BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005818
(676 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 1179 bits (3051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/665 (84%), Positives = 606/665 (91%), Gaps = 1/665 (0%)
Query: 5 YTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIK 64
YTPKNILITGAAGFIASHV NRLI +YP+YKIVVLDKLDYCSNLKNLNPS+ SPNFKF+K
Sbjct: 4 YTPKNILITGAAGFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVK 63
Query: 65 GDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQ 124
GD+ASADLV+ +L+TE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK+TGQ
Sbjct: 64 GDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQ 123
Query: 125 IKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 184
I+RFIHVSTDEVYGETDEDA+VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT
Sbjct: 124 IRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 183
Query: 185 TRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGE 244
TRGNNVYGPNQFPEKLIPKFILLAM+G+ LPIHGDGSNVRSYLYCEDVAEAF+ +LHKGE
Sbjct: 184 TRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE 243
Query: 245 VGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWY 304
VGHVYNIGTKKERRV DVA DICKLF+++P+ IKFV+NRPFNDQRYFLD QKLK+LGW
Sbjct: 244 VGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKKLGWS 303
Query: 305 ERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTSMAPAIEGKVDGHDTTFMLKINNS 364
ER TWEEGL+KTM WY NP+WWGDVSGALLPHPR M P D + ++
Sbjct: 304 ERTTWEEGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPGGRHFDGSEDNSLAATLSEK 363
Query: 365 -SQSRMVVRASKSNSSRQKPFLKFLIYGRTGWIGGLLSKICEKKGIPFEYGKGRLENRSQ 423
SQ+ MVV + +SN + QKP LKFLIYG+TGWIGGLL KIC+K+GI +EYGKGRLE+RS
Sbjct: 364 PSQTHMVVPSQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSS 423
Query: 424 LLADIQNVKPTHVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNY 483
LL DIQ+VKPTHVFN+AGVTGRPNVDWCE+HK ETIR NV GTLTLADVCRE+GLLMMN+
Sbjct: 424 LLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNF 483
Query: 484 ATGCIFEYDAKHPEGTGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPIS 543
ATGCIFEYD KHPEG+GIGFKEED PNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPIS
Sbjct: 484 ATGCIFEYDDKHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPIS 543
Query: 544 SDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISVEMAKRNLSGIWNFTNPGVVSHNE 603
SDLNNPRNFITKISRYNKVVNIPNSMT+LDELLPIS+EMAKRNL GIWNFTNPGVVSHNE
Sbjct: 544 SDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNE 603
Query: 604 ILEMYKAYIDPGFKWTNFTLEEQAKVIVAPRSNNELDASKLKKEFPELLSIKESLIKNVF 663
ILEMY+ YI+P FKW NFTLEEQAKVIVAPRSNNE+DASKLKKEFPELLSIKESLIK +
Sbjct: 604 ILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAY 663
Query: 664 EPNKK 668
PNKK
Sbjct: 664 GPNKK 668
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/668 (82%), Positives = 608/668 (91%), Gaps = 5/668 (0%)
Query: 1 MATVYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNF 60
MAT Y PKNILITGAAGFIASHV NRL+ +YP+YKIVVLDKLDYCSNLKNLNPS+ SPNF
Sbjct: 1 MAT-YKPKNILITGAAGFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNF 59
Query: 61 KFIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 120
KF+KGD+ASADLV+++L+TE+IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK
Sbjct: 60 KFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
Query: 121 ITGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 180
+TGQI+RFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL
Sbjct: 120 VTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGL 179
Query: 181 PVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTIL 240
PVITTRGNNVYGPNQFPEKLIPKFILLAM GKPLPIHGDGSNVRSYLYCEDVAEAF+ +L
Sbjct: 180 PVITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVL 239
Query: 241 HKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQ 300
HKGEV HVYNIGT +ERRVIDVA DI KLF ++PD+ I++VENRPFNDQRYFLD QKLK+
Sbjct: 240 HKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKK 299
Query: 301 LGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTSMAPAIEGKVDGHDTTFMLK 360
LGW ER WEEGL+KTM+WY NP+WWGDVSGALLPHPR M P + DG D K
Sbjct: 300 LGWCERTNWEEGLRKTMEWYTENPEWWGDVSGALLPHPRMLMMPG-DRHSDGSDEH---K 355
Query: 361 INNSSQSRMVVRASKSNSSRQKPFLKFLIYGRTGWIGGLLSKICEKKGIPFEYGKGRLEN 420
+ +Q+ VV +K+ S K LKFLIYG+TGW+GGLL K+CEK+GIP+EYGKGRLE+
Sbjct: 356 NADGNQTFTVVTPTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLED 415
Query: 421 RSQLLADIQNVKPTHVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLM 480
R+ L+ADI+++KP+HVFNAAG+TGRPNVDWCE+HK ETIR NV GTLTLADVCREN LLM
Sbjct: 416 RASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLM 475
Query: 481 MNYATGCIFEYDAKHPEGTGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRM 540
MN+ATGCIFEYDA HPEG+GIGFKEEDKPNFTGSFYSKTKAMVEELL+E+DNVCTLRVRM
Sbjct: 476 MNFATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRM 535
Query: 541 PISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISVEMAKRNLSGIWNFTNPGVVS 600
PISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPIS+EMAKRNL GIWNFTNPGVVS
Sbjct: 536 PISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVS 595
Query: 601 HNEILEMYKAYIDPGFKWTNFTLEEQAKVIVAPRSNNELDASKLKKEFPELLSIKESLIK 660
HNEILEMYK+YI+P FKW+NF LEEQAKVIVAPRSNNE+D +KL KEFPE+LSIK+SLIK
Sbjct: 596 HNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIK 655
Query: 661 NVFEPNKK 668
VFEPNK+
Sbjct: 656 YVFEPNKR 663
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/666 (81%), Positives = 602/666 (90%), Gaps = 3/666 (0%)
Query: 3 TVYTPKNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKF 62
T Y PKNILITGAAGFIASHV NRLI NYP+YKIVVLDKLDYCS+LKNL+PS SPNFKF
Sbjct: 4 TTYKPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKF 63
Query: 63 IKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKIT 122
+KGD+AS DLV+++L+TE IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK+T
Sbjct: 64 VKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVT 123
Query: 123 GQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 182
GQI+RFIHVSTDEVYGETDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV
Sbjct: 124 GQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 183
Query: 183 ITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHK 242
ITTRGNNVYGPNQFPEK+IPKFILLAM GKPLPIHGDGSNVRSYLYCEDVAEAF+ +LHK
Sbjct: 184 ITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHK 243
Query: 243 GEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLG 302
GE+GHVYN+GTK+ERRVIDVA DICKLF +P++ I+FVENRPFNDQRYFLD QKLK+LG
Sbjct: 244 GEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKKLG 303
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTSMAPAIEGKVDGHDTTFMLKIN 362
W ER WE+GL+KTM WY NP+WWGDVSGALLPHPR M P G++ + +
Sbjct: 304 WQERTNWEDGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPG--GRLSDGSSEKKDVSS 361
Query: 363 NSSQSRMVVRASKSNSSRQKPFLKFLIYGRTGWIGGLLSKICEKKGIPFEYGKGRLENRS 422
N+ Q+ VV K+ S K LKFLIYG+TGW+GGLL K+CEK+GI +EYGKGRLE+R+
Sbjct: 362 NTVQTFTVV-TPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRA 420
Query: 423 QLLADIQNVKPTHVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMN 482
L+ADI+++KPTHVFNAAG+TGRPNVDWCE+HKPETIR NV GTLTLADVCREN LLMMN
Sbjct: 421 SLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMN 480
Query: 483 YATGCIFEYDAKHPEGTGIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPI 542
+ATGCIFEYDA HPEG+GIGFKEEDKPNF GSFYSKTKAMVEELL+E+DNVCTLRVRMPI
Sbjct: 481 FATGCIFEYDATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPI 540
Query: 543 SSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISVEMAKRNLSGIWNFTNPGVVSHN 602
SSDLNNPRNFITKISRYNKVV+IPNSMT+LDELLPIS+EMAKRNL GIWNFTNPGVVSHN
Sbjct: 541 SSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHN 600
Query: 603 EILEMYKAYIDPGFKWTNFTLEEQAKVIVAPRSNNELDASKLKKEFPELLSIKESLIKNV 662
EILEMYK YI+PGFKW+NFT+EEQAKVIVA RSNNE+D SKL KEFPE+LSIKESL+K V
Sbjct: 601 EILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYV 660
Query: 663 FEPNKK 668
FEPNK+
Sbjct: 661 FEPNKR 666
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 323 bits (827), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/336 (47%), Positives = 218/336 (64%), Gaps = 9/336 (2%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K +L+TG AGFIASHV L+ +YP+Y IV LDKLDYC++LKNL P N+KFI+GD+
Sbjct: 18 KRVLVTGGAGFIASHVIVSLVEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQGDI 77
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ V + EKID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A G +++
Sbjct: 78 CDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVNAAYEAG-VEK 136
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
FI+VSTDEVYG + + E+S PTNPY+++KA AE V +Y Y PV+ TR
Sbjct: 137 FIYVSTDEVYGGSLDQEF---DESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRS 193
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
+NVYGP+Q+PEK+IPKFI L + IHG G R++LY DV EAF T+L KGE G
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGE 253
Query: 248 VYNIGTKKERRVIDVATDICKLF-----SLNPDTQIKFVENRPFNDQRYFLDVQKLKQLG 302
+YNIGT E V+ +A ++ +L ++ + +V +RP ND RY + +K+ LG
Sbjct: 254 IYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLG 313
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHP 338
W +V WEEG++KT++WY N W + AL P P
Sbjct: 314 WKPKVPWEEGIKKTVEWYRKNFHNWKNAEKALEPFP 349
>sp|Q54WS6|TGDS_DICDI dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds
PE=3 SV=1
Length = 434
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/360 (46%), Positives = 220/360 (61%), Gaps = 44/360 (12%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
ILITG AGFI SH+ L + KI+VLDKLDYCSN+ NL NFKF KG++
Sbjct: 12 ILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLDYCSNINNLGCVLKELNFKFYKGNILD 71
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
++L+ I EKID ++H AA THVDNSF S +FT+NNI GTH LLE CK ++K+FI
Sbjct: 72 SELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCK-NYKLKKFI 130
Query: 130 HVSTDEVYGE--------TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
+VSTDEVYG + ++E S L PTNPYSA+KAGAE LV +Y +S+ LP
Sbjct: 131 YVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLP 190
Query: 182 VITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILH 241
VI TR NN+YGP Q+PEK+IPKFI L + K IHG G N R+YLY +D+ AFD IL
Sbjct: 191 VIITRANNIYGPKQYPEKIIPKFINLLLNNKKCTIHGTGKNTRNYLYIDDIVSAFDIILR 250
Query: 242 KGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQ------------------------ 277
KGE+G+VYNIGT E +DVA I + S+N +
Sbjct: 251 KGEIGNVYNIGTDFEISNLDVAKKIINI-SINLNNNNNNNNNNNNNNNNNNNNNNNNNNN 309
Query: 278 ----------IKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWW 327
I ++++RPFND RY ++ KL LGW + ++WEEG++KT WY +N ++W
Sbjct: 310 DFNIMDYKKFINYIDDRPFNDHRYNINYSKLSNLGWKKSISWEEGIEKTFIWYKNNRNYW 369
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 315 bits (808), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 220/336 (65%), Gaps = 9/336 (2%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K +L+TG AGFIASH+ L+ +YP Y I+ LDKLDYC++LKNL N+KFI+GD+
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ V + TEKID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A ++++
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEK 136
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
FI+VSTDEVYG + + E+S PTNPY+++KA AE V +Y Y PV+ TR
Sbjct: 137 FIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
+NVYGP+Q+PEK+IPKFI L + IHG G R++LY DV EAF T+L KG+ G
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGE 253
Query: 248 VYNIGTKKERRVIDVATDICKLF-SLNPDTQ----IKFVENRPFNDQRYFLDVQKLKQLG 302
+YNIGT E V+ +A ++ +L N +++ + +V +RP ND RY + +K+ LG
Sbjct: 254 IYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLG 313
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHP 338
W +V W+EG++KT++WY N W +V AL P P
Sbjct: 314 WRPKVPWKEGIKKTIEWYRENFHNWKNVEKALEPFP 349
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/336 (46%), Positives = 220/336 (65%), Gaps = 9/336 (2%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K +L+TG AGFIASH+ L+ +YP Y I+ LDKLDYC++LKNL N+KFI+GD+
Sbjct: 18 KRVLVTGGAGFIASHMIVSLVEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQGDI 77
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ V + TEKID ++HFAAQTHVD SF +FEFT N+YGTHVL+ A ++++
Sbjct: 78 CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFEFTYVNVYGTHVLVSAAH-EARVEK 136
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
FI+VSTDEVYG + + E+S PTNPY+++KA AE V +Y Y PV+ TR
Sbjct: 137 FIYVSTDEVYGGSLDKEF---DESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRS 193
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
+NVYGP+Q+PEK+IPKFI L + IHG G R++LY DV EAF T+L KG+ G
Sbjct: 194 SNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGE 253
Query: 248 VYNIGTKKERRVIDVATDICKLF-SLNPDTQ----IKFVENRPFNDQRYFLDVQKLKQLG 302
+YNIGT E V+ +A ++ +L N +++ + +V++RP ND RY + +K+ LG
Sbjct: 254 IYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLG 313
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHP 338
W +V W+EG++KT++WY N W + AL P P
Sbjct: 314 WRPKVPWKEGIKKTIEWYRENFHNWKNAEKALEPFP 349
>sp|Q5UR12|TGDS_MIMIV Putative dTDP-D-glucose 4,6-dehydratase OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R141 PE=3 SV=1
Length = 323
Score = 288 bits (737), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/317 (46%), Positives = 206/317 (64%), Gaps = 6/317 (1%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
KNIL+TG GFI S+ N + Y I V D DYC++++N+ + + K IKGD+
Sbjct: 2 KNILVTGGLGFIGSNFVNHISSKYDNVNIYVYDIGDYCASVENVEWNNRT---KLIKGDI 58
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ DL+ L +IDTI+HFAA +HVDNSF NS FT+ N++GTHVLLE ++ G++K
Sbjct: 59 RNFDLIMHTLTEHEIDTIVHFAAHSHVDNSFKNSLAFTETNVFGTHVLLECSRMYGKLKL 118
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
F H+STDEVYGE D + E S L PTNPY+ATKAGAE +V +Y SY LP+I R
Sbjct: 119 FFHMSTDEVYGEIDTTDT--SREVSLLCPTNPYAATKAGAEHIVKSYFLSYKLPIIIARC 176
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
NNVYG NQ+PEKLIPKFI + GK L I G G++ R++++ DVA+A D +++ G +G
Sbjct: 177 NNVYGRNQYPEKLIPKFICSLLDGKKLHIQGTGNSRRNFIHAIDVADAVDLVINNGVIGE 236
Query: 248 VYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYE-R 306
YNIG E V+DVA +C + +N + Q+++V +R FND RY + K+K LGW + R
Sbjct: 237 TYNIGVTNEHSVLDVAQILCDIAGVNLENQLEYVPDRLFNDFRYNITNDKIKSLGWEQSR 296
Query: 307 VTWEEGLQKTMKWYISN 323
+++ L + WY N
Sbjct: 297 KDFKKELVELFDWYKVN 313
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 253 bits (646), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 200/339 (58%), Gaps = 23/339 (6%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG AGFI S V +I N + +V +DKL Y NL++L S + F D+
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYAFEHADICD 61
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-----ITGQ 124
A + I + D +MH AA++HVD S F + NI GT+VLLEA + + +
Sbjct: 62 AVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALNDE 121
Query: 125 IK---RFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAY 174
K RF H+STDEVYG+ N+EA L P++PYSA+KA ++ LV A+
Sbjct: 122 KKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 175 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
R+YGLP I T +N YGP FPEKLIP IL A++GK LPI+G G +R +LY ED A
Sbjct: 182 KRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR 241
Query: 235 AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFS-LNPD-----TQIKFVENRPFND 288
A T++ +G+ G YNIG E++ IDV IC L + P QI +V +RP +D
Sbjct: 242 ALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGHD 301
Query: 289 QRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDW 326
+RY +D K+ ++LGW + T+E G++KT++WY++N +W
Sbjct: 302 RRYAIDADKISRELGWKPQETFESGIRKTVEWYLANTNW 340
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 199/344 (57%), Gaps = 25/344 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
+ ILITG AGFI S + R I N +VV+DKL Y NL +L P S F F K D+
Sbjct: 2 RKILITGGAGFIGSALV-RYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDI 60
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-----IT 122
+ + + D +MH AA++HVD S F + NI GT+ LLEA + +T
Sbjct: 61 CDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 123 GQIK---RFIHVSTDEVYGE--TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRS 177
K RF H+STDEVYG+ + +D E + P++PYSA+KA ++ LV A+ R+
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFT---ETTPYAPSSPYSASKASSDHLVRAWLRT 177
Query: 178 YGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFD 237
YGLP + T +N YGP FPEKLIP IL A+ GK LP++G+G +R +LY ED A A
Sbjct: 178 YGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALY 237
Query: 238 TILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ---------IKFVENRPFN 287
+ G+VG YNIG ER+ +DV IC+L L P+ I FV +RP +
Sbjct: 238 CVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPHGVAHYRDLITFVADRPGH 297
Query: 288 DQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV 330
D RY +D K+ ++LGW + T+E G++KT++WY++N WW V
Sbjct: 298 DLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANESWWKQV 341
>sp|P55294|RMLB_NEIMB dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rfbB1 PE=3 SV=2
Length = 355
Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/345 (41%), Positives = 201/345 (58%), Gaps = 27/345 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
+ IL+TG AGFI S V +I N + +V +DKL Y NL++L +P + F + D+
Sbjct: 2 RKILVTGGAGFIGSAVVRHIIRNTRD-AVVNVDKLTYAGNLESLTEVADNPRYAFEQVDI 60
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK- 126
+ + + D +MH AA++HVD S G++ EF + NI GT LLEA + Q
Sbjct: 61 CDRAELDRVFAQYRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYWQQMP 120
Query: 127 -------RFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 176
RF H+STDEVYG+ TD+ E + P++PYSA+KA ++ LV A+ R
Sbjct: 121 SEQHEAFRFHHISTDEVYGDLGGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLR 176
Query: 177 SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAF 236
+YGLP I T +N YGP FPEKLIP IL A+ GKPLP++GDG +R +L+ ED A A
Sbjct: 177 TYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARAL 236
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ---------IKFVENRPF 286
++ +G VG YNIG E+ I+V IC L L P+ I FV++RP
Sbjct: 237 YQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPG 296
Query: 287 NDQRYFLDVQKLKQ-LGWYERVTWEEGLQKTMKWYISNPDWWGDV 330
+D RY +D K+++ LGW T+E GL+KT++WY+ N WW +V
Sbjct: 297 HDVRYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDNKTWWQNV 341
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 206/347 (59%), Gaps = 24/347 (6%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG AGFI S V +I N + +V +DKL Y NL++L S + F D+
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLAEISDSERYSFENADICD 61
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-----ITGQ 124
A+ ++D +MH AA++HVD S F + NI GT+VLLEA + + +
Sbjct: 62 AEGDGLYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSGLDDE 121
Query: 125 IK---RFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAY 174
K RF H+STDEVYG+ V ++E QL P++PYSA+KA ++ LV A+
Sbjct: 122 KKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 175 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
R+YGLP I + +N YGP FPEKLIP IL A++GK LPI+G G +R +LY ED A
Sbjct: 182 KRTYGLPTIVSNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR 241
Query: 235 AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFS-LNPD-----TQIKFVENRPFND 288
A T++ +G+ G YNIG E++ IDV IC L + P QI +V +RP +D
Sbjct: 242 ALYTVVTEGKAGETYNIGGHNEKKNIDVVFTICDLLDEIVPKEKSYREQITYVADRPGHD 301
Query: 289 QRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV-SGA 333
+RY +D K+ ++LGW + T+E G++KT++WY++N +W +V SGA
Sbjct: 302 RRYAIDADKISRELGWKPQETFESGIRKTVEWYLANTNWVENVKSGA 348
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 249 bits (636), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 145/347 (41%), Positives = 201/347 (57%), Gaps = 24/347 (6%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG AGFI S V +I N + +V +DKL Y N ++L S + F D+
Sbjct: 3 ILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNRESLADVSDSERYVFEHADICD 61
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-----ITGQ 124
A + I + D +MH AA++HVD S F + NI GT+VLLEA + +
Sbjct: 62 APAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDSD 121
Query: 125 IK---RFIHVSTDEVYGETDEDAVVGNHEASQLL-------PTNPYSATKAGAEMLVMAY 174
K RF H+STDEVYG+ V N E L P++PYSA+KA ++ LV A+
Sbjct: 122 KKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 175 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
R+YGLP I T +N YGP FPEKLIP IL A++GK LPI+G G +R +LY ED A
Sbjct: 182 KRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHAR 241
Query: 235 AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFS-LNPD-----TQIKFVENRPFND 288
A T++ +G+ G YNIG E++ IDV IC L + P QI +V +RP +D
Sbjct: 242 ALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGHD 301
Query: 289 QRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV-SGA 333
+RY +D +K+ + LGW + T+E G++KT++WY+SN W +V SGA
Sbjct: 302 RRYAIDAEKIGRALGWKPQETFESGIRKTVEWYLSNTKWVDNVKSGA 348
>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044
/ CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2
Length = 320
Score = 249 bits (635), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 192/324 (59%), Gaps = 13/324 (4%)
Query: 10 ILITGAAGFIASHVCNRLIGN-----YPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIK 64
IL+TG AGFI SH LI P ++ V+DKL Y NL+NL + P F F++
Sbjct: 3 ILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFVR 62
Query: 65 GDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQ 124
GD+ L+ ++ + DT+ HFAA+THVD S S F +N+ GT VLL+A +
Sbjct: 63 GDICDEGLIEGLM--ARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAA-LRHH 119
Query: 125 IKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 184
I RF+HVSTDEVYG D + H L P +PY+A+KAG+++L +AY +++G+ V+
Sbjct: 120 IGRFLHVSTDEVYGSIDTGSWAEGHP---LAPNSPYAASKAGSDLLALAYHQTHGMDVVV 176
Query: 185 TRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGE 244
TR +N YGP QFPEK+IP F+ + G +P++GDG N+R +L+ D L G
Sbjct: 177 TRCSNNYGPRQFPEKMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDHCRGLALALGAGR 236
Query: 245 VGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLGW 303
G VY+IG E +++ T+I P ++I FV +R +D+RY LD K+ +LG+
Sbjct: 237 AGEVYHIGGGWEATNLEL-TEILLEACGAPASRISFVTDRKGHDRRYSLDYSKIAGELGY 295
Query: 304 YERVTWEEGLQKTMKWYISNPDWW 327
RV + +G+ +T+ WY +N WW
Sbjct: 296 RPRVDFTDGIAETVAWYRANRSWW 319
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 248 bits (634), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 199/338 (58%), Gaps = 27/338 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
KNIL+TG AGFI S V +I N + +V LDKL Y NL++L +P + F + D+
Sbjct: 7 KNILVTGGAGFIGSAVVRHIIQNTRD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDI 65
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK- 126
+ + + D +MH AA++HVD + G++ EF + NI GT LLEA + Q
Sbjct: 66 CDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMP 125
Query: 127 -------RFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 176
RF H+STDEVYG+ TD+ E + P++PYSA+KA A+ LV A+ R
Sbjct: 126 SEKREAFRFHHISTDEVYGDLHGTDDLFT----ETTPYAPSSPYSASKAAADHLVRAWQR 181
Query: 177 SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAF 236
+Y LP I + +N YGP QFPEKLIP IL A+ GKPLP++GDG+ +R +L+ ED A A
Sbjct: 182 TYRLPSIVSNCSNNYGPRQFPEKLIPLMILNALSGKPLPVYGDGAQIRDWLFVEDHARAL 241
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ---------IKFVENRPF 286
++ +G VG YNIG E+ ++V IC L L P+ I FV++RP
Sbjct: 242 YQVVTEGVVGETYNIGGHNEKTNLEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPG 301
Query: 287 NDQRYFLDVQKLKQ-LGWYERVTWEEGLQKTMKWYISN 323
+D RY +D K+++ LGW T+E GL+KT++WY+ N
Sbjct: 302 HDARYAVDAAKIRRDLGWLPLETFESGLRKTVQWYLDN 339
>sp|P26391|RMLB_SALTY dTDP-glucose 4,6-dehydratase OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=rfbB PE=1 SV=1
Length = 361
Score = 246 bits (629), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/347 (40%), Positives = 201/347 (57%), Gaps = 24/347 (6%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
ILITG AGFI S V +I N + +V +DKL Y NL++L+ S + F D+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK----ITGQI 125
+ + I + D +MH AA++HVD S F + NI GT+ LLE + G+
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 126 K----RFIHVSTDEVYGETDEDAVVGNH-------EASQLLPTNPYSATKAGAEMLVMAY 174
K RF H+STDEVYG+ V N E + P++PYSA+KA ++ LV A+
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAW 181
Query: 175 GRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAE 234
R+YGLP I T +N YGP FPEKLIP IL A++GKPLPI+G G +R +LY ED A
Sbjct: 182 RRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHAR 241
Query: 235 AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLF------SLNPDTQIKFVENRPFND 288
A ++ +G+ G YNIG E++ +DV IC L + + QI +V +RP +D
Sbjct: 242 ALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301
Query: 289 QRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV-SGA 333
+RY +D K+ ++LGW T+E G++KT++WY++N W +V SGA
Sbjct: 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGA 348
>sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1
Length = 341
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 197/338 (58%), Gaps = 27/338 (7%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
+ IL+TG AGFI S V +I N + +V LDKL Y NL++L +P + F + D+
Sbjct: 2 RKILVTGGAGFIGSAVVRHIIRNTQD-SVVNLDKLTYAGNLESLTDIADNPRYAFEQVDI 60
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK- 126
+ + + D +MH AA++HVD S G++ EF + NI GT LLEA + Q
Sbjct: 61 CDRAELDRVFAQHRPDAVMHLAAESHVDRSIGSAGEFIQTNIVGTFNLLEAARAYRQQMP 120
Query: 127 -------RFIHVSTDEVYGE---TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 176
RF H+STDEVYG+ TD+ E + P++PYSA+KA ++ LV A+ R
Sbjct: 121 SEKHEAFRFHHISTDEVYGDLSGTDDLFT----ETAPYAPSSPYSASKASSDHLVRAWLR 176
Query: 177 SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAF 236
+YGLP I T +N YGP FPEKLIP IL A+ GKPLP++GDG +R +L+ ED A A
Sbjct: 177 TYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALDGKPLPVYGDGMQIRDWLFVEDHARAL 236
Query: 237 DTILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ---------IKFVENRPF 286
++ +G VG YNIG E+ I+V IC L L P+ I FV++RP
Sbjct: 237 YQVVTEGVVGETYNIGGHNEKANIEVVKTICALLEELAPEKPAGVARYEDLITFVQDRPG 296
Query: 287 NDQRYFLDVQKLKQ-LGWYERVTWEEGLQKTMKWYISN 323
+D RY +D K+++ LGW T+E GL+KT++WY+ N
Sbjct: 297 HDARYAVDTAKIRRDLGWQPLETFESGLRKTVQWYLDN 334
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 188/333 (56%), Gaps = 21/333 (6%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVASA 70
L+TG AGFI + + ++V LD L Y NL L + + F+KGD+
Sbjct: 5 LVTGRAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDG 62
Query: 71 DLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------IT 122
LV +L + D +++FAA++HVD S F + N+ GT LLEA +
Sbjct: 63 ALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTR 122
Query: 123 GQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 182
RF+HVSTDEVYG E E + P +PYSA+KA ++ LV A+ +YGLPV
Sbjct: 123 RDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 183 ITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHK 242
+TT +N YGP FPEKLIP I A+ G+PLP++GDG VR +L+ D EA T+L K
Sbjct: 181 LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAK 240
Query: 243 GEVGHVYNIGTKKERRVIDVATDICKLFSLN--------PDTQIKFVENRPFNDQRYFLD 294
G VG YN+G ER+ I+V IC L + ++QI +V +RP +D+RY +D
Sbjct: 241 GRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAID 300
Query: 295 VQKLK-QLGWYERVTWEEGLQKTMKWYISNPDW 326
KLK +LGW T+E+G+ +T+ WY++N W
Sbjct: 301 ASKLKDELGWEPAYTFEQGIAQTVDWYLTNQTW 333
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 242 bits (617), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 187/333 (56%), Gaps = 21/333 (6%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVASA 70
L+TG AGFI + + ++V LD L Y NL L + + F+KGD+
Sbjct: 5 LVTGGAGFIGGNFVLEAVSR--GIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDG 62
Query: 71 DLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK--------IT 122
LV +L + D +++FAA++HVD S F + N+ GT LLEA +
Sbjct: 63 ALVTRLLQEHQPDAVLNFAAESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPDTR 122
Query: 123 GQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPV 182
RF+HVSTDEVYG E E + P +PYSA+KA ++ LV A+ +YGLPV
Sbjct: 123 RDAFRFLHVSTDEVYGTLGETGKF--TETTPYAPNSPYSASKAASDHLVRAFHHTYGLPV 180
Query: 183 ITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHK 242
+TT +N YGP FPEKLIP I A+ G+PLP++GDG VR +L+ D EA T+L K
Sbjct: 181 LTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAK 240
Query: 243 GEVGHVYNIGTKKERRVIDVATDICKLFSLN--------PDTQIKFVENRPFNDQRYFLD 294
G VG YN+G ER+ I+V IC L + ++QI +V +RP +D+RY +D
Sbjct: 241 GRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAID 300
Query: 295 VQKLK-QLGWYERVTWEEGLQKTMKWYISNPDW 326
KLK +LGW T+E+G+ T+ WY++N W
Sbjct: 301 ASKLKDELGWEPAYTFEQGIALTVDWYLTNQTW 333
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 195/333 (58%), Gaps = 19/333 (5%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG AGFI S + L+ E ++ +DKL Y NL +L P N++F++ D+
Sbjct: 3 ILVTGGAGFIGSALVRYLVSINAE--VLNVDKLTYAGNLASLKPVEGLRNYRFLRADICD 60
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-----ITGQ 124
++ T + D ++H AA++HVD S + +F + N+ GT +LE + ++
Sbjct: 61 RVAINEAFETFQPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQN 120
Query: 125 IKRF---IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
K F +HVSTDEVYG + E S P++PYSA+KA ++ A+ R+YGLP
Sbjct: 121 RKAFFKMLHVSTDEVYGSLGDRGQF--EEVSPYDPSSPYSASKAASDHFATAWQRTYGLP 178
Query: 182 VITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILH 241
V+ + +N YGP FPEKLIP IL A+ KPLP++G GSN+R +LY +D A A I+
Sbjct: 179 VVISNCSNNYGPFHFPEKLIPLMILNALDRKPLPVYGTGSNIRDWLYVDDHARALWLIVR 238
Query: 242 KGEVGHVYNIGTKKERRVIDVATDICKLFS-LNPDTQ-----IKFVENRPFNDQRYFLDV 295
+G G YN+G + E R IDV IC L L+P+ I FV++RP +D RY +D
Sbjct: 239 EGRPGEKYNVGGRNELRNIDVVNRICLLLDELSPNASHYGDLITFVKDRPGHDARYAIDA 298
Query: 296 QKLK-QLGWYERVTWEEGLQKTMKWYISNPDWW 327
KL+ +LGW + ++ G++KT++WY+ N WW
Sbjct: 299 TKLETELGWKAQENFDTGIRKTVEWYLENGWWW 331
>sp|P39630|RMLB_BACSU dTDP-glucose 4,6-dehydratase OS=Bacillus subtilis (strain 168)
GN=rfbB PE=1 SV=1
Length = 315
Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 192/317 (60%), Gaps = 7/317 (2%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K+ LITG AGFI +L+ + +I VLDKL Y S+ + + + + F+F+KGD+
Sbjct: 3 KSYLITGGAGFIGL-TFTKLMLRETDARITVLDKLTYASHPEEMEKLKQNSRFRFVKGDI 61
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ + + E D ++HFAA++HVD S + F N+ GT+ L EA + G+ K+
Sbjct: 62 SVQEDIDRAF-DETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAV-LKGKAKK 119
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
IH+STDEVYG+ D E + L P NPYSA+KA +++LV++Y +++ LP I TR
Sbjct: 120 LIHISTDEVYGDLKADDPAFT-ETTPLSPNNPYSASKASSDLLVLSYVKTHKLPAIITRC 178
Query: 188 NNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGH 247
+N YGP Q EK+IP I A +G P+P++GDG +R +L+ ED A IL KG G
Sbjct: 179 SNNYGPYQHSEKMIPTIIRHAKQGLPVPLYGDGLQIRDWLFAEDHCRAIKLILEKGTDGE 238
Query: 248 VYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLGWYER 306
VYNIG ER ++A+ I K L + VE+R +D+RY ++ KLK +LGW +
Sbjct: 239 VYNIGGGNERTNKELASVILK--HLGCEELFAHVEDRKGHDRRYAINASKLKNELGWRQE 296
Query: 307 VTWEEGLQKTMKWYISN 323
VT+EEG+ +T++WY N
Sbjct: 297 VTFEEGIARTIQWYTDN 313
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 233 bits (593), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 194/336 (57%), Gaps = 25/336 (7%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVA 68
NIL+TG +GFI S + R I N+ + ++ +DKL Y +N L +P + F K D+
Sbjct: 3 NILVTGGSGFIGSALI-RYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDIC 61
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK-------- 120
+++ I + D +MH AA++HVD S + +F + NI GT+ LLE K
Sbjct: 62 DLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDE 121
Query: 121 ITGQIKRFIHVSTDEVYGETD--EDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY 178
RF H+STDEVYG+ E A E S P++PYSA+KA + LV A+ R+Y
Sbjct: 122 AKKTTFRFHHISTDEVYGDLSLSEPAFT---EQSPYHPSSPYSASKAASNHLVQAWHRTY 178
Query: 179 GLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDT 238
GLPVI T +N YG Q EKLIP I A+ GKPLPI+GDG +R +L+ ED +A
Sbjct: 179 GLPVIITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPIYGDGQQIRDWLFVEDHVQASYL 238
Query: 239 ILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNP---------DTQIKFVENRPFND 288
+L KG VG YNIG E+ ++V IC+L L P + + FV++RP +D
Sbjct: 239 VLTKGRVGENYNIGGNCEKTNLEVVKRICQLLEELAPSKPNHIKYYEDLMTFVKDRPGHD 298
Query: 289 QRYFLDVQKLK-QLGWYERVTWEEGLQKTMKWYISN 323
RY LD K+ +LGW ++T+E+GL++T+KWY+ N
Sbjct: 299 VRYSLDCSKIHAELGWQPQITFEQGLRQTVKWYLFN 334
>sp|P29782|RMLB_STRGR dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=1
SV=1
Length = 328
Score = 215 bits (548), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 19/326 (5%)
Query: 9 NILITGAAGFIASHVCNRLIG--NYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGD 66
++L+TGAAGFI S L+G P+ + LD L Y N NL R P ++F +GD
Sbjct: 4 HLLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGD 63
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ A + D ++H AA++HVD S ++ F + N++GT LL+A G +
Sbjct: 64 ICDAPGRRVM---AGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHG-VA 119
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 186
F+ VSTDEVYG + + E L P +PYSA+KA ++L +A+ S+GL V TR
Sbjct: 120 SFVQVSTDEVYGSLEHGSWT---EDEPLRPNSPYSASKASGDLLALAHHVSHGLDVRVTR 176
Query: 187 GNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVG 246
+N YGP QFPEKLIP+FI L M G +P++GDG NVR +L+ +D + + +G G
Sbjct: 177 CSNNYGPRQFPEKLIPRFITLLMDGHRVPLYGDGLNVREWLHVDDHVRGIEAVRTRGRAG 236
Query: 247 HVYNIG---TKKERRVIDVATDICKLFSLNPD-TQIKFVENRPFNDQRYFLDVQKL-KQL 301
VYNIG T + ++ + L + D +++VE+R +D+RY +D ++ ++L
Sbjct: 237 RVYNIGGGATLSNKELVGLL-----LEAAGADWGSVEYVEDRKGHDRRYAVDSTRIQREL 291
Query: 302 GWYERVTWEEGLQKTMKWYISNPDWW 327
G+ V +GL T+ WY + WW
Sbjct: 292 GFAPAVDLADGLAATVAWYHKHRSWW 317
>sp|Q9HDU4|YHEB_SCHPO Uncharacterized protein PB2B2.11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPB2B2.11 PE=3 SV=1
Length = 365
Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 194/355 (54%), Gaps = 48/355 (13%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL--SPNFKFIKGDVA 68
LITG AGFI S+ + + YP++ +DKL Y SN + S++ PNF+F++ D+A
Sbjct: 13 LITGGAGFIGSNFLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQPNFRFLEMDLA 72
Query: 69 S--ADLVHFILLTEKIDTIMH---FAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITG 123
+ L F++ +I+ I H FAA++ VD SF + FTKNNI T LLE +I
Sbjct: 73 TNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQNLLECVRILL 132
Query: 124 QIKR-------FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 176
K F+HVSTDEVYGE DE+A V E S+L PT+PY+A+KA ++++ +Y
Sbjct: 133 GKKEELRNRLNFVHVSTDEVYGEQDENASVD--EKSKLNPTSPYAASKAAVDLIIQSYRY 190
Query: 177 SYGLPVITTRGNNVYGPNQFPEKLIP-------KFI----LLAMKGKPLPIHGDGSNVRS 225
SY + V R NNVYGP Q+ EKLIP KFI M+ K + +HGDG + R
Sbjct: 191 SYKISVTVIRANNVYGPRQYEEKLIPMTLGKLKKFINQKSQKIMQDK-ITLHGDGLHKRK 249
Query: 226 YLYCEDVAEAFDTILHK--GEV----------GHVYNIGTKKERRVIDVATDICKLF--- 270
YL+ D A D + K EV G ++NIG+ E + + IC F
Sbjct: 250 YLHIYDFINAIDLVWMKQGSEVYHSTLESKMSGQIFNIGSDDEIDNLSLVKFICDYFLYR 309
Query: 271 -----SLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWY 320
+L+ I FV++R +ND RY L+ +K+K LGW ++ E GL+K + Y
Sbjct: 310 KLSLKNLDYSKYITFVQDRNYNDSRYSLNYEKIKSLGWRPQIPLETGLRKLIDEY 364
>sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L780 PE=4 SV=1
Length = 289
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 173/290 (59%), Gaps = 12/290 (4%)
Query: 385 LKFLIYGRTGWIGGLLSKICEKKGIPFEYGKGRLENRSQLLADIQNVKPTHVFNAAGVT- 443
+K+LI+G GWIG ++SKI E++G + R ++ S + +I +KP V + G T
Sbjct: 1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTH 60
Query: 444 --GRPNVDWCETHKP--ETIRTNVVGTLTLADVCRENGLLMMNYATGCIFEYDAKHPEGT 499
G +D+ E E ++ N+ G L LA +C++ + + TGCIFE +
Sbjct: 61 GPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFE-GQNNFSAD 119
Query: 500 GIGFKEEDKPNFTGSFYSKTKAMVEELLKEYDN-VCTLRVRMPISSDLNNPRNFITKISR 558
GF E DKPNF GS YS K + L+ +DN V LR+RMPI+ + NPR+FITKI
Sbjct: 120 EKGFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILS 178
Query: 559 YNKVVNIPNSMTILDELLPISVEMAKRNLSGIWNFTNPGVVSHNEILEMYKAYIDPGFKW 618
Y+++ +IPNSMTILD+++P+ ++MA+ +G +NFTNPG+VSHNEIL + + P W
Sbjct: 179 YSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTW 238
Query: 619 TNFTLEEQAKVIVAPRSNNELDASKLKKEFPE----LLSIKESLIKNVFE 664
N + E+Q ++ A RSNN L+ KL+ +P+ L I+E + K F+
Sbjct: 239 ENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288
>sp|P95780|RMLB_STRMU dTDP-glucose 4,6-dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rmlB PE=1 SV=2
Length = 348
Score = 205 bits (522), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 186/331 (56%), Gaps = 17/331 (5%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
KNI++TG AGFI S+ + + N+P+ + VLDKL Y N NL L + + GD+
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNRANLE-EILGDRVELVVGDI 63
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
A ++LV L K D I+H+AA++H DNS + F N GT++LLEA + R
Sbjct: 64 ADSELVD--KLAAKADAIVHYAAESHNDNSLKDPSPFIYTNFVGTYILLEAARKYDI--R 119
Query: 128 FIHVSTDEVYGETD-EDAVVGNHEA--------SQLLPTNPYSATKAGAEMLVMAYGRSY 178
F HVSTDEVYG+ + + G+ E ++ P++PYS+TKA ++++V A+ RS+
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETKYNPSSPYSSTKAASDLIVKAWVRSF 179
Query: 179 GLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDT 238
G+ + +N YGP Q EK IP+ I + G ++G+G NVR +++ D +
Sbjct: 180 GVKATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGEGKNVRDWIHTNDHSTGVWA 239
Query: 239 ILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKL 298
IL KG +G Y IG E+ +V I + S P V +R +D RY +D KL
Sbjct: 240 ILTKGRIGETYLIGADGEKNNKEVLELILEKMS-QPKNAYDHVTDRAGHDLRYAIDSTKL 298
Query: 299 K-QLGWYERVT-WEEGLQKTMKWYISNPDWW 327
+ +LGW + T +EEGL+ T+KWY + DWW
Sbjct: 299 REELGWKPQFTNFEEGLEDTIKWYTEHEDWW 329
>sp|A0QSK6|RMLB_MYCS2 dTDP-glucose 4,6-dehydratase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlB PE=1 SV=1
Length = 331
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 9/320 (2%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
+L+TG AGFI ++ + + I VLD L Y + ++L P ++ + ++GD+
Sbjct: 3 LLVTGGAGFIGANFVHLALREARTSSITVLDALTYAGSRESLAP--VADRIRLVQGDITD 60
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
A LV L + D ++HFAA+THVDN+ + F +N+ GT+ +LEA + R
Sbjct: 61 AALVGD--LVAESDAVVHFAAETHVDNALADPEPFLHSNVVGTYTILEAVR--RHNVRLH 116
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 189
HVSTDEVYG+ + D +E + P++PYS+TKA A++LV A+ RSYG+ + +N
Sbjct: 117 HVSTDEVYGDLELDNPARFNETTPYNPSSPYSSTKAAADLLVRAWVRSYGVRATISNCSN 176
Query: 190 VYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVY 249
YGP Q EK IP+ I + G+ ++G G+NVR +++ +D A IL G +G Y
Sbjct: 177 NYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVWRILTDGTIGRTY 236
Query: 250 NIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLGWYERVT 308
IG + ER + V I KL +PD V +R +D RY +D L+ +LGW + T
Sbjct: 237 LIGAECERNNLTVMRTILKLMGRDPD-DFDHVTDRAGHDLRYAIDPSTLQDELGWAPKHT 295
Query: 309 -WEEGLQKTMKWYISNPDWW 327
+E GL T+ WY +N WW
Sbjct: 296 DFEAGLTDTIDWYRANESWW 315
>sp|O06329|RMLB_MYCTU dTDP-glucose 4,6-dehydratase OS=Mycobacterium tuberculosis GN=rmlB
PE=1 SV=1
Length = 331
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 182/320 (56%), Gaps = 9/320 (2%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
+L+TG AGFI ++ + + +P+ + VLD L Y ++L + + + ++GD+
Sbjct: 3 LLVTGGAGFIGTNFVHSAVREHPDDAVTVLDALTYAGRRESL--ADVEDAIRLVQGDITD 60
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
A+LV L + D ++HFAA++HVDN+ N F N+ GT +LEA + G R
Sbjct: 61 AELVS--QLVAESDAVVHFAAESHVDNALDNPEPFLHTNVIGTFTILEAVRRHG--VRLH 116
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 189
H+STDEVYG+ + D E++ P++PYSATKAGA+MLV A+ RSYG+ + +N
Sbjct: 117 HISTDEVYGDLELDDRARFTESTPYNPSSPYSATKAGADMLVRAWVRSYGVRATISNCSN 176
Query: 190 VYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVY 249
YGP Q EK IP+ I + G+ ++G G+NVR +++ +D A IL +G +G Y
Sbjct: 177 NYGPYQHVEKFIPRQITNVLTGRRPKLYGAGANVRDWIHVDDHNSAVRRILDRGRIGRTY 236
Query: 250 NIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKL-KQLGWYERVT 308
I ++ ER + V + +L +PD V +R +D RY +D L +L W + T
Sbjct: 237 LISSEGERDNLTVLRTLLRLMDRDPD-DFDHVTDRVGHDLRYAIDPSTLYDELCWAPKHT 295
Query: 309 -WEEGLQKTMKWYISNPDWW 327
+EEGL+ T+ WY N WW
Sbjct: 296 DFEEGLRTTIDWYRDNESWW 315
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 152/320 (47%), Gaps = 18/320 (5%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKL----DYCSNLKNLNPSRLSPNFKFIKG 65
IL+TGAAGFI SH+C L+ + ++ ++ +D + LKNL F FIK
Sbjct: 3 ILVTGAAGFIGSHLCEELLKD-KKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKE 61
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFE-FTKNNIYGTHVLLEACKITGQ 124
++ +ADL L E +D I H AA V +S+GN F + +NI LLEAC+
Sbjct: 62 NLLTADLAS---LLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACR-EHS 117
Query: 125 IKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVIT 184
I+ F+ ST VYGE E + L P +PY TK E L Y +S+G+P++
Sbjct: 118 IQTFVFASTSSVYGEKQGKV----SENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVI 173
Query: 185 TRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGE 244
R VYGP Q P+ + I ++ KPL I GDG R + Y D + +L K
Sbjct: 174 LRFFTVYGPRQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKPH 233
Query: 245 -VGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGW 303
+G NIG + V+ V + I + + F + + D+ K KQL
Sbjct: 234 LIGETVNIGGAERASVLKVVSLIEDISGRK--ATLHFSDKIAGEPSNTWADISKAKQLLH 291
Query: 304 YERVT-WEEGLQKTMKWYIS 322
Y+ T ++GL + + S
Sbjct: 292 YDPATSLKDGLTNEIAYLSS 311
>sp|O06485|YFNG_BACSU Putative sugar dehydratase/epimerase YfnG OS=Bacillus subtilis
(strain 168) GN=yfnG PE=3 SV=2
Length = 322
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 151/319 (47%), Gaps = 15/319 (4%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
KN+ +TG G + S++ LI +V D + NL ++G +
Sbjct: 7 KNVFVTGCTGLLGSYLVKELIEQGANVTGLVRDHVPQ----SNLYQGEHIKKMNIVRGSL 62
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
++ L +IDT+ H AAQ V + N + NI GT +LEAC+ IKR
Sbjct: 63 EDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKR 122
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
I S+D+ YG+ + + E L +PY +K+ A+++ Y +YGLPV TR
Sbjct: 123 VIVASSDKAYGDQEN---LPYDENMPLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRC 179
Query: 188 NNVYGPNQFP-EKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGE-- 244
N+YG ++IP+ I L + G+ I DG+ VR Y Y ED +A+ + K E
Sbjct: 180 GNLYGGGDLNFNRIIPQTIQLVLNGEAPEIRSDGTFVRDYFYIEDAVQAYLLLAEKMEEN 239
Query: 245 --VGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQ-L 301
G +N + + V+++ I K +N + + K + + +L +K ++ L
Sbjct: 240 NLAGEAFNFSNEIQLTVLELVEKILK--KMNSNLKPKVLNQGSNEIKHQYLSAEKARKLL 297
Query: 302 GWYERVTWEEGLQKTMKWY 320
W T +EGL+KT++WY
Sbjct: 298 NWTPAYTIDEGLEKTIEWY 316
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 159/323 (49%), Gaps = 31/323 (9%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVAS 69
IL+TG AGFI SH+ ++LI N Y +++LD NL N + ++P +F+ D+
Sbjct: 2 ILVTGGAGFIGSHIVDKLIEN--NYDVIILD------NLTTGNKNNINPKAEFVNADIRD 53
Query: 70 ADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
DL I + ++ ++H AAQ +V NS N N+ GT +LE + K
Sbjct: 54 KDLDEKINFKD-VEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVF 112
Query: 130 HVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNN 189
S VYGE + V NH + P +PY +K E + Y R YG+ R +N
Sbjct: 113 ASSGGAVYGEPNYLPVDENHPIN---PLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSN 169
Query: 190 VYGPNQFPE---KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVG 246
VYG Q P+ +I FI +K + I GDG+ R ++Y DVA+A ++
Sbjct: 170 VYGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKA--NLMALNWKN 227
Query: 247 HVYNIGTKKERRVIDVATDICKLFSLNPDTQIKF----VENRPFNDQ--RYFLDVQKLKQ 300
+ NIGT KE T + +LF + +I F + ++P + R +LD++K +
Sbjct: 228 EIVNIGTGKE-------TSVNELFDI-IKHEIGFRGEAIYDKPREGEVYRIYLDIKKAES 279
Query: 301 LGWYERVTWEEGLQKTMKWYISN 323
LGW + +EG+++ + W +N
Sbjct: 280 LGWKPEIDLKEGIKRVVNWMKNN 302
>sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1055 PE=3 SV=1
Length = 326
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 158/324 (48%), Gaps = 10/324 (3%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLD--YCSNLKNLNPSRLS--PNFKFI 63
KNIL+TG+AGFI H+ L+ NY + K++ +D L+ Y LK L N+ FI
Sbjct: 4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFI 63
Query: 64 KGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITG 123
K D + D + L ++ID I+H AQ V S N + + K+N GT + E +
Sbjct: 64 KLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFAR-RF 122
Query: 124 QIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 183
I++ ++ S+ VYG + + + P + Y++TK E++ Y YG+ +I
Sbjct: 123 DIEKVVYASSSSVYGGNRKIPFSEDDRVDK--PISLYASTKRSNELMAHVYHHLYGIKMI 180
Query: 184 TTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R VYG P+ KF + GK + ++ G+ R + Y DV + + K
Sbjct: 181 GLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGNMERDFTYISDVVDGILRAIKKD 240
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKL-KQLG 302
++N+G K +++ I K LN + KF+ + + R + D+ K K LG
Sbjct: 241 FDYEIFNLGNSKPVKLMYFIELIEKY--LNKKAKKKFLPMQDGDVLRTYADLSKSEKLLG 298
Query: 303 WYERVTWEEGLQKTMKWYISNPDW 326
+ +VT EEGL++ W++ N DW
Sbjct: 299 YKPKVTIEEGLKRFCNWFLENKDW 322
>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1
PE=1 SV=1
Length = 420
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 150/318 (47%), Gaps = 20/318 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN-S 315
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E +++ A I L + ++I+F+ + Q+ D++K K LG
Sbjct: 316 NVSSPVNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 303 WYERVTWEEGLQKTMKWY 320
W V EEGL K + ++
Sbjct: 374 WEPVVPLEEGLNKAIHYF 391
>sp|Q9SUN3|ARAE3_ARATH Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana
GN=At4g20460 PE=2 SV=3
Length = 411
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 164/355 (46%), Gaps = 51/355 (14%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLD-----YCSNLKNL--NPSRLSPNFK 61
++L+TG AG+I SH RL+ + Y++ ++D L L+ L P RL +
Sbjct: 71 HVLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNLGAVKVLQGLFPEPGRL----Q 124
Query: 62 FIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKI 121
FI D+ A V I D +MHFAA +V S + ++ N T V+LEA
Sbjct: 125 FIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVA- 183
Query: 122 TGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLP 181
++K+ I+ ST YGE D+ +V E + +P NPY K AE +++ + ++ +
Sbjct: 184 RHKVKKLIYSSTCATYGEPDKMPIV---EVTPQVPINPYGKAKKMAEDMILDFSKNSDMA 240
Query: 182 VITTRGNNVYGPNQFPEKLI---PKFIL--------------------LAMKGKPLPIHG 218
V+ R NV G + PE + PK L L +KG G
Sbjct: 241 VMILRYFNVIGSD--PEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKT-G 297
Query: 219 DGSNVRSYLYCEDVAEAFDTILHKGE---VGHVYNIGTKKERRVIDVATDICKLFSLNPD 275
DG+ VR Y+ D+ +A L K + VG +YN+GT K R V + + CK + D
Sbjct: 298 DGTCVRDYIDVTDLVDAHVKALEKAKPRNVG-IYNVGTGKGRSVKEF-VEACKK-ATGVD 354
Query: 276 TQIKFVENRPFNDQRYFLDVQK-LKQLGWYERVT-WEEGLQKTMKWYISNPDWWG 328
++ F+ RP + + D K L+ L W R T +E L+ KW ++P +
Sbjct: 355 IKVDFLPRRPGDYAEVYSDPAKILRDLNWSARYTNLQESLEVAWKWQKTHPHGYA 409
>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2
SV=1
Length = 420
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 22/339 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E +++ A I L + ++I+F+ + Q+ D++K K LG
Sbjct: 317 -VSSPVNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTS 341
W V EEGL K + ++ ++ + +P P+ +
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEYQAN--NQYIPKPKPA 410
>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2
SV=1
Length = 420
Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 22/339 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN-S 315
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E +++ A I L + ++I+F+ + Q+ D++K K LG
Sbjct: 316 NVSSPVNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTS 341
W V EEGL K + ++ ++ + +P P+ +
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEY--QANNQYIPKPKPA 410
>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1
SV=1
Length = 420
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 22/339 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 89 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 145
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 146 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 196
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+PL ++G GS R++ Y D+ +++
Sbjct: 257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 316
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E +++ A I L + ++I+F+ + Q+ D++K K LG
Sbjct: 317 -VSSPVNLGNPEEHTILEFAQLIKNL--VGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLG 373
Query: 303 WYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTS 341
W V EEGL K + ++ ++ + +P P+ +
Sbjct: 374 WEPVVPLEEGLNKAIHYFRKELEYQAN--NQYIPKPKPA 410
>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2
Length = 313
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 156/321 (48%), Gaps = 27/321 (8%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVASA 70
L+TGAAGFI S + +RL+ + + +V LD L +NL+ + S F+F+K D+ A
Sbjct: 4 LVTGAAGFIGSTLVDRLLAD--GHGVVGLDDLS-SGRAENLHSAENSDKFEFVKADIVDA 60
Query: 71 DLVHFILLTE-KIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFI 129
DL LL E K + I H AAQ V S + N+ GT L EA ++ G +++ +
Sbjct: 61 DLTG--LLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAG-VRKVV 117
Query: 130 HVSTD-EVYGE-----TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVI 183
H S+ VYG T ED V P +PY+A K E+ + Y Y L
Sbjct: 118 HTSSGGSVYGTPPAYPTSEDMPVN--------PASPYAAGKVAGEVYLNMYRNLYDLDCS 169
Query: 184 TTRGNNVYGPNQFPE---KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTIL 240
NVYGP Q P ++ F + G+ I GDGS+ R Y++ +DV +AF
Sbjct: 170 HIAPANVYGPRQDPHGEAGVVAIFSEALLAGRTTKIFGDGSDTRDYVFVDDVVDAFVRAG 229
Query: 241 HKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQ 300
G +N+GT E ++ T I PD + +F R + +R LD + ++
Sbjct: 230 GPAGGGQRFNVGTGVETSTRELHTAIAGAVGA-PD-EPEFHPPRLGDLRRSRLDNTRARE 287
Query: 301 -LGWYERVTWEEGLQKTMKWY 320
LGW +V EG+ KT++++
Sbjct: 288 VLGWQPQVALAEGIAKTVEFF 308
>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2
SV=2
Length = 418
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 20/318 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 87 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 143
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 144 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 194
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + ++ + + P Y K AE + AY + G+ V
Sbjct: 195 LLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 254
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +G +++ FIL A++G+ L ++G GS R++ Y D+ ++++
Sbjct: 255 RIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSN 314
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
+ N+G +E +++ A I L + + I+F+ + QR D++K K LG
Sbjct: 315 -ISSPVNLGNPEEHTILEFAQLIKSLVA--SRSHIQFLPEAQDDPQRRRPDIRKAKLLLG 371
Query: 303 WYERVTWEEGLQKTMKWY 320
W V EEGL KT++++
Sbjct: 372 WEPVVPLEEGLNKTIQYF 389
>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1
PE=2 SV=1
Length = 421
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 146/318 (45%), Gaps = 20/318 (6%)
Query: 8 KNILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDV 67
K ILITG AGF+ SH+ ++L+ + +++ V+D + +N+ NF+ I DV
Sbjct: 90 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNF-FTGRKRNVEHWIGHENFELINHDV 146
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
L ++D I H A+ N N + K N GT +L K G R
Sbjct: 147 VEP-------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG--AR 197
Query: 128 FIHVSTDEVYGETDEDAVVGNH--EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
+ ST EVYG+ + + + + P Y K AE + AY + G+ V
Sbjct: 198 LLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 257
Query: 186 RGNNVYGPNQFPE--KLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
R N +GP +++ FIL A++G+ L ++G G R++ Y D+ +++
Sbjct: 258 RIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSN 317
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
V N+G +E ++ A I +L + +I F+ + QR D++K K LG
Sbjct: 318 -VSSPVNLGNPQEHSIVQFARLIKQL--VGSGGEISFLSEAQDDPQRRKPDIRKAKLLLG 374
Query: 303 WYERVTWEEGLQKTMKWY 320
W V EEGL KT+ ++
Sbjct: 375 WEPVVPLEEGLNKTIHYF 392
>sp|Q6T1X6|RMD_ANETH GDP-6-deoxy-D-mannose reductase OS=Aneurinibacillus
thermoaerophilus GN=rmd PE=1 SV=1
Length = 309
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 150/318 (47%), Gaps = 23/318 (7%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSPNFKFIKGDVASA 70
LITG AGF+ ++ N L ++ +N N ++L PN + I D+ +
Sbjct: 4 LITGVAGFVGKYLANHLTEQ----------NVEVFGTSRN-NEAKL-PNVEMISLDIMDS 51
Query: 71 DLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRFIH 130
V ++ K D I H AA++ V +S+ N N++GT +L+A + + R +
Sbjct: 52 QRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILT 111
Query: 131 VSTDEVYGET--DEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGN 188
+ + E YG +E V E +QL P +PY +KA ML Y ++YG+ +I TR
Sbjct: 112 IGSSEEYGMILPEESPV---SEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 168
Query: 189 NVYGPNQ----FPEKLIPKFILLAM-KGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKG 243
N GP Q + + + + M K +P+ G+ VR + D+ +A+ + G
Sbjct: 169 NHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG 228
Query: 244 EVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLK-QLG 302
+ G VYN+ + R+ DV + + ++ DT++ ++ RP ++LK G
Sbjct: 229 KTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTG 288
Query: 303 WYERVTWEEGLQKTMKWY 320
W R+ E+ L + ++ Y
Sbjct: 289 WKPRIPLEKSLFEILQSY 306
Score = 39.7 bits (91), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 385 LKFLIYGRTGWIGGLLSKICEKKGIPFEYGKGR-----LENRSQLLADI----------Q 429
++ LI G G++G L+ ++ + +G R L N + DI
Sbjct: 1 MRALITGVAGFVGKYLANHLTEQNVEV-FGTSRNNEAKLPNVEMISLDIMDSQRVKKVIS 59
Query: 430 NVKPTHVFNAAGVTGRPNVDWCETHKPETIRTNVVGTLTLADVCRENGLLMMNYATGCIF 489
++KP ++F+ A + +V +K T TNV GTL + D R++ L G
Sbjct: 60 DIKPDYIFHLAA---KSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE 116
Query: 490 EYDAKHPEGTGIGFKEEDKPNFTGSFYSKTKAMVEELLKEY 530
EY PE + + + + +P S Y +KA V L ++Y
Sbjct: 117 EYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQY 154
>sp|Q56093|GALE_SALTI UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2
Length = 338
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +V+LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALITEILHDHAIDTVIHFAGLKAVGESVAKPLEYYDNNVNGTLRLVSAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
I S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPEWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + + L + G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLADKSGV-HIYNLGAGVGSSVLDVVNAFSK--ACGKPINYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 DGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYSD 338
>sp|P09147|GALE_ECOLI UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE
PE=1 SV=1
Length = 338
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 155/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +++LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVIILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
FI S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPDWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + L I G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + +K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSK--ACGKPVNYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 EGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>sp|Q8H0B6|ARAE2_ORYSJ Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp.
japonica GN=UEL-2 PE=2 SV=1
Length = 391
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 152/348 (43%), Gaps = 37/348 (10%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLSP---NFKFIKG 65
++L+TG AG+I SH RL+ + Y++ ++D L + RL P +FI
Sbjct: 51 HVLVTGGAGYIGSHATLRLLRD--NYRVTIVDNLSRGNMGAVRVLQRLFPEPGRLQFIYA 108
Query: 66 DVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQI 125
D+ A V+ I D +MHFAA +V S + N T +LEA +
Sbjct: 109 DLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAY-NV 167
Query: 126 KRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITT 185
K I+ ST YGE D + EA+ P NPY K AE +++ + + + V+
Sbjct: 168 KTLIYSSTCATYGEPDTMPIT---EATPQNPINPYGKAKKMAEDIILDFSKRSEMAVMIL 224
Query: 186 RGNNVYGPN---QFPEKLIPKF----------------IL--LAMKGKPLPIHGDGSNVR 224
R NV G + + E P+ I+ L ++G P DG+ +R
Sbjct: 225 RYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPT-ADGTCIR 283
Query: 225 SYLYCEDVAEAFDTILHKGEVGHV--YNIGTKKERRVIDVATDICKLFSLNPDTQIKFVE 282
Y+ D+ +A L K + G V YN+GT R V + + CK + ++ F+
Sbjct: 284 DYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEF-VEACK-SATGASIKVSFLT 341
Query: 283 NRPFNDQRYFLDVQKL-KQLGWYER-VTWEEGLQKTMKWYISNPDWWG 328
RP + + D K+ +L W R + E L KW ++P+ +G
Sbjct: 342 RRPGDYAEVYSDPSKIHDELNWTARYIDLRESLSTAWKWQKAHPNGYG 389
>sp|Q59678|GALE_PASHA UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3
SV=1
Length = 338
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 159/345 (46%), Gaps = 38/345 (11%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRLS-PNFKFIKGDVA 68
IL+TG AG+I SH L+ E IVVLD L S + +++ + KF +GD+
Sbjct: 3 ILVTGGAGYIGSHTLVELLNENRE--IVVLDNLSNSSEVSLERVKQITGKSVKFYQGDIL 60
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRF 128
D++ I +I++++HFA V + N + KNN+ G+ VL+E + +
Sbjct: 61 DRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEEM-LKANVNTI 119
Query: 129 IHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY-GLPVITTRG 187
+ S+ VYG+ +V + TNPY +K E ++ +++ L + R
Sbjct: 120 VFSSSATVYGDPQIIPIVESCPVGG--TTNPYGTSKYMVERILEDTVKAFPQLSAVVLRY 177
Query: 188 NNVYG----------PNQFPEKLIPKFILLAMKGKP-LPIHG------DGSNVRSYLYCE 230
N G PN P L+P +A+ P L + G DG+ VR Y++
Sbjct: 178 FNRVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVFGGDYNTHDGTGVRDYIHVV 237
Query: 231 DVA----EAFDTILHKGEVG-HVYNIGTKKERRVIDVATDICKLFSLNPDTQI--KFVEN 283
D+A +A D H+ + G HVYN+GT V+ D+ K F I K V+
Sbjct: 238 DLALGHLKALDK--HQNDAGFHVYNLGTGTGYSVL----DMVKAFEAANGITIPYKVVDR 291
Query: 284 RPFNDQRYFLDVQK-LKQLGWYERVTWEEGLQKTMKWYISNPDWW 327
RP + + QK L+QLGW E+ ++ T W +NP+ +
Sbjct: 292 RPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPNGY 336
>sp|P22715|GALE_SALTY UDP-glucose 4-epimerase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=galE PE=3 SV=2
Length = 338
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 36/346 (10%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNP--SRLSPNF-KFIKGD 66
+L+TG +G+I SH C +L+ N + +V+LD L C++ +++ P RL F++GD
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQN--GHDVVILDNL--CNSKRSVLPVIERLGGKHPTFVEGD 58
Query: 67 VASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIK 126
+ + L+ IL IDT++HFA V S E+ NN+ GT L+ A + +K
Sbjct: 59 IRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVNGTLRLVSAMR-AANVK 117
Query: 127 RFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLV-----------MAYG 175
I S+ VYG+ + V + P +PY +K E ++ +A
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGT--PQSPYGKSKLMVEQILTDLQKAQPEWSIALL 175
Query: 176 RSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLY 228
R + G+ P P L+P +A+ + + L + G DG+ VR Y++
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVFGNDYPTEDGTGVRDYIH 235
Query: 229 CEDVAE----AFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENR 284
D+A+ A + + K V H+YN+G V+DV K + F R
Sbjct: 236 VMDLADGHVVAMEKLADKSGV-HIYNLGAGVGSSVLDVVNAFSK--ACGKPINYHFAPRR 292
Query: 285 PFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
+ Y+ D K ++L W T +E Q T W +P + D
Sbjct: 293 DGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYPD 338
>sp|P55180|GALE_BACSU UDP-glucose 4-epimerase OS=Bacillus subtilis (strain 168) GN=galE
PE=3 SV=1
Length = 339
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 150/338 (44%), Gaps = 33/338 (9%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSR--LSPNFKFIKGDV 67
IL+TG AG+I SH C L+ + Y+IVVLD L S+ + LN + + F + D+
Sbjct: 3 ILVTGGAGYIGSHTCVELLNS--GYEIVVLDNLS-NSSAEALNRVKEITGKDLTFYEADL 59
Query: 68 ASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKR 127
+ V + +I+ ++HFA V S ++ NN+ GT +L EA + G +K+
Sbjct: 60 LDREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYG-VKK 118
Query: 128 FIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVM-AYGRSYGLPVITTR 186
+ S+ VYG + + E L TNPY TK E ++ + V R
Sbjct: 119 IVFSSSATVYGVPETSPIT---EDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLR 175
Query: 187 GNNVYG----------PNQFPEKLIPKFILLAM-KGKPLPIHG------DGSNVRSYLYC 229
N +G PN P L+P +A+ K + L + G DG+ VR Y++
Sbjct: 176 YFNPFGAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHV 235
Query: 230 EDVAEAFDTILHK---GEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPF 286
D+AE L K YN+GT V+++ K+ + +F + RP
Sbjct: 236 VDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSG--KEVPYRFADRRPG 293
Query: 287 NDQRYFLDVQKLK-QLGWYERVTWEEGLQKTMKWYISN 323
+ F D K K +LGW + EE + +W SN
Sbjct: 294 DIATCFADPAKAKRELGWEAKRGLEEMCADSWRWQSSN 331
>sp|P24325|GALE_HAEIN UDP-glucose 4-epimerase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=galE PE=3 SV=2
Length = 338
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 152/358 (42%), Gaps = 60/358 (16%)
Query: 10 ILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDYCSNLKNLNPSRL-------SPNFKF 62
IL+TG AG+I SH L+ E +VVLD NL N +P L KF
Sbjct: 3 ILVTGGAGYIGSHTVVELLNVGKE--VVVLD------NLCNSSPKSLERVKQITGKEAKF 54
Query: 63 IKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKIT 122
+GD+ L+ I +I++++HFA V S E+ NN+ GT VL++ K
Sbjct: 55 YEGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKA 114
Query: 123 GQIKRFIHVSTDEVYGE-----TDEDAVVGNHEASQLLPTNPYSATK----------AGA 167
G + F+ S+ VYG+ ED VG TNPY +K A A
Sbjct: 115 G-VWNFVFSSSATVYGDPKIIPITEDCEVGG-------TTNPYGTSKYMVEQILRDTAKA 166
Query: 168 E----MLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIP--------KFILLAMKGKPLP 215
E M ++ Y G G + PN P L+P K L++ G
Sbjct: 167 EPKFSMTILRYFNPVGAHESGLIGED---PNGIPNNLLPYISQVAIGKLAQLSVFGSDYD 223
Query: 216 IHGDGSNVRSYLYCEDVAEAFDTIL--HKGEVG-HVYNIGTKKERRVIDVATDICKLFSL 272
H DG+ VR Y++ D+A L H+ + G H+YN+GT V+D+ K +
Sbjct: 224 TH-DGTGVRDYIHVVDLAVGHLKALQRHENDAGLHIYNLGTGHGYSVLDMVKAFEK--AN 280
Query: 273 NPDTQIKFVENRPFNDQRYFLDVQ-KLKQLGWYERVTWEEGLQKTMKWYISNPDWWGD 329
N K VE R + + D K+LGW E+ +Q T W +NP + D
Sbjct: 281 NITIAYKLVERRSGDIATCYSDPSLAAKELGWVAERGLEKMMQDTWNWQKNNPKGYRD 338
>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
SV=1
Length = 314
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 157/317 (49%), Gaps = 19/317 (5%)
Query: 11 LITGAAGFIASHVCNRLIGNYPEYKIVVLDKL--DYCSNLKNLNPSRLSPNFKFIKGDVA 68
L+TGAAGFI S + +RL+ + + +V LD +NL++L + F++ D+
Sbjct: 4 LVTGAAGFIGSTLVDRLLAD--GHSVVGLDNFATGRATNLEHLADNSA---HVFVEADIV 58
Query: 69 SADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKITGQIKRF 128
+ADL H IL + + + H AAQ V S + N+ GT L EA + TG +++
Sbjct: 59 TADL-HAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTG-VRKI 116
Query: 129 IHVSTD-EVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRG 187
+H S+ +YG E E + P +PY+A K E+ + + YGL
Sbjct: 117 VHTSSGGSIYGTPPE---YPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAP 173
Query: 188 NNVYGPNQFPEK---LIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGE 244
NVYGP Q P ++ F + GKP + GDG+N R Y++ +DV +AF +
Sbjct: 174 ANVYGPRQDPHGEAGVVAIFAQALLSGKPTRVFGDGTNTRDYVFVDDVVDAFVRVSADVG 233
Query: 245 VGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQ-LGW 303
G +NIGT KE + + + PD +F R + +R LD+ ++ LGW
Sbjct: 234 GGLRFNIGTGKETSDRQLHSAVAAAVG-GPDDP-EFHPPRLGDLKRSCLDIGLAERVLGW 291
Query: 304 YERVTWEEGLQKTMKWY 320
++ +G+++T++++
Sbjct: 292 RPQIELADGVRRTVEYF 308
>sp|Q8H0B2|ARAE3_ORYSJ Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp.
japonica GN=UEL-3 PE=2 SV=1
Length = 406
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 162/356 (45%), Gaps = 52/356 (14%)
Query: 9 NILITGAAGFIASHVCNRLIGNYPEYKIVVLDKLDY-----CSNLKNL--NPSRLSPNFK 61
++L+TG AG+I SH RL+ + Y++ ++D L L+ L P RL +
Sbjct: 65 HVLVTGGAGYIGSHASLRLLKD--NYRVTIVDNLSRGNMGAVKVLQELFPQPGRL----Q 118
Query: 62 FIKGDVASADLVHFILLTEKIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKI 121
FI D+ V+ I D +MHFAA +V S + N T ++LEA
Sbjct: 119 FIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMAS 178
Query: 122 TGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAY--GRSYG 179
G +K I+ ST YGE ++ +V E ++ LP NPY K AE +++ + GR
Sbjct: 179 HG-VKTLIYSSTCATYGEPEKMPIV---ETTRQLPINPYGKAKKMAEDIILDFTKGRK-D 233
Query: 180 LPVITTRGNNVYGPNQFPEKLI---PKFIL--------------------LAMKGKPLPI 216
+ V+ R NV G + PE + P+ L L +KG P
Sbjct: 234 MAVMILRYFNVIGSD--PEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPT 291
Query: 217 HGDGSNVRSYLYCEDVAEAFDTILHKGEVGHV--YNIGTKKERRVIDVATDICKLFSLNP 274
DG+ +R Y+ D+ +A L+K E V YN+GT + R V + D CK +
Sbjct: 292 T-DGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGRSVKEF-VDACKK-ATGV 348
Query: 275 DTQIKFVENRPFNDQRYFLDVQKLK-QLGWYERVT-WEEGLQKTMKWYISNPDWWG 328
+ +I+++ RP + + D K+ +L W + T +E L +W S+P +G
Sbjct: 349 NIKIEYLSRRPGDYAEVYSDPTKINTELNWTAQYTDLKESLSVAWRWQKSHPRGYG 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,963,086
Number of Sequences: 539616
Number of extensions: 11471511
Number of successful extensions: 29631
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 28788
Number of HSP's gapped (non-prelim): 616
length of query: 676
length of database: 191,569,459
effective HSP length: 124
effective length of query: 552
effective length of database: 124,657,075
effective search space: 68810705400
effective search space used: 68810705400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)