~~~~~~~l~~-----------------~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 177 IPLQDQDTRYQGLVAQIELLX-----------------QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp SCGGGCSHHHHHHHHHHHHHH-----------------HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CchhhcchHHHHHHHHHHHHh-----------------hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence 998888544332222222211 233456888999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCh--HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 483 KLAAKLCSGKLSDS--VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 483 ~l~~~al~~~~P~~--~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
..+.+++ +..|++ ...|...+.+....|. .+++...|.+++..
T Consensus 240 ~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~----------~~~a~~~~r~al~~ 284 (287)
T 3qou_A 240 ELLFGHL-RXDLTAADGQTRXTFQEILAALGT----------GDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCT----------TCHHHHHHHHHHHH
T ss_pred HHHHHHH-hcccccccchHHHHHHHHHHHcCC----------CCcHHHHHHHHHHH
Confidence 9999999 889987 8899999998887764 56677778888753
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.80 E-value=3.3e-08 Score=100.15 Aligned_cols=242 Identities=8% Similarity=-0.082 Sum_probs=145.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 005817 187 HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC--------PTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLV 258 (676)
Q Consensus 187 ~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~--------p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~ 258 (676)
+|.....|...+.... ..|+++.|..+|++++... |....+|...+.....
T Consensus 23 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-------------------- 81 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYA-SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-------------------- 81 (311)
T ss_dssp SCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH--------------------
T ss_pred chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH--------------------
Confidence 5666788888888886 6889999999999999862 2222333333322211
Q ss_pred ccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcC-----CCchhHHHHH
Q 005817 259 RDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEAL-----PSSFNLRQRF 333 (676)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~-----p~~~~~~~~~ 333 (676)
.++++.|...|++++... ++.......+
T Consensus 82 -----------------------------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 82 -----------------------------------------------QNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp -----------------------------------------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 135567777888877653 2222222222
Q ss_pred HHHHHHhcccCcHHHHHHHHHHHHhcC--------CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhh
Q 005817 334 FEIVEATNLAQSDDMHDKILSDMQRDF--------LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALK 405 (676)
Q Consensus 334 ~~~~~~fe~~~~~~~a~~il~~~~~~~--------p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~ 405 (676)
..+...+...+..+.+...+++++... |....++..+|..+.. .+++++|...|+++++
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-------------~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-------------QGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHH
Confidence 222222222346778888888887764 4445668888888865 5789999999999998
Q ss_pred cc-----C-chh---HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC---------CCcHHHHHH
Q 005817 406 NV-----P-SSM---IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG---------CLTEDIAHR 467 (676)
Q Consensus 406 ~~-----~-~~~---lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~---------p~~~~lw~~ 467 (676)
.. + ... .+......... .|++++|...|++++... +....+|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLK------------------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 62 1 111 22222222222 477899999999998642 222334444
Q ss_pred HHHHH------HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 468 YVTLY------LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 468 ~~~l~------~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
...+. ...+.+.+|...+.+++ ...|....+|...+.+....| +.+++.+.|++|+...|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACK-VDSPTVTTTLKNLGALYRRQG----------KFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHhh
Confidence 44333 33344555666777777 677888999999999888876 47899999999987543
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=5.4e-08 Score=111.12 Aligned_cols=168 Identities=9% Similarity=-0.073 Sum_probs=139.5
Q ss_pred HhhhHHHHHHHHHHH--------hcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817 306 EQGLRVLQTIYSGAV--------EALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (676)
Q Consensus 306 ~~~~~~a~~iy~~Al--------~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~ 377 (676)
.++++.|...|++++ +..|++.+.+......+... +..+.|...++++++..|+++.+|..+|..+..
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 479 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL---GDVAKATRKLDDLAERVGWRWRLVWYRAVAELL- 479 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc---CCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence 457889999999999 77898888777665555443 367899999999999999999999999998876
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHH
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEA 456 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~ 456 (676)
.+++++|...|+++++..|... .|......... .|+++. ...|++|+.
T Consensus 480 ------------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~------------------~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 480 ------------TGDYDSATKHFTEVLDTFPGELAPKLALAATAEL------------------AGNTDE-HKFYQTVWS 528 (681)
T ss_dssp ------------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH------------------HTCCCT-TCHHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCChHH-HHHHHHHHH
Confidence 5889999999999999988754 44433333333 355677 889999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR 509 (676)
Q Consensus 457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~ 509 (676)
.+|.++..|...+..+...|++++|+..|++++ +..|++...|..++.....
T Consensus 529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSAEGDRVGAVRTLDEVP-PTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-TTSTTHHHHHHHHHHHTC-
T ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc-ccCcccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999 8999999999888776644
No 79
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.78 E-value=0.00011 Score=86.78 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~ 541 (676)
..-|..+++.+...|++++|...|.++- -|...+..+.+.|+ ++.+.+.+.+|..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge----------~q~AIEaarKA~n------ 1249 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE----------YQAAVDGARKANS------ 1249 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCC----------HHHHHHHHHHhCC------
Confidence 3456679999999999999999998863 68888888877763 7888777777722
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005817 542 SESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNC 621 (676)
Q Consensus 542 ~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~ 621 (676)
...|.....-.... ..++.+..-.+. +. . .++-....+.++...|.+++|..++++++.+.+....+|..+
T Consensus 1250 -~~aWkev~~acve~-~Ef~LA~~cgl~-Ii--v----~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1250 -TRTWKEVCFACVDG-KEFRLAQMCGLH-IV--V----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred -HHHHHHHHHHHhhh-hHHHHHHHHHHh-hh--c----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 34676432211111 222222221111 10 0 122233567778889999999999999999998888899777
Q ss_pred HHHHhhccCCCCccchHHHHHHHHHHHhhCC-----CCchHHHHHHHHHhhcCCcc
Q 005817 622 IELENNLASVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 622 i~lE~~~~~~~~~~~~~~aR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~ 672 (676)
..+..+..+ +.+...-++|+..++..+ .+..+|..+.-+=.++|+.+
T Consensus 1321 aiLyaKy~p----eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1321 AILYSKFKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred HHHHHhCCH----HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 777655442 267788889999888766 56689999988888888765
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=3.1e-07 Score=87.97 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHhhccCchh
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM 411 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~ 411 (676)
.+++++|+..|+++++..|+..
T Consensus 170 ~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 170 TTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHTHHHHHHHHHHHTTTSCCHH
T ss_pred ccCHHHHHHHHHHHHHhCCCHH
Confidence 4677888888888888878644
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.73 E-value=9.4e-08 Score=109.12 Aligned_cols=165 Identities=10% Similarity=-0.054 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHH
Q 005817 140 VARILEIYRLAV--------MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTA 210 (676)
Q Consensus 140 ~~~~~~iyeral--------~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~ 210 (676)
...|...|++++ ...|++...|...+..+...| ++.+...|++++..+|+++.+|...+.... ..|+++.
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~ 485 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDS 485 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHH
Confidence 567899999999 999999999999999888877 588999999999999999999999999886 6789999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817 211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (676)
Q Consensus 211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (676)
|...|+++++.+|++..+|..++......
T Consensus 486 A~~~~~~al~l~P~~~~~~~~lg~~~~~~--------------------------------------------------- 514 (681)
T 2pzi_A 486 ATKHFTEVLDTFPGELAPKLALAATAELA--------------------------------------------------- 514 (681)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHc---------------------------------------------------
Confidence 99999999999999999888776654321
Q ss_pred CCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHH
Q 005817 291 QPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWL 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~l 370 (676)
++++. ...|++|++..|++...+..+-.++... +..+.|...++++++..|++..+|..+
T Consensus 515 ----------------g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 515 ----------------GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE---GDRVGAVRTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp ----------------TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHTSCTTSTTHHHHHHHH
T ss_pred ----------------CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc---CCHHHHHHHHHhhcccCcccHHHHHHH
Confidence 13345 6788999999999988887766655443 367899999999999999999999999
Q ss_pred HHHhcc
Q 005817 371 ARLKMT 376 (676)
Q Consensus 371 a~~~~~ 376 (676)
+..++.
T Consensus 575 ~~~~~~ 580 (681)
T 2pzi_A 575 AVTLLS 580 (681)
T ss_dssp HHHTC-
T ss_pred HHHHHc
Confidence 998865
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=2e-07 Score=84.27 Aligned_cols=129 Identities=6% Similarity=-0.094 Sum_probs=102.5
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
.+++++|+..|++++...|... .|......... .|++++|...|++++..+|.++..|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~------------------~~~~~~A~~~~~~al~~~p~~~~a~~~l 71 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE------------------AKEYDLAKKYICTYINVQERDPKAHRFL 71 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5889999999999998766543 33333333322 4779999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchH-HHHHHHHHHHhhcChhhhHHHHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL-SIFELLKCILTKVSALESESLWL 547 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~-~~~~~f~~Al~~~~~~~~~~lW~ 547 (676)
+.++...|++++|...+++++ +..|+++..|...+.+....+. .+ .+...+++|++..|.. ..+|.
T Consensus 72 g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~----------~~~aa~~~~~~al~l~P~~--~~~~~ 138 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSV-ELNPTQKDLVLKIAELLCKNDV----------TDGRAKYWVERAAKLFPGS--PAVYK 138 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCS----------SSSHHHHHHHHHHHHSTTC--HHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHhCcCC--HHHHH
Confidence 999999999999999999999 8999999999999988887764 33 3444568999877754 33454
Q ss_pred HH
Q 005817 548 MA 549 (676)
Q Consensus 548 ~~ 549 (676)
..
T Consensus 139 l~ 140 (150)
T 4ga2_A 139 LK 140 (150)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.3e-07 Score=87.83 Aligned_cols=151 Identities=12% Similarity=-0.021 Sum_probs=118.2
Q ss_pred CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHH
Q 005817 344 QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMD 422 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~ 422 (676)
+..+.+...+++++...|+++.+|..+|..+.. .+++++|...|++++...| .. .+.........
T Consensus 20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-------------~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-------------TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-------------TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-------------CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 356778888888888899999999999988875 5789999999999998877 33 22221111111
Q ss_pred HhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh--HHHH
Q 005817 423 MIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS--VQLW 500 (676)
Q Consensus 423 ~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~--~~lW 500 (676)
. .+....+...|++++..+|.++..|..++..+...|++++|...+++++ +..|.. ...|
T Consensus 86 ~-----------------~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~a~ 147 (176)
T 2r5s_A 86 Q-----------------QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQDGEVK 147 (176)
T ss_dssp H-----------------HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTTTTHHH
T ss_pred h-----------------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccChHHHH
Confidence 0 0111246889999999999999999999999999999999999999999 888875 5688
Q ss_pred HHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 501 LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 501 ~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
...+.+....|. .+++...|.++|.+
T Consensus 148 ~~l~~~~~~~g~----------~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 148 KTFMDILSALGQ----------GNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHCS----------SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----------CCcHHHHHHHHHHH
Confidence 888888877764 57788888888764
No 84
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=1.2e-05 Score=82.18 Aligned_cols=248 Identities=12% Similarity=0.009 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-- 206 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-- 206 (676)
..++..+++.++..+|.+..+|..--..+...+ .......++.++..+|.++.+|..-.-.. ...+
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL-~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hccCcc
Confidence 357899999999999999999987776665432 13567899999999999999999876554 4555
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCC
Q 005817 207 NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVEN 286 (676)
Q Consensus 207 ~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (676)
.++.+..++++++..+|.+..+|..-.-+-... +.
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l-----------~~---------------------------------- 159 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQA-----------AV---------------------------------- 159 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------TC----------------------------------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------Cc----------------------------------
Confidence 489999999999999999999997654332111 00
Q ss_pred CCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhccc-----------CcHHHHHHHHHH
Q 005817 287 TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLA-----------QSDDMHDKILSD 355 (676)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~-----------~~~~~a~~il~~ 355 (676)
..+.+...++++++..|.+...|.....++..+... ...+.+...+.+
T Consensus 160 ---------------------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 160 ---------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 124567888999999999988887766666554210 124567778899
Q ss_pred HHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCC
Q 005817 356 MQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSE 435 (676)
Q Consensus 356 ~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~ 435 (676)
++...|++..+|..+.-......+... . ..+..+.++++++.+++.++..|.. .|..-..........
T Consensus 219 ai~~~P~d~SaW~Y~r~ll~~~~~~~~-~-~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~--------- 286 (331)
T 3dss_A 219 AFFTDPNDQSAWFYHRWLLGAGSGRCE-L-SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALD--------- 286 (331)
T ss_dssp HHHHSTTCHHHHHHHHHHHHSSSCGGG-C-CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHC---------
T ss_pred HHHhCCCCHHHHHHHHHHHHhccCccc-c-chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhc---------
Confidence 999999999999866544432211100 0 0123467889999999999988876 454222211111100
Q ss_pred CChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 005817 436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVT 470 (676)
Q Consensus 436 ~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~ 470 (676)
..+..+.++..+.+.+..+|....-|.+...
T Consensus 287 ----~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 287 ----PLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp ----TTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ----ccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 0245678899999999999988777776543
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=9.4e-08 Score=88.88 Aligned_cols=168 Identities=12% Similarity=0.011 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (676)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~ 233 (676)
|...+.+...+..+...| ...+...|++++..+|+++..|...+.... ..|+++.|...|++++...| ++.++....
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 444455566666666666 578999999999999999999999999986 68899999999999999999 765544333
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (676)
.+.... . .....|.
T Consensus 81 ~~~~~~-------~-----------------------------------------------------------~~~~~a~ 94 (176)
T 2r5s_A 81 KLELHQ-------Q-----------------------------------------------------------AAESPEL 94 (176)
T ss_dssp HHHHHH-------H-----------------------------------------------------------HTSCHHH
T ss_pred HHHHHh-------h-----------------------------------------------------------cccchHH
Confidence 222110 0 0112357
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC--hhhHHHHHHHhccccCCCCCCCcCcchh
Q 005817 314 TIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (676)
Q Consensus 314 ~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~--~~~w~~la~~~~~~~~~~~~~~~~~~~~ 391 (676)
..|+++++..|++...+..+-.++... +..+.+...++++++..|+. +.+|..++..+.. .+
T Consensus 95 ~~~~~al~~~P~~~~~~~~la~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-------------~g 158 (176)
T 2r5s_A 95 KRLEQELAANPDNFELACELAVQYNQV---GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-------------LG 158 (176)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-------------HC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-------------hC
Confidence 889999999999988887776665543 46789999999999999986 5589888887754 46
Q ss_pred HHHHHHHHHHHHhhc
Q 005817 392 QMQKAIQVYEEALKN 406 (676)
Q Consensus 392 ~~~~A~~~ye~al~~ 406 (676)
+.+.|...|+++|..
T Consensus 159 ~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 159 QGNAIASKYRRQLYS 173 (176)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 678899999998854
No 86
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=3e-06 Score=86.01 Aligned_cols=245 Identities=10% Similarity=0.058 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh--HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHH
Q 005817 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS--QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDM 423 (676)
Q Consensus 347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~--~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~ 423 (676)
+.+....+.++..+|++..+|...+..... .+ .++++...++.++...|... +|..=-......
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-------------l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKN-------------LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------------CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-------------cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 567788889999999999999988877643 23 78999999999999888765 675432222111
Q ss_pred hcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhccCCChHHHHH
Q 005817 424 IAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--EARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 424 ~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~--~A~~l~~~al~~~~P~~~~lW~ 501 (676)
...... .+.++.+...+++++..+|.+...|..=.-++...|.++ +++..+++++ ...|.+...|.
T Consensus 117 ~~~l~~-----------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d~~N~sAW~ 184 (306)
T 3dra_A 117 MELNNN-----------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTDLKNNSAWS 184 (306)
T ss_dssp HHHTTT-----------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHCTTCHHHHH
T ss_pred HHhccc-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhCCCCHHHHH
Confidence 100000 134688999999999999999999999888888888888 9999999999 89999999999
Q ss_pred HHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCc
Q 005817 502 LRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGF 581 (676)
Q Consensus 502 ~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 581 (676)
.+..+....+... +....++..+.+.++|...|.+. +.|......+...+.....+.+.+.+.+..+......+
T Consensus 185 ~R~~ll~~l~~~~----~~~~~~eEl~~~~~aI~~~p~n~--SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 185 HRFFLLFSKKHLA----TDNTIDEELNYVKDKIVKCPQNP--STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp HHHHHHHSSGGGC----CHHHHHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred HHHHHHHhccccc----hhhhHHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 9887776543200 01125677788888888777653 46875433333322111111111111111110000011
Q ss_pred chHHHHHHHHHHhcCHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 005817 582 SLPSAIINLVIQKDGIQQAREMYKRFLA-LPRPGLVLYQNCI 622 (676)
Q Consensus 582 ~~~~~y~~~~~~~g~~~~Ar~iy~~al~-~~p~~~~l~~~~i 622 (676)
......++...+.|+.++|.++|++++. ..|....+|..-+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 1122344555577889999999999886 6777778887654
No 87
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=3.4e-07 Score=102.14 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|...|++++...|++...|..++..+...| .+.+...|++++...|+++..|..++.... ..|+++.|...|+++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQA 83 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHH
Confidence 456788999999999999999999999988877 588999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhh
Q 005817 219 LRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQ 298 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (676)
++..|++..+|..++......
T Consensus 84 l~~~p~~~~~~~~la~~~~~~----------------------------------------------------------- 104 (568)
T 2vsy_A 84 SDAAPEHPGIALWLGHALEDA----------------------------------------------------------- 104 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHT-----------------------------------------------------------
T ss_pred HhcCCCCHHHHHHHHHHHHHc-----------------------------------------------------------
Confidence 999999988887776554321
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005817 299 KSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLA 371 (676)
Q Consensus 299 ~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la 371 (676)
++++.|...|+++++..|++...+..+..++......+..+.+...++++++..|++...+..++
T Consensus 105 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 105 --------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp --------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 25677899999999999988777777666655431113567888899999999998876665544
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=7.9e-07 Score=89.87 Aligned_cols=171 Identities=10% Similarity=-0.039 Sum_probs=135.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817 152 MRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 152 ~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~ 230 (676)
...|++...+...+..+...| ...+...|++++..+|+++.+|...+.... ..|+.+.|...|++++...|+. ..+.
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~-~~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDT-RYQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSH-HHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcch-HHHH
Confidence 345999999999998888877 578999999999999999999999999987 6889999999999999999953 3222
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhH
Q 005817 231 EYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLR 310 (676)
Q Consensus 231 ~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (676)
....+.... .+..+
T Consensus 189 ~~~~~~l~~------------------------------------------------------------------~~~~~ 202 (287)
T 3qou_A 189 LVAQIELLX------------------------------------------------------------------QAADT 202 (287)
T ss_dssp HHHHHHHHH------------------------------------------------------------------HHTSC
T ss_pred HHHHHHHHh------------------------------------------------------------------hcccC
Confidence 222221110 01234
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC--hhhHHHHHHHhccccCCCCCCCcCc
Q 005817 311 VLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD--PKYWDWLARLKMTDSVSKDGTSEDI 388 (676)
Q Consensus 311 ~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~--~~~w~~la~~~~~~~~~~~~~~~~~ 388 (676)
.|...|++++...|++.+.+..+-.++... +..+.+...+.++++..|++ +.+|..++..+..
T Consensus 203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~---g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~------------ 267 (287)
T 3qou_A 203 PEIQQLQQQVAENPEDAALATQLALQLHQV---GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA------------ 267 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH------------
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH------------
Confidence 567889999999999998888877666543 36789999999999999998 7789999888754
Q ss_pred chhHHHHHHHHHHHHhhc
Q 005817 389 VPSQMQKAIQVYEEALKN 406 (676)
Q Consensus 389 ~~~~~~~A~~~ye~al~~ 406 (676)
.++.+.|...|++++..
T Consensus 268 -~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 268 -LGTGDALASXYRRQLYA 284 (287)
T ss_dssp -HCTTCHHHHHHHHHHHH
T ss_pred -cCCCCcHHHHHHHHHHH
Confidence 46678889999988753
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=2.4e-06 Score=82.71 Aligned_cols=188 Identities=14% Similarity=0.047 Sum_probs=124.0
Q ss_pred hHHHhhhHHHHHHHHHHHhcCCCch---hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh---hHHHHHHHhcc
Q 005817 303 LFREQGLRVLQTIYSGAVEALPSSF---NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK---YWDWLARLKMT 376 (676)
Q Consensus 303 ~~~~~~~~~a~~iy~~Al~~~p~~~---~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~---~w~~la~~~~~ 376 (676)
.+..++++.|...|+++++..|++. ..+..+..++. ..+..+.+...++++++.+|+++. ++..++..+..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~---~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY---KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 3445789999999999999988764 23333333332 234688999999999999999975 57777766543
Q ss_pred ccCCC----CCCC-cCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHH--HHHhcCccccccCCCCChhhhhhHHHHH
Q 005817 377 DSVSK----DGTS-EDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFL--MDMIAPKKEETRDSELPSHVEHYISHLL 448 (676)
Q Consensus 377 ~~~~~----~~~~-~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~a~ 448 (676)
.+... .... .....++.++|...|+++++..|... .+....... .......... .+......|++..|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~---~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYS---VAEYYTERGAWVAVV 167 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHcCcHHHHH
Confidence 11000 0000 00114789999999999999988654 333221110 0000000000 000001257789999
Q ss_pred HHHHHHHHcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 449 TVYEKAEAMGCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 449 ~iye~al~~~p~~~---~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
..|++++...|.++ +.+...+..+.+.|++++|+..++++. ...|++.
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~-~~~~~~~ 218 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA-ANSSNTL 218 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCCSCCC
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhCCCch
Confidence 99999999999875 679999999999999999999999988 7777653
No 90
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=2.2e-07 Score=81.26 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=95.3
Q ss_pred hcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCC
Q 005817 358 RDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSEL 436 (676)
Q Consensus 358 ~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~ 436 (676)
..+|+..+.|...|..++. .+++++|+..|+++++..|... .|.........
T Consensus 7 ~inP~~a~~~~~~G~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-------------- 59 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFK-------------KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-------------- 59 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------------
T ss_pred HHCHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh--------------
Confidence 3456666777778887776 5789999999999999988754 44433333322
Q ss_pred ChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 437 PSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 437 ~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
.|.++.|...|++|+..+|.++..|...+..+...|++++|...+++++ +..|++...+.....
T Consensus 60 ----~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 60 ----LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL-QVDPSNEEAREGVRN 123 (126)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHH
T ss_pred ----hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCcCCHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999 899999888776543
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.63 E-value=4.1e-07 Score=90.36 Aligned_cols=224 Identities=14% Similarity=0.068 Sum_probs=137.1
Q ss_pred CchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHH
Q 005817 173 NGRMKKVLAQVIRF--------HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVC-----PTSEELWVEYLRMELTY 239 (676)
Q Consensus 173 ~~~~~~~~~ral~~--------~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~-----p~~~~lW~~y~~~e~~~ 239 (676)
...+...|++|+.. +|..+.+|...+.... ..|+++.|...|++++... ++++.....+..+-..+
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 35677777777763 3556778888888876 6889999999999999885 44343333332221111
Q ss_pred HHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHH
Q 005817 240 LNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGA 319 (676)
Q Consensus 240 ~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~A 319 (676)
. ..++++.|...|++|
T Consensus 96 ~----------------------------------------------------------------~~g~~~~A~~~~~~a 111 (283)
T 3edt_B 96 G----------------------------------------------------------------KRGKYKEAEPLCKRA 111 (283)
T ss_dssp H----------------------------------------------------------------TTTCHHHHHHHHHHH
T ss_pred H----------------------------------------------------------------HhccHHHHHHHHHHH
Confidence 0 013567788888888
Q ss_pred HhcC--------CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhc--------CCCChhhHHHHHHHhccccCCCCC
Q 005817 320 VEAL--------PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRD--------FLVDPKYWDWLARLKMTDSVSKDG 383 (676)
Q Consensus 320 l~~~--------p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~--------~p~~~~~w~~la~~~~~~~~~~~~ 383 (676)
+... |.....+..+..++ ...+..+.+...+++++.. .|....++..+|..+..
T Consensus 112 l~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------- 181 (283)
T 3edt_B 112 LEIREKVLGKFHPDVAKQLNNLALLC---QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK------- 181 (283)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH---HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-------
Confidence 8762 33333333333332 2234577888888888876 45556678888888865
Q ss_pred CCcCcchhHHHHHHHHHHHHhhccCc----------hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 384 TSEDIVPSQMQKAIQVYEEALKNVPS----------SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 384 ~~~~~~~~~~~~A~~~ye~al~~~~~----------~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
.+++++|...|+++++..+. ...|........... ... ....+..+...++.
T Consensus 182 ------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 182 ------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD---KRR---------DSAPYGEYGSWYKA 243 (283)
T ss_dssp ------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC---CCC---------C------------C
T ss_pred ------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC---chh---------HHHHHHHHHHHHHh
Confidence 57899999999999975321 114433322222110 000 01234445555554
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.....|.....+...+.++...|++++|..++++++
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444445567789999999999999999999999998
No 92
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.61 E-value=6e-07 Score=78.48 Aligned_cols=95 Identities=19% Similarity=0.103 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....|...|++|+...|.+..+|...+......| +..+...|++++.++|+++..|...+.... ..|+++.|...|++
T Consensus 28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 28 DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV-AMREWSKAQRAYED 106 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence 3678999999999999999999999999988887 578999999999999999999999999886 68899999999999
Q ss_pred HHHhCCCCHHHHHHHHH
Q 005817 218 GLRVCPTSEELWVEYLR 234 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~ 234 (676)
+++.+|++.+++..+.+
T Consensus 107 al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 107 ALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHCTTCHHHHHHHHH
T ss_pred HHHHCcCCHHHHHHHHH
Confidence 99999999988876654
No 93
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.61 E-value=3.7e-05 Score=82.97 Aligned_cols=81 Identities=16% Similarity=0.048 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCC
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTL-Y--LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSP 518 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l-~--~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p 518 (676)
+++++|...|+++. |.++..+...+.+ + ...+++++|...|++++ . +.++..+.....++.. |. ..|
T Consensus 231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~--~g~~~A~~~Lg~~y~~-G~---g~~ 300 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-A--ADQPRAELLLGKLYYE-GK---WVP 300 (452)
T ss_dssp CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-H--TTCHHHHHHHHHHHHH-CS---SSC
T ss_pred CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHc-CC---CCC
Confidence 35566666666665 5555666666655 3 34566666666666666 2 2344444444444432 21 000
Q ss_pred ChhchHHHHHHHHHHH
Q 005817 519 SKADILSIFELLKCIL 534 (676)
Q Consensus 519 ~~~~~~~~~~~f~~Al 534 (676)
.+.+++.+.|++|.
T Consensus 301 --~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 301 --ADAKAAEAHFEKAV 314 (452)
T ss_dssp --CCHHHHHHHHHTTT
T ss_pred --CCHHHHHHHHHHHh
Confidence 14566666666665
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.61 E-value=3.6e-06 Score=81.48 Aligned_cols=192 Identities=16% Similarity=0.024 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817 158 IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP---GVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (676)
Q Consensus 158 ~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~---~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~ 233 (676)
...+...+......| +..+...|++++..+|.++ ..|...+...+ ..|+++.|...|+++++.+|+++.+-..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344445554555555 5889999999999999874 68888888776 688999999999999999999876433333
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (676)
.+...+... .+. .+. .+..+.. .....++.+.|.
T Consensus 83 ~~g~~~~~~--~~~-~~~------------------------~~~~~~~-------------------~~~~~~~~~~A~ 116 (225)
T 2yhc_A 83 MRGLTNMAL--DDS-ALQ------------------------GFFGVDR-------------------SDRDPQQARAAF 116 (225)
T ss_dssp HHHHHHHHH--HC----------------------------------------------------------CCHHHHHHH
T ss_pred HHHHHHHhh--hhh-hhh------------------------hhhccch-------------------hhcCcHHHHHHH
Confidence 333222110 000 000 0000000 000124678999
Q ss_pred HHHHHHHhcCCCchhHHHHHHH--------------HHHHhcccCcHHHHHHHHHHHHhcCCCCh---hhHHHHHHHhcc
Q 005817 314 TIYSGAVEALPSSFNLRQRFFE--------------IVEATNLAQSDDMHDKILSDMQRDFLVDP---KYWDWLARLKMT 376 (676)
Q Consensus 314 ~iy~~Al~~~p~~~~~~~~~~~--------------~~~~fe~~~~~~~a~~il~~~~~~~p~~~---~~w~~la~~~~~ 376 (676)
..|+++++..|++...+..... +...+...+....+...++++++.+|+++ .++..++..+..
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 9999999999988655432211 00111112457789999999999999986 568888888876
Q ss_pred ccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc
Q 005817 377 DSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS 409 (676)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~ 409 (676)
.++.+.|+..|+.+....|+
T Consensus 197 -------------~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 197 -------------MQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp -------------TTCHHHHHHHHHHHHHCCSC
T ss_pred -------------cCCcHHHHHHHHHHHhhCCC
Confidence 57899999999988877664
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=1.1e-07 Score=86.17 Aligned_cols=92 Identities=7% Similarity=-0.125 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (676)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p 223 (676)
..|++++...|++...|...+..+.+.| +..+...|++++..+|.++..|...+.... ..|+++.|...|+++++..|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCC
Confidence 4567888889999999999998888877 589999999999999999999999999886 68899999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 005817 224 TSEELWVEYLRMEL 237 (676)
Q Consensus 224 ~~~~lW~~y~~~e~ 237 (676)
+++.+|...+....
T Consensus 102 ~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 102 NDYTPVFHTGQCQL 115 (151)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99998887776543
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.59 E-value=6.1e-07 Score=100.12 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR 509 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~ 509 (676)
|++++|...|++++..+|.++..|...+..+...|++++|...+++++ +..|++...|..++.+...
T Consensus 71 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH-QLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444 4444444444444444433
No 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=5.1e-07 Score=81.40 Aligned_cols=91 Identities=7% Similarity=-0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (676)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p 223 (676)
..|++++...|.+...|...+..+...| +..+...|++++...|+++..|...+.... ..|+++.|...|++++...|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence 4688999999999999999999888877 588999999999999999999999998886 68899999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005817 224 TSEELWVEYLRME 236 (676)
Q Consensus 224 ~~~~lW~~y~~~e 236 (676)
+++.+|...+...
T Consensus 87 ~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 87 XEPRFPFHAAECL 99 (148)
T ss_dssp TCTHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 9988887666543
No 98
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.58 E-value=8e-05 Score=87.76 Aligned_cols=161 Identities=11% Similarity=0.078 Sum_probs=99.7
Q ss_pred HhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHH
Q 005817 339 ATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTK 418 (676)
Q Consensus 339 ~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~ 418 (676)
.++..+.++.|...|..+ ..|..++..+.. .++++.|++.|.+|. +...|.....
T Consensus 1204 ~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvk-------------Lge~q~AIEaarKA~----n~~aWkev~~ 1258 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-------------LGEYQAAVDGARKAN----STRTWKEVCF 1258 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHH-------------hCCHHHHHHHHHHhC----CHHHHHHHHH
Confidence 333334566777777764 357777777654 466888888888773 2345644333
Q ss_pred HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 419 FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 419 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
.+.+ .+.+..|+..... +. .+++.....+.++...|.+++|+.+++.++ +..|.+..
T Consensus 1259 acve------------------~~Ef~LA~~cgl~-Ii---v~~deLeeli~yYe~~G~feEAI~LlE~aL-~LeraH~g 1315 (1630)
T 1xi4_A 1259 ACVD------------------GKEFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMG 1315 (1630)
T ss_pred HHhh------------------hhHHHHHHHHHHh-hh---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccChhHhH
Confidence 3322 2445555554432 32 245556678888889999999999999999 77788888
Q ss_pred HHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHhh
Q 005817 499 LWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMNQ 556 (676)
Q Consensus 499 lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~----~~~~~lW~~~l~~~~~~ 556 (676)
+|.....+..+... +++.+..+.|...+. +|+ -+..-+|..+.-.|...
T Consensus 1316 mftELaiLyaKy~p--------eklmEhlk~f~~rin-i~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1316 MFTELAILYSKFKP--------QKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HHHHHHHHHHhCCH--------HHHHHHHHHHHHhcc-cchHhHHHHHHHHHHHHHHHHHhc
Confidence 88888777776532 245556666776654 232 12245777655444443
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=1.4e-06 Score=83.42 Aligned_cols=160 Identities=11% Similarity=0.052 Sum_probs=114.9
Q ss_pred hHHHhhhHHHHHHHHHHHhcCCCchhHHHH----------------HHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhh
Q 005817 303 LFREQGLRVLQTIYSGAVEALPSSFNLRQR----------------FFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKY 366 (676)
Q Consensus 303 ~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~----------------~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~ 366 (676)
.+..++++.|...|+++++..|++.+.+.. +-.++... +..+.+...++++++..|+++.+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN---RNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHH
Confidence 344578999999999999999988777655 44444332 46789999999999999999999
Q ss_pred HHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817 367 WDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS 445 (676)
Q Consensus 367 w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 445 (676)
|..+|..+.. .+++++|...|+++++..|... .|........... .....
T Consensus 91 ~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~----------------~~~~~ 141 (208)
T 3urz_A 91 LEACAEMQVC-------------RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA----------------EQEKK 141 (208)
T ss_dssp HHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------HHHHH
T ss_pred HHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh----------------HHHHH
Confidence 9999999876 5889999999999999988754 4433322221100 12345
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
.+...|.+++...|. ...|...+..+...|++++|+..+++++ +..|++
T Consensus 142 ~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al-~l~P~~ 190 (208)
T 3urz_A 142 KLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVI-LRFPST 190 (208)
T ss_dssp HHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHT-TTSCCH
T ss_pred HHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCH
Confidence 666777776543221 2234445555667899999999999999 899985
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.56 E-value=1.9e-07 Score=84.58 Aligned_cols=113 Identities=11% Similarity=-0.105 Sum_probs=95.3
Q ss_pred HHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccc
Q 005817 353 LSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEET 431 (676)
Q Consensus 353 l~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~ 431 (676)
+.+++...|+++..|..+|..+.. .+++++|...|++++...|... .|.........
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~-------------~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~--------- 82 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYN-------------KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI--------- 82 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------
Confidence 345566778888888888888765 5889999999999999988755 56544333332
Q ss_pred cCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 432 RDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 432 ~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
.|.++.|...|++|+..+|.++..|...+..+...|++++|+..|++++ +..|++.
T Consensus 83 ---------~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al-~l~~~~~ 138 (151)
T 3gyz_A 83 ---------KEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI-QHSNDEK 138 (151)
T ss_dssp ---------TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCHH
T ss_pred ---------HccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCHH
Confidence 4779999999999999999999999999999999999999999999999 8888875
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.56 E-value=2.1e-06 Score=74.36 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=105.6
Q ss_pred hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhH
Q 005817 366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI 444 (676)
Q Consensus 366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 444 (676)
.|..++..+.. .+++++|...|+++++..|... .|...+..... .+++
T Consensus 3 ~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~~~ 51 (136)
T 2fo7_A 3 AWYNLGNAYYK-------------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK------------------QGDY 51 (136)
T ss_dssp HHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HTCH
T ss_pred HHHHHHHHHHH-------------cCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH------------------hcCH
Confidence 45666666654 4779999999999998776543 44333333322 3678
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchH
Q 005817 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADIL 524 (676)
Q Consensus 445 ~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~ 524 (676)
+.|...|++++..+|.++..|...+..+...|++++|..++++++ ...|.+...|...+.+....+ +.+
T Consensus 52 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~la~~~~~~~----------~~~ 120 (136)
T 2fo7_A 52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRSAEAWYNLGNAYYKQG----------DYD 120 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHTTT----------CHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHc----------cHH
Confidence 999999999999999999999999999999999999999999999 788999999999888887665 478
Q ss_pred HHHHHHHHHHhhcC
Q 005817 525 SIFELLKCILTKVS 538 (676)
Q Consensus 525 ~~~~~f~~Al~~~~ 538 (676)
++.+.|.+++...|
T Consensus 121 ~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 121 EAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCC
Confidence 88889999887554
No 102
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=3.3e-06 Score=84.99 Aligned_cols=192 Identities=9% Similarity=0.023 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (676)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~ 233 (676)
|.+...|...+..+...| +..+...|++++..+|+++.+|...+.... ..|+++.|...|+++++..|++..+|..++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 567788888888887777 578999999999999999999999999886 688999999999999999999888776665
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHH
Q 005817 234 RMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQ 313 (676)
Q Consensus 234 ~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (676)
...... ++++.|.
T Consensus 80 ~~~~~~-------------------------------------------------------------------g~~~~A~ 92 (281)
T 2c2l_A 80 QCQLEM-------------------------------------------------------------------ESYDEAI 92 (281)
T ss_dssp HHHHHT-------------------------------------------------------------------TCHHHHH
T ss_pred HHHHHc-------------------------------------------------------------------CCHHHHH
Confidence 443221 2567788
Q ss_pred HHHHHHHhcCCCch-----hHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCc
Q 005817 314 TIYSGAVEALPSSF-----NLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDI 388 (676)
Q Consensus 314 ~iy~~Al~~~p~~~-----~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~ 388 (676)
..|++|++..|++. .++..+ .. ..............|.++.+...++.+.
T Consensus 93 ~~~~~al~l~p~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~-------------- 147 (281)
T 2c2l_A 93 ANLQRAYSLAKEQRLNFGDDIPSAL-----RI------AKKKRWNSIEERRIHQESELHSYLTRLI-------------- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCCCCSHHHHHH-----HH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--------------
T ss_pred HHHHHHHHhCccchhhHHHHHHHHH-----HH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--------------
Confidence 88999988776542 222211 10 1112222233356778888777776654
Q ss_pred chhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817 389 VPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (676)
Q Consensus 389 ~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~ 457 (676)
.++.++|.+.|+++++..|... +.......... ..+.++.+..+|+++...
T Consensus 148 -~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----------------~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 -AAERERELEECQRNHEGHEDDGHIRAQQACIEAK-----------------HDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHH-----------------HHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHH-----------------HHHHHHHHHHHHHhhhcc
Confidence 4788999999999998877654 22221111111 124567788888877654
No 103
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.52 E-value=2.7e-07 Score=82.35 Aligned_cols=91 Identities=7% Similarity=-0.133 Sum_probs=77.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817 145 EIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (676)
Q Consensus 145 ~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p 223 (676)
..|++++...|.+...|...+..+...| +..+...|++++..+|.++.+|...+.... ..|+++.|...|++++...|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCC
Confidence 4677888889999999999988888777 588999999999999999999999999886 68899999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 005817 224 TSEELWVEYLRME 236 (676)
Q Consensus 224 ~~~~lW~~y~~~e 236 (676)
+++.+|..++...
T Consensus 84 ~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 84 NEPRFPFHAAECH 96 (142)
T ss_dssp TCTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9988887666543
No 104
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=8.5e-05 Score=75.82 Aligned_cols=252 Identities=12% Similarity=0.082 Sum_probs=170.2
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLN----------VTAARALMQNGLRVCPTSEELWVEYLRMELTYLNK 242 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~----------~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~ 242 (676)
..++...++.+|..+|.+..+|..-..... ..+. +..+...++.++..+|.+..+|..-..+....
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~-~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l--- 121 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL--- 121 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc---
Confidence 358999999999999999999988766553 2222 67899999999999999999998765432211
Q ss_pred HHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhc
Q 005817 243 LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA 322 (676)
Q Consensus 243 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~ 322 (676)
+. ..++.+..+++++++.
T Consensus 122 --------~~------------------------------------------------------~~~~~EL~~~~k~l~~ 139 (331)
T 3dss_A 122 --------PE------------------------------------------------------PNWARELELCARFLEA 139 (331)
T ss_dssp --------SS------------------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred --------Cc------------------------------------------------------ccHHHHHHHHHHHHHh
Confidence 00 0235678899999999
Q ss_pred CCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCC-CCCCcCcchhHHHHHHHHHH
Q 005817 323 LPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSK-DGTSEDIVPSQMQKAIQVYE 401 (676)
Q Consensus 323 ~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~-~~~~~~~~~~~~~~A~~~ye 401 (676)
.|.+...|..-.-++..++. ..+.+...+++++..+|.+..+|...+.......... .+.......+.++++.+.+.
T Consensus 140 dprNy~AW~~R~~vl~~l~~--~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~ 217 (331)
T 3dss_A 140 DERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 217 (331)
T ss_dssp CTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence 99998888654444444431 2467778889999999999999988876653321100 00000011367899999999
Q ss_pred HHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHH---hc
Q 005817 402 EALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR--YVTLYL---QL 475 (676)
Q Consensus 402 ~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~--~~~l~~---~~ 475 (676)
+++...|.+. .|. |..+......... + + .....+.++++++.++++++..|.+ .|.. .+.+.. ..
T Consensus 218 ~ai~~~P~d~SaW~-Y~r~ll~~~~~~~-~--~---~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~ 288 (331)
T 3dss_A 218 NAFFTDPNDQSAWF-YHRWLLGAGSGRC-E--L---SVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPL 288 (331)
T ss_dssp HHHHHSTTCHHHHH-HHHHHHHSSSCGG-G--C---CHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTT
T ss_pred HHHHhCCCCHHHHH-HHHHHHHhccCcc-c--c---chHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhccc
Confidence 9999999766 664 4555554321100 0 0 0112366889999999999999987 3543 232221 34
Q ss_pred CCHHHHHHHHHHHhhccCCChHHHHHH
Q 005817 476 GKLDEARKLAAKLCSGKLSDSVQLWLL 502 (676)
Q Consensus 476 ~~~~~A~~l~~~al~~~~P~~~~lW~~ 502 (676)
+..++++..+.+++ +..|--..-|..
T Consensus 289 ~~~~~~~~~l~~l~-~~Dp~r~~~y~d 314 (331)
T 3dss_A 289 LYEKETLQYFSTLK-AVDPMRAAYLDD 314 (331)
T ss_dssp TTHHHHHHHHHHHH-HHCGGGHHHHHH
T ss_pred ccHHHHHHHHHHHH-HhCcchhhHHHH
Confidence 66777888888888 777766555554
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.52 E-value=4.9e-05 Score=77.98 Aligned_cols=259 Identities=12% Similarity=0.098 Sum_probs=166.2
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALG 251 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~ 251 (676)
..++..+++++|..+|.+..+|..-..... ..| .++.+...++++|..+|.+..+|..-..+.... .+
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l----------~~ 138 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI----------SP 138 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH----------CC
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----------cC
Confidence 467899999999999999999998887764 455 699999999999999999999998765432211 00
Q ss_pred cccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHH
Q 005817 252 EDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQ 331 (676)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~ 331 (676)
.+.+.+..+++++++..|.+...|.
T Consensus 139 -------------------------------------------------------~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 139 -------------------------------------------------------QDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp -------------------------------------------------------SCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred -------------------------------------------------------CChHHHHHHHHHHHHhCCCCHHHHH
Confidence 0123567888999999999988886
Q ss_pred HHHHHHHHhcccC-----cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhc
Q 005817 332 RFFEIVEATNLAQ-----SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN 406 (676)
Q Consensus 332 ~~~~~~~~fe~~~-----~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~ 406 (676)
.-.-++..++... ....+...++++++.+|.+..+|...+......... ......++++.+.+++++..
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~------~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA------ETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc------ccchHHHHHHHHHHHHHHHh
Confidence 5433444333110 112566788999999999999999888775432110 00124578999999999999
Q ss_pred cCchh-HHHHHHHHHHHHhcCccccccC----CCCChhhhhhHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHhc
Q 005817 407 VPSSM-IFDLYTKFLMDMIAPKKEETRD----SELPSHVEHYISHLLTVYEKAEAM------GCLTEDIAHRYVTLYLQL 475 (676)
Q Consensus 407 ~~~~~-lw~~y~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~a~~iye~al~~------~p~~~~lw~~~~~l~~~~ 475 (676)
.|.+. .|. |..+.......... +.+ -.+.+...-......+.....+.. .+.++-.+--.++++...
T Consensus 238 ~P~n~SaW~-Ylr~Ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 315 (349)
T 3q7a_A 238 IPHNVSAWN-YLRGFLKHFSLPLV-PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQ 315 (349)
T ss_dssp CTTCHHHHH-HHHHHHHHTTCCSG-GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHH-HHHHHHHhcCCCcc-cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhc
Confidence 99766 775 44554443211100 000 000000000011111111111111 145666777788899899
Q ss_pred CCHHHHHHHHHHHhhccCCChHHHHHHHHH
Q 005817 476 GKLDEARKLAAKLCSGKLSDSVQLWLLRIS 505 (676)
Q Consensus 476 ~~~~~A~~l~~~al~~~~P~~~~lW~~~i~ 505 (676)
|+.++|.++++.+..+..|--...|.-++.
T Consensus 316 ~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 316 NRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 999999999999875667777778877654
No 106
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.48 E-value=1.2e-05 Score=84.44 Aligned_cols=189 Identities=10% Similarity=-0.101 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCCh------hhHHHHHHHhccc
Q 005817 308 GLRVLQTIYSGAVEALPSSFN----LRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDP------KYWDWLARLKMTD 377 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~----~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~------~~w~~la~~~~~~ 377 (676)
+++.|...|++|++..+.... ....+..+...+...+..+.|...+++++...|... .++..+|..+..
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~- 236 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS- 236 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-
Confidence 566778888888876433221 111111121222222467788888888887665443 367778887765
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccC---c-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---S-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
.+++++|...|+++++..+ . ......+...-.-.. ..|++++|...|++
T Consensus 237 ------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 237 ------------QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY---------------KLGKIDKAHEYHSK 289 (383)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH---------------HTTCHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH---------------HCCCHHHHHHHHHH
Confidence 5789999999999998321 1 112222222211111 14778999999999
Q ss_pred HHHcC-----CCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHH
Q 005817 454 AEAMG-----CLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS 525 (676)
Q Consensus 454 al~~~-----p~~~~lw~~~~~l~~~~~~---~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~ 525 (676)
|+... |.....+...+.++...|+ +++|..+++++- ..|....++...+.+....| +.++
T Consensus 290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g----------~~~~ 357 (383)
T 3ulq_A 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERK----------NFQK 357 (383)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTT----------CHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCC----------CHHH
Confidence 99862 2222334556777778888 788888887753 34556677777777777766 4788
Q ss_pred HHHHHHHHHhh
Q 005817 526 IFELLKCILTK 536 (676)
Q Consensus 526 ~~~~f~~Al~~ 536 (676)
+.+.|++|+..
T Consensus 358 A~~~~~~al~~ 368 (383)
T 3ulq_A 358 ASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888763
No 107
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.48 E-value=3.6e-06 Score=88.52 Aligned_cols=252 Identities=8% Similarity=0.067 Sum_probs=156.5
Q ss_pred HHhCCCCHHHHHH------HHHHHHHcc-CchHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 151 VMRFKGDIELWFK------YMEFCRQRK-NGRMKKVLAQVIRF---HPK---VPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 151 l~~~p~~~~lW~~------y~~~~~~~~-~~~~~~~~~ral~~---~P~---~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
+...|.+.+-+.. .+.+....| +..+...|++|+.. .|+ ...+|...+.... ..|+++.|...+++
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 3345555555544 333334445 57899999999987 333 3467777787775 68899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
|+...+....--...+...... |.
T Consensus 169 al~~~~~~~~~~~~~~~~~~~l-----------g~--------------------------------------------- 192 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLF-----------AT--------------------------------------------- 192 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHH-----------HH---------------------------------------------
T ss_pred HHHHHHhCccchHHHHHHHHHH-----------HH---------------------------------------------
Confidence 9998775432011111111100 00
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCC---chhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh-----cC-CCChhhHH
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPS---SFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR-----DF-LVDPKYWD 368 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~---~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~-----~~-p~~~~~w~ 368 (676)
.....++++.|...|++|++..|. .......+..+...+...+..+.|...+++++. .. |....++.
T Consensus 193 ----~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 193 ----NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred ----HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 000114678889999999876432 222222222222222223467889999998888 45 66677888
Q ss_pred HHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817 369 WLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS 445 (676)
Q Consensus 369 ~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 445 (676)
.+|..+.. .+++++|...|++|++..+. ......+ ...-..+.. .++ ...+.
T Consensus 269 ~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~l~~~~~~-~~~----------~~~~~ 323 (383)
T 3ulq_A 269 LITQIHYK-------------LGKIDKAHEYHSKGMAYSQKAGDVIYLSEF-EFLKSLYLS-GPD----------EEAIQ 323 (383)
T ss_dssp HHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHTS-SCC----------HHHHH
T ss_pred HHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhC-CCc----------HHHHH
Confidence 99998876 57899999999999986542 1111111 222222211 100 13367
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+|..+++++ ...|...+++...+.++...|++++|...+++++
T Consensus 324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888776 2224446688889999999999999999999998
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=5.9e-07 Score=80.96 Aligned_cols=116 Identities=11% Similarity=-0.016 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE 430 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d 430 (676)
.+++++...|++...|..+|..++. .+++++|...|++++...|... .|.........
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------- 67 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQ-------------SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-------- 67 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHH-------------cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--------
Confidence 4566677777777788888887765 5789999999999999888654 55444333332
Q ss_pred ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817 431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (676)
Q Consensus 431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (676)
.|.++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|+++..
T Consensus 68 ----------~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~ 125 (148)
T 2vgx_A 68 ----------MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ-ELIANXPEF 125 (148)
T ss_dssp ----------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTCGGG
T ss_pred ----------HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCCCcc
Confidence 4779999999999999999999999999999999999999999999999 777776544
No 109
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=2.8e-06 Score=78.59 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCCH--HHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAW-EFDHNLNV--TAARAL 214 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~-e~~~~~~~--~~Ar~~ 214 (676)
....+...|++++...|.+...|..++..+...| +..+...|++++...|.++.+|..++.. .. ..|+. +.|...
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAM 103 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHH
Confidence 3456778999999999999999999999998877 5789999999999999999999999988 54 67788 999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q 005817 215 MQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 215 ~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
|++++...|.+..+|..++....
T Consensus 104 ~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 104 IDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH
Confidence 99999999999888877665543
No 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=3.8e-06 Score=84.54 Aligned_cols=195 Identities=9% Similarity=-0.071 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHH
Q 005817 188 PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEK 267 (676)
Q Consensus 188 P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 267 (676)
|.++..|...+...+ ..|+++.|...|++++...|++..+|...+......
T Consensus 1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------------------------- 51 (281)
T 2c2l_A 1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM---------------------------- 51 (281)
T ss_dssp CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT----------------------------
T ss_pred ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----------------------------
Confidence 667788888888876 688999999999999999999988887666543321
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHH
Q 005817 268 RWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDD 347 (676)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~ 347 (676)
++++.|...|++|++..|++...+..+-.++... +..+
T Consensus 52 ---------------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~ 89 (281)
T 2c2l_A 52 ---------------------------------------QQPEQALADCRRALELDGQSVKAHFFLGQCQLEM---ESYD 89 (281)
T ss_dssp ---------------------------------------TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT---TCHH
T ss_pred ---------------------------------------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHH
Confidence 2567889999999999998877776665554432 3577
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcC
Q 005817 348 MHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAP 426 (676)
Q Consensus 348 ~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~ 426 (676)
.+...+.+++...|+++......+...+ ...++...........+... +...+..+.
T Consensus 90 ~A~~~~~~al~l~p~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~------ 147 (281)
T 2c2l_A 90 EAIANLQRAYSLAKEQRLNFGDDIPSAL----------------RIAKKKRWNSIEERRIHQESELHSYLTRLI------ 147 (281)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSHHHHHH----------------HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHH----------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------
Confidence 8889999988888876322111111110 11222222223333444433 333332221
Q ss_pred ccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHh
Q 005817 427 KKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQL-GKLDEARKLAAKLC 489 (676)
Q Consensus 427 ~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~-~~~~~A~~l~~~al 489 (676)
.|..++|.+.|++|+..+|.+..+......++.+. +.+++|..++.++.
T Consensus 148 --------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 148 --------------AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp --------------HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred --------------HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36678999999999999998887777777777766 66888999999887
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=3.8e-07 Score=81.38 Aligned_cols=118 Identities=12% Similarity=-0.053 Sum_probs=93.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCcccc
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEE 430 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d 430 (676)
.+.+++...|++...+..+|..++. .+++++|...|++++...|... .|.........
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------- 64 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQ-------------AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-------- 64 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--------
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHH-------------HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------
Confidence 4455566677777777888877765 5789999999999999888654 55444333332
Q ss_pred ccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
.|+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.++..+.
T Consensus 65 ----------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 124 (142)
T 2xcb_A 65 ----------LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR-ALAAAQPAHEA 124 (142)
T ss_dssp ----------TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCGGGHH
T ss_pred ----------HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCcchHH
Confidence 4779999999999999999999999999999999999999999999999 77787654443
No 112
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.42 E-value=7.7e-06 Score=70.64 Aligned_cols=95 Identities=15% Similarity=0.248 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+..+|++++...|.+...|..++..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKA 95 (136)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 567889999999999999999999998887776 578999999999999999999999999886 788999999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRM 235 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~ 235 (676)
+...|.+..+|..++.+
T Consensus 96 ~~~~~~~~~~~~~la~~ 112 (136)
T 2fo7_A 96 LELDPRSAEAWYNLGNA 112 (136)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHH
Confidence 99999988877766554
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=1.4e-06 Score=80.62 Aligned_cols=122 Identities=12% Similarity=0.106 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHH-HHHHh
Q 005817 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKF-LMDMI 424 (676)
Q Consensus 347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~-~~~~~ 424 (676)
+.+...+++++...|+++.+|..+|..+.. .++++.|...|+++++..|... .|..+... ...
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-- 91 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLW-------------QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-- 91 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--
Confidence 345556666667777777788888887765 4789999999999999887654 55444443 222
Q ss_pred cCccccccCCCCChhhhhhH--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHH
Q 005817 425 APKKEETRDSELPSHVEHYI--SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLW 500 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~--~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW 500 (676)
.+.+ +.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...+
T Consensus 92 ----------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~ 152 (177)
T 2e2e_A 92 ----------------ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM-DLNSPRINRT 152 (177)
T ss_dssp ----------------TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTSCHH
T ss_pred ----------------cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH-hhCCCCccHH
Confidence 2555 899999999999999999999999999999999999999999999 8888875544
No 114
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.42 E-value=5.8e-06 Score=83.63 Aligned_cols=129 Identities=12% Similarity=0.011 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHHHhcCCCC------hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhH--H---
Q 005817 345 SDDMHDKILSDMQRDFLVD------PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMI--F--- 413 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~------~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~l--w--- 413 (676)
..+.+...+++++..+|.+ ..++..+|..+.. .+++++|+..|+++++..|.... |
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL-------------DGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 4566777777777766644 2456677777765 57899999999999998765331 1
Q ss_pred HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH-----HHHHHHHHHH--hcCCHHHHHHHHH
Q 005817 414 DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED-----IAHRYVTLYL--QLGKLDEARKLAA 486 (676)
Q Consensus 414 ~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~-----lw~~~~~l~~--~~~~~~~A~~l~~ 486 (676)
..|...-.-.. ..|+++.|+..|++++..+|.... .+...+..+. ..+++++|+..|+
T Consensus 200 ~~~~~lg~~~~---------------~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 200 DYFLKKGLCQL---------------AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHH---------------HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHH---------------HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 12322221111 147799999999999998887543 2333333333 4467999999999
Q ss_pred HHhhccCCChHHHHHH
Q 005817 487 KLCSGKLSDSVQLWLL 502 (676)
Q Consensus 487 ~al~~~~P~~~~lW~~ 502 (676)
+++ ...|....+|..
T Consensus 265 ~~~-~l~~~~~~~~~~ 279 (292)
T 1qqe_A 265 NFM-RLDKWKITILNK 279 (292)
T ss_dssp TSS-CCCHHHHHHHHH
T ss_pred cCC-ccHHHHHHHHHH
Confidence 988 777777666655
No 115
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.42 E-value=8.9e-05 Score=79.95 Aligned_cols=315 Identities=11% Similarity=0.034 Sum_probs=176.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C---chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC----CCHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N---GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN----LNVTA 210 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~---~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~----~~~~~ 210 (676)
....+..+|+++... ++...+.....+....| . ..+...|.+++.. ++..+...+....... ++.+.
T Consensus 18 ~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 18 DTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 356788999999876 56666666666655544 3 6889999999977 5667777777433222 37889
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCC
Q 005817 211 ARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGS 290 (676)
Q Consensus 211 Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (676)
|...|.+++...+ +..+..+..+...... ...+. ....|...... ..++
T Consensus 93 A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~--------~~~~~----------~a~~~~~~a~~--------~g~~--- 141 (452)
T 3e4b_A 93 AESLLKKAFANGE--GNTLIPLAMLYLQYPH--------SFPNV----------NAQQQISQWQA--------AGYP--- 141 (452)
T ss_dssp HHHHHHHHHHTTC--SSCHHHHHHHHHHCGG--------GCTTC----------CHHHHHHHHHH--------HTCT---
T ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHhCCC--------CCCCH----------HHHHHHHHHHH--------CCCH---
Confidence 9999999998554 3466666655433210 00000 00000000000 0000
Q ss_pred CCcchhhhhhhhhHH-----HhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChh
Q 005817 291 QPENMESQKSVDLFR-----EQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPK 365 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~-----~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~ 365 (676)
.........+. +.+.+.+..+++.|....|. .+..+-.++...+.....+.+...+.++....|.+..
T Consensus 142 ----~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 142 ----EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp ----THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred ----HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH
Confidence 00001111111 12556677788877776664 4444444554422112567788889999999999988
Q ss_pred hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhH
Q 005817 366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYI 444 (676)
Q Consensus 366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 444 (676)
.+..++..+..+ ....+++++|...|+++. |... .+........... ..+++
T Consensus 215 ~~~~Lg~~y~~g---------~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~---------------~~~d~ 267 (452)
T 3e4b_A 215 RVDSVARVLGDA---------TLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFP---------------ELGDV 267 (452)
T ss_dssp HHHHHHHHHTCG---------GGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG---------------GGCCH
T ss_pred HHHHHHHHHhCC---------CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC---------------CCCCH
Confidence 888999888542 123468999999999998 4332 2222222212111 13678
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCC
Q 005817 445 SHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-----KLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPS 519 (676)
Q Consensus 445 ~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~-----~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~ 519 (676)
++|...|++|...+ ++..+...+.++. .| ++++|...|++++ |.++..+.....++.. |.. .+
T Consensus 268 ~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~-G~g---~~- 335 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRR-GYL---GK- 335 (452)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHT-TTT---SS-
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHC-CCC---CC-
Confidence 99999999999764 7788888888887 55 9999999999987 7777777777766654 210 01
Q ss_pred hhchHHHHHHHHHHHhh
Q 005817 520 KADILSIFELLKCILTK 536 (676)
Q Consensus 520 ~~~~~~~~~~f~~Al~~ 536 (676)
.|.+++.+.|++|...
T Consensus 336 -~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 336 -VYPQKALDHLLTAARN 351 (452)
T ss_dssp -CCHHHHHHHHHHHHTT
T ss_pred -cCHHHHHHHHHHHHhh
Confidence 2577777777777653
No 116
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.42 E-value=2.2e-06 Score=85.03 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHHhcC--------CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcC--------CCChhhHHHHH
Q 005817 308 GLRVLQTIYSGAVEAL--------PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDF--------LVDPKYWDWLA 371 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~--------p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~--------p~~~~~w~~la 371 (676)
+.+.|...|++|++.. |.....+..+-.++.. .+..+.+...+++++... |....++..+|
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD---QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3445566666666532 3333344433333322 245778888888887664 44466788888
Q ss_pred HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc-----Cc-hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHH
Q 005817 372 RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV-----PS-SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYIS 445 (676)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~-----~~-~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 445 (676)
..+.. .+++++|...|++++... +. ......|...-.-.. ..|+++
T Consensus 93 ~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------~~g~~~ 144 (283)
T 3edt_B 93 VLYGK-------------RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ---------------NQGKAE 144 (283)
T ss_dssp HHHHT-------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------TTTCHH
T ss_pred HHHHH-------------hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH---------------HcCCHH
Confidence 88865 578999999999999863 21 112222222211111 147789
Q ss_pred HHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 446 HLLTVYEKAEAM--------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 446 ~a~~iye~al~~--------~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
+|...|++++.. .|.....+...+..+...|++++|...+++++
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987 55567789999999999999999999999998
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.7e-06 Score=73.76 Aligned_cols=113 Identities=14% Similarity=0.028 Sum_probs=91.1
Q ss_pred ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhh
Q 005817 363 DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVE 441 (676)
Q Consensus 363 ~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~ 441 (676)
+...|...|..++. .+++++|...|+++++..|... .|......... .
T Consensus 3 ~a~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~------------------~ 51 (126)
T 3upv_A 3 KAEEARLEGKEYFT-------------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK------------------L 51 (126)
T ss_dssp HHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------T
T ss_pred hHHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------h
Confidence 34567777777765 5789999999999999888654 44443333332 3
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccC------CChHHHHHHHHHHH
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKL------SDSVQLWLLRISVE 507 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~------P~~~~lW~~~i~l~ 507 (676)
|.++.|...|++++..+|.++..|...+..+...|++++|...+++++ ... |.+..++.......
T Consensus 52 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR-TKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHTTTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HhCcccCCchhHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999 778 88877777655443
No 118
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=5.1e-06 Score=70.16 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...|++++...|.+...|..++..+...| +..+...+++++...|.++.+|...+.... ..|+++.|...|+++
T Consensus 20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE-FLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 577899999999999999999999999988777 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRME 236 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e 236 (676)
+...|+++.+|..+..+.
T Consensus 99 ~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 99 LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHhh
Confidence 999999999988877654
No 119
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.36 E-value=7.1e-05 Score=78.03 Aligned_cols=265 Identities=8% Similarity=-0.071 Sum_probs=163.6
Q ss_pred Hcc-CchHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHH
Q 005817 170 QRK-NGRMKKVLAQVIRFHPKVPG-----VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVE-YLRMELTYLNK 242 (676)
Q Consensus 170 ~~~-~~~~~~~~~ral~~~P~~~~-----lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~-y~~~e~~~~~~ 242 (676)
..| ...+...+++++...|..+. ++...+.... ..|+++.|+..+++++...|.....+.. ++...+-.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~--- 101 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE--- 101 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---
Confidence 445 46789999999998886532 2333334443 5689999999999999987754332211 11111000
Q ss_pred HHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhc
Q 005817 243 LKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEA 322 (676)
Q Consensus 243 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~ 322 (676)
-.+..++++.|...|+++++.
T Consensus 102 -----------------------------------------------------------~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 102 -----------------------------------------------------------ILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp -----------------------------------------------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHCCCHHHHHHHHHHHHHH
Confidence 001124667788888888865
Q ss_pred CC--------CchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC-----hhhHHHHHHHhccccCCCCCCCcCcc
Q 005817 323 LP--------SSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD-----PKYWDWLARLKMTDSVSKDGTSEDIV 389 (676)
Q Consensus 323 ~p--------~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~-----~~~w~~la~~~~~~~~~~~~~~~~~~ 389 (676)
.+ .....+..+-.++. ..+..+.+...+++++...|.. ...+..++..+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~------------- 186 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLW---AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA------------- 186 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH-------------
T ss_pred HHHhccccCcHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH-------------
Confidence 32 11112222222222 2246778999999998877753 2346667777654
Q ss_pred hhHHHHHHHHHHHHhhccCc--h-hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc----H
Q 005817 390 PSQMQKAIQVYEEALKNVPS--S-MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT----E 462 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~--~-~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~----~ 462 (676)
.+++++|...+++++...+. . ..|...+........ ...|+++.|...+++++...|.. .
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-------------QMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH-------------HHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 57899999999999875332 1 233322111111000 01477899999999998765532 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
..+...+..+...|++++|...+++++ ...+. ...++..........| +.+++...|++++..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELN-ENARSLRLMSDLNRNLLLLNQLYWQAG----------RKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCcchhhHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHH
Confidence 456788999999999999999999988 53321 2235555555555555 367888888888765
Q ss_pred c
Q 005817 537 V 537 (676)
Q Consensus 537 ~ 537 (676)
.
T Consensus 323 ~ 323 (373)
T 1hz4_A 323 A 323 (373)
T ss_dssp H
T ss_pred h
Confidence 4
No 120
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.34 E-value=0.0012 Score=68.50 Aligned_cols=191 Identities=7% Similarity=-0.093 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHHhcCCCchhHHH---HHHHHHHHhcccCcHHHHHHHHHHHHhcCC--------CChhhHHHHHHHhc
Q 005817 307 QGLRVLQTIYSGAVEALPSSFNLRQ---RFFEIVEATNLAQSDDMHDKILSDMQRDFL--------VDPKYWDWLARLKM 375 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~~~~~~~---~~~~~~~~fe~~~~~~~a~~il~~~~~~~p--------~~~~~w~~la~~~~ 375 (676)
++++.|...|++|+...|.....+. .+..+...+...+....+...+++++...+ ....++..++..+.
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 4567788888888875443211111 111111111122456778888888776542 22334566777765
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye 452 (676)
. .++++.|...|++++...+.. .....|...-.-. ...|++++|...++
T Consensus 147 ~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~---------------~~~g~~~~A~~~l~ 198 (373)
T 1hz4_A 147 A-------------WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS---------------LARGDLDNARSQLN 198 (373)
T ss_dssp H-------------TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH---------------HHHTCHHHHHHHHH
T ss_pred H-------------hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH---------------HHcCCHHHHHHHHH
Confidence 5 578999999999999876531 1111221111110 12577999999999
Q ss_pred HHHHcC--CCcHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhhccCCCh----HHHHHHHHHHHHHhccccCCCCChh
Q 005817 453 KAEAMG--CLTEDIAHR-----YVTLYLQLGKLDEARKLAAKLCSGKLSDS----VQLWLLRISVEIRCVTRNSFSPSKA 521 (676)
Q Consensus 453 ~al~~~--p~~~~lw~~-----~~~l~~~~~~~~~A~~l~~~al~~~~P~~----~~lW~~~i~l~~~~~~~~~~~p~~~ 521 (676)
+++... +..+..|.. .+.++...|++++|...+++++ ...|.. ...+...+.+....|
T Consensus 199 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~la~~~~~~g---------- 267 (373)
T 1hz4_A 199 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLG---------- 267 (373)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHHHHHHHHHHHcC----------
Confidence 998652 222223332 3345678999999999999999 655542 334555566666655
Q ss_pred chHHHHHHHHHHHhh
Q 005817 522 DILSIFELLKCILTK 536 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~ 536 (676)
+.+++.+.+++++..
T Consensus 268 ~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 268 EFEPAEIVLEELNEN 282 (373)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 368888888888764
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=6e-06 Score=71.49 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....|...|++++...|++..+|...+..+...| +..+...|++++...|+++..|...+.... ..|+++.|...|++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI-AVKEYASALETLDA 97 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhCHHHHHHHHHH
Confidence 3678899999999999999999999999988887 588999999999999999999999999886 68899999999999
Q ss_pred HHHhC------CCCHHHHHHHHHHH
Q 005817 218 GLRVC------PTSEELWVEYLRME 236 (676)
Q Consensus 218 al~~~------p~~~~lW~~y~~~e 236 (676)
+++.. |.+..++..+.+..
T Consensus 98 al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 98 ARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999 88888877766543
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=4.2e-06 Score=72.12 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=96.5
Q ss_pred CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH 439 (676)
Q Consensus 361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~ 439 (676)
|.+...|..+|..+.. .++++.|...|++++...|... .|.........
T Consensus 9 ~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~----------------- 58 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMK-------------VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK----------------- 58 (131)
T ss_dssp HHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------------
T ss_pred hhhhHHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------------
Confidence 3445667777777765 4789999999999999877543 44443333332
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
.++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|...+.+....+
T Consensus 59 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 59 -LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL-ELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHT
T ss_pred -hhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCccchHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999 889999999988887776554
No 123
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=9.7e-06 Score=68.37 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=91.3
Q ss_pred hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH 442 (676)
Q Consensus 364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 442 (676)
...|..+|..+.. .++++.|...|++++...|... .|......... .+
T Consensus 4 ~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~~ 52 (118)
T 1elw_A 4 VNELKEKGNKALS-------------VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK------------------KG 52 (118)
T ss_dssp HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HT
T ss_pred HHHHHHHHHHHHH-------------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh------------------hc
Confidence 3456667776654 4789999999999999888643 44444433332 46
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
+++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+.
T Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 53 DYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL-KHEANNPQLKEGLQNME 116 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCCCHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999 88999998888776553
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.31 E-value=4e-06 Score=72.75 Aligned_cols=118 Identities=10% Similarity=-0.073 Sum_probs=94.6
Q ss_pred CCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChh
Q 005817 361 LVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSH 439 (676)
Q Consensus 361 p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~ 439 (676)
|.+...|..+|..+.. .++++.|...|+++++..|... .|.........
T Consensus 13 ~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----------------- 62 (133)
T 2lni_A 13 PDLALMVKNKGNECFQ-------------KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK----------------- 62 (133)
T ss_dssp SCHHHHHHHHHHHHHH-------------TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-----------------
T ss_pred cccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----------------
Confidence 4456677788887765 4778999999999999877543 44333222211
Q ss_pred hhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817 440 VEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (676)
Q Consensus 440 ~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (676)
.++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|.....+....
T Consensus 63 -~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 63 -LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL-DLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCGGGTHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999 88999888888877666543
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.30 E-value=2.3e-06 Score=88.66 Aligned_cols=132 Identities=10% Similarity=-0.022 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch----------------hH
Q 005817 349 HDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS----------------MI 412 (676)
Q Consensus 349 a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~----------------~l 412 (676)
+...++..+...|+....|..+|..++. .+++++|...|++++...|.. ..
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFK-------------EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHH-------------HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 3334445555567777888888888875 578999999999999988864 23
Q ss_pred HHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q 005817 413 FDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGK 492 (676)
Q Consensus 413 w~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~ 492 (676)
|......... .+++++|+..|++|+..+|.++..|...+..+...|++++|+..+++++ +.
T Consensus 199 ~~nla~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l 259 (336)
T 1p5q_A 199 HLNLAMCHLK------------------LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL-QL 259 (336)
T ss_dssp HHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH
Confidence 3222222222 4779999999999999999999999999999999999999999999999 89
Q ss_pred CCChHHHHHHHHHHHHHhcc
Q 005817 493 LSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 493 ~P~~~~lW~~~i~l~~~~~~ 512 (676)
.|.+...|..+..+....+.
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999988887776653
No 126
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1e-05 Score=71.59 Aligned_cols=116 Identities=11% Similarity=-0.058 Sum_probs=95.0
Q ss_pred CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch----hHHHHHHHHHHHHhcCccccccCCC
Q 005817 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS----MIFDLYTKFLMDMIAPKKEETRDSE 435 (676)
Q Consensus 360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~----~lw~~y~~~~~~~~~~~~~d~~~~~ 435 (676)
.|.+...|..+|..++. .++++.|...|+++++..|.. ..|.........
T Consensus 24 ~~~~~~~~~~~a~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~------------- 77 (148)
T 2dba_A 24 GASSVEQLRKEGNELFK-------------CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK------------- 77 (148)
T ss_dssp TCCCHHHHHHHHHHHHT-------------TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHHHH-------------hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-------------
Confidence 45566777888887765 578999999999999988874 234333333222
Q ss_pred CChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 436 LPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 436 ~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
.+++++|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++..+|..+..+.
T Consensus 78 -----~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 78 -----LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV-SLEPKNKVFQEALRNIS 143 (148)
T ss_dssp -----TTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHH
T ss_pred -----HccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 88999999988776654
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.29 E-value=1.4e-05 Score=68.00 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=92.6
Q ss_pred CCC-hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCCh
Q 005817 361 LVD-PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPS 438 (676)
Q Consensus 361 p~~-~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~ 438 (676)
|.. ...|..++..+.. .++++.|...|+++++..|... .|.........
T Consensus 5 ~~~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------------- 55 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYK-------------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK---------------- 55 (125)
T ss_dssp --CHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------------
T ss_pred ccccHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH----------------
Confidence 444 5678888877765 4789999999999998877543 44444433332
Q ss_pred hhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 439 HVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 439 ~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
.+.++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...+.....+..
T Consensus 56 --~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 56 --QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred --hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 889999888877665554
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=1.8e-05 Score=71.51 Aligned_cols=108 Identities=13% Similarity=0.031 Sum_probs=87.6
Q ss_pred hhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhh
Q 005817 365 KYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (676)
Q Consensus 365 ~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~ 443 (676)
..|..+|..++. .++++.|...|+++++..|... .|......... .++
T Consensus 14 ~~~~~~a~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~------------------~~~ 62 (166)
T 1a17_A 14 EELKTQANDYFK-------------AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------------TEC 62 (166)
T ss_dssp HHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------TTC
T ss_pred HHHHHHHHHHHH-------------ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH------------------cCC
Confidence 346666766654 4789999999999999887643 44444333332 367
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 444 ISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 444 ~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..+.
T Consensus 63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV-KVKPHDKDAKMKYQ 122 (166)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999 88999988885544
No 129
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.27 E-value=4.6e-05 Score=76.90 Aligned_cols=89 Identities=12% Similarity=-0.054 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHhhccCchh-------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHH
Q 005817 391 SQMQKAIQVYEEALKNVPSSM-------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTED 463 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~~~~~-------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~ 463 (676)
+++++|+..|++|++..|... .+.....+... .|++++|...|++++...|.++.
T Consensus 132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL------------------DGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHTTSSCTT
T ss_pred cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH------------------hCCHHHHHHHHHHHHHHHhcCCc
Confidence 679999999999998765321 12222222222 47799999999999998776543
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 464 -------IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 464 -------lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
.|...+..+...|++++|+..+++++ ...|....
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~ 234 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ-SEDPNFAD 234 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG-CC------
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCCC
Confidence 57788888999999999999999999 88887543
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=1.7e-05 Score=68.15 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...|++++...|.+...|..++..+...| ...+...|.+++...|.++..|...+.... ..|+++.|...|+++
T Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS-SLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 567899999999999999999999999988777 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~ 237 (676)
+...|.+..+|..++.+..
T Consensus 107 ~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHH
T ss_pred HhcCccchHHHHHHHHHHH
Confidence 9999999888887776654
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=5.5e-05 Score=77.64 Aligned_cols=240 Identities=8% Similarity=0.029 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh-HHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817 347 DMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS-QMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (676)
Q Consensus 347 ~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~-~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~ 424 (676)
+.+...++.++..+|++..+|...+..... .+ .++++...++.++...|.+. +|..= ......+
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-------------l~~~l~eEL~~~~~~L~~nPKny~aW~hR-~wlL~~l 136 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTS-------------LNKSLEDELRLMNEFAVQNLKSYQVWHHR-LLLLDRI 136 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------TTCCHHHHHHHHHHHHHTTCCCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHH-------------hhhhHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHh
Confidence 457778889999999999999888776543 23 48899999999999888765 67432 2222221
Q ss_pred cCccccccCCCCChhhhh-hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhccCCC
Q 005817 425 APKKEETRDSELPSHVEH-YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLD--------EARKLAAKLCSGKLSD 495 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~-~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~--------~A~~l~~~al~~~~P~ 495 (676)
. + .++.++..+++++..+|.+...|..=.-++...|.++ +++..+++++ ...|.
T Consensus 137 ~----------------~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I-~~dp~ 199 (349)
T 3q7a_A 137 S----------------PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML-RVDGR 199 (349)
T ss_dssp C----------------CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-HHCTT
T ss_pred c----------------CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH-HhCCC
Confidence 0 2 3578889999999999999999987666665555555 8999999999 88999
Q ss_pred hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhhHH----------------
Q 005817 496 SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQKHY---------------- 559 (676)
Q Consensus 496 ~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~~~---------------- 559 (676)
+...|..+..+..+.+.... +...+++..+.+.++|...|.+. +.|...-..+...+..
T Consensus 200 N~SAW~~R~~lL~~l~~~~~---~~~~~~eELe~~~~aI~~~P~n~--SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAET---SSRSLQDELIYILKSIHLIPHNV--SAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCC---CHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred CHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 99999999877765442100 01125777888899998877654 4687533334332211
Q ss_pred ---HHHHHHHHHHhhhhCCC---CCCCcchHHHHHHHHHHhcCHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 005817 560 ---FDKLVEIALISVAKDGG---GESGFSLPSAIINLVIQKDGIQQAREMYKRFL-ALPRPGLVLYQNCI 622 (676)
Q Consensus 560 ---~~~~~~~a~~~~~~~~~---~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al-~~~p~~~~l~~~~i 622 (676)
...+.+.+...+....+ ...++-.....++.+...|+.++|.++|+.+. +..|-...+|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 11222222211111100 00111112123444555677788888888775 44555566776554
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=3.5e-06 Score=72.90 Aligned_cols=87 Identities=18% Similarity=0.100 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...|...|++++...|++...|...+..+...| ...+...|++++...|+++..|...+.... ..|+++.|...|+++
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~-~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT-NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 577889999999999999999999999988877 578999999999999999999999998875 678999999999999
Q ss_pred HHhCCCCHH
Q 005817 219 LRVCPTSEE 227 (676)
Q Consensus 219 l~~~p~~~~ 227 (676)
++..|.+..
T Consensus 112 l~~~P~~~~ 120 (121)
T 1hxi_A 112 LLSQPQYEQ 120 (121)
T ss_dssp HC-------
T ss_pred HHhCcCCCC
Confidence 999997643
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=1.7e-05 Score=68.52 Aligned_cols=76 Identities=8% Similarity=-0.064 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 161 WFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 161 W~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
|...+..+...| ...+...|++++..+|+++..|...+.... ..|+.+.|...|+++++..|++..+|..++....
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455555555666 578999999999999999999999999886 6889999999999999999999988877665543
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.22 E-value=5.1e-05 Score=68.48 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
....+...|++++...|.+..+|...+..+...| +..+...|++++..+|.++..|...+.... ..|+++.|...|++
T Consensus 28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYET 106 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 3578899999999999999999999999988877 578999999999999999999999999886 68899999999999
Q ss_pred HHHhCCCCHHHHHHHHH
Q 005817 218 GLRVCPTSEELWVEYLR 234 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~ 234 (676)
++..+|.+..+|..+..
T Consensus 107 a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 107 VVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp HHHHSTTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHH
Confidence 99999999888755443
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.21 E-value=1.2e-05 Score=70.43 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=92.1
Q ss_pred cCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCC
Q 005817 359 DFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELP 437 (676)
Q Consensus 359 ~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~ 437 (676)
..|.++..|..+|..++. .++++.|...|++++...|... .|.........
T Consensus 4 ~~~~~~~~~~~~g~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--------------- 55 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFV-------------GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK--------------- 55 (137)
T ss_dssp --CCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------
T ss_pred CccccHHHHHHHHHHHHH-------------hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH---------------
Confidence 456778888899988876 5789999999999999888654 55444433333
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC-----hHHHHHHHHHH
Q 005817 438 SHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD-----SVQLWLLRISV 506 (676)
Q Consensus 438 ~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~-----~~~lW~~~i~l 506 (676)
.++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|+ +..++......
T Consensus 56 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 56 ---MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY-SLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCCTTHHHHHHHHH
T ss_pred ---hcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHChhHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999 76665 45555554433
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=1.2e-05 Score=69.62 Aligned_cols=97 Identities=18% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...|++++...|.+...|..++..+...+ .+.+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE-AMKDYTKAMDVYQKA 110 (133)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 567889999999999999999999999887776 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e~ 237 (676)
+...|.+..+|..+..+..
T Consensus 111 ~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 111 LDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHCGGGTHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHH
Confidence 9999998888887776654
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=7.2e-06 Score=74.83 Aligned_cols=111 Identities=13% Similarity=0.003 Sum_probs=90.4
Q ss_pred CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhh
Q 005817 362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHV 440 (676)
Q Consensus 362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~ 440 (676)
.+...|..+|..++. .+++++|+..|+++++..|... .|.........
T Consensus 9 ~~a~~~~~~g~~~~~-------------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------------------ 57 (164)
T 3sz7_A 9 PESDKLKSEGNAAMA-------------RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA------------------ 57 (164)
T ss_dssp HHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH------------------
T ss_pred hhHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH------------------
Confidence 345667788877765 5789999999999999888654 44443333332
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
.++++.|...|++++..+|.++..|...+..+...|++++|...+++++ ...|++...|....
T Consensus 58 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 58 SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI-EAEGNGGSDAMKRG 120 (164)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHSSSCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCchHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999 88898877665443
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=3.1e-05 Score=65.79 Aligned_cols=96 Identities=13% Similarity=0.185 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+..+|++++...|.+...|..++..+...| ...+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence 567889999999999999999999999988877 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH
Q 005817 219 LRVCPTSEELWVEYLRME 236 (676)
Q Consensus 219 l~~~p~~~~lW~~y~~~e 236 (676)
++..|.+..++..+....
T Consensus 104 ~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 104 LELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHH
Confidence 999999988887766543
No 139
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.20 E-value=4.6e-05 Score=79.93 Aligned_cols=239 Identities=14% Similarity=0.093 Sum_probs=148.7
Q ss_pred HHHHHHcc-CchHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 165 MEFCRQRK-NGRMKKVLAQVIRFHPK------VPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~ral~~~P~------~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
+.+....| +..+...|++|+...+. ...++...+.... ..|+++.|...+++|+...+.....-...+....
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33344445 57899999999987532 2356666677665 6789999999999999887753221111111111
Q ss_pred HHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhHHHhhhHHHHHHHH
Q 005817 238 TYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLFREQGLRVLQTIYS 317 (676)
Q Consensus 238 ~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~ 317 (676)
..+. .....++++.|...|+
T Consensus 187 ~lg~------------------------------------------------------------~y~~~~~~~~A~~~~~ 206 (378)
T 3q15_A 187 VIAG------------------------------------------------------------NYDDFKHYDKALPHLE 206 (378)
T ss_dssp HHHH------------------------------------------------------------HHHHTTCHHHHHHHHH
T ss_pred HHHH------------------------------------------------------------HHHHhCCHHHHHHHHH
Confidence 0000 0001136778888888
Q ss_pred HHHhcC---CCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHh-----cCCCChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817 318 GAVEAL---PSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQR-----DFLVDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (676)
Q Consensus 318 ~Al~~~---p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~-----~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~ 389 (676)
+|++.. ++.......+..+...+...+..+.|...+++++. ..|....++..+|..+..
T Consensus 207 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~------------- 273 (378)
T 3q15_A 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK------------- 273 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-------------
Confidence 888753 22222222222222222222467889999999888 777777788899988876
Q ss_pred hhHHHHHHHHHHHHhhccCc--hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPS--SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~--~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
.+++++|...|+++++..+. ...+...+......+.... + ...+.+|...+++. ...|...+++..
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~-~----------~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV-D----------ERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC-C----------HHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC-c----------HHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 57899999999999987553 2222222222222222111 0 13366777777762 122334567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 005817 468 YVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al 489 (676)
.+..+...|++++|...+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999998
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=9.9e-06 Score=73.89 Aligned_cols=92 Identities=9% Similarity=0.083 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...|++++...|.+..+|..++..+...| +..+...|++++..+|+++..|...+.... ..|+++.|...|+++
T Consensus 27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF-DMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 578899999999999999999999999988887 588999999999999999999999999986 688999999999999
Q ss_pred HHhCCCCHHHHHHH
Q 005817 219 LRVCPTSEELWVEY 232 (676)
Q Consensus 219 l~~~p~~~~lW~~y 232 (676)
++..|++...|...
T Consensus 106 l~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 106 IEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHSSSCCHHHHH
T ss_pred HHhCCCchHHHHHH
Confidence 99999988766443
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.5e-05 Score=69.86 Aligned_cols=97 Identities=6% Similarity=-0.022 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNG 218 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ra 218 (676)
...+...|++++...|.+...|..++..+...| +..+...|++++...|.++..|...+.... ..|+++.|...|+++
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL-EMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 578899999999999999999999999988877 578999999999999999999999999886 688999999999999
Q ss_pred HHhCCC-----CHHHHHHHHHHHH
Q 005817 219 LRVCPT-----SEELWVEYLRMEL 237 (676)
Q Consensus 219 l~~~p~-----~~~lW~~y~~~e~ 237 (676)
+...|+ +..++..+.....
T Consensus 104 ~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 104 YSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHChhHHHHHHHHHHHHHHHHHH
Confidence 999997 6777777766544
No 142
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=1.2e-05 Score=67.24 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=87.4
Q ss_pred CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCCh
Q 005817 360 FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPS 438 (676)
Q Consensus 360 ~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~ 438 (676)
.|++...|..+|..+.. .+++++|...|+++++..|... .|.........
T Consensus 2 ~p~~~~~~~~~~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~---------------- 52 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD-------------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN---------------- 52 (112)
T ss_dssp CCSSTTGGGGHHHHHHS-------------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----------------
T ss_pred CCCcHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH----------------
Confidence 57788888888888765 4789999999999999887643 45444433332
Q ss_pred hhhhhHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccCCCh
Q 005817 439 HVEHYISHLLTVYEKAEAMGCL--TEDIAHRYVTLYLQL-GKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 439 ~~~~~~~~a~~iye~al~~~p~--~~~lw~~~~~l~~~~-~~~~~A~~l~~~al~~~~P~~ 496 (676)
.++++.|...|++++..+|. +...|...+..+... |++++|...+.+++ ...|.+
T Consensus 53 --~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-~~~p~~ 110 (112)
T 2kck_A 53 --LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK-LEHHHH 110 (112)
T ss_dssp --TTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG-GGCCCC
T ss_pred --ccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh-hcccCC
Confidence 36789999999999999999 999999999999999 99999999999999 777764
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.13 E-value=0.00061 Score=71.17 Aligned_cols=155 Identities=8% Similarity=-0.075 Sum_probs=109.4
Q ss_pred cHHHHHHHHHHHHhcCC---C---ChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---h--HH
Q 005817 345 SDDMHDKILSDMQRDFL---V---DPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---M--IF 413 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p---~---~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~--lw 413 (676)
..+.+...+++++...+ + ...++..+|..+.. .++++.|...|++|++..+.. . ..
T Consensus 116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-------------MKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-------------cCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 56677777777766532 2 23456677777754 578899999999999764321 1 22
Q ss_pred HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC---C---cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817 414 DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC---L---TEDIAHRYVTLYLQLGKLDEARKLAAK 487 (676)
Q Consensus 414 ~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p---~---~~~lw~~~~~l~~~~~~~~~A~~l~~~ 487 (676)
..+...-.-. ...|.+++|...|++|+...+ . ....+...+..+...|++++|...+++
T Consensus 183 ~~~~~lg~~y---------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 183 QSLFVIAGNY---------------DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2221111111 124778999999999997521 1 245678889999999999999999999
Q ss_pred Hhhc-----cCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 488 LCSG-----KLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 488 al~~-----~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
++ . ..|.....+...+......| +.+++.+.|++|+...+
T Consensus 248 al-~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 248 AA-KVSREKVPDLLPKVLFGLSWTLCKAG----------QTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HH-HHHHHHCGGGHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHhhCChhHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHH
Confidence 99 7 67777788888888777766 47999999999998653
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.12 E-value=1.3e-05 Score=79.74 Aligned_cols=126 Identities=10% Similarity=-0.169 Sum_probs=93.6
Q ss_pred cHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHH
Q 005817 345 SDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLM 421 (676)
Q Consensus 345 ~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~ 421 (676)
.++.+..+++.+....|++. ..+.++..++. .++++.|+..|+.+++..+.. ..+ .|+....
T Consensus 117 ~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~-------------~~r~~dA~~~l~~a~~~~d~~~~~~a~-~~LG~al 181 (282)
T 4f3v_A 117 NYADAMEALEAAPVAGSEHL-VAWMKAVVYGA-------------AERWTDVIDQVKSAGKWPDKFLAGAAG-VAHGVAA 181 (282)
T ss_dssp CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH-------------TTCHHHHHHHHTTGGGCSCHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH-------------cCCHHHHHHHHHHhhccCCcccHHHHH-HHHHHHH
Confidence 56778888888777777777 66667766665 578999999998776543221 111 2222222
Q ss_pred HHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC--CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 422 DMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG--CL-TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 422 ~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~--p~-~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
. ..|..+.|...|++++... |. .++.++..+..+.+.|+.++|+.++++++ ...|. ..
T Consensus 182 ~-----------------~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~-a~~P~-~~ 242 (282)
T 4f3v_A 182 A-----------------NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ-TTHPE-PK 242 (282)
T ss_dssp H-----------------HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSCC-HH
T ss_pred H-----------------HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCc-HH
Confidence 2 1477899999999998653 55 67899999999999999999999999999 88999 88
Q ss_pred HHHHHH
Q 005817 499 LWLLRI 504 (676)
Q Consensus 499 lW~~~i 504 (676)
.|....
T Consensus 243 ~~~aL~ 248 (282)
T 4f3v_A 243 VAAALK 248 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.1e-05 Score=69.52 Aligned_cols=96 Identities=8% Similarity=-0.093 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGD---IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~---~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~ 215 (676)
...+...|++++...|++ ..+|..++..+...+ +..+...|++++..+|.++..|...+.... ..|+++.|...|
T Consensus 44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~ 122 (148)
T 2dba_A 44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE-KLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 577899999999999987 889999998887777 578999999999999999999999999886 678999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q 005817 216 QNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 216 ~ral~~~p~~~~lW~~y~~~e 236 (676)
++++...|++..+|..+.++.
T Consensus 123 ~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 123 QRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999888777653
No 146
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=2e-05 Score=70.84 Aligned_cols=90 Identities=9% Similarity=-0.046 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-C----------chHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-N----------GRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHN- 205 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~----------~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~- 205 (676)
.....+...|++++...|.+.+.|..+...+...+ . +.+...|++||.+.|+.+..|...+.......
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999999999776654 2 48999999999999999999999988775332
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCCHH
Q 005817 206 ---------LNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 206 ---------~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
|+++.|...|++|+..+|++..
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 4899999999999999999853
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.05 E-value=6.8e-05 Score=71.12 Aligned_cols=120 Identities=13% Similarity=-0.026 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYV 469 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~ 469 (676)
.+++++|...|++++. |....|......... .|++++|...|++++..+|.++..|...+
T Consensus 19 ~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~lg 78 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQD--PHSRICFNIGCMYTI------------------LKNMTEAEKAFTRSINRDKHLAVAYFQRG 78 (213)
T ss_dssp TTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcC--CChHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 4789999999999973 233344333332222 47799999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCChH----------------HHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHH
Q 005817 470 TLYLQLGKLDEARKLAAKLCSGKLSDSV----------------QLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCI 533 (676)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~----------------~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~A 533 (676)
..+...|++++|...+++++ ...|.+. ..|...+......| +.+++.+.|+++
T Consensus 79 ~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a 147 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEAL-IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE----------EWKKAEEQLALA 147 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT----------CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH-HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc----------CHHHHHHHHHHH
Confidence 99999999999999999999 7677654 88888888887766 479999999999
Q ss_pred HhhcChh
Q 005817 534 LTKVSAL 540 (676)
Q Consensus 534 l~~~~~~ 540 (676)
+...|..
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9877654
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=7.8e-05 Score=76.95 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~ 203 (676)
...|...|++|+...|.+ ..+|..++..+.+.| +..+...|++++...|+++..|...+....
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~- 241 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL- 241 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-
Confidence 678899999999999999 699999999988887 589999999999999999999999999886
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 005817 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKA 245 (676)
Q Consensus 204 ~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~ 245 (676)
..|+++.|+..|+++++..|++..+|..+..+.........+
T Consensus 242 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999888877665444443
No 149
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=7.7e-05 Score=64.33 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCCHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDI---ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV---PGVWIYAAAWEFDHNLNVTAAR 212 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~---~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~---~~lW~~~a~~e~~~~~~~~~Ar 212 (676)
...+...|++++..+|++. ..|...+......| +..+...|++++..+|++ +..+...+.... ..|+++.|.
T Consensus 18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~-~~g~~~~A~ 96 (129)
T 2xev_A 18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY-GEGKNTEAQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HcCCHHHHH
Confidence 5778999999999999998 78988888887777 588999999999999999 888999998886 688999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 005817 213 ALMQNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 213 ~~~~ral~~~p~~~~lW~~y~~~e 236 (676)
..|++++...|+++.++....++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 97 QTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999887766655554
No 150
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=7.7e-05 Score=64.32 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc---H
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM----IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT---E 462 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~----lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~---~ 462 (676)
.+++++|...|+++++..|+.. .|......... .|+++.|...|++++..+|.+ +
T Consensus 15 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA------------------TRNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH------------------hccHHHHHHHHHHHHHHCCCCcccH
Confidence 4789999999999999887644 23222222221 477999999999999999998 8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
..+...+..+...|++++|...+++++ ..+|++...+.....+..
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVA-TQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCChHHHHHHHHHHH
Confidence 889999999999999999999999999 889998877766554443
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00026 Score=78.45 Aligned_cols=169 Identities=11% Similarity=-0.019 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-----------NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL-- 206 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-----------~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~-- 206 (676)
..+|...|++++...|.+..+|..-.......+ ...+...+++++..+|.++.+|..-+-.. ...+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l-~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL-SRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcccc
Confidence 367899999999999999999987777765543 35678999999999999999999876655 5677
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCC
Q 005817 207 NVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVEN 286 (676)
Q Consensus 207 ~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (676)
+++.|...+++++..+|.+..+|..-.-..... +
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-----------~----------------------------------- 157 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQA-----------A----------------------------------- 157 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------C-----------------------------------
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-----------C-----------------------------------
Confidence 679999999999999999999997654322110 0
Q ss_pred CCCCCCcchhhhhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhc-c----------cCcHHHHHHHHHH
Q 005817 287 TDGSQPENMESQKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATN-L----------AQSDDMHDKILSD 355 (676)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe-~----------~~~~~~a~~il~~ 355 (676)
...+.+...++++++..|.+...|.....++.... . ....+.+...+++
T Consensus 158 --------------------~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 158 --------------------VAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp --------------------CCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred --------------------CChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 02345678889999999999888877665555431 1 0124567778899
Q ss_pred HHhcCCCChhhHHHHHHHhc
Q 005817 356 MQRDFLVDPKYWDWLARLKM 375 (676)
Q Consensus 356 ~~~~~p~~~~~w~~la~~~~ 375 (676)
++...|++..+|..+.-..-
T Consensus 218 ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 218 AFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHCSSCSHHHHHHHHHHS
T ss_pred HHhhCCCCccHHHHHHHHHh
Confidence 99999999999998876653
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.99 E-value=1.2e-05 Score=68.83 Aligned_cols=89 Identities=19% Similarity=0.098 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCC
Q 005817 441 EHYISHLLTVYEKAEAM---GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFS 517 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~---~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~ 517 (676)
.|.+++|...|++++.. +|.++..|...+..+...|++++|...+++++ +..|+++.+|..++......|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~g------ 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFPNHQALRVFYAMVLYNLG------ 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHcC------
Confidence 36678899999999998 57788899999999999999999999999999 899999999999998888776
Q ss_pred CChhchHHHHHHHHHHHhhcChh
Q 005817 518 PSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 518 p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
+.+++.+.|++++...|..
T Consensus 76 ----~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 76 ----RYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp ----CHHHHHHHHHHHHHHHCCC
T ss_pred ----CHHHHHHHHHHHHHhCCCc
Confidence 4799999999999877654
No 153
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=1.1e-05 Score=68.98 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817 140 VARILEIYRLAVMR---FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 140 ~~~~~~iyeral~~---~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~ 215 (676)
...+...|++++.. .|.+...|...+..+...| +..+...|++++..+|+++.+|..++.... ..|+++.|...|
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~ 84 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY-NLGRYEQGVELL 84 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 34567899999998 6988999999999988887 589999999999999999999999999886 678999999999
Q ss_pred HHHHHhCCCCHHHH
Q 005817 216 QNGLRVCPTSEELW 229 (676)
Q Consensus 216 ~ral~~~p~~~~lW 229 (676)
++++...|+++.+.
T Consensus 85 ~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 85 LKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHCCCHHHH
T ss_pred HHHHHhCCCcHHHH
Confidence 99999999987654
No 154
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.97 E-value=0.00038 Score=73.33 Aligned_cols=237 Identities=11% Similarity=0.040 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQN 217 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~r 217 (676)
...+|...+++. +...+|...++...+.+ ...|...|.++ .++..|...+.-. +..|+++.|+.+++.
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~a-e~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHH-HhCCCHHHHHHHHHH
Confidence 367777888777 23469988888877766 56777888764 3556676666655 467788888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
+.+..|+ +.+..+++......+
T Consensus 87 ark~~~~-~~i~~~Li~~Y~Klg--------------------------------------------------------- 108 (449)
T 1b89_A 87 ARKKARE-SYVETELIFALAKTN--------------------------------------------------------- 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCcc-chhHHHHHHHHHHhC---------------------------------------------------------
Confidence 8876544 344444333222110
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccc
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTD 377 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~ 377 (676)
++..+..+|+ .|+. ..|..+-+ .|-..+.++.|...|.++ ..|..+|..+..
T Consensus 109 ----------~l~e~e~f~~-----~pn~-~a~~~IGd---~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~- 160 (449)
T 1b89_A 109 ----------RLAELEEFIN-----GPNN-AHIQQVGD---RCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH- 160 (449)
T ss_dssp ----------CHHHHTTTTT-----CC--------------------CTTTHHHHHHHT--------TCHHHHHHHHHT-
T ss_pred ----------CHHHHHHHHc-----CCcH-HHHHHHHH---HHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH-
Confidence 1111111111 1211 12222211 222123455666666654 356677776654
Q ss_pred cCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc
Q 005817 378 SVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM 457 (676)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~ 457 (676)
.++++.|.+.|+++ .....|...+..+.. .|..+.|...... +.
T Consensus 161 ------------Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~------------------~~ef~lA~~~~l~-L~- 204 (449)
T 1b89_A 161 ------------LGEYQAAVDGARKA----NSTRTWKEVCFACVD------------------GKEFRLAQMCGLH-IV- 204 (449)
T ss_dssp ------------TTCHHHHHHHHHHH----TCHHHHHHHHHHHHH------------------TTCHHHHHHTTTT-TT-
T ss_pred ------------hccHHHHHHHHHHc----CCchhHHHHHHHHHH------------------cCcHHHHHHHHHH-HH-
Confidence 57899999999999 244578777666665 2446666444332 22
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 458 GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 458 ~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
..|+-....+.++.+.|.+++|..+++.++ +.-|....+|....-++.+..
T Consensus 205 --~~ad~l~~lv~~Yek~G~~eEai~lLe~aL-~le~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 205 --VHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFK 255 (449)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTCCHHHHHHHHHHHHTTC
T ss_pred --hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHhcC
Confidence 344545568888999999999999999999 777889999999988887764
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.96 E-value=6.5e-05 Score=74.58 Aligned_cols=196 Identities=9% Similarity=-0.111 Sum_probs=130.2
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhccCCC------h------------
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRY-------VTLYLQLGKLDEARKLAAKLCSGKLSD------S------------ 496 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~-------~~l~~~~~~~~~A~~l~~~al~~~~P~------~------------ 496 (676)
++...|+..|.+++..+|..++.|+.. ...+...+...++...+.+++ +..|. +
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l-~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV-QISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT-TCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh-cCChhhhhhhhccCCccccccccc
Confidence 568899999999999999999999999 688887777788888888888 64442 1
Q ss_pred ---HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhh
Q 005817 497 ---VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMALKFFMNQK-HYFDKLVEIALISVA 572 (676)
Q Consensus 497 ---~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~-~~~~~~~~~a~~~~~ 572 (676)
.+++..|+.++...+. .+++.++|...+..-|.. . ..|...+-++...+ +.+...|+.+.....
T Consensus 99 ~~r~dl~LayA~~L~~~g~----------y~eA~~~l~~~~~~~p~~-~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN----------YADAMEALEAAPVAGSEH-L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC----------HHHHHHHHTSSCCTTCHH-H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred CCHhHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCch-H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 5788889998888764 788888888776655533 2 44554332332222 233333332211000
Q ss_pred hCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHh
Q 005817 573 KDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALP--RP-GLVLYQNCIELENNLASVGDKDSLVNARKLFESALA 649 (676)
Q Consensus 573 ~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~--p~-~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~ 649 (676)
+.. .....-.....+..+|.+++|...|++++..+ |. ....+......-..+| ..+.|+.+|++++.
T Consensus 167 ~~~----~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG------r~deA~~~l~~a~a 236 (282)
T 4f3v_A 167 KFL----AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG------NESAAVALLEWLQT 236 (282)
T ss_dssp HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred ccc----HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence 000 01122122345778999999999999998655 33 3334444444444566 78999999999999
Q ss_pred hCCCCchHHHHH
Q 005817 650 TYDQNTSLWRDY 661 (676)
Q Consensus 650 ~~~~~~~lW~~y 661 (676)
..|. +.+|...
T Consensus 237 ~~P~-~~~~~aL 247 (282)
T 4f3v_A 237 THPE-PKVAAAL 247 (282)
T ss_dssp HSCC-HHHHHHH
T ss_pred cCCc-HHHHHHH
Confidence 9998 7776543
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=9.3e-05 Score=69.63 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDI----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~ 202 (676)
...|...|++++...|.+. .+|..++..+...| +..+...|++++...|.++..|...+....
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 133 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM 133 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5778999999999999987 89999998888877 588999999999999999999999999886
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 005817 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTY 239 (676)
Q Consensus 203 ~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~ 239 (676)
..|+++.|...|++++...|++..+|..+..+....
T Consensus 134 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 134 -YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp -HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 678999999999999999999999998888776554
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=5.7e-05 Score=62.86 Aligned_cols=85 Identities=9% Similarity=-0.011 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhC-CCHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPK--VPGVWIYAAAWEFDHN-LNVTAARALM 215 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~--~~~lW~~~a~~e~~~~-~~~~~Ar~~~ 215 (676)
...+...|++++...|.+...|..++......| .+.+...|++++...|. ++.+|...+.... .. |+++.|...|
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~ 100 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR-YIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT-TCSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH-HHhCCHHHHHHHH
Confidence 577899999999999999999999999988877 57899999999999999 9999999999986 78 8999999999
Q ss_pred HHHHHhCCCC
Q 005817 216 QNGLRVCPTS 225 (676)
Q Consensus 216 ~ral~~~p~~ 225 (676)
.+++...|.+
T Consensus 101 ~~~~~~~p~~ 110 (112)
T 2kck_A 101 ARAKLEHHHH 110 (112)
T ss_dssp HHHGGGCCCC
T ss_pred HHHhhcccCC
Confidence 9999999975
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=2.4e-05 Score=84.55 Aligned_cols=131 Identities=9% Similarity=0.024 Sum_probs=97.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-------------HHHHHHH
Q 005817 352 ILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-------------IFDLYTK 418 (676)
Q Consensus 352 il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-------------lw~~y~~ 418 (676)
.++......|+....|..++..++. .++++.|...|++|++..|... ....|..
T Consensus 256 ~~~~~~~~~~~~a~~~~~~G~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 256 SWEMDTKEKLEQAAIVKEKGTVYFK-------------GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 3344444556666778888888765 5789999999999999877641 0112222
Q ss_pred HHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 419 FLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 419 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
.-.-.. ..++++.|+..|++|+..+|.++..|...+..+...|++++|+..+++++ +..|++..
T Consensus 323 la~~~~---------------~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~l~P~~~~ 386 (457)
T 1kt0_A 323 LAMCYL---------------KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKA 386 (457)
T ss_dssp HHHHHH---------------HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC----C
T ss_pred HHHHHH---------------HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHH
Confidence 211111 24779999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHhc
Q 005817 499 LWLLRISVEIRCV 511 (676)
Q Consensus 499 lW~~~i~l~~~~~ 511 (676)
.|..+..+....+
T Consensus 387 a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 387 ARLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988887776654
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.90 E-value=7.1e-05 Score=67.88 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817 139 GVARILEIYRLAVMR------------------FKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAA 199 (676)
Q Consensus 139 ~~~~~~~iyeral~~------------------~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~ 199 (676)
....|...|++|+.. .|.+..+|...+..+.+.| +..+...+++++...|+++..|...+.
T Consensus 26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 105 (162)
T 3rkv_A 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAK 105 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 357889999999998 6777789999888888877 588999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005817 200 WEFDHNLNVTAARALMQNGLRVCPTSE-ELWVEYLRME 236 (676)
Q Consensus 200 ~e~~~~~~~~~Ar~~~~ral~~~p~~~-~lW~~y~~~e 236 (676)
... ..|+++.|...|++++...|+++ .++..+..+.
T Consensus 106 ~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 106 ARI-AAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHH-HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHH-HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 886 68899999999999999999987 5565555443
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=1.5e-05 Score=82.52 Aligned_cols=137 Identities=13% Similarity=0.032 Sum_probs=75.7
Q ss_pred hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchhHH---------------HHHHHHHHHHhcCcc
Q 005817 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSMIF---------------DLYTKFLMDMIAPKK 428 (676)
Q Consensus 364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~lw---------------~~y~~~~~~~~~~~~ 428 (676)
...|..++..++. .++++.|...|++|+...|....+ ..|...-.-..
T Consensus 179 a~~~~~~g~~~~~-------------~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~---- 241 (338)
T 2if4_A 179 ADRRKMDGNSLFK-------------EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI---- 241 (338)
T ss_dssp HHHHHHHHHHTCS-------------SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH----
Confidence 3446666766654 467899999999999987764311 01211111111
Q ss_pred ccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 429 EETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 429 ~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
..+.++.|+..|++++..+|.++..|...+..+...|++++|+..+++++ ...|++..+|..+..+..
T Consensus 242 -----------~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 242 -----------KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ-KYAPDDKAIRRELRALAE 309 (338)
T ss_dssp -----------TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-C-----------------
T ss_pred -----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHH
Confidence 14678999999999999999999999999999999999999999999999 899999888887766544
Q ss_pred HhccccCCCCChhchHHHHHHHHHHHhhcC
Q 005817 509 RCVTRNSFSPSKADILSIFELLKCILTKVS 538 (676)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~ 538 (676)
.... ..++.++.|.+++...|
T Consensus 310 ~~~~---------~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 310 QEKA---------LYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ------------------------------
T ss_pred HHHH---------HHHHHHHHHHHhhCCCC
Confidence 3221 24566677888876554
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=7.5e-05 Score=64.04 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=85.9
Q ss_pred hhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhh
Q 005817 364 PKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEH 442 (676)
Q Consensus 364 ~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~ 442 (676)
+..|..+|..+.. .++++.|...|+++++..|... .|......... .+
T Consensus 4 ~~~~~~l~~~~~~-------------~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~------------------~~ 52 (131)
T 1elr_A 4 ALKEKELGNDAYK-------------KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE------------------KG 52 (131)
T ss_dssp HHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------HT
T ss_pred HHHHHHHHHHHHH-------------hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH------------------hc
Confidence 4567777777765 4789999999999999877543 44333333322 46
Q ss_pred hHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 443 YISHLLTVYEKAEAMGCLT-------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~-------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
+++.|...|++++...|.+ +.+|...+..+...|++++|...+++++ ...| +...+.....+..
T Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CHHHHHHHHHHHH
Confidence 7899999999999987765 8899999999999999999999999999 7777 5666666554443
No 162
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=4.4e-05 Score=64.76 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (676)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~ 221 (676)
+...|++++...|.+...|..++..+...| +..+...|++++...|.++..|...+.... ..|+.+.|+..|++++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ-GQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999988877 578999999999999999999999999886 678999999999999999
Q ss_pred CCC
Q 005817 222 CPT 224 (676)
Q Consensus 222 ~p~ 224 (676)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 884
No 163
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00039 Score=64.26 Aligned_cols=140 Identities=12% Similarity=0.122 Sum_probs=98.5
Q ss_pred HHHHHhhHHhHHHhhC---CCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHH-HH
Q 005817 72 SEIVKQRRKFEYRLKR---PSPL-KQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARIL-EI 146 (676)
Q Consensus 72 ~~i~~~R~~fE~~l~~---~~~~-~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 146 (676)
.++...|..||..|.. .... +..|++||+|=.... |.. ......... .+
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y--------------P~g------------~~~~~s~L~~~l 59 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY--------------IEV------------DSESGQEVLRST 59 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--------------HHH------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC--------------CCC------------CCcchhchHHHH
Confidence 6678899999999998 3333 577999999854321 100 000122344 79
Q ss_pred HHHHHHhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q 005817 147 YRLAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALM 215 (676)
Q Consensus 147 yeral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~ 215 (676)
++||++.|-++ +++|+.|++++..........+|.-+.... -....+|..+|.+. +..|++..|..+|
T Consensus 60 LErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy 138 (202)
T 3esl_A 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLL-ENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 99999877654 479999999962111235678888877643 34789999999997 6889999999999
Q ss_pred HHHHHhCCCC-HHHHHHHHHHHHH
Q 005817 216 QNGLRVCPTS-EELWVEYLRMELT 238 (676)
Q Consensus 216 ~ral~~~p~~-~~lW~~y~~~e~~ 238 (676)
++|++.+..- ..|-..|-.|+.+
T Consensus 139 ~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 139 ELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHHHHHHHH
Confidence 9999987532 3566666666654
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.87 E-value=0.00015 Score=68.22 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHhhccCchh-----------------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-----------------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYE 452 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-----------------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye 452 (676)
.+++++|...|++++...|... .|........ ..++++.|...|+
T Consensus 51 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------------------~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN------------------KNKDYPKAIDHAS 112 (198)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH------------------HhcCHHHHHHHHH
Confidence 4789999999999998766432 2222221111 1467999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 453 KAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 453 ~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
+++..+|.++..|...+..+...|++++|...+++++ ...|.+..+|.....+....+
T Consensus 113 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA-SLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 889999999888777665543
No 165
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.83 E-value=5.5e-05 Score=79.65 Aligned_cols=277 Identities=11% Similarity=0.023 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcC
Q 005817 308 GLRVLQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSED 387 (676)
Q Consensus 308 ~~~~a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~ 387 (676)
+++.|..++++. +.+++|..+...+..- +..+.|...+.+ .+++..|...+....
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~---g~~~eAIdsfik-----a~D~~~y~~V~~~ae------------ 72 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQK---GMVKEAIDSYIK-----ADDPSSYMEVVQAAN------------ 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHc---CCHHHHHHHHHc-----CCCHHHHHHHHHHHH------------
Confidence 567788888776 2235777665544322 223444444433 234445555544332
Q ss_pred cchhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH
Q 005817 388 IVPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR 467 (676)
Q Consensus 388 ~~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~ 467 (676)
..++++.|+..|+.+.+..+...+....+....+ .|++..+...++ .| +...|..
T Consensus 73 -~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K------------------lg~l~e~e~f~~-----~p-n~~a~~~ 127 (449)
T 1b89_A 73 -TSGNWEELVKYLQMARKKARESYVETELIFALAK------------------TNRLAELEEFIN-----GP-NNAHIQQ 127 (449)
T ss_dssp -------------------------------------------------------CHHHHTTTTT-----CC--------
T ss_pred -hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH------------------hCCHHHHHHHHc-----CC-cHHHHHH
Confidence 2578888999888888764432222111111111 133444444442 13 3346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHH
Q 005817 468 YVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWL 547 (676)
Q Consensus 468 ~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~ 547 (676)
-++.+...|.+++|+..|.++- -|...+..+.+.|+ .+++.+.|.+|- ....|.
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a~---------n~~~LA~~L~~Lg~----------yq~AVea~~KA~-------~~~~Wk 181 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE----------YQAAVDGARKAN-------STRTWK 181 (449)
T ss_dssp ---------CTTTHHHHHHHTT---------CHHHHHHHHHTTTC----------HHHHHHHHHHHT-------CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhh---------hHHHHHHHHHHhcc----------HHHHHHHHHHcC-------CchhHH
Confidence 7777777788888887777652 47777777776653 677777777761 234576
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 005817 548 MALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENN 627 (676)
Q Consensus 548 ~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~ 627 (676)
..+.-....++ ++.+ .. +.-... ..++-....+.+..+.|.+++|..++++++.+.+....+|..+.-+..+
T Consensus 182 ~v~~aCv~~~e-f~lA----~~-~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 182 EVCFACVDGKE-FRLA----QM-CGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHTTC-HHHH----HH-TTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCc-HHHH----HH-HHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 54433332222 2222 11 111111 0111122345666788899999999999998888888888887777666
Q ss_pred ccCCCCccchHHHHHHHHHHHhhCC-----CCchHHHHHHHHHhhcCCcc
Q 005817 628 LASVGDKDSLVNARKLFESALATYD-----QNTSLWRDYYSTETKVSFSL 672 (676)
Q Consensus 628 ~~~~~~~~~~~~aR~lye~al~~~~-----~~~~lW~~y~~fE~~~G~~~ 672 (676)
..+ +.+...-++|...+...+ .+..+|..+.-+=.++|+.+
T Consensus 254 y~p----~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 254 FKP----QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TCH----HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred cCH----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 542 256677777877777766 56788888887777777755
No 166
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=0.00021 Score=60.45 Aligned_cols=83 Identities=11% Similarity=-0.073 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHH
Q 005817 446 HLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILS 525 (676)
Q Consensus 446 ~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~ 525 (676)
.+...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..++......| +.++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g----------~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDPTYSVAWKWLGKTLQGQG----------DRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHT----------CHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHHcC----------CHHH
Confidence 46788999999999999999999999999999999999999999 889999999999998888776 4789
Q ss_pred HHHHHHHHHhhcCh
Q 005817 526 IFELLKCILTKVSA 539 (676)
Q Consensus 526 ~~~~f~~Al~~~~~ 539 (676)
+...|++++...|.
T Consensus 72 A~~~~~~al~~~~~ 85 (115)
T 2kat_A 72 ARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 99999999986553
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.82 E-value=0.00021 Score=61.14 Aligned_cols=97 Identities=8% Similarity=0.037 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCCHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKV-------PGVWIYAAAWEFDHNLNVTA 210 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~-------~~lW~~~a~~e~~~~~~~~~ 210 (676)
....+...|++++...|.+..+|..++......| +..+...|++++...|.+ +.+|...+.... ..|+++.
T Consensus 19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~ 97 (131)
T 1elr_A 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF-KEEKYKD 97 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-HhccHHH
Confidence 3578899999999999999999999999888777 578999999999999877 889999998886 6889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 211 ARALMQNGLRVCPTSEELWVEYLRMEL 237 (676)
Q Consensus 211 Ar~~~~ral~~~p~~~~lW~~y~~~e~ 237 (676)
|...|++++...| ++.++..+..+..
T Consensus 98 A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 98 AIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 9999999999999 5777777766543
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.0015 Score=72.39 Aligned_cols=182 Identities=12% Similarity=0.083 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (676)
Q Consensus 346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~ 424 (676)
.+.+...++.++..+|++..+|...+.......... ........++++...|+++++..|... .|..= .+....+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~---~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR-~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEK---SPEESAALVKAELGFLESCLRVNPKSYGTWHHR-CWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHTC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhccccc---chhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHc
Confidence 457788899999999999999998876654311000 000112238899999999999888765 66432 2222221
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhccCCChHHHHHHH
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG-KLDEARKLAAKLCSGKLSDSVQLWLLR 503 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~-~~~~A~~l~~~al~~~~P~~~~lW~~~ 503 (676)
. ...++++.+.++++++.+|.+...|..-.-.+...| .++++++.+++++ +..|.+...|..+
T Consensus 121 ~---------------~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p~n~saW~~r 184 (567)
T 1dce_A 121 P---------------EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNFSNYSSWHYR 184 (567)
T ss_dssp S---------------SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTCCCHHHHHHH
T ss_pred c---------------cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCCCCccHHHHH
Confidence 0 014689999999999999999999999888888888 8999999999999 8999999999999
Q ss_pred HHHHHHhccccCCC---C-ChhchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005817 504 ISVEIRCVTRNSFS---P-SKADILSIFELLKCILTKVSALESESLWLMA 549 (676)
Q Consensus 504 i~l~~~~~~~~~~~---p-~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~ 549 (676)
..+........... + ..+.++++.+.+.+|+...|... ..|...
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~ 232 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYH 232 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHH
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHH
Confidence 88776642110000 0 11346888899999998887654 468743
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00021 Score=77.06 Aligned_cols=103 Identities=6% Similarity=0.007 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGD---------------IELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFD 203 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~---------------~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~ 203 (676)
...|...|++|+...|.+ ..+|..++..+.+.+ +..|...|++++.++|+++..|...+....
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~- 362 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL- 362 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-
Confidence 678999999999999998 689999998888877 589999999999999999999999999886
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 005817 204 HNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYLNKL 243 (676)
Q Consensus 204 ~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~~~~ 243 (676)
..|+++.|+..|+++++..|++..+|..+..+.....+..
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999988888766554433
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=5.9e-05 Score=77.94 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDI-----------------ELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWE 201 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~-----------------~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e 201 (676)
...|...|++|+...|.+. .+|..++..+.+.+ +..+...|++++..+|+++.+|...+...
T Consensus 195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~ 274 (338)
T 2if4_A 195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK 274 (338)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5778999999999999876 48888888887777 68899999999999999999999999988
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005817 202 FDHNLNVTAARALMQNGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 202 ~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~ 235 (676)
. ..|+++.|+..|+++++..|++..+|..+..+
T Consensus 275 ~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 275 A-ELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp H-TTTCHHHHHHHHHHTTC---------------
T ss_pred H-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 6 78899999999999999999988877766554
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00028 Score=63.82 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHhhcc--------Cchh--------HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNV--------PSSM--------IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEK 453 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~--------~~~~--------lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~ 453 (676)
.++++.|+..|++++... |+.. ....|...-.-.. ..|.++.|...+++
T Consensus 24 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~---------------~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL---------------NIGDLHEAEETSSE 88 (162)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH---------------HHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH---------------hcCcHHHHHHHHHH
Confidence 478999999999999872 2111 1112222211111 24779999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-HHHHHHHHH
Q 005817 454 AEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-QLWLLRISV 506 (676)
Q Consensus 454 al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-~lW~~~i~l 506 (676)
++..+|.++..|...+..+...|++++|...+++++ ...|++. .++.....+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL-RNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH-hcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 8899987 555544433
No 172
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.76 E-value=0.00082 Score=63.18 Aligned_cols=135 Identities=12% Similarity=0.227 Sum_probs=97.7
Q ss_pred HHHHHHhhHHhHHHhhC---CCCChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHH
Q 005817 71 ISEIVKQRRKFEYRLKR---PSPLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIY 147 (676)
Q Consensus 71 i~~i~~~R~~fE~~l~~---~~~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 147 (676)
-..+...|..||..|.. ...-+..|++||+|=... .|- + . ........++
T Consensus 48 ~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~--------------yP~---g--------~--~~~s~L~~lL 100 (223)
T 4aez_C 48 VAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDN--------------FPQ---G--------E--TKTSGLVTLL 100 (223)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHH--------------CTT---C--------C--CTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHh--------------CcC---C--------C--cchhhHHHHH
Confidence 34567899999999986 234468899999985432 000 0 0 0112345799
Q ss_pred HHHHHhCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 148 RLAVMRFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRFH--PKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 148 eral~~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~~--P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
+||++.|.++ +++|+.|++++ .....+|.-+.... -....+|+.+|.+. +..|++..|..+|+
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~Ya~~~-----~~p~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQYVNYI-----DEPVELFSFLAHHHIGQESSIFYEEYANYF-ESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-----SCHHHHHHHHHHTTCSTTBHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHCCcchhHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 9999998777 47999999974 35667888777643 34689999999997 68899999999999
Q ss_pred HHHHhCCCC-HHHHHHHHHHHHH
Q 005817 217 NGLRVCPTS-EELWVEYLRMELT 238 (676)
Q Consensus 217 ral~~~p~~-~~lW~~y~~~e~~ 238 (676)
+|++.+..- ..|-..|-.|+.+
T Consensus 175 ~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 175 KGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHHTCBSHHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHHHH
Confidence 999988542 3566666666654
No 173
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.75 E-value=0.00041 Score=65.62 Aligned_cols=116 Identities=8% Similarity=-0.033 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHh
Q 005817 346 DDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMI 424 (676)
Q Consensus 346 ~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~ 424 (676)
.+.+...+++++ +.++.+|..+|..+.. .+++++|...|+++++..|... .|.........
T Consensus 22 ~~~A~~~~~~a~---~~~~~~~~~lg~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-- 83 (213)
T 1hh8_A 22 WKGALDAFSAVQ---DPHSRICFNIGCMYTI-------------LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-- 83 (213)
T ss_dssp HHHHHHHHHTSS---SCCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHc---CCChHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH--
Confidence 344444554443 2245566666666654 3567777777777776655432 33222222221
Q ss_pred cCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcH----------------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005817 425 APKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTE----------------DIAHRYVTLYLQLGKLDEARKLAAKL 488 (676)
Q Consensus 425 ~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~----------------~lw~~~~~l~~~~~~~~~A~~l~~~a 488 (676)
.|+++.|...|++++...|.+. ..|...+..+...|++++|...++++
T Consensus 84 ----------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 84 ----------------TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp ----------------TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3556777777777777655544 89999999999999999999999999
Q ss_pred hhccCCCh
Q 005817 489 CSGKLSDS 496 (676)
Q Consensus 489 l~~~~P~~ 496 (676)
+ ...|.+
T Consensus 148 l-~~~p~~ 154 (213)
T 1hh8_A 148 T-SMKSEP 154 (213)
T ss_dssp H-TTCCSG
T ss_pred H-HcCccc
Confidence 9 888875
No 174
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00024 Score=61.67 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhCCCHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVP-------GVWIYAAAWEFDHNLNVTA 210 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~-------~lW~~~a~~e~~~~~~~~~ 210 (676)
....|...|++|+...|.+...|...+..+...| +..+...|++++.+.|.++ .++...+.... ..|+++.
T Consensus 23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~ 101 (127)
T 4gcn_A 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ-KQNDLSL 101 (127)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH-HcCCHHH
Confidence 3678999999999999999999999999888887 5899999999999988764 35555555553 6789999
Q ss_pred HHHHHHHHHHhCCCCHHHHH
Q 005817 211 ARALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 211 Ar~~~~ral~~~p~~~~lW~ 230 (676)
|...|+++|..+|+ +++..
T Consensus 102 A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 102 AVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHhhCcC-HHHHH
Confidence 99999999999996 55443
No 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.73 E-value=0.0021 Score=64.66 Aligned_cols=190 Identities=14% Similarity=0.034 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC--ChHHHHHHHHHHHHHhccccCCCCChhchH
Q 005817 447 LLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS--DSVQLWLLRISVEIRCVTRNSFSPSKADIL 524 (676)
Q Consensus 447 a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P--~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~ 524 (676)
+...+++.+..++.++......+..+...|++++|+.++.+++ ...| ++.++....+++..+.+. .+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r----------~d 153 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNN----------VS 153 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTC----------HH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCC----------HH
Confidence 3455666665555556666788888899999999999999998 7776 889999999999988764 78
Q ss_pred HHHHHHHHHHhhcCh----hhhHHHH--HHHHHHHHh--hhHHHHHHHHHHHHhhhhCCCCCCCcchHH--HHHHHHHHh
Q 005817 525 SIFELLKCILTKVSA----LESESLW--LMALKFFMN--QKHYFDKLVEIALISVAKDGGGESGFSLPS--AIINLVIQK 594 (676)
Q Consensus 525 ~~~~~f~~Al~~~~~----~~~~~lW--~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~y~~~~~~~ 594 (676)
.+++++++..+.-|. .++..+. ..++..... .....-.+|+.+.. .. +.|.. ..+....+.
T Consensus 154 ~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~----~~-----p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 154 TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ----TF-----PTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT----TS-----CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hC-----CCcccHHHHHHHHHHc
Confidence 899999887655441 2222221 223333322 12334445555432 11 22211 223356688
Q ss_pred cCHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 005817 595 DGIQQAREMYKRFLAL----------PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQNTSLWRDYYST 664 (676)
Q Consensus 595 g~~~~Ar~iy~~al~~----------~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~~~~lW~~y~~f 664 (676)
|++++|..+++++++. .|.+.......|-+-..+| + .+..+++++.+..|+++ +-.+|..-
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg------k--~a~~l~~qL~~~~P~hp-~i~d~~~k 295 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG------L--DTEDLTNQLVKLDHEHA-FIKHHQEI 295 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT------C--TTHHHHHHHHHTTCCCH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC------h--HHHHHHHHHHHhCCCCh-HHHHHHHH
Confidence 9999999999987765 2667778888888877777 3 78899999999988764 33444444
Q ss_pred H
Q 005817 665 E 665 (676)
Q Consensus 665 E 665 (676)
+
T Consensus 296 ~ 296 (310)
T 3mv2_B 296 D 296 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00015 Score=62.93 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-------HHHHHHHHHHHHhccc
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-------QLWLLRISVEIRCVTR 513 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-------~lW~~~i~l~~~~~~~ 513 (676)
+|++++|+..|++|+..+|.++..|...+..+...|++++|+..+++++ ...|.+. .+|..........+
T Consensus 21 ~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~~-- 97 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN-- 97 (127)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHHcC--
Confidence 4779999999999999999999999999999999999999999999999 7666542 34555555555544
Q ss_pred cCCCCChhchHHHHHHHHHHHhhcCh
Q 005817 514 NSFSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 514 ~~~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
+.+++.+.|++|+...|.
T Consensus 98 --------~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 98 --------DLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp --------CHHHHHHHHHHHHHHSCC
T ss_pred --------CHHHHHHHHHHHHhhCcC
Confidence 588999999999986554
No 177
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.00036 Score=55.73 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005817 156 GDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLR 234 (676)
Q Consensus 156 ~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~ 234 (676)
.+...|...+..+...+ +..+...|++++...|.++..|...+.... ..|+++.|...|++++...|.+..+|..+..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35677877777777766 578999999999999999999999999886 6889999999999999999999888887766
Q ss_pred HH
Q 005817 235 ME 236 (676)
Q Consensus 235 ~e 236 (676)
..
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 178
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.66 E-value=0.002 Score=57.70 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=92.7
Q ss_pred hhHHhHHHhhCCC--CChHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHHhC
Q 005817 77 QRRKFEYRLKRPS--PLKQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVMRF 154 (676)
Q Consensus 77 ~R~~fE~~l~~~~--~~~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~~~ 154 (676)
.|..||..|.... .-+..|++||.|=... .| .. ........+++||++.|
T Consensus 2 ~r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~--------------~p----------~~----~~~s~L~~lLErc~~~f 53 (164)
T 2wvi_A 2 QKRAFEYEIRFYTGNDPLDVWDRYISWTEQN--------------YP----------QG----GKESNMSTLLERAVEAL 53 (164)
T ss_dssp CTHHHHHHCCCCCSSCTHHHHHHHHHHHHHH--------------CC----------C--------CCHHHHHHHHHHHT
T ss_pred hHHHHHHHHhhcCCCCChHHHHHHHHHHHHH--------------Cc----------CC----CccchHHHHHHHHHHHh
Confidence 4788999997432 2367799999985431 00 00 00112356999999998
Q ss_pred CCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Q 005817 155 KGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCP 223 (676)
Q Consensus 155 p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p 223 (676)
.++ +++|+.|++++ .....+|.-+... --....+|+.+|.+. +..|++..|..+|++|++.+.
T Consensus 54 ~~~~~YknD~RyLklWl~ya~~~-----~~p~~if~~L~~~~IG~~~AlfY~~wA~~l-E~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 54 QGEKRYYSDPRFLNLWLKLGRLC-----NEPLDMYSYLHNQGIGVSLAQFYISWAEEY-EARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp TTCGGGTTCHHHHHHHHHHHHHC-----SCHHHHHHHHHHTTSSTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCC
Confidence 665 47999999986 3456778777664 334789999999997 689999999999999999885
Q ss_pred CC-HHHHHHHHHHHHHH
Q 005817 224 TS-EELWVEYLRMELTY 239 (676)
Q Consensus 224 ~~-~~lW~~y~~~e~~~ 239 (676)
.- ..|-..+-.|....
T Consensus 128 ~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 128 EPLERLQSQHRQFQARV 144 (164)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 32 46777777777664
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.62 E-value=0.00035 Score=73.08 Aligned_cols=100 Identities=8% Similarity=-0.030 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005817 140 VARILEIYRLAVM----------------RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEF 202 (676)
Q Consensus 140 ~~~~~~iyeral~----------------~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~ 202 (676)
...|...|++|+. ..|.+..+|..++..+.+.+ +..+...|++++...|.++.+|...+....
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 318 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ 318 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 5778899999998 77778899999999888877 588999999999999999999999999886
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 005817 203 DHNLNVTAARALMQNGLRVCPTSEELWVEYLRMELTYL 240 (676)
Q Consensus 203 ~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e~~~~ 240 (676)
..|+++.|...|+++++..|++..+|..+..+.....
T Consensus 319 -~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 319 -GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp -HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred -HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999988887765543
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.62 E-value=0.00076 Score=68.36 Aligned_cols=193 Identities=9% Similarity=-0.026 Sum_probs=118.7
Q ss_pred hhhHHHHHHHHHHHHHcCCC-------c----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCC------hHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCL-------T----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSD------SVQLWLLR 503 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~-------~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~------~~~lW~~~ 503 (676)
.++++.|..++++|....+. + .+.+..-+..+...|++++|...+.+++ ...+. ....+...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEA-EAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 35666777777766653221 1 1345555677888999999999999998 65442 23455555
Q ss_pred HHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh----hhhHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhCCCC
Q 005817 504 ISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA----LESESLWLMALKFFMNQK--HYFDKLVEIALISVAKDGGG 577 (676)
Q Consensus 504 i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~----~~~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~ 577 (676)
+.+....+ +.+++.+.|++|+...+. ......+......+.. + +.+...|++|+.... ..+.
T Consensus 83 g~~~~~~g----------~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~-~~~~ 150 (307)
T 2ifu_A 83 GMMLKDLQ----------RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE-NEER 150 (307)
T ss_dssp HHHHHHTT----------CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHhCC----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-hCCC
Confidence 56665555 478888999999875321 1122334333333433 3 344556666665432 2221
Q ss_pred CC-CcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817 578 ES-GFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPG------LVLYQNCIELENNLASVGDKDSLVNARKLFESALAT 650 (676)
Q Consensus 578 ~~-~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~------~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~ 650 (676)
.. ........+......|++++|...|++++...|.. ...+...+.....++ +.+.|...|++++ .
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA------DYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHT-T
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHh-C
Confidence 00 01112234566778999999999999998754322 124445555555556 8999999999999 8
Q ss_pred CCC
Q 005817 651 YDQ 653 (676)
Q Consensus 651 ~~~ 653 (676)
.|.
T Consensus 224 ~p~ 226 (307)
T 2ifu_A 224 IPG 226 (307)
T ss_dssp STT
T ss_pred CCC
Confidence 884
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.62 E-value=0.00025 Score=74.15 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=88.2
Q ss_pred hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc----------------hh-HHHHHHHHHHHHhcCcc
Q 005817 366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS----------------SM-IFDLYTKFLMDMIAPKK 428 (676)
Q Consensus 366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~----------------~~-lw~~y~~~~~~~~~~~~ 428 (676)
.|..+|..++. .++++.|...|++|++..+. .. .|.........
T Consensus 225 ~~~~~g~~~~~-------------~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~------ 285 (370)
T 1ihg_A 225 DLKNIGNTFFK-------------SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK------ 285 (370)
T ss_dssp HHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHH-------------hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 35566666655 47899999999999983322 11 22222222221
Q ss_pred ccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHH
Q 005817 429 EETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEI 508 (676)
Q Consensus 429 ~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~ 508 (676)
.+++++|+..|++|+..+|.++..|...+..+...|++++|+..+++|+ +..|++..+|..+..+..
T Consensus 286 ------------~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 286 ------------MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp ------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHH
T ss_pred ------------ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999 889999988888776665
Q ss_pred Hhc
Q 005817 509 RCV 511 (676)
Q Consensus 509 ~~~ 511 (676)
..+
T Consensus 353 ~~~ 355 (370)
T 1ihg_A 353 KIK 355 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=0.00018 Score=64.56 Aligned_cols=96 Identities=10% Similarity=-0.027 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKL----------DEARKLAAKLCSGKLSDSVQLWLLRISVEIRC 510 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~----------~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~ 510 (676)
.+.++.|+..|++++..+|.+++.|..|+..+...+++ ++|+..|++|+ +..|+..+.|......+...
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-HhCcCcHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999988764 59999999999 89999999999988877765
Q ss_pred ccccCCCCC----hhchHHHHHHHHHHHhhcChh
Q 005817 511 VTRNSFSPS----KADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 511 ~~~~~~~p~----~~~~~~~~~~f~~Al~~~~~~ 540 (676)
+.+ +|+ .++.+++.+.|++|+..-|..
T Consensus 94 g~l---~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFL---TPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHH---CCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccc---CcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 421 121 135788999999999876643
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.61 E-value=0.00027 Score=63.57 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHHHHcCCC-------cHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhcc-------CCChHHHH-
Q 005817 441 EHYISHLLTVYEKAEAMGCL-------TED-----IAHRYVTLYLQLGKLDEARKLAAKLCSGK-------LSDSVQLW- 500 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~-------~~~-----lw~~~~~l~~~~~~~~~A~~l~~~al~~~-------~P~~~~lW- 500 (676)
.|+++.|...|++|+..+|. +.. .|..-+..+...|++++|+..+++|+ .. .|++...|
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd~~~A~~ 102 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWI 102 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCchHHHHH
Confidence 47799999999999999888 433 89999999999999999999999999 88 99999999
Q ss_pred ---HHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChh
Q 005817 501 ---LLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 501 ---~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
..+...+...+ +.+++.+.|++|+...|..
T Consensus 103 ~~~~~rG~aL~~lg----------r~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 103 SAVYSRALALDGLG----------RGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHCC----------CHHHHHHHHHHHHhcCCCc
Confidence 88888888776 4899999999999876543
No 184
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.55 E-value=0.0029 Score=60.17 Aligned_cols=186 Identities=10% Similarity=-0.005 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----CHHHHHHHHHH
Q 005817 143 ILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNL----NVTAARALMQN 217 (676)
Q Consensus 143 ~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~----~~~~Ar~~~~r 217 (676)
+...|+++... ++...+..+..+....+ ..++...|++++.. .++..+..++.... . + +++.|...|++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHH
Confidence 45788888875 88999999998887766 57899999999875 57899999888875 3 5 89999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhh
Q 005817 218 GLRVCPTSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMES 297 (676)
Q Consensus 218 al~~~p~~~~lW~~y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (676)
++. +.++..+..+..+... +...
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~------------g~g~------------------------------------------- 101 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVN------------RQAG------------------------------------------- 101 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTC------------GGGS-------------------------------------------
T ss_pred HHH--CCCHHHHHHHHHHHHc------------CCCC-------------------------------------------
Confidence 976 4566666555544221 0000
Q ss_pred hhhhhhHHHhhhHHHHHHHHHHHhcCCC--chhHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHh
Q 005817 298 QKSVDLFREQGLRVLQTIYSGAVEALPS--SFNLRQRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPKYWDWLARLK 374 (676)
Q Consensus 298 ~~~~~~~~~~~~~~a~~iy~~Al~~~p~--~~~~~~~~~~~~~~fe-~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~ 374 (676)
.++++.|...|++|++..|. ....+..+-.++..-. ...+.+.+...++++... |.++..+..++..+
T Consensus 102 --------~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 102 --------ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp --------SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred --------ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 02668899999999998773 2444555544443311 123578899999999888 77788889999988
Q ss_pred ccccCCCCCCCcCcchhHHHHHHHHHHHHhhcc
Q 005817 375 MTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNV 407 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~ 407 (676)
..+..- .+..++++|...|++|++.-
T Consensus 173 ~~g~gg-------~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 173 QQGEKG-------FIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHCBTT-------TBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCC-------CCCCCHHHHHHHHHHHHHcC
Confidence 654110 01347899999999998753
No 185
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.54 E-value=0.0013 Score=58.13 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=90.4
Q ss_pred HHhhHHhHHHhhCC-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhccccccccchhHHHHHHHHHHHHH
Q 005817 75 VKQRRKFEYRLKRP-SPL-KQDYLAYIEYESQLDALRRLRKKSIGRDEGRERRVSKKMKKSVSDFSGVARILEIYRLAVM 152 (676)
Q Consensus 75 ~~~R~~fE~~l~~~-~~~-~~~~~~Yi~~E~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyeral~ 152 (676)
..-|..||..|..- +.. +..|++||+|=... . + . .......+++|+++
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~--------------~----------P---~---g~~~l~~lLErc~~ 56 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN--------------F----------P---E---NKEYLITLLEHLMK 56 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT--------------C----------S---S---CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH--------------c----------C---C---CchhHHHHHHHHHH
Confidence 34577899999973 222 57799999985321 1 1 0 01236689999999
Q ss_pred hCCCC---------HHHHHHHHHHHHHccCchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 005817 153 RFKGD---------IELWFKYMEFCRQRKNGRMKKVLAQVIRF--HPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRV 221 (676)
Q Consensus 153 ~~p~~---------~~lW~~y~~~~~~~~~~~~~~~~~ral~~--~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~ 221 (676)
.|.++ +++|+.|++++ .....+|.-+... --....+|+.+|.+. +..|++..|..+|++|++.
T Consensus 57 ~f~~~~~YknD~RyLklWl~ya~~~-----~dp~~if~~L~~~~IG~~~AlfYe~wA~~l-E~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 57 EFLDKKKYHNDPRFISYCLKFAEYN-----SDLHQFFEFLYNHGIGTLSSPLYIAWAGHL-EAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHTTCGGGTTCHHHHHHHHHHHTTB-----SCHHHHHHHHHTTTTTTTBHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHT
T ss_pred HhcccccccCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHCCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Confidence 88654 47999999885 2367788877664 334689999999987 6899999999999999998
Q ss_pred CCCC-HHHHHHHHHHH
Q 005817 222 CPTS-EELWVEYLRME 236 (676)
Q Consensus 222 ~p~~-~~lW~~y~~~e 236 (676)
+..- ..|-..|-.|.
T Consensus 131 ~A~P~~rL~~~~~~F~ 146 (152)
T 4a1g_A 131 QAEPREFLQQQYRLFQ 146 (152)
T ss_dssp TCBSHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 7542 34555555554
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.51 E-value=0.00047 Score=74.80 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQ 216 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ 216 (676)
.....|...|++|+...|.+...|..++..+.+.+ ++.|...|++++..+|.++..|...+.... ..|+++.|...|+
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~ 98 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYE 98 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 34678999999999999999999999999988887 588999999999999999999999999886 6789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHH
Q 005817 217 NGLRVCPTSEELWVEYLRM 235 (676)
Q Consensus 217 ral~~~p~~~~lW~~y~~~ 235 (676)
++++..|++..+|..+...
T Consensus 99 ~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 99 TVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHSTTCTTHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHH
Confidence 9999999998888777665
No 187
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.51 E-value=0.0025 Score=63.82 Aligned_cols=155 Identities=9% Similarity=0.021 Sum_probs=105.8
Q ss_pred CcHHHHHHHHHHHHhcCCCChhh-----HHH-HHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-H---H
Q 005817 344 QSDDMHDKILSDMQRDFLVDPKY-----WDW-LARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-I---F 413 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~~p~~~~~-----w~~-la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-l---w 413 (676)
+..+.+...++++....|..+.. |.. ++..+.. .++++.|...|++++...+... . .
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK-------------KVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT-------------SSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc-------------ccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 35778888888888877776552 222 4555433 3578999999999998543221 1 1
Q ss_pred HHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc---C----CCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005817 414 DLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM---G----CLTEDIAHRYVTLYLQLGKLDEARKLAA 486 (676)
Q Consensus 414 ~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~---~----p~~~~lw~~~~~l~~~~~~~~~A~~l~~ 486 (676)
..|...-.-. ...|++++|...|++|+.. . +....++...+..+...|++++|...++
T Consensus 156 ~~~~~lg~~y---------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 156 YIENAIANIY---------------AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1122211111 1246789999999999952 1 2234578899999999999999999999
Q ss_pred HHhhccCC------ChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 487 KLCSGKLS------DSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 487 ~al~~~~P------~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+|+ ...+ ....+|...+......|. +.+++.+.|++|+..
T Consensus 221 ~al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 221 KAI-EISCRINSMALIGQLYYQRGECLRKLEY---------EEAEIEDAYKKASFF 266 (293)
T ss_dssp HHH-HHHHHTTBCTTHHHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHcCcHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHH
Confidence 999 5433 236788888887777663 357888888888763
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.00014 Score=60.05 Aligned_cols=72 Identities=10% Similarity=0.054 Sum_probs=63.5
Q ss_pred hCCCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817 153 RFKGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 153 ~~p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
..|++...|..++..+...| ++.+...|++++...|+++..|...+.... ..|+++.|...|+++++..|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYE-RLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhhhcC
Confidence 47999999999999998887 588999999999999999999999999886 7889999999999999987753
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.50 E-value=0.00019 Score=77.84 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHhhccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
.+++++|...|++|++..|... .|......... .+++++|...|++|+..+|.++..|...
T Consensus 19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~~l 80 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR------------------TECYGYALGDATRAIELDKKYIKGYYRR 80 (477)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH------------------hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 5789999999999999888643 45444333332 4779999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l 506 (676)
+..+...|++++|...+++++ +..|++...|..+...
T Consensus 81 g~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 81 AASNMALGKFRAALRDYETVV-KVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-HHSTTCTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Confidence 999999999999999999999 8899988888776655
No 190
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.49 E-value=0.0015 Score=66.23 Aligned_cols=192 Identities=12% Similarity=0.065 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHHHhcCCC-------chhHHHHHHH-HHHHhcccCcHHHHHHHHHHHHhcCCCC------hhhHHHHHH
Q 005817 307 QGLRVLQTIYSGAVEALPS-------SFNLRQRFFE-IVEATNLAQSDDMHDKILSDMQRDFLVD------PKYWDWLAR 372 (676)
Q Consensus 307 ~~~~~a~~iy~~Al~~~p~-------~~~~~~~~~~-~~~~fe~~~~~~~a~~il~~~~~~~p~~------~~~w~~la~ 372 (676)
++++.|..++++|.+..+. +.+-...++. ....|...+.++.+...+.+++..++.. ...+..++.
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777777777764432 1111111111 1111222235677777787777765432 234566666
Q ss_pred HhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHH
Q 005817 373 LKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLL 448 (676)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~ 448 (676)
.+.. .+++++|+..|++|++..+.. . .-..|...-.- + .. +++++|.
T Consensus 85 ~~~~-------------~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~-~--------------~~-g~~~~A~ 135 (307)
T 2ifu_A 85 MLKD-------------LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL-M--------------EP-LDLSKAV 135 (307)
T ss_dssp HHHH-------------TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-H--------------TT-TCHHHHH
T ss_pred HHHh-------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H--------------Hc-CCHHHHH
Confidence 6644 467888999999998753221 1 11222221111 1 12 6689999
Q ss_pred HHHHHHHHcCCCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHHhccccCC
Q 005817 449 TVYEKAEAMGCLT------EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCVTRNSF 516 (676)
Q Consensus 449 ~iye~al~~~p~~------~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~~~~~~ 516 (676)
..|++|+...+.. ...+...+.++...|++++|+..+++++ ...|.+ ...|...+......+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~g~~~~~~g----- 209 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK-SMYKEMENYPTCYKKCIAQVLVQLHRA----- 209 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHcC-----
Confidence 9999999874432 5678889999999999999999999999 655432 234555555554444
Q ss_pred CCChhchHHHHHHHHHHHhhcCh
Q 005817 517 SPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 517 ~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
+.+++...|++++ ..|.
T Consensus 210 -----~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 210 -----DYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp -----CHHHHHHHHHHHT-TSTT
T ss_pred -----CHHHHHHHHHHHh-CCCC
Confidence 4799999999999 6553
No 191
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.46 E-value=0.00067 Score=55.28 Aligned_cols=77 Identities=12% Similarity=-0.062 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHc-c---CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHH
Q 005817 154 FKGDIELWFKYMEFCRQR-K---NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELW 229 (676)
Q Consensus 154 ~p~~~~lW~~y~~~~~~~-~---~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW 229 (676)
.|.+.++|..|++...-. + ...+..+|+++|..+|+++..++..+...+ ..|++..|...+++.+...|. ..|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~--~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDP--NLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCT--TCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--Ccc
Confidence 689999999999998543 2 368999999999999999999999999997 688999999999999999998 445
Q ss_pred HHHH
Q 005817 230 VEYL 233 (676)
Q Consensus 230 ~~y~ 233 (676)
..-+
T Consensus 79 ~~~i 82 (93)
T 3bee_A 79 RVTI 82 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 192
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.43 E-value=0.0076 Score=57.16 Aligned_cols=188 Identities=12% Similarity=0.021 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchh
Q 005817 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPS 391 (676)
Q Consensus 312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~ 391 (676)
|...|+++.+. .+...+..+-.++.. ....+.+...++++... .++..+..++..+..++ +..
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g----------~~~ 67 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVS---SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNP----------QQA 67 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSST----------TSC
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCC----------CCC
Confidence 56777888775 344444444444433 24577888889888764 67889999999986521 124
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC--cHHHHHHHH
Q 005817 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TEDIAHRYV 469 (676)
Q Consensus 392 ~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~--~~~lw~~~~ 469 (676)
++++|...|+++++.-...... ........ ... ..+++++|...|++|...++. .+..+...+
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~-~Lg~~y~~----g~g----------~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg 132 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEI-VLARVLVN----RQA----------GATDVAHAITLLQDAARDSESDAAVDAQMLLG 132 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHH-HHHHHHTC----GGG----------SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHH-HHHHHHHc----CCC----------CccCHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 6899999999997642221111 11111111 000 135689999999999999874 488899999
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 470 TLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 470 ~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
.++.. .+++++|...+++++ .. |.++..+.....++..... ... + .+.+++.+.|++|+..-
T Consensus 133 ~~y~~g~g~~~d~~~A~~~~~~A~-~~-~~~~~a~~~Lg~~y~~g~g-g~~-~--~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 133 LIYASGVHGPEDDVKASEYFKGSS-SL-SRTGYAEYWAGMMFQQGEK-GFI-E--PNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHH-HT-SCTTHHHHHHHHHHHHCBT-TTB-C--CCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHcCCC-CCC-C--CCHHHHHHHHHHHHHcC
Confidence 99988 789999999999999 55 5555556665555544210 000 0 16789999999998753
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.34 E-value=0.00064 Score=61.07 Aligned_cols=96 Identities=9% Similarity=-0.090 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcc-CchHHHHHHHHHHh-------CCCCHHHH----H
Q 005817 140 VARILEIYRLAVMRFKG-------DIE-----LWFKYMEFCRQRK-NGRMKKVLAQVIRF-------HPKVPGVW----I 195 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~-------~~~-----lW~~y~~~~~~~~-~~~~~~~~~ral~~-------~P~~~~lW----~ 195 (676)
...|...|++|+...|. +.. +|......+.+.| ++.+...|++||.+ +|+++..| .
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~ 106 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY 106 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHH
Confidence 67789999999999999 555 9998888888877 68899999999999 99999999 7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005817 196 YAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYLRME 236 (676)
Q Consensus 196 ~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~~~e 236 (676)
..+.... ..|+++.|...|++++.+.|++..+..+..+..
T Consensus 107 ~rG~aL~-~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 107 SRALALD-GLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred hHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 7666664 788999999999999999998766666655543
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.0013 Score=54.01 Aligned_cols=71 Identities=10% Similarity=-0.129 Sum_probs=61.9
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 457 MGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 457 ~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
.+|.++..|...+..+...|++++|+..+++++ +..|++...|..++......| +.+++.+.|++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~g----------~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELV-ETDPDYVGTYYHLGKLYERLD----------RTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhh
Confidence 358899999999999999999999999999999 899999999999998888776 478999999999976
Q ss_pred cC
Q 005817 537 VS 538 (676)
Q Consensus 537 ~~ 538 (676)
.+
T Consensus 71 ~~ 72 (100)
T 3ma5_A 71 AR 72 (100)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 195
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.27 E-value=0.0058 Score=61.13 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=105.2
Q ss_pred HHhhhHHHHHHHHHHHhcCCCchhHH--HHHHHHHHHhc-ccCcHHHHHHHHHHHHhcCCCChh------hHHHHHHHhc
Q 005817 305 REQGLRVLQTIYSGAVEALPSSFNLR--QRFFEIVEATN-LAQSDDMHDKILSDMQRDFLVDPK------YWDWLARLKM 375 (676)
Q Consensus 305 ~~~~~~~a~~iy~~Al~~~p~~~~~~--~~~~~~~~~fe-~~~~~~~a~~il~~~~~~~p~~~~------~w~~la~~~~ 375 (676)
..++++.|..+|+++++..+...+.. ..++.....+. ..+..+.+...+++++...+.... ++..+|..+.
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 44688999999999998776654432 11222111221 223567889999999886554433 4677777775
Q ss_pred cccCCCCCCCcCcchhHHHHHHHHHHHHhhccC---chh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHH
Q 005817 376 TDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVP---SSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTV 450 (676)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~---~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~i 450 (676)
. .+++++|...|+++++... ... .-..|...-.-.. ..|++++|...
T Consensus 167 ~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~---------------~~~~y~~A~~~ 218 (293)
T 3u3w_A 167 E-------------NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---------------LDSRYEESLYQ 218 (293)
T ss_dssp H-------------TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH---------------HTTCHHHHHHH
T ss_pred H-------------cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH---------------HHhHHHHHHHH
Confidence 5 5789999999999996321 211 1112222211111 24779999999
Q ss_pred HHHHHHcCCC------cHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 005817 451 YEKAEAMGCL------TEDIAHRYVTLYLQLG-KLDEARKLAAKLC 489 (676)
Q Consensus 451 ye~al~~~p~------~~~lw~~~~~l~~~~~-~~~~A~~l~~~al 489 (676)
+++|+...+. -..++...+..+...| .+++|...+++|+
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999976322 2678999999999999 4799999999998
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.27 E-value=0.0012 Score=52.53 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=61.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIR 509 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~ 509 (676)
.+++++|...|++++..+|.++..|...+..+...|++++|...+++++ ...|.+...|..+..+...
T Consensus 22 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999 8899999888887765543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0021 Score=53.15 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Q 005817 157 DIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTS 225 (676)
Q Consensus 157 ~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~ 225 (676)
+...|...+..+...| +..+...|++++...|.++.+|...+.... ..|+++.|...|++++...|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCc
Confidence 3567777777777766 578999999999999999999999999886 6889999999999999999987
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.15 E-value=0.026 Score=56.63 Aligned_cols=182 Identities=8% Similarity=-0.042 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHhcccCcHHHHHHHHHHHHhcCC--CChhhHHHHHHHhccccCCCCCCCcCcc
Q 005817 312 LQTIYSGAVEALPSSFNLRQRFFEIVEATNLAQSDDMHDKILSDMQRDFL--VDPKYWDWLARLKMTDSVSKDGTSEDIV 389 (676)
Q Consensus 312 a~~iy~~Al~~~p~~~~~~~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p--~~~~~w~~la~~~~~~~~~~~~~~~~~~ 389 (676)
|...+++.++..+.+......+..++ ...+..+.|..++.+++...| ++.++....++.++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~---~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~------------- 148 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQ---AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL------------- 148 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHH---HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHH---HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-------------
Confidence 56677776665433322222222222 223467899999999988887 678888899999887
Q ss_pred hhHHHHHHHHHHHHhhccCc-----hhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCC--cH
Q 005817 390 PSQMQKAIQVYEEALKNVPS-----SMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCL--TE 462 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~-----~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~--~~ 462 (676)
.++.+.|+..+++..+..|. ..+....+..+..... + .+.+..|..+|+++....|. ++
T Consensus 149 ~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~--g------------~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT--N------------KETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH--T------------CSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh--C------------CccHHHHHHHHHHHHHhCCCcccH
Confidence 57899999999998776662 3333333333222211 0 12478899999999888776 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccC----------CChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHH
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKL----------SDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKC 532 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~----------P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~ 532 (676)
.+.+. .++..|++++|..+++.++ +.+ |++++.....|.+....|. .+.+++.+
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~-~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk------------~a~~l~~q 278 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLL-SDYYSVEQKENAVLYKPTFLANQITLALMQGL------------DTEDLTNQ 278 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHH-SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC------------TTHHHHHH
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHH-HhcccccccccCCCCCHHHHHHHHHHHHHhCh------------HHHHHHHH
Confidence 33333 6788999999999999877 653 8899988887777766552 34456677
Q ss_pred HHhhcCh
Q 005817 533 ILTKVSA 539 (676)
Q Consensus 533 Al~~~~~ 539 (676)
+.+.-|.
T Consensus 279 L~~~~P~ 285 (310)
T 3mv2_B 279 LVKLDHE 285 (310)
T ss_dssp HHHTTCC
T ss_pred HHHhCCC
Confidence 7665554
No 199
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.15 E-value=0.015 Score=58.07 Aligned_cols=174 Identities=10% Similarity=0.007 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHcc-CchHHHHHHHHHHhCCCCHH-----HHH-HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH
Q 005817 155 KGDIELWFKYMEFCRQRK-NGRMKKVLAQVIRFHPKVPG-----VWI-YAAAWEFDHNLNVTAARALMQNGLRVCPTSEE 227 (676)
Q Consensus 155 p~~~~lW~~y~~~~~~~~-~~~~~~~~~ral~~~P~~~~-----lW~-~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~ 227 (676)
|.....+..-+..+...| +..+...+.+++...|..+. .|. ..+... ...|+++.|...|++++...+....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 334444444555544444 46778888888888776542 222 222333 3567888888888888877665432
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHhccccccccccccchhHHhhhhhccccccCCCCCCCCCCCCCCcchhhhhhhhhH
Q 005817 228 LWVE---YLRMELTYLNKLKARKVALGEDKGTLVRDHRDADEKRWINENKGLFMPLDGEVENTDGSQPENMESQKSVDLF 304 (676)
Q Consensus 228 lW~~---y~~~e~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (676)
.|.. |..+-..+ .
T Consensus 151 ~~~~~~~~~~lg~~y----------------------------------------------------------------~ 166 (293)
T 2qfc_A 151 VYQNLYIENAIANIY----------------------------------------------------------------A 166 (293)
T ss_dssp TTHHHHHHHHHHHHH----------------------------------------------------------------H
T ss_pred hHHHHHHHHHHHHHH----------------------------------------------------------------H
Confidence 2221 11110000 0
Q ss_pred HHhhhHHHHHHHHHHH---hcCCCchhHH-HHHHHHHHHhcccCcHHHHHHHHHHHHhcCCCC------hhhHHHHHHHh
Q 005817 305 REQGLRVLQTIYSGAV---EALPSSFNLR-QRFFEIVEATNLAQSDDMHDKILSDMQRDFLVD------PKYWDWLARLK 374 (676)
Q Consensus 305 ~~~~~~~a~~iy~~Al---~~~p~~~~~~-~~~~~~~~~fe~~~~~~~a~~il~~~~~~~p~~------~~~w~~la~~~ 374 (676)
..++++.|...|++|+ +..|++.... ..+..+...+...+.++.|...+++++...++. ..++..+|..+
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 1246788999999999 4556543222 222232222322346788888888887654321 55677888877
Q ss_pred ccccCCCCCCCcCcchhHHHHH-HHHHHHHhhc
Q 005817 375 MTDSVSKDGTSEDIVPSQMQKA-IQVYEEALKN 406 (676)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~A-~~~ye~al~~ 406 (676)
.. .+++++| ...|++|+..
T Consensus 247 ~~-------------~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 247 RK-------------LEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HH-------------TTCCHHHHHHHHHHHHHH
T ss_pred HH-------------cCCcHHHHHHHHHHHHHH
Confidence 65 4667888 7778988853
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0025 Score=52.78 Aligned_cols=70 Identities=9% Similarity=-0.036 Sum_probs=61.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHHhc
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCV 511 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~ 511 (676)
.|++++|...|++++..+|.++..|...+..+...|++++|+..+++++ ...|++ ...+..........+
T Consensus 17 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 17 QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999999999999999999 889987 666766666555544
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.07 E-value=0.0031 Score=62.07 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=83.2
Q ss_pred cchhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----c-CchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCC
Q 005817 136 DFSGVARILEIYRLAVMRFKG--DIELWFKYMEFCRQR-----K-NGRMKKVLAQVIRFHPKV-PGVWIYAAAWEFDHNL 206 (676)
Q Consensus 136 ~~~~~~~~~~iyeral~~~p~--~~~lW~~y~~~~~~~-----~-~~~~~~~~~ral~~~P~~-~~lW~~~a~~e~~~~~ 206 (676)
-.+....+..+++||+...|+ +...|..+..++... | .++++..|+|||.++|+. ...++.|+.+.....|
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345678899999999999999 677999999998874 4 478999999999999975 9999999999865568
Q ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 005817 207 NVTAARALMQNGLRVCPTS---EELWVEYLRM 235 (676)
Q Consensus 207 ~~~~Ar~~~~ral~~~p~~---~~lW~~y~~~ 235 (676)
+.+.|+..++++++..|.. ..++....+=
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~ 286 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVILSQK 286 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHHHHH
Confidence 9999999999999988863 3455444443
No 202
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.05 E-value=0.038 Score=55.06 Aligned_cols=84 Identities=7% Similarity=-0.089 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTED------IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEI 508 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~------lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~ 508 (676)
.++++.|...|++++...+..+. .+...+.++...|++++|...+++++ ...+.. ..+|...+.+..
T Consensus 88 ~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 88 QKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHH
Confidence 36789999999999988665432 23345666778899999999999999 644432 456666666666
Q ss_pred HhccccCCCCChhchHHHHHHHHHHHh
Q 005817 509 RCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
..+ +.+++.+.|++|+.
T Consensus 167 ~~~----------~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 167 ENG----------YLKKGIDLFEQILK 183 (293)
T ss_dssp HTT----------CHHHHHHHHHHHHH
T ss_pred HcC----------CHHHHHHHHHHHHH
Confidence 655 47888899999984
No 203
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.02 E-value=0.017 Score=53.45 Aligned_cols=85 Identities=12% Similarity=-0.096 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------cCCChHHHHHHHHHHHHHhcccc
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSG------KLSDSVQLWLLRISVEIRCVTRN 514 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~------~~P~~~~lW~~~i~l~~~~~~~~ 514 (676)
.|.++.|..+++......+.....+...+..+...|++++|...+++++ . ..|.....+.....+....|
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 80 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ-QQAQKSGDHTAEHRALHQVGMVERMAG--- 80 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHcC---
Confidence 4678888885554444333567889999999999999999999999999 5 23334566666666666655
Q ss_pred CCCCChhchHHHHHHHHHHHhh
Q 005817 515 SFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 515 ~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+.+++.+.|++++..
T Consensus 81 -------~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 81 -------NWDAARRCFLEEREL 95 (203)
T ss_dssp -------CHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHH
Confidence 478888888988875
No 204
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.00 E-value=0.0055 Score=56.90 Aligned_cols=137 Identities=9% Similarity=-0.063 Sum_probs=89.4
Q ss_pred CChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCc---hh-HHHHHHHHHHHHhcCccccccCCCCC
Q 005817 362 VDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPS---SM-IFDLYTKFLMDMIAPKKEETRDSELP 437 (676)
Q Consensus 362 ~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~---~~-lw~~y~~~~~~~~~~~~~d~~~~~~~ 437 (676)
....++..++..+.. .++++.|...|++++..... .. ....+...-.-..
T Consensus 24 ~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~------------- 77 (203)
T 3gw4_A 24 TASGARFMLGYVYAF-------------MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER------------- 77 (203)
T ss_dssp THHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHH-------------hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------------
Confidence 345667777777765 57899999999999984321 11 1111111111111
Q ss_pred hhhhhhHHHHHHHHHHHHHc---CCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---Ch---HHHHHHHH
Q 005817 438 SHVEHYISHLLTVYEKAEAM---GCLT----EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS---DS---VQLWLLRI 504 (676)
Q Consensus 438 ~~~~~~~~~a~~iye~al~~---~p~~----~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P---~~---~~lW~~~i 504 (676)
..|+++.|...|++++.. .+.+ ...+...+..+...|++++|...+++++ ...+ +. ...+...+
T Consensus 78 --~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 78 --MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL-VYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred --HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHH
Confidence 246789999999999886 3422 4567788999999999999999999998 4322 21 22334445
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHhhc
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKV 537 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~ 537 (676)
.+....| +.+++.+.|++|+...
T Consensus 155 ~~~~~~g----------~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 155 DLAQQEK----------NLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHTT----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHCc----------CHHHHHHHHHHHHHHH
Confidence 5555555 4788888888888643
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.049 Score=53.53 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=84.2
Q ss_pred HHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCch---hHHHHHHHHHHHHhcCcccc
Q 005817 354 SDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSS---MIFDLYTKFLMDMIAPKKEE 430 (676)
Q Consensus 354 ~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~---~lw~~y~~~~~~~~~~~~~d 430 (676)
.-+.+..|++.+.+++.|-....-... ..+..........|+..++++++.-|+- ..|.....+....- .
T Consensus 142 ~~l~~~~~~dve~L~W~ai~~ss~a~~--~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vP-p---- 214 (301)
T 3u64_A 142 KVLSRCTRVDVGTLYWVGTGYVAAFAL--TPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAP-E---- 214 (301)
T ss_dssp HHHTTCCGGGHHHHHHHHHHHHHHHTT--SCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSC-T----
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHhc--CCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCC-C----
Confidence 334455677766544444332110000 0011223567889999999999998872 24444433333211 0
Q ss_pred ccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhccCCC
Q 005817 431 TRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRYVTLYLQL-GKLDEARKLAAKLCSGKLSD 495 (676)
Q Consensus 431 ~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~~~l~~~~-~~~~~A~~l~~~al~~~~P~ 495 (676)
..-|+.++|+..|++|+..+|.. .+.+..|++++... |+.+.|...+++++ ...|+
T Consensus 215 --------~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL-~a~p~ 272 (301)
T 3u64_A 215 --------SFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL-AIDPE 272 (301)
T ss_dssp --------TTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HCCGG
T ss_pred --------ccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCCC
Confidence 01267899999999999999975 99999999999885 99999999999999 65554
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.85 E-value=0.007 Score=49.05 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=50.8
Q ss_pred CchHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKVPG-VWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~-lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~ 230 (676)
+..+...|++++...|.++. +|...+.... ..|+++.|...|++++...|++..+|.
T Consensus 16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 57889999999999999999 9999998876 678999999999999999999888773
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.85 E-value=0.0042 Score=50.44 Aligned_cols=60 Identities=18% Similarity=0.048 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTED-IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~-lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
.++++.|...|++++..+|.++. .|...+..+...|++++|...+++++ ...|++...|.
T Consensus 13 ~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~ 73 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI-ELNPDSPALQA 73 (99)
T ss_dssp HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCcHHHHH
Confidence 47789999999999999999999 99999999999999999999999999 88999888773
No 208
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.79 E-value=0.0085 Score=52.73 Aligned_cols=134 Identities=9% Similarity=-0.083 Sum_probs=86.5
Q ss_pred hHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh--HHHHHHHHHHHHhcCccccccCCCCChhhhhh
Q 005817 366 YWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHY 443 (676)
Q Consensus 366 ~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~ 443 (676)
++..+|..+.. .+++++|...|+++++..+... .....+........ ...|+
T Consensus 11 ~~~~l~~~~~~-------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~-------------~~~g~ 64 (164)
T 3ro3_A 11 AFGNLGNTHYL-------------LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAY-------------IFLGE 64 (164)
T ss_dssp HHHHHHHHHHH-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------HHTTC
T ss_pred HHHHHHHHHHH-------------hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-------------HHcCC
Confidence 45566666654 4779999999999998654321 11111111111110 12467
Q ss_pred HHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCC---C---hHHHHHHHHHHHHHhc
Q 005817 444 ISHLLTVYEKAEAMGCL------TEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLS---D---SVQLWLLRISVEIRCV 511 (676)
Q Consensus 444 ~~~a~~iye~al~~~p~------~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P---~---~~~lW~~~i~l~~~~~ 511 (676)
+++|...|++++...+. ....+...+..+...|++++|...+++++ ...+ + ....+...+.+....+
T Consensus 65 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 89999999999876322 14578888999999999999999999998 5322 1 2344455555555554
Q ss_pred cccCCCCChhchHHHHHHHHHHHhh
Q 005817 512 TRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 512 ~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+.+++.+.|++++..
T Consensus 144 ----------~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 144 ----------NHDQAMHFAEKHLEI 158 (164)
T ss_dssp ----------CHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHH
Confidence 467888888888764
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.026 Score=59.47 Aligned_cols=195 Identities=11% Similarity=-0.006 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHH-H
Q 005817 441 EHYISHLLTVYEKAEAMGCLTE-----------------DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWL-L 502 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~-----------------~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~-~ 502 (676)
.|++++|...|.+++...|... ......+.++...|++++|...+.+++ ...+....--. .
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-EYMMQFAKSKTVK 95 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH-HHHHTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccchHHHH
Confidence 4668888899998888765532 246778899999999999999999998 54443211111 1
Q ss_pred HHH--HHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhC
Q 005817 503 RIS--VEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE----SESLWLMALKFFMNQK--HYFDKLVEIALISVAKD 574 (676)
Q Consensus 503 ~i~--l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~----~~~lW~~~l~~~~~~~--~~~~~~~~~a~~~~~~~ 574 (676)
.+. +..-... .++.+.+.+++++++...+... ...++...+..+...+ ..+...++.+...+...
T Consensus 96 ~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 96 VLKTLIEKFEQV-------PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp HHHHHHHHHCSC-------CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 111 1111111 1257888888998886432111 1233433333333333 33445555555443322
Q ss_pred CCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHHcC----C-CCC--HHHHHHHHHHHhhccCCCCccchHHHHHHH
Q 005817 575 GGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFLAL----P-RPG--LVLYQNCIELENNLASVGDKDSLVNARKLF 644 (676)
Q Consensus 575 ~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al~~----~-p~~--~~l~~~~i~lE~~~~~~~~~~~~~~aR~ly 644 (676)
.. .+.....| +......|++++|+.+|++++.. + |+. ..++.....+....+ +.+.|...|
T Consensus 169 ~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~y~~A~~~~ 239 (434)
T 4b4t_Q 169 DD---KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK------DYKTAFSYF 239 (434)
T ss_dssp SC---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS------CHHHHHHHH
T ss_pred cc---chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH------hHHHHHHHH
Confidence 21 22333233 44566789999999999999753 1 211 234555555555555 899999999
Q ss_pred HHHHhhCC
Q 005817 645 ESALATYD 652 (676)
Q Consensus 645 e~al~~~~ 652 (676)
..++..++
T Consensus 240 ~~a~~~~~ 247 (434)
T 4b4t_Q 240 FESFESYH 247 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998765
No 210
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.60 E-value=0.052 Score=47.83 Aligned_cols=137 Identities=9% Similarity=0.121 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhhh----HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHH
Q 005817 523 ILSIFELLKCILTKVSALESESLWLMALKFFMNQK----HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQ 598 (676)
Q Consensus 523 ~~~~~~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~ 598 (676)
...+++.|+..|.....++.+.+|..|+.+.+.+- ..+..++++++..+.....-.+-+-....++.+. ...+
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya---~~~~ 82 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFA---EYNS 82 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH---TTBS
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH---HhcC
Confidence 45677789999998877788999999998886542 3466788888776532211001111122223332 2234
Q ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHHhhc
Q 005817 599 QAREMYKRFLAL--PRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETKV 668 (676)
Q Consensus 599 ~Ar~iy~~al~~--~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE~~~ 668 (676)
.++.+|.-+... ......+|..++.+-...+ +.+.|.++|+.+++.... -..+--.|.+|+...
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQG------ELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL 149 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence 488999987643 3445669999998776777 899999999999997552 238888899998764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.58 E-value=0.22 Score=50.97 Aligned_cols=152 Identities=10% Similarity=-0.092 Sum_probs=100.0
Q ss_pred HHHHhcCCCChhhHHHHH--HHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhccCchh-----HHHHHHHHHHHHhcC
Q 005817 354 SDMQRDFLVDPKYWDWLA--RLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKNVPSSM-----IFDLYTKFLMDMIAP 426 (676)
Q Consensus 354 ~~~~~~~p~~~~~w~~la--~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~~~~~~-----lw~~y~~~~~~~~~~ 426 (676)
+++.+.-|.++.+|..+- ..++...+ ...+.+|+..|++|++.-|+.. +...|+ ......
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~----------~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~--~~~~~~- 250 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGD----------DKSLNRASELLGEIVQSSPEFTYARAEKALVDI--VRHSQH- 250 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HHHHHS-
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhccC-
Confidence 345566788888876553 33332211 4567899999999999999743 222332 211110
Q ss_pred ccccccCCCCChhhhhhHHHHHHHHHHH--HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 427 KKEETRDSELPSHVEHYISHLLTVYEKA--EAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 427 ~~~d~~~~~~~~~~~~~~~~a~~iye~a--l~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
... ......+...++.+ +..+|.++..+..++-.....|++++|...+++|+ ...|+ ...|....
T Consensus 251 -~~~----------~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln~s-~~a~~llG 317 (372)
T 3ly7_A 251 -PLD----------EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLEMS-WLNYVLLG 317 (372)
T ss_dssp -CCC----------HHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCC-HHHHHHHH
T ss_pred -CCc----------hhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCC-HHHHHHHH
Confidence 000 12233334444432 24468889999988888888899999999999999 77764 45555656
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhh
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALE 541 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~ 541 (676)
.+....| +.+++.+.|.+|+...|...
T Consensus 318 ~~~~~~G----------~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 318 KVYEMKG----------MNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHTT----------CHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHCC----------CHHHHHHHHHHHHhcCCCcC
Confidence 6666556 47999999999999877543
No 212
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.084 Score=48.71 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=96.1
Q ss_pred chHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhhh----H----HHH-HHHHHHHHhhhhCCCCCCCcchHHHHHHH
Q 005817 522 DILSIFELLKCILTK--VSALESESLWLMALKFFMNQK----H----YFD-KLVEIALISVAKDGGGESGFSLPSAIINL 590 (676)
Q Consensus 522 ~~~~~~~~f~~Al~~--~~~~~~~~lW~~~l~~~~~~~----~----~~~-~~~~~a~~~~~~~~~~~~~~~~~~~y~~~ 590 (676)
.+...++.|++.|.. -..++.+.+|..|+.+.+.+- . .+- .++++++..+.....-.+-+-....++.+
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 467788889999987 445567889999998776442 1 133 78888887553322111112222233333
Q ss_pred HHH--hcCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHH
Q 005817 591 VIQ--KDGIQQAREMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTE 665 (676)
Q Consensus 591 ~~~--~g~~~~Ar~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE 665 (676)
.-. .++...++.+|.-+.. +......+|..++.+-...+ ++.+|.++|+.+++.... -..+--.|.+|+
T Consensus 87 a~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 87 INLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ------FFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 333 4557799999998754 44555679999998777777 899999999999997542 238888899998
Q ss_pred hhc
Q 005817 666 TKV 668 (676)
Q Consensus 666 ~~~ 668 (676)
.+.
T Consensus 161 ~R~ 163 (202)
T 3esl_A 161 DRL 163 (202)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.48 E-value=0.13 Score=55.72 Aligned_cols=172 Identities=10% Similarity=0.060 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhh-cChhhh
Q 005817 464 IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTK-VSALES 542 (676)
Q Consensus 464 lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~-~~~~~~ 542 (676)
++..-++...+.|++++|+.++++.....++.+...|...|....+.+....... ..+++++.++|.+.... +.++
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~-~~~l~~A~~lf~~M~~~G~~Pd-- 104 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP-NPGLSRGFDIFKQMIVDKVVPN-- 104 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC-CHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh-cchHHHHHHHHHHHHHhCCCCC--
Confidence 4556677788999999999999998855677777888888876654432111111 13578888999887764 4333
Q ss_pred HHHHHHHHHHHHhhh--HHHHHHHHHHHHh-hhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcC-CCCCHHHH
Q 005817 543 ESLWLMALKFFMNQK--HYFDKLVEIALIS-VAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLAL-PRPGLVLY 618 (676)
Q Consensus 543 ~~lW~~~l~~~~~~~--~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~-~p~~~~l~ 618 (676)
...|...+.-+.+.+ +.+..+++.+... +.|+ ...+...+.-..+.|+.++|..+|+..... ..++...|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty 178 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL 178 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 224555555554444 4566667665531 2222 122334566677899999999999999764 45667788
Q ss_pred HHHHHHHhhccCCCCccchHHHHHHHHHHHhh
Q 005817 619 QNCIELENNLASVGDKDSLVNARKLFESALAT 650 (676)
Q Consensus 619 ~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~ 650 (676)
...|..-...| +.++|..+|++.-+.
T Consensus 179 ~~Li~~~~~~g------~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 179 AALLKVSMDTK------NADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC------CHHHHHHHHHHHHHh
Confidence 88887777777 899999999998765
No 214
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.45 E-value=0.031 Score=48.90 Aligned_cols=140 Identities=11% Similarity=-0.084 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh------HHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 462 EDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS------VQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 462 ~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~------~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
..++...+..+...|++++|...+++++ ...|.. ...+...+......+ +.+++.+.|++++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLG----------EFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHH
Confidence 3567778888889999999999999998 654432 134444455554444 36777777777765
Q ss_pred hcChhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCC---
Q 005817 536 KVSALESESLWLMALKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPR--- 612 (676)
Q Consensus 536 ~~~~~~~~~lW~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p--- 612 (676)
..+...... +. .......+......|++++|...+++++...+
T Consensus 78 ~~~~~~~~~-~~---------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 78 LARQLKDRA-VE---------------------------------AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp HHHHTTCHH-HH---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCcH-HH---------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 432111000 00 00011223335567888888888888865421
Q ss_pred C---CHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 613 P---GLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 613 ~---~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
. ....+.....+....+ +.+.|...|+++++...
T Consensus 124 ~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 124 DRIGEGRACWSLGNAYTALG------NHDQAMHFAEKHLEISR 160 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHHT
T ss_pred chHhHHHHHHHHHHHHHHcc------CHHHHHHHHHHHHHHHH
Confidence 1 1223444445555556 77888888888887654
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.068 Score=56.16 Aligned_cols=168 Identities=11% Similarity=-0.004 Sum_probs=103.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhccCCChH-----------------HHHHHHHHHHHHhccccCCCCChhchHHHH
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSV-----------------QLWLLRISVEIRCVTRNSFSPSKADILSIF 527 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~-----------------~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~ 527 (676)
-+.-+.-+...|++++|.+.|.+++ ...|... ......+.++...| +.+++.
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~----------~~~~a~ 75 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLL-DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG----------AKDKLR 75 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT----------CHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC----------CHHHHH
Confidence 3445566678899999999999999 6666421 23445556665555 478888
Q ss_pred HHHHHHHhhc---ChhhhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhhhCCCCCCCcchHH---HHHHHHHHhcCHH
Q 005817 528 ELLKCILTKV---SALESESLWLMALKFFMNQK---HYFDKLVEIALISVAKDGGGESGFSLPS---AIINLVIQKDGIQ 598 (676)
Q Consensus 528 ~~f~~Al~~~---~~~~~~~lW~~~l~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~y~~~~~~~g~~~ 598 (676)
+.|.+++... +.......-...++.+.... +....+++.++........ ...+.. ..+......|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChH
Confidence 8899888643 22111111122233332221 3344455555543322221 223332 3456677899999
Q ss_pred HHHHHHHHHHcCC------CCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCC
Q 005817 599 QAREMYKRFLALP------RPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 599 ~Ar~iy~~al~~~------p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
+|..++++++... +....++...+.+....+ ++++|+.+|++++...+
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLR------NLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHHhh
Confidence 9999999986531 112346666667777777 99999999999998765
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.21 E-value=0.037 Score=48.92 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CchHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhCCCHHHH
Q 005817 138 SGVARILEIYRLAVMRFKGDIELWFKYMEFCRQRK----NGRMKKVLAQVIRFH-P-KVPGVWIYAAAWEFDHNLNVTAA 211 (676)
Q Consensus 138 ~~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~----~~~~~~~~~ral~~~-P-~~~~lW~~~a~~e~~~~~~~~~A 211 (676)
....+++.-|++.+...|.+.+...+|+--+.+.+ ..+...+|+..+... | +..+.++..+--.+ ..+++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHH
Confidence 45678889999999999999999999998777654 247889999999998 7 44566666666555 68899999
Q ss_pred HHHHHHHHHhCCCCHHHHH
Q 005817 212 RALMQNGLRVCPTSEELWV 230 (676)
Q Consensus 212 r~~~~ral~~~p~~~~lW~ 230 (676)
+..++++|+..|++.+.-.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999999865433
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.01 E-value=0.94 Score=48.85 Aligned_cols=160 Identities=9% Similarity=0.127 Sum_probs=113.4
Q ss_pred CcHHHHHHHHHHHHhc-CCCChhhHHHHHHHhccccCCCCCCCcCcchhHHHHHHHHHHHHhhc--cCchhHHHHHHHHH
Q 005817 344 QSDDMHDKILSDMQRD-FLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQKAIQVYEEALKN--VPSSMIFDLYTKFL 420 (676)
Q Consensus 344 ~~~~~a~~il~~~~~~-~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~~A~~~ye~al~~--~~~~~lw~~y~~~~ 420 (676)
+..+.|..+++++.+. .+-+..+|..+...+-..... ......+.+++|.++|++.... .|+...|...+...
T Consensus 40 G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~----~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA----TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC----SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch----hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3456777888877664 233455566555544221100 0011246789999999988765 35555665555544
Q ss_pred HHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHH
Q 005817 421 MDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMG-CLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQL 499 (676)
Q Consensus 421 ~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~-p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~l 499 (676)
.+ .|.++.|..+|++....+ ..+...|...+..+.+.|+.++|..++++.....+..+...
T Consensus 116 ~~------------------~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 116 VA------------------KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HH------------------HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred Hh------------------cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 43 477899999999988774 34677888899999999999999999999886566667788
Q ss_pred HHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 500 WLLRISVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 500 W~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
|...|....+.| +++++.++|++.-.
T Consensus 178 y~~Li~~~~~~g----------~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 178 LAALLKVSMDTK----------NADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHTT----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC----------CHHHHHHHHHHHHH
Confidence 999998888876 47888888888654
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.92 E-value=0.033 Score=45.00 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=58.6
Q ss_pred CCCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHH
Q 005817 458 GCLTEDIAHRYVTLYLQLGK---LDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCIL 534 (676)
Q Consensus 458 ~p~~~~lw~~~~~l~~~~~~---~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al 534 (676)
+|.++++|..|++.+...++ .++|..++++++ +..|+++..+..........| +.+++...+++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-~~dp~~~rA~~~lg~~~~~~g----------~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-QLEPYNEAALSLIANDHFISF----------RFQEAIDTWVLLL 70 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHCcCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHH
Confidence 58889999999998875544 688999999999 889999988888888887766 4788888888888
Q ss_pred hhcCh
Q 005817 535 TKVSA 539 (676)
Q Consensus 535 ~~~~~ 539 (676)
...|.
T Consensus 71 ~~~p~ 75 (93)
T 3bee_A 71 DSNDP 75 (93)
T ss_dssp TCCCT
T ss_pred hhCCC
Confidence 87665
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.58 E-value=0.75 Score=46.99 Aligned_cols=156 Identities=9% Similarity=-0.031 Sum_probs=97.4
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHhccc--CcHHHHHHHHHHHHhcCCCChhhHHHHHHHhccccCCCCCCCcCcchhHHH
Q 005817 317 SGAVEALPSSFNLRQRFFEIVEATNLA--QSDDMHDKILSDMQRDFLVDPKYWDWLARLKMTDSVSKDGTSEDIVPSQMQ 394 (676)
Q Consensus 317 ~~Al~~~p~~~~~~~~~~~~~~~fe~~--~~~~~a~~il~~~~~~~p~~~~~w~~la~~~~~~~~~~~~~~~~~~~~~~~ 394 (676)
+++....|.+.+.|..++.....+... .....+..+++++++..|+...+|..++..++...... +. ......
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~-~~----~~~~~~ 258 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH-PL----DEKQLA 258 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-CC----CHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC-CC----chhhHH
Confidence 345566788877777666554333211 13467889999999999999888775554443210000 00 012233
Q ss_pred HHHHHHHHHh--hccCchh-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005817 395 KAIQVYEEAL--KNVPSSM-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL 471 (676)
Q Consensus 395 ~A~~~ye~al--~~~~~~~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l 471 (676)
.....++.+. ...|... .+..+.-... ..|+++.|...+++|+..+|. ...|...+..
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l------------------~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~ 319 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSAL------------------VKGKTDESYQAINTGIDLEMS-WLNYVLLGKV 319 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHH------------------HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 3333333221 2223322 3333322121 147799999999999999874 5667778888
Q ss_pred HHhcCCHHHHHHHHHHHhhccCCChH
Q 005817 472 YLQLGKLDEARKLAAKLCSGKLSDSV 497 (676)
Q Consensus 472 ~~~~~~~~~A~~l~~~al~~~~P~~~ 497 (676)
+.-.|++++|...|++|+ ...|...
T Consensus 320 ~~~~G~~~eA~e~~~~Al-rL~P~~~ 344 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAF-NLRPGAN 344 (372)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHSCSHH
T ss_pred HHHCCCHHHHHHHHHHHH-hcCCCcC
Confidence 889999999999999999 8888764
No 220
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=94.83 E-value=0.37 Score=43.05 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHhhh------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHH
Q 005817 528 ELLKCILTKVSALESESLWLMALKFFMNQK------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAR 601 (676)
Q Consensus 528 ~~f~~Al~~~~~~~~~~lW~~~l~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar 601 (676)
+.|+..|.....++.+.+|..|+.+.+.+- ..+..++++++..+.....-.+-+-....++.+.-.. +.++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~ 80 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPL 80 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHH
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHH
Confidence 347777775555667889999988776532 1245678887775533221101112222333333223 3477
Q ss_pred HHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHHhhc
Q 005817 602 EMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETKV 668 (676)
Q Consensus 602 ~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE~~~ 668 (676)
.+|.-+.. +......+|..++.+-...+ +..+|.++|..+++.... ...+--.|..|+...
T Consensus 81 ~if~~L~~~~IG~~~AlfY~~wA~~lE~~~------~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 81 DMYSYLHNQGIGVSLAQFYISWAEEYEARE------NFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHTTSSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 78887754 34445678999888766777 899999999999997642 237888888887654
No 221
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.68 E-value=0.15 Score=54.98 Aligned_cols=85 Identities=7% Similarity=0.012 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHhhccC----chh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----C
Q 005817 390 PSQMQKAIQVYEEALKNVP----SSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----G 458 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~----~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~ 458 (676)
++++++|...|+++|+... ... +-..+-.+-.-.. .+|.+++|..+|++++.. +
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~---------------~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS---------------YLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---------------HhcCHHHHHHHHHHHHHHHHHHcC
Confidence 4788999999999997521 111 2222222211111 257789999999998864 5
Q ss_pred CCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 459 CLTED---IAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 459 p~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
|.+|+ .+...+.++..+|++++|..++++|+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66655 57778888999999999999999998
No 222
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=94.16 E-value=0.84 Score=42.78 Aligned_cols=136 Identities=8% Similarity=0.095 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhhh-------HHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHh
Q 005817 523 ILSIFELLKCILTKV-SALESESLWLMALKFFMNQK-------HYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQK 594 (676)
Q Consensus 523 ~~~~~~~f~~Al~~~-~~~~~~~lW~~~l~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~ 594 (676)
++..+..|+..|... ..++.+.+|..|+.+.+..- ..+..++++++..+.....-.+-+-....++.+.
T Consensus 51 l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya--- 127 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV--- 127 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH---
Confidence 566777899999874 34567889999998876542 1256788888876533211101111111222222
Q ss_pred cCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhCCC-CchHHHHHHHHHhh
Q 005817 595 DGIQQAREMYKRFLA--LPRPGLVLYQNCIELENNLASVGDKDSLVNARKLFESALATYDQ-NTSLWRDYYSTETK 667 (676)
Q Consensus 595 g~~~~Ar~iy~~al~--~~p~~~~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~~~-~~~lW~~y~~fE~~ 667 (676)
...+.++.+|.-+.. +......+|..++.+-...+ ++..|.++|..+++.... -..+--.|.+|+.+
T Consensus 128 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g------~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 128 NYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRG------LFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp TTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 123577888887754 34455679999998777777 899999999999998653 23888889999887
No 223
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.03 E-value=0.95 Score=39.05 Aligned_cols=115 Identities=15% Similarity=0.063 Sum_probs=81.8
Q ss_pred chhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHH
Q 005817 389 VPSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRY 468 (676)
Q Consensus 389 ~~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~ 468 (676)
+.+++++|...|+++.+.-+.... +.. .+.. ...+++|...|++|... .++..+...
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~~~a~----lg~---~y~~--------------g~~~~~A~~~~~~Aa~~--g~~~a~~~L 63 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNEMFGC----LSL---VSNS--------------QINKQKLFQYLSKACEL--NSGNGCRFL 63 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHH----HHH---HTCT--------------TSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHcCCCHhhh----HHH---HHHc--------------CCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 357899999999999976543322 111 1111 13356699999999987 567888899
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh-ccccCCCCChhchHHHHHHHHHHHhh
Q 005817 469 VTLYLQ----LGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRC-VTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 469 ~~l~~~----~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~-~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
+.++.. .+++++|...+++|+ .. .++........+...- +. + .|.+++.+.|++|...
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa-~~--g~~~a~~~Lg~~y~~G~g~-----~--~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKAC-GL--NDQDGCLILGYKQYAGKGV-----V--KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHH-HT--TCHHHHHHHHHHHHHTSSS-----C--CCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHH-cC--CCHHHHHHHHHHHHCCCCC-----C--cCHHHHHHHHHHHHHC
Confidence 999988 789999999999999 43 4555566666555541 11 1 2689999999999875
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.42 E-value=0.47 Score=41.83 Aligned_cols=89 Identities=9% Similarity=0.096 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhccC-C-ChHHHHHHHHHHHHHhccccC
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLG---KLDEARKLAAKLCSGKL-S-DSVQLWLLRISVEIRCVTRNS 515 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~---~~~~A~~l~~~al~~~~-P-~~~~lW~~~i~l~~~~~~~~~ 515 (676)
...+..++..|++.+..++.+.+..+.|+-.+.+.+ +++++..+++..+ +.. | ...+.+...+-...+.+
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~~p~~~rd~lY~LAv~~~kl~---- 85 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK---- 85 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHHHHHcc----
Confidence 456889999999999999999999999999999988 5668999999999 556 6 44566655554445554
Q ss_pred CCCChhchHHHHHHHHHHHhhcChh
Q 005817 516 FSPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 516 ~~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
+.+++++.++.+|+.-|..
T Consensus 86 ------~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 86 ------EYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp ------CHHHHHHHHHHHHHHCTTC
T ss_pred ------CHHHHHHHHHHHHhcCCCC
Confidence 5899999999999877743
No 225
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.92 E-value=0.22 Score=53.69 Aligned_cols=84 Identities=7% Similarity=-0.062 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCChHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRI 504 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~-----~p~~~---~lw~~~~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i 504 (676)
+|.+++|..+|++++.. ++.++ ..+...+..+..+|++++|..++++++ .. +|.-...+...+
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-DGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHH
Confidence 57789999999999875 45555 457778888999999999999999988 42 334445555556
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHh
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILT 535 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~ 535 (676)
.++...| +.+++..+|++|+.
T Consensus 401 ~~~~~~G----------~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 401 LTNWHAG----------HIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHTT----------CHHHHHHHHHHHHH
T ss_pred HHHHHCC----------CHHHHHHHHHHHHH
Confidence 6666666 37888888888876
No 226
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.73 E-value=0.24 Score=52.35 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHc-----CCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCChHHHHHHHHH
Q 005817 442 HYISHLLTVYEKAEAM-----GCLTED---IAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRIS 505 (676)
Q Consensus 442 ~~~~~a~~iye~al~~-----~p~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i~ 505 (676)
|.+++|..+|++++.. +|.++. .+...+..+..+|++++|..++++++ .. +|+-...+...+.
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-KPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHH
Confidence 5688999999999874 566654 46667888899999999999999988 42 3444455566666
Q ss_pred HHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 506 VEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 506 l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
++..+| +.+++..+|++|+..
T Consensus 391 ~~~~qg----------~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLE----------NKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTT----------CHHHHHHHHHHHHHH
T ss_pred HHHhcc----------CHHHHHHHHHHHHHH
Confidence 666666 378888888888763
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.72 E-value=0.82 Score=37.26 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHHHHHHcc-CchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005817 162 FKYMEFCRQRK-NGRMKKVLAQVIRFH-------PKVPGVWIYAAAWEFDHNLNVTAARALMQNGLRVCPTSEELWVEYL 233 (676)
Q Consensus 162 ~~y~~~~~~~~-~~~~~~~~~ral~~~-------P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~~~p~~~~lW~~y~ 233 (676)
...+.++...+ +..+..-|+.|+... +..+.++..++...+ ..|+++.|...++++++..|++..+.....
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34455555555 577888888888864 235778888888776 688999999999999999999987755554
Q ss_pred HH
Q 005817 234 RM 235 (676)
Q Consensus 234 ~~ 235 (676)
-+
T Consensus 88 ~~ 89 (104)
T 2v5f_A 88 YF 89 (104)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.08 E-value=0.57 Score=38.22 Aligned_cols=63 Identities=19% Similarity=-0.041 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAM-------GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRI 504 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~-------~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i 504 (676)
.+++..|..-|+.|+.. ++..++++..++..+.+.|+++.|...+++++ +..|++..+.....
T Consensus 18 ~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al-~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-ELDPEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCCHHHHhhHH
Confidence 36788999999999875 23468899999999999999999999999999 88999877654443
No 229
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.49 E-value=3.2 Score=35.56 Aligned_cols=82 Identities=18% Similarity=0.045 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 005817 392 QMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHRYVTL 471 (676)
Q Consensus 392 ~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~~~~l 471 (676)
.+++|...|++|.+.-........- .....-. . ..+++++|...|++|... .++......+.+
T Consensus 40 ~~~~A~~~~~~Aa~~g~~~a~~~Lg-~~y~~G~---g-----------~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 102 (138)
T 1klx_A 40 NKQKLFQYLSKACELNSGNGCRFLG-DFYENGK---Y-----------VKKDLRKAAQYYSKACGL--NDQDGCLILGYK 102 (138)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHCS---S-----------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-HHHHcCC---C-----------CCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3566999999998753222121111 1111100 0 135689999999999886 567788888888
Q ss_pred HHh----cCCHHHHHHHHHHHhh
Q 005817 472 YLQ----LGKLDEARKLAAKLCS 490 (676)
Q Consensus 472 ~~~----~~~~~~A~~l~~~al~ 490 (676)
+.. .+++++|...+++|+.
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHH
Confidence 888 7899999999999983
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.56 E-value=0.6 Score=49.28 Aligned_cols=85 Identities=8% Similarity=-0.010 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhcc--------CCChHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAM-----GCLTE---DIAHRYVTLYLQLGKLDEARKLAAKLCSGK--------LSDSVQLWLLRI 504 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~-----~p~~~---~lw~~~~~l~~~~~~~~~A~~l~~~al~~~--------~P~~~~lW~~~i 504 (676)
+|.+++|...|++++.. +|.++ ..+...+..+...|++++|..++++++ .. +|.-...+...+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM-EPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhHHHHcCCCChHHHHHHHHHH
Confidence 46789999999999975 45554 456677888889999999999999988 42 333445555556
Q ss_pred HHHHHhccccCCCCChhchHHHHHHHHHHHhh
Q 005817 505 SVEIRCVTRNSFSPSKADILSIFELLKCILTK 536 (676)
Q Consensus 505 ~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~ 536 (676)
.++...| +.+++..+|++|+..
T Consensus 379 ~~~~~~g----------~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 379 KLQLHQG----------MFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHTT----------CHHHHHHHHHHHHHH
T ss_pred HHHHhcC----------CHHHHHHHHHHHHHH
Confidence 6666665 378888888888763
No 231
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.96 E-value=1 Score=47.46 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhhcc----Cch-h-HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----CC
Q 005817 391 SQMQKAIQVYEEALKNV----PSS-M-IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----GC 459 (676)
Q Consensus 391 ~~~~~A~~~ye~al~~~----~~~-~-lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~p 459 (676)
+++++|...|+++|... ... . +-..+-.+-.-.. .+|++++|...|++++.. +|
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~---------------~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL---------------YMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH---------------hhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 56889999999998742 211 1 2222222221111 257889999999999864 56
Q ss_pred CcHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 460 LTED---IAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 460 ~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
.+|+ .+...+.++..+|++++|..++++|+
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6665 47778888999999999999999999
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.14 E-value=3.6 Score=34.80 Aligned_cols=89 Identities=9% Similarity=-0.002 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----chHHHHHHHHHHhC-CCCH--HHHHHHHHHHHHhCCCHHHH
Q 005817 139 GVARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFH-PKVP--GVWIYAAAWEFDHNLNVTAA 211 (676)
Q Consensus 139 ~~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~-P~~~--~lW~~~a~~e~~~~~~~~~A 211 (676)
...+.+.-|.+++...+.+.+.=..|+--+.+.+. .+...+++..+... |... -++..++-+. ..|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y--klg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY--RLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--HhhhHHHH
Confidence 45677888999988888888888888877666542 34678888888776 5222 2444443343 68899999
Q ss_pred HHHHHHHHHhCCCCHHHH
Q 005817 212 RALMQNGLRVCPTSEELW 229 (676)
Q Consensus 212 r~~~~ral~~~p~~~~lW 229 (676)
|..++..|+..|++.++.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999986643
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=84.65 E-value=2.8 Score=44.06 Aligned_cols=85 Identities=8% Similarity=-0.038 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHhhcc----Cchh--HHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHc-----C
Q 005817 390 PSQMQKAIQVYEEALKNV----PSSM--IFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAM-----G 458 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~----~~~~--lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~-----~ 458 (676)
.+++++|...|++++... +... +-..+-.+-.-. ..+|.+++|...|++++.. +
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y---------------~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC---------------INLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH---------------HhhccHHHHHHHHHHHHHhHHHHcC
Confidence 357899999999999752 2221 222221211111 1257788999999988864 5
Q ss_pred CCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 459 CLTED---IAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 459 p~~~~---lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
|.+|+ .+...+.++...|++++|..++++|+
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555 57778888999999999999999998
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.37 E-value=5.4 Score=44.90 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 463 DIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 463 ~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
++...-++|++..|+++-|+.+.++|+ ...|....-|...+..++..++
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV-~~aPseF~tW~~La~vYi~l~d 386 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTST-ELALDSFESWYNLARCHIKKEE 386 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHH-hcCchhhHHHHHHHHHHHHhcc
Confidence 466667999999999999999999999 8899999999999999998875
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=73.37 E-value=40 Score=29.02 Aligned_cols=85 Identities=7% Similarity=-0.022 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----chHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhCCCHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHPKVPG--VWIYAAAWEFDHNLNVTAARA 213 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~P~~~~--lW~~~a~~e~~~~~~~~~Ar~ 213 (676)
..+.+.-|++-..- +-+.+.=.+|+--+.+.+. .+...+++..+...|.... ++..++-+. ..|++++||+
T Consensus 22 L~~lr~qY~~E~~~-~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y--kl~~Y~~Ar~ 98 (144)
T 1y8m_A 22 LEILRQQVVSEGGP-TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY--KLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHHTTST-TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH--TTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH--HhhhHHHHHH
Confidence 44555666654222 3367777788866666542 4678899999999996544 444444443 6899999999
Q ss_pred HHHHHHHhCCCCHH
Q 005817 214 LMQNGLRVCPTSEE 227 (676)
Q Consensus 214 ~~~ral~~~p~~~~ 227 (676)
+.+..|+..|++.+
T Consensus 99 y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 99 YVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHTCCCCHH
T ss_pred HHHHHHhcCCCcHH
Confidence 99999999999854
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=70.06 E-value=40 Score=28.30 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhccC-CChHHHHHHH-HHHHHHhccccCC
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDE---ARKLAAKLCSGKL-SDSVQLWLLR-ISVEIRCVTRNSF 516 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~---A~~l~~~al~~~~-P~~~~lW~~~-i~l~~~~~~~~~~ 516 (676)
..+..++..|.++...++.+.+.-+.|+--+.+.++... ++.+++..+ +.. |....-..-+ +-...+.+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~~p~~~Rd~lY~LAvg~yklg----- 88 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKGSKEEQRDYVFYLAVGNYRLK----- 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHhh-----
Confidence 457788999999998888889999999999998887666 889999998 554 5322222222 22233444
Q ss_pred CCChhchHHHHHHHHHHHhhcChh
Q 005817 517 SPSKADILSIFELLKCILTKVSAL 540 (676)
Q Consensus 517 ~p~~~~~~~~~~~f~~Al~~~~~~ 540 (676)
+.+++++.++..|+.-|.+
T Consensus 89 -----~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 89 -----EYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp -----CHHHHHHHHHHHHHHCTTC
T ss_pred -----hHHHHHHHHHHHHHhCCCC
Confidence 4788888888888876643
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=65.59 E-value=47 Score=37.32 Aligned_cols=47 Identities=6% Similarity=-0.088 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAK 487 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~ 487 (676)
+++++-|..+-++|+..-|.+..-|...+..+...|+++.|+-.+..
T Consensus 350 K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 350 RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999866554
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=61.58 E-value=2e+02 Score=31.94 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=77.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcChhhhHHHHHHH
Q 005817 470 TLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSALESESLWLMA 549 (676)
Q Consensus 470 ~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~~~~~~lW~~~ 549 (676)
.+.+..|+++.|.++.+ ...+...|...+++..+.+ +++.+.+.|.++= +...+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~------~~~~~~~W~~la~~al~~~----------~~~~A~~~y~~~~------d~~~l~~l~ 717 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT------DESAEMKWRALGDASLQRF----------NFKLAIEAFTNAH------DLESLFLLH 717 (814)
T ss_dssp HHHHHHTCHHHHHHHHT------TCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHT------CHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH------hhCcHhHHHHHHHHHHHcC----------CHHHHHHHHHHcc------ChhhhHHHH
Confidence 34467789999877632 2356789999999998876 4788877777651 111222211
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhCCCCCCCcchHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcc
Q 005817 550 LKFFMNQKHYFDKLVEIALISVAKDGGGESGFSLPSAIINLVIQKDGIQQAREMYKRFLALPRPGLVLYQNCIELENNLA 629 (676)
Q Consensus 550 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~Ar~iy~~al~~~p~~~~l~~~~i~lE~~~~ 629 (676)
. .....+.+.++.+.+.. .+ ... .......+.|++++|.++|.++-. |...+.|-...+
T Consensus 718 ~--~~~~~~~~~~~~~~a~~-----~~-----~~~-~A~~~~~~~g~~~~a~~~~~~~~~--------~~~A~~lA~~~~ 776 (814)
T 3mkq_A 718 S--SFNNKEGLVTLAKDAET-----TG-----KFN-LAFNAYWIAGDIQGAKDLLIKSQR--------FSEAAFLGSTYG 776 (814)
T ss_dssp H--HTTCHHHHHHHHHHHHH-----TT-----CHH-HHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTT
T ss_pred H--HcCCHHHHHHHHHHHHH-----cC-----chH-HHHHHHHHcCCHHHHHHHHHHcCC--------hHHHHHHHHHhC
Confidence 1 11111233333333221 11 222 223335568999999999888644 555666655554
Q ss_pred CCCCccc--hHHHHHHHHHHHhhCC
Q 005817 630 SVGDKDS--LVNARKLFESALATYD 652 (676)
Q Consensus 630 ~~~~~~~--~~~aR~lye~al~~~~ 652 (676)
.. + +..+.+.|...|...+
T Consensus 777 ~~----~~~i~~~~~~~~~~L~~~~ 797 (814)
T 3mkq_A 777 LG----DNEVNDIVTKWKENLILNG 797 (814)
T ss_dssp CC----HHHHHHHHHHHHHHHHTTT
T ss_pred CC----hHHHHHHHHHHHHHHHhcc
Confidence 22 4 5677777777766544
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.36 E-value=63 Score=27.39 Aligned_cols=85 Identities=7% Similarity=-0.037 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----chHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCCHHHHHH
Q 005817 140 VARILEIYRLAVMRFKGDIELWFKYMEFCRQRKN----GRMKKVLAQVIRFHPKV--PGVWIYAAAWEFDHNLNVTAARA 213 (676)
Q Consensus 140 ~~~~~~iyeral~~~p~~~~lW~~y~~~~~~~~~----~~~~~~~~ral~~~P~~--~~lW~~~a~~e~~~~~~~~~Ar~ 213 (676)
..+.+.-|++-+.-.| +.+.=..|+=-+.+.+. .+...+++..+...|.. .-++..++... ..|+++.||+
T Consensus 23 L~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y--klgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY--KLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--HHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH--HhhhHHHHHH
Confidence 4455566666443334 56676777755555431 36788999999998843 23444444444 5789999999
Q ss_pred HHHHHHHhCCCCHH
Q 005817 214 LMQNGLRVCPTSEE 227 (676)
Q Consensus 214 ~~~ral~~~p~~~~ 227 (676)
..++.|+..|++.+
T Consensus 100 y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 100 YVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHTTCTTCHH
T ss_pred HHHHHHhhCCCCHH
Confidence 99999999999854
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=57.82 E-value=87 Score=26.53 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCc-HHHHHHH
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLT-EDIAHRY 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~-~~lw~~~ 468 (676)
...+...++.|++-+...|+...-..|+--... .. ...++.+++.+++..+..+|.. -+.+...
T Consensus 20 ~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~-----S~----------~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyL 84 (134)
T 3o48_A 20 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIK-----ST----------DVNDERLGVKILTDIYKEAESRRRECLYYL 84 (134)
T ss_dssp HHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHH-----SS----------CHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHc-----CC----------CHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 467788888887754444444422233322222 11 1356788999999988887754 4555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
+--..+.|++++|+...+.++ +.-|.+..
T Consensus 85 Avg~yklgdY~~Ar~y~d~lL-~~eP~N~Q 113 (134)
T 3o48_A 85 TIGCYKLGEYSMAKRYVDTLF-EHERNNKQ 113 (134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-TTCTTCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH-hhCCCCHH
Confidence 666779999999999999999 88888753
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.63 E-value=35 Score=32.83 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
.+.+..+++.....+..+|.+.++-..+++++.-.|++++|.+-++.+. +..|..
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a-~l~p~~ 64 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI-KLFPEY 64 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCGGG
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchh
Confidence 4678999999999999999999999999999999999999999999888 777874
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=55.05 E-value=83 Score=27.98 Aligned_cols=54 Identities=13% Similarity=-0.044 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHH-----------------cCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCh
Q 005817 442 HYISHLLTVYEKAEA-----------------MGCLTED-IAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDS 496 (676)
Q Consensus 442 ~~~~~a~~iye~al~-----------------~~p~~~~-lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~ 496 (676)
+++.+|...++..+. .+|.+.+ ++..++.++.+.|+.++|...+.+.- ...|-.
T Consensus 76 KdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf-~~~~lf 147 (242)
T 3kae_A 76 KDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF-GKSFLF 147 (242)
T ss_dssp TCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCH
T ss_pred HHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc-CCcccc
Confidence 346666666666662 2345555 46678999999999999999999888 666653
No 243
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=50.74 E-value=1.1e+02 Score=35.59 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhccccCC
Q 005817 441 EHYISHLLTVYEKAEAM----GCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVTRNSF 516 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~----~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~~~~~ 516 (676)
.|.+++|..++...... ...+...|-..+.-+.+.|+.++|..++++.....+..+...+...|.-.-+.|.
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~---- 215 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ---- 215 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----
Confidence 47789999999764421 2446778999999999999999999999998866676777777777776655543
Q ss_pred CCChhchHHHHHHHHHHHh
Q 005817 517 SPSKADILSIFELLKCILT 535 (676)
Q Consensus 517 ~p~~~~~~~~~~~f~~Al~ 535 (676)
..+++.++|++...
T Consensus 216 -----~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 216 -----DAGTIERCLEQMSQ 229 (1134)
T ss_dssp -----CHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHH
Confidence 23455555555553
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=44.34 E-value=90 Score=34.91 Aligned_cols=43 Identities=9% Similarity=-0.167 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005817 442 HYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLC 489 (676)
Q Consensus 442 ~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al 489 (676)
++++.|.++.+ ...++..|...+++.++.++++.|...|.++=
T Consensus 666 ~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 666 GQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45666666543 25678999999999999999999999999863
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.91 E-value=1.5e+02 Score=25.34 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCCCcHHHHHH-H
Q 005817 390 PSQMQKAIQVYEEALKNVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGCLTEDIAHR-Y 468 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p~~~~lw~~-~ 468 (676)
...+...++.|++-....++...-..|+--... .. ...+..+.+.+++..+...|....=++. .
T Consensus 19 ~eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~-----S~----------~~~di~~GI~LLe~l~~~~~~~~RdcLYyL 83 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIK-----ST----------DVNDERLGVKILTDIYKEAESRRRECLYYL 83 (144)
T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHH-----SS----------SHHHHHHHHHHHHHHHHHCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-----CC----------CHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 567888888887653334444433333322222 11 1356788999999998888865433333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhccCCChHH
Q 005817 469 VTLYLQLGKLDEARKLAAKLCSGKLSDSVQ 498 (676)
Q Consensus 469 ~~l~~~~~~~~~A~~l~~~al~~~~P~~~~ 498 (676)
+--..+.|++++|+...+.++ +.-|.+..
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL-~~eP~n~Q 112 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLF-EHERNNKQ 112 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH-HTCCCCHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH-hcCCCcHH
Confidence 444569999999999999999 88888743
No 246
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=41.25 E-value=63 Score=24.82 Aligned_cols=44 Identities=14% Similarity=-0.083 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVE 507 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~ 507 (676)
....++|..+..+|+.. .+.|++++|..+|..|+ +.|...+..+
T Consensus 13 ~~~~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~ai--------e~l~~alk~e 56 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKA---------------DKEGNAEEAITNYKKAI--------EVLAQLVSLY 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHH--------HHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHH--------HHHHHHHHHC
Confidence 45677888888888765 47899999999999999 4566555443
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=41.20 E-value=63 Score=32.99 Aligned_cols=44 Identities=11% Similarity=-0.004 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 005817 467 RYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCV 511 (676)
Q Consensus 467 ~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~ 511 (676)
..++.+...|++.+|...+..++ ..+|.+..+|...+..+...|
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~-~~~P~~E~~~~~lm~al~~~G 219 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALT-FEHPYREPLWTQLITAYYLSD 219 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcC
Confidence 34555666777777777777777 667777777777776666555
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=41.09 E-value=81 Score=32.16 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 005817 173 NGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVTAARALMQNGLR 220 (676)
Q Consensus 173 ~~~~~~~~~ral~~~P~~~~lW~~~a~~e~~~~~~~~~Ar~~~~ral~ 220 (676)
+..+...+.+++..+|.+..+|..++.... ..|+...|...|++.-+
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~-~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYY-LSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 355666777777777777777777777764 56777777766666543
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=37.95 E-value=3.4e+02 Score=27.59 Aligned_cols=167 Identities=16% Similarity=0.056 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcc---CCC--hHHHHHHHHHHHHHhccccCCCCChhchHHHHHHHHHHHhhcCh
Q 005817 465 AHRYVTLYLQLGKLDEARKLAAKLCSGK---LSD--SVQLWLLRISVEIRCVTRNSFSPSKADILSIFELLKCILTKVSA 539 (676)
Q Consensus 465 w~~~~~l~~~~~~~~~A~~l~~~al~~~---~P~--~~~lW~~~i~l~~~~~~~~~~~p~~~~~~~~~~~f~~Al~~~~~ 539 (676)
.+..++++.+.|+.++...++.... .- .|. ..++-...++..... | +..+...++..++++-...
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kak~~k~v~~l~~~~~~~-------~--~~~~~~~~~~~~~~~~a~~ 91 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTR-PFLSSISKAKAAKLVRSLVDMFLDM-------D--AGTGIEVQLCKDCIEWAKQ 91 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTT-TGGGGSCHHHHHHHHHHHHHHHTTS-------C--CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHhcC-------C--CcHHHHHHHHHHHHHHHHH
Confidence 3567888999999999888877654 32 332 234445555444322 1 1345556677777754322
Q ss_pred hhhHHHHHH------HHHHHHhhh--HHHHHHHHHHHHhhhhCCCCCCCcchHHHH---HHHHHHhcCHHHHHHHHHHHH
Q 005817 540 LESESLWLM------ALKFFMNQK--HYFDKLVEIALISVAKDGGGESGFSLPSAI---INLVIQKDGIQQAREMYKRFL 608 (676)
Q Consensus 540 ~~~~~lW~~------~l~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~y---~~~~~~~g~~~~Ar~iy~~al 608 (676)
+ ...|.. .+..+...+ ..+-+++......+...+. +.-+...| +++....+|+.+++..|.+|.
T Consensus 92 ~--~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 92 E--KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDD---KNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2 223421 122222222 2344455555554543221 22333344 345667899999999999995
Q ss_pred c----C-CCCCHH--HHHHHHHHHh-hccCCCCccchHHHHHHHHHHHhhCC
Q 005817 609 A----L-PRPGLV--LYQNCIELEN-NLASVGDKDSLVNARKLFESALATYD 652 (676)
Q Consensus 609 ~----~-~p~~~~--l~~~~i~lE~-~~~~~~~~~~~~~aR~lye~al~~~~ 652 (676)
. . +||... +.....-+.. ..+ +++.|...|-.++..|.
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~r------dyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADER------DFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHT
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhcc------CHHHHHHHHHHHHhccc
Confidence 3 2 333222 3333334444 444 89999999988887776
No 250
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.06 E-value=2e+02 Score=24.66 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005817 441 EHYISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCS 490 (676)
Q Consensus 441 ~~~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~ 490 (676)
+|..++.-.++...+...+.+|++.+..+.-+.+.|+..+|..++.+|+.
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 35567777888876677788899999999999999999999999999994
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=36.81 E-value=3.5e+02 Score=27.46 Aligned_cols=60 Identities=18% Similarity=0.069 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHHhhccCCCCccchHHHHHHHHHHHhhC
Q 005817 586 AIINLVIQKDGIQQAREMYKRFLALPRP---GL---VLYQNCIELENNLASVGDKDSLVNARKLFESALATY 651 (676)
Q Consensus 586 ~y~~~~~~~g~~~~Ar~iy~~al~~~p~---~~---~l~~~~i~lE~~~~~~~~~~~~~~aR~lye~al~~~ 651 (676)
..+.+....|++.+|.+++.+.+..+.. +. .++..-+++...++ +..++|+.|.+|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~------n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALS------NLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHhhh
Confidence 3577788999999999999988753222 22 23444444445556 8999999999997764
No 252
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.16 E-value=1.2e+02 Score=23.07 Aligned_cols=41 Identities=15% Similarity=-0.029 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHH
Q 005817 443 YISHLLTVYEKAEAMGCLTEDIAHRYVTLYLQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISV 506 (676)
Q Consensus 443 ~~~~a~~iye~al~~~p~~~~lw~~~~~l~~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l 506 (676)
..++|..+..+|+.. .+.|++++|+.+|..|+ +.|...+..
T Consensus 7 ~~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~ai--------e~l~~~lk~ 47 (83)
T 2v6y_A 7 LEDMARKYAILAVKA---------------DKEGKVEDAITYYKKAI--------EVLSQIIVL 47 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHH--------HHHHHHHHH
Confidence 356777788887654 47899999999999999 455555543
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=26.08 E-value=4.9e+02 Score=30.40 Aligned_cols=94 Identities=6% Similarity=-0.073 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhh-----ccCchhHHHHHHHHHHHHhcCccccccCCCCChhhhhhHHHHHHHHHHHHHcCC-CcHH
Q 005817 390 PSQMQKAIQVYEEALK-----NVPSSMIFDLYTKFLMDMIAPKKEETRDSELPSHVEHYISHLLTVYEKAEAMGC-LTED 463 (676)
Q Consensus 390 ~~~~~~A~~~ye~al~-----~~~~~~lw~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~a~~iye~al~~~p-~~~~ 463 (676)
.|++++|..+|++.-+ -.|+...|...++-.-+ .|.++.|..+|++....+. .+.-
T Consensus 140 ~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck------------------~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR------------------QGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCcHH
Confidence 4779999999966432 23555556555543332 4779999999999988753 3566
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHhhccCCChHHHHH
Q 005817 464 IAHRYVTLYLQLGK-LDEARKLAAKLCSGKLSDSVQLWL 501 (676)
Q Consensus 464 lw~~~~~l~~~~~~-~~~A~~l~~~al~~~~P~~~~lW~ 501 (676)
.|...+.-+.+.|. .++|..++++.....+..+...+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 77888888888887 578888988887555555544444
No 254
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=23.10 E-value=4e+02 Score=23.64 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=23.5
Q ss_pred HhcCCHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhcc
Q 005817 473 LQLGKLDEARKLAAKLCSGKLSDSVQLWLLRISVEIRCVT 512 (676)
Q Consensus 473 ~~~~~~~~A~~l~~~al~~~~P~~~~lW~~~i~l~~~~~~ 512 (676)
++.|+++.|..+.+.+ ++...|....+.....++
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn 49 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGN 49 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCC
Confidence 5677888887776553 346778888877777663
Done!