BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005818
(676 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 201/330 (60%), Gaps = 7/330 (2%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
+L+TG GFI S+ ++ +P+++++ +DKL Y SN NL P + F+KGDVA
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVAD 65
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
+LV L K+D ++H AA++HVD S + F +N+ GT+ LLE+ + RF+
Sbjct: 66 YELVKE--LVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFV 123
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 189
HVSTDEVYG+ + + N +L+P++PYSATKA ++MLV+ + R+Y L TR N
Sbjct: 124 HVSTDEVYGDILKGSFTEN---DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTN 180
Query: 190 VYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVY 249
YGP QFPEKLIPK I+ A G +PI+G G NVR +LY ED A + +L KGE +Y
Sbjct: 181 NYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGESREIY 240
Query: 250 NIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKL-KQLGWYERVT 308
NI +E+ ++V I +L + I+ VE+RP +D RY LD K+ + L W + T
Sbjct: 241 NISAGEEKTNLEVVKIILRLMG-KGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYT 299
Query: 309 WEEGLQKTMKWYISNPDWWGDVSGALLPHP 338
++EG++KT+ WY+ N WW + + HP
Sbjct: 300 FDEGIKKTIDWYLKNEWWWKPLVDERILHP 329
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 195/320 (60%), Gaps = 5/320 (1%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
NIL+TG AGFI S+ + + +Y YKI+ D L Y NL N+ + PN+ F+KG++
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQ 85
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRF 128
+ +L+ ++ + I++FAA++HVD S N F N+ GT LLE K IK
Sbjct: 86 NGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-L 144
Query: 129 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 188
+ VSTDEVYG + E + L P +PYS++KA A+ + +AY ++Y LPVI TR +
Sbjct: 145 VQVSTDEVYGSLGKTGRFT--EETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCS 202
Query: 189 NVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHV 248
N YGP Q+PEKLIP + A++GK LP++GDG NVR +L+ D A D +LHKG VG V
Sbjct: 203 NNYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRVGEV 262
Query: 249 YNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLGWYERV 307
YNIG E+ ++V I L I++V +R +D+RY ++ +K K + W +
Sbjct: 263 YNIGGNNEKTNVEVVEQIITLLG-KTKKDIEYVTDRLGHDRRYAINAEKXKNEFDWEPKY 321
Query: 308 TWEEGLQKTMKWYISNPDWW 327
T+E+GLQ+T++WY N +WW
Sbjct: 322 TFEQGLQETVQWYEKNEEWW 341
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 201/347 (57%), Gaps = 24/347 (6%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
ILITG AGFI S V +I N + +V +DKL Y NL++L+ S + F D+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK----ITGQI 125
+ + I + D +MH AA++HVD S F + NI GT+ LLE + G+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 126 K----RFIHVSTDEVYGETDEDAVVGNH-------EASQLLPTNPYSATKAGAEMLVMAY 174
K RF H+STDEVYG+ V N E + P++PYSA+KA ++ LV A+
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 175 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
R+YGLP I T +N YGP FPEKLIP IL A++GKPLPI+G G +R +LY ED A
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHAR 241
Query: 235 AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLF------SLNPDTQIKFVENRPFND 288
A ++ +G+ G YNIG E++ +DV IC L + + QI +V +RP +D
Sbjct: 242 ALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301
Query: 289 QRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV-SGA 333
+RY +D K+ ++LGW T+E G++KT++WY++N W +V SGA
Sbjct: 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGA 348
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 198/344 (57%), Gaps = 25/344 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
+ ILITG AGFI S + R I N +VV+DKL Y NL +L P S F F K D+
Sbjct: 2 RKILITGGAGFIGSALV-RYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI 60
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-----IT 122
+ + + D +MH AA++HVD S F + NI GT+ LLEA + +T
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 123 GQIK---RFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 177
K RF H+STDEVYG+ + +D E + P++PYSA+KA ++ LV A+ R+
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFT---ETTPYAPSSPYSASKASSDHLVRAWLRT 177
Query: 178 YGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFD 237
YGLP + T +N YGP FPEKLIP IL A+ GK LP++G+G +R +LY ED A A
Sbjct: 178 YGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 238 TILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ---------IKFVENRPFN 287
+ G+VG YNIG ER+ +DV IC+L L P+ I FV +RP +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 288 DQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV 330
D RY +D K+ ++LG + T+E G++KT++WY++N WW V
Sbjct: 298 DLRYAIDASKIARELGCVPQETFESGMRKTVQWYLANESWWKQV 341
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 193/327 (59%), Gaps = 20/327 (6%)
Query: 10 ILITGAAGFIASHVCNRLI-GNYPEY---KIVVLDKLDYCSNLKNLNPSRLSPNFKFIKG 65
+L+TG AGFI SH +L+ G YP+ +++VLD L Y N NL P P +F+ G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQI 125
D+ A L+ L +D I+HFAA++HVD S + FT+ N+ GT LL+ C + +
Sbjct: 63 DIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGV 119
Query: 126 KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
R +HVSTDEVYG D + E+S L P +PY+A+KAG++++ AY R+YGL V T
Sbjct: 120 GRVVHVSTDEVYGSIDSGSWT---ESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 186 RGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEV 245
R N YGP Q PEKLIP F+ + G LP++GDG+NVR +++ +D +L G
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA 236
Query: 246 GHVYNIGTKKE---RRVIDVATDICKLFSLNPD-TQIKFVENRPFNDQRYFLDVQKL-KQ 300
G +Y+IG E R + + D SL D + ++ V +R +D RY LD K+ ++
Sbjct: 237 GEIYHIGGGLELTNRELTGILLD-----SLGADWSSVRKVADRKGHDLRYSLDGGKIERE 291
Query: 301 LGWYERVTWEEGLQKTMKWYISNPDWW 327
LG+ +V++ +GL +T++WY N WW
Sbjct: 292 LGYRPQVSFADGLARTVRWYRENRGWW 318
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 193/327 (59%), Gaps = 20/327 (6%)
Query: 10 ILITGAAGFIASHVCNRLI-GNYPEY---KIVVLDKLDYCSNLKNLNPSRLSPNFKFIKG 65
+L+TG AGFI SH +L+ G YP+ +++VLD L Y N NL P P +F+ G
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQI 125
D+ A L+ L +D I+HFAA++HVD S + FT+ N+ GT LL+ C + +
Sbjct: 63 DIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQ-CAVDAGV 119
Query: 126 KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
R +HVST++VYG D + E+S L P +PY+A+KAG++++ AY R+YGL V T
Sbjct: 120 GRVVHVSTNQVYGSIDSGSWT---ESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 186 RGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEV 245
R N YGP Q PEKLIP F+ + G LP++GDG+NVR +++ +D +L G
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA 236
Query: 246 GHVYNIGTKKE---RRVIDVATDICKLFSLNPD-TQIKFVENRPFNDQRYFLDVQKL-KQ 300
G +Y+IG E R + + D SL D + ++ V +R +D RY LD K+ ++
Sbjct: 237 GEIYHIGGGLELTNRELTGILLD-----SLGADWSSVRKVADRKGHDLRYSLDGGKIERE 291
Query: 301 LGWYERVTWEEGLQKTMKWYISNPDWW 327
LG+ +V++ +GL +T++WY N WW
Sbjct: 292 LGYRPQVSFADGLARTVRWYRENRGWW 318
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 184/331 (55%), Gaps = 17/331 (5%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
KNI++TG AGFI S+ + + N+P+ + VLDKL Y N NL + L + + GD+
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLE-AILGDRVELVVGDI 63
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
A A+LV L K D I+H+AA++H DNS + F N GT+ LLEA + R
Sbjct: 64 ADAELVD--KLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--R 119
Query: 128 FIHVSTDEVYGETD-EDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSY 178
F HVSTDEVYG+ + + G+ E + P++PYS+TKA ++++V A+ RS+
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 179 GLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDT 238
G+ + +N YGP Q EK IP+ I + G ++G+G NVR +++ D +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWA 239
Query: 239 ILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKL 298
IL KG +G Y IG E+ +V I + P V +R +D RY +D KL
Sbjct: 240 ILTKGRMGETYLIGADGEKNNKEVLELILEKMG-QPKDAYDHVTDRAGHDLRYAIDASKL 298
Query: 299 K-QLGWYERVT-WEEGLQKTMKWYISNPDWW 327
+ +LGW + T + EGL++T++WY N DWW
Sbjct: 299 RDELGWTPQFTDFSEGLEETIQWYTDNQDWW 329
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 459 IRTNVVGTLTLADVCRENGLLMMNYATGCIF------EYDAKHPEGTGIGFKEEDKPNFT 512
I TN +GT TL + R+ + + +T ++ E H EG G F E N
Sbjct: 99 IHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-P 157
Query: 513 GSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNN--PRNFITKI 556
S YS TKA + ++K + V + V+ IS+ NN P I K
Sbjct: 158 SSPYSSTKAASDLIVKAW--VRSFGVKATISNCSNNYGPYQHIEKF 201
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 158/323 (48%), Gaps = 23/323 (7%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
I++TG AGFI SHV ++L +IVV+D NL + N ++ + +K D+A+
Sbjct: 4 IVVTGGAGFIGSHVVDKL---SESNEIVVID------NLSSGNEEFVNEAARLVKADLAA 54
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
D+ ++ E++ H AA V N E +NN+ T+ LLEA + G + R +
Sbjct: 55 DDIKDYLKGAEEV---WHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIV 110
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 189
ST VYGE V+ E P + Y A+K E L+ +Y ++ + R N
Sbjct: 111 FTSTSTVYGEA---KVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 190 VYGPNQFPEKLIPKFIL-LAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHV 248
V G + +I FI+ L + L I G+G +SY+Y D +A L E ++
Sbjct: 168 VIG-RRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNI 226
Query: 249 YNIGTKKERRVIDVATDICKLFSLNPDTQIKFV-ENRPFNDQ--RYFLDVQKLKQLGWYE 305
+NIG++ + +V +A +C+ L+P + +F +R + L ++KLK+LGW
Sbjct: 227 FNIGSEDQIKVKRIAEIVCEELGLSP--RFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKP 284
Query: 306 RVTWEEGLQKTMKWYISNPDWWG 328
R EE ++ ++ + + D G
Sbjct: 285 RYNSEEAVRMAVRDLVEDLDEEG 307
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 20/318 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 62
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 63 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 113
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 173
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+PL ++G GS R++ Y D+ +++
Sbjct: 174 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNS- 232
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E +++ A I L + ++I+F+ + Q+ D++K K LG
Sbjct: 233 NVSSPVNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 290
Query: 303 WYERVTWEEGLQKTMKWY 320
W V EEGL K + ++
Sbjct: 291 WEPVVPLEEGLNKAIHYF 308
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 148/322 (45%), Gaps = 32/322 (9%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL--SPNFKFIKGD 66
ILITG AGFI H+ L+ + E + VLD L + + P + + D
Sbjct: 9 RILITGGAGFIGGHLARALVASGEE--VTVLDDLRVPPMIPPEGTGKFLEKPVLELEERD 66
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
++ LV+ H A+ V SF ++ N G H LL C G +
Sbjct: 67 LSDVRLVY------------HLASHKSVPRSFKQPLDYLDNVDSGRH-LLALCTSVG-VP 112
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-VITT 185
+ + ST EVYG+ D + E S L P +PY+A+K G EM+ A+ R+ P V
Sbjct: 113 KVVVGSTCEVYGQAD---TLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIV 169
Query: 186 RGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEV 245
R NVYGP + P+ L+P+ + LP+ GDG R + Y DV + + ++ +
Sbjct: 170 RFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANR-PL 228
Query: 246 GHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQ-KLKQLGWY 304
V N G+ + V DV I L + +P ++ + RP + D + +Q+G
Sbjct: 229 PSVVNFGSGQSLSVNDV---IRILQATSPAAEVARKQPRPNEITEFRADTALQTRQIG-- 283
Query: 305 ER---VTWEEGLQKTMKWYISN 323
ER + EEG++ T++W+ S
Sbjct: 284 ERSGGIGIEEGIRLTLEWWQSR 305
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 146/320 (45%), Gaps = 22/320 (6%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+L+TG AGFI SH+ L+ E + VLD L + K N + P F+ D+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLE--VAVLDNL---ATGKRENVPKGVPFFRV---DLR 53
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRF 128
+ V + + H AAQ V S + + N+ G LLEAC+ G K
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113
Query: 129 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 188
+ +YGE E E P +PY+A+KA E + YG+SYGL ++ R
Sbjct: 114 FASTGGAIYGEVPEGERA--EETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYG 171
Query: 189 NVYGPNQFPE---KLIPKFILLAMKGKPLPIH-----GDGSNVRSYLYCEDVAEAFDTIL 240
NVYGP Q P ++ F +KG P+ ++ GD VR Y+Y DVAEA L
Sbjct: 172 NVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALAL 231
Query: 241 HKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQ 300
E +YN+GT + +V + + P+ Q RP + +R L KL
Sbjct: 232 FSLE--GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQP--APPRPGDLERSVLSPLKLMA 287
Query: 301 LGWYERVTWEEGLQKTMKWY 320
GW +V ++EG++ T+ +
Sbjct: 288 HGWRPKVGFQEGIRLTVDHF 307
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 20/331 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L + +++ V+D + +N+ NF+ I DV
Sbjct: 28 KRILITGGAGFVGSHLTDKLXXD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 84
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT L K G R
Sbjct: 85 VEP-------LYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVG--AR 135
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE AY + G+ V
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVA 195
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+PL ++G GS R++ Y D+ L
Sbjct: 196 RIFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL-VALXNS 254
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E +++ A I L + ++I+F+ + Q+ D++K K LG
Sbjct: 255 NVSSPVNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDPQKRKPDIKKAKLXLG 312
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGA 333
W V EEGL K + ++ ++ + G+
Sbjct: 313 WEPVVPLEEGLNKAIHYFRKELEYQANNQGS 343
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 152/334 (45%), Gaps = 29/334 (8%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLN-PSRLSPNFKFIKGDV 67
N+++ G AGF+ S++ RL+ E + + +D + + +N P P +F + +
Sbjct: 34 NVMVVGGAGFVGSNLVKRLL----ELGVNQVHVVDNLLSAEKINVPDH--PAVRFSETSI 87
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L+ L ++ D + H A +S + +NN T L E K ++K+
Sbjct: 88 TDDALL--ASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK 145
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTN---PYSATKAGAEMLVMAYGRSYGLPVIT 184
++ + E D E + N PYS +K E + Y + + LP +
Sbjct: 146 VVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVR 205
Query: 185 TRGNNVYGPNQFP-------------EKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCED 231
R NVYGP + + P FI A+KG PLP+ G R +++ ED
Sbjct: 206 ARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVED 265
Query: 232 VAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFND--Q 289
VA G G VYNI + KE + D+AT I ++ N T++ + RP+++ +
Sbjct: 266 VANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNN--TELDRLPKRPWDNSGK 323
Query: 290 RYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISN 323
R+ + ++LG+ V+ ++GL+KT++W +N
Sbjct: 324 RFGSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI ST VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 150/318 (47%), Gaps = 23/318 (7%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVASA 70
LITG AGF+ ++ N L ++ +N N ++L PN + I D+ +
Sbjct: 16 LITGVAGFVGKYLANHLTEQ----------NVEVFGTSRN-NEAKL-PNVEMISLDIMDS 63
Query: 71 DLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFIH 130
V ++ K D I H AA++ V +S+ N N++GT +L+A + + R +
Sbjct: 64 QRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT 123
Query: 131 VSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 188
+ + E YG +E V E +QL P +PY +KA ML Y ++YG+ +I TR
Sbjct: 124 IGSSEEYGMILPEESPV---SEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 189 NVYGPNQ----FPEKLIPKFILLAM-KGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
N GP Q + + + + M K +P+ G+ VR + D+ +A+ + G
Sbjct: 181 NHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG 240
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
+ G VYN+ + R+ DV + + ++ DT++ ++ RP ++LK G
Sbjct: 241 KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTG 300
Query: 303 WYERVTWEEGLQKTMKWY 320
W R+ E+ L + ++ Y
Sbjct: 301 WKPRIPLEKSLFEILQSY 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 385 LKFLIYGRTGWIGGLLSKICEKKGIPFEYGKGR-----LENRSQLLADI----------Q 429
++ LI G G++G L+ ++ + +G R L N + DI
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEV-FGTSRNNEAKLPNVEMISLDIMDSQRVKKVIS 71
Query: 430 NVKPTHVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIF 489
++KP ++F+ A + +V +K T TNV GTL + D R++ L G
Sbjct: 72 DIKPDYIFHLAA---KSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE 128
Query: 490 EYDAKHPEGTGIGFKEEDKPNFTGSFYSKTKAMVEELLKEY 530
EY PE + + + + +P S Y +KA V L ++Y
Sbjct: 129 EYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQY 166
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 148/322 (45%), Gaps = 31/322 (9%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
I++TG AGFI SH+ ++L+ Y++VV+D L + +NPS + + +K
Sbjct: 2 RIVVTGGAGFIGSHLVDKLV--ELGYEVVVVDNLS-SGRREFVNPS-AELHVRDLKDYSW 57
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRF 128
A + K D + HFAA V S N+ T +LE + TG ++
Sbjct: 58 GAGI--------KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTV 108
Query: 129 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 188
+ S+ VYG+ D V+ E P + Y A KA E++ Y R +G+ + R
Sbjct: 109 VFASSSTVYGDAD---VIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 165
Query: 189 NVYGPNQFPEKLIPKFIL-LAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
NV GP + +I FI+ L L + GDG+ +SYLY D EA K E
Sbjct: 166 NVVGP-RLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMD 224
Query: 248 ----VYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPF-----NDQRYF-LDVQK 297
N+G RV+D+A + ++ L P +I+ V + P D +Y L V K
Sbjct: 225 APFLALNVGNVDAVRVLDIAQIVAEVLGLRP--EIRLVPSTPDGRGWPGDVKYMTLAVTK 282
Query: 298 LKQL-GWYERVTWEEGLQKTMK 318
L +L GW +T E ++KT +
Sbjct: 283 LMKLTGWRPTMTSAEAVKKTAE 304
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S+ VYG+ + V + P +P+ +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGT--PQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S VYG+ + V + P +P+ +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESFPTGT--PQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S VYG+ + V + P +P+ +K E ++ +A
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESFPTGT--PQSPFGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ + D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPACWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 147/326 (45%), Gaps = 43/326 (13%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKF---IKG 65
I++TG AGFI SH+ ++L+ Y++VV+D + + R ++ + IKG
Sbjct: 2 RIVVTGGAGFIGSHLVDKLV--ELGYEVVVVDIVQRDTGGSAELHVRDLKDYSWGAGIKG 59
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQI 125
DV + HFAA V S N+ T +LE + TG +
Sbjct: 60 DV-----------------VFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-V 101
Query: 126 KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ + S+ VYG+ D V+ E P + Y A KA E++ Y R +G+ +
Sbjct: 102 RTVVFASSSTVYGDAD---VIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAV 158
Query: 186 RGNNVYGPNQFPEKLIPKFILLAMKGKP--LPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R NV GP + +I FI + ++ P L + GDG+ +SYLY D EA K
Sbjct: 159 RYANVVGP-RLRHGVIYDFI-MKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKF 216
Query: 244 EVGH----VYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPF-----NDQRYF-L 293
E N+G RV+D+A + ++ L P +I+ V + P D +Y L
Sbjct: 217 EEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRP--EIRLVPSTPDGRGWPGDVKYMTL 274
Query: 294 DVQKLKQL-GWYERVTWEEGLQKTMK 318
V KL +L GW +T E ++KT +
Sbjct: 275 AVTKLMKLTGWRPTMTSAEAVKKTAE 300
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 153/335 (45%), Gaps = 28/335 (8%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
+LITG GF+ S++ + + + ++V D L NL+ NF+F+ GD+ +
Sbjct: 4 LLITGGCGFLGSNLASFALSQGID--LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
+ V ++ D+ H A Q + S N + N+ GT LLEA + I
Sbjct: 62 KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 130 HVSTDEVYGETDE-------------DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 176
+ ST++VYG+ ++ D G E++QL +PY +K A+ ++ Y R
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 177 SYGLPVITTRGNNVYGPNQFP---EKLIPKFILLAMK-----GKPLPIHGDGSNVRSYLY 228
+GL + R +++YG QF + + F A++ KP I G+G VR L+
Sbjct: 182 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 241
Query: 229 CEDVAEAFDTILHKGE--VGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPF 286
ED+ + T L G+ +NIG + + N D + + R
Sbjct: 242 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVRE- 300
Query: 287 NDQRYFL-DVQKLKQ-LGWYERVTWEEGLQKTMKW 319
+DQR F+ D++K+ + W +V+ ++G+QK W
Sbjct: 301 SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDW 335
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 150/340 (44%), Gaps = 35/340 (10%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+ILI G AG+I SH +L+ +VV+D NL+ + ++ KF GD+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDE--GLSVVVVD------NLQTGHEDAITEGAKFYNGDLR 54
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRF 128
+ + E I+ +MHFAA + V S ++ NN+YG LLE ++ +F
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMD-EFKVDKF 113
Query: 129 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP------- 181
I ST YGE D D + E + PTN Y TK E ++ Y ++ L
Sbjct: 114 IFSSTAATYGEVDVDLIT---EETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
Query: 182 -VITTRGNNVYGPNQFPE-KLIPKFILLAM-KGKPLPIHG------DGSNVRSYLYCED- 231
V N + G + PE LIP + +A+ + + + + G DG+ +R Y++ ED
Sbjct: 171 NVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 232 VAEAFDTI--LHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQ 289
VA F + L G YN+G V ++ + ++ N + + R +
Sbjct: 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREV--TNHEIPAEVAPRRAGDPA 288
Query: 290 RYFLDVQKLKQ-LGWYER-VTWEEGLQKTMKWYISNPDWW 327
R QK K+ LGW R V + ++ W+ P+ +
Sbjct: 289 RLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGY 328
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 35/339 (10%)
Query: 4 VYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDY-----CSNLKNLNPSRLSP 58
+++PK LITG AGFI S++ +L+ ++ LD +K L +
Sbjct: 35 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWS 92
Query: 59 NFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA 118
F FI+GD+ DL + + +D ++H AA V S + NI G +L A
Sbjct: 93 RFCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHA 150
Query: 119 CKITGQIKRFIHVSTDEVYGETDEDAV------VGNHEASQLLPTNPYSATKAGAEMLVM 172
K Q++ F + ++ YG D A+ +GN P +PY+ TK E+
Sbjct: 151 AK-NAQVQSFTYAASSSTYG--DHPALPKVEENIGN-------PLSPYAVTKYVNEIYAQ 200
Query: 173 AYGRSYGLPVITTRGNNVYGPNQFP----EKLIPKFILLAMKGKPLPIHGDGSNVRSYLY 228
Y R+YG I R NV+G Q P +IPK+ +KG + I+GDG R + Y
Sbjct: 201 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCY 260
Query: 229 CEDVAEA--FDTILHKGEVGHVYNIGTKKERRVIDVAT---DICKLFSLNPDTQIKFVEN 283
++V + + ++YN+ + +++ D L IK+ E
Sbjct: 261 IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 320
Query: 284 RPFNDQRYFLDVQK-LKQLGWYERVTWEEGLQKTMKWYI 321
R + + DV K + L + + EGL+ +M WY+
Sbjct: 321 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYV 359
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 35/339 (10%)
Query: 4 VYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDY-----CSNLKNLNPSRLSP 58
+++PK LITG AGFI S++ +L+ ++ LD +K L +
Sbjct: 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWS 79
Query: 59 NFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA 118
F FI+GD+ DL + + +D ++H AA V S + NI G +L A
Sbjct: 80 RFCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHA 137
Query: 119 CKITGQIKRFIHVSTDEVYGE------TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVM 172
K Q++ F + ++ YG+ +E+ +GN P +PY+ TK E+
Sbjct: 138 AK-NAQVQSFTYAASSSTYGDHPALPKVEEN--IGN-------PLSPYAVTKYVNEIYAQ 187
Query: 173 AYGRSYGLPVITTRGNNVYGPNQFP----EKLIPKFILLAMKGKPLPIHGDGSNVRSYLY 228
Y R+YG I R NV+G Q P +IPK+ +KG + I+GDG R + Y
Sbjct: 188 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCY 247
Query: 229 CEDVAEA--FDTILHKGEVGHVYNIGTKKERRVIDVA---TDICKLFSLNPDTQIKFVEN 283
++V + + ++YN+ + +++ D L IK+ E
Sbjct: 248 IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 284 RPFNDQRYFLDVQK-LKQLGWYERVTWEEGLQKTMKWYI 321
R + + DV K + L + + EGL+ +M WY+
Sbjct: 308 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYV 346
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 35/339 (10%)
Query: 4 VYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDY-----CSNLKNLNPSRLSP 58
+++PK LITG AGFI S++ +L+ ++ LD +K L +
Sbjct: 16 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWS 73
Query: 59 NFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA 118
F FI+GD+ DL + + +D ++H AA V S + NI G +L A
Sbjct: 74 RFCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHA 131
Query: 119 CKITGQIKRFIHVSTDEVYGE------TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVM 172
K Q++ F + ++ YG+ +E+ +GN P +PY+ TK E+
Sbjct: 132 AK-NAQVQSFTYAASSSTYGDHPALPKVEEN--IGN-------PLSPYAVTKYVNEIYAQ 181
Query: 173 AYGRSYGLPVITTRGNNVYGPNQFP----EKLIPKFILLAMKGKPLPIHGDGSNVRSYLY 228
Y R+YG I R NV+G Q P +IPK+ +KG + I+GDG R + Y
Sbjct: 182 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCY 241
Query: 229 CEDVAEA--FDTILHKGEVGHVYNIGTKKERRVIDVA---TDICKLFSLNPDTQIKFVEN 283
++V + + ++YN+ + +++ D L IK+ E
Sbjct: 242 IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 301
Query: 284 RPFNDQRYFLDVQK-LKQLGWYERVTWEEGLQKTMKWYI 321
R + + DV K + L + + EGL+ +M WY+
Sbjct: 302 RSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYV 340
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 35/339 (10%)
Query: 4 VYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDY-----CSNLKNLNPSRLSP 58
+++PK LITG AGFI S++ +L+ ++ LD +K L +
Sbjct: 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWS 79
Query: 59 NFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA 118
F FI+GD+ DL + + +D ++H AA V S + NI G +L A
Sbjct: 80 RFCFIEGDIR--DLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHA 137
Query: 119 CKITGQIKRFIHVSTDEVYGE------TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVM 172
K Q++ F + ++ YG+ +E+ +GN P +PY+ TK E+
Sbjct: 138 AK-NAQVQSFTYAASSSTYGDHPALPKVEEN--IGN-------PLSPYAVTKYVNEIYAQ 187
Query: 173 AYGRSYGLPVITTRGNNVYGPNQFP----EKLIPKFILLAMKGKPLPIHGDGSNVRSYLY 228
Y R+YG I R NV+G Q P +IPK+ +KG + I+GDG R + Y
Sbjct: 188 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCY 247
Query: 229 CEDVAEA--FDTILHKGEVGHVYNIGTKKERRVIDVA---TDICKLFSLNPDTQIKFVEN 283
++V + + ++YN+ + +++ D L IK+ E
Sbjct: 248 IDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREF 307
Query: 284 RPFNDQRYFLDVQK-LKQLGWYERVTWEEGLQKTMKWYI 321
R + + DV K + L + + EGL+ +M WY+
Sbjct: 308 RSGDVRASQADVTKAIDLLKYRPNIKIREGLRLSMPWYV 346
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 129/267 (48%), Gaps = 21/267 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLS--PNFKFIKG 65
+ ILITG AGF+ S++ N+P+ K+VVLDK + N PS L N KG
Sbjct: 11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG 70
Query: 66 DVASADLVHFILL--TEKI--DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKI 121
+V +AD+ + + L EK+ D + H AA + D + N K N LLE +
Sbjct: 71 EVIAADINNPLDLRRLEKLHFDYLFHQAAVS--DTTMLNQELVMKTNYQAFLNLLEIAR- 127
Query: 122 TGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
+ + I+ S+ VYG T VVG +E+ P N Y +K + V+++
Sbjct: 128 -SKKAKVIYASSAGVYGNTKAPNVVGKNES----PENVYGFSKLCMDEFVLSHSNDN--V 180
Query: 182 VITTRGNNVYGPNQFPEK----LIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFD 237
+ R NVYGP +F ++ ++ + L AM K + + G +R ++Y EDV +A +
Sbjct: 181 QVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQA-N 239
Query: 238 TILHKGEVGHVYNIGTKKERRVIDVAT 264
K + VYN+G + R ++ +
Sbjct: 240 VKAMKAQKSGVYNVGYSQARSYNEIVS 266
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 144/330 (43%), Gaps = 23/330 (6%)
Query: 7 PKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL--DYCSNL---KNLNPSRLSPNFK 61
PK LITG AGFI S++ L+ + K+V LD + NL ++L + NFK
Sbjct: 27 PKVWLITGVAGFIGSNLLETLLK--LDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 84
Query: 62 FIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKI 121
FI+GD+ + D + +D ++H AA V S + NI G +L A +
Sbjct: 85 FIQGDIRNLDDCNNA--CAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAAR- 141
Query: 122 TGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
+++ F + ++ YG+ V E + P +PY+ TK E+ + R YG
Sbjct: 142 DAKVQSFTYAASSSTYGDHPGLPKV---EDTIGKPLSPYAVTKYVNELYADVFSRCYGFS 198
Query: 182 VITTRGNNVYGPNQFP----EKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFD 237
I R NV+G Q P +IPK+ ++G + I+GDG R + Y E+ +A
Sbjct: 199 TIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANL 258
Query: 238 TILHKG--EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPF--NDQRYFL 293
G VYNI + + + + N + + R F D R+ L
Sbjct: 259 LAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSL 318
Query: 294 -DVQK-LKQLGWYERVTWEEGLQKTMKWYI 321
D+ K K LG+ + G+ M WYI
Sbjct: 319 ADISKAAKLLGYAPKYDVSAGVALAMPWYI 348
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 128/283 (45%), Gaps = 42/283 (14%)
Query: 73 VHFILLTEKIDTIMHFAAQTH---VDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
VH +E+ID + AA+ +N++ F + +N + ++++ A + + + +
Sbjct: 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIY-QNMMIESNIIHAAHQ--NDVNKLL 103
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLL-----PTN-PYSATKAGAEMLVMAYGRSYGLPVI 183
+ + +Y + + + S+LL PTN PY+ K L +Y R YG
Sbjct: 104 FLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYR 159
Query: 184 TTRGNNVYGP--NQFPE--KLIPKFI-----LLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
+ N+YGP N P +IP + A K + + G G+ +R +L+ +D+A
Sbjct: 160 SVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAA 219
Query: 235 AFDTILHKGEVGHVY------------NIGTKKERRVIDVATDICKLFSLNPDTQIKFVE 282
A +H E+ H N+GT + + ++A I K+ ++ F
Sbjct: 220 AS---IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK--GRVVFDA 274
Query: 283 NRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPD 325
++P R LDV +L QLGWY ++ E GL T +W++ N D
Sbjct: 275 SKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQD 317
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 127/283 (44%), Gaps = 42/283 (14%)
Query: 73 VHFILLTEKIDTIMHFAAQTH---VDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
VH +E+ID + AA+ +N++ F + +N + ++++ A + + + +
Sbjct: 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIY-QNMMIESNIIHAAHQ--NDVNKLL 103
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLL-----PTN-PYSATKAGAEMLVMAYGRSYGLPVI 183
+ + +Y + + + S+LL PTN PY+ K L +Y R YG
Sbjct: 104 FLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYR 159
Query: 184 TTRGNNVYGP--NQFPE--KLIPKFI-----LLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
+ N+YGP N P +IP + A + + G G+ +R +L+ +D+A
Sbjct: 160 SVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAA 219
Query: 235 AFDTILHKGEVGHVY------------NIGTKKERRVIDVATDICKLFSLNPDTQIKFVE 282
A +H E+ H N+GT + + D+A I K+ ++ F
Sbjct: 220 AS---IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVVGYK--GRVVFDA 274
Query: 283 NRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPD 325
++P R LDV +L QLGWY ++ E GL T +W++ N D
Sbjct: 275 SKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQD 317
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 146/351 (41%), Gaps = 40/351 (11%)
Query: 6 TPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLS----PNFK 61
T K +L+TG AG+I SH LI N Y VV D L SN + +RL +
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIEN--GYDCVVADNL---SNSTYDSVARLEVLTKHHIP 64
Query: 62 FIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKI 121
F + D+ + + KID+++HFA V S + NNI GT VLLE +
Sbjct: 65 FYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQ- 123
Query: 122 TGQIKRFIHVSTDEVYGE-TDEDAVVGNHEASQLLPTNPYSATKAGAEM----LVMAYGR 176
+ +F+ S+ VYG+ T ++ E L PTNPY TK E L + +
Sbjct: 124 QYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKK 183
Query: 177 SYGLPV------ITTRGNNVYG--PNQFPEKLIPKFILLAM-KGKPLPIHG------DGS 221
S+ + I + + G P P L+P +A+ + + L I G DG+
Sbjct: 184 SWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 243
Query: 222 NVRSYLYCEDVAEAFDTILHKGE-------VGHVYNIGTKKERRVIDVATDICKLFSLNP 274
+R Y++ D+A+ L E + +N+G+ K V +V CK +
Sbjct: 244 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGI-- 301
Query: 275 DTQIKFVENRPFNDQRYFLDVQKLK-QLGWYERVTWEEGLQKTMKWYISNP 324
D K R + + K +L W + E+ + KW NP
Sbjct: 302 DLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENP 352
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 127/283 (44%), Gaps = 42/283 (14%)
Query: 73 VHFILLTEKIDTIMHFAAQTH---VDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
VH +E+ID + AA+ +N++ F + +N + ++++ A + + + +
Sbjct: 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIY-QNMMIESNIIHAAHQ--NDVNKLL 103
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLL-----PTN-PYSATKAGAEMLVMAYGRSYGLPVI 183
+ + +Y + + + S+LL PTN PY+ K L +Y R YG
Sbjct: 104 FLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYR 159
Query: 184 TTRGNNVYGP--NQFPE--KLIPKFI-----LLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
+ N+YGP N P +IP + A + + G G+ +R +L+ +D+A
Sbjct: 160 SVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAA 219
Query: 235 AFDTILHKGEVGHVY------------NIGTKKERRVIDVATDICKLFSLNPDTQIKFVE 282
A +H E+ H N+GT + + ++A I K+ ++ F
Sbjct: 220 AS---IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK--GRVVFDA 274
Query: 283 NRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPD 325
++P R LDV +L QLGWY ++ E GL T +W++ N D
Sbjct: 275 SKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQD 317
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 27/194 (13%)
Query: 154 LLPTN-PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPE--KLIPKFI--- 205
L PTN PY+ K L +Y R YG + N+YGP N P +IP +
Sbjct: 129 LEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRF 188
Query: 206 --LLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVY------------NI 251
A + + G G+ +R +L+ +D+A A +H E+ H N+
Sbjct: 189 HEATAQSAPDVVVWGSGTPMREFLHVDDMAAAS---IHVMELAHEVWLENTQPMLSHINV 245
Query: 252 GTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEE 311
GT + + ++A I K+ ++ F ++P R LDV +L QLGWY ++ E
Sbjct: 246 GTGVDCTIRELAQTIAKVVGYK--GRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEA 303
Query: 312 GLQKTMKWYISNPD 325
GL T +W++ N D
Sbjct: 304 GLASTYQWFLENQD 317
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 42/283 (14%)
Query: 73 VHFILLTEKIDTIMHFAAQTH---VDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
VH +E+ID + AA+ +N++ F + +N + ++++ A + + + +
Sbjct: 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIY-QNMMIESNIIHAAHQ--NDVNKLL 103
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLL-----PTN-PYSATKAGAEMLVMAYGRSYGLPVI 183
+ + +Y + + + S+LL PTN PY+ + L +Y R YG
Sbjct: 104 FLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPYAIARIAGIKLCESYNRQYGRDYR 159
Query: 184 TTRGNNVYGP--NQFPE--KLIPKFI-----LLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
+ N+YGP N P +IP + A + + G G+ +R +L+ +D+A
Sbjct: 160 SVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAA 219
Query: 235 AFDTILHKGEVGHVY------------NIGTKKERRVIDVATDICKLFSLNPDTQIKFVE 282
A +H E+ H N+GT + + ++A I K+ ++ F
Sbjct: 220 AS---IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK--GRVVFDA 274
Query: 283 NRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPD 325
++P R LDV +L QLGWY ++ E GL T +W++ N D
Sbjct: 275 SKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQD 317
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 42/283 (14%)
Query: 73 VHFILLTEKIDTIMHFAAQTH---VDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
VH +E+ID + AA+ +N++ F + +N + ++++ A + + + +
Sbjct: 47 VHDFFASERIDQVYLAAAKVGGIVANNTYPADFIY-QNMMIESNIIHAAHQ--NDVNKLL 103
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLL-----PTN-PYSATKAGAEMLVMAYGRSYGLPVI 183
+ + +Y + + + S+LL PTN P + K L +Y R YG
Sbjct: 104 FLGSSCIYPKLAKQPMA----ESELLQGTLEPTNEPEAIAKIAGIKLCESYNRQYGRDYR 159
Query: 184 TTRGNNVYGP--NQFPE--KLIPKFI-----LLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
+ N+YGP N P +IP + A + + G G+ +R +L+ +D+A
Sbjct: 160 SVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQSAPDVVVWGSGTPMREFLHVDDMAA 219
Query: 235 AFDTILHKGEVGHVY------------NIGTKKERRVIDVATDICKLFSLNPDTQIKFVE 282
A +H E+ H N+GT + + ++A I K+ ++ F
Sbjct: 220 AS---IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK--GRVVFDA 274
Query: 283 NRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPD 325
++P R LDV +L QLGWY ++ E GL T +W++ N D
Sbjct: 275 SKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQD 317
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 141/335 (42%), Gaps = 27/335 (8%)
Query: 5 YTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIK 64
+ K + +TG GF S + L K LD S + + RL+ +
Sbjct: 7 WQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIV---RLNDLMESHI 63
Query: 65 GDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQ 124
GD+ + + + K + + H AAQ V S+ + N+ GT LLE K G
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGN 123
Query: 125 IKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY------ 178
IK +++++D+ Y + + V G E + +PYS +K AE++ A+ S+
Sbjct: 124 IKAVVNITSDKCY--DNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPANY 181
Query: 179 ---GLPVITTRGNNVYGPNQFP-EKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
G+ + + R NV G + ++LIP IL + + I + ++R + + +
Sbjct: 182 EQHGVGLASVRAGNVIGGGDWAKDRLIPD-ILRSFENNQQVIIRNPYSIRPWQHVLEPLS 240
Query: 235 AFDTILHK-----GEVGHVYNIGTKKE-RRVIDVATDICKLFSLNPDTQIKFV--ENRPF 286
+ + + + +N G + E + ++ D K+ +L D + EN P
Sbjct: 241 GYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIVD--KMVTLWGDDASWLLDGENHPH 298
Query: 287 NDQRYFLDVQKLK-QLGWYERVTWEEGLQKTMKWY 320
LD K QLGW+ R E L + +KW+
Sbjct: 299 EAHYLKLDCSKANMQLGWHPRWGLTETLSRIVKWH 333
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 126/296 (42%), Gaps = 31/296 (10%)
Query: 10 ILITGAAGFIASHVCNRLI--GNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
I +TG GF+ +V + GN P I++ + ++ ++++ D
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTP---IILTRSI----------GNKAINDYEYRVSDY 51
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
DL++ + +D ++H AA S G EF N I T L +AC I
Sbjct: 52 TLEDLINQL---NDVDAVVHLAATR---GSQGKISEFHDNEIL-TQNLYDAC-YENNISN 103
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
++ ST Y +DE ++ N E LP Y +K E + Y R GL + R
Sbjct: 104 IVYASTISAY--SDETSLPWN-EKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRF 160
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
++YG N+ I +F A G+ L +H + R +LY +D A++ L + +V
Sbjct: 161 AHLYGFNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSG 220
Query: 248 VYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFND--QRYFLDVQKLKQL 301
+NIG+ +VA I F N D + V+N N+ + D K K+L
Sbjct: 221 TFNIGSGDALTNYEVANTINNAFG-NKDNLL--VKNPNANEGIHSSYXDSSKAKEL 273
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 142/353 (40%), Gaps = 47/353 (13%)
Query: 3 TVYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL------ 56
++ T IL+TG AG+I SH L+ + Y +V+ D L N K +R+
Sbjct: 1 SMSTKGTILVTGGAGYIGSHTAVELLAH--GYDVVIADNL---VNSKREAIARIEKITGK 55
Query: 57 SPNFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLL 116
+P F + DV+ + I I +HFAA V S E+ +NN+ LL
Sbjct: 56 TPAFH--ETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLL 113
Query: 117 EACKITGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEML---VMA 173
+ +KR + S+ VYG + + E L TNPY TK AE + V A
Sbjct: 114 RVMR-ERAVKRIVFSSSATVYGVPERSPI---DETFPLSATNPYGQTKLMAEQILRDVEA 169
Query: 174 YGRSYGLPVITTRGNNVYG----------PNQFPEKLIPKFILLAM-KGKPLPIHG---- 218
S+ V T R N G P P L+P +A+ K + L + G
Sbjct: 170 ADPSW--RVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYP 227
Query: 219 --DGSNVRSYLYCEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSL 272
DG+ VR Y++ D+A A D L + + N+GT + V++V K +
Sbjct: 228 TPDGTGVRDYIHVVDLARGHIAALDA-LERRDASLTVNLGTGRGYSVLEVVRAFEK--AS 284
Query: 273 NPDTQIKFVENRPFNDQRYFLD-VQKLKQLGWYERVTWEEGLQKTMKWYISNP 324
+ V RP + + + + +GW E +W +NP
Sbjct: 285 GRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNP 337
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 22/256 (8%)
Query: 83 DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFIHVSTDEVYGETDE 142
+ + H AAQ V S+ E N+ GT LLEA + G +K +++++D+ Y ++
Sbjct: 82 EIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCY--DNK 139
Query: 143 DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY---------GLPVITTRGNNVYGP 193
+ + G E + +PYS +K AE++ +Y S+ G V T R NV G
Sbjct: 140 EWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGG 199
Query: 194 NQFP-EKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHK-----GEVGH 247
+ ++++P + + +P+ I + +R + + + + + K E
Sbjct: 200 GDWALDRIVPDILRAFEQSQPVIIRNPHA-IRPWQHVLEPLSGYLLLAQKLYTDGAEYAE 258
Query: 248 VYNIGTKKERR--VIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLGWY 304
+N G V ++ + K + Q+ P LD K K QLGW+
Sbjct: 259 GWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDG-NAHPHEAHYLKLDCSKAKMQLGWH 317
Query: 305 ERVTWEEGLQKTMKWY 320
R L+ + W+
Sbjct: 318 PRWNLNTTLEYIVGWH 333
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 26/115 (22%)
Query: 386 KFLIYGRTGWIGGLLSKICEKKG------------IP--FEYGK---------GRLENRS 422
+ + G TG+ GG LS + G +P FE + G + +++
Sbjct: 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN 70
Query: 423 QLLADIQNVKPTHVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENG 477
+LL I+ +P VF+ A +P V + ET TNV+GT+ L + R G
Sbjct: 71 KLLESIREFQPEIVFHMAA---QPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 122
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 126/319 (39%), Gaps = 67/319 (21%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL-------DYCSNLKNL----------N 52
+L+ G AG+I SH L+ + + +V++D L D+ +N+
Sbjct: 5 VLVCGGAGYIGSHFVRALLRD-TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 53 PSRLSPNFKFIKGDVASADLVHFILLTE-KIDTIMHFAAQTHVDNSFGNSFEFTKNNIYG 111
P GDV + D ++ + ID ++H A V S + ++ NN+ G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 112 THVLLEACKITGQIKRFIHVSTDEVYGETDEDAVVGNHEA----SQLLPTNPYSATKAGA 167
LL+A + + + I S+ ++G +V N E ++ P +PY +K A
Sbjct: 124 ILRLLQA-MLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIA 182
Query: 168 EMLVMAYGRSYGLPVITTRGNNVYGPN---------QFPEKLIPKFILLAMK-------- 210
E ++ +YG+ I R N G + Q LIP + M
Sbjct: 183 ERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRL 242
Query: 211 --------GKPLPIHG------DGSNVRSYLYCEDVAEAFDTIL---------HKGEVGH 247
K +PI G DG+ VR Y++ D+A A L K +
Sbjct: 243 TIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302
Query: 248 VYNIGTKKE---RRVIDVA 263
V+N+GT + R VI+VA
Sbjct: 303 VFNLGTSRGYSVREVIEVA 321
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 142/354 (40%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + + +K D ++ A E+T+N + + E +I
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ +K L W ++ +E + +T+ +++ D
Sbjct: 300 VVESSSYYGKGY-QDVEHMKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 352
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 129/325 (39%), Gaps = 34/325 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
I ITGA GFIASH+ RL + + ++ D +++ F + V
Sbjct: 32 ISITGAGGFIASHIARRL--KHEGHYVIASD----WKKNEHMTEDMFCDEFHLVDLRV-- 83
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKITGQI 125
+ + + +TE +D + + AA G N NN + ++EA +I G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 126 KRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
KRF + S+ +Y E + + + +A P + Y K E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIE 197
Query: 182 VITTRGNNVYGP----NQFPEKLIPKFILLAMKGKP-LPIHGDGSNVRSYLYCEDVAEAF 236
R +N+YGP EK F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLN-PDTQIKFVEN-RPFNDQRYFLD 294
L K + NIG+ + + ++A + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 295 VQKLKQLGWYERVTWEEGLQKTMKW 319
++LGW + +EGL+ T W
Sbjct: 317 ----EKLGWAPNMRLKEGLRITYFW 337
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 435 HVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIFEYDAK 494
HVFN A G + + +++ + N + + + + R NG+ YA+ + K
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 495 HPEGTGIGFKEEDK-PNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNP---- 549
E T + KE D P Y K EEL K Y+ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 550 ------------RNFITKISRYNKVVN--IPNSMTILDELLPISVEMAKRNLSGIWNFTN 595
R T R+ + S T +DE + + + K + N +
Sbjct: 214 KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 596 PGVVSHNEILEMYKAY 611
+VS NE+ EM ++
Sbjct: 274 DEMVSMNEMAEMVLSF 289
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 141/354 (39%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + + +K D ++ A E+T+N + + E +I
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ K L W ++ +E + +T+ +++ D
Sbjct: 300 VVESSSYYGKGY-QDVEHYKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 352
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 34/325 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
I ITGA GFIASH+ RL + + ++ D +++ F + V
Sbjct: 32 ISITGAGGFIASHIARRL--KHEGHYVIASD----WKKNEHMTEDMFCDEFHLVDLRV-- 83
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKITGQI 125
+ + + +TE +D + + AA G N NN + ++EA +I G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 126 KRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
KRF + S+ +Y E + + + +A P + Y + E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIE 197
Query: 182 VITTRGNNVYGP----NQFPEKLIPKFILLAMKGKP-LPIHGDGSNVRSYLYCEDVAEAF 236
R +N+YGP EK F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLN-PDTQIKFVEN-RPFNDQRYFLD 294
L K + NIG+ + + ++A + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 295 VQKLKQLGWYERVTWEEGLQKTMKW 319
++LGW + +EGL+ T W
Sbjct: 317 ----EKLGWAPNMRLKEGLRITYFW 337
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 435 HVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIFEYDAK 494
HVFN A G + + +++ + N + + + + R NG+ YA+ + K
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 495 HPEGTGIGFKEEDK-PNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNP---- 549
E T + KE D P Y + EEL K Y+ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 550 ------------RNFITKISRYNKVVN--IPNSMTILDELLPISVEMAKRNLSGIWNFTN 595
R T R+ + S T +DE + + + K + N +
Sbjct: 214 KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 596 PGVVSHNEILEMYKAY 611
+VS NE+ EM ++
Sbjct: 274 DEMVSMNEMAEMVLSF 289
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 141/354 (39%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + + +K D ++ A E+T+N + + E +I
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ K L W ++ +E + +T+ +++ D
Sbjct: 300 VVESSSYYGKGY-QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 352
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 140/354 (39%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 3 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 55
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + +K D ++ A E+T+N + + E +I
Sbjct: 56 IHSEWIEY--HVKKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 106
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 107 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 166
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 167 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 226
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 227 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 286
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ K L W ++ +E + +T+ +++ D
Sbjct: 287 VVESSSYYGKGY-QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLN-----PSRLSPNFKF 62
K LITG G S++ L+ Y++ + + N + ++ P +P F
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL 59
Query: 63 IKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEACKI 121
GD++ + IL + D + + A +HV SF S E+T + + GT LLEA +
Sbjct: 60 HYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSF-ESPEYTADVDAMGTLRLLEAIRF 118
Query: 122 TGQIK--RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 179
G K RF ST E+YG E + E + P +PY+ K A + + Y SYG
Sbjct: 119 LGLEKKTRFYQASTSELYGLVQE---IPQKETTPFYPRSPYAVAKLYAYWITVNYRESYG 175
Query: 180 L 180
+
Sbjct: 176 M 176
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 141/354 (39%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + + +K D ++ A E+T+N + + E +I
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ K L W ++ +E + +T+ +++ D
Sbjct: 300 VVESSSYYGKGY-QDVEHEKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 352
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 141/354 (39%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 16 VLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 68
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + + +K D ++ A E+T+N + + E +I
Sbjct: 69 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 119
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 120 KYRKRIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 179
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 180 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 239
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 240 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 299
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ K L W ++ +E + +T+ +++ D
Sbjct: 300 VVESSSYYGKGY-QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 352
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 34/325 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
I ITGA GFIASH+ RL + + ++ D +++ F + V
Sbjct: 32 ISITGAGGFIASHIARRL--KHEGHYVIASD----WKKNEHMTEDMFCDEFHLVDLRV-- 83
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKITGQI 125
+ + + +TE +D + + AA G N NN + ++EA +I G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 126 KRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
KRF + S+ +Y E + + + +A P + + K E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIE 197
Query: 182 VITTRGNNVYGP----NQFPEKLIPKFILLAMKGKP-LPIHGDGSNVRSYLYCEDVAEAF 236
R +N+YGP EK F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLN-PDTQIKFVEN-RPFNDQRYFLD 294
L K + NIG+ + + ++A + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 295 VQKLKQLGWYERVTWEEGLQKTMKW 319
++LGW + +EGL+ T W
Sbjct: 317 ----EKLGWAPNMRLKEGLRITYFW 337
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 435 HVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIFEYDAK 494
HVFN A G + + +++ + N + + + + R NG+ YA+ + K
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 495 HPEGTGIGFKEEDK-PNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNP---- 549
E T + KE D P + K EEL K Y+ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 550 ------------RNFITKISRYNKVVN--IPNSMTILDELLPISVEMAKRNLSGIWNFTN 595
R T R+ + S T +DE + + + K + N +
Sbjct: 214 KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 596 PGVVSHNEILEMYKAY 611
+VS NE+ EM ++
Sbjct: 274 DEMVSMNEMAEMVLSF 289
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 141/354 (39%), Gaps = 55/354 (15%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLD-KLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
+LI G GFI +H+ RL+ Y++ LD D S N P+F F++GD++
Sbjct: 318 VLILGVNGFIGNHLTERLL-REDHYEVYGLDIGSDAISRFLN------HPHFHFVEGDIS 370
Query: 69 -SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA-CKITGQI- 125
++ + + + +K D ++ A E+T+N + + E +I
Sbjct: 371 IHSEWIEYHV--KKCDVVLPLVA-------IATPIEYTRNPLRVFELDFEENLRIIRYCV 421
Query: 126 ---KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP----YSATKAGAEMLVMAYGRSY 178
KR I ST EVYG + +H + P N YS +K + ++ AYG
Sbjct: 422 KYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE 481
Query: 179 GLPVITTRGNNVYGPNQ--------FPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCE 230
GL R N GP + I + IL ++G P+ + G R +
Sbjct: 482 GLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIR 541
Query: 231 DVAEAFDTILHKGE---VGHVYNIGT-KKERRVIDVATDICKLFSLNPDTQ-------IK 279
D EA I+ G + NIG + E + ++ + F +P +
Sbjct: 542 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 601
Query: 280 FVENRPFNDQRYFLDVQKLKQ--------LGWYERVTWEEGLQKTMKWYISNPD 325
VE+ + + Y DV+ K L W ++ +E + +T+ +++ D
Sbjct: 602 VVESSSYYGKGY-QDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 34/325 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
I ITGA GFIASH+ RL + + ++ D +++ F + V
Sbjct: 32 ISITGAGGFIASHIARRL--KHEGHYVIASD----WKKNEHMTEDMFCDEFHLVDLRV-- 83
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFG----NSFEFTKNNIYGTHVLLEACKITGQI 125
+ + + +TE +D + + AA G N NN + ++EA +I G I
Sbjct: 84 --MENCLKVTEGVDHVFNLAADM---GGMGFIQSNHSVIMYNNTMISFNMIEAARING-I 137
Query: 126 KRFIHVSTDEVYGETDE----DAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
KRF + S+ +Y E + + + +A P + Y K E L Y + +G+
Sbjct: 138 KRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIE 197
Query: 182 VITTRGNNVYGP----NQFPEKLIPKFILLAMKGKP-LPIHGDGSNVRSYLYCEDVAEAF 236
R +N+YGP E F A + GDG RS+ + ++ E
Sbjct: 198 CRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV 257
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLN-PDTQIKFVEN-RPFNDQRYFLD 294
L K + NIG+ + + ++A + P I E R N +
Sbjct: 258 -LRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIK 316
Query: 295 VQKLKQLGWYERVTWEEGLQKTMKW 319
++LGW + +EGL+ T W
Sbjct: 317 ----EKLGWAPNMRLKEGLRITYFW 337
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 435 HVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIFEYDAK 494
HVFN A G + + +++ + N + + + + R NG+ YA+ + K
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 495 HPEGTGIGFKEEDK-PNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNP---- 549
E T + KE D P Y K EEL K Y+ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 550 ------------RNFITKISRYNKVVN--IPNSMTILDELLPISVEMAKRNLSGIWNFTN 595
R T R+ + S T +DE + + + K + N +
Sbjct: 214 KGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 596 PGVVSHNEILEMYKAY 611
+VS NE+ EM ++
Sbjct: 274 DEMVSMNEMAEMVLSF 289
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 134/350 (38%), Gaps = 36/350 (10%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL-------SPNF 60
+ +L+TG AG+I SH L+ Y VV+D P L +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELL--EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 61 KFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 120
+F + D+ + + ++HFA V S ++ + N+ GT LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 121 ITGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR---- 176
G +K + S+ VYG + H TNPY +K E ++ +
Sbjct: 121 AHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGC--TNPYGKSKFFIEEMIRDLCQADKT 177
Query: 177 --SYGLPVITTRGNNVYG-----PNQFPEKLIPKFILLAM-KGKPLPIHG------DGSN 222
+ L G + G P P L+P +A+ + + L + G DG+
Sbjct: 178 WNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 223 VRSYLYCEDVAEAFDTILH--KGEVG-HVYNIGTKKERRVIDVATDICKLFSLNPDTQIK 279
VR Y++ D+A+ L K + G +YN+GT V+ + + K + K
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK--ASGKKIPYK 295
Query: 280 FVENRPFNDQRYFLDVQ-KLKQLGWYERVTWEEGLQKTMKWYISNPDWWG 328
V R + + + ++LGW + + + +W NP +G
Sbjct: 296 VVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 135/350 (38%), Gaps = 36/350 (10%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL-------SPNF 60
+ +L+TG AG+I SH L+ Y VV+D P L +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELL--EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 61 KFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 120
+F + D+ + + ++HFA V S ++ + N+ GT LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 121 ITGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS-YG 179
G +K + S+ VYG + H TNPY +K E ++ ++
Sbjct: 121 AHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGC--TNPYGKSKFFIEEMIRDLCQADKT 177
Query: 180 LPVITTRGNNVYG----------PNQFPEKLIPKFILLAM-KGKPLPIHG------DGSN 222
V+ R N G P P L+P +A+ + + L + G DG+
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 223 VRSYLYCEDVAEAFDTILH--KGEVG-HVYNIGTKKERRVIDVATDICKLFSLNPDTQIK 279
VR Y++ D+A+ L K + G +YN+GT V+ + + K + K
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK--ASGKKIPYK 295
Query: 280 FVENRPFNDQRYFLDVQ-KLKQLGWYERVTWEEGLQKTMKWYISNPDWWG 328
V R + + + ++LGW + + + +W NP +G
Sbjct: 296 VVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 36/350 (10%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL-------SPNF 60
+ +L+TG AG+I SH L+ Y VV+D P L +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELL--EAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 61 KFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 120
+F + D+ + + ++HFA + S ++ + N+ GT LLE K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 121 ITGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS-YG 179
G +K + S+ VYG + H TNPY +K E ++ ++
Sbjct: 121 AHG-VKNLVFSSSATVYGNPQYLPLDEAHPTGGC--TNPYGKSKFFIEEMIRDLCQADKT 177
Query: 180 LPVITTRGNNVYG----------PNQFPEKLIPKFILLAM-KGKPLPIHG------DGSN 222
V+ R N G P P L+P +A+ + + L + G DG+
Sbjct: 178 WNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG 237
Query: 223 VRSYLYCEDVAEAFDTILH--KGEVG-HVYNIGTKKERRVIDVATDICKLFSLNPDTQIK 279
VR Y++ D+A+ L K + G +YN+GT V+ + + K + K
Sbjct: 238 VRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEK--ASGKKIPYK 295
Query: 280 FVENRPFNDQRYFLDVQ-KLKQLGWYERVTWEEGLQKTMKWYISNPDWWG 328
V R + + + ++LGW + + + +W NP +G
Sbjct: 296 VVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 131/321 (40%), Gaps = 35/321 (10%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLS-----PNFKF 62
K + ITG G I SH+ L L++ D + N R PN F
Sbjct: 22 KKVFITGICGQIGSHIAELL-----------LERGDKVVGIDNFATGRREHLKDHPNLTF 70
Query: 63 IKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKIT 122
++G +A LV+ ++ + D ++H AA + + N T N G +++A K
Sbjct: 71 VEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYND---TLTNCVGGSNVVQAAK-K 126
Query: 123 GQIKRFIHVSTDEVYG-ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
+ RF++ T YG + + V +H P NP +++ A ++ Y GL
Sbjct: 127 NNVGRFVYFQTALCYGVKPIQQPVRLDH------PRNPANSSYAISKSANEDYLEYSGLD 180
Query: 182 VITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILH 241
+T R NV GP L P F +GK + R +++ +D+A A T+
Sbjct: 181 FVTFRLANVVGPRNVSGPL-PIFFQRLSEGKKCFVT---KARRDFVFVKDLARA--TVRA 234
Query: 242 KGEVGH-VYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQK-LK 299
VGH Y+ + + + ++ + + +L + + E P + LD + ++
Sbjct: 235 VDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQ 294
Query: 300 QLGWYERVTWEEGLQKTMKWY 320
G E +E + + ++
Sbjct: 295 DFGKIEFTPLKETVAAAVAYF 315
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 26/180 (14%)
Query: 9 NILITGAAGFIASHVCNRLIG-NYPEYKIVVLD--KLDYCSNLKNLNP-------SRLSP 58
N L+TGA GF+ +++ L G ++ Y + D ++ + + NLN +
Sbjct: 152 NTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLS 211
Query: 59 NFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA 118
N + I GD D V +L E +DTI+H A+T + FG+ EF K N+ GT ++
Sbjct: 212 NIEVIVGDFECMDDV---VLPENMDTIIHAGART---DHFGDDDEFEKVNVQGT---VDV 262
Query: 119 CKITGQ-IKRFIHVSTDEV--YGETD-EDAVVGNHEA--SQLLPTNPYSATKAGAEMLVM 172
++ Q R I+VST V Y + D ED + QLL T+PY+ +K +E+ V+
Sbjct: 263 IRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL-TSPYTRSKFYSELKVL 321
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 11/177 (6%)
Query: 11 LITGAAGFIASHVCNRLI-GNYPEYKIVVLDKLDYCSNLKNL--NP-SRLSPNFKFIKGD 66
LITG G S++ L+ Y + IV +++L NP + + N K GD
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 87
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKN-NIYGTHVLLEACKITGQI 125
+ + + I+ K I + AQ+HV SF + E+T + + GT LL+A K G I
Sbjct: 88 LTDSTCLVKIINEVKPTEIYNLGAQSHVKISF-DLAEYTADVDGVGTLRLLDAVKTCGLI 146
Query: 126 K--RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 180
+F ST E+YG+ E + E + P +PY A K A +V+ + +Y L
Sbjct: 147 NSVKFYQASTSELYGKVQE---IPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNL 200
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 53/290 (18%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVL--DKLDYCSNLKNLNPSRLSPNFKFIKG 65
+ ILITG G +++ KI+V D+L N P +F G
Sbjct: 22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIG 77
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQI 125
DV + +++ L E +D +H AA HV + N E K NI G ++ AC + I
Sbjct: 78 DVRDLERLNYAL--EGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINAC-LKNAI 134
Query: 126 KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMA---YGRSYGLPV 182
+ I +STD+ P N Y ATK ++ L ++ + S
Sbjct: 135 SQVIALSTDKAAN-----------------PINLYGATKLCSDKLFVSANNFKGSSQTQF 177
Query: 183 ITTRGNNVYGPNQFPEKLIPKF-ILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTIL- 240
R NV G ++P F L+ K +PI +++R + + E +L
Sbjct: 178 SVVRYGNVVGSRG---SVVPFFKKLVQNKASEIPI----TDIRMTRFWITLDEGVSFVLK 230
Query: 241 -----HKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRP 285
H GE+ V I + K TD+ K +L P+T K + RP
Sbjct: 231 SLKRMHGGEI-FVPKIPSMK-------MTDLAK--ALAPNTPTKIIGIRP 270
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 137/337 (40%), Gaps = 43/337 (12%)
Query: 2 ATVYTPKNI-LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPN- 59
+TV P+ I LITG G S++ L+G Y++ L + N + +N + P+
Sbjct: 22 STVVEPRKIALITGITGQDGSYLTEFLLGK--GYEVHGLIRRSSNFNTQRINHIYIDPHN 79
Query: 60 -----FKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIY-GTH 113
K D+ A + + K D + + AAQ+HV SF ++T + + G
Sbjct: 80 VNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSF-EIPDYTADVVATGAL 138
Query: 114 VLLEACKI----TGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEM 169
LLEA + +G+ ++ + E++G T E + P +PY+A+K A
Sbjct: 139 RLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPP----QSETTPFHPRSPYAASKCAAHW 194
Query: 170 LVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIH-----GDGSNVR 224
+ Y +YGL N P + E + + I A+ + + G+ R
Sbjct: 195 YTVNYREAYGLFACNGILFNHESPRR-GENFVTRKITRALGRIKVGLQTKLFLGNLQASR 253
Query: 225 SYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
+ + D EA +L + E Y + T++ V + LN ++
Sbjct: 254 DWGFAGDYVEAMWLMLQQ-EKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEI---- 308
Query: 285 PFNDQRYFL---------DVQKLKQ-LGWYERVTWEE 311
DQRYF D K K+ LGW +V +E+
Sbjct: 309 ---DQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEK 342
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 9 NILITGAAGFIASHVCNRLIG-NYPEYKIVVLD--KLDYCSNLKNLNP-------SRLSP 58
N L+TGA GF+ +++ L G ++ Y + D ++ + NLN
Sbjct: 71 NTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXLS 130
Query: 59 NFKFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEA 118
N + I GD D V +L E DTI+H A+T + FG+ EF K N+ GT ++
Sbjct: 131 NIEVIVGDFECXDDV---VLPENXDTIIHAGART---DHFGDDDEFEKVNVQGT---VDV 181
Query: 119 CKITGQ-IKRFIHVSTDEV--YGETD-EDAVVGNHEA--SQLLPTNPYSATKAGAEMLVM 172
++ Q R I+VST V Y + D ED + QLL T+PY+ +K +E+ V+
Sbjct: 182 IRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLL-TSPYTRSKFYSELKVL 240
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG++G I + + L Y + ++ D + R + KFI DV++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV-----------QRDTGGIKFITLDVSN 50
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
D + + ID I H A + + K N+ GT+ +LEA K ++++ +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY-KVNMNGTYNILEAAK-QHRVEKVV 108
Query: 130 HVSTDEVYG-ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 186
ST V+G ET ++ V + P Y TK AE+L Y +GL V + R
Sbjct: 109 IPSTIGVFGPETPKNKV---PSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG++G I + + L Y + ++ D + R + KFI DV++
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV-----------QRDTGGIKFITLDVSN 50
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
D + + ID I H A + + K N+ GT+ +LEA K ++++ +
Sbjct: 51 RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY-KVNMNGTYNILEAAK-QHRVEKVV 108
Query: 130 HVSTDEVYG-ETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 186
ST V+G ET ++ V + P + TK AE+L Y +GL V + R
Sbjct: 109 IPSTIGVFGPETPKNKV---PSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLR 163
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 7/174 (4%)
Query: 8 KNILITGAAGFIASHVCNRLI-GNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGD 66
++ L+TG G +++ L+ Y + +V D L+ L + + ++ GD
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG---IEGDIQYEDGD 71
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+A A V ++ + + + AAQ+ V S+ + G LLEA +
Sbjct: 72 MADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPET 131
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 180
RF ST E++G + E + P +PY K + + Y S+GL
Sbjct: 132 RFYQASTSEMFGLIQAER---QDENTPFYPRSPYGVAKLYGHWITVNYRESFGL 182
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K +L+TGAAG + + RL P +I+ L ++L L+P+ PN + ++ D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLA---PMAEILRL------ADLSPLDPA--GPNEECVQCDL 52
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
A A+ V+ + D I+H + V+ F + + NI G + L EA + GQ R
Sbjct: 53 ADANAVN--AMVAGCDGIVHLGGIS-VEKPFE---QILQGNIIGLYNLYEAARAHGQ-PR 105
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR- 186
+ S++ G + +G ++ P Y +K E L Y +G R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPAR--PDGLYGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 187 GNNVYGPNQF 196
G+ PN +
Sbjct: 164 GSCTPEPNNY 173
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 15/178 (8%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL--DYCS-NLKNLNPSRLSPNFKFIK 64
K LITG G +++ L+ Y++ D+ ++ S LK L + + K I
Sbjct: 4 KRALITGIRGQDGAYLAKLLLEK--GYEVYGADRRSGEFASWRLKELG---IENDVKIIH 58
Query: 65 GDVASADLVHFILLTEKI--DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKIT 122
D+ + + I EK+ D + + AAQ+ V SF + + G +LEA +
Sbjct: 59 MDLL--EFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV 116
Query: 123 GQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 180
+F ST E++G+ E + E + P +PY+ K + + Y +Y +
Sbjct: 117 KPDTKFYQASTSEMFGKVQE---IPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNM 171
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 28/257 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGN-YPEYKIVVLD---KLDYCSNLKNLNPSRLSPNFKFIKG 65
+ +TG GF+ S + L+ N Y + D K D S L NL + S F
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD-VSFLTNLPGA--SEKLHFFNA 60
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEF-TKNNIYGTHVLLEACKITGQ 124
D+++ D F E I H A+ +D + E TK + G +L+AC +
Sbjct: 61 DLSNPD--SFAAAIEGCVGIFHTASP--IDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 125 IKRFIHVSTDEVYGETDEDAVVGNH----EASQLLPTNP----YSATKAGAEMLVMAYGR 176
+KRFI+ S+ +D V + + L P Y+ +K AE V+ +G
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGE 176
Query: 177 SYGLPVITTRGNNVYG---PNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVA 233
G+ V+T + G + P+ + +L+ K + + G ++ +DVA
Sbjct: 177 QNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI-----GVTRFHMVHVDDVA 231
Query: 234 EAFDTILHKGEVGHVYN 250
A +L G YN
Sbjct: 232 RAHIYLLENSVPGGRYN 248
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 108 NIYGTHVLLEACKITGQIKRFIHVSTDEVYGETDED--AVVGNHEASQLLPTNPYSATKA 165
N+ GT LL+A G ++RF+ S+ EVY E + V +H L P +PY TK
Sbjct: 102 NVEGTRRLLDAASAAG-VRRFVFASSGEVYPENRPEFLPVTEDHP---LCPNSPYGLTKL 157
Query: 166 GAEMLVMAYGRSYGLPVITTR 186
E LV + RS + + R
Sbjct: 158 LGEELVRFHQRSGAMETVILR 178
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K +L+TGAAG + + RL P +I+ L ++L L+P+ PN + ++ D+
Sbjct: 4 KRLLVTGAAGQLGRVMRERLA---PMAEILRL------ADLSPLDPA--GPNEECVQCDL 52
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
A A+ V+ + D I+H + V+ F + + NI G + L EA + GQ R
Sbjct: 53 ADANAVN--AMVAGCDGIVHLGGIS-VEKPFE---QILQGNIIGLYNLYEAARAHGQ-PR 105
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR- 186
+ S++ G + +G ++ P +K E L Y +G R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPAR--PDGLAGVSKCFGENLARMYFDKFGQETALVRI 163
Query: 187 GNNVYGPNQF 196
G+ PN +
Sbjct: 164 GSCTPEPNNY 173
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
+L+TGA GF+ASHV +L+ E+ V S L NL R + G +
Sbjct: 14 VLVTGANGFVASHVVEQLL----EHGYKVRGTARSASKLANLQ-KRWDAKY---PGRFET 65
Query: 70 ADLVHFILLTEKIDTIMHFAAQ-THVDN--SFGNSF-EFTKNNIYGTHVLLEACKITGQI 125
A +V +L D ++ AA H+ + SF N + E I GT L A T +
Sbjct: 66 A-VVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSV 124
Query: 126 KRFIHVST 133
KRF+ S+
Sbjct: 125 KRFVLTSS 132
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
+L+TGA GF+ASHV +L+ E+ V S L NL R + G +
Sbjct: 14 VLVTGANGFVASHVVEQLL----EHGYKVRGTARSASKLANLQ-KRWDAKY---PGRFET 65
Query: 70 ADLVHFILLTEKIDTIMHFAAQ-THVDN--SFGNSF-EFTKNNIYGTHVLLEACKITGQI 125
A +V L D ++ AA H+ + SF N + E I GT L A T +
Sbjct: 66 A-VVEDXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSV 124
Query: 126 KRFIHVST 133
KRF+ S+
Sbjct: 125 KRFVLTSS 132
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 54/334 (16%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCS---NLKNLNPSRLSPNFKFIKGD 66
I++TG AGFI S++ + + + I+V+D L + NL +LN + F+
Sbjct: 2 IIVTGGAGFIGSNIV-KALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 60
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+A + ++ I H A + G NN + LL C ++
Sbjct: 61 MAGEEF-------GDVEAIFHEGAXSSTTEWDGKY--MMDNNYQYSKELLHYC-----LE 106
Query: 127 R---FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP-- 181
R F++ S+ YG D + + E + P N Y +K L Y R LP
Sbjct: 107 REIPFLYASSAATYGGRTSD-FIESREYEK--PLNVYGYSK----FLFDEYVRQI-LPEA 158
Query: 182 ---VITTRGNNVYGPNQFPEKLIPKFIL-----LAMKGKPLPIHGDGSNVRSYLYCEDVA 233
++ R NVYGP + + + L P G + R ++Y DVA
Sbjct: 159 NSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218
Query: 234 EAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQ---R 290
+ L G V ++N+GT + VA + + QI+++ PF D+ R
Sbjct: 219 DVNLWFLENG-VSGIFNLGTGRAESFQAVAD---ATLAYHKKGQIEYI---PFPDKLKGR 271
Query: 291 Y----FLDVQKLKQLGWYERV-TWEEGLQKTMKW 319
Y D+ L+ G+ + T EG+ + M W
Sbjct: 272 YQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAW 305
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 55/280 (19%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL-----DYCSNLKNLNP-----SRLS 57
K +++ G G+ L + Y++ ++D L D+ L++L P R+S
Sbjct: 2 KRVMVIGGDGYCGWATALHL--SKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS 59
Query: 58 PNFKFIKG---DVASADLVHFILLTEKI-----DTIMHFAAQ-----THVDNSFGNSFEF 104
+K + G ++ D+ F L E D+++HF Q + +D S +
Sbjct: 60 -RWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS--RAVYT 116
Query: 105 TKNNIYGTHVLLEACKITGQIKRFIHVSTDEVYG----ETDEDAVVGNHEA-SQLLP--- 156
NN+ GT +L A K G+ + + T YG + +E + H + LP
Sbjct: 117 QHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 176
Query: 157 --TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG----PNQFPEKL---------- 200
++ Y +K + +++G+ VYG + E+L
Sbjct: 177 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF 236
Query: 201 ---IPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFD 237
+ +F + A G PL ++G G R YL D + +
Sbjct: 237 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE 276
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 122/315 (38%), Gaps = 48/315 (15%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
+ ++ITGA G + + L N EY I DK K + D+
Sbjct: 6 ERVIITGANGQLGKQLQEEL--NPEEYDIYPFDK-------------------KLL--DI 42
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ V ++ + I+H AA T VD + N G + A ++ G +
Sbjct: 43 TNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG--AK 100
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
+++STD V+ D G E P N Y A+K E V Y R
Sbjct: 101 LVYISTDYVF---QGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKY----FIVRT 153
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVG- 246
+ +YG ++ + I L + + + + D + S Y D+ + ++H G
Sbjct: 154 SWLYG--KYGNNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHTSLYGT 209
Query: 247 -HVYNIGT----KKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQL 301
HV N G+ + +++ A + ++ + + RP +Y + + +L
Sbjct: 210 YHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTE-EFGAAAARP----KYSIFQHNMLRL 264
Query: 302 -GWYERVTWEEGLQK 315
G+ + +WEEGL++
Sbjct: 265 NGFLQMPSWEEGLER 279
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 138/336 (41%), Gaps = 58/336 (17%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCS---NLKNLNPSRLSPNFKFIKGD 66
I++TG AGFI S++ + + + I+V+D L + NL +LN + F+
Sbjct: 49 IIVTGGAGFIGSNIV-KALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 107
Query: 67 VASADLVHFILLTEKIDTIMHFAA---QTHVDNSF--GNSFEFTKNNIYGTHVLLEACKI 121
+A + ++ I H A T D + N+++++K LL C +
Sbjct: 108 MAGEEF-------GDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKE-------LLHYC-L 152
Query: 122 TGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
+I F++ S+ YG D + + E + P N + +K L Y R LP
Sbjct: 153 EREIP-FLYASSAATYGGRTSD-FIESREYEK--PLNVFGYSK----FLFDEYVRQI-LP 203
Query: 182 -----VITTRGNNVYGPNQFPEKLIPKFIL-----LAMKGKPLPIHGDGSNVRSYLYCED 231
++ R NVYGP + + + L P G + R ++Y D
Sbjct: 204 EANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGD 263
Query: 232 VAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQ-- 289
VA+ L G V ++N+GT + VA + + QI+++ PF D+
Sbjct: 264 VADVNLWFLENG-VSGIFNLGTGRAESFQAVAD---ATLAYHKKGQIEYI---PFPDKLK 316
Query: 290 -RY----FLDVQKLKQLGWYERV-TWEEGLQKTMKW 319
RY D+ L+ G+ + T EG+ + M W
Sbjct: 317 GRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAW 352
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 108/278 (38%), Gaps = 55/278 (19%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL-----DYCSNLKNLNP-----SRLSPN 59
+++ G G+ L + Y++ ++D L D+ L++L P R+S
Sbjct: 14 VMVIGGDGYCGWATALHL--SKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS-R 70
Query: 60 FKFIKG---DVASADLVHFILLTEKI-----DTIMHFAAQ-----THVDNSFGNSFEFTK 106
+K + G ++ D+ F L E D+++HF Q + +D S +
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS--RAVYTQH 128
Query: 107 NNIYGTHVLLEACKITGQIKRFIHVSTDEVYG----ETDEDAVVGNHEA-SQLLP----- 156
NN+ GT +L A K G+ + + T YG + +E + H + LP
Sbjct: 129 NNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA 188
Query: 157 TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG----PNQFPEKL------------ 200
++ Y +K + +++G+ VYG + E+L
Sbjct: 189 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248
Query: 201 -IPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFD 237
+ +F + A G PL ++G G R YL D + +
Sbjct: 249 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE 286
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 13/146 (8%)
Query: 386 KFLIYGRTGWIGGLLSKICEKKG---IPFEYGKGRLENRSQLLADIQNVKPTHVFNAAGV 442
K LI G G +G + K + K IP + + N + KP V N A
Sbjct: 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAH 73
Query: 443 TGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIFEYDAKHPEGTGIG 502
T VD CE + N +G LA G ++ +T +F+ +AK P
Sbjct: 74 TA---VDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEP------ 124
Query: 503 FKEEDKPNFTGSFYSKTKAMVEELLK 528
E D+ N S Y KTK E +K
Sbjct: 125 ITEFDEVN-PQSAYGKTKLEGENFVK 149
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 160 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN--------QFPEKLIPKFILLAMKG 211
YS K ++ AY + YG NV+GP+ LI K L G
Sbjct: 143 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSG 202
Query: 212 KPLPIHGDGSNVRSYLYCEDVAEAFDTILHK 242
L + G G+ R ++Y D+A+ F +L +
Sbjct: 203 SALTVWGTGNPRRQFIYSLDLAQLFIWVLRE 233
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 160 YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN--------QFPEKLIPKFILLAMKG 211
YS K ++ AY + YG NV+GP+ LI K L G
Sbjct: 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSG 201
Query: 212 KPLPIHGDGSNVRSYLYCEDVAEAFDTILHK 242
L + G G+ R ++Y D+A+ F +L +
Sbjct: 202 SALTVWGTGNPRRQFIYSLDLAQLFIWVLRE 232
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 108/281 (38%), Gaps = 55/281 (19%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL-----DYCSNLKNLNP-----SRLSPN 59
+++ G G+ L + Y++ ++D L D+ L++L P R+S
Sbjct: 14 VMVIGGDGYCGWATALHL--SKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS-R 70
Query: 60 FKFIKG---DVASADLVHFILLTEKI-----DTIMHFAAQ-----THVDNSFGNSFEFTK 106
+K + G ++ D+ F L E D+++HF Q + +D S +
Sbjct: 71 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRS--RAVYTQH 128
Query: 107 NNIYGTHVLLEACKITGQIKRFIHVSTDEVYG----ETDEDAVVGNHEA-SQLLP----- 156
NN+ GT +L A K G+ + + YG + +E + H + LP
Sbjct: 129 NNVIGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA 188
Query: 157 TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG----PNQFPEKL------------ 200
++ Y +K + +++G+ VYG + E+L
Sbjct: 189 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT 248
Query: 201 -IPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTIL 240
+ +F + A G PL ++G G R YL D + + +
Sbjct: 249 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI 289
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 41/225 (18%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYP-EYKIVVLDKLD-------------------YCSN 47
+ +L+TGA GF+ ++ L+ + +++ L + + +
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133
Query: 48 LKNLNPSRLSPNFKFIKGDVASADL----VHFILLTEKIDTIMHFAAQTHVDNSFGNSFE 103
K L RL + + GD + DL + L E +D I+ AA N+F E
Sbjct: 134 FKELAADRL----EVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXV---NAF-PYHE 185
Query: 104 FTKNNIYGTHVLLEACKITGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNP---- 159
N+ GT L+ +T ++K F +VST +V + A + + + PT
Sbjct: 186 LFGPNVAGTAELIR-IALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGG 244
Query: 160 ----YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKL 200
Y +K E+L+ LPV R + + +L
Sbjct: 245 WAGGYGTSKWAGEVLLREANDLCALPVAVFRCGXILADTSYAGQL 289
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 144 AVVGNHEASQLLPTNPYSATKAGAEMLVMA---YGRSYGLPVITTRGNNVYGPNQFPEKL 200
AV G+H+ + + T P + T A V A + LP+ R +YGP + P
Sbjct: 105 AVYGDHDGAWVDETTPLTPTAARGRWRVXAEQQWQAVPNLPLHVFRLAGIYGPGRGP--- 161
Query: 201 IPKFILLAMKG-----KPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNI 251
F L G KP V S ++ ED+A+ + + G VYN+
Sbjct: 162 ---FSKLGKGGIRRIIKP-------GQVFSRIHVEDIAQVLAASXARPDPGAVYNV 207
>pdb|1CW0|A Chain A, Crystal Structure Analysis Of Very Short Patch Repair
(Vsr) Endonuclease In Complex With A Duplex Dna
Length = 155
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 267 CKLFSLNPDTQIKF-VENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQ 314
C LF + P T+ +F +E N +R D+ +L++LGW + WE L+
Sbjct: 72 CYLFKV-PATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR 119
>pdb|1VSR|A Chain A, Very Short Patch Repair (Vsr) Endonuclease From
Escherichia Coli
Length = 136
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 267 CKLFSLNPDTQIKF-VENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQ 314
C LF + P T+ +F +E N +R D+ +L++LGW + WE L+
Sbjct: 53 CYLFKV-PATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR 100
>pdb|1ODG|A Chain A, Very-Short-Patch Dna Repair Endonuclease Bound To Its
Reaction Product Site
Length = 134
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 267 CKLFSLNPDTQIKF-VENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQ 314
C LF + P T+ +F +E N +R D+ +L++LGW + WE L+
Sbjct: 51 CYLFKV-PATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALR 98
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 87 HFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFIHVSTDEVYG 138
H+A Q HV +S G EF +N G H + A TG K + + T + G
Sbjct: 113 HYATQEHVYDSLGE--EFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPG 162
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family
Protein From Shigella Flexneri
Length = 236
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 8 KNILITGAAGFIASHVCNRL 27
KN+LI GA G IA HV N+L
Sbjct: 24 KNVLILGAGGQIARHVINQL 43
>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus In Space Group
C2221
Length = 369
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 153 QLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG 192
Q NPY +K E L+ Y YG V R N++G
Sbjct: 96 QATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFG 135
>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
Protein Capf From Staphylococcus Aureus
Length = 369
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 153 QLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYG 192
Q NPY +K E L+ Y YG V R N++G
Sbjct: 96 QATQDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFG 135
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 93/252 (36%), Gaps = 31/252 (12%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
+ + +TGA+GFI S + RL+ + V D + L+ + + K D+
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADL 65
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
AD F + + H A ++ + E K I G ++++C ++R
Sbjct: 66 --ADEGSFDEAIKGCTGVFHVATPMDFESKDPEN-EVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 128 FIHVSTDEVYGETDEDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSYG 179
+ S+ + V + ++ + Y +K AE Y +
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKENN 182
Query: 180 LPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTI 239
+ IT V GP F +P ++ A+ PI G+ EA +I
Sbjct: 183 IDFITIIPTLVVGP--FIMSSMPPSLITALS----PITGN--------------EAHYSI 222
Query: 240 LHKGEVGHVYNI 251
+ +G+ H+ ++
Sbjct: 223 IRQGQFVHLDDL 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,027,370
Number of Sequences: 62578
Number of extensions: 915563
Number of successful extensions: 2337
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 131
length of query: 676
length of database: 14,973,337
effective HSP length: 105
effective length of query: 571
effective length of database: 8,402,647
effective search space: 4797911437
effective search space used: 4797911437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)