Query 005820
Match_columns 676
No_of_seqs 374 out of 2814
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:13:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1154 Dxs Deoxyxylulose-5-ph 100.0 7E-144 2E-148 1172.5 57.1 578 74-666 2-582 (627)
2 PLN02225 1-deoxy-D-xylulose-5- 100.0 4E-138 8E-143 1173.3 61.5 592 57-672 59-653 (701)
3 PLN02234 1-deoxy-D-xylulose-5- 100.0 7E-138 2E-142 1171.4 59.6 618 1-673 13-631 (641)
4 PLN02582 1-deoxy-D-xylulose-5- 100.0 2E-132 5E-137 1136.2 65.1 607 61-667 18-624 (677)
5 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 2E-121 5E-126 1049.1 62.9 579 77-671 1-580 (617)
6 PRK12571 1-deoxy-D-xylulose-5- 100.0 1E-119 3E-124 1037.8 63.3 586 71-671 3-591 (641)
7 PRK12315 1-deoxy-D-xylulose-5- 100.0 2E-112 3E-117 971.2 57.5 537 76-664 2-540 (581)
8 PRK05444 1-deoxy-D-xylulose-5- 100.0 3E-107 6E-112 931.7 56.3 540 71-670 1-543 (580)
9 KOG0523 Transketolase [Carbohy 100.0 1.6E-95 3E-100 788.7 37.3 560 74-668 2-586 (632)
10 PTZ00089 transketolase; Provis 100.0 1.3E-91 2.7E-96 809.3 49.7 499 93-654 5-619 (661)
11 PRK12753 transketolase; Review 100.0 4.7E-91 1E-95 803.0 50.3 499 95-653 5-620 (663)
12 PLN02790 transketolase 100.0 8.7E-91 1.9E-95 801.5 51.9 494 101-655 1-613 (654)
13 PRK05899 transketolase; Review 100.0 6.1E-88 1.3E-92 778.7 50.0 503 89-653 3-581 (624)
14 PRK12754 transketolase; Review 100.0 3.9E-87 8.4E-92 765.8 51.0 503 95-656 5-623 (663)
15 TIGR00232 tktlase_bact transke 100.0 4.1E-87 8.8E-92 770.9 50.1 497 96-653 2-610 (653)
16 COG0021 TktA Transketolase [Ca 100.0 2.6E-81 5.7E-86 686.0 47.4 506 91-657 3-623 (663)
17 TIGR03186 AKGDH_not_PDH alpha- 100.0 2.2E-80 4.8E-85 715.7 51.6 556 36-663 30-817 (889)
18 PRK09405 aceE pyruvate dehydro 100.0 9.8E-78 2.1E-82 693.8 50.6 554 37-663 37-820 (891)
19 PRK13012 2-oxoacid dehydrogena 100.0 7.4E-77 1.6E-81 689.5 51.2 526 37-632 45-779 (896)
20 PF13292 DXP_synthase_N: 1-deo 100.0 9.3E-75 2E-79 581.7 12.8 270 77-362 1-270 (270)
21 COG3958 Transketolase, C-termi 100.0 1.4E-60 3.1E-65 480.1 29.6 264 398-665 6-272 (312)
22 TIGR00759 aceE pyruvate dehydr 100.0 2.6E-58 5.7E-63 525.7 42.1 525 36-630 30-766 (885)
23 CHL00144 odpB pyruvate dehydro 100.0 2.5E-53 5.4E-58 452.8 31.0 268 399-672 4-290 (327)
24 PLN02683 pyruvate dehydrogenas 100.0 1.8E-52 3.8E-57 450.4 32.8 273 397-672 25-317 (356)
25 PRK09212 pyruvate dehydrogenas 100.0 5.1E-52 1.1E-56 443.4 32.0 269 398-671 3-289 (327)
26 PRK11892 pyruvate dehydrogenas 100.0 2.3E-51 5E-56 453.5 32.8 272 397-672 140-429 (464)
27 PTZ00182 3-methyl-2-oxobutanat 100.0 3.5E-51 7.5E-56 440.3 30.9 272 396-671 32-321 (355)
28 COG0022 AcoB Pyruvate/2-oxoglu 100.0 4.1E-50 8.8E-55 407.2 26.0 270 399-673 2-290 (324)
29 PRK05261 putative phosphoketol 100.0 2.5E-46 5.4E-51 428.5 44.3 464 113-643 49-683 (785)
30 COG3959 Transketolase, N-termi 100.0 1.2E-46 2.7E-51 365.8 22.2 222 89-365 5-243 (243)
31 PRK09404 sucA 2-oxoglutarate d 100.0 7.7E-44 1.7E-48 416.8 42.8 510 88-662 185-884 (924)
32 COG2609 AceE Pyruvate dehydrog 100.0 1.3E-42 2.8E-47 379.5 36.6 536 72-628 55-767 (887)
33 cd02007 TPP_DXS Thiamine pyrop 100.0 8.2E-44 1.8E-48 353.9 19.9 195 113-368 1-195 (195)
34 PF00456 Transketolase_N: Tran 100.0 2.8E-44 6.1E-49 382.1 14.4 233 95-383 2-262 (332)
35 KOG0524 Pyruvate dehydrogenase 100.0 3.9E-43 8.5E-48 347.0 21.2 273 397-673 33-326 (359)
36 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.5E-40 3.2E-45 387.3 37.7 418 185-662 313-890 (929)
37 cd02017 TPP_E1_EcPDC_like Thia 100.0 4.9E-42 1.1E-46 365.3 23.2 230 95-380 5-334 (386)
38 cd02012 TPP_TK Thiamine pyroph 100.0 2E-39 4.4E-44 336.0 22.2 227 100-382 2-245 (255)
39 KOG0525 Branched chain alpha-k 100.0 1.6E-35 3.5E-40 288.9 16.0 270 397-671 39-328 (362)
40 cd07033 TPP_PYR_DXS_TK_like Py 100.0 1.4E-34 3E-39 278.1 19.1 154 404-558 2-156 (156)
41 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 7.6E-32 1.7E-36 261.0 17.1 152 404-558 2-167 (167)
42 PF02779 Transket_pyr: Transke 100.0 9E-32 1.9E-36 264.2 12.7 163 398-561 2-175 (178)
43 smart00861 Transket_pyr Transk 100.0 3.1E-28 6.8E-33 236.8 18.9 159 400-559 1-167 (168)
44 COG1071 AcoA Pyruvate/2-oxoglu 99.9 4.9E-25 1.1E-29 233.3 20.8 233 88-379 23-276 (358)
45 COG3957 Phosphoketolase [Carbo 99.9 1.8E-23 3.9E-28 231.1 28.1 470 113-642 60-692 (793)
46 CHL00149 odpA pyruvate dehydro 99.9 8.1E-24 1.8E-28 227.2 22.2 227 83-371 11-267 (341)
47 PLN02269 Pyruvate dehydrogenas 99.9 1.9E-23 4.2E-28 225.1 22.2 197 113-371 59-267 (362)
48 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 4.7E-23 1E-27 217.9 21.3 201 111-370 23-235 (293)
49 PLN02374 pyruvate dehydrogenas 99.9 1.2E-22 2.6E-27 223.1 19.9 197 113-371 115-333 (433)
50 PF00676 E1_dh: Dehydrogenase 99.9 1E-22 2.2E-27 215.5 15.8 205 111-372 21-234 (300)
51 TIGR03182 PDH_E1_alph_y pyruva 99.9 4.2E-22 9E-27 212.4 19.9 201 112-371 30-242 (315)
52 TIGR03181 PDH_E1_alph_x pyruva 99.9 2.4E-21 5.1E-26 208.7 22.5 195 114-371 53-254 (341)
53 KOG0225 Pyruvate dehydrogenase 99.8 1.8E-20 4E-25 191.6 12.9 200 112-372 87-296 (394)
54 PRK07119 2-ketoisovalerate fer 99.8 7.2E-19 1.6E-23 190.0 23.7 223 433-661 41-320 (352)
55 PRK08659 2-oxoglutarate ferred 99.8 2.3E-18 4.9E-23 187.5 23.5 219 438-661 46-347 (376)
56 cd02011 TPP_PK Thiamine pyroph 99.8 8.5E-19 1.8E-23 176.1 15.2 168 144-369 2-209 (227)
57 PRK09622 porA pyruvate flavodo 99.8 5.6E-17 1.2E-21 178.6 26.7 217 441-662 57-344 (407)
58 PRK09627 oorA 2-oxoglutarate-a 99.8 3.5E-17 7.5E-22 177.9 22.6 218 439-662 46-349 (375)
59 cd02016 TPP_E1_OGDC_like Thiam 99.8 4.3E-18 9.4E-23 175.1 13.8 204 113-371 12-254 (265)
60 TIGR03336 IOR_alpha indolepyru 99.8 9.7E-17 2.1E-21 185.3 25.6 214 441-664 46-304 (595)
61 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 4.3E-17 9.3E-22 186.5 22.4 217 441-660 237-537 (562)
62 PRK08366 vorA 2-ketoisovalerat 99.7 3.3E-16 7.2E-21 170.9 26.9 203 447-653 55-327 (390)
63 PRK08367 porA pyruvate ferredo 99.7 1.8E-15 3.9E-20 165.5 25.5 213 447-662 56-341 (394)
64 PRK12270 kgd alpha-ketoglutara 99.7 8.8E-15 1.9E-19 167.8 30.6 412 188-663 620-1188(1228)
65 PF02780 Transketolase_C: Tran 99.7 1.1E-17 2.3E-22 154.7 0.8 89 578-666 1-90 (124)
66 cd00568 TPP_enzymes Thiamine p 99.6 3.6E-15 7.9E-20 144.2 14.0 158 135-362 11-168 (168)
67 KOG1182 Branched chain alpha-k 99.6 4.1E-15 8.8E-20 151.1 9.5 130 186-370 192-325 (432)
68 cd02004 TPP_BZL_OCoD_HPCL Thia 99.5 9.6E-14 2.1E-18 135.6 10.5 126 185-362 46-171 (172)
69 PRK06163 hypothetical protein; 99.5 6.2E-13 1.3E-17 133.1 15.5 123 185-369 55-179 (202)
70 cd02013 TPP_Xsc_like Thiamine 99.5 2.3E-13 4.9E-18 135.9 12.1 132 185-367 51-183 (196)
71 cd03371 TPP_PpyrDC Thiamine py 99.5 2.6E-13 5.6E-18 134.5 12.2 122 184-367 45-167 (188)
72 cd02008 TPP_IOR_alpha Thiamine 99.5 3.9E-13 8.5E-18 132.1 12.4 127 185-362 49-176 (178)
73 cd02015 TPP_AHAS Thiamine pyro 99.5 3.1E-13 6.7E-18 133.7 11.7 128 185-366 48-177 (186)
74 cd02003 TPP_IolD Thiamine pyro 99.4 7.3E-13 1.6E-17 133.2 12.0 141 185-367 46-188 (205)
75 cd02006 TPP_Gcl Thiamine pyrop 99.4 1.1E-12 2.5E-17 131.5 12.3 141 185-366 55-197 (202)
76 cd03372 TPP_ComE Thiamine pyro 99.4 1.4E-12 3.1E-17 128.3 12.6 119 185-367 40-159 (179)
77 cd02002 TPP_BFDC Thiamine pyro 99.4 1.3E-12 2.8E-17 128.2 11.7 129 185-362 48-178 (178)
78 cd02001 TPP_ComE_PpyrDC Thiami 99.4 1.5E-12 3.3E-17 125.3 11.6 117 185-365 40-157 (157)
79 cd02010 TPP_ALS Thiamine pyrop 99.4 1.4E-12 3.1E-17 128.0 11.4 127 184-364 45-171 (177)
80 cd02014 TPP_POX Thiamine pyrop 99.4 1.9E-12 4.1E-17 127.3 11.4 127 185-365 49-175 (178)
81 TIGR02176 pyruv_ox_red pyruvat 99.4 5.5E-11 1.2E-15 145.7 24.4 218 442-663 53-347 (1165)
82 PF02775 TPP_enzyme_C: Thiamin 99.4 9.2E-13 2E-17 126.1 7.0 129 184-360 25-153 (153)
83 TIGR03846 sulfopy_beta sulfopy 99.4 5.4E-12 1.2E-16 124.3 11.9 118 186-366 41-159 (181)
84 PF09364 XFP_N: XFP N-terminal 99.4 1E-11 2.2E-16 130.7 14.5 212 113-383 47-306 (379)
85 cd02009 TPP_SHCHC_synthase Thi 99.3 1.7E-12 3.7E-17 127.3 7.6 127 185-363 49-175 (175)
86 KOG0451 Predicted 2-oxoglutara 99.3 1.6E-10 3.5E-15 125.3 20.9 453 139-657 212-870 (913)
87 COG0674 PorA Pyruvate:ferredox 99.3 7.1E-10 1.5E-14 120.6 25.7 217 435-656 42-328 (365)
88 COG4231 Indolepyruvate ferredo 99.3 4E-10 8.6E-15 125.8 24.0 215 441-665 58-322 (640)
89 cd06586 TPP_enzyme_PYR Pyrimid 99.3 4.9E-11 1.1E-15 113.6 14.1 126 431-558 25-154 (154)
90 cd02005 TPP_PDC_IPDC Thiamine 99.3 1.6E-11 3.5E-16 121.2 11.0 125 185-365 48-176 (183)
91 COG0028 IlvB Thiamine pyrophos 99.3 9.8E-12 2.1E-16 142.0 10.1 128 185-365 406-533 (550)
92 TIGR03297 Ppyr-DeCO2ase phosph 99.3 2.3E-11 5E-16 131.9 12.3 168 120-367 172-340 (361)
93 PRK06112 acetolactate synthase 99.3 3.5E-11 7.6E-16 139.2 14.6 129 185-366 435-563 (578)
94 PRK08266 hypothetical protein; 99.3 2.4E-11 5.2E-16 139.6 12.1 129 186-367 401-529 (542)
95 PRK07064 hypothetical protein; 99.2 2.3E-11 4.9E-16 139.8 11.0 129 187-368 405-533 (544)
96 TIGR02418 acolac_catab acetola 99.2 3.6E-11 7.9E-16 138.0 12.4 128 185-366 406-533 (539)
97 PRK06546 pyruvate dehydrogenas 99.2 3.3E-11 7.2E-16 139.3 11.7 128 185-366 406-533 (578)
98 PRK08199 thiamine pyrophosphat 99.2 3.8E-11 8.2E-16 138.3 11.9 128 185-365 413-540 (557)
99 PRK07524 hypothetical protein; 99.2 4.1E-11 8.9E-16 137.4 11.9 129 185-367 405-533 (535)
100 cd03376 TPP_PFOR_porB_like Thi 99.2 3.3E-11 7.2E-16 123.5 10.0 139 186-363 61-200 (235)
101 PRK06965 acetolactate synthase 99.2 4.2E-11 9.1E-16 138.7 11.9 129 185-366 435-565 (587)
102 cd03375 TPP_OGFOR Thiamine pyr 99.2 3.7E-11 8E-16 119.7 9.8 133 187-363 51-184 (193)
103 PRK09124 pyruvate dehydrogenas 99.2 3.8E-11 8.3E-16 138.8 11.2 128 185-366 406-533 (574)
104 PRK05858 hypothetical protein; 99.2 6.5E-11 1.4E-15 136.0 12.6 128 185-366 405-533 (542)
105 PRK06457 pyruvate dehydrogenas 99.2 4.5E-11 9.9E-16 137.4 11.3 127 185-364 394-520 (549)
106 PRK08611 pyruvate oxidase; Pro 99.2 5.2E-11 1.1E-15 137.6 11.8 128 185-366 406-533 (576)
107 PRK09107 acetolactate synthase 99.2 6.1E-11 1.3E-15 137.5 12.0 128 185-365 428-556 (595)
108 PRK11864 2-ketoisovalerate fer 99.2 9.4E-11 2E-15 123.1 12.2 147 184-369 66-215 (300)
109 PRK06725 acetolactate synthase 99.2 6.6E-11 1.4E-15 136.6 12.0 128 185-365 420-547 (570)
110 PLN02470 acetolactate synthase 99.2 6.5E-11 1.4E-15 137.2 12.0 132 185-366 424-560 (585)
111 PRK08978 acetolactate synthase 99.2 6.6E-11 1.4E-15 136.1 11.9 128 185-366 399-528 (548)
112 PRK08322 acetolactate synthase 99.2 7.8E-11 1.7E-15 135.5 12.4 129 185-367 404-532 (547)
113 PRK07979 acetolactate synthase 99.2 8E-11 1.7E-15 136.1 12.1 130 185-365 419-550 (574)
114 PRK07418 acetolactate synthase 99.2 7E-11 1.5E-15 137.6 11.6 128 185-366 432-562 (616)
115 PRK12474 hypothetical protein; 99.2 1.4E-10 3E-15 132.6 13.4 129 186-362 388-518 (518)
116 PRK06456 acetolactate synthase 99.2 8.8E-11 1.9E-15 135.8 11.9 129 185-366 419-548 (572)
117 PRK08979 acetolactate synthase 99.2 8.9E-11 1.9E-15 135.7 11.8 128 185-365 419-548 (572)
118 TIGR01504 glyox_carbo_lig glyo 99.2 7.9E-11 1.7E-15 136.4 11.4 139 185-366 416-558 (588)
119 PRK06466 acetolactate synthase 99.2 1E-10 2.2E-15 135.2 12.1 129 185-366 421-551 (574)
120 CHL00099 ilvB acetohydroxyacid 99.2 1E-10 2.2E-15 135.6 11.8 130 185-365 428-557 (585)
121 PRK06882 acetolactate synthase 99.2 1.1E-10 2.4E-15 134.9 12.0 130 185-366 419-549 (574)
122 PRK06048 acetolactate synthase 99.2 1.1E-10 2.5E-15 134.5 12.0 128 185-366 412-541 (561)
123 PRK06154 hypothetical protein; 99.2 6.3E-11 1.4E-15 136.6 9.9 129 185-366 429-558 (565)
124 PRK07710 acetolactate synthase 99.2 1.2E-10 2.6E-15 134.5 12.0 128 185-366 422-551 (571)
125 PRK08527 acetolactate synthase 99.2 1.3E-10 2.8E-15 134.1 11.9 128 185-366 412-541 (563)
126 PRK07092 benzoylformate decarb 99.2 1.2E-10 2.7E-15 133.3 11.5 125 186-363 406-530 (530)
127 TIGR03457 sulphoacet_xsc sulfo 99.2 1.4E-10 3E-15 134.2 12.1 131 185-367 428-561 (579)
128 PRK07586 hypothetical protein; 99.2 1.2E-10 2.5E-15 133.0 11.2 127 187-362 385-514 (514)
129 PRK08273 thiamine pyrophosphat 99.2 1.2E-10 2.7E-15 135.1 11.5 131 185-366 413-549 (597)
130 PRK08617 acetolactate synthase 99.2 1.1E-10 2.3E-15 134.5 10.7 128 185-367 412-540 (552)
131 TIGR02720 pyruv_oxi_spxB pyruv 99.2 1.3E-10 2.9E-15 134.2 11.5 129 185-365 406-534 (575)
132 PRK07789 acetolactate synthase 99.1 1.2E-10 2.6E-15 135.6 11.1 133 185-365 445-578 (612)
133 PRK08155 acetolactate synthase 99.1 1.4E-10 2.9E-15 134.0 11.0 129 185-366 417-546 (564)
134 PRK07282 acetolactate synthase 99.1 1.4E-10 3E-15 133.9 10.8 127 185-365 416-543 (566)
135 PRK11269 glyoxylate carboligas 99.1 1.5E-10 3.3E-15 134.2 11.1 141 185-366 417-559 (591)
136 TIGR00118 acolac_lg acetolacta 99.1 2.1E-10 4.5E-15 132.3 11.3 128 185-366 410-539 (558)
137 PRK06276 acetolactate synthase 99.1 3.2E-10 7E-15 131.4 11.5 126 185-364 417-544 (586)
138 KOG0450 2-oxoglutarate dehydro 99.1 1.1E-08 2.4E-13 113.8 22.6 262 408-672 658-982 (1017)
139 PRK08327 acetolactate synthase 99.1 2.1E-10 4.6E-15 132.4 9.8 136 185-363 428-567 (569)
140 TIGR03393 indolpyr_decarb indo 99.1 9.3E-11 2E-15 134.6 6.3 123 185-364 402-528 (539)
141 PRK09259 putative oxalyl-CoA d 99.1 8E-10 1.7E-14 127.7 13.7 128 185-367 422-550 (569)
142 PRK07525 sulfoacetaldehyde ace 99.1 6.3E-10 1.4E-14 129.0 12.3 131 185-367 433-566 (588)
143 PLN02573 pyruvate decarboxylas 99.1 4.4E-10 9.5E-15 130.0 10.5 123 185-364 426-553 (578)
144 TIGR03254 oxalate_oxc oxalyl-C 99.0 8.8E-10 1.9E-14 127.0 11.8 126 185-366 415-541 (554)
145 PRK07449 2-succinyl-5-enolpyru 99.0 8.5E-10 1.8E-14 127.5 11.5 128 185-364 423-550 (568)
146 PRK05778 2-oxoglutarate ferred 99.0 8.1E-10 1.8E-14 116.8 10.0 133 187-363 70-203 (301)
147 cd02018 TPP_PFOR Thiamine pyro 99.0 9.5E-10 2.1E-14 113.0 9.2 140 185-363 62-203 (237)
148 PRK11869 2-oxoacid ferredoxin 99.0 1E-09 2.2E-14 114.7 9.2 134 187-363 60-193 (280)
149 PRK11866 2-oxoacid ferredoxin 99.0 2.3E-09 5E-14 112.1 11.3 134 186-363 58-192 (279)
150 PRK13030 2-oxoacid ferredoxin 99.0 2.3E-08 4.9E-13 121.4 20.2 245 399-649 20-342 (1159)
151 TIGR03394 indol_phenyl_DC indo 99.0 2.2E-09 4.7E-14 123.1 10.9 123 185-365 401-523 (535)
152 PRK09628 oorB 2-oxoglutarate-a 99.0 2E-09 4.3E-14 112.7 9.1 135 187-364 68-202 (277)
153 PRK11867 2-oxoglutarate ferred 98.9 5.1E-09 1.1E-13 110.3 10.7 134 187-364 69-203 (286)
154 PRK09193 indolepyruvate ferred 98.9 4.2E-08 9.1E-13 118.7 19.8 239 400-648 29-349 (1165)
155 PRK11865 pyruvate ferredoxin o 98.9 8.5E-09 1.8E-13 108.5 12.2 153 183-370 65-220 (299)
156 TIGR02177 PorB_KorB 2-oxoacid: 98.9 6.7E-09 1.5E-13 109.0 10.2 134 187-363 53-186 (287)
157 COG0567 SucA 2-oxoglutarate de 98.9 8.4E-08 1.8E-12 111.5 19.6 406 186-653 297-857 (906)
158 TIGR03336 IOR_alpha indolepyru 98.8 1.4E-08 3E-13 117.9 10.0 127 186-362 402-529 (595)
159 COG3961 Pyruvate decarboxylase 98.7 1.8E-08 3.9E-13 110.4 8.0 125 186-364 410-536 (557)
160 PRK13029 2-oxoacid ferredoxin 98.7 1.7E-07 3.7E-12 113.4 17.1 213 441-662 85-365 (1186)
161 PLN02980 2-oxoglutarate decarb 98.7 5.9E-08 1.3E-12 124.0 11.2 132 185-366 757-892 (1655)
162 PF03894 XFP: D-xylulose 5-pho 98.6 1.1E-06 2.5E-11 84.3 14.0 144 403-546 2-178 (179)
163 PF01855 POR_N: Pyruvate flavo 98.5 4.3E-07 9.3E-12 92.9 9.6 114 443-559 38-155 (230)
164 KOG4166 Thiamine pyrophosphate 98.4 9.2E-07 2E-11 94.3 9.8 136 185-373 522-657 (675)
165 COG3962 Acetolactate synthase 98.4 1.1E-06 2.4E-11 94.9 9.8 136 180-364 437-576 (617)
166 KOG1184 Thiamine pyrophosphate 98.4 7.3E-07 1.6E-11 97.6 8.0 67 186-258 414-480 (561)
167 KOG1185 Thiamine pyrophosphate 98.3 1E-05 2.3E-10 88.1 14.6 260 34-366 285-563 (571)
168 COG1013 PorB Pyruvate:ferredox 97.9 6.1E-05 1.3E-09 79.7 9.8 131 190-363 73-204 (294)
169 COG4231 Indolepyruvate ferredo 97.8 6.7E-05 1.4E-09 84.8 9.7 124 188-362 429-553 (640)
170 cd07034 TPP_PYR_PFOR_IOR-alpha 97.8 0.0011 2.3E-08 63.8 16.0 115 439-557 40-159 (160)
171 COG3960 Glyoxylate carboligase 97.5 0.00012 2.6E-09 76.3 5.9 135 186-364 418-557 (592)
172 TIGR03297 Ppyr-DeCO2ase phosph 97.3 0.0029 6.2E-08 69.2 13.1 125 435-561 20-155 (361)
173 cd07035 TPP_PYR_POX_like Pyrim 97.3 0.0055 1.2E-07 58.5 13.6 115 441-558 35-155 (155)
174 KOG0523 Transketolase [Carbohy 97.1 0.00051 1.1E-08 77.1 5.4 59 320-382 200-258 (632)
175 COG1165 MenD 2-succinyl-6-hydr 96.9 0.019 4E-07 64.7 14.8 121 192-368 427-551 (566)
176 cd03377 TPP_PFOR_PNO Thiamine 96.9 0.0035 7.6E-08 67.8 8.8 115 209-363 151-267 (365)
177 PF02776 TPP_enzyme_N: Thiamin 96.6 0.04 8.7E-07 53.7 13.4 124 433-559 32-162 (172)
178 PRK13030 2-oxoacid ferredoxin 96.5 0.0081 1.7E-07 74.1 9.4 60 186-251 467-527 (1159)
179 TIGR03845 sulfopyru_alph sulfo 96.5 0.12 2.6E-06 49.9 15.3 110 447-559 40-155 (157)
180 PRK09193 indolepyruvate ferred 96.3 0.012 2.7E-07 72.3 9.5 60 186-251 480-540 (1165)
181 PRK13029 2-oxoacid ferredoxin 96.0 0.029 6.4E-07 69.1 10.1 59 187-251 495-554 (1186)
182 cd07039 TPP_PYR_POX Pyrimidine 95.5 0.64 1.4E-05 45.1 15.5 116 441-559 39-159 (164)
183 PRK07586 hypothetical protein; 95.4 1.9 4.1E-05 49.5 22.0 203 441-646 40-271 (514)
184 PRK07524 hypothetical protein; 95.3 1.4 3.1E-05 50.8 20.5 116 441-559 40-164 (535)
185 cd02001 TPP_ComE_PpyrDC Thiami 95.2 0.27 5.8E-06 47.3 11.7 144 404-556 3-152 (157)
186 PRK08199 thiamine pyrophosphat 95.1 1.9 4.1E-05 50.1 20.7 114 441-559 47-168 (557)
187 cd02004 TPP_BZL_OCoD_HPCL Thia 95.0 0.23 5E-06 48.3 11.0 117 435-556 33-169 (172)
188 TIGR02176 pyruv_ox_red pyruvat 95.0 0.061 1.3E-06 67.3 8.4 114 210-363 952-1067(1165)
189 COG4032 Predicted thiamine-pyr 95.0 0.046 1E-06 50.9 5.4 110 448-558 49-163 (172)
190 cd07037 TPP_PYR_MenD Pyrimidin 94.5 0.71 1.5E-05 44.8 12.8 114 441-557 36-161 (162)
191 PRK12474 hypothetical protein; 94.5 6.4 0.00014 45.3 22.9 200 441-646 44-275 (518)
192 TIGR02418 acolac_catab acetola 94.2 0.76 1.7E-05 53.1 14.4 116 441-559 37-158 (539)
193 cd02014 TPP_POX Thiamine pyrop 94.1 1.1 2.5E-05 43.7 13.5 118 434-556 35-170 (178)
194 cd02009 TPP_SHCHC_synthase Thi 93.5 1.2 2.5E-05 43.6 12.4 114 438-556 39-172 (175)
195 PRK07979 acetolactate synthase 93.5 1.3 2.8E-05 51.7 14.8 115 441-560 43-165 (574)
196 cd07038 TPP_PYR_PDC_IPDC_like 93.4 0.87 1.9E-05 44.0 11.2 113 442-558 37-162 (162)
197 PRK06965 acetolactate synthase 93.2 2.1 4.6E-05 50.0 16.0 114 441-559 60-181 (587)
198 TIGR03457 sulphoacet_xsc sulfo 93.2 1.4 3E-05 51.5 14.3 117 441-560 40-161 (579)
199 PRK07710 acetolactate synthase 93.1 1.8 3.8E-05 50.5 15.0 116 439-559 52-175 (571)
200 cd02015 TPP_AHAS Thiamine pyro 92.9 1.3 2.9E-05 43.6 11.7 118 435-556 35-171 (186)
201 PRK07282 acetolactate synthase 92.9 1.9 4E-05 50.3 14.8 114 441-559 49-170 (566)
202 PRK05858 hypothetical protein; 92.8 2.5 5.4E-05 48.9 15.7 117 440-559 42-164 (542)
203 PRK07525 sulfoacetaldehyde ace 92.8 0.96 2.1E-05 52.9 12.4 117 441-560 44-165 (588)
204 PRK07064 hypothetical protein; 92.8 2.7 5.8E-05 48.6 15.9 116 441-559 42-166 (544)
205 cd02010 TPP_ALS Thiamine pyrop 92.7 2.3 5E-05 41.7 13.1 119 435-557 33-168 (177)
206 PRK08155 acetolactate synthase 92.5 2.1 4.6E-05 49.8 14.5 114 441-559 52-173 (564)
207 PRK06725 acetolactate synthase 92.4 2.8 6.1E-05 48.9 15.4 115 441-560 53-175 (570)
208 TIGR02177 PorB_KorB 2-oxoacid: 92.3 2.3 5E-05 45.1 13.3 144 402-556 13-183 (287)
209 PRK06466 acetolactate synthase 92.3 2.6 5.6E-05 49.1 15.0 116 441-559 43-164 (574)
210 TIGR03846 sulfopy_beta sulfopy 92.2 2.3 5E-05 41.9 12.4 143 403-557 2-154 (181)
211 TIGR00118 acolac_lg acetolacta 92.2 2.9 6.2E-05 48.6 15.1 116 441-559 40-161 (558)
212 PRK06163 hypothetical protein; 92.1 7 0.00015 39.3 15.9 115 438-557 48-171 (202)
213 PRK09107 acetolactate synthase 92.0 3.2 7E-05 48.7 15.3 146 406-560 14-172 (595)
214 PRK08322 acetolactate synthase 91.7 3.1 6.7E-05 48.1 14.8 114 441-559 39-160 (547)
215 PRK11866 2-oxoacid ferredoxin 91.6 3 6.6E-05 44.1 13.2 147 402-556 19-189 (279)
216 cd03376 TPP_PFOR_porB_like Thi 91.6 3.9 8.4E-05 42.1 13.8 89 465-556 80-197 (235)
217 PRK08979 acetolactate synthase 91.6 3.1 6.6E-05 48.6 14.6 114 441-559 43-164 (572)
218 TIGR02720 pyruv_oxi_spxB pyruv 91.5 3.9 8.4E-05 47.8 15.4 117 441-560 39-160 (575)
219 PRK08611 pyruvate oxidase; Pro 91.4 4.3 9.3E-05 47.4 15.5 114 441-559 44-164 (576)
220 PRK09124 pyruvate dehydrogenas 91.3 4.5 9.8E-05 47.1 15.6 114 441-559 42-162 (574)
221 TIGR01504 glyox_carbo_lig glyo 91.2 5.8 0.00013 46.4 16.4 115 441-560 42-165 (588)
222 PRK08527 acetolactate synthase 91.2 4.3 9.4E-05 47.2 15.3 114 441-559 42-163 (563)
223 PRK06882 acetolactate synthase 90.9 5.2 0.00011 46.6 15.6 116 441-559 43-164 (574)
224 PRK07789 acetolactate synthase 90.9 4.9 0.00011 47.3 15.4 114 441-559 70-191 (612)
225 PLN02573 pyruvate decarboxylas 90.8 4.3 9.3E-05 47.5 14.8 115 442-560 56-183 (578)
226 PRK11269 glyoxylate carboligas 90.8 5.1 0.00011 46.9 15.4 122 433-559 35-165 (591)
227 PRK08266 hypothetical protein; 90.7 4.9 0.00011 46.5 15.0 116 441-559 44-168 (542)
228 PRK08978 acetolactate synthase 90.6 4.6 0.0001 46.7 14.8 114 441-559 39-160 (548)
229 PRK07092 benzoylformate decarb 90.6 5.3 0.00012 46.1 15.1 115 441-559 49-171 (530)
230 PLN02470 acetolactate synthase 90.5 4 8.6E-05 47.8 14.2 114 441-559 52-173 (585)
231 PRK08273 thiamine pyrophosphat 90.5 3.2 6.9E-05 48.7 13.4 147 406-560 6-165 (597)
232 PRK06546 pyruvate dehydrogenas 90.3 4.8 0.0001 47.0 14.6 114 441-559 42-162 (578)
233 PRK08617 acetolactate synthase 90.2 2.2 4.8E-05 49.4 11.7 114 441-559 43-164 (552)
234 cd02003 TPP_IolD Thiamine pyro 90.0 1.4 3.1E-05 44.2 8.7 117 435-556 33-181 (205)
235 PRK09628 oorB 2-oxoglutarate-a 90.0 6 0.00013 41.8 13.6 144 405-557 31-199 (277)
236 PRK06457 pyruvate dehydrogenas 90.0 1.8 3.9E-05 50.2 10.6 114 441-559 40-160 (549)
237 cd02006 TPP_Gcl Thiamine pyrop 90.0 1.3 2.9E-05 44.3 8.4 120 434-556 41-191 (202)
238 cd03372 TPP_ComE Thiamine pyro 89.9 4.4 9.5E-05 39.8 11.9 140 404-556 3-152 (179)
239 COG0028 IlvB Thiamine pyrophos 89.8 7.1 0.00015 45.4 15.2 176 433-614 33-230 (550)
240 cd02013 TPP_Xsc_like Thiamine 89.7 1.8 3.8E-05 43.2 9.0 118 435-556 38-176 (196)
241 PRK06276 acetolactate synthase 89.6 2.9 6.3E-05 48.9 12.1 116 441-559 39-160 (586)
242 cd02018 TPP_PFOR Thiamine pyro 89.4 12 0.00027 38.4 15.2 116 439-556 51-200 (237)
243 PRK06456 acetolactate synthase 89.4 3 6.5E-05 48.6 11.9 113 442-559 45-165 (572)
244 PRK11864 2-ketoisovalerate fer 89.3 4.4 9.5E-05 43.3 12.0 103 452-556 73-204 (300)
245 PRK06112 acetolactate synthase 89.3 3.1 6.8E-05 48.5 12.0 116 441-559 50-171 (578)
246 cd02002 TPP_BFDC Thiamine pyro 88.8 2.1 4.7E-05 41.6 8.7 114 438-555 38-175 (178)
247 PF09363 XFP_C: XFP C-terminal 88.7 1.8 3.9E-05 43.2 8.0 58 586-643 34-104 (203)
248 PRK07418 acetolactate synthase 88.7 3.7 8E-05 48.4 12.1 114 441-559 61-182 (616)
249 PRK06048 acetolactate synthase 88.5 8.9 0.00019 44.6 15.0 115 440-559 45-167 (561)
250 PRK07449 2-succinyl-5-enolpyru 88.2 5.9 0.00013 46.1 13.3 115 441-559 48-174 (568)
251 PRK11867 2-oxoglutarate ferred 87.6 8.6 0.00019 40.9 12.9 145 401-556 28-199 (286)
252 TIGR03394 indol_phenyl_DC indo 87.5 10 0.00022 44.0 14.4 116 441-560 39-166 (535)
253 PRK08327 acetolactate synthase 87.3 12 0.00027 43.5 15.2 115 442-559 52-181 (569)
254 TIGR00173 menD 2-succinyl-5-en 87.2 8.2 0.00018 43.3 13.3 114 442-559 40-166 (432)
255 CHL00099 ilvB acetohydroxyacid 86.9 5.2 0.00011 46.8 11.9 114 441-559 52-173 (585)
256 cd01460 vWA_midasin VWA_Midasi 86.8 4.2 9.2E-05 42.7 9.9 62 187-248 135-205 (266)
257 TIGR03254 oxalate_oxc oxalyl-C 86.5 15 0.00032 42.7 15.2 116 441-559 41-164 (554)
258 PF02775 TPP_enzyme_C: Thiamin 86.1 5.3 0.00012 37.8 9.5 116 436-555 14-152 (153)
259 cd02005 TPP_PDC_IPDC Thiamine 85.8 8.8 0.00019 37.8 11.1 117 437-556 37-171 (183)
260 cd06586 TPP_enzyme_PYR Pyrimid 85.7 5 0.00011 37.6 9.1 49 192-248 47-96 (154)
261 PRK09259 putative oxalyl-CoA d 85.7 16 0.00034 42.6 15.0 116 441-559 48-171 (569)
262 cd00568 TPP_enzymes Thiamine p 85.2 3.9 8.4E-05 39.0 8.2 114 439-556 35-166 (168)
263 PRK11865 pyruvate ferredoxin o 84.9 15 0.00033 39.2 13.0 104 451-556 72-208 (299)
264 cd03371 TPP_PpyrDC Thiamine py 84.7 28 0.0006 34.5 14.1 112 439-556 40-160 (188)
265 COG1071 AcoA Pyruvate/2-oxoglu 83.6 6.5 0.00014 42.9 9.7 115 439-556 131-258 (358)
266 cd02008 TPP_IOR_alpha Thiamine 83.5 7.9 0.00017 37.8 9.6 98 455-556 58-174 (178)
267 cd02007 TPP_DXS Thiamine pyrop 83.4 10 0.00022 37.8 10.5 99 452-557 79-188 (195)
268 cd02012 TPP_TK Thiamine pyroph 82.4 17 0.00036 37.8 12.0 102 453-557 110-225 (255)
269 cd03028 GRX_PICOT_like Glutare 81.8 6.2 0.00014 34.0 7.2 75 586-666 7-89 (90)
270 PRK06154 hypothetical protein; 81.1 18 0.00038 42.3 12.9 119 434-556 415-552 (565)
271 PLN02980 2-oxoglutarate decarb 81.1 15 0.00033 48.4 13.4 114 441-558 340-466 (1655)
272 cd07033 TPP_PYR_DXS_TK_like Py 80.7 19 0.00042 34.3 11.0 48 193-248 52-100 (156)
273 PRK11869 2-oxoacid ferredoxin 80.4 8.3 0.00018 40.8 8.9 148 401-556 19-190 (280)
274 cd03375 TPP_OGFOR Thiamine pyr 80.1 14 0.0003 36.7 10.1 100 453-556 56-181 (193)
275 PRK05778 2-oxoglutarate ferred 79.7 11 0.00024 40.3 9.7 102 453-556 75-200 (301)
276 cd07036 TPP_PYR_E1-PDHc-beta_l 74.5 27 0.00059 33.9 10.1 35 321-360 130-165 (167)
277 PRK05444 1-deoxy-D-xylulose-5- 73.9 19 0.0004 42.2 10.3 101 453-557 122-240 (580)
278 TIGR00365 monothiol glutaredox 73.2 12 0.00025 32.9 6.5 78 586-666 11-93 (97)
279 cd03027 GRX_DEP Glutaredoxin ( 72.1 12 0.00026 30.6 6.0 66 588-655 2-68 (73)
280 TIGR03181 PDH_E1_alph_x pyruva 72.1 15 0.00032 40.1 8.4 101 453-556 131-243 (341)
281 TIGR03393 indolpyr_decarb indo 71.8 56 0.0012 37.8 13.6 112 440-557 394-525 (539)
282 PRK12315 1-deoxy-D-xylulose-5- 71.0 34 0.00075 40.1 11.6 109 444-557 110-241 (581)
283 PRK12571 1-deoxy-D-xylulose-5- 70.8 34 0.00073 40.6 11.5 58 184-249 364-423 (641)
284 TIGR00204 dxs 1-deoxy-D-xylulo 69.0 37 0.00079 40.2 11.3 50 192-249 364-414 (617)
285 cd02000 TPP_E1_PDC_ADC_BCADC T 68.4 21 0.00045 37.9 8.4 90 466-556 127-225 (293)
286 PF02779 Transket_pyr: Transke 67.1 66 0.0014 31.3 11.1 38 321-361 133-171 (178)
287 cd00860 ThrRS_anticodon ThrRS 66.8 30 0.00065 29.1 7.6 58 588-647 3-61 (91)
288 PLN02790 transketolase 66.5 31 0.00068 41.0 10.1 77 478-557 153-236 (654)
289 cd07035 TPP_PYR_POX_like Pyrim 65.7 30 0.00065 32.6 8.1 52 190-248 44-96 (155)
290 PLN02234 1-deoxy-D-xylulose-5- 64.4 43 0.00093 39.7 10.5 49 193-249 412-461 (641)
291 PF00676 E1_dh: Dehydrogenase 64.2 19 0.0004 38.5 7.0 102 454-556 107-222 (300)
292 cd07034 TPP_PYR_PFOR_IOR-alpha 63.5 52 0.0011 31.1 9.4 53 188-248 49-101 (160)
293 cd07037 TPP_PYR_MenD Pyrimidin 63.5 35 0.00076 33.0 8.2 53 188-246 43-95 (162)
294 PTZ00089 transketolase; Provis 63.1 65 0.0014 38.4 11.9 77 478-557 164-247 (661)
295 COG0075 Serine-pyruvate aminot 62.3 58 0.0013 36.1 10.5 82 581-665 75-162 (383)
296 KOG0225 Pyruvate dehydrogenase 61.1 37 0.00081 36.6 8.3 87 467-557 189-285 (394)
297 COG3962 Acetolactate synthase 60.3 64 0.0014 36.4 10.2 206 399-615 7-260 (617)
298 CHL00149 odpA pyruvate dehydro 59.8 39 0.00085 36.8 8.6 88 465-556 157-256 (341)
299 TIGR02190 GlrX-dom Glutaredoxi 59.1 38 0.00083 28.2 6.7 71 585-660 6-78 (79)
300 PLN02582 1-deoxy-D-xylulose-5- 59.1 74 0.0016 38.1 11.3 58 184-249 401-460 (677)
301 PLN02683 pyruvate dehydrogenas 59.0 68 0.0015 35.2 10.4 35 321-360 160-195 (356)
302 PRK05899 transketolase; Review 58.9 1.1E+02 0.0023 36.4 12.7 88 466-557 151-246 (624)
303 COG3961 Pyruvate decarboxylase 58.8 53 0.0012 37.5 9.4 137 417-558 20-169 (557)
304 PF03129 HGTP_anticodon: Antic 58.4 33 0.00072 29.3 6.4 57 588-646 1-61 (94)
305 KOG1185 Thiamine pyrophosphate 57.8 50 0.0011 37.4 8.9 120 434-555 414-556 (571)
306 cd03418 GRX_GRXb_1_3_like Glut 57.6 35 0.00076 27.6 6.2 66 589-656 2-69 (75)
307 cd01481 vWA_collagen_alpha3-VI 56.3 32 0.0007 33.1 6.6 55 589-646 110-164 (165)
308 cd00858 GlyRS_anticodon GlyRS 56.0 49 0.0011 30.1 7.4 58 587-647 27-87 (121)
309 TIGR03845 sulfopyru_alph sulfo 55.8 1.4E+02 0.0031 28.6 10.9 51 190-248 44-95 (157)
310 COG0426 FpaA Uncharacterized f 54.4 50 0.0011 36.6 8.2 83 593-675 256-372 (388)
311 cd01080 NAD_bind_m-THF_DH_Cycl 54.1 34 0.00074 33.4 6.3 51 585-643 43-93 (168)
312 PF04273 DUF442: Putative phos 53.4 20 0.00043 32.5 4.2 42 321-363 53-96 (110)
313 PRK10638 glutaredoxin 3; Provi 52.9 42 0.00091 28.1 6.0 65 588-654 3-68 (83)
314 cd03033 ArsC_15kD Arsenate Red 52.8 31 0.00067 31.3 5.4 49 588-638 1-49 (113)
315 KOG1184 Thiamine pyrophosphate 51.7 55 0.0012 37.3 8.1 149 405-559 6-170 (561)
316 TIGR02189 GlrX-like_plant Glut 51.3 76 0.0016 27.9 7.6 67 587-655 8-78 (99)
317 PRK12754 transketolase; Review 51.1 1.2E+02 0.0025 36.3 11.3 77 478-557 162-244 (663)
318 TIGR00232 tktlase_bact transke 50.3 1E+02 0.0022 36.8 10.6 49 193-248 409-457 (653)
319 cd07039 TPP_PYR_POX Pyrimidine 49.1 98 0.0021 29.8 8.6 49 193-247 51-99 (164)
320 cd00859 HisRS_anticodon HisRS 48.1 75 0.0016 26.1 6.9 55 588-645 3-59 (91)
321 PLN02374 pyruvate dehydrogenas 47.5 81 0.0018 35.6 8.8 90 465-556 223-322 (433)
322 cd00738 HGTP_anticodon HGTP an 47.4 75 0.0016 26.7 6.9 58 588-647 3-64 (94)
323 cd06063 H2MP_Cyano-H2up This g 46.8 69 0.0015 30.2 7.0 55 589-647 1-61 (146)
324 KOG1145 Mitochondrial translat 46.7 2.5E+02 0.0054 32.7 12.2 41 206-247 223-263 (683)
325 PF03358 FMN_red: NADPH-depend 46.5 40 0.00088 31.5 5.5 65 596-660 15-93 (152)
326 cd00861 ProRS_anticodon_short 45.8 88 0.0019 26.4 7.1 58 588-647 3-64 (94)
327 PF00456 Transketolase_N: Tran 44.5 1.8E+02 0.0038 31.7 10.5 90 466-558 145-242 (332)
328 TIGR02181 GRX_bact Glutaredoxi 43.5 54 0.0012 26.9 5.2 69 596-667 7-76 (79)
329 PLN02225 1-deoxy-D-xylulose-5- 42.7 1.8E+02 0.0038 35.0 10.9 57 184-248 426-484 (701)
330 PRK12753 transketolase; Review 42.6 1.6E+02 0.0036 35.1 10.8 106 192-362 414-520 (663)
331 KOG2862 Alanine-glyoxylate ami 41.7 2.2E+02 0.0048 30.8 10.2 77 581-660 87-165 (385)
332 cd06062 H2MP_MemB-H2up Endopep 40.6 99 0.0022 29.1 7.1 55 589-647 1-62 (146)
333 COG0680 HyaD Ni,Fe-hydrogenase 39.4 52 0.0011 31.9 5.0 57 587-647 2-65 (160)
334 PRK10264 hydrogenase 1 maturat 39.4 1.3E+02 0.0029 30.0 8.0 57 587-647 4-67 (195)
335 cd06068 H2MP_like-1 Putative [ 39.1 97 0.0021 29.1 6.8 54 591-647 2-61 (144)
336 PRK11892 pyruvate dehydrogenas 38.7 1.6E+02 0.0034 33.6 9.5 34 321-359 275-309 (464)
337 TIGR03182 PDH_E1_alph_y pyruva 38.7 1.5E+02 0.0033 31.8 9.0 90 465-556 132-231 (315)
338 PRK10824 glutaredoxin-4; Provi 38.6 64 0.0014 29.5 5.1 77 586-666 14-96 (115)
339 cd05125 Mth938_2P1-like Mth938 37.8 48 0.001 30.2 4.2 38 584-621 52-90 (114)
340 PRK10466 hybD hydrogenase 2 ma 37.3 1.4E+02 0.003 28.8 7.7 58 588-649 2-66 (164)
341 cd03029 GRX_hybridPRX5 Glutare 36.9 1.6E+02 0.0034 23.7 6.9 69 588-660 2-71 (72)
342 PF02776 TPP_enzyme_N: Thiamin 36.6 2E+02 0.0043 27.7 8.7 50 191-248 50-101 (172)
343 COG0543 UbiB 2-polyprenylpheno 36.6 1.5E+02 0.0033 30.6 8.4 73 577-650 97-174 (252)
344 PLN02269 Pyruvate dehydrogenas 36.4 1.8E+02 0.0039 32.1 9.1 72 484-557 181-257 (362)
345 COG1393 ArsC Arsenate reductas 36.3 85 0.0018 28.7 5.6 49 589-639 3-51 (117)
346 PRK12759 bifunctional gluaredo 36.0 77 0.0017 35.5 6.4 86 588-675 3-103 (410)
347 COG2241 CobL Precorrin-6B meth 35.8 2.8E+02 0.0062 28.1 9.7 73 587-670 95-170 (210)
348 TIGR00130 frhD coenzyme F420-r 35.5 1E+02 0.0022 29.3 6.4 60 587-647 3-70 (153)
349 PRK03767 NAD(P)H:quinone oxido 35.4 2.9E+02 0.0063 27.3 9.9 68 595-664 13-96 (200)
350 PRK08366 vorA 2-ketoisovalerat 35.3 3.4E+02 0.0073 30.2 11.2 48 192-248 61-108 (390)
351 TIGR02194 GlrX_NrdH Glutaredox 35.0 93 0.002 25.2 5.2 57 597-654 8-65 (72)
352 PF04430 DUF498: Protein of un 34.8 30 0.00065 31.1 2.4 37 585-621 52-89 (110)
353 PRK10853 putative reductase; P 33.9 63 0.0014 29.5 4.4 41 597-638 9-49 (118)
354 PRK11544 hycI hydrogenase 3 ma 33.7 1.7E+02 0.0037 28.0 7.5 57 588-647 2-64 (156)
355 cd00518 H2MP Hydrogenase speci 33.3 1.4E+02 0.0031 27.7 6.9 53 591-647 2-60 (139)
356 PHA03050 glutaredoxin; Provisi 33.2 1.4E+02 0.0029 26.9 6.4 70 586-657 12-88 (108)
357 PRK07119 2-ketoisovalerate fer 33.0 61 0.0013 35.5 4.9 47 192-246 60-106 (352)
358 PF03853 YjeF_N: YjeF-related 32.9 1.2E+02 0.0026 29.4 6.4 42 589-630 29-70 (169)
359 COG2089 SpsE Sialic acid synth 32.8 1.2E+02 0.0026 32.8 6.7 68 584-652 145-219 (347)
360 PRK11200 grxA glutaredoxin 1; 32.4 2.9E+02 0.0063 23.0 8.1 72 589-663 3-82 (85)
361 PF01565 FAD_binding_4: FAD bi 32.3 2.1E+02 0.0046 26.0 7.9 77 527-606 3-82 (139)
362 PRK10026 arsenate reductase; P 32.3 1.1E+02 0.0023 29.1 5.7 43 596-639 10-52 (141)
363 PF00289 CPSase_L_chain: Carba 32.1 1.6E+02 0.0035 26.5 6.6 75 587-665 3-100 (110)
364 PF03960 ArsC: ArsC family; I 32.0 80 0.0017 28.1 4.7 39 598-637 6-44 (110)
365 TIGR01616 nitro_assoc nitrogen 30.8 97 0.0021 28.7 5.1 40 597-637 10-49 (126)
366 COG1165 MenD 2-succinyl-6-hydr 30.4 9.3E+02 0.02 28.1 17.7 152 399-557 8-173 (566)
367 PRK08659 2-oxoglutarate ferred 30.3 2.9E+02 0.0063 30.5 9.7 49 192-248 60-108 (376)
368 COG3958 Transketolase, C-termi 29.9 3.3E+02 0.0072 29.1 9.3 59 184-249 52-112 (312)
369 cd00248 Mth938-like Mth938-lik 29.9 64 0.0014 29.0 3.7 35 587-621 53-88 (109)
370 cd03035 ArsC_Yffb Arsenate Red 29.7 94 0.002 27.7 4.7 43 596-639 7-49 (105)
371 PRK08367 porA pyruvate ferredo 29.7 4.8E+02 0.01 29.1 11.2 48 192-248 62-109 (394)
372 TIGR02853 spore_dpaA dipicolin 29.6 1.4E+02 0.003 31.7 6.7 56 585-643 150-215 (287)
373 cd07038 TPP_PYR_PDC_IPDC_like 29.6 3.2E+02 0.007 26.1 8.8 53 187-248 42-96 (162)
374 TIGR00142 hycI hydrogenase mat 29.2 1.5E+02 0.0033 27.8 6.4 56 589-647 1-63 (146)
375 PRK10329 glutaredoxin-like pro 29.0 1.4E+02 0.003 25.1 5.4 61 589-654 3-66 (81)
376 cd05569 PTS_IIB_fructose PTS_I 28.9 2.5E+02 0.0053 24.5 7.1 54 589-646 2-62 (96)
377 TIGR00072 hydrog_prot hydrogen 28.7 2E+02 0.0044 26.9 7.1 54 590-647 1-61 (145)
378 PF11823 DUF3343: Protein of u 28.7 89 0.0019 25.7 4.1 30 591-621 5-34 (73)
379 cd06070 H2MP_like-2 Putative [ 28.6 1.6E+02 0.0035 27.5 6.3 52 591-648 2-57 (140)
380 PTZ00062 glutaredoxin; Provisi 28.2 1.7E+02 0.0038 29.4 6.8 77 586-668 112-196 (204)
381 COG0655 WrbA Multimeric flavod 27.7 2.4E+02 0.0053 28.0 7.9 69 594-662 13-100 (207)
382 PF00258 Flavodoxin_1: Flavodo 27.5 1.3E+02 0.0029 27.5 5.6 30 595-624 8-37 (143)
383 cd05126 Mth938 Mth938 domain. 27.1 66 0.0014 29.4 3.3 57 582-642 54-112 (117)
384 PF00670 AdoHcyase_NAD: S-aden 26.9 78 0.0017 30.8 3.9 59 583-644 20-85 (162)
385 PRK08306 dipicolinate synthase 26.5 1.7E+02 0.0036 31.2 6.7 56 585-643 151-216 (296)
386 cd03030 GRX_SH3BGR Glutaredoxi 26.4 1.9E+02 0.0041 25.2 5.9 67 599-671 17-91 (92)
387 PF10740 DUF2529: Protein of u 26.1 2.3E+02 0.005 27.8 6.8 120 534-658 24-157 (172)
388 PRK09622 porA pyruvate flavodo 26.0 5.5E+02 0.012 28.7 11.0 48 192-248 68-115 (407)
389 cd05560 Xcc1710_like Xcc1710_l 25.4 1E+02 0.0022 27.7 4.2 37 585-621 51-88 (109)
390 PRK13403 ketol-acid reductoiso 25.3 2E+02 0.0044 31.3 7.0 56 585-644 15-78 (335)
391 CHL00144 odpB pyruvate dehydro 25.0 5.2E+02 0.011 28.0 10.2 31 325-360 142-172 (327)
392 PF02882 THF_DHG_CYH_C: Tetrah 24.7 1.3E+02 0.0029 29.0 5.1 51 585-643 35-85 (160)
393 PRK15473 cbiF cobalt-precorrin 24.1 4.2E+02 0.0092 27.4 9.1 40 628-670 154-194 (257)
394 COG0695 GrxC Glutaredoxin and 23.9 2E+02 0.0044 24.1 5.5 62 589-651 3-66 (80)
395 PRK14175 bifunctional 5,10-met 23.9 1.8E+02 0.004 30.9 6.3 36 585-622 157-192 (286)
396 cd01079 NAD_bind_m-THF_DH NAD 23.6 1.5E+02 0.0033 29.7 5.3 88 528-644 31-133 (197)
397 cd05212 NAD_bind_m-THF_DH_Cycl 23.6 1.8E+02 0.0038 27.5 5.5 36 585-622 27-62 (140)
398 TIGR03710 OAFO_sf 2-oxoacid:ac 23.5 3E+02 0.0065 32.2 8.6 48 192-247 249-296 (562)
399 TIGR00014 arsC arsenate reduct 23.2 1.5E+02 0.0032 26.8 4.8 76 596-672 7-96 (114)
400 CHL00201 syh histidine-tRNA sy 23.2 2.3E+02 0.0049 31.9 7.3 56 588-646 327-384 (430)
401 cd04795 SIS SIS domain. SIS (S 23.0 3.1E+02 0.0067 22.4 6.6 71 589-664 1-74 (87)
402 cd02066 GRX_family Glutaredoxi 22.6 3E+02 0.0064 21.1 6.1 64 589-654 2-66 (72)
403 PRK09004 FMN-binding protein M 22.4 2E+02 0.0044 27.1 5.8 31 591-621 5-39 (146)
404 PRK08105 flavodoxin; Provision 22.4 92 0.002 29.5 3.4 36 590-625 4-43 (149)
405 COG0299 PurN Folate-dependent 22.2 2.1E+02 0.0046 28.7 5.9 96 333-446 10-107 (200)
406 PRK09754 phenylpropionate diox 22.2 1.5E+02 0.0031 32.7 5.5 33 586-621 144-176 (396)
407 COG1104 NifS Cysteine sulfinat 22.1 1.9E+02 0.0042 32.1 6.2 75 591-665 94-172 (386)
408 TIGR02690 resist_ArsH arsenica 22.1 3.5E+02 0.0076 27.6 7.8 61 599-659 44-112 (219)
409 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.9 3.8E+02 0.0082 23.8 7.4 32 588-619 1-33 (126)
410 cd03034 ArsC_ArsC Arsenate Red 21.8 1.6E+02 0.0035 26.4 4.8 76 596-672 7-95 (112)
411 cd03032 ArsC_Spx Arsenate Redu 21.8 1.6E+02 0.0034 26.5 4.7 42 596-638 8-49 (115)
412 cd02977 ArsC_family Arsenate R 21.6 1.9E+02 0.0041 25.3 5.1 76 596-672 7-96 (105)
413 PF00070 Pyr_redox: Pyridine n 21.0 2.6E+02 0.0057 22.9 5.6 48 589-639 2-54 (80)
414 cd03031 GRX_GRX_like Glutaredo 20.9 2.2E+02 0.0048 27.2 5.6 72 597-671 15-91 (147)
415 TIGR00173 menD 2-succinyl-5-en 20.8 3.1E+02 0.0067 30.7 7.8 47 193-245 51-97 (432)
416 cd01452 VWA_26S_proteasome_sub 20.7 1.9E+02 0.0041 28.7 5.4 36 210-245 108-144 (187)
417 COG3453 Uncharacterized protei 20.6 2.1E+02 0.0045 26.5 5.0 40 321-362 54-96 (130)
418 PF07991 IlvN: Acetohydroxy ac 20.3 1.1E+02 0.0025 29.7 3.6 34 585-621 3-36 (165)
No 1
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=7e-144 Score=1172.45 Aligned_cols=578 Identities=60% Similarity=0.969 Sum_probs=554.3
Q ss_pred CCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHH
Q 005820 74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKI 153 (676)
Q Consensus 74 ~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~ 153 (676)
+|+|+.|++|.|||+|+.+||++||+|||..+++.|+++|||+|++||+||||+||||||+.|.|+||||+|||+|+||+
T Consensus 2 ~~~L~~i~~P~dLk~ls~~eL~~La~EiR~~li~~vS~~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 2 YPLLDKINSPADLKKLSIEELPQLADEIREFLLEVVSATGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred cchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhccCCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHh
Q 005820 154 LTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNA 233 (676)
Q Consensus 154 l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A 233 (676)
||||+++|.|+||.+||+|||+|.||+||.|++||+|+|||+|+|||.|++++|++++|||+||||+++.||+|||||+|
T Consensus 82 LTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~a 161 (627)
T COG1154 82 LTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNA 161 (627)
T ss_pred hcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc
Q 005820 234 G-YLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM 312 (676)
Q Consensus 234 ~-~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~ 312 (676)
+ ..+.|+|||+|||++ |+ ++++|+++++|+++++++.|+.+|+..|.+++..|..+.+...++++.+|++
T Consensus 162 g~~~~~~~iVILNDNeM-SI--------s~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l 232 (627)
T COG1154 162 GADLKSNLIVILNDNEM-SI--------SPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGL 232 (627)
T ss_pred hhccCCCEEEEEeCCCc-cc--------CCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcc
Confidence 9 556999999999994 64 6789999999999999999999999999999888888999999999999998
Q ss_pred cCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccC-ccccc
Q 005820 313 ISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP-ATGKQ 391 (676)
Q Consensus 313 ~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~-~~g~~ 391 (676)
+.+. ++||+|||+|++|+||||+++|..+|+.+|. -++|++|||.|+|||||++||.++.+|||+.+||+ +||..
T Consensus 233 ~~~~--~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~KGKGY~pAE~d~~~~H~v~~f~~~~tg~~ 308 (627)
T COG1154 233 LVPG--TLFEELGFNYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTKKGKGYKPAEEDPIKYHGVGPFDPIETGQS 308 (627)
T ss_pred cCch--hhHHHhCCeeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCChhhcChhhccCCCCCCccccCcc
Confidence 8764 9999999999999999999999999999998 47999999999999999999999999999999996 88887
Q ss_pred cccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 005820 392 FKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (676)
Q Consensus 392 ~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t 471 (676)
.+.+....+|+++|++.|.+++++|++||.++|+|.+++||..|+++||+||||+||||||+|++|+|||++|++|||++
T Consensus 309 ~~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtGL~~F~~~fP~R~fDVGIAEQHAVT~AAGlA~~G~kPvvaI 388 (627)
T COG1154 309 KKSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTGLVKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI 388 (627)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCChHHHHHhCchhheehhhhHHHHHHHHHHHHhCCCCCEEEE
Confidence 66666778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCC
Q 005820 472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 551 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P 551 (676)
||+|+||||||++||+|+|++||+|+++|+|++|+||+|||+.+|++|++++|||+|++|+|++|++.|+.+|+..+++|
T Consensus 389 YSTFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~~~gP 468 (627)
T COG1154 389 YSTFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQDDGP 468 (627)
T ss_pred ecHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987799
Q ss_pred eEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHH
Q 005820 552 SCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI 631 (676)
Q Consensus 552 ~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i 631 (676)
+.||+||++.+...... +...+++||+.++++|.||+||++|.++..|++|++.|.+.||+++|||+||+||+|++++
T Consensus 469 ~AiRyPrg~~~~~~~~~--~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~ll 546 (627)
T COG1154 469 VAIRYPRGNGVGVILTP--ELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEALL 546 (627)
T ss_pred eEEEecCCCCCCCCccc--ccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHHHH
Confidence 99999999865543322 2357889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCCC
Q 005820 632 RSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLL 666 (676)
Q Consensus 632 ~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~l 666 (676)
++++++++.+||+||+. .||+|+.|+++|++.++.
T Consensus 547 ~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~~ 582 (627)
T COG1154 547 LELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGIL 582 (627)
T ss_pred HHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCCC
Confidence 99999999999999998 799999999999999953
No 2
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=3.9e-138 Score=1173.30 Aligned_cols=592 Identities=58% Similarity=0.974 Sum_probs=548.4
Q ss_pred cccccccccccCCCCCCCCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHh-hhcCCCCCCCccHHHHHHHHHhhccC
Q 005820 57 VCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNV-SKTGGHLGSSLGVIELTVALHYVFNA 135 (676)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v-~~~~GH~~sslg~~el~~aL~~~~~~ 135 (676)
++...++.++|+++++++|+|++|++|.|||+|+.+||++||+|||.+|++.| +++|||+++|||+||||+|||||||.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~L~~i~~P~dlk~L~~~eL~~La~EiR~~li~~v~s~~GGHl~snLGvVELTvALH~VFd~ 138 (701)
T PLN02225 59 VCCSLPNTDEYCDEKFETPILDSIETPLQLKNLSVKELKLLADEIRTELHSVLWKKTQKSMNPSFAAIELTLALHYVFRA 138 (701)
T ss_pred cccCCCccccccCCCCCCchhhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccCCCcCCCccHHHHHHHHHHHhCC
Confidence 33334555688889988999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred CCCccccCcCchHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEE
Q 005820 136 PKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAV 215 (676)
Q Consensus 136 p~D~~i~s~gH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~v 215 (676)
|+|+||||+|||+|+||+||||++.|.+ ||.||++|||++.||+||.|++||+|++||+|+|||.|+++++++++||+|
T Consensus 139 p~DkiiwDvgHQ~Y~HKiLTGR~~~f~~-Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaV 217 (701)
T PLN02225 139 PVDNILWDAVEQTYAHKVLTRRWSAIPS-RQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAV 217 (701)
T ss_pred CCCceeeccccccchhhHhcCChhhcCc-cccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccC
Q 005820 216 IGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIG 295 (676)
Q Consensus 216 iGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g 295 (676)
||||+++.||+|||||+|+..+.|+|||+|||+| |+..+...|...+||+++++|+++++++.|+.+|+.+|.+++.++
T Consensus 218 IGDGaltgGma~EaLN~~g~~~~~livILNDN~m-Si~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~ 296 (701)
T PLN02225 218 IDNATITAGQAYEAMSNAGYLDSNMIVILNDSRH-SLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIG 296 (701)
T ss_pred EcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCC-CCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999995 664443345566799999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhh
Q 005820 296 GPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAA 375 (676)
Q Consensus 296 ~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~ 375 (676)
..+..+..|+++++|+++.+.+.++||+|||+|++|+||||+++|+++|+++|+.+.++|++|||.|+||+
T Consensus 297 ~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~~~~~PvlvHv~T~KGk--------- 367 (701)
T PLN02225 297 KGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITEENR--------- 367 (701)
T ss_pred HHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcCCCCCCEEEEEEecCCC---------
Confidence 77888889999999999977555899999999999999999999999999999864459999999999998
Q ss_pred cccCCcccccCccccccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHH
Q 005820 376 DKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVT 455 (676)
Q Consensus 376 ~~~H~~~~fd~~~g~~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~ 455 (676)
|++||+ .+......+|+++|+++|.+++++|++|+++++||+.+++++.|+++||+||||+|||||+|++
T Consensus 368 ---------d~~tg~-~~~~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl~~f~~~fPdRffDvGIAEQhaVt 437 (701)
T PLN02225 368 ---------DAETGK-NIMVKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASLITFQERFPDRFFNVGMAEQHAVT 437 (701)
T ss_pred ---------CCCCCC-cCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccHHHHHHHccccccccCccHHHHHH
Confidence 456665 2222235789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHH
Q 005820 456 FAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEA 535 (676)
Q Consensus 456 ~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~ 535 (676)
+|+|||++|++||+++|++|+||+||||+|++|++++||+++++++|++|+||+|||+.+|+++|+++|||+|++|+|++
T Consensus 438 ~AAGLA~~G~kPvv~iystFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~ 517 (701)
T PLN02225 438 FSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADED 517 (701)
T ss_pred HHHHHHHCCCEEEEEeehhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCcccc--CCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCC
Q 005820 536 ELFHMVATAAAIDDRPSCFRYPRGNGIGVE--LPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGL 613 (676)
Q Consensus 536 E~~~~~~~al~~~~~P~~ir~~r~~~~~~~--~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi 613 (676)
|+..|+++|+...++|++||+||+..+... ++ .++.+++||++++++|+|++||++|++++.|++|++.|+++||
T Consensus 518 El~~mL~~A~~~~~gPv~IR~pRg~~~~~~~~~~---~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI 594 (701)
T PLN02225 518 ELVNMVATAAYVTDRPVCFRFPRGSIVNMNYLVP---TGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGL 594 (701)
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccCCCCcCCC---CCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCC
Confidence 999999999865679999999998644321 12 2367889999999999999999999999999999999999999
Q ss_pred cEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHHcCCCCCcccc
Q 005820 614 RLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKV 672 (676)
Q Consensus 614 ~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld~~~~~ 672 (676)
+++|||++|+||||+++|.+++++++.||||||++.||||++|++++++.++++.++++
T Consensus 595 ~vtVIdlr~ikPLD~e~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~~l~~~~~~~~~~~v 653 (701)
T PLN02225 595 NVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDGNIKW 653 (701)
T ss_pred CEEEEecCCCCCCCHHHHHHHHhhcCeEEEEcCCCCCchHHHHHHHHHhcCCCcCCCcE
Confidence 99999999999999999999999999999999998899999999999999875543443
No 3
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=7.4e-138 Score=1171.36 Aligned_cols=618 Identities=80% Similarity=1.249 Sum_probs=572.6
Q ss_pred CCccCccccccccccCCCCCCCCCCCcccccccccccccccccchHHHhhccCCCccccc-cccccccCCCCCCCCcccC
Q 005820 1 MALSAFSFPTYVSKATNSGPHKSSPVTSHFFGAALFSHFSHKLDNHQIQLKKRPNGVCAS-LSERGEYHSQRPPTPLLDT 79 (676)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 79 (676)
|+++.|++|.+..+++..+..++|+.+++ +++.+.++ .++.++|++++|+||+||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 69 (641)
T PLN02234 13 MALSVFAFPSYINRNPSLKYLKPSSMSST-----------------------KYSKVRATTFSEKGEYYSNRPPTPLLDT 69 (641)
T ss_pred HHHHhhhchhhhccCCccceecccccccc-----------------------ccceeEEEccCCcccccCCCCCCchhhh
Confidence 56788999999999998888888887544 12222222 3455588899999999999
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCChH
Q 005820 80 INYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRD 159 (676)
Q Consensus 80 i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~~~ 159 (676)
|++|.|||+|+++||+++|++||++|++++++++||+|+|||++||+++||++|+.|+||||||+|||+|+||+++||++
T Consensus 70 i~~p~~~k~l~~~~L~~la~eiR~~ii~~~~~~~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~~ 149 (641)
T PLN02234 70 INHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRRG 149 (641)
T ss_pred cCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhhcCCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhhh
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCC
Q 005820 160 KMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSD 239 (676)
Q Consensus 160 ~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~ 239 (676)
+|.||||.||++|||++.|++++.|++||+|+|||+|+|||+|+++++++++|||++||||++||++|||||+|++.+.|
T Consensus 150 ~l~t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~n 229 (641)
T PLN02234 150 KMKTIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSN 229 (641)
T ss_pred hhcccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccc
Q 005820 240 MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGST 319 (676)
Q Consensus 240 li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~ 319 (676)
||+|+|||+++++||+..+|+++++++++++|+++++++.|.. +.+. .
T Consensus 230 livIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~----------------~~~~----------------~ 277 (641)
T PLN02234 230 MIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIR----------------ETSS----------------T 277 (641)
T ss_pred EEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhccccccc----------------CCHH----------------H
Confidence 9999999998899998889999999999999999999988721 1222 3
Q ss_pred hhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCccccccccchhhh
Q 005820 320 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQ 399 (676)
Q Consensus 320 lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~~~~~~~~~~ 399 (676)
+||+|||+|+++|||||+++|.++|+++++.+.++|++||++|+||+|++++|+++.+||+..+||+++|++.+......
T Consensus 278 ~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~~~E~~~~~~H~~~~~~~~~g~~~~~~~~~~ 357 (641)
T PLN02234 278 LFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPYAERADDKYHGVLKFDPETGKQFKNISKTQ 357 (641)
T ss_pred HHHHcCCEEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcchhhcCCcccCCCCCCCccccccccCCCCCC
Confidence 49999999999999999999999999998754468999999999999999999988899999999999998776544457
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHH
Q 005820 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRA 479 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra 479 (676)
+|+++|+++|.+++++||+|+++++||+++++++.|+++||+||||+|||||+|+++|+|||++|+|||+++|++|++|+
T Consensus 358 sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~~~~f~~~fPdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~fs~Fl~RA 437 (641)
T PLN02234 358 SYTSCFVEALIAEAEADKDIVAIHAAMGGGTMLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRA 437 (641)
T ss_pred CHHHHHHHHHHHHHHHCcCEEEEECCCCCCcchHHHHHHccccccCCCcCHHHHHHHHHHHHHCCCeEEEEehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecCC
Q 005820 480 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRG 559 (676)
Q Consensus 480 ~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~ 559 (676)
||||++++|++++||+++++++|++|.||+|||+.+|++++|++|||+|++|+|+.|++.++++|+..+++|++||++|+
T Consensus 438 ~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~~~~~~Pv~ir~~R~ 517 (641)
T PLN02234 438 YDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDRPSCFRYHRG 517 (641)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCCCEEEEeecc
Confidence 99999999999999999999999889999999999999999999999999999999999999999876779999999998
Q ss_pred CCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCC
Q 005820 560 NGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (676)
Q Consensus 560 ~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~ 639 (676)
......+|.+.+.+.+++||++++++|+|++||++|++++.|++|+++|+++||+++|||++||+|||++++++++++++
T Consensus 518 ~~~~~~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~~ 597 (641)
T PLN02234 518 NGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHE 597 (641)
T ss_pred cccccccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhCC
Confidence 75443344333345688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHcCCCCCccccc
Q 005820 640 VLITVEEGSIGGFGSHVVQFLAQDGLLDGTVKVR 673 (676)
Q Consensus 640 ~vIvvEe~~~gG~gs~v~~~l~~~~~ld~~~~~~ 673 (676)
.|||+||+..||||++|++++++++++|+++|++
T Consensus 598 ~vVt~Ee~~~GG~Gs~Va~~l~e~~~~~~~~~~~ 631 (641)
T PLN02234 598 VLITVEEGSIGGFGSHVVQFLALDGLLDGKLKVY 631 (641)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCCCCCceEE
Confidence 9999999988999999999999999999999875
No 4
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.1e-132 Score=1136.22 Aligned_cols=607 Identities=92% Similarity=1.411 Sum_probs=568.4
Q ss_pred cccccccCCCCCCCCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCcc
Q 005820 61 LSERGEYHSQRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRI 140 (676)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~ 140 (676)
+.+-.+|.+.++++|+|++|++|.|||+|+.++|+++|.+||+++++|+++++||+|++||++||+++||++|++|+|||
T Consensus 18 ~~~~~~~~~~~~~~~~l~~i~~p~dlk~l~~~~l~~la~~iR~~ii~~~~~~~GH~g~~Ls~vel~~aL~~~~~~p~Dr~ 97 (677)
T PLN02582 18 PEESAEYPSQRPPTPLLDTINYPIHMKNLSVKELKQLADELRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDKI 97 (677)
T ss_pred ccccccccCCCCCCchhhhCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCccccHHHHHHHHHHhhCCCCCeE
Confidence 34445675656678999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCc
Q 005820 141 LWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA 220 (676)
Q Consensus 141 i~s~gH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa 220 (676)
|||+|||+|+||+++||.++|.+|||.||++|||++.+++++.|++||+|+++|+|+|+|+|+++++++++|||++|||+
T Consensus 98 i~s~GH~ay~~~~l~gr~~~l~~~r~~g~l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~ 177 (677)
T PLN02582 98 LWDVGHQSYPHKILTGRRDKMHTMRQTNGLSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGA 177 (677)
T ss_pred EEECcchHHHHHHHHccHHHhcccccCCCcCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHH
Q 005820 221 MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE 300 (676)
Q Consensus 221 ~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~ 300 (676)
+++|++|||+|+|+.+++|+++|||||+++|+|+...||+++++|+++++|.++++++.|+.+|+..+.+++.++...+.
T Consensus 178 ~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (677)
T PLN02582 178 MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHE 257 (677)
T ss_pred cchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999988766788
Q ss_pred HHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCC
Q 005820 301 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHG 380 (676)
Q Consensus 301 ~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~ 380 (676)
+..++++..++++.+...++||+|||.|+++|||||+++|.++|+++|+.+.++|++||++|+||+||+++|+++.+|||
T Consensus 258 ~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~~~~~P~vihv~T~KGkG~~~ae~~~~~~H~ 337 (677)
T PLN02582 258 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHG 337 (677)
T ss_pred HHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhcCCCCCEEEEEEecCCCCCChhhcChhhcCC
Confidence 88899999999887755589999999999999999999999999999975226999999999999999999999999999
Q ss_pred cccccCccccccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHH
Q 005820 381 VAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGL 460 (676)
Q Consensus 381 ~~~fd~~~g~~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~Gl 460 (676)
+.+||+++|++.+......+|+++|+++|.+++++|++|+++++||++++++..|+++||+||||+||+||+|+++|+||
T Consensus 338 ~~~f~~~~g~~~~~~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl~~f~~~fP~R~fdvGIAEq~~vg~AaGL 417 (677)
T PLN02582 338 VVKFDPATGKQFKVKAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFARRFPTRCFDVGIAEQHAVTFAAGL 417 (677)
T ss_pred CCCCCcccCCccCCCCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCCCccchHHHHHHcCccccccCcCHHHHHHHHHHH
Confidence 99999999976543233568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHH
Q 005820 461 ACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHM 540 (676)
Q Consensus 461 A~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~ 540 (676)
|+.|++||+++|++|++|+||||++++|++++||+++++++|++|.||+|||+.+|++++|++|||+|++|+|+.|+..+
T Consensus 418 A~~G~kPvv~~fs~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~ 497 (677)
T PLN02582 418 ACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHM 497 (677)
T ss_pred HHCCCeEEEEecHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEc
Q 005820 541 VATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (676)
Q Consensus 541 ~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~ 620 (676)
+++|+...++|++||++|+..+...+|+....+.+++|+++++++|+|++||++|++++.|++|++.|+++||+++|||+
T Consensus 498 l~~al~~~~gPv~IR~pr~~~~~~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~ 577 (677)
T PLN02582 498 VATAAAIDDRPSCFRYPRGNGIGVQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADA 577 (677)
T ss_pred HHHHHhCCCCCEEEEEecCCCCCcccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999756799999999986433333332223567899999999999999999999999999999999999999999999
Q ss_pred cccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHHcCCCC
Q 005820 621 RFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 667 (676)
Q Consensus 621 ~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld 667 (676)
+|++|||++++.+++++++.+||+||++.||||++|++++++.+..+
T Consensus 578 ~~lkPlD~~~i~~~~k~~~~vVtvEe~~~GG~Gs~va~~l~~~~~~~ 624 (677)
T PLN02582 578 RFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLD 624 (677)
T ss_pred CcCCCCCHHHHHHHhhhCCEEEEECCCCCCcHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999988999999999999998543
No 5
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=2.4e-121 Score=1049.07 Aligned_cols=579 Identities=54% Similarity=0.872 Sum_probs=537.2
Q ss_pred ccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcC
Q 005820 77 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTG 156 (676)
Q Consensus 77 l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G 156 (676)
|++|++|.|||+|+.+||+++|.+||+++++|+++++||+|++||++|++++||++|+.|+||||||+|||+|+|++++|
T Consensus 1 ~~~i~~p~dl~~l~~~~l~~la~~iR~~~i~~~~~~~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G 80 (617)
T TIGR00204 1 LSLINSPQELRLLSIDELEKLCDELRRYLLESVSASGGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTG 80 (617)
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhc
Q 005820 157 RRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL 236 (676)
Q Consensus 157 ~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~ 236 (676)
|.++|.+|||.|+++|||++.|++++.|++||+|+++|+|+|+|+|.++++++.+|||++|||+++||++|||||+|+.+
T Consensus 81 ~~~~l~~~r~~g~l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~ 160 (617)
T TIGR00204 81 RREKFSTLRQKKGLHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDL 160 (617)
T ss_pred cHHHhcchhhcCCcCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhc
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCC
Q 005820 237 DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGS 316 (676)
Q Consensus 237 ~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~ 316 (676)
++|+++|||||++ ++ ..+++.++++|+++|.++.|..++...+.+++..+.-...+.+|+++.+|+++.+
T Consensus 161 ~l~~i~ii~~N~~-~i--------~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~- 230 (617)
T TIGR00204 161 KTDMIVILNDNEM-SI--------SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP- 230 (617)
T ss_pred CCCEEEEEECCCc-cc--------CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc-
Confidence 9999999999995 43 3467889999999999999999999999888766533344788999999998886
Q ss_pred ccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCccccccccch
Q 005820 317 GSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSA 396 (676)
Q Consensus 317 ~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~~~~~~~ 396 (676)
.++||+|||+|+++|||||+++|.++|+++++ .++|++||++|+||+||+++|+++.+||+..+|+++++.......
T Consensus 231 -~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~--~~~P~~i~~~T~KGkG~~~~e~~~~~~H~~~~~~~~~~~~~~~~~ 307 (617)
T TIGR00204 231 -GTFFEELGFNYIGPVDGHDLLELIETLKNAKK--LKGPVFLHIQTKKGKGYKPAEKDPIGWHGVGPFDLSTGCLPKSKS 307 (617)
T ss_pred -cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc--CCCCEEEEEEecCCCCCchhhcChhhccCCCCCChhhCCcCCCCC
Confidence 48999999999999999999999999999987 468999999999999999999887789999999998886433323
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHH
Q 005820 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM 476 (676)
Q Consensus 397 ~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl 476 (676)
...+|+++|+++|.+++++|++|+++++||.++++++.|+++||+||||+||+|++|+++|+|||+.|++||+++|++|+
T Consensus 308 ~~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~fP~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~a~Fl 387 (617)
T TIGR00204 308 ALPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRKFPDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIYSTFL 387 (617)
T ss_pred CCccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHHCccccccCCccHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 34689999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 477 QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 477 ~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+|+||||++++|++++||+++++++|++|.||+|||+.+|+++|+++|||+|++|+|+.|++.++++|++..++|+|||+
T Consensus 388 ~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~~~~~~Pv~ir~ 467 (617)
T TIGR00204 388 QRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYTGYHYDDGPIAVRY 467 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99999999999999999999999999989999999999999999999999999999999999999999975569999999
Q ss_pred cCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc
Q 005820 557 PRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 636 (676)
Q Consensus 557 ~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~ 636 (676)
+|+..+....++ ..+.+++|+++++++|+|++||++|.+++.|++|++.|+++||+++|||++|++|||++++.++++
T Consensus 468 ~r~~~~~~~~~~--~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~lkPlD~e~i~~~~~ 545 (617)
T TIGR00204 468 PRGNAVGVELTP--EPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFVKPLDEELILEIAA 545 (617)
T ss_pred ccCCcCCcccCC--ccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcCCcCCHHHHHHHHh
Confidence 998653322221 236788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEcCCC-CCCHHHHHHHHHHHcCCCCCccc
Q 005820 637 SHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVK 671 (676)
Q Consensus 637 ~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~ld~~~~ 671 (676)
+++++|||||++ .||||++|++++.+++ ++.|++
T Consensus 546 k~~~vvtvEE~~~~GGlGs~v~~~l~~~~-~~~~v~ 580 (617)
T TIGR00204 546 SHEKLVTVEENAIMGGAGSAVLEFLMDQN-KLVPVK 580 (617)
T ss_pred hcCeEEEEECCCCccChHHHHHHHHHhcC-CCCCeE
Confidence 999999999998 6999999999999997 455554
No 6
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.3e-119 Score=1037.78 Aligned_cols=586 Identities=61% Similarity=0.980 Sum_probs=542.4
Q ss_pred CCCCCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHH
Q 005820 71 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYP 150 (676)
Q Consensus 71 ~~~~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~ 150 (676)
+|..++|++|++|.|||+|+.+||+++|++||+++++++++++||+|++||++|++++||++|++|+||||||+|||+|+
T Consensus 3 ~~~~~~l~~i~~p~dl~~l~~~~l~~~a~~iR~~ii~~~~~~~GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~ 82 (641)
T PRK12571 3 RPKTPLLDRIKGPADLRALSDAELEQLADELRAEVISAVSETGGHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYP 82 (641)
T ss_pred CCCCChhhhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHH
Confidence 46677999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH
Q 005820 151 HKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM 230 (676)
Q Consensus 151 ~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl 230 (676)
|++|+||+++|++|||.||++|||++.|+++++++.||.|++++.|+|+|+|.++.+++++|||++|||++++|++|||+
T Consensus 83 ~~~l~g~~~~l~~~r~~~~l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal 162 (641)
T PRK12571 83 HKILTGRRDRFRTLRQKGGLSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEAL 162 (641)
T ss_pred HHHHhCCHHHHhhhhhCCCcCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHh
Q 005820 231 NNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 310 (676)
Q Consensus 231 n~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~ 310 (676)
++|+++++|+++|+|||++ ++ ..++++++.+|++++.++.|+.+|+..+.+++.++..+..+..++++.++
T Consensus 163 ~~a~~~~~~li~I~dnN~~-~i--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (641)
T PRK12571 163 NNAGAADRRLIVILNDNEM-SI--------APPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVT 233 (641)
T ss_pred HHHHHhCCCEEEEEECCCe-ee--------cCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhh
Confidence 9999999999999999995 43 34578899999999999999999999999999998888888889999999
Q ss_pred hccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCcccc
Q 005820 311 GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGK 390 (676)
Q Consensus 311 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~ 390 (676)
.++.+ ..+|++|||+|+++|||||+++|.++|+++++. .++|++||++|+||+|++++|+++.+|||.++|+..+++
T Consensus 234 ~~~~~--~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~-~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~ 310 (641)
T PRK12571 234 GMIGG--GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR-ADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGL 310 (641)
T ss_pred hccch--hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC-CCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCc
Confidence 88775 478999999999999999999999999999863 378999999999999999999988899999999999886
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEe
Q 005820 391 QFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 470 (676)
Q Consensus 391 ~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~ 470 (676)
+.+.+....+|+++|+++|.+++++||+|+++++|+.+++++..|+++||+||||+||+|++|+++|+|||+.|++||++
T Consensus 311 ~~~~~~~~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~~~~~f~~~~p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~ 390 (641)
T PRK12571 311 QKKSAPSAPSYTSVFGEELTKEAAEDSDIVAITAAMPLGTGLDKLQKRFPNRVFDVGIAEQHAVTFAAGLAAAGLKPFCA 390 (641)
T ss_pred ccCCCccchhHHHHHHHHHHHHHhhCCCEEEEeCCccCCCChHHHHHhCCCcccccCccHHHHHHHHHHHHHCCCEEEEE
Confidence 54333345789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCC
Q 005820 471 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 550 (676)
Q Consensus 471 t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~ 550 (676)
+|++|++|++|||++++|++++||+++++++|++|+||+|||+++|++++|++||++|++|+|+.|++.++++|++..++
T Consensus 391 ~f~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a~~~~~~ 470 (641)
T PRK12571 391 VYSTFLQRGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDG 470 (641)
T ss_pred ehHHHHHHHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999975589
Q ss_pred CeEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH
Q 005820 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (676)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~ 630 (676)
|++||++|+..+...+|. ..+.+++||+.++++|+|++||++|++++.|++|++.|+++||+++|||+++++|||+++
T Consensus 471 P~~ir~~r~~~~~~~~~~--~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~ 548 (641)
T PRK12571 471 PIAVRFPRGEGVGVEIPA--EGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDEAL 548 (641)
T ss_pred cEEEEEecCcCCccccCC--CCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHH
Confidence 999999998654333333 235678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCCC--CCccc
Q 005820 631 IRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLL--DGTVK 671 (676)
Q Consensus 631 i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~l--d~~~~ 671 (676)
+.+++++++ ++++||+. .||||++|++++.++++. +.|++
T Consensus 549 i~sv~k~~~-vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~ 591 (641)
T PRK12571 549 TDLLVRHHI-VVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLR 591 (641)
T ss_pred HHHHhhhCC-EEEEECCCCCCCHHHHHHHHHHhcCccccCCCeE
Confidence 988888775 56666665 799999999999999863 45544
No 7
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.6e-112 Score=971.23 Aligned_cols=537 Identities=38% Similarity=0.652 Sum_probs=489.1
Q ss_pred cccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHc
Q 005820 76 LLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILT 155 (676)
Q Consensus 76 ~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~ 155 (676)
+|++|++|.|||+|+.+||++||+|||.++++.+++++||++++||++|++++||++||.|+|+||||+|||+|+|++++
T Consensus 2 ~l~~~~~p~d~~~l~~~~l~~l~~~ir~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~ 81 (581)
T PRK12315 2 YLEKINSPADLKKLSLDELEQLASEIRTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLT 81 (581)
T ss_pred chhhcCCHHHHhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhh
Q 005820 156 GRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGY 235 (676)
Q Consensus 156 G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~ 235 (676)
||...+.+.|++|+++|||++.|++++.++.||.|+++|+|+|+|+|+++++.+++|||++|||++++|++|||||+|++
T Consensus 82 G~~~~~~~~~~~g~~~G~~~~~~s~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~ 161 (581)
T PRK12315 82 GRKEAFLDPDHYDDVTGYTNPEESEHDFFTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAE 161 (581)
T ss_pred CCccchhhHHHcCCCCCCCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHh
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCC
Q 005820 236 LDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISG 315 (676)
Q Consensus 236 ~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~ 315 (676)
|++|+|+|||||++ ++. .++++++..+.+++.++. .+.
T Consensus 162 ~k~~li~Ii~dN~~-si~--------~~~~~~~~~l~~~~~~~~-------------------~~~-------------- 199 (581)
T PRK12315 162 LKSNLIIIVNDNQM-SIA--------ENHGGLYKNLKELRDTNG-------------------QSE-------------- 199 (581)
T ss_pred hCCCEEEEEECCCC-cCC--------CCCchhhhhhhhhhhccc-------------------ccH--------------
Confidence 99999999999994 542 345555544444332211 011
Q ss_pred CccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCccccccccc
Q 005820 316 SGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSS 395 (676)
Q Consensus 316 ~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~~~~~~ 395 (676)
..+|++|||++++++||||++++.++++++++ .++|++||++|+||+||++++.++.+||+..+|+..+++..++.
T Consensus 200 --~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G~~~~~~~~~~~h~~~~f~~~~~~~~~~~ 275 (581)
T PRK12315 200 --NNLFKAMGLDYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKGYQPAEENKEAFHWHMPFDLETGQSKVPA 275 (581)
T ss_pred --HHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCCCChhhcCHHhcCCCCCCCcccCcccCCC
Confidence 23499999999987799999999999999986 57999999999999999887778889999989998887643322
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhH
Q 005820 396 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSF 475 (676)
Q Consensus 396 ~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~F 475 (676)
...+|+++|+++|.+++++|++|+++++|++++++++.|+++||+||||+||+||+|+++|+|||+.|++||+.+|++|
T Consensus 276 -~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~~~~f~~~fP~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~fs~F 354 (581)
T PRK12315 276 -SGESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFGLKEFRKKYPDQYVDVGIAEQESVAFASGIAANGARPVIFVNSTF 354 (581)
T ss_pred -CCcCHHHHHHHHHHHHhccCCCEEEEeCccccccCcHHHHHhccccccCCCchHHHHHHHHHHHHHCcCeEEEEeeHHH
Confidence 2568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 005820 476 MQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (676)
Q Consensus 476 l~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir 555 (676)
++|+||||++++|++++||+++++++|+++ ||+|||+++|+++||++|||+|++|+|+.|+..++++|++..++|+|||
T Consensus 355 l~ra~dQi~~d~a~~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a~~~~~gP~~ir 433 (581)
T PRK12315 355 LQRAYDQLSHDLAINNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWALTQHEHPVAIR 433 (581)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 999999999999999999999999999877 9999999999999999999999999999999999999997557999999
Q ss_pred ecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEccccCcCcHHHHHHH
Q 005820 556 YPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALIRSL 634 (676)
Q Consensus 556 ~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~-Gi~v~VId~~~l~P~d~e~i~~~ 634 (676)
++|+.......+ ...++.++++++++|+|++||++|++++.|++|++.|+++ ||+++|||++|++|||++.+.++
T Consensus 434 ~~r~~~~~~~~~----~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~ikPlD~~~i~~~ 509 (581)
T PRK12315 434 VPEHGVESGPTV----DTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFITGLDEELLEKL 509 (581)
T ss_pred EcCCccCCCCCC----ccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcCCCCCHHHHHHH
Confidence 999875332111 1234456889999999999999999999999999999998 99999999999999999999999
Q ss_pred hccCCEEEEEcCCC-CCCHHHHHHHHHHHcC
Q 005820 635 AKSHEVLITVEEGS-IGGFGSHVVQFLAQDG 664 (676)
Q Consensus 635 ~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~ 664 (676)
+++++.+||+||++ .||||++|++++++.+
T Consensus 510 ~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~ 540 (581)
T PRK12315 510 KEDHELVVTLEDGILDGGFGEKIARYYGNSD 540 (581)
T ss_pred HhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC
Confidence 99999999999998 6999999999999875
No 8
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.8e-107 Score=931.72 Aligned_cols=540 Identities=64% Similarity=1.005 Sum_probs=486.3
Q ss_pred CCCCCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHH
Q 005820 71 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYP 150 (676)
Q Consensus 71 ~~~~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~ 150 (676)
++..|+|++|++|.|||+|+.++|+++|++||+++++|+.+++||+|++||++|++++||++|+.||||||||+||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~iR~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~y~ 80 (580)
T PRK05444 1 IPKYPLLDTINSPADLKKLSEEELPQLADEIREFLIDVVSKTGGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQAYP 80 (580)
T ss_pred CCCCchhhccCCHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHHHH
Confidence 46679999999999999999999999999999999999988899999999999999999999998999999999999999
Q ss_pred HHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhc-CCCCeEEEEEcCCcccccchHHH
Q 005820 151 HKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-GRKNNVVAVIGDGAMTAGQAYEA 229 (676)
Q Consensus 151 ~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~-~~~~~vv~viGDGa~~eG~~~EA 229 (676)
|++++|+.++|++|||.|+++|||++.+++++.+++|++|+++|+|+|+|+|.+++ +++++|||++|||+++||++|||
T Consensus 81 ~~~~~g~~~~l~~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Ea 160 (580)
T PRK05444 81 HKILTGRRDRFDTLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEA 160 (580)
T ss_pred HHHHhCcHHHhcCcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHH
Confidence 99999999999999999999999999899999999999999999999999999998 58899999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH
Q 005820 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (676)
Q Consensus 230 ln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (676)
+++|+++++|+++|+|||++ ++.+ +.. .....+. ..++.
T Consensus 161 l~~A~~~~~nli~IvdnN~~-~i~~-----~~~---~~~~~~~-------------------------~~~~~------- 199 (580)
T PRK05444 161 LNNAGDLKSDLIVILNDNEM-SISP-----NVG---ALSNYLA-------------------------RLRSS------- 199 (580)
T ss_pred HHHHHhhCCCEEEEEECCCC-cCCC-----cch---hhhhhhc-------------------------cccHH-------
Confidence 99999999999999999984 3321 111 1000000 01122
Q ss_pred hhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCccc
Q 005820 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATG 389 (676)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g 389 (676)
.+|++|||+++.++||||++++.++++++++ .++|++|+++|.||+|++++|+++.+||+.++|+...+
T Consensus 200 ---------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G~~~~e~~~~~~h~~~~~~~~~~ 268 (580)
T PRK05444 200 ---------TLFEELGFNYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKGYAPAEADPIKYHGVGKFDPETG 268 (580)
T ss_pred ---------HHHHHcCCCeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcCCChhhcCccccCCCCCCCcccC
Confidence 3489999999877899999999999999886 47999999999999999999887778999999987765
Q ss_pred ccccc-chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeE
Q 005820 390 KQFKS-SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPF 468 (676)
Q Consensus 390 ~~~~~-~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~ 468 (676)
+...+ .....+|+++|+++|.+++++||+++++++|+.+++++..|+++||+||||+||+||+|+++|+|||+.|++||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~f~~~~p~R~i~~GIaE~~mvg~A~GlA~~G~~p~ 348 (580)
T PRK05444 269 EQPKSSKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPV 348 (580)
T ss_pred CccccCCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHHHHHHhhhhccCCChHHHHHHHHHHHHHHCCCeeE
Confidence 43322 11236899999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred EeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhC
Q 005820 469 CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 548 (676)
Q Consensus 469 ~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~ 548 (676)
+++|++|++|++|||++++|++++||+++++++|++|+||+|||+++|++++|++||++|++|+|++|+++++++|++..
T Consensus 349 ~~~f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~~~ 428 (580)
T PRK05444 349 VAIYSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALAYD 428 (580)
T ss_pred EEeeHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999756
Q ss_pred CCCeEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcH
Q 005820 549 DRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH 628 (676)
Q Consensus 549 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~ 628 (676)
++|+|||++|+..+....+ +.+.+++|+++++++|+|++||++|++++.|++|+++|+ +++|||++|++|||+
T Consensus 429 ~~P~~ir~~r~~~~~~~~~---~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i~p~D~ 501 (580)
T PRK05444 429 DGPIAIRYPRGNGVGVELP---ELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFVKPLDE 501 (580)
T ss_pred CCcEEEEecCCCCCCCCCC---CcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcCCccCH
Confidence 8999999999875432222 146788999999999999999999999999999999996 899999999999999
Q ss_pred HHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCCCCCcc
Q 005820 629 ALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTV 670 (676)
Q Consensus 629 e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~ld~~~ 670 (676)
+++.+++++++++||+||++ .||||++|++++.++++ +.|+
T Consensus 502 ~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~-~~~v 543 (580)
T PRK05444 502 ELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL-DVPV 543 (580)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC-CCCE
Confidence 99999999999999999998 59999999999999875 3343
No 9
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-95 Score=788.71 Aligned_cols=560 Identities=34% Similarity=0.456 Sum_probs=478.1
Q ss_pred CCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHhh-cc----CC----CCccccC
Q 005820 74 TPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV-FN----AP----KDRILWD 143 (676)
Q Consensus 74 ~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~~-~~----~p----~D~~i~s 143 (676)
||.+++++.+..++||++. .+++++ .++||+++++|.+++...||.. ++ +| +||||||
T Consensus 2 ~~~~~~~~~~~~~n~lri~------------si~~~~~a~sghp~s~~s~A~~~~vlf~~~mr~~~~~p~~~n~Drfvls 69 (632)
T KOG0523|consen 2 TPSQDSQILKDAVNNLRIL------------SIDATSAAKSGHPGSPLSLAPIMHVLFFEVMRYNPADPYWFNRDRFVLS 69 (632)
T ss_pred CchhhhhhhHHHhhhhhhh------------hHHHHHhhhcCCCCCccccchhhhhhhhhheecccCCcCCCCCceEEEe
Confidence 4666666666666665554 455554 4779999999999999999743 22 23 7999999
Q ss_pred cCchH---HHHHHHcC--ChHHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC-CCeEEEEE
Q 005820 144 VGHQT---YPHKILTG--RRDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-KNNVVAVI 216 (676)
Q Consensus 144 ~gH~~---y~~~~l~G--~~~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~-~~~vv~vi 216 (676)
+||+| |+|++|+| +.++|.+|||.++ +.|||. .+++++.+++||+|++|++|+|||+++|++++ +++|||++
T Consensus 70 ~GHa~~llYa~~~l~G~~~~edl~~~Rq~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vl 148 (632)
T KOG0523|consen 70 NGHACPLLYAHWHLAGYDREEDLKNFRQIGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVL 148 (632)
T ss_pred ccccchHHHHHHHHhccCcHHHHHHHHhhCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEE
Confidence 99999 99999999 7899999999998 578887 57999999999999999999999999999999 99999999
Q ss_pred cCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCC
Q 005820 217 GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGG 296 (676)
Q Consensus 217 GDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~ 296 (676)
|||+++||++||||++|++++++.+++++||+++++++++..|...+|..+.....++++..+ .|.
T Consensus 149 GDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V--------------~~~ 214 (632)
T KOG0523|consen 149 GDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIV--------------DGG 214 (632)
T ss_pred cCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEE--------------cCc
Confidence 999999999999999999999555555555554899988888888888776555544444433 344
Q ss_pred chHHHHHHHHH--HHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhh
Q 005820 297 PMHELAAKVDE--YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKA 374 (676)
Q Consensus 297 ~~~~~~~k~~~--~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~ 374 (676)
+++.+.+.+.. +.+++...-..+.|+++|+.+++++++|......+.++++++..+- |+++++.+.++++|+..+..
T Consensus 215 d~d~i~ka~~~a~~~k~kpt~i~~~t~~g~G~~~ig~~~~Hg~pl~~~~~~~~k~~~~~-P~~~~~v~~~~~~~p~~~~~ 293 (632)
T KOG0523|consen 215 DVDEIRKAIGKAKSVKGKPTAIKATTFIGRGSPYIGSESVHGAPLGEDDVERVKSIKGL-PVLIFVVPEKVKLYPEKPVE 293 (632)
T ss_pred CHHHHHHHHhhhhhccCCceeeeeeeeeecCccccccccccCCcchhhHHHHHHhhcCC-cceeEEeccccccCCCcccc
Confidence 45555555544 3477777778889999999999999999998888888888876444 99999999999999876544
Q ss_pred h--cccCCcccccCccccccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHH
Q 005820 375 A--DKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQH 452 (676)
Q Consensus 375 ~--~~~H~~~~fd~~~g~~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~ 452 (676)
. ...|.++.++..+.++.+..++...++++|.++|.++++.+|+|+.+++|+..|+.++-|+++||+|||++||+||+
T Consensus 294 ~~~~~~~~i~~~~~~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~ 373 (632)
T KOG0523|consen 294 DARAISVRIPKIWEKSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQN 373 (632)
T ss_pred cccccccCcCccccccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhh
Confidence 3 46788999999998888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-eeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEe
Q 005820 453 AVTFAAGLACEGL-KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMA 530 (676)
Q Consensus 453 ~v~~A~GlA~~G~-~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~ 530 (676)
|+++|+|+|..|. +|||.||+.|++||+|||++. ++.+.+|++++.|.|+ +|+||||||++||+++||++||++|++
T Consensus 374 mv~ia~G~a~~g~~~Pf~~tf~~F~trA~dqvr~~-a~s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~ 452 (632)
T KOG0523|consen 374 MVGIANGIACRGRTIPFCGTFAAFFTRAFDQVRMG-ALSQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFR 452 (632)
T ss_pred hHHhhhchhcCCCccchhHHHHHHHHHhhhheeeh-hhccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEe
Confidence 9999999999997 999999999999999999765 8888888888887776 899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCcee-EeecCC-cEEEEEechhHHHHHHHHHHH
Q 005820 531 PSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIEGE-RVALLGYGTAVQSCLAASALL 608 (676)
Q Consensus 531 Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~-vl~eG~-dv~Iva~Gs~v~~aleAa~~L 608 (676)
|+|..|+..++..|++..+.|++++++|++.+....+ ..+++||++ +++++. ||+||++|+++++|++||+.|
T Consensus 453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~~~~~~~~~-----~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L 527 (632)
T KOG0523|consen 453 PADGNETENAVATAANTKGTPSIRTLSRQNLPIYNNT-----EIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELL 527 (632)
T ss_pred cCchHHHHHHHHHHHhcCCCeeEEEecCccccccCCC-----chhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHH
Confidence 9999999999999999888899999999986554322 347789986 778876 999999999999999999999
Q ss_pred HhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHHcCCCCC
Q 005820 609 ESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDG 668 (676)
Q Consensus 609 ~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld~ 668 (676)
+++||+++|+|+++|||||..+|+++.+.++..|+|+|+..++ |++..++++..+.+++
T Consensus 528 ~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~-gsi~~~~~a~~g~~~~ 586 (632)
T KOG0523|consen 528 SEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPA-GSIEVAVTAAWGKYPG 586 (632)
T ss_pred HhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCC-cchhheeeehhcccCC
Confidence 9999999999999999999999999999998777777665444 5555556666665555
No 10
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.3e-91 Score=809.27 Aligned_cols=499 Identities=24% Similarity=0.341 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHh-h--ccC------CCCccccCcCchH---HHHHHHcCCh-
Q 005820 93 ELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-V--FNA------PKDRILWDVGHQT---YPHKILTGRR- 158 (676)
Q Consensus 93 ~l~~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~-~--~~~------p~D~~i~s~gH~~---y~~~~l~G~~- 158 (676)
..+++|++||.++++|+. .++||+|++||++|++++||+ + |+. ++||||||+||++ |+|++++|+.
T Consensus 5 ~~~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~l~~~~~~~~~~~rDr~vls~GH~~~~lYa~l~l~G~~~ 84 (661)
T PTZ00089 5 IDEKCANEIRCLSADLVQKANSGHPGAPMGMAPIAHILWSEVMKYNPKDPRWINRDRFVLSNGHASALLYSMLHLTGYDL 84 (661)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHhhcCCCcCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCC
Confidence 357789999999999996 599999999999999999996 4 432 5899999999999 9999999983
Q ss_pred --HHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEcCCcccccc
Q 005820 159 --DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 159 --~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viGDGa~~eG~ 225 (676)
++|.+||+.++ ++|||++.+++++.+++||+|+++|.|+|+|+|+|+++. +++|||++|||+++||+
T Consensus 85 ~~~~l~~fr~~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~ 164 (661)
T PTZ00089 85 SMEDLKNFRQLGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGV 164 (661)
T ss_pred CHHHHHhcCCCCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHH
Confidence 78999999988 689999989999999999999999999999999999764 88999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHH
Q 005820 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (676)
Q Consensus 226 ~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k 304 (676)
+|||+|+|+.+++ |||+|+|||++ ++. +++... . .+++..+
T Consensus 165 ~~EAl~~A~~~~L~nLi~i~d~N~~-~i~-----~~~~~~--~------------------------------~~~~~~~ 206 (661)
T PTZ00089 165 SQEALSLAGHLGLEKLIVLYDDNKI-TID-----GNTDLS--F------------------------------TEDVEKK 206 (661)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCc-ccc-----cCcccc--c------------------------------CccHHHH
Confidence 9999999999995 69999999994 442 222100 0 0233434
Q ss_pred HHHHHhhccCCCccchhhhcCceeeccCCCC-CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc
Q 005820 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK 383 (676)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~ 383 (676)
|++|||+|+.++||| |+++|.++++++++. .++|++||++|+||+|+ . +.++.+|||.++
T Consensus 207 ----------------f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~-~~~P~~I~~~T~kG~G~-~-~e~~~~~H~~~~ 267 (661)
T PTZ00089 207 ----------------YEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS-KGKPKLIIVKTTIGYGS-S-KAGTEKVHGAPL 267 (661)
T ss_pred ----------------HHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEEeeecCCC-C-cCCCCCccCCCC
Confidence 999999999766999 999999999999864 36899999999999994 4 445678999862
Q ss_pred -------------------ccCc--cc----------ccc----------------------------------------
Q 005820 384 -------------------FDPA--TG----------KQF---------------------------------------- 392 (676)
Q Consensus 384 -------------------fd~~--~g----------~~~---------------------------------------- 392 (676)
|++. .. +..
T Consensus 268 ~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (661)
T PTZ00089 268 GDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQHVEKKKENYEAWKKRFAKYTAAFPKEAQAIERRFKGELPPGWEKKLPK 347 (661)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccCCchhhhhhhhh
Confidence 5542 00 000
Q ss_pred -ccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhhhCC-CceeeccccHHHHHHHHHHHHh-cC
Q 005820 393 -KSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFP-TRCFDVGIAEQHAVTFAAGLAC-EG 464 (676)
Q Consensus 393 -~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~~p-~R~id~GIaE~~~v~~A~GlA~-~G 464 (676)
..+.+..+++++++++|.++++.+|+++..++|+..|+.+ ..|+++|| +||||+||+||+|+++|+|||+ .|
T Consensus 348 ~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G 427 (661)
T PTZ00089 348 YTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKASPEGRYIRFGVREHAMCAIMNGIAAHGG 427 (661)
T ss_pred hcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccCCCCCeeeeeecHHHHHHHHHHHHHcCC
Confidence 0001123567788889999999999999999999888865 37999999 8999999999999999999999 78
Q ss_pred CeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 465 LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 465 ~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
++||++||++|++|++||| ++.|++++||++++++.|+ +|+||||||+++|+++||++|||+|++|+|+.|+..++++
T Consensus 428 ~~P~~~tf~~Fl~Ra~dqi-r~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~~~l~~ 506 (661)
T PTZ00089 428 FIPFGATFLNFYGYALGAV-RLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETSGAYAL 506 (661)
T ss_pred CeEEEEehHHHHHHHHHHH-HHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHHHHHHH
Confidence 9999999999999999996 5679999999999988877 8999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeecC---CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEc
Q 005820 544 AAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG---ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (676)
Q Consensus 544 al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG---~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~ 620 (676)
++...++|+|||++|+..+... . ....+..+++++++++ +|++||++|+++.+|++|++.|++ |++++|||+
T Consensus 507 al~~~~gP~~irl~R~~~~~~~--~--~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~~Vv~~ 581 (661)
T PTZ00089 507 ALANAKTPTILCLSRQNTPPLP--G--SSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNVRVVSM 581 (661)
T ss_pred HHHcCCCCEEEEecCCCCCCcC--C--CccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCeEEEeC
Confidence 9976789999999998754321 1 1223445667899975 799999999999999999999999 999999999
Q ss_pred cccCcCcHHHHHHH---hc-cCCEEEEEcCCCCCCHHH
Q 005820 621 RFCKPLDHALIRSL---AK-SHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 621 ~~l~P~d~e~i~~~---~~-~~~~vIvvEe~~~gG~gs 654 (676)
+|++|||.+.+... +. ++..+|++|++...||..
T Consensus 582 ~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g~~~ 619 (661)
T PTZ00089 582 PCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFGWEK 619 (661)
T ss_pred CCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHHHHh
Confidence 99999999986532 44 556789999998777654
No 11
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=4.7e-91 Score=803.03 Aligned_cols=499 Identities=22% Similarity=0.289 Sum_probs=419.9
Q ss_pred HHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHhhcc-----C----CCCccccCcCchH---HHHHHHcCCh---
Q 005820 95 KQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----A----PKDRILWDVGHQT---YPHKILTGRR--- 158 (676)
Q Consensus 95 ~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~~~~-----~----p~D~~i~s~gH~~---y~~~~l~G~~--- 158 (676)
+++|++||+++++|+.+ ++||+|++||++|++++||+.|. + +|||||||+||++ |++++++|+.
T Consensus 5 ~~~a~~iR~~~~~~~~~a~~GH~g~~ls~~~i~~~Ly~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12753 5 KDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWRDFLKHNPTNPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPI 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHhCCCccCCCCCCCCcEEEecccHHHHHHHHHHHhCCCCCH
Confidence 56799999999999985 99999999999999999996542 2 2799999999999 9999999973
Q ss_pred HHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEcCCcccccchH
Q 005820 159 DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQAY 227 (676)
Q Consensus 159 ~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viGDGa~~eG~~~ 227 (676)
++|++|||.|+ ++|||+...+++..+++|++|+++|+|+|||+|.|+++. +++|||++|||+++||++|
T Consensus 85 e~L~~fr~~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12753 85 EELKNFRQLHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHH
Confidence 88999999998 699998877888889999999999999999999998763 6899999999999999999
Q ss_pred HHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHH
Q 005820 228 EAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 306 (676)
Q Consensus 228 EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~ 306 (676)
||+|+|++|++ |||+|+|||++ ++ ++++..+ + .+++..+
T Consensus 165 EA~~~A~~~kL~nLi~ivd~N~~-~i-----~~~~~~~--~------------------------------~~~~~~~-- 204 (663)
T PRK12753 165 EVCSLAGTLGLGKLIGFYDHNGI-SI-----DGETEGW--F------------------------------TDDTAKR-- 204 (663)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC-cC-----CCChhhh--c------------------------------ChhHHHH--
Confidence 99999999996 59999999994 44 2222210 0 0344444
Q ss_pred HHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc----
Q 005820 307 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA---- 382 (676)
Q Consensus 307 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~---- 382 (676)
|++|||+++.++||||+++|.+++++++.. .++|++|+++|+||+|++++|+. .+|||.+
T Consensus 205 --------------f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~-~~~P~~I~~~T~kG~G~~~~e~~-~~~H~~~l~~~ 268 (663)
T PRK12753 205 --------------FEAYHWHVIHEIDGHDPQAIKEAILEAQSV-KDKPSLIICRTIIGFGSPNKAGK-EESHGAPLGEE 268 (663)
T ss_pred --------------HHHcCCeEEceeCCCCHHHHHHHHHHHHHC-CCCeEEEEEEEeecCCCCcccCC-CCccCCCCCHH
Confidence 999999998668999999999999998863 47999999999999999988654 6799843
Q ss_pred --------------cccCc-----------cccc------------------------------ccc-------------
Q 005820 383 --------------KFDPA-----------TGKQ------------------------------FKS------------- 394 (676)
Q Consensus 383 --------------~fd~~-----------~g~~------------------------------~~~------------- 394 (676)
+|+.. ++++ .+.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12753 269 EVALTRQKLGWHHPPFEIPKEIYAAWDAREKGEKAEQAWNEKFAAYKKAYPELAAEFTRRMSGGLPKDWEKKTQKYINEL 348 (663)
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHhhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 34441 1210 000
Q ss_pred --chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhhhCCCceeeccccHHHHHHHHHHHHh-cCCe
Q 005820 395 --SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLK 466 (676)
Q Consensus 395 --~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~~p~R~id~GIaE~~~v~~A~GlA~-~G~~ 466 (676)
+.+....+++++++|.++++.+|+++++++|+.+|+.+ ..|+++||+||||+||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~p~r~i~~GIaEq~mv~~aaGlA~~~G~~ 428 (663)
T PRK12753 349 QANPAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFV 428 (663)
T ss_pred hccccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcCCCCEEEeeecHHHHHHHHHHHHHhCCCe
Confidence 01133567788999999999999999999999988866 789999999999999999999999999999 7899
Q ss_pred eEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHH
Q 005820 467 PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAA 545 (676)
Q Consensus 467 p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al 545 (676)
||++||++|++|++|||+. .|++++||++++++.|+ +|+||||||+++|+++||.+|||+|++|+|++|+..++..++
T Consensus 429 P~~~tf~~F~~r~~~qir~-~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~~~~~al 507 (663)
T PRK12753 429 PYTATFLMFVEYARNAARM-AALMKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAVAWKLAI 507 (663)
T ss_pred EEEEehHHHHHHHHHHHHH-HHhcCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHHHHHHHH
Confidence 9999999999999999986 59999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEecCCCCccccCCCCCC-CCccccCceeEeecCC---cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 546 AIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 546 ~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+..++|+|||++|++.+... .... ...+..|+ +++++++ |++||++|+++.+|++|+++|+++||+++|||++
T Consensus 508 ~~~~gP~~irl~R~~~~~~~--~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi~~~Vv~~~ 584 (663)
T PRK12753 508 ERHNGPTALILSRQNLAQQE--RTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGRNVRVVSMP 584 (663)
T ss_pred hcCCCCEEEEecCCCCCCCC--CcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 76689999999998754321 1100 12344454 8899864 9999999999999999999999999999999999
Q ss_pred ccCcCcHHHH--HH-Hhcc-CCEEEEEcCCCCCCHH
Q 005820 622 FCKPLDHALI--RS-LAKS-HEVLITVEEGSIGGFG 653 (676)
Q Consensus 622 ~l~P~d~e~i--~~-~~~~-~~~vIvvEe~~~gG~g 653 (676)
|++|||++.+ ++ ++.. ....|+||++...+|.
T Consensus 585 ~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~~~~~~ 620 (663)
T PRK12753 585 STDIFDAQDEAYRESVLPSNVTARVAVEAGIADYWY 620 (663)
T ss_pred cCCccchhHHHHHHhhcccccceEEEEccChHHHHH
Confidence 9999999976 22 2322 2234899998543333
No 12
>PLN02790 transketolase
Probab=100.00 E-value=8.7e-91 Score=801.47 Aligned_cols=494 Identities=23% Similarity=0.330 Sum_probs=420.6
Q ss_pred HHHHHHHHhh-hcCCCCCCCccHHHHHHHHHhh---ccC------CCCccccCcCchH---HHHHHHcCCh----HHhhh
Q 005820 101 LRADVIFNVS-KTGGHLGSSLGVIELTVALHYV---FNA------PKDRILWDVGHQT---YPHKILTGRR----DKMHT 163 (676)
Q Consensus 101 iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~~---~~~------p~D~~i~s~gH~~---y~~~~l~G~~----~~l~~ 163 (676)
||.++++|+. +++||+|++||++|++++||+. |+. +|||||||+||++ |+|++++|+. ++|++
T Consensus 1 iR~~~~~~~~~a~~GH~g~~ls~~ei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~ 80 (654)
T PLN02790 1 IRFLAIDAVNKANSGHPGLPMGCAPMGHVLYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQ 80 (654)
T ss_pred ChHHHHHHHHhcCCCcCCchhhHHHHHHHHHHhhcccCCCCCCCCCCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6999999996 5999999999999999999976 542 4899999999999 9999999985 78999
Q ss_pred hHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhc-----CC-----CCeEEEEEcCCcccccchHHHHHH
Q 005820 164 MRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-----GR-----KNNVVAVIGDGAMTAGQAYEAMNN 232 (676)
Q Consensus 164 ~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~-----~~-----~~~vv~viGDGa~~eG~~~EAln~ 232 (676)
|||.|++ +|||++.+++++.+++||+|+++|.|+|||+|.|++ ++ +++|||++|||+++||++|||+|+
T Consensus 81 ~r~~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~ 160 (654)
T PLN02790 81 FRQWGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASL 160 (654)
T ss_pred hccCCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHH
Confidence 9999985 699999899999999999999999999999999963 32 789999999999999999999999
Q ss_pred hhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhh
Q 005820 233 AGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG 311 (676)
Q Consensus 233 A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~ 311 (676)
|++|++ ||++|+|||++ ++.+.+ . .. ..+++..+
T Consensus 161 A~~~~L~nli~i~d~N~~-~i~~~~-----~---~~-----------------------------~~~~~~~~------- 195 (654)
T PLN02790 161 AGHWGLGKLIVLYDDNHI-SIDGDT-----E---IA-----------------------------FTEDVDKR------- 195 (654)
T ss_pred HHHhCCCCEEEEEecCCc-cccCCc-----c---cc-----------------------------cchhHHHH-------
Confidence 999995 59999999994 543221 1 00 01344444
Q ss_pred ccCCCccchhhhcCceeeccCCC-CCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc--------
Q 005820 312 MISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-------- 382 (676)
Q Consensus 312 ~~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~-------- 382 (676)
|++|||+++.+.|| ||+++|.++++++++. .++|++||++|+||+|++++| ++.+||+.+
T Consensus 196 ---------f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~-~~~P~lI~~~T~kG~G~~~~e-~~~~~H~~~~~~~~~~~ 264 (654)
T PLN02790 196 ---------YEALGWHTIWVKNGNTDYDEIRAAIKEAKAV-TDKPTLIKVTTTIGYGSPNKA-NSYSVHGAALGEKEVDA 264 (654)
T ss_pred ---------HHHcCCeEEEECCCCCCHHHHHHHHHHHHhc-CCCeEEEEEEEeecCCCcccc-CCCCcCCCCCCHHHHHH
Confidence 99999999965455 8999999999999863 479999999999999999855 456899986
Q ss_pred ----------cccCcccc-c--------------------------cc---c-----------------------chhhh
Q 005820 383 ----------KFDPATGK-Q--------------------------FK---S-----------------------SARTQ 399 (676)
Q Consensus 383 ----------~fd~~~g~-~--------------------------~~---~-----------------------~~~~~ 399 (676)
+|+..++. . .+ . +.+..
T Consensus 265 ~~~~l~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (654)
T PLN02790 265 TRKNLGWPYEPFHVPEDVKSHWSKHTKEGAALEAEWNAKFAEYKKKYPEEAAELKSLISGELPSGWEKALPTFTPEDPAD 344 (654)
T ss_pred HHHHhCCCCCCCcCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCchhhhhhhhhhcccCcch
Confidence 46544210 0 00 0 00123
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEEeccccCccc-----hhhhhhh-CCCceeeccccHHHHHHHHHHHHhc--CCeeEEee
Q 005820 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRR-FPTRCFDVGIAEQHAVTFAAGLACE--GLKPFCAI 471 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~-----l~~f~~~-~p~R~id~GIaE~~~v~~A~GlA~~--G~~p~~~t 471 (676)
.+++++++.|.++++.+|+++..++|+.+++. +..|+++ ||+||||+||+||+|+++|+|||++ |++||++|
T Consensus 345 a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~t 424 (654)
T PLN02790 345 ATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCAT 424 (654)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEe
Confidence 56778888999999999999999999988864 6789998 5999999999999999999999996 59999999
Q ss_pred chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCC
Q 005820 472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 550 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~ 550 (676)
|+.|+.|+++||+ ++|++++||++++++.|+ +|+||||||+++|+++||++|||+|++|+|++|+..++++++...++
T Consensus 425 f~~F~~~~~~~ir-~~al~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~~~~g 503 (654)
T PLN02790 425 FFVFTDYMRAAMR-LSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETAGAYKVAVTNRKR 503 (654)
T ss_pred cHHHHHHHHHHHH-HHHhcCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999984 569999999999988777 89999999999999999999999999999999999999999976689
Q ss_pred CeEEEecCCCCccccCCCCCCCCccccCceeEeecC-----CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCc
Q 005820 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG-----ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP 625 (676)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG-----~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P 625 (676)
|++||++|+..+.. +.. ....++.|+ ++++++ +|++||++|+++.+|++|++.|+++||+++|||++|++|
T Consensus 504 P~~irl~R~~~~~~--~~~-~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikp 579 (654)
T PLN02790 504 PTVLALSRQKVPNL--PGT-SIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWEL 579 (654)
T ss_pred CEEEEecCCCCCCC--CCC-cccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccch
Confidence 99999999875432 111 124567786 777774 799999999999999999999999999999999999999
Q ss_pred CcHHHHH---HHh-ccCCEEEEEcCCCCCCHHHH
Q 005820 626 LDHALIR---SLA-KSHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 626 ~d~e~i~---~~~-~~~~~vIvvEe~~~gG~gs~ 655 (676)
||++... +++ ++++.+|++|+++.+||++.
T Consensus 580 ld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~ 613 (654)
T PLN02790 580 FEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKY 613 (654)
T ss_pred hhhhHHHHHHhhhccccceEEEecCccchhHHHh
Confidence 9998754 666 77788999999998998763
No 13
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=6.1e-88 Score=778.73 Aligned_cols=503 Identities=26% Similarity=0.368 Sum_probs=430.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHh-hcc----C----CCCccccCcCchH---HHHHHHc
Q 005820 89 LSIRELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-VFN----A----PKDRILWDVGHQT---YPHKILT 155 (676)
Q Consensus 89 ~~~~~l~~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~-~~~----~----p~D~~i~s~gH~~---y~~~~l~ 155 (676)
|.+++|+++|+++|+++++|+. +++||+|++||++|++++||+ +|+ + ++||||||+||++ |++++++
T Consensus 3 ~~~~~l~~~a~~iR~~~~~~~~~~~~gH~g~~ls~~~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s~GH~~~~~Ya~l~~~ 82 (624)
T PRK05899 3 MDMELLQLLANAIRVLSIDAVQKANSGHPGMPMGAADIAYVLWTRFLRHDPKNPKWPNRDRFVLSAGHGSMLLYSLLHLA 82 (624)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEChhHHHHHHHHHHHc
Confidence 5678899999999999999996 589999999999999999996 443 2 3899999999999 9999999
Q ss_pred CC---hHHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEcCCcc
Q 005820 156 GR---RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAM 221 (676)
Q Consensus 156 G~---~~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viGDGa~ 221 (676)
|+ +++|.+||++++ ++|||++.+++++.+++|++|+++|+|+|+|+|.+++++ +++|||++|||++
T Consensus 83 G~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~ 162 (624)
T PRK05899 83 GYDLSIDDLKNFRQLGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDL 162 (624)
T ss_pred CCCCCHHHHHHhcCCCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchh
Confidence 99 899999999998 699999888899999999999999999999999998887 8999999999999
Q ss_pred cccchHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHH
Q 005820 222 TAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE 300 (676)
Q Consensus 222 ~eG~~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~ 300 (676)
++|++||||++|+.+++ |+++|+|||++ ++.+ +..... ..+
T Consensus 163 ~~g~~~Eal~~A~~~~L~~li~v~dnN~~-~~~~-----~~~~~~--------------------------------~~~ 204 (624)
T PRK05899 163 MEGISHEACSLAGHLKLGNLIVIYDDNRI-SIDG-----PTEGWF--------------------------------TED 204 (624)
T ss_pred hchHHHHHHHHHHHhCCCCEEEEEECCCC-cccc-----cccccc--------------------------------ccc
Confidence 99999999999999996 59999999984 3321 111000 022
Q ss_pred HHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCC
Q 005820 301 LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHG 380 (676)
Q Consensus 301 ~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~ 380 (676)
+. .+|++|||+++ .|||||+++|.++++++++ .++|++|+++|.||+|++++|+ ..+||+
T Consensus 205 ~~----------------~~~~a~G~~~~-~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~kg~g~~~~e~-~~~~H~ 264 (624)
T PRK05899 205 VK----------------KRFEAYGWHVI-EVDGHDVEAIDAAIEEAKA--STKPTLIIAKTIIGKGAPNKEG-THKVHG 264 (624)
T ss_pred HH----------------HHhccCCCeEE-EECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEeccCCccccC-CCcccC
Confidence 33 34999999998 5899999999999999986 3689999999999999999884 467998
Q ss_pred cccccCc--cc--------ccc--c-------------cch-----------hhhhHHHHHHHHHHHHHHcCCCEEEEec
Q 005820 381 VAKFDPA--TG--------KQF--K-------------SSA-----------RTQSYTTYFAEALIAEAEVDKDVVAIHA 424 (676)
Q Consensus 381 ~~~fd~~--~g--------~~~--~-------------~~~-----------~~~~~~~a~~~aL~~~~~~d~~iv~i~a 424 (676)
.++.+.. .. +.+ + ... ...+++++|+++|.+++++||+++++++
T Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~l~~~~~~v~vl~~ 344 (624)
T PRK05899 265 APLGAEEIAAAKKELGWDYEPFEVPEEVYAHWRKAKERGAKAEAEWNEKFAGEKVATRKASGKALNALAKALPELVGGSA 344 (624)
T ss_pred CCCCHHHHHHHHHHcCCCcccccCChHHHHHHHHhhhcCchhHHHHHHhhcccchHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 7542210 00 000 0 000 1224589999999999999999999999
Q ss_pred cccCccchhhhh------hhCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeechhHHHHHHHHHHHhhhcCCCCEEEE
Q 005820 425 AMGGGTGLNLFL------RRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFA 497 (676)
Q Consensus 425 D~~gs~~l~~f~------~~~p~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv 497 (676)
|+++++++..|. ++||+||||+||+|++|+++|+|||+.| ++||+++|++|++|+++||++. +++++||+++
T Consensus 345 D~~~~~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~-~~~~~pv~~v 423 (624)
T PRK05899 345 DLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLA-ALMKLPVIYV 423 (624)
T ss_pred CCccccCcccccccccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHH-HhcCCCEEEE
Confidence 999888877666 6899999999999999999999999999 9999999999999999999875 9999999999
Q ss_pred eecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccc
Q 005820 498 MDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE 576 (676)
Q Consensus 498 ~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~ 576 (676)
++++|+ +|.+|+|||+.+|+++|+++||++|++|+|++|++.+++++++..++|+|||++|+..+.. .+....+.++
T Consensus 424 ~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~~~~~~P~~ir~~r~~~~~~--~~~~~~~~~~ 501 (624)
T PRK05899 424 FTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANETAAAWKYALERKDGPSALVLTRQNLPVL--ERTAQEEGVA 501 (624)
T ss_pred EECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHHHcCCCCEEEEEeCCCCCCc--CCcccccccc
Confidence 999998 7889999999999999999999999999999999999999998548999999999764321 1110124677
Q ss_pred cCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHH---HHHHHh-ccCCEEEEEcCCCCCCH
Q 005820 577 VGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA---LIRSLA-KSHEVLITVEEGSIGGF 652 (676)
Q Consensus 577 ~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e---~i~~~~-~~~~~vIvvEe~~~gG~ 652 (676)
+|+ +++++|+|++||++|+++++|++|++.|+++||+++|||++|++|||++ .+...+ +.+..+|++|++..+||
T Consensus 502 ~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~ 580 (624)
T PRK05899 502 KGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGW 580 (624)
T ss_pred CCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccch
Confidence 886 8899999999999999999999999999999999999999999999998 355555 55567888898777887
Q ss_pred H
Q 005820 653 G 653 (676)
Q Consensus 653 g 653 (676)
.
T Consensus 581 ~ 581 (624)
T PRK05899 581 Y 581 (624)
T ss_pred h
Confidence 3
No 14
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=3.9e-87 Score=765.78 Aligned_cols=503 Identities=23% Similarity=0.315 Sum_probs=424.5
Q ss_pred HHHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHhh-cc----CC----CCccccCcCchH---HHHHHHcCC---h
Q 005820 95 KQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV-FN----AP----KDRILWDVGHQT---YPHKILTGR---R 158 (676)
Q Consensus 95 ~~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~~-~~----~p----~D~~i~s~gH~~---y~~~~l~G~---~ 158 (676)
++++++||+++++|+. .++||+|++||++|++++||.. ++ +| |||||+|+||++ |+.+++.|+ .
T Consensus 5 ~~~~~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS~GH~~~~lYa~l~~~G~~~~~ 84 (663)
T PRK12754 5 KELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPM 84 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHhcCCCccCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCCH
Confidence 5679999999999997 5889999999999999999854 32 33 799999999999 999999997 6
Q ss_pred HHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccchH
Q 005820 159 DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAY 227 (676)
Q Consensus 159 ~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~~~ 227 (676)
++|++|||.|+ ++|||+...+++..+++|++|++++.|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 85 e~L~~fr~~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~ 164 (663)
T PRK12754 85 EELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISH 164 (663)
T ss_pred HHHHHhccCCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHH
Confidence 89999999997 79999987788999999999999999999999999886 37899999999999999999
Q ss_pred HHHHHhhhcCCC-EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHH
Q 005820 228 EAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 306 (676)
Q Consensus 228 EAln~A~~~~~~-li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~ 306 (676)
||+++|+++++| ||+|+|||++ ++ +|++..+. .+++.++
T Consensus 165 EA~~~A~~~kL~nLi~ivD~N~~-~i-----dg~~~~~~--------------------------------~~~~~~r-- 204 (663)
T PRK12754 165 EVCSLAGTLKLGKLIAFYDDNGI-SI-----DGHVEGWF--------------------------------TDDTAMR-- 204 (663)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCC-cc-----Ccchhhcc--------------------------------CccHHHH--
Confidence 999999999965 8999999994 44 23222110 1345555
Q ss_pred HHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc---
Q 005820 307 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK--- 383 (676)
Q Consensus 307 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~--- 383 (676)
|++|||+++.+|||||+++|.+|+++++.. .++|++|+++|.||+|.+++|+. .+|||.++
T Consensus 205 --------------~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~-~~~Pt~I~~~T~~g~G~~~~e~~-~~~Hg~~l~~~ 268 (663)
T PRK12754 205 --------------FEAYGWHVIRGIDGHDADSIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAGT-HDSHGAPLGDA 268 (663)
T ss_pred --------------HHhcCCeEEeeECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeeeccCccccCCC-ccccCCCCCHH
Confidence 999999998548999999999999998853 47999999999999999988765 67898752
Q ss_pred ---------------ccCcc-----------ccc------------------------------ccc-------------
Q 005820 384 ---------------FDPAT-----------GKQ------------------------------FKS------------- 394 (676)
Q Consensus 384 ---------------fd~~~-----------g~~------------------------------~~~------------- 394 (676)
|...+ +++ ++.
T Consensus 269 ~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (663)
T PRK12754 269 EIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKL 348 (663)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhh
Confidence 11111 100 000
Q ss_pred --chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccc-----hhhhhhhCCCceeeccccHHHHHHHHHHHHh-cCCe
Q 005820 395 --SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLK 466 (676)
Q Consensus 395 --~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~-----l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~-~G~~ 466 (676)
..+...++++++++|.++++.+|+++++++|+.+|+. ...|+++||+|||++||+||+|+++|+|||+ .|++
T Consensus 349 ~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~ 428 (663)
T PRK12754 349 QANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFL 428 (663)
T ss_pred cccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccCCCCeEeeccchhhHHHHHhhHHhcCCCe
Confidence 0012356789999999999999999999999998875 5789899999999999999999999999999 6799
Q ss_pred eEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHH
Q 005820 467 PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAA 545 (676)
Q Consensus 467 p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al 545 (676)
||++||++|+.|+++||++. |++++||++++++.|+ +|+||||||++||+++||.+|||+|++|+|+.|+..+++.++
T Consensus 429 Pf~~tf~~F~~r~~~qir~~-a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~ 507 (663)
T PRK12754 429 PYTSTFLMFVEYARNAVRMA-ALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGV 507 (663)
T ss_pred EEEEeeHHHHHHHHHHHHHH-HHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHH
Confidence 99999999999999999865 9999999999999999 899999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeecCC---cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 546 AIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE---RVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 546 ~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~---dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
+..++|+|||++|++.+...... .....+..|+ +++++++ |++||++|+++.+|++|++.|+++||+++|||++|
T Consensus 508 ~~~~gP~yirl~R~~~p~~~~~~-~~~~~~~~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s 585 (663)
T PRK12754 508 ERQDGPTALILSRQNLAQQERTE-EQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPS 585 (663)
T ss_pred hCCCCCEEEEeCCCCCCCCCCcc-chhhhcccCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCc
Confidence 86689999999998754321111 0112344554 8888864 99999999999999999999999999999999999
Q ss_pred cCcCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHH
Q 005820 623 CKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 623 l~P~d~e---~i~~~~~~~-~~vIvvEe~~~gG~gs~v 656 (676)
++|||++ +...++.+. ...|++|.+...||...+
T Consensus 586 ~kp~d~q~~~y~~~il~~~~~~~v~iE~~~~~~w~~~~ 623 (663)
T PRK12754 586 TDAFDKQDAAYRESVLPKAVSARVAVEAGIADYWYKYV 623 (663)
T ss_pred cCcCCCCCHHHHHhcCccccccceEeecccccchhhhc
Confidence 9999986 444555443 245899998888888765
No 15
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=4.1e-87 Score=770.88 Aligned_cols=497 Identities=23% Similarity=0.347 Sum_probs=422.3
Q ss_pred HHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHh-hcc----CC----CCccccCcCchH---HHHHHHcCC---hH
Q 005820 96 QLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHY-VFN----AP----KDRILWDVGHQT---YPHKILTGR---RD 159 (676)
Q Consensus 96 ~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~-~~~----~p----~D~~i~s~gH~~---y~~~~l~G~---~~ 159 (676)
+.|++||+++++|+. .++||+|++||++|++++||+ +++ +| |||||+|+||.+ |+.+++.|+ .+
T Consensus 2 ~~~~~iR~~~~~~~~~a~~GH~g~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 2 KLANAIRHLAVDAIQKAKSGHPGAPLGAAPIAEVLWTKFLKFNPTNPKWINRDRFVLSNGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred hHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHhhcCCCCCCCCCCCCeEEEECccHHHHHHHHHHHcCCCCCHH
Confidence 468899999999997 588999999999999999985 343 33 799999999999 999999996 47
Q ss_pred HhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccchHH
Q 005820 160 KMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYE 228 (676)
Q Consensus 160 ~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~~~E 228 (676)
+|++|||.|+ ++|||+...+++..+++|++|++++.|+|+|+|.|+++ .+++|||++|||+++||.+||
T Consensus 82 ~L~~fr~~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~E 161 (653)
T TIGR00232 82 DLKQFRQLHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYE 161 (653)
T ss_pred HHHhcccCCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHH
Confidence 8999999997 79999987788999999999999999999999999873 478999999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHH
Q 005820 229 AMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE 307 (676)
Q Consensus 229 Aln~A~~~~~~-li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~ 307 (676)
|+++|++|++| |++|+|||++ ++.+. +..+. .+++..+
T Consensus 162 A~~~A~~~~L~nLi~ivd~N~~-~i~~~-----~~~~~--------------------------------~~~~~~~--- 200 (653)
T TIGR00232 162 VASLAGHLKLGKLIVLYDSNRI-SIDGA-----VDGSF--------------------------------TEDVAKR--- 200 (653)
T ss_pred HHHHHHHhCCCcEEEEEeCCCe-eeccc-----ccccc--------------------------------CccHHHH---
Confidence 99999999955 9999999994 44322 21110 0244444
Q ss_pred HHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc----
Q 005820 308 YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK---- 383 (676)
Q Consensus 308 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~---- 383 (676)
|++|||+++.+.||||+++|.+|++++++. .++|++|+++|+||+|++++|+. .+|||.+.
T Consensus 201 -------------~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~~-~~~P~~I~~~T~~g~G~~~~e~~-~~~H~~~~~~~~ 265 (653)
T TIGR00232 201 -------------FEAYGWEVLEVEDGHDLAAIDAAIEEAKAS-KDKPTLIEVTTTIGFGSPNKAGT-HGVHGAPLGDED 265 (653)
T ss_pred -------------HHhcCCcEEEeCCCCCHHHHHHHHHHHHhC-CCCCEEEEEEeeecccCcccCCC-CcccCCCCCHHH
Confidence 999999998433999999999999999863 25899999999999999988865 57898752
Q ss_pred --------------ccCcc-------------ccc--------------------------cc---------------cc
Q 005820 384 --------------FDPAT-------------GKQ--------------------------FK---------------SS 395 (676)
Q Consensus 384 --------------fd~~~-------------g~~--------------------------~~---------------~~ 395 (676)
|+..+ +++ +. ..
T Consensus 266 ~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 345 (653)
T TIGR00232 266 VKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGAKAEQEWNELFAAYKKKYPELAAEFTRRLSGELPADWDKKLPEFKAK 345 (653)
T ss_pred HHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhccCchhhhhhhhhhhcc
Confidence 22110 100 00 00
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhh-----hhhhCCCceeeccccHHHHHHHHHHHHh-cCCeeEE
Q 005820 396 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNL-----FLRRFPTRCFDVGIAEQHAVTFAAGLAC-EGLKPFC 469 (676)
Q Consensus 396 ~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~-----f~~~~p~R~id~GIaE~~~v~~A~GlA~-~G~~p~~ 469 (676)
....+++++++++|.++++.+|+++++++|+.+|++++. |.++||+||||+||+||+|+++|+|||+ .|++||+
T Consensus 346 ~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~ 425 (653)
T TIGR00232 346 LQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENPLGNYIHYGVREFAMGAIMNGIALHGGFKPYG 425 (653)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcCCCCeEeecccHHHHHHHHHHHHHcCCCeEEE
Confidence 112357788999999999999999999999998887755 8899999999999999999999999999 6799999
Q ss_pred eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhC
Q 005820 470 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAID 548 (676)
Q Consensus 470 ~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~ 548 (676)
+||++|++|+++||+. .|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|+.|+..++++++...
T Consensus 426 ~tf~~F~~r~~~~ir~-~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~ 504 (653)
T TIGR00232 426 GTFLMFVDYARPAIRL-AALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQ 504 (653)
T ss_pred EEhHHHHHHHHHHHHH-HHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcC
Confidence 9999999999999865 49999999999998888 899999999999999999999999999999999999999999667
Q ss_pred CCCeEEEecCCCCccccCCCCCCCCccccCceeEe--ecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcC
Q 005820 549 DRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRIL--IEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPL 626 (676)
Q Consensus 549 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl--~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~ 626 (676)
++|+|||++|++.+.. .+ .....+..|+ +++ ++|+|++||++|+++.+|++|++.|+++||+++|||++|++||
T Consensus 505 ~gP~~irl~r~~~~~~--~~-~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~ikpl 580 (653)
T TIGR00232 505 DGPTALILSRQNLPQL--EE-SSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSFDLF 580 (653)
T ss_pred CCcEEEEEcCCccCCC--Cc-ccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccCccc
Confidence 8999999999875332 11 1113456665 777 6789999999999999999999999999999999999999999
Q ss_pred cHH---HHHHHhccCCEEEEEcCCCCCCHH
Q 005820 627 DHA---LIRSLAKSHEVLITVEEGSIGGFG 653 (676)
Q Consensus 627 d~e---~i~~~~~~~~~vIvvEe~~~gG~g 653 (676)
|++ ++.+++++++.+|++|+|+.+||.
T Consensus 581 d~~~~~~~~~~~~~~~~vvtvEe~~~~g~~ 610 (653)
T TIGR00232 581 DKQDEEYRESVLPANVTRLAVEAGAADEWY 610 (653)
T ss_pred ccCCHHHHHHHhcccCceEEEecccHhHHH
Confidence 665 488889888899999999987775
No 16
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-81 Score=685.99 Aligned_cols=506 Identities=25% Similarity=0.369 Sum_probs=432.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHhhc-----cCC----CCccccCcCchH---HHHHHHcCC
Q 005820 91 IRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVF-----NAP----KDRILWDVGHQT---YPHKILTGR 157 (676)
Q Consensus 91 ~~~l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~~~-----~~p----~D~~i~s~gH~~---y~~~~l~G~ 157 (676)
.+..+++++.||-+.+++|.+ ++||+|.+||++++...||..| ++| |||||+|.||.+ |++++|+|.
T Consensus 3 ~~~~~~~~naiR~Ls~davqkAnSGHPG~pmG~A~ia~~L~~~~l~~nP~nP~W~nRDRFVLSaGHgSmllYsllhl~Gy 82 (663)
T COG0021 3 MKIDKLLANAIRFLSMDAVQKANSGHPGAPMGAADIAYVLWTRFLKHNPDNPKWINRDRFVLSAGHGSMLLYSLLHLTGY 82 (663)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHhcCCCCCCCCCCCccEEecCCchhHHHHHHHHHccC
Confidence 345788999999999999974 9999999999999999998542 245 899999999999 999999997
Q ss_pred ---hHHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEcCCcccc
Q 005820 158 ---RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTA 223 (676)
Q Consensus 158 ---~~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viGDGa~~e 223 (676)
.|+|+.|||+++ .+|||.....++....||.||+||+.|+|||+|.++++. |+.+||++|||+++|
T Consensus 83 ~ls~edLk~FRQ~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmE 162 (663)
T COG0021 83 DLSLEDLKNFRQLGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLME 162 (663)
T ss_pred CCCHHHHHhhccCCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhc
Confidence 589999999998 589999877899999999999999999999999987753 579999999999999
Q ss_pred cchHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHH
Q 005820 224 GQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELA 302 (676)
Q Consensus 224 G~~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 302 (676)
|++|||..+|++++ .+||+|.|+|+ +|+ ||.+..+ . .+++.
T Consensus 163 Gvs~EA~slAG~l~L~kLIvlyD~N~-Isi-----DG~~~~~--f------------------------------~ed~~ 204 (663)
T COG0021 163 GVSHEAASLAGHLKLGKLIVLYDSND-ISI-----DGDTSLS--F------------------------------TEDVA 204 (663)
T ss_pred ccHHHHHHHHhhcCCCcEEEEEeCCC-cee-----ccCcccc--c------------------------------chhHH
Confidence 99999999999998 78999999999 675 5544311 0 15666
Q ss_pred HHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc
Q 005820 303 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (676)
Q Consensus 303 ~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~ 382 (676)
.+ ||++||+++..+||||+++|.+|+++|+.. .++|++|+|+|+.|+|.+..|+ ..++||.+
T Consensus 205 ~R----------------feAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~-~dkPtlI~~kTiIG~Gsp~keg-t~~~HGap 266 (663)
T COG0021 205 KR----------------FEAYGWNVIRVIDGHDLEAIDKAIEEAKAS-TDKPTLIIVKTIIGKGSPNKEG-THKVHGAP 266 (663)
T ss_pred HH----------------HHhcCCeEEEecCCCCHHHHHHHHHHHHhc-CCCCeEEEEEeeeecCCCCcCC-CccccCCC
Confidence 66 999999999899999999999999999974 5799999999999999887664 47899987
Q ss_pred c------------------ccCc------------cccc--------------ccc------------------------
Q 005820 383 K------------------FDPA------------TGKQ--------------FKS------------------------ 394 (676)
Q Consensus 383 ~------------------fd~~------------~g~~--------------~~~------------------------ 394 (676)
+ |... .++. ..+
T Consensus 267 Lg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~ 346 (663)
T COG0021 267 LGEEEVAAAKKALGWEPEPFEVPEEVYAAFRAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPK 346 (663)
T ss_pred CCHHHHHHHHHHhCCCCCceecCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhcccCchhHHHhhhh
Confidence 4 1110 1100 000
Q ss_pred ---chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhh-hhCCCceeeccccHHHHHHHHHHHHhcC-
Q 005820 395 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFL-RRFPTRCFDVGIAEQHAVTFAAGLACEG- 464 (676)
Q Consensus 395 ---~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~-~~~p~R~id~GIaE~~~v~~A~GlA~~G- 464 (676)
+.+....|++..++|..+.+..|.++..+||+.+|+.+ ..|. +.|++|+|.+||+|++|.++++|||++|
T Consensus 347 ~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg 426 (663)
T COG0021 347 FEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGG 426 (663)
T ss_pred hcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcC
Confidence 01124668889999999999999999999999999864 2454 6788999999999999999999999986
Q ss_pred CeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 465 LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 465 ~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
++||..||..|..++..+|+ .+|++++||++|.+|.++ +|+||||||++|+++.+|++||+.|++|+|+.|...+|+.
T Consensus 427 ~~pyggTFlvFsdY~r~AiR-laALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~ 505 (663)
T COG0021 427 FIPYGGTFLVFSDYARPAVR-LAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPADANETAAAWKY 505 (663)
T ss_pred ceeecceehhhHhhhhHHHH-HHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecCChHHHHHHHHH
Confidence 69999999999999999875 789999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeec----CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q 005820 544 AAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIE----GERVALLGYGTAVQSCLAASALLESNGLRLTVAD 619 (676)
Q Consensus 544 al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~e----G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId 619 (676)
|+.+.++|+++.++|++++.++-. ........+|++++ +.|++||++||+|+.|++|++.|+++|++++||+
T Consensus 506 Al~~~~gPt~LiltRQnlp~l~~t----~~~~~~kGaYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS 581 (663)
T COG0021 506 ALERKDGPTALILTRQNLPVLERT----DLEGVAKGAYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVS 581 (663)
T ss_pred HHhcCCCCeEEEEecCCCCccCCC----ccccccCccEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEe
Confidence 999889999999999997654211 12223455699988 4799999999999999999999998899999999
Q ss_pred ccccCcCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHHH
Q 005820 620 ARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHVV 657 (676)
Q Consensus 620 ~~~l~P~d~e---~i~~~~~~~-~~vIvvEe~~~gG~gs~v~ 657 (676)
++|+..|+++ +.++++... ...|.||.+...||..++-
T Consensus 582 ~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~~~W~ky~g 623 (663)
T COG0021 582 MPSFELFEKQDEEYRESVLPGAVTARVAIEAGSALGWYKYVG 623 (663)
T ss_pred ccchHHHHcCCHHHHHhhccCCccceEEEEeccccchhhhcC
Confidence 9999998764 445565443 3478999999999998775
No 17
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=2.2e-80 Score=715.68 Aligned_cols=556 Identities=22% Similarity=0.249 Sum_probs=443.8
Q ss_pred ccccccccchHHHhhccCCCccccccccccccCCCCCCCCcccCCCCcccccc-cCHHHHHHHHHHHHHHHHHHhhh-c-
Q 005820 36 FSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKN-LSIRELKQLADELRADVIFNVSK-T- 112 (676)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~l~~la~~iR~~i~~~v~~-~- 112 (676)
-||+++++..|+++.... .. ....|||++||........ =+.+-++++++.||+++++|+.+ +
T Consensus 30 ~~~~~~~~~~~~~~~~~~-------------~~-~~~~t~y~nti~~~~~~~~pgd~~~~~~~a~~iR~~a~~mv~~A~~ 95 (889)
T TIGR03186 30 AQYLLAQLAAHAARLGLA-------------PP-AAGATPYVNTIAVDQEPPYPGDLQLEERLAAILRWNALAMVVRANR 95 (889)
T ss_pred HHHHHHHHHHHHHHcCCC-------------CC-CCCCCCCccCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367888887776653322 11 2234777887764433221 12333578899999999999964 5
Q ss_pred -----CCCCCCCccHHHHHHHHHh-hccCC-----CCccccCcCchH---HHHHHHcCC--hHHhhhhHhc--C-CCCCC
Q 005820 113 -----GGHLGSSLGVIELTVALHY-VFNAP-----KDRILWDVGHQT---YPHKILTGR--RDKMHTMRQT--D-GLSGF 173 (676)
Q Consensus 113 -----~GH~~sslg~~el~~aL~~-~~~~p-----~D~~i~s~gH~~---y~~~~l~G~--~~~l~~~r~~--~-gl~g~ 173 (676)
+||+|+++|+++|+.+||. +|+.| +| +|+|+||.+ |+.+++.|+ .++|.+|||. + ++++|
T Consensus 96 ~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD-~VlskGHasp~lYA~l~l~G~l~~e~L~~fRq~~~~~gl~~~ 174 (889)
T TIGR03186 96 AYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGD-LVYFQPHSAPGVYARAFLEGFLSDAQLAHYRQEIAGPGLCSY 174 (889)
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCC-EEEECCchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCC
Confidence 6999999999999999984 44422 56 799999999 999999997 6899999997 4 58888
Q ss_pred CCCCC-CCCcccCCCccchhhHHHHHHHHHchhcC-------CCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEE
Q 005820 174 TKRSE-SEYDCFGTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVIL 244 (676)
Q Consensus 174 ~~~~e-s~~~~~g~G~~G~~ls~A~G~AlA~~~~~-------~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv 244 (676)
|++.. +.+..|.+|++|+|+++|+|||++.|+.. .+++|||++||||++||++|||+.+|++++ .|||+|+
T Consensus 175 phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~Iv 254 (889)
T TIGR03186 175 PHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVI 254 (889)
T ss_pred CCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence 87755 34688999999999999999999988443 379999999999999999999999999988 8999999
Q ss_pred ECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhc
Q 005820 245 NDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL 324 (676)
Q Consensus 245 ~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~ 324 (676)
|+|++ + .||++..++.+ ++++.++ |++|
T Consensus 255 D~N~~-q-----lDG~t~~~~~~------------------------------~e~l~~k----------------f~a~ 282 (889)
T TIGR03186 255 NCNLQ-R-----LDGPVRGNGRI------------------------------IDELESQ----------------FAGA 282 (889)
T ss_pred eCCCC-c-----cCCcccccccc------------------------------chHHHHH----------------HHhC
Confidence 99995 3 26666544432 1344444 6666
Q ss_pred CceeeccC--------------------------------------------------------------------CCCC
Q 005820 325 GLYYIGPV--------------------------------------------------------------------DGHN 336 (676)
Q Consensus 325 G~~~~~~v--------------------------------------------------------------------dGhd 336 (676)
||+++.++ +|||
T Consensus 283 GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD 362 (889)
T TIGR03186 283 GWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHD 362 (889)
T ss_pred CCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCC
Confidence 66665332 7999
Q ss_pred HHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccccc---------------------------Cccc
Q 005820 337 VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFD---------------------------PATG 389 (676)
Q Consensus 337 ~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd---------------------------~~~g 389 (676)
+++|.+|+++|++. .++|++|.++|+||+|.+.+....+.+|+..+++ +..+
T Consensus 363 ~~~i~~A~~~A~~~-~~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~~g~~~~de~~~~~~~~~~~~~ 441 (889)
T TIGR03186 363 ARKLYAAYDRAVRH-EGRPTVILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDRFRLPLSDADVEQLKFYKPDED 441 (889)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHHcCCCCChHHhhcccccCCCCC
Confidence 99999999988864 4799999999999999987766556788844311 1000
Q ss_pred ----------------c----------c--ccc-----------chhhhhHHHHHHHHHHHHHHc---CCCEEEEecccc
Q 005820 390 ----------------K----------Q--FKS-----------SARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMG 427 (676)
Q Consensus 390 ----------------~----------~--~~~-----------~~~~~~~~~a~~~aL~~~~~~---d~~iv~i~aD~~ 427 (676)
. + .+. .....+.+.+|.+.|..+++. .++||.+.+|+.
T Consensus 442 s~~~~~l~~~r~~l~g~~p~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a 521 (889)
T TIGR03186 442 SAEMRYLHARRAALGGYLPRRRTAATHALAVPALPSWGRFALDAEGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEA 521 (889)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCccccCCCCcchhhhhhccCCCCcccHHHHHHHHHHHHHhCccccCCEEEeCCccc
Confidence 0 0 000 113356788999997777664 578999999999
Q ss_pred Cccchh-------------------------hhhhhCCCceeeccccHHHHHH--HHHHHHhc----CCeeEEeechhHH
Q 005820 428 GGTGLN-------------------------LFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSFM 476 (676)
Q Consensus 428 gs~~l~-------------------------~f~~~~p~R~id~GIaE~~~v~--~A~GlA~~----G~~p~~~t~~~Fl 476 (676)
.+|||+ .+++.+|+|||++||+||+|++ +|+|+|++ |++||+.+|+.|.
T Consensus 522 ~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~ 601 (889)
T TIGR03186 522 RTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFG 601 (889)
T ss_pred ccCCchhhhccccccCcccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhH
Confidence 998553 3457789999999999999999 99999998 7899999999995
Q ss_pred -HHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----h-C
Q 005820 477 -QRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----I-D 548 (676)
Q Consensus 477 -~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~-~ 548 (676)
+|++|||++. ++++.+|++++.++|+ .|.+|+|||..+|+++++.+||++|+.|+|+.|+..+++.+++ . .
T Consensus 602 ~~Ra~Dqir~a-~~~~a~v~lvG~~aG~tTlg~eG~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~ 680 (889)
T TIGR03186 602 FQRIGDLIWAA-ADQRARGFLIGATSGKTTLGGEGLQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQR 680 (889)
T ss_pred hhhHHHHHHHH-hhcCCCcEEEEECCCccCCCCCcccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 8999999877 9999999999999998 5889999999999999999999999999999999999998765 1 3
Q ss_pred CCCeEEEecCCCCccccCCCCCCCCccccCc--e-eEee----cCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEc
Q 005820 549 DRPSCFRYPRGNGIGVELPPGNKGIPLEVGK--G-RILI----EGERVALLGYGTAVQSCLAASALLESN-GLRLTVADA 620 (676)
Q Consensus 549 ~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk--~-~vl~----eG~dv~Iva~Gs~v~~aleAa~~L~~~-Gi~v~VId~ 620 (676)
++|+|||+.|.+.+...+++. ....++.|+ + ++++ +|+||+||++|.++++|++|+++|+++ ||+++|||+
T Consensus 681 ~gp~YlRl~r~~~~~p~~~~~-~~~~~~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv 759 (889)
T TIGR03186 681 DEFYYLTVTNENYAQPSLPED-RLDAVRRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSV 759 (889)
T ss_pred CceEEEEeCCCCCCCCCcCCC-cccchhcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEEC
Confidence 689999999986532222321 002244444 6 8888 578999999999999999999999987 999999999
Q ss_pred cccCcCcHHHHHHHhccCCEEEEEcCC---C-CCCHHH-------------HHHHHHHHc
Q 005820 621 RFCKPLDHALIRSLAKSHEVLITVEEG---S-IGGFGS-------------HVVQFLAQD 663 (676)
Q Consensus 621 ~~l~P~d~e~i~~~~~~~~~vIvvEe~---~-~gG~gs-------------~v~~~l~~~ 663 (676)
.|+||||++.+. +++++.++++||+ + .|||++ .|+++|.+.
T Consensus 760 ~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~v~ggLg~~~~p~va~~D~~~avae~i~~~ 817 (889)
T TIGR03186 760 TSFTELARDGRA--AERAQRLGDAERPPSPHVAQALGATQGPVIAATDYVRAVPELIRAY 817 (889)
T ss_pred CCCCHhHHHHHH--HHHhCCcccccccccccHhhhhCCCCCCeeeecchHHHHHHHHHhh
Confidence 999999999997 6788899999997 5 699999 999999885
No 18
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=9.8e-78 Score=693.84 Aligned_cols=554 Identities=22% Similarity=0.248 Sum_probs=449.0
Q ss_pred cccccccchHHHhhccCCCccccccccccccCCCCCCCCcccCCCCcccccccCHHHH-HHHHHHHHHHHHHHhh-hcC-
Q 005820 37 SHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIREL-KQLADELRADVIFNVS-KTG- 113 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l-~~la~~iR~~i~~~v~-~~~- 113 (676)
+|+++++..|+++.... . .....|||++||..-.+.+-=...++ +++++.||++++.||. +++
T Consensus 37 ~~~~~~l~~~~~~~~~~-------------~-~~~~~t~y~nti~~~~~~~~pg~~~~e~~i~~~iR~~a~~mv~~An~~ 102 (891)
T PRK09405 37 HYLLEQLLERAREKGVS-------------L-PASATTPYINTIPVEEEPEYPGDLELERRIRSYIRWNAAAMVLRANKK 102 (891)
T ss_pred HHHHHHHHHHHHHcCCC-------------C-CCCCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 67777777765543221 1 11234888999876655443333333 5568999999999996 344
Q ss_pred -----CCCCCCccHHHHHHHHHh-hccCC-----CCccccCcCchH---HHHHHHcCC--hHHhhhhHhc--C-CCCCCC
Q 005820 114 -----GHLGSSLGVIELTVALHY-VFNAP-----KDRILWDVGHQT---YPHKILTGR--RDKMHTMRQT--D-GLSGFT 174 (676)
Q Consensus 114 -----GH~~sslg~~el~~aL~~-~~~~p-----~D~~i~s~gH~~---y~~~~l~G~--~~~l~~~r~~--~-gl~g~~ 174 (676)
||+++++|+++|+.+||. .|+.| +| +|+|+||.+ |+.+++.|+ .++|.+|||. | +|++||
T Consensus 103 ~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~g~gl~syP 181 (891)
T PRK09405 103 DLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGD-LVFFQGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYP 181 (891)
T ss_pred CCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCC-EEEECchHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCC
Confidence 999999999999999985 45432 56 899999999 999999997 6899999995 4 799999
Q ss_pred CCCC-CCCcccCCCccchhhHHHHHHHHHchh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEE
Q 005820 175 KRSE-SEYDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILN 245 (676)
Q Consensus 175 ~~~e-s~~~~~g~G~~G~~ls~A~G~AlA~~~-------~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~ 245 (676)
++.. +++..|.+|++|+|++.|+|+|++.|+ .+.+++||||+||||++||.+|||+..|++++ .|||+|+|
T Consensus 182 hp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD 261 (891)
T PRK09405 182 HPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVIN 261 (891)
T ss_pred CcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9865 446789999999999999999999994 45689999999999999999999999999987 89999999
Q ss_pred CCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcC
Q 005820 246 DNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG 325 (676)
Q Consensus 246 dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G 325 (676)
+|+| + .||++..++.+ ++++..+ |+++|
T Consensus 262 ~N~q-~-----lDG~v~~~~~~------------------------------~~~l~~~----------------f~a~G 289 (891)
T PRK09405 262 CNLQ-R-----LDGPVRGNGKI------------------------------IQELEGI----------------FRGAG 289 (891)
T ss_pred CCCc-c-----cCCcccccccc------------------------------chhHHHH----------------HhhCC
Confidence 9995 3 37776654432 2455555 88888
Q ss_pred ceeeccC-------------------------C-------------------------------------------CCCH
Q 005820 326 LYYIGPV-------------------------D-------------------------------------------GHNV 337 (676)
Q Consensus 326 ~~~~~~v-------------------------d-------------------------------------------Ghd~ 337 (676)
|+++.++ | |||+
T Consensus 290 W~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~ 369 (891)
T PRK09405 290 WNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDP 369 (891)
T ss_pred CEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCH
Confidence 8877432 4 9999
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEEEeccCCCc-chhhhhhcccCCccccc------------C---------------ccc
Q 005820 338 DDLVAILEEVKNTKTTGPVLIHVVTEKGRGY-PYAEKAADKYHGVAKFD------------P---------------ATG 389 (676)
Q Consensus 338 ~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~-~~ae~~~~~~H~~~~fd------------~---------------~~g 389 (676)
++|.+|++++++. .++|++|.++|+||+|. +.+|+ .+.+|+..+.+ . +.+
T Consensus 370 ~~i~~A~~~A~~~-~~~PtvIia~TvkG~G~~~~~e~-~~~~H~~~~l~~e~~~~~r~~~g~~~~d~~~~~~~~~~~~~~ 447 (891)
T PRK09405 370 RKVYAAYKAAVEH-KGQPTVILAKTIKGYGMGEAGEG-KNIAHQVKKLDLDDLKHFRDRFNIPISDEQLEKLPYYKPGED 447 (891)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEEeceecCCCCcccCC-CccccCCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCC
Confidence 9999999988864 47899999999999999 55554 46778752211 0 000
Q ss_pred ----c---------------------cc--c-----------cchhhhhHHHHHHHHHHHHHHc---CCCEEEEeccccC
Q 005820 390 ----K---------------------QF--K-----------SSARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGG 428 (676)
Q Consensus 390 ----~---------------------~~--~-----------~~~~~~~~~~a~~~aL~~~~~~---d~~iv~i~aD~~g 428 (676)
+ ++ + +.....+.+.+|++.|.++++. .++||.+.+|+..
T Consensus 448 s~e~~~l~~~r~~l~g~~p~r~~~~~~~~~P~~~~~~~~~~~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~ 527 (891)
T PRK09405 448 SPEIKYLHERRKALGGYLPARRPKFEPLEVPALSAFEALLKGSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEAR 527 (891)
T ss_pred CHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHhhccCCCCcccHHHHHHHHHHHHHhccccCCcEEEecccccc
Confidence 0 00 0 0013457789999999999996 8999999999999
Q ss_pred ccch-------------------------hhhhhhCCCceeeccccHHHHHH--HHHHHHhc----CCeeEEeechhH-H
Q 005820 429 GTGL-------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSF-M 476 (676)
Q Consensus 429 s~~l-------------------------~~f~~~~p~R~id~GIaE~~~v~--~A~GlA~~----G~~p~~~t~~~F-l 476 (676)
+|++ ..|++.||+|||++||+||+|++ +|+|+|++ |++||+.+|+.| .
T Consensus 528 t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~ 607 (891)
T PRK09405 528 TFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESKDGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGF 607 (891)
T ss_pred ccCcchhhccccccccccccccccccHHHHHHHHcCCCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhh
Confidence 8877 46788999999999999999999 99999988 789999999999 6
Q ss_pred HHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCC--
Q 005820 477 QRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDR-- 550 (676)
Q Consensus 477 ~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~-- 550 (676)
+|++|||++.+++++.+|+++++++|. ++.+|.|||..+|+.+++.+||++||.|+|+.|+..+++.+++ ...+
T Consensus 608 ~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG~qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~ 687 (891)
T PRK09405 608 QRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEGLQHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENV 687 (891)
T ss_pred hhHHHHHHHHHHhcCCCeEEEEECccccCCCCcccCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCe
Confidence 899999999999999999999999998 6889999999999999999999999999999999999999876 1234
Q ss_pred CeEEEecCCCCccccCCCCCCCCccccCce-eEeecCC------cEEEEEechhHHHHHHHHHHHHh-CCCcEEEEEccc
Q 005820 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKG-RILIEGE------RVALLGYGTAVQSCLAASALLES-NGLRLTVADARF 622 (676)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~-~vl~eG~------dv~Iva~Gs~v~~aleAa~~L~~-~Gi~v~VId~~~ 622 (676)
|.|+|+...+... |...++..+.++|+ +++++|. ||+||++|.++++|++|+++|++ .||+++|||+.|
T Consensus 688 ~yYlrl~ne~~~~---~~~pe~~~~~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~S 764 (891)
T PRK09405 688 FYYITVMNENYHQ---PAMPEGAEEGILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTS 764 (891)
T ss_pred EEEEEeCCCCCCC---CCCCcccccccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCC
Confidence 6778876222221 22123467889997 9999976 89999999999999999999998 799999999999
Q ss_pred cCcCcHHHHHHHh---------ccCCEEEEEcCCCCCCHH-------HHHHHHHHHc
Q 005820 623 CKPLDHALIRSLA---------KSHEVLITVEEGSIGGFG-------SHVVQFLAQD 663 (676)
Q Consensus 623 l~P~d~e~i~~~~---------~~~~~vIvvEe~~~gG~g-------s~v~~~l~~~ 663 (676)
+||||++.+.... +++..|+++|++ .||++ +.|++.|++.
T Consensus 765 ikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ee~-~gG~~Vtv~D~~~aVae~la~~ 820 (891)
T PRK09405 765 FNELARDGQDVERWNMLHPTEEPRVPYVTQVLKG-AEGPVVAATDYMKLFAEQIRAF 820 (891)
T ss_pred CCHhhHHHHHHHHHhhcCcccccccchhhhhhcc-cCCcEEEecchHHHHHHHHHHh
Confidence 9999999987755 667788888888 77887 8899998875
No 19
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=7.4e-77 Score=689.48 Aligned_cols=526 Identities=23% Similarity=0.266 Sum_probs=422.1
Q ss_pred cccccccchHHHhhccCCCccccccccccccCCCCCCCCcccCCCCcccccccC-HHHHHHHHHHHHHHHHHHhhh-cC-
Q 005820 37 SHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLS-IRELKQLADELRADVIFNVSK-TG- 113 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~-~~~l~~la~~iR~~i~~~v~~-~~- 113 (676)
||+++++..|+++.... +. ....|||++||....+..-=. .+-++++++.||++++.||.+ +.
T Consensus 45 ~~~~~~~~~~~~~~~~~-------------~~-~~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~a~~mv~~A~~~ 110 (896)
T PRK13012 45 RYLLDRLLERAAARGIA-------------LP-GLLTTPYVNTIPVDQQPPYPGDLALEERLAAIIRWNALAMVVRANRA 110 (896)
T ss_pred HHHHHHHHHHHHHcCCC-------------CC-CCCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67777776655543221 11 123478888887554433211 222456899999999999963 55
Q ss_pred -----CCCCCCccHHHHHHHHHhh-cc-C----CCCccccCcCchH---HHHHHHcCC--hHHhhhhHhc---CCCCCCC
Q 005820 114 -----GHLGSSLGVIELTVALHYV-FN-A----PKDRILWDVGHQT---YPHKILTGR--RDKMHTMRQT---DGLSGFT 174 (676)
Q Consensus 114 -----GH~~sslg~~el~~aL~~~-~~-~----p~D~~i~s~gH~~---y~~~~l~G~--~~~l~~~r~~---~gl~g~~ 174 (676)
||+|+++|+++|+.+||.. |+ + .+| +|+|+||.+ |+.+++.|+ .++|.+|||. +|+++||
T Consensus 111 ~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D-~V~skGHasp~lYA~~~l~G~l~~e~L~~fR~~~~~~gl~~~P 189 (896)
T PRK13012 111 YGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGD-LVYFQPHSAPGIYARAFLEGRLSEEQLDHFRQEIGGPGLSSYP 189 (896)
T ss_pred CCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCC-EEEECcchHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCCC
Confidence 9999999999999999854 43 1 379 699999999 999999997 6899999998 4699999
Q ss_pred CCCCC-CCcccCCCccchhhHHHHHHHHHchh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEE
Q 005820 175 KRSES-EYDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILN 245 (676)
Q Consensus 175 ~~~es-~~~~~g~G~~G~~ls~A~G~AlA~~~-------~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~ 245 (676)
++... .+..|.+|++|+|++.|+|+|++.|+ ...+++||||+||||++||++|||+.+|++++ .|||+|+|
T Consensus 190 ~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD 269 (896)
T PRK13012 190 HPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVIN 269 (896)
T ss_pred CcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEE
Confidence 98764 46889999999999999999999993 45679999999999999999999999999987 89999999
Q ss_pred CCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcC
Q 005820 246 DNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG 325 (676)
Q Consensus 246 dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G 325 (676)
+|+| + .||++..++.+ ++++..+ |+++|
T Consensus 270 ~N~~-~-----lDG~v~~~~~~------------------------------~~~l~~~----------------f~a~G 297 (896)
T PRK13012 270 CNLQ-R-----LDGPVRGNGRI------------------------------IQELEAL----------------FRGAG 297 (896)
T ss_pred CCCc-c-----ccCcccccccc------------------------------chHHHHH----------------HHhCC
Confidence 9995 3 37776654432 2566655 89999
Q ss_pred ceeeccC-------------------------C-------------------------------------------CCCH
Q 005820 326 LYYIGPV-------------------------D-------------------------------------------GHNV 337 (676)
Q Consensus 326 ~~~~~~v-------------------------d-------------------------------------------Ghd~ 337 (676)
|+++.++ | |||+
T Consensus 298 W~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~ 377 (896)
T PRK13012 298 WNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDP 377 (896)
T ss_pred CEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCH
Confidence 9988543 8 9999
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc--------------------------ccC-ccc-
Q 005820 338 DDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK--------------------------FDP-ATG- 389 (676)
Q Consensus 338 ~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~--------------------------fd~-~~g- 389 (676)
++|.+|++++++. .++|++|.++|+||+|.+.+..+.+.+|+..+ |.. +..
T Consensus 378 ~~i~~A~~~a~~~-~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~~g~p~~d~~~~~~pf~~p~~~~ 456 (896)
T PRK13012 378 RKVYAAYAAAVRH-KGQPTVILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDRFRLPLSDEQLEQLPFYKPAEDS 456 (896)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHHcCCCCChhhhccCCCcCCcccc
Confidence 9999999988864 46899999999999999844334467887321 110 000
Q ss_pred ----------c--------------cc--c-----------cchhhhhHHHHHHHHHHHHHHc---CCCEEEEeccccCc
Q 005820 390 ----------K--------------QF--K-----------SSARTQSYTTYFAEALIAEAEV---DKDVVAIHAAMGGG 429 (676)
Q Consensus 390 ----------~--------------~~--~-----------~~~~~~~~~~a~~~aL~~~~~~---d~~iv~i~aD~~gs 429 (676)
+ ++ + ......+.+.+|++.|.++++. .++||.+++|+..+
T Consensus 457 ~~~~~l~~r~~~l~g~~P~r~~~~~~l~~p~~~~~~~~~~~~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t 536 (896)
T PRK13012 457 PEMRYLHARRAALGGYLPRRRTAAPPLPVPPLSAFAQFALGAGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEART 536 (896)
T ss_pred HHHHHHHHHHHHhcCcCCcccccccccCCCchhhHHHhhcccCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccc
Confidence 0 00 0 0112356789999999999987 89999999999988
Q ss_pred cch-------------------------hhhhhhCCCceeeccccHHHHHH--HHHHHHhc----CCeeEEeechhH-HH
Q 005820 430 TGL-------------------------NLFLRRFPTRCFDVGIAEQHAVT--FAAGLACE----GLKPFCAIYSSF-MQ 477 (676)
Q Consensus 430 ~~l-------------------------~~f~~~~p~R~id~GIaE~~~v~--~A~GlA~~----G~~p~~~t~~~F-l~ 477 (676)
||+ ..|++.||+|||++||+|++|++ +|+|+|++ |++||+.+|+.| .+
T Consensus 537 ~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~ 616 (896)
T PRK13012 537 FGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAKDGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQ 616 (896)
T ss_pred cCcccccccccccccccccccccchhHHhhhhhCCCCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHH
Confidence 765 23557899999999999999988 88888776 679999999999 69
Q ss_pred HHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh-----CCCC
Q 005820 478 RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI-----DDRP 551 (676)
Q Consensus 478 ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~-----~~~P 551 (676)
|++||+.+.++++..+|+++++++|. +|++|+|||..+|++++|.+||++|+.|+|+.|+..+++.++++ .+.|
T Consensus 617 R~~Dqir~a~~~~~~~vlig~T~gg~tlg~dG~THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p 696 (896)
T PRK13012 617 RVGDLIWAAADQRARGFLLGATAGRTTLGGEGLQHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVF 696 (896)
T ss_pred HHHHHHHHHHhcccCCeEEEEeCcccccCCCCCCCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCe
Confidence 99999999989999999999999998 79999999999999999999999999999999999999998853 2579
Q ss_pred eEEEecCCCCccccCCCCCCCCccccCceeEee---cCCcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEccccCcCc
Q 005820 552 SCFRYPRGNGIGVELPPGNKGIPLEVGKGRILI---EGERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLD 627 (676)
Q Consensus 552 ~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~---eG~dv~Iva~Gs~v~~aleAa~~L~~~-Gi~v~VId~~~l~P~d 627 (676)
+|||+.|++.+...+|+.. ...+..|+ ++++ +|+|++||++|+++++|++|+++|+++ ||+++|||+.|++|||
T Consensus 697 ~YIrL~r~~~~~p~~~~~~-~~~i~kG~-y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd 774 (896)
T PRK13012 697 YYLTVMNENYAQPALPEGA-EEGILKGM-YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELR 774 (896)
T ss_pred EEEEecCCCCCCCCCCccc-hhccccCc-EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhH
Confidence 9999999875422334321 23344455 6673 467999999999999999999999999 9999999999999999
Q ss_pred HHHHH
Q 005820 628 HALIR 632 (676)
Q Consensus 628 ~e~i~ 632 (676)
++.+.
T Consensus 775 ~d~i~ 779 (896)
T PRK13012 775 RDGLA 779 (896)
T ss_pred HHHHH
Confidence 99873
No 20
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=100.00 E-value=9.3e-75 Score=581.72 Aligned_cols=270 Identities=63% Similarity=1.005 Sum_probs=198.5
Q ss_pred ccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcC
Q 005820 77 LDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTG 156 (676)
Q Consensus 77 l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G 156 (676)
|++|++|.|+|+|+.+||++||+|||.+|++.++++|||++|+||+|||++||||+||.|+|+||||+|||+|+||+|||
T Consensus 1 L~~I~~p~dlk~ls~~eL~~La~eiR~~ii~~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 1 LDKINSPEDLKKLSIEELEQLAQEIREFIIETVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp GGG-SSHHHHTTS-GGGHHHHHHHHHHHHHHHCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred CCCCCCHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhc
Q 005820 157 RRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL 236 (676)
Q Consensus 157 ~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~ 236 (676)
|++.|.|+||.||++|||++.||+||.|++||+|++||+|+|||.|+++++++++||||||||+++.||+|||||+|+..
T Consensus 81 R~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~ 160 (270)
T PF13292_consen 81 RRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHL 160 (270)
T ss_dssp TCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHH
T ss_pred cHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCC
Q 005820 237 DSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGS 316 (676)
Q Consensus 237 ~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~ 316 (676)
+.|++||+|||+| |+ +++||+++++|+++++++.|+.+|+..+.+.+.+ ..+.+...++++.++++ .+
T Consensus 161 ~~~liVILNDN~m-SI--------s~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~-~~~~~~~~r~~~s~K~~-~~- 228 (270)
T PF13292_consen 161 KSNLIVILNDNEM-SI--------SPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKI-PPIEEFAKRIKESLKGF-SP- 228 (270)
T ss_dssp T-SEEEEEEE-SB-SS--------SB--SSHCCC----------------------------------------------
T ss_pred CCCEEEEEeCCCc-cc--------CCCcchHHHHHHhccchhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhh-hH-
Confidence 9999999999995 54 5789999999999999999999999999999877 67788888989988888 43
Q ss_pred ccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEe
Q 005820 317 GSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 317 ~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 362 (676)
++||++||.|++|+||||+++|.++|+++|+. ++|++|||.|
T Consensus 229 --~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~--~gPvllHV~T 270 (270)
T PF13292_consen 229 --NLFEELGFDYIGPIDGHDLEELIEVLENAKDI--DGPVLLHVIT 270 (270)
T ss_dssp --CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS--SSEEEEEEE-
T ss_pred --HHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC--CCCEEEEEeC
Confidence 89999999999999999999999999999984 8999999998
No 21
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-60 Score=480.08 Aligned_cols=264 Identities=33% Similarity=0.563 Sum_probs=251.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHH
Q 005820 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQ 477 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ 477 (676)
..+++++|++.|.++.+++++||++++|+.+|+++..|.++||+||||+||+||.|+|+|+|+|++|++||+++|+.|+.
T Consensus 6 ~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~tfa~F~s 85 (312)
T COG3958 6 TESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLS 85 (312)
T ss_pred chHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCceeechHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -HHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 005820 478 -RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (676)
Q Consensus 478 -ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir 555 (676)
|+||||++.+|++++||.++++++|+ +|+||+|||..||+++||.+||++|++|+|+.|++.++.++.+ .++|+|+|
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~~~~~~-~~GP~Y~R 164 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAILDQIAD-YKGPVYMR 164 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHHHHHHh-cCCCEEEE
Confidence 99999999999999999999999999 7999999999999999999999999999999999999999976 79999999
Q ss_pred ecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh
Q 005820 556 YPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA 635 (676)
Q Consensus 556 ~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~ 635 (676)
+.|...+.. +++ .++.|++||++++++|.|++||++|.|+..+++||+.|+++||++.|||+.++||+|++.+.+.+
T Consensus 165 l~R~~~p~~-~~~--~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i~~~A 241 (312)
T COG3958 165 LGRGKVPVV-VDE--GGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAILKAA 241 (312)
T ss_pred ecCCCCCce-ecC--CCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHHHHHH
Confidence 999764332 222 25899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC
Q 005820 636 KSHEVLITVEEGS-IGGFGSHVVQFLAQDGL 665 (676)
Q Consensus 636 ~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~ 665 (676)
++++.|||+|||+ .||+|+.|++.+++++-
T Consensus 242 ~~t~~IvT~EeHsi~GGlGsaVAEvlse~~p 272 (312)
T COG3958 242 RETGRIVTAEEHSIIGGLGSAVAEVLSENGP 272 (312)
T ss_pred hhcCcEEEEecceeecchhHHHHHHHHhcCC
Confidence 9999999999998 69999999999999984
No 22
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=100.00 E-value=2.6e-58 Score=525.72 Aligned_cols=525 Identities=22% Similarity=0.260 Sum_probs=399.2
Q ss_pred ccccccccchHHHhhccCCCccccccccccccCCCCCCCCcccCCCCcccccccCHHH-HHHHHHHHHHHHHHHhh-hc-
Q 005820 36 FSHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRPPTPLLDTINYPIHMKNLSIRE-LKQLADELRADVIFNVS-KT- 112 (676)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~-l~~la~~iR~~i~~~v~-~~- 112 (676)
-||+++++..|+++.... .. ....|||++||....+.+-=...+ ++++++.||++++.|+. .+
T Consensus 30 a~~l~~~l~~~a~~~g~~-------------~~-~~~~t~y~nti~~~~~~~~pgd~~~e~~i~~~iR~~ai~MV~~A~~ 95 (885)
T TIGR00759 30 ARYLLEQLLEYAREHGVP-------------IP-AGTTTDYINTIPVEEQPAYPGDLELERRIRSIIRWNAIAMVLRANK 95 (885)
T ss_pred HHHHHHHHHHHHHHcCCC-------------CC-CCCCCCCccCCChhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 367777877766553221 11 123488888887554443222222 45667999999999996 46
Q ss_pred -----CCCCCCCccHHHHHHHHHh-hccC-C----CCccccCcCchH---HHHHHHcCC--hHHhhhhHh---cCCCCCC
Q 005820 113 -----GGHLGSSLGVIELTVALHY-VFNA-P----KDRILWDVGHQT---YPHKILTGR--RDKMHTMRQ---TDGLSGF 173 (676)
Q Consensus 113 -----~GH~~sslg~~el~~aL~~-~~~~-p----~D~~i~s~gH~~---y~~~~l~G~--~~~l~~~r~---~~gl~g~ 173 (676)
+||+|+++|+++|+.+||+ +|+. | +| +|+|+||.+ |+.+++.|+ .++|++||| .++|++|
T Consensus 96 ~~~~vgGHigsslS~adIl~vLy~~~lr~~~~~~~rD-~VlSKGHasp~lYA~L~l~G~ls~e~L~~FRq~~~g~gL~sh 174 (885)
T TIGR00759 96 KDLGLGGHISTYASAATLYEVGFNHFFRGHSEGGGGD-LVFFQGHAAPGIYARAFLEGRLTEEQLDNFRQEVQGDGLSSY 174 (885)
T ss_pred CCCCCCCCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC-EEEECCcHHHHHHHHHHHcCCCCHHHHHHhcCCCCCCCCCCC
Confidence 8999999999999999985 4442 2 78 599999999 999999997 689999999 4579999
Q ss_pred CCCCC-CCCcccCCCccchhhHHHHHHHHHchh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEE
Q 005820 174 TKRSE-SEYDCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVIL 244 (676)
Q Consensus 174 ~~~~e-s~~~~~g~G~~G~~ls~A~G~AlA~~~-------~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv 244 (676)
|++.. +.+..|.+|++|+|+++|+|+|++.|+ ...+++||||+||||++||++|||+.+|++++ .|||+|+
T Consensus 175 Php~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IV 254 (885)
T TIGR00759 175 PHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVI 254 (885)
T ss_pred CCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence 99865 345789999999999999999999996 56789999999999999999999999999988 7999999
Q ss_pred ECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhc
Q 005820 245 NDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL 324 (676)
Q Consensus 245 ~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~ 324 (676)
|+|++ ++ ||++..++.+. +++..+ |+++
T Consensus 255 D~N~~-ql-----DG~v~~~~~i~------------------------------e~le~~----------------F~a~ 282 (885)
T TIGR00759 255 NCNLQ-RL-----DGPVRGNGKII------------------------------QELESL----------------FRGA 282 (885)
T ss_pred eCCCC-cc-----CCccccccccc------------------------------hhHHHH----------------HHhc
Confidence 99995 32 77766554421 334433 5566
Q ss_pred CceeeccC--------------------------------------------------------------------CCCC
Q 005820 325 GLYYIGPV--------------------------------------------------------------------DGHN 336 (676)
Q Consensus 325 G~~~~~~v--------------------------------------------------------------------dGhd 336 (676)
||+++.++ +|||
T Consensus 283 GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD 362 (885)
T TIGR00759 283 GWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHD 362 (885)
T ss_pred CCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCC
Confidence 66655322 6999
Q ss_pred HHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc------------ccC---------------ccc
Q 005820 337 VDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK------------FDP---------------ATG 389 (676)
Q Consensus 337 ~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~------------fd~---------------~~g 389 (676)
+++|.+|++++++. .++|++|.++|+||+|.+.+..+.+.+|+..+ |+. +.+
T Consensus 363 ~~~I~~A~~~A~~~-~grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l~~e~l~~~r~~~g~~~~d~~~~~~~~~~~~~~ 441 (885)
T TIGR00759 363 PRKVYAAYAAAQEH-KGQPTVILAKTIKGYGMGDAAESRNTAHQVKKLEVDALKNFRDRFELPLSDAQVEELPYYHPGEG 441 (885)
T ss_pred HHHHHHHHHHHHhC-CCCCEEEEEeeeecCCCChhhCCCcccccCCCCCHHHHHHHHHHcCCCCChhHhccCCCcCCCCC
Confidence 99999999988764 46899999999999999844444578897532 110 000
Q ss_pred -------------------------ccc--c-----------cchhhhhHHHHHHHHHHHHHHcC---CCEEEEeccccC
Q 005820 390 -------------------------KQF--K-----------SSARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMGG 428 (676)
Q Consensus 390 -------------------------~~~--~-----------~~~~~~~~~~a~~~aL~~~~~~d---~~iv~i~aD~~g 428 (676)
.++ + +..+..+.+.+|.+.|..+++.. ++||.+.+|...
T Consensus 442 s~e~~y~~~rr~~Lgg~~p~R~~~~~~l~vP~l~~~~~~~~~~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDear 521 (885)
T TIGR00759 442 SPEVRYLLARRQALGGYLPARRTFAEHLTVPALEFFGALLKGSGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEAR 521 (885)
T ss_pred CHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCchhhHHHhcCCCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccc
Confidence 000 0 00134678899999999998863 579999999999
Q ss_pred ccchhhhhhh-------------------------CCCceeeccccHHHHHHH--HHHHHhc--C--CeeEEeechhH-H
Q 005820 429 GTGLNLFLRR-------------------------FPTRCFDVGIAEQHAVTF--AAGLACE--G--LKPFCAIYSSF-M 476 (676)
Q Consensus 429 s~~l~~f~~~-------------------------~p~R~id~GIaE~~~v~~--A~GlA~~--G--~~p~~~t~~~F-l 476 (676)
++||+++-.+ -.+|+++.||+|.++++. |+|.|+. | +.||...|++| .
T Consensus 522 tfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgf 601 (885)
T TIGR00759 522 TFGMEGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGF 601 (885)
T ss_pred cCChHHhhcccCccCCCCccCCccchhhhhhcccCCCCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccc
Confidence 9998765332 247999999999999984 6666664 6 78999999999 9
Q ss_pred HHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCC
Q 005820 477 QRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRP 551 (676)
Q Consensus 477 ~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P 551 (676)
||..|.+ ..++.+...-++++..+|. ....|-+||......+...+||++-|.|+.+.|+..++..++++ ....
T Consensus 602 qR~gD~~-waa~d~~argfl~g~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~ 680 (885)
T TIGR00759 602 QRIGDLC-WAAADQRARGFLLGATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQED 680 (885)
T ss_pred cchHHHH-HHHhhhcCCceEeccCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCC
Confidence 9999975 5789999999999988887 34568899987776677889999999999999999999999874 3446
Q ss_pred eEEEecCCCCccccCCCCCCCCccccCc-eeEeecC------CcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEcccc
Q 005820 552 SCFRYPRGNGIGVELPPGNKGIPLEVGK-GRILIEG------ERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFC 623 (676)
Q Consensus 552 ~~ir~~r~~~~~~~~p~~~~~~~~~~gk-~~vl~eG------~dv~Iva~Gs~v~~aleAa~~L~~~-Gi~v~VId~~~l 623 (676)
++++++--+-. ...|...++..-.+-| .|.++++ .+|.|+++|+.+.++++|+++|+++ |+.++|+++.|.
T Consensus 681 v~yylt~~ne~-~~qp~~p~~~~egIlkG~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~ 759 (885)
T TIGR00759 681 VFYYVTVMNEN-YVQPPMPEGAEEGILKGLYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSF 759 (885)
T ss_pred EEEEEEecCCC-CCCCCCCcchHHhHHhCceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCH
Confidence 77777763311 1122211222222223 3666652 4799999999999999999999986 999999999999
Q ss_pred CcCcHHH
Q 005820 624 KPLDHAL 630 (676)
Q Consensus 624 ~P~d~e~ 630 (676)
.-|..+.
T Consensus 760 ~eL~Rd~ 766 (885)
T TIGR00759 760 TELARDG 766 (885)
T ss_pred HHHHHhH
Confidence 8876663
No 23
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=2.5e-53 Score=452.84 Aligned_cols=268 Identities=22% Similarity=0.313 Sum_probs=237.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeccccCccc----hhhhhhhCCC-ceeeccccHHHHHHHHHHHHhcCCeeEEee-c
Q 005820 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 472 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~p~-R~id~GIaE~~~v~~A~GlA~~G~~p~~~t-~ 472 (676)
.+++++|+++|.+++++||+++++++|++.+++ +++|+++||+ ||||+||+||+|+++|+|||++|++||+++ |
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 578999999999999999999999999975444 6899999999 999999999999999999999999999986 6
Q ss_pred hhHHHHHHHHHHHhhhcC--------CCCEEEEeecCCCc-CCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 473 SSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLV-GADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 473 ~~Fl~ra~dqi~~~~a~~--------~lpV~iv~~~~G~~-G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
+.|++|+||||++++|++ ++||+++ ++|.. +.+|+|||+..+ ++|+++|||+|++|+|+.|++.++++
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~--~~g~~~~~~G~tHs~~~e-a~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIR--GPGGVGRQLGAEHSQRLE-SYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEE--ecCCCCCCCCccccccHH-HHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 788899999999999987 5566665 55554 479999976665 99999999999999999999999999
Q ss_pred HHHhCCCCeEEEecCCCCc-cccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 544 AAAIDDRPSCFRYPRGNGI-GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 544 al~~~~~P~~ir~~r~~~~-~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
+++ .++|+|||+++.... ...++. +.+.+++||+.++++|.|++||++|.++++|++|++.|+++||+++|||++|
T Consensus 161 a~~-~~~Pv~ire~~~l~~~~~~v~~--~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 161 AIR-SNNPVIFFEHVLLYNLKEEIPD--NEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHh-CCCcEEEEEcHHhcCCCCCCCC--CCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 986 689999996655432 112332 3467889999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCcccc
Q 005820 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVKV 672 (676)
Q Consensus 623 l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~~ 672 (676)
+||||+++|.++++++++|||+|||+ .||||++|++.+.++++ ++.|++.
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~r 290 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVR 290 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEE
Confidence 99999999999999999999999998 69999999999999986 6766654
No 24
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=1.8e-52 Score=450.44 Aligned_cols=273 Identities=24% Similarity=0.389 Sum_probs=239.0
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccc----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 005820 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (676)
Q Consensus 397 ~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t 471 (676)
+..+|+++|+++|.+++++|++++++++|++.+.+ +++|.++| |+||||+||+||+|+|+|+|+|++|++||+++
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~ 104 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEF 104 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999999999999999999999999976555 45777777 99999999999999999999999999999998
Q ss_pred -chhHHHHHHHHHHHhhhcCC--------CCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHH
Q 005820 472 -YSSFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (676)
Q Consensus 472 -~~~Fl~ra~dqi~~~~a~~~--------lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~ 542 (676)
++.|++|+||||++++|+++ +||++++.+++..| +|+|||+.+ +++||++|||+|++|+|+.|++.+++
T Consensus 105 ~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g-~G~tH~~~~-~a~lr~iPnl~V~~Pad~~e~~~~l~ 182 (356)
T PLN02683 105 MTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAG-VGAQHSQCF-AAWYSSVPGLKVLAPYSSEDARGLLK 182 (356)
T ss_pred ehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCC-CCCccccCH-HHHHhcCCCCEEEEeCCHHHHHHHHH
Confidence 57789999999999999887 99999998744355 599999887 59999999999999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCCccc-cCCC--CCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q 005820 543 TAAAIDDRPSCFRYPRGNGIGV-ELPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVAD 619 (676)
Q Consensus 543 ~al~~~~~P~~ir~~r~~~~~~-~~p~--~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId 619 (676)
++++ .++|++||+++...... +... ...++.+++|+++++++|+|++||++|+++..|++|++.|+++||+++|||
T Consensus 183 ~a~~-~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId 261 (356)
T PLN02683 183 AAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVIN 261 (356)
T ss_pred HHHh-CCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9986 67999999754321110 0111 011356789999999999999999999999999999999999999999999
Q ss_pred ccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCcccc
Q 005820 620 ARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVKV 672 (676)
Q Consensus 620 ~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~~ 672 (676)
++|+||||+++|.++++++++|||+|||+ .||||++|++++.+++| ++.|++.
T Consensus 262 ~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~r 317 (356)
T PLN02683 262 LRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVER 317 (356)
T ss_pred CCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEE
Confidence 99999999999999999999999999998 69999999999999985 5665543
No 25
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=5.1e-52 Score=443.43 Aligned_cols=269 Identities=28% Similarity=0.428 Sum_probs=239.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEeccccCccc----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEeec
Q 005820 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 472 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~ 472 (676)
+.+|+++|+++|.+++++|++++++++|++.+++ +++|+++| |+||||+||+||+|+++|+|+|++|++||+++|
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 3579999999999999999999999999987666 38899999 999999999999999999999999999999997
Q ss_pred h-hHHHHHHHHHHHhhhcC--------CCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 473 S-SFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 473 ~-~Fl~ra~dqi~~~~a~~--------~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
+ .|++|+||||++++|++ ++||+++..+ |..+.+|+|||+..+ ++|+++|||+|++|+|+.|++.++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~-g~~~~~G~tH~~~~e-a~~r~iP~l~V~~P~d~~e~~~~l~~ 160 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPN-GAAARVAAQHSQCYA-AWYSHIPGLKVVAPYFAADCKGLLKT 160 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCC-CCCCCCCcccccCHH-HHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 7 78899999999999988 4666666544 447889999977777 99999999999999999999999999
Q ss_pred HHHhCCCCeEEEecCCCCccc-cCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 544 AAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 544 al~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
+++ .++|+||++++..+... .++. +.+.+++||++++++|+|++||+||+++..|++|++.|+++|++++|||+++
T Consensus 161 a~~-~~~Pv~i~~~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 161 AIR-DPNPVIFLENEILYGHSHEVPE--EEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HHh-CCCcEEEEEchhhcCCCCCCCC--CCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 996 58999998876543211 1222 2467889999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccc
Q 005820 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 623 l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
++|||++.+.++++++++||||||+. .||||++|++++.++++ ++.+++
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~ 289 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVE 289 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeE
Confidence 99999999999999999999999998 79999999999999875 455544
No 26
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.3e-51 Score=453.55 Aligned_cols=272 Identities=24% Similarity=0.342 Sum_probs=242.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccc----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 005820 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (676)
Q Consensus 397 ~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~----l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t 471 (676)
...+++++|+++|.+++++|++++++++|++.+.+ .++|.++| |+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 45689999999999999999999999999976665 47899999 99999999999999999999999999999998
Q ss_pred c-hhHHHHHHHHHHHhhh--------cCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHH
Q 005820 472 Y-SSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (676)
Q Consensus 472 ~-~~Fl~ra~dqi~~~~a--------~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~ 542 (676)
+ +.|++|+||||+|++| ++++||+|++.++|..+ .|+ ||+.+|+++|+++|||+|++|+|+.|++.+++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~-~G~-hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~ 297 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR-VAA-QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLK 297 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC-CCC-ccccCHHHHHhhCCCCEEEEeCCHHHHHHHHH
Confidence 4 7788999999999999 89999999987766544 677 88899999999999999999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCCcc-ccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 543 TAAAIDDRPSCFRYPRGNGIG-VELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 543 ~al~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
++++ +++|+||++++..+.. ..+|. .+++.+++||++++|+|+|++||++|.++..|++|++.|+++||+++|||++
T Consensus 298 ~ai~-~~~Pv~ile~~~ry~~~~~vp~-~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 298 AAIR-DPNPVIFLENEILYGQSFDVPK-LDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred HHhh-CCCcEEEEechhhcCCCCCCCC-cCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9986 6899999544322111 11332 1346788999999999999999999999999999999999999999999999
Q ss_pred ccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCcccc
Q 005820 622 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVKV 672 (676)
Q Consensus 622 ~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~~ 672 (676)
||+|||+++|.++++++++|||+|||+ .||||++|++++.+++| ||.|++.
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~r 429 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLR 429 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEE
Confidence 999999999999999999999999998 69999999999999986 7777654
No 27
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-51 Score=440.25 Aligned_cols=272 Identities=27% Similarity=0.441 Sum_probs=239.1
Q ss_pred hhhhhHHHHHHHHHHHHHHcCCCEEEEecccc---Ccc-chhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe
Q 005820 396 ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGT-GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 470 (676)
Q Consensus 396 ~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~---gs~-~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~ 470 (676)
....+|+++|+++|.+++++||+++++++|++ +.+ .+++|+++| |+||||+||+||+|+++|+|||++|++||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 34678999999999999999999999999987 223 368999999 9999999999999999999999999999999
Q ss_pred e-chhHHHHHHHHHHHhhhcC--------CCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHH
Q 005820 471 I-YSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV 541 (676)
Q Consensus 471 t-~~~Fl~ra~dqi~~~~a~~--------~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~ 541 (676)
+ |++|++|++|||+++++++ ++|++++. .+|.+|.+|+||++..+ ++|+++|||+|++|+|+.|++.++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~-~~g~~g~~G~tHs~~~e-a~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRG-PNGAVGHGGAYHSQSFE-AYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEe-CCCCCCCCCCcccchHH-HHHhcCCCCEEEeeCCHHHHHHHH
Confidence 8 8999999999999999986 46666653 34447899999977666 999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEecCCCCccccCCC-CCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEc
Q 005820 542 ATAAAIDDRPSCFRYPRGNGIGVELPP-GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (676)
Q Consensus 542 ~~al~~~~~P~~ir~~r~~~~~~~~p~-~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~ 620 (676)
+++++ .++|+||++|+..... ..+. ....+.+++||++++++|+|++||++|+++..|++|++.|+++|++++|||+
T Consensus 190 ~~a~~-~~~P~~i~~p~~l~r~-~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~ 267 (355)
T PTZ00182 190 KAAIR-DPNPVVFFEPKLLYRE-SVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDL 267 (355)
T ss_pred HHHHh-CCCcEEEEeehHHhCC-CCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99997 5899999988753211 1111 1124677899999999999999999999999999999999999999999999
Q ss_pred cccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccc
Q 005820 621 RFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 621 ~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
++++|||++.|.+.+++++.||||||+. .||||++|++++.++++ |+.|++
T Consensus 268 ~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ 321 (355)
T PTZ00182 268 RSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIK 321 (355)
T ss_pred eeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeE
Confidence 9999999999999999999999999998 69999999999999985 566654
No 28
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.1e-50 Score=407.20 Aligned_cols=270 Identities=28% Similarity=0.455 Sum_probs=243.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEEecccc---Cccch-hhhhhhCC-CceeeccccHHHHHHHHHHHHhcCCeeEEee-c
Q 005820 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 472 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~iv~i~aD~~---gs~~l-~~f~~~~p-~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t-~ 472 (676)
.++++|++++|.++|++|++|+++++|++ |.++. .+++++|+ +|++|++|+|.+++|+|.|+|+.|+||++++ |
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiqf 81 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQF 81 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEEe
Confidence 47899999999999999999999999986 33443 68999996 5999999999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHhhhc--------CCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHH
Q 005820 473 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (676)
Q Consensus 473 ~~Fl~ra~dqi~~~~a~--------~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~a 544 (676)
.+|+..++|||+|++++ ..+|+++++..+|..+ .|.+|++... +++.++||++|+.|++|.|++++++.|
T Consensus 82 ~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~-~~~~HSqs~e-a~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 82 ADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIG-GGAQHSQSLE-ALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred cchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCC-chhhccCCHH-HHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999885 4789999986655333 4788998887 799999999999999999999999999
Q ss_pred HHhCCCCeEEEecCCCCc--cccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 545 AAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 545 l~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
++ +++||+|.+++..+- ..++|+ .+|.+++||+.+.|+|+|+|||+||.|++.+++||++|.++||+++|||+||
T Consensus 160 Ir-d~dPViflE~k~lY~~~~~eVP~--~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IR-DPDPVIFLEHKRLYRSFKGEVPE--EDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hc-CCCCEEEEecHHHhcccccCCCC--CCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 87 899999999986432 245674 5689999999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccccc
Q 005820 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVKVR 673 (676)
Q Consensus 623 l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~~~ 673 (676)
|+|+|.++|.++++|+.++|+|||.. ++|+|++|++.+.|+.| ||+|+++-
T Consensus 237 l~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv 290 (324)
T COG0022 237 LSPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRV 290 (324)
T ss_pred cCccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhh
Confidence 99999999999999999999999986 79999999999999987 99999864
No 29
>PRK05261 putative phosphoketolase; Provisional
Probab=100.00 E-value=2.5e-46 Score=428.54 Aligned_cols=464 Identities=19% Similarity=0.217 Sum_probs=344.2
Q ss_pred CCCCCCCccHHHHHHHHHhhccCC-CC-ccccCcCchH---HHHHHHcC-----Ch----HH--hh-hhHhcC---CCCC
Q 005820 113 GGHLGSSLGVIELTVALHYVFNAP-KD-RILWDVGHQT---YPHKILTG-----RR----DK--MH-TMRQTD---GLSG 172 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~p-~D-~~i~s~gH~~---y~~~~l~G-----~~----~~--l~-~~r~~~---gl~g 172 (676)
-||+|++.|...+.++|.++.... .| .+|++.||.+ |+..+|.| .. ++ |+ .|||++ |++|
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~pgg~~s 128 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFPGGIPS 128 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCCCCcCC
Confidence 699999999999999998776432 34 4699999998 89999999 21 22 66 588874 5889
Q ss_pred CCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccc---hHHHHHHhhhcC-CCEEEEEECCC
Q 005820 173 FTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQ---AYEAMNNAGYLD-SDMIVILNDNK 248 (676)
Q Consensus 173 ~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~---~~EAln~A~~~~-~~li~Iv~dN~ 248 (676)
||.+ +.++....+|.+|++++.|+|+|+. +++.+|+|++|||+.++|. .|++.+++...+ .+|+.|+++|+
T Consensus 129 H~~~-~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng 203 (785)
T PRK05261 129 HAAP-ETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNG 203 (785)
T ss_pred CCCC-CCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecC
Confidence 9985 6788888999999999999999965 4588999999999999998 499988888665 89999999998
Q ss_pred CCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCcee
Q 005820 249 QVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYY 328 (676)
Q Consensus 249 ~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~ 328 (676)
+ ++.+.+..... ..+++.++ |++|||..
T Consensus 204 ~-~Is~pt~~~~~-----------------------------------~~e~l~~r----------------f~g~Gw~~ 231 (785)
T PRK05261 204 Y-KIANPTILARI-----------------------------------SDEELEAL----------------FRGYGYEP 231 (785)
T ss_pred C-cCCCCcccccc-----------------------------------CcHhHHHH----------------HHHCCCee
Confidence 4 43222211100 11456655 99999998
Q ss_pred eccCCCCCHHHHHHH--------HH-------Hhhhc-CCCCcE--EEEEEeccCCCcch------hhhhhcccCCccc-
Q 005820 329 IGPVDGHNVDDLVAI--------LE-------EVKNT-KTTGPV--LIHVVTEKGRGYPY------AEKAADKYHGVAK- 383 (676)
Q Consensus 329 ~~~vdGhd~~~l~~a--------l~-------~a~~~-~~~~P~--lI~v~T~kg~G~~~------ae~~~~~~H~~~~- 383 (676)
+ .|||||++++.++ ++ +||.. ...+|+ +|+++|.||+|-+. .| +..+.|+++.
T Consensus 232 i-~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~e-Gs~raHqvPL~ 309 (785)
T PRK05261 232 Y-FVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPIE-GSWRAHQVPLA 309 (785)
T ss_pred E-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCcccC-CCchhhcCCCC
Confidence 8 6899999887777 44 33321 115899 99999999999552 33 3357788863
Q ss_pred ------------------------ccCc------------ccc-------------ccc----c-------------chh
Q 005820 384 ------------------------FDPA------------TGK-------------QFK----S-------------SAR 397 (676)
Q Consensus 384 ------------------------fd~~------------~g~-------------~~~----~-------------~~~ 397 (676)
|+.. +|. ..+ + ...
T Consensus 310 ~~~~~~~~~~~L~~wl~sy~p~elF~~~g~l~~~~~~l~p~g~~r~~~~P~ang~~~~~~l~lp~~~~~~~~~~~~g~~~ 389 (785)
T PRK05261 310 NVRDNPEHLDLLEDWLRSYRPEELFDEDGRLKPELAALAPKGDRRMGANPHANGGLLLRDLRLPDFRDYAVPVGKPGAVM 389 (785)
T ss_pred CcccCHHHHHHHHHHhhcCChhhhcCCCCchhHHHHHhccCchhhhcCCchhcCCcCccccCCCchHhhcccccCCCccc
Confidence 2210 000 000 0 001
Q ss_pred hhhHHHHHHHHHHHHHHcCCC-EEEEeccccCccchhh-hh----------------hhCCCceeeccccHHHHHHHHHH
Q 005820 398 TQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNL-FL----------------RRFPTRCFDVGIAEQHAVTFAAG 459 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~-iv~i~aD~~gs~~l~~-f~----------------~~~p~R~id~GIaE~~~v~~A~G 459 (676)
...++. +++.|.++++.+|+ ++++++|...|+.+.. |. ....+|+++ +++|++|.|++.|
T Consensus 390 ~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~~Grvie-~LsEh~~~g~~~G 467 (785)
T PRK05261 390 AEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAPDGRVME-VLSEHLCEGWLEG 467 (785)
T ss_pred cccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCCCCCeee-eecHHHHHHHHHH
Confidence 123444 89999999999998 8999999999988743 32 122389999 9999999999999
Q ss_pred HHhcCCeeEEeechhHH---HHHHHHHHHhhh----------cCCCCEEEEeecCCC-cCCCCCCCCC---hhhHhHhhc
Q 005820 460 LACEGLKPFCAIYSSFM---QRAYDQVVHDVD----------LQKLPVRFAMDRAGL-VGADGPTHCG---SFDVTFMAC 522 (676)
Q Consensus 460 lA~~G~~p~~~t~~~Fl---~ra~dqi~~~~a----------~~~lpV~iv~~~~G~-~G~dG~tH~~---~~d~a~~~~ 522 (676)
+++.|.++++++|..|+ ..++.|+.-..- +..++ ++.++.+. .|+||+|||. ++.++-++.
T Consensus 468 y~LtG~~~~~~sYeaF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn--~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~ 545 (785)
T PRK05261 468 YLLTGRHGFFSSYEAFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN--YLLTSHVWRQDHNGFSHQDPGFIDHVANKKP 545 (785)
T ss_pred HHhcCCCcceecHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccee--EEeecceeecCCCCCCCCCchHHHHHHhcCC
Confidence 99999999999999998 788888732222 22333 55566555 8999999999 999988888
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCc-eeEee--c-----CCcEEEEEe
Q 005820 523 LPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGK-GRILI--E-----GERVALLGY 594 (676)
Q Consensus 523 iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk-~~vl~--e-----G~dv~Iva~ 594 (676)
|+++|+.|+|++|+..+++.|++..++|++|.++|++.+...-.+ .....+.+ ++++. + +.|++|+|+
T Consensus 546 -~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp~~~~~~---~a~~~~~kGayi~~~a~~~~~~~pDvvL~at 621 (785)
T PRK05261 546 -DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRPQWLSMD---EARKHCTKGLGIWDWASNDDGEEPDVVLACA 621 (785)
T ss_pred -CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCcccCChH---HHHHhccCceEEEEeccCCCCCCCCEEEEEe
Confidence 999999999999999999999998899999999999865331110 00011223 35665 2 369999999
Q ss_pred chhHHH-HHHHHHHHHhC--CCcEEEEEcccc---Cc-------CcHHHHHHHhccCCEEEE
Q 005820 595 GTAVQS-CLAASALLESN--GLRLTVADARFC---KP-------LDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 595 Gs~v~~-aleAa~~L~~~--Gi~v~VId~~~l---~P-------~d~e~i~~~~~~~~~vIv 643 (676)
|+++.. |++|+++|+++ |++++||++.-+ .| ++.+.+.++....+.||.
T Consensus 622 Gsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif 683 (785)
T PRK05261 622 GDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIF 683 (785)
T ss_pred CcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEE
Confidence 999988 99999999999 999999998522 11 344555555544444443
No 30
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=365.81 Aligned_cols=222 Identities=33% Similarity=0.573 Sum_probs=198.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHhh-cc----CC----CCccccCcCchH---HHHHHHc
Q 005820 89 LSIRELKQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV-FN----AP----KDRILWDVGHQT---YPHKILT 155 (676)
Q Consensus 89 ~~~~~l~~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~~-~~----~p----~D~~i~s~gH~~---y~~~~l~ 155 (676)
++..+|+++|.+||+.+++|+. ...||+|+|||++|++++||+. ++ +| |||||+||||.+ |+.++..
T Consensus 5 ~~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae~ 84 (243)
T COG3959 5 LSVDELERIAREIRRNIVRMLANAGSGHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAEK 84 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHHc
Confidence 5788999999999999999996 5778999999999999999864 22 23 899999999998 8888999
Q ss_pred CC--hHHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHH
Q 005820 156 GR--RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNN 232 (676)
Q Consensus 156 G~--~~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~ 232 (676)
|. +++|.+|++.++ |+|||.+..+++....+|++|++||+|+|||++.|+++.+++||+++||||++||++|||+.+
T Consensus 85 G~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~ 164 (243)
T COG3959 85 GYFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMT 164 (243)
T ss_pred CCCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHH
Confidence 96 788999999998 999999988999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhh
Q 005820 233 AGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG 311 (676)
Q Consensus 233 A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~ 311 (676)
|++++ .|||.|+|.|+.+ +||.+..+.. .+++..|
T Consensus 165 Aah~~L~NLiaivD~N~~Q------ldG~t~~i~~-------------------------------~~pL~~k------- 200 (243)
T COG3959 165 AAHYKLDNLIAIVDRNKLQ------LDGETEEIMP-------------------------------KEPLADK------- 200 (243)
T ss_pred HHHhccCcEEEEEecCCcc------cCCchhhccC-------------------------------cchhHHH-------
Confidence 99887 8999999999842 2565554432 2677777
Q ss_pred ccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccC
Q 005820 312 MISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 312 ~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg 365 (676)
||+|||+++ .|||||+++|.+++++++.. .++|++|+++|+||
T Consensus 201 ---------~eAFGw~V~-evdG~d~~~i~~a~~~~~~~-~~rP~~IIa~Tvkg 243 (243)
T COG3959 201 ---------WEAFGWEVI-EVDGHDIEEIVEALEKAKGS-KGRPTVIIAKTVKG 243 (243)
T ss_pred ---------HHhcCceEE-EEcCcCHHHHHHHHHhhhcc-CCCCeEEEEecccC
Confidence 999999988 89999999999999999875 34999999999987
No 31
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=7.7e-44 Score=416.76 Aligned_cols=510 Identities=18% Similarity=0.197 Sum_probs=356.1
Q ss_pred ccCHHHHHHHHH-HHHHHHHH--Hhhh-cCCCCCCCccHHHHHHHHHhhcc-----CCCCccccCcCchHHHHHHHc--C
Q 005820 88 NLSIRELKQLAD-ELRADVIF--NVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKILT--G 156 (676)
Q Consensus 88 ~~~~~~l~~la~-~iR~~i~~--~v~~-~~GH~~sslg~~el~~aL~~~~~-----~p~D~~i~s~gH~~y~~~~l~--G 156 (676)
+++.+++.++-+ -+|.+.++ +..+ .++-..+.-|+.-+.++|-..++ .+.| +|++..|+...|.+.. |
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~~D-~vigmaHRgrlnvLa~v~G 263 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGVKE-IVIGMAHRGRLNVLVNVLG 263 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCCCC-EEEecCcCchHHHHHHhcC
Confidence 555555554432 22333333 2223 45555578888888887765432 3566 5554569998887663 7
Q ss_pred C--hHHhhhhHhcCCC-------C-------CCCCCC----CCCCc--ccCCCccchhhHHHHHHHHHchhcCCC-----
Q 005820 157 R--RDKMHTMRQTDGL-------S-------GFTKRS----ESEYD--CFGTGHSSTSISAGLGMAVGRDLKGRK----- 209 (676)
Q Consensus 157 ~--~~~l~~~r~~~gl-------~-------g~~~~~----es~~~--~~g~G~~G~~ls~A~G~AlA~~~~~~~----- 209 (676)
. ++.|.+|. |.. + |++... .+-|. .+--+|+|...|+|+|+|+|.++++.+
T Consensus 264 ~~~~~ifaEf~--Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 264 KPPRDLFAEFE--GKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred CCHHHHHHHHc--CCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 4 45566653 221 1 222100 11111 112488999999999999999998877
Q ss_pred -CeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHH
Q 005820 210 -NNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELR 284 (676)
Q Consensus 210 -~~vv~viGDGa~-~eG~~~EAln~A~~~~~~---li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r 284 (676)
..+||++|||++ ++|.+||+||+|+.|+.| +|+||+||+ +++.|...+..+.
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq-~g~tT~~~~~~s~---------------------- 398 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQ-IGFTTSPPDDRST---------------------- 398 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEeeCHHHhccc----------------------
Confidence 789999999998 799999999999999987 999999998 4555533221110
Q ss_pred HHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEe
Q 005820 285 EVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVT 362 (676)
Q Consensus 285 ~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T 362 (676)
....+ +++++|+..+ .|||+|++++.++.+.|.+. +.++|++|++.|
T Consensus 399 --------------~~~sd----------------~Ak~~giP~~-~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~t 447 (924)
T PRK09404 399 --------------PYCTD----------------VAKMVQAPIF-HVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVC 447 (924)
T ss_pred --------------hhHHH----------------HHeecCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEE
Confidence 11222 2778999877 89999999999888765532 368999999999
Q ss_pred ccCCCcchhhhh----h---ccc--CCcc--c------------------------------cc------C---------
Q 005820 363 EKGRGYPYAEKA----A---DKY--HGVA--K------------------------------FD------P--------- 386 (676)
Q Consensus 363 ~kg~G~~~ae~~----~---~~~--H~~~--~------------------------------fd------~--------- 386 (676)
++-.|+...... + ..| |--+ . ++ +
T Consensus 448 YR~~GHne~D~p~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~~~~~~~~~~~ 527 (924)
T PRK09404 448 YRRHGHNEGDEPSFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWRPADWLAGDWS 527 (924)
T ss_pred ecCCCCCCCCCCcCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccc
Confidence 999998643211 0 011 1000 0 00 0
Q ss_pred -----------ccccc-------------ccc--------------------chhhhhHHHHHHHHHHHHHHcCCCEEEE
Q 005820 387 -----------ATGKQ-------------FKS--------------------SARTQSYTTYFAEALIAEAEVDKDVVAI 422 (676)
Q Consensus 387 -----------~~g~~-------------~~~--------------------~~~~~~~~~a~~~aL~~~~~~d~~iv~i 422 (676)
.||-+ .++ .....+|..|...++..+|++|++|+++
T Consensus 528 ~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~ 607 (924)
T PRK09404 528 PYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLS 607 (924)
T ss_pred cccccccccccCCCCCHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 01100 000 0122468899999999999999999999
Q ss_pred eccccCcc--------------c----hhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCee--EEee-chhHHH---
Q 005820 423 HAAMGGGT--------------G----LNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKP--FCAI-YSSFMQ--- 477 (676)
Q Consensus 423 ~aD~~gs~--------------~----l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p--~~~t-~~~Fl~--- 477 (676)
++|++.+| + ++++.++| +.|++|++|+|.+++|++.|+|+.|.+| ++++ |.+|+.
T Consensus 608 GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ 687 (924)
T PRK09404 608 GQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQ 687 (924)
T ss_pred eeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchH
Confidence 99997533 1 35677787 8999999999999999999999999975 9998 999974
Q ss_pred HHHHHHHHhh-hcC--CCCEEEEeecCCCcCCCCCCCCC-hhhHhHhhcC--CCCEEEecCCHHHHHHHHHHHHHhC-CC
Q 005820 478 RAYDQVVHDV-DLQ--KLPVRFAMDRAGLVGADGPTHCG-SFDVTFMACL--PNMVVMAPSDEAELFHMVATAAAID-DR 550 (676)
Q Consensus 478 ra~dqi~~~~-a~~--~lpV~iv~~~~G~~G~dG~tH~~-~~d~a~~~~i--P~l~V~~Psd~~E~~~~~~~al~~~-~~ 550 (676)
.++||+++.+ +++ ..++++.+.+++ .|. ||-|++ ..+ +++..+ |||+|+.|++|.+++++++.++.++ ++
T Consensus 688 ~~~Dq~i~~~~~k~~~~sglv~~~p~G~-~g~-g~~hsS~~~E-~~l~~~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~ 764 (924)
T PRK09404 688 VVIDQFISSGEQKWGRLSGLVMLLPHGY-EGQ-GPEHSSARLE-RFLQLCAEDNMQVCNPTTPAQYFHLLRRQALRPFRK 764 (924)
T ss_pred HHHHHHHHHHHHHhcCccCeEEEecCcC-CCC-ChhhhccCHH-HHHHhCCCCCCEEEecCCHHHHHHHHHHHHhhCCCC
Confidence 7799998875 443 456777777653 344 555554 444 677655 6999999999999999999875335 59
Q ss_pred CeEEEecCCCCcc-------ccCCCCCCCCccccCceeEeecCCcE--EEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 551 PSCFRYPRGNGIG-------VELPPGNKGIPLEVGKGRILIEGERV--ALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 551 P~~ir~~r~~~~~-------~~~p~~~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
|++|..|+..+.. .++++ ..+...++++. +++++|| +|||+|.+++.+++|++.+. ..++.|||++
T Consensus 765 Pvv~~~pK~L~r~~~~~s~~~e~~~--~~f~~vi~~~~-~~~~~~v~r~iv~~Gk~~~~~~~a~~~~~--~~~v~ii~le 839 (924)
T PRK09404 765 PLVVMTPKSLLRHPLAVSSLEELAE--GSFQPVIGDID-ELDPKKVKRVVLCSGKVYYDLLEARRKRG--IDDVAIVRIE 839 (924)
T ss_pred CEEEeccHHHhCCCCCCCCHHHcCC--CCceeeccccc-ccCccceeEEEEEcCHHHHHHHHHHHhCC--CCCEEEEEee
Confidence 9999999865321 11221 11333455544 5677899 79999999999999998553 3499999999
Q ss_pred ccCcCcHHHHHHHhccC----CEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 622 FCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 622 ~l~P~d~e~i~~~~~~~----~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
+|.|||.+.|.++++++ +.|++-||....|.+.+|...|.+
T Consensus 840 ~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~ 884 (924)
T PRK09404 840 QLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEE 884 (924)
T ss_pred eeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHH
Confidence 99999999999988885 455555666689999999888764
No 32
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=100.00 E-value=1.3e-42 Score=379.46 Aligned_cols=536 Identities=23% Similarity=0.261 Sum_probs=391.3
Q ss_pred CCCCcccCCCCcccccccCHHHHHHH-HHHHHHHHHHHhh---h----cCCCCCCCccHHHHHHHHHhhccCC------C
Q 005820 72 PPTPLLDTINYPIHMKNLSIRELKQL-ADELRADVIFNVS---K----TGGHLGSSLGVIELTVALHYVFNAP------K 137 (676)
Q Consensus 72 ~~~~~l~~i~~~~~~~~~~~~~l~~l-a~~iR~~i~~~v~---~----~~GH~~sslg~~el~~aL~~~~~~p------~ 137 (676)
+.|||.+||.......---..+|++. -..+||+++.||- + .|||++|+.|++.|..++|..|-.| .
T Consensus 55 ~~t~yintip~~~e~~~pgd~~lErrir~~irWna~a~vlRaskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~gg 134 (887)
T COG2609 55 TTTDYINTIPTEDEPEYPGDLELERRIRSLIRWNAHAMVLRASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGG 134 (887)
T ss_pred CCCCCcccccccccccCCCcHHHHHHHHHHHHHHHHHHHHHccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCC
Confidence 66788888877666554334456654 4789999998883 2 4899999999999999998655443 4
Q ss_pred CccccCcCchH---HHHHHHcCC--hHHhhhhHhcC---CCCCCCCCCC-CCCcccCCCccchhhHHHHHHHHHchhc--
Q 005820 138 DRILWDVGHQT---YPHKILTGR--RDKMHTMRQTD---GLSGFTKRSE-SEYDCFGTGHSSTSISAGLGMAVGRDLK-- 206 (676)
Q Consensus 138 D~~i~s~gH~~---y~~~~l~G~--~~~l~~~r~~~---gl~g~~~~~e-s~~~~~g~G~~G~~ls~A~G~AlA~~~~-- 206 (676)
|++.+ +||.+ |+...|.|| .++|..|||.. |+++||++.. ++...|.++++|-|.-.|+-.|.-.|++
T Consensus 135 DlV~~-qgHaSPg~yArafLeGRlseeqLdnFRqev~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~ 213 (887)
T COG2609 135 DLVFF-QGHASPGIYARAFLEGRLTEEQLDNFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEA 213 (887)
T ss_pred ceEEE-ecCCCchHHHHHHHhccccHHHHHHHHHhccCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHh
Confidence 87777 99998 999999998 68999999974 4999999864 6788899999999999999999988875
Q ss_pred -----CCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhh
Q 005820 207 -----GRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPL 280 (676)
Q Consensus 207 -----~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~ 280 (676)
.++.+||||+|||+|.|+...+|+..|++.+ .|++||||+|.| + .||++...|.+-+.|..
T Consensus 214 RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQ-r-----LDgpVrgngkiiqelE~------- 280 (887)
T COG2609 214 RGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQ-R-----LDGPVRGNGKIIQELEG------- 280 (887)
T ss_pred cCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchh-h-----cCCcccCCchhHHHHHH-------
Confidence 3488999999999999999999999999887 899999999996 4 38888777666444433
Q ss_pred HHHHHHhhhhhcc-cCCchHHHHH-----HHHHHHhhccCCCccchhhhcCceeec------------------------
Q 005820 281 RELREVAKGVTKQ-IGGPMHELAA-----KVDEYARGMISGSGSTLFEELGLYYIG------------------------ 330 (676)
Q Consensus 281 ~~~r~~~~~~~~~-~g~~~~~~~~-----k~~~~~~~~~~~~~~~lfea~G~~~~~------------------------ 330 (676)
.+|...|++.|. ||..+.++.+ |+..+......++++++ ++.|=.|+.
T Consensus 281 -~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~-kakdGayvRehff~~~Pe~~aLVa~~tD~diw~ 358 (887)
T COG2609 281 -IFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTF-KAKDGAYVREHFFGRYPETAALVADMTDDDIWA 358 (887)
T ss_pred -HhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhh-cccccHHHHHHHhccChHHHHHHHhccHHHHHH
Confidence 345566666665 3655543332 33333333333333221 221111100
Q ss_pred -cCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccC------------c----cccc--
Q 005820 331 -PVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDP------------A----TGKQ-- 391 (676)
Q Consensus 331 -~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~------------~----~g~~-- 391 (676)
.-.|||+..|.+|+++|+.. .++|++|.++|+||+|.+.+-...+..|.+.+.++ . .++.
T Consensus 359 L~rGGHD~~ki~aA~~~A~~~-kg~PtvilA~TIKGyglg~~~eg~n~aHq~kkm~~~~l~~~Rdr~~ipvsd~e~e~lp 437 (887)
T COG2609 359 LNRGGHDPEKVYAAFKKAQEH-KGRPTVILAKTIKGYGLGEAAEGKNIAHQVKKMTPDQLKEFRDRFGIPVSDAELEELP 437 (887)
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CCCceEEEEeeeccccCchhhcccchhhhhhcCCHHHHHHHHhhcCCCCchhhhhcCC
Confidence 13589999999999999985 36999999999999999744344455677643211 0 0000
Q ss_pred -------------------------------c------c----------cchhhhhHHHHHHHHHHHHHHcC---CCEEE
Q 005820 392 -------------------------------F------K----------SSARTQSYTTYFAEALIAEAEVD---KDVVA 421 (676)
Q Consensus 392 -------------------------------~------~----------~~~~~~~~~~a~~~aL~~~~~~d---~~iv~ 421 (676)
+ + ...+..+.+.+|...|.++++++ ++||.
T Consensus 438 y~~~g~~s~E~~yl~~rr~al~g~~p~rr~~~t~~l~vP~l~~~~a~~~~~g~~iSTtmAfvr~l~~llkdk~ig~riVp 517 (887)
T COG2609 438 YYHFGEDSPEYKYLHARRAALGGYLPARRPKFTPALPVPSLSDFQALLKGQGEEISTTMAFVRILNELLKDKEIGKRIVP 517 (887)
T ss_pred cCCCCCCcHHHHHHHHHHHhcCCCCchhcccCCCCccCCcHHHHHHHHhccCccchhHHHHHHHHHHHHhccccCCcccc
Confidence 0 0 01124677889999999999853 57999
Q ss_pred EeccccCccchhhhhhh-------------------------CCCceeeccccHHHHHHH--HHHHHhc--C--CeeEEe
Q 005820 422 IHAAMGGGTGLNLFLRR-------------------------FPTRCFDVGIAEQHAVTF--AAGLACE--G--LKPFCA 470 (676)
Q Consensus 422 i~aD~~gs~~l~~f~~~-------------------------~p~R~id~GIaE~~~v~~--A~GlA~~--G--~~p~~~ 470 (676)
+.+|...++|++++..+ -.++.+..||+|.++++. |+|.++. | +.||..
T Consensus 518 iipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQiLqeGInE~ga~~sw~AagtSys~~~~pmiPfyi 597 (887)
T COG2609 518 IIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQILQEGINEAGAFASWIAAGTSYSTHGEPMIPFYI 597 (887)
T ss_pred ccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCCCcchHHhhhccccHHHHHHHHhcccccCCccceeeee
Confidence 99999988888665321 147899999999999884 6666653 5 789999
Q ss_pred echhH-HHHHHHHHHHhhhcCCCCEEEEe-ecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh
Q 005820 471 IYSSF-MQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 547 (676)
Q Consensus 471 t~~~F-l~ra~dqi~~~~a~~~lpV~iv~-~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~ 547 (676)
.|++| +||..|-+ +.+|.|...-.+++ +.++. ....|-.|+.....-+-..+||++.|.|+.+.|+.-+++.++++
T Consensus 598 ~YsmFgfqRigD~~-waA~dq~ARgFLlgaTagrtTLngEGlqHedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~r 676 (887)
T COG2609 598 YYSMFGFQRIGDLL-WAAGDQDARGFLLGATAGRTTLNGEGLQHEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRR 676 (887)
T ss_pred eechhhhhhHHHHH-HHHHhhhhcceeEeecCCCceeCccccccccccchhhhhcCCCccccCchHHHHHHHHHHHHHHH
Confidence 99999 89999964 67899998844444 44444 33457788876554455678999999999999999999999984
Q ss_pred CC------CCeEEEecCCCCccccCCCCCCCCccccCce-eEeec-----CCcEEEEEechhHHHHHHHHHHHHh-CCCc
Q 005820 548 DD------RPSCFRYPRGNGIGVELPPGNKGIPLEVGKG-RILIE-----GERVALLGYGTAVQSCLAASALLES-NGLR 614 (676)
Q Consensus 548 ~~------~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~-~vl~e-----G~dv~Iva~Gs~v~~aleAa~~L~~-~Gi~ 614 (676)
-- .-.||++...+++.-..|.+ ..-.+-|+ |.++. +..|.|+++|....+|++|++.|++ .|+.
T Consensus 677 my~~~qe~v~yYlt~~ne~~~qPamp~g---ae~gI~kG~Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~ 753 (887)
T COG2609 677 MYGEGQENVFYYITLSNENYPQPAMPEG---AEEGIIKGIYKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVE 753 (887)
T ss_pred HhccCcCCcEEEEEeccCcCCCCCCCCc---chhhhhhceeEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccc
Confidence 22 23566766655443333332 22233343 55543 3589999999999999999999987 6999
Q ss_pred EEEEEccccCcCcH
Q 005820 615 LTVADARFCKPLDH 628 (676)
Q Consensus 615 v~VId~~~l~P~d~ 628 (676)
+.|.++.|..-+..
T Consensus 754 adl~svtS~~eL~r 767 (887)
T COG2609 754 ADLWSVTSFDELAR 767 (887)
T ss_pred cCeeecccHHHHhc
Confidence 99999998766543
No 33
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=100.00 E-value=8.2e-44 Score=353.87 Aligned_cols=195 Identities=72% Similarity=1.210 Sum_probs=177.2
Q ss_pred CCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchh
Q 005820 113 GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTS 192 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ 192 (676)
+||+|++||++|++++||++|+.||||||+|+||++|++++++|++++|.+||+.++++|||++.+++++.+++|++|++
T Consensus 1 ~gh~g~~ls~~~i~~~L~~~~~~~rDr~ils~gH~~~~~~~~~g~~~~l~~~~~~~~~~g~p~~~~~~~~~~~~G~lG~g 80 (195)
T cd02007 1 GGHLGSNLGVVELTLALHYVFDSPKDKIIWDVGHQAYPHKILTGRRDQFHTLRQYGGLSGFTKRSESEYDAFGTGHSSTS 80 (195)
T ss_pred CCCCCcchhHHHHHHHHHHhcCCCCCeEEEecccHHHHHHHHHCCHHHHhhhhcCCCCCCCCcCCCCCCceECCCchhhh
Confidence 69999999999999999999988999999999999999999999999999999999999999998888999999999999
Q ss_pred hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHh
Q 005820 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALS 272 (676)
Q Consensus 193 ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~ 272 (676)
+|+|+|+|+|.|+++++++|||++|||+++||++|||+++|+++++|+++|++||++ ++.+. ..
T Consensus 81 l~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~-~~~~~-----~~---------- 144 (195)
T cd02007 81 ISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEM-SISPN-----VG---------- 144 (195)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCc-ccCCC-----CC----------
Confidence 999999999999999999999999999999999999999999999999999999994 32111 10
Q ss_pred hhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCC
Q 005820 273 RLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKT 352 (676)
Q Consensus 273 ~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~ 352 (676)
+.. .+|+++||.++.++||||++++.++++++++ .
T Consensus 145 ---------------------------~~~----------------~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~~--~ 179 (195)
T cd02007 145 ---------------------------TPG----------------NLFEELGFRYIGPVDGHNIEALIKVLKEVKD--L 179 (195)
T ss_pred ---------------------------CHH----------------HHHHhcCCCccceECCCCHHHHHHHHHHHHh--C
Confidence 111 2288999998866899999999999999986 4
Q ss_pred CCcEEEEEEeccCCCc
Q 005820 353 TGPVLIHVVTEKGRGY 368 (676)
Q Consensus 353 ~~P~lI~v~T~kg~G~ 368 (676)
++|++|+++|.||+||
T Consensus 180 ~~P~~I~~~T~kg~g~ 195 (195)
T cd02007 180 KGPVLLHVVTKKGKGY 195 (195)
T ss_pred CCCEEEEEEEecccCc
Confidence 7999999999999997
No 34
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=100.00 E-value=2.8e-44 Score=382.07 Aligned_cols=233 Identities=32% Similarity=0.540 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHhh-cc----CC----CCccccCcCchH---HHHHHHcCC---h
Q 005820 95 KQLADELRADVIFNVS-KTGGHLGSSLGVIELTVALHYV-FN----AP----KDRILWDVGHQT---YPHKILTGR---R 158 (676)
Q Consensus 95 ~~la~~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~~-~~----~p----~D~~i~s~gH~~---y~~~~l~G~---~ 158 (676)
+++|++||.++++|+. .++||+|++||++|++++||.. ++ +| |||||+|+||.+ |+.+++.|+ .
T Consensus 2 ~~~a~~iR~~~~~~~~~a~sGH~G~~ls~a~i~~~Ly~~~l~~~p~~p~~~~rDrfvlSkGH~~~~lYa~l~~~G~~~~~ 81 (332)
T PF00456_consen 2 KRIANTIRKLILDMVQKAGSGHPGSSLSAADILYALYFKVLRYDPKNPKWPNRDRFVLSKGHASPALYAILALRGYDLSE 81 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT-BBBTTBTTSTTS-EEEESSGGGHHHHHHHHHHTTSSS-H
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHhhccccCCccccCCCCCcEEEeccchhHHHHHHHHHhcCCCCH
Confidence 5689999999999997 5899999999999999999863 32 33 899999999999 999999997 4
Q ss_pred HHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccchH
Q 005820 159 DKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAY 227 (676)
Q Consensus 159 ~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~~~ 227 (676)
++|.+||+.|+ ++|||+....++..+++|++|+|+++|+|||+|.|+++ .+++|||++|||+++||++|
T Consensus 82 ~~L~~fr~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~ 161 (332)
T PF00456_consen 82 EDLKTFRQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVW 161 (332)
T ss_dssp HHHTTTTSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHH
T ss_pred HHHHHhccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhH
Confidence 78999999998 79999977789999999999999999999999998753 36889999999999999999
Q ss_pred HHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHH
Q 005820 228 EAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD 306 (676)
Q Consensus 228 EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~ 306 (676)
||+.+|++++ .|||+|+|+|+. ++ ||.+..+ + .+++.++
T Consensus 162 EA~~~A~~~~L~nLi~i~D~N~~-q~-----dg~~~~~--~------------------------------~~~~~~k-- 201 (332)
T PF00456_consen 162 EAASLAGHYKLDNLIVIYDSNGI-QI-----DGPTDIV--F------------------------------SEDIAKK-- 201 (332)
T ss_dssp HHHHHHHHTT-TTEEEEEEEESE-ET-----TEEGGGT--H------------------------------HSHHHHH--
T ss_pred HHHHHHHHhCCCCEEEEEecCCc-cc-----CCCcccc--c------------------------------chHHHHH--
Confidence 9999999998 889999999993 33 4433211 0 1455555
Q ss_pred HHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc
Q 005820 307 EYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK 383 (676)
Q Consensus 307 ~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~ 383 (676)
|++|||+++.+.||||+++|.+|+++++.. .++|++|+++|+||+|++.+|+. .+|||.++
T Consensus 202 --------------~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~-~~~Hg~~l 262 (332)
T PF00456_consen 202 --------------FEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGT-AKWHGSPL 262 (332)
T ss_dssp --------------HHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTS-GGGTSS--
T ss_pred --------------HHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhccc-chhhccCC
Confidence 999999998545999999999999999874 48999999999999999988864 68999763
No 35
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.9e-43 Score=347.04 Aligned_cols=273 Identities=26% Similarity=0.431 Sum_probs=239.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCEEEEecccc---Cccch-hhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEee
Q 005820 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (676)
Q Consensus 397 ~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~---gs~~l-~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t 471 (676)
+..+.++|++++|.++|++|+++++++++++ |+.++ .++.++| +.|++|++|+|.+..|+|.|+|+.|+||+|+.
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~ef 112 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICEF 112 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhhh
Confidence 3568899999999999999999999999976 55554 6788888 57999999999999999999999999999996
Q ss_pred -chhHHHHHHHHHHHhhhc--------CCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHH
Q 005820 472 -YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (676)
Q Consensus 472 -~~~Fl~ra~dqi~~~~a~--------~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~ 542 (676)
-..|...++|||+|.+++ +++|++|.+.. |....-|.+|++.+. +|+.++||++|++|.+++|++++++
T Consensus 113 MtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPn-G~~~gv~AqHSQ~f~-~wy~siPGlkvvapysaedakGLlK 190 (359)
T KOG0524|consen 113 MTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPN-GAAAGVAAQHSQDFA-SWYGSIPGLKVVAPYSAEDAKGLLK 190 (359)
T ss_pred hcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCC-CcccchhhhhhhhhH-HHhccCCCceEeccCChhhhhhHHH
Confidence 788999999999999874 57888888644 332335789999987 7999999999999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCCcccc--CCC--CCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q 005820 543 TAAAIDDRPSCFRYPRGNGIGVE--LPP--GNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 618 (676)
Q Consensus 543 ~al~~~~~P~~ir~~r~~~~~~~--~p~--~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VI 618 (676)
.|++ +++|+++.+.. .++... +|+ -.+++..++||+.+.|+|+|+|||++.-++..|++||+.|.++|++++||
T Consensus 191 aAIR-d~NPVV~lEne-lLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVI 268 (359)
T KOG0524|consen 191 AAIR-DENPVVFLENE-LLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVI 268 (359)
T ss_pred Hhcc-CCCCeEEEech-hhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeE
Confidence 9986 89999998764 333332 332 12457789999999999999999999999999999999999999999999
Q ss_pred EccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccccc
Q 005820 619 DARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVKVR 673 (676)
Q Consensus 619 d~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~~~ 673 (676)
|+|+|+|||.++|..+++++.++++||++. .+|+|++|++.+.|+.| ||+|+...
T Consensus 269 nlrSirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rv 326 (359)
T KOG0524|consen 269 NLRSIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRV 326 (359)
T ss_pred eeeccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhh
Confidence 999999999999999999999999999997 79999999999999865 99998754
No 36
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.5e-40 Score=387.32 Aligned_cols=418 Identities=17% Similarity=0.167 Sum_probs=303.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCC------CCeEEEEEcCCcc-cccchHHHHHHhhhcCCCE---EEEEECCCCCccCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGR------KNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDM---IVILNDNKQVSLPT 254 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~------~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~l---i~Iv~dN~~~s~~t 254 (676)
..+|++...|+|+|.|.|.++++. +..++|++|||++ ++|.+||+||+|+.|+.|+ |+||+||+ +++.|
T Consensus 313 npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNq-yg~tT 391 (929)
T TIGR00239 313 NPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQ-IGFTT 391 (929)
T ss_pred CCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCC-EEEEE
Confidence 457899999999999999988765 5678999999997 7999999999999999997 99999998 45554
Q ss_pred cCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCC
Q 005820 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 334 (676)
Q Consensus 255 ~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdG 334 (676)
...+..+. ....+ +++++|+..+ .|||
T Consensus 392 ~~~~~~s~------------------------------------~~~sd----------------~Ak~ygiP~~-~VDG 418 (929)
T TIGR00239 392 NPLDARST------------------------------------PYCSD----------------LAKMIQAPIF-HVNA 418 (929)
T ss_pred cHHHhcCc------------------------------------cCHHH----------------HheecCCCEE-EECC
Confidence 32211110 11122 2678899877 8999
Q ss_pred CCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhhhhh-------ccc--CCcc--c------------------
Q 005820 335 HNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAA-------DKY--HGVA--K------------------ 383 (676)
Q Consensus 335 hd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~~-------~~~--H~~~--~------------------ 383 (676)
+|++++..+.+.|.+. +.++|++|++.|++-.|+....... ..+ |--+ .
T Consensus 419 ~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~ 498 (929)
T TIGR00239 419 DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKIKKHPTPRKVYADKLVSEGVATEEDVTE 498 (929)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999888765432 3689999999999999986432110 000 1100 0
Q ss_pred ------------c---------cC-----------------cccc----------c---ccc------------------
Q 005820 384 ------------F---------DP-----------------ATGK----------Q---FKS------------------ 394 (676)
Q Consensus 384 ------------f---------d~-----------------~~g~----------~---~~~------------------ 394 (676)
+ +. .|+- + .++
T Consensus 499 i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~ 578 (929)
T TIGR00239 499 MVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHSRVAKIYFDRTKA 578 (929)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccHHHHHHHHHHHHH
Confidence 0 00 0110 0 000
Q ss_pred ---chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCcc-----------------c-hhhhhhhC-CCceeeccccHHH
Q 005820 395 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT-----------------G-LNLFLRRF-PTRCFDVGIAEQH 452 (676)
Q Consensus 395 ---~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~-----------------~-l~~f~~~~-p~R~id~GIaE~~ 452 (676)
.....+|.+|...+|..+|++|++|+++++|++.+| + +.++.++| +.|++|++|+|.+
T Consensus 579 ~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a 658 (929)
T TIGR00239 579 MAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEES 658 (929)
T ss_pred HhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHH
Confidence 001246889999999999999999999999997532 1 35677777 7999999999999
Q ss_pred HHHHHHHHHhcCCeeE--Eee-chhHHH---HHHHHHHHh-hhcC--CCCEEEEeecCCCcCCCCCCCCChhhHhHh--h
Q 005820 453 AVTFAAGLACEGLKPF--CAI-YSSFMQ---RAYDQVVHD-VDLQ--KLPVRFAMDRAGLVGADGPTHCGSFDVTFM--A 521 (676)
Q Consensus 453 ~v~~A~GlA~~G~~p~--~~t-~~~Fl~---ra~dqi~~~-~a~~--~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~--~ 521 (676)
++|++.|+|+.|.+|+ +++ |.+|+. .++||+++. .+++ ..++++.+.++ ..|..+..|++..+ +++ .
T Consensus 659 ~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~G-~~g~g~~hsS~~~E-~~lql~ 736 (929)
T TIGR00239 659 VLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPHG-YEGQGPEHSSGRLE-RFLQLA 736 (929)
T ss_pred HHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCCchhhccCHH-HHHHHh
Confidence 9999999999998775 887 999984 779999887 3543 45677777765 34443444544444 577 7
Q ss_pred cCCCCEEEecCCHHHHHHHHH-HHHHhCCCCeEEEecCCCCcc-------ccCCCCCCCCccccCcee-----EeecCCc
Q 005820 522 CLPNMVVMAPSDEAELFHMVA-TAAAIDDRPSCFRYPRGNGIG-------VELPPGNKGIPLEVGKGR-----ILIEGER 588 (676)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~~~-~al~~~~~P~~ir~~r~~~~~-------~~~p~~~~~~~~~~gk~~-----vl~eG~d 588 (676)
+.|||+|+.|++|.+++++++ .+++..++|+++..||..+.. .++|++ .+..+++... +.+++-+
T Consensus 737 ~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~--~f~~~i~~~~~~~~~~~~~~v~ 814 (929)
T TIGR00239 737 AEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEG--TFQPVIGEIEESGLSLDPEGVK 814 (929)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCC--CcccccccccccccccCccCCc
Confidence 889999999999999999999 587645899999999865321 124432 2344453311 1223444
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC----CEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~----~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
.+|+++| ++..++++ ++++++|++++|||+++|+|||++.|.++++++ +.|++-||....|-.++|...|.+
T Consensus 815 ~vv~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~ 890 (929)
T TIGR00239 815 RLVLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLRE 890 (929)
T ss_pred EEEEECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHH
Confidence 5555555 88888877 667778999999999999999999999988887 466666666677766788777764
No 37
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=100.00 E-value=4.9e-42 Score=365.31 Aligned_cols=230 Identities=24% Similarity=0.311 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHHhhh-cC------CCCCCCccHHHHHHHHHh-hccC-----CCCccccCcCchH---HHHHHHcCC-
Q 005820 95 KQLADELRADVIFNVSK-TG------GHLGSSLGVIELTVALHY-VFNA-----PKDRILWDVGHQT---YPHKILTGR- 157 (676)
Q Consensus 95 ~~la~~iR~~i~~~v~~-~~------GH~~sslg~~el~~aL~~-~~~~-----p~D~~i~s~gH~~---y~~~~l~G~- 157 (676)
+++.+.+|+.+++|+.+ ++ ||+|++||++||+++||+ +++. ++|| |+|+||++ |++++++|+
T Consensus 5 ~~~~~~iR~~i~~mv~~a~s~~~~~gGH~G~slS~adI~~aLy~~~l~~~p~~~~RDR-vlSkGHas~~lYA~L~l~G~~ 83 (386)
T cd02017 5 RRIRSLIRWNAMAMVHRANKKDLGIGGHIATFASAATLYEVGFNHFFRARGEGGGGDL-VYFQGHASPGIYARAFLEGRL 83 (386)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCCCCCcchhHHHHHHHHHHHhcCCCCCCCCCCE-EEeCCcccHHHHHHHHHcCCC
Confidence 34569999999999974 43 999999999999999984 5542 3899 88999999 999999997
Q ss_pred -hHHhhhhHhcCC---CCCCCCCCCCCC-cccCCCccchhhHHHHHHHHHchh-------cCCCCeEEEEEcCCcccccc
Q 005820 158 -RDKMHTMRQTDG---LSGFTKRSESEY-DCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 158 -~~~l~~~r~~~g---l~g~~~~~es~~-~~~g~G~~G~~ls~A~G~AlA~~~-------~~~~~~vv~viGDGa~~eG~ 225 (676)
.++|.+|||.++ +++||++.+.++ ..+++|++|+++++|+|||+|.|+ .+.+++|||++|||+++||+
T Consensus 84 ~~edL~~fr~~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~ 163 (386)
T cd02017 84 TEEQLDNFRQEVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPE 163 (386)
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHH
Confidence 488999999998 899998876555 788999999999999999999998 56789999999999999999
Q ss_pred hHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHH
Q 005820 226 AYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (676)
Q Consensus 226 ~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k 304 (676)
+|||+++|++++ .|||+|+|+|++ ++ ||++..++. ..+++.+|
T Consensus 164 vwEA~~~Ag~~kL~NLivIvD~N~~-qi-----dG~t~~v~~------------------------------~~e~l~~k 207 (386)
T cd02017 164 SLGAIGLAAREKLDNLIFVVNCNLQ-RL-----DGPVRGNGK------------------------------IIQELEGI 207 (386)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCC-cc-----CCccccccc------------------------------CchhHHHH
Confidence 999999999988 799999999994 43 555443321 12577777
Q ss_pred HHHHHhhccCCCccchhhhcCceeeccCC---------------------------------------------------
Q 005820 305 VDEYARGMISGSGSTLFEELGLYYIGPVD--------------------------------------------------- 333 (676)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vd--------------------------------------------------- 333 (676)
|++|||+++ .||
T Consensus 208 ----------------f~AfGW~vi-~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~ 270 (386)
T cd02017 208 ----------------FRGAGWNVI-KVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPEL 270 (386)
T ss_pred ----------------HHhcCCEEE-EEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHH
Confidence 999999988 576
Q ss_pred ------------------CCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcc-hhhhhhcccCC
Q 005820 334 ------------------GHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYP-YAEKAADKYHG 380 (676)
Q Consensus 334 ------------------Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~-~ae~~~~~~H~ 380 (676)
|||+++|.+||+++++. .++|++|+++|+||+|.+ ++|+. ..||+
T Consensus 271 ~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~-~~kPt~Iia~TikG~G~~~~~e~~-~~~h~ 334 (386)
T cd02017 271 KALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH-KGKPTVILAKTIKGYGLGAAGEGR-NHAHQ 334 (386)
T ss_pred HHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC-CCCCeEEEEeCeecCCCChhccCC-cchhc
Confidence 99999999999998864 478999999999999998 46654 57886
No 38
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=100.00 E-value=2e-39 Score=336.02 Aligned_cols=227 Identities=31% Similarity=0.514 Sum_probs=193.6
Q ss_pred HHHHHHHHHhh-hcCCCCCCCccHHHHHHHHHhhc-c----C----CCCccccCcCchH---HHHHHHcCC--hHHhhhh
Q 005820 100 ELRADVIFNVS-KTGGHLGSSLGVIELTVALHYVF-N----A----PKDRILWDVGHQT---YPHKILTGR--RDKMHTM 164 (676)
Q Consensus 100 ~iR~~i~~~v~-~~~GH~~sslg~~el~~aL~~~~-~----~----p~D~~i~s~gH~~---y~~~~l~G~--~~~l~~~ 164 (676)
+||+++++|+. .++||+++++|++|++++||+.+ + + ++|+||+|+||++ |++++++|+ .++|.+|
T Consensus 2 ~~R~~~~~~~~~~~~gh~g~~~s~~~i~~~L~~~~~~~~~~~~~~~~rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~ 81 (255)
T cd02012 2 RIRRLSIDMVQKAGSGHPGGSLSAADILAVLYFKVLKYDPADPKWPNRDRFVLSKGHASPALYAVLALAGYLPEEDLKTF 81 (255)
T ss_pred hHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHhCcCCcCCCCCCCCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHh
Confidence 69999999996 58899999999999999999654 2 1 3799999999999 778999997 4889999
Q ss_pred HhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCC-CEEE
Q 005820 165 RQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIV 242 (676)
Q Consensus 165 r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~-~li~ 242 (676)
|+.|+ ++|||++..+++..+++|++|+++|+|+|+|+|.++.+++++|||++|||++++|++||++++|+.+++ |+++
T Consensus 82 ~~~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~ 161 (255)
T cd02012 82 RQLGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIA 161 (255)
T ss_pred cccCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEE
Confidence 99986 899999888888889999999999999999999999999999999999999999999999999999995 6999
Q ss_pred EEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhh
Q 005820 243 ILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFE 322 (676)
Q Consensus 243 Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfe 322 (676)
|+|||++ ++.. ..... + ...++. .+|+
T Consensus 162 vvdnN~~-~~~~-----~~~~~--~-----------------------------~~~~~~----------------~~~~ 188 (255)
T cd02012 162 IVDSNRI-QIDG-----PTDDI--L-----------------------------FTEDLA----------------KKFE 188 (255)
T ss_pred EEECCCc-cccC-----cHhhc--c-----------------------------CchhHH----------------HHHH
Confidence 9999984 3211 11000 0 012333 3499
Q ss_pred hcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc
Q 005820 323 ELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (676)
Q Consensus 323 a~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~ 382 (676)
+|||+++ .|||||+++|.++|+++++. .++|++|+++|.||+|++++|+ ..+||+.+
T Consensus 189 a~G~~~~-~v~G~d~~~l~~al~~a~~~-~~~P~~I~~~t~kg~g~~~~e~-~~~~H~~~ 245 (255)
T cd02012 189 AFGWNVI-EVDGHDVEEILAALEEAKKS-KGKPTLIIAKTIKGKGVPFMEN-TAKWHGKP 245 (255)
T ss_pred HcCCeEE-EECCCCHHHHHHHHHHHHHc-CCCCEEEEEEeecccccCccCC-CccccCCC
Confidence 9999988 78999999999999998863 2799999999999999999885 56889765
No 39
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-35 Score=288.87 Aligned_cols=270 Identities=21% Similarity=0.344 Sum_probs=229.4
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCEEEEeccccCc--c-chhhhhhhCC-CceeeccccHHHHHHHHHHHHhcCCeeEEee-
Q 005820 397 RTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGG--T-GLNLFLRRFP-TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI- 471 (676)
Q Consensus 397 ~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs--~-~l~~f~~~~p-~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t- 471 (676)
++....++++++|.-.++.||+-+++++|++-+ + -..+++++|. +|+||++++||+++|+.+|+|..|.+.+.++
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiq 118 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQ 118 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchHHHhCccccccCchhhcccceechhhhhcccceEEEEe
Confidence 456778899999999999999999999998722 2 1357888885 8999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhcC--------CCC-EEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHH
Q 005820 472 YSSFMQRAYDQVVHDVDLQ--------KLP-VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a~~--------~lp-V~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~ 542 (676)
|++++..|||||+|.+++- ++- ..+. ...|.+|+.|-.|++..+ +++.+.||++|+.|..|.|+++++.
T Consensus 119 fadyifpafdqivneaakfryrsgnqfncg~ltir-~p~gavghg~~yhsqspe-aff~h~pgikvviprsp~qakglll 196 (362)
T KOG0525|consen 119 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIR-APWGAVGHGALYHSQSPE-AFFCHVPGIKVVIPRSPRQAKGLLL 196 (362)
T ss_pred eccccchhHHHHHHHHHhheeccCCccccCceEEe-ccccccccccccccCCch-hheecCCCceEEecCCcchhhceee
Confidence 9999999999999999853 222 3444 334668888999999988 7999999999999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCC--ccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHH-hCCCcEEEEE
Q 005820 543 TAAAIDDRPSCFRYPRGNG--IGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLE-SNGLRLTVAD 619 (676)
Q Consensus 543 ~al~~~~~P~~ir~~r~~~--~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~-~~Gi~v~VId 619 (676)
.+++ +.+|+++++|+-.+ ...++|+ .+|.++++.+.++|+|+|+++|+||..++.++|+|..-+ +.|++++|||
T Consensus 197 scir-dpnp~iffepk~lyr~a~edvp~--~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek~giscevid 273 (362)
T KOG0525|consen 197 SCIR-DPNPCIFFEPKILYRQAVEDVPE--GDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEKLGISCEVID 273 (362)
T ss_pred eecc-CCCceEEechHHHHHHhhhhCCC--CCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHhcCCceEEEe
Confidence 9986 89999999997532 1234665 468999999999999999999999999999999987654 4599999999
Q ss_pred ccccCcCcHHHHHHHhccCCEE-EEEcCCCCCCHHHHHHHHHHHcCC--CCCccc
Q 005820 620 ARFCKPLDHALIRSLAKSHEVL-ITVEEGSIGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 620 ~~~l~P~d~e~i~~~~~~~~~v-IvvEe~~~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
+++|-|+|++.+.++++++.++ |+.|...+||||++|+..+.|++| |.+|+.
T Consensus 274 lkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapis 328 (362)
T KOG0525|consen 274 LKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPIS 328 (362)
T ss_pred eecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchh
Confidence 9999999999999887776555 455555689999999999999998 566664
No 40
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=1.4e-34 Score=278.12 Aligned_cols=154 Identities=50% Similarity=0.823 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHH
Q 005820 404 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQV 483 (676)
Q Consensus 404 a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi 483 (676)
+++++|.+++++||+++++++|++.++++.+|+++||+||+|+||+|++|+++|+|+|+.|++|++++|..|++|++|||
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~~~~~~~~~~p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~~~f~~ra~dqi 81 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGSTGLDKFAKKFPDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTFSFFLQRAYDQI 81 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHhCCCCeEEeChhHHHHHHHHHHHHHCCCeEEEEECHHHHHHHHHHH
Confidence 68899999999999999999999988889999999999999999999999999999999999999999988999999999
Q ss_pred HHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecC
Q 005820 484 VHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558 (676)
Q Consensus 484 ~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r 558 (676)
+++++++++||+++++++|+ .|++|+|||+.+|+++++++||++|++|+|++|++.++++|++ .++|++||++|
T Consensus 82 ~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~-~~~P~~irl~~ 156 (156)
T cd07033 82 RHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALE-YDGPVYIRLPR 156 (156)
T ss_pred HHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEeeC
Confidence 99999999999999999888 5689999999999999999999999999999999999999998 56799999986
No 41
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.98 E-value=7.6e-32 Score=261.03 Aligned_cols=152 Identities=29% Similarity=0.412 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHcCCCEEEEeccccCc----cchhhhhhhCCC-ceeeccccHHHHHHHHHHHHhcCCeeEEe-echhHHH
Q 005820 404 YFAEALIAEAEVDKDVVAIHAAMGGG----TGLNLFLRRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQ 477 (676)
Q Consensus 404 a~~~aL~~~~~~d~~iv~i~aD~~gs----~~l~~f~~~~p~-R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t~~~Fl~ 477 (676)
+++++|.+++++||+++++++|++.+ ..++.|+++||+ ||||+||+|++++++|+|+|++|++||++ +|++|++
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ 81 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHH
Confidence 68899999999999999999998642 346899999999 99999999999999999999999999999 5999999
Q ss_pred HHHHHHHHhhhcC--------CCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCC
Q 005820 478 RAYDQVVHDVDLQ--------KLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 549 (676)
Q Consensus 478 ra~dqi~~~~a~~--------~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~ 549 (676)
|++|||+++++++ ++||++++.++| .+.+|+||+ .+|+++|+++|||+|++|+|+.|+..+++++++ .+
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg-~~~~G~ths-~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~-~~ 158 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGG-GIGGGAQHS-QSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIR-DD 158 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCC-CCCcChhhh-hhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh-CC
Confidence 9999999999986 499999987766 567899976 567899999999999999999999999999997 67
Q ss_pred CCeEEEecC
Q 005820 550 RPSCFRYPR 558 (676)
Q Consensus 550 ~P~~ir~~r 558 (676)
+|+++++||
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999885
No 42
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.97 E-value=9e-32 Score=264.20 Aligned_cols=163 Identities=41% Similarity=0.555 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCC---CceeeccccHHHHHHHHHHHHhcC--CeeEEeec
Q 005820 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFP---TRCFDVGIAEQHAVTFAAGLACEG--LKPFCAIY 472 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p---~R~id~GIaE~~~v~~A~GlA~~G--~~p~~~t~ 472 (676)
+.+|+++++++|.+++++|++|+++++|+++++....+.+.+| +||||+||+|++|+++|+|+|+.| ++|++.+|
T Consensus 2 k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f 81 (178)
T PF02779_consen 2 KISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVESTF 81 (178)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred CccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEeec
Confidence 4689999999999999999999999999998887766665555 599999999999999999999999 77777889
Q ss_pred hhHHH----HHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh
Q 005820 473 SSFMQ----RAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI 547 (676)
Q Consensus 473 ~~Fl~----ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~ 547 (676)
++|+. |+++|++++.+++++||. ++.++|+ .|.+|+|||+.+|+++++++|||+|++|+|+.|+++++++++++
T Consensus 82 ~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~ 160 (178)
T PF02779_consen 82 ADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR 160 (178)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS
T ss_pred cccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHh
Confidence 99998 999999999999999999 7778887 78999999999999999999999999999999999999999984
Q ss_pred -CCCCeEEEecCCCC
Q 005820 548 -DDRPSCFRYPRGNG 561 (676)
Q Consensus 548 -~~~P~~ir~~r~~~ 561 (676)
+++|+|||++|+++
T Consensus 161 ~~~~P~~ir~~r~~~ 175 (178)
T PF02779_consen 161 ESDGPVYIREPRGLY 175 (178)
T ss_dssp SSSSEEEEEEESSEE
T ss_pred CCCCeEEEEeeHHhC
Confidence 58999999999864
No 43
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.96 E-value=3.1e-28 Score=236.77 Aligned_cols=159 Identities=42% Similarity=0.603 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHHHHcCC-CEEEEeccccCccchhhhhhhCCCc-------eeeccccHHHHHHHHHHHHhcCCeeEEee
Q 005820 400 SYTTYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLRRFPTR-------CFDVGIAEQHAVTFAAGLACEGLKPFCAI 471 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~-~iv~i~aD~~gs~~l~~f~~~~p~R-------~id~GIaE~~~v~~A~GlA~~G~~p~~~t 471 (676)
++++++.++|.+++++|+ +++++++|++.++++.. .+.||+| |+|+||+|++++++|+|+|++|++||+++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~-~~~~~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~pi~~~ 79 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGLDR-GGVFPDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRPVVAI 79 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCc-CCccCCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCcEEEe
Confidence 367899999999999955 89999999998877653 5666665 99999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCC
Q 005820 472 YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP 551 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P 551 (676)
|..|+.|++||++++.++++.|+++..+.++..|.+|+|||+.+|+++++++||++|++|+|++|++.+++++++..++|
T Consensus 80 ~~~f~~~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~~~~~p 159 (168)
T smart00861 80 FFTFFDRAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRRDDGP 159 (168)
T ss_pred eHHHHHHHHHHHHHhCcccCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHHHHHHHHHHhCCCCC
Confidence 99999999999998877775665555433333788999999999999999999999999999999999999999755789
Q ss_pred eEEEecCC
Q 005820 552 SCFRYPRG 559 (676)
Q Consensus 552 ~~ir~~r~ 559 (676)
++||++|+
T Consensus 160 ~~i~~~~~ 167 (168)
T smart00861 160 PVIRLERK 167 (168)
T ss_pred EEEEecCC
Confidence 99999875
No 44
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=99.93 E-value=4.9e-25 Score=233.25 Aligned_cols=233 Identities=24% Similarity=0.301 Sum_probs=171.6
Q ss_pred ccCHHHHHHH---HHHHHHHHHHHhh-----hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--
Q 005820 88 NLSIRELKQL---ADELRADVIFNVS-----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR-- 157 (676)
Q Consensus 88 ~~~~~~l~~l---a~~iR~~i~~~v~-----~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~-- 157 (676)
+++.++|..+ -..+|..=-.+.. +.+|..++++|+..+.+++-..++...|+++- +|++++|.+.+|.
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~--~YR~h~~~l~~G~~~ 100 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFP--TYRDHGHLLARGVPL 100 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeec--ccCccccceecCCCH
Confidence 4555554443 4455555444442 46789999999999988887777545699887 9999999999997
Q ss_pred hHHhhhhHhcCCCCCCCCCCC-C------CCccc-CCCccchhhHHHHHHHHHchhcCCCC-eEEEEEcCCcccccchHH
Q 005820 158 RDKMHTMRQTDGLSGFTKRSE-S------EYDCF-GTGHSSTSISAGLGMAVGRDLKGRKN-NVVAVIGDGAMTAGQAYE 228 (676)
Q Consensus 158 ~~~l~~~r~~~gl~g~~~~~e-s------~~~~~-g~G~~G~~ls~A~G~AlA~~~~~~~~-~vv~viGDGa~~eG~~~E 228 (676)
.+.|..+ +|...|.++++. + +...+ +.|.+|++++.|+|+|+|.|++++++ .++|++|||+.++|.+||
T Consensus 101 ~~~~a~~--~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhE 178 (358)
T COG1071 101 KEIMAEL--LGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHE 178 (358)
T ss_pred HHHHHHH--hccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHH
Confidence 3555555 444555555432 2 22334 68999999999999999999999555 999999999999999999
Q ss_pred HHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHH
Q 005820 229 AMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY 308 (676)
Q Consensus 229 Aln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~ 308 (676)
+||+|+.|++|+||+|+||++ +++++...... .+.+..|
T Consensus 179 alN~A~v~klPvvf~ieNN~y-AiSvp~~~q~~------------------------------------~~~~~~r---- 217 (358)
T COG1071 179 ALNFAAVWKLPVVFVIENNQY-AISVPRSRQTA------------------------------------AEIIAAR---- 217 (358)
T ss_pred HHHHHHHhcCCEEEEEecCCc-eeecchhhccc------------------------------------chhHHhh----
Confidence 999999999999999999995 43322110000 0122223
Q ss_pred HhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhhhhhcccC
Q 005820 309 ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAADKYH 379 (676)
Q Consensus 309 ~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~~~~~H 379 (676)
..+||+..+ .|||+|+.+++++.++|.+. .+++|+|||+.|++-.|++.+. ++.+|.
T Consensus 218 ------------a~aygipgv-~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sD-d~~~YR 276 (358)
T COG1071 218 ------------AAAYGIPGV-RVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSD-DPSKYR 276 (358)
T ss_pred ------------hhccCCCeE-EECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCC-CccccC
Confidence 678999988 67999999988888765433 3679999999999999998753 234454
No 45
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.8e-23 Score=231.11 Aligned_cols=470 Identities=20% Similarity=0.244 Sum_probs=295.9
Q ss_pred CCCCCCCccHHHHHHHHHhhccC-CCCc-cccCcCchHH---HHHHHcCC---------------hHHhhhhHhcCCCCC
Q 005820 113 GGHLGSSLGVIELTVALHYVFNA-PKDR-ILWDVGHQTY---PHKILTGR---------------RDKMHTMRQTDGLSG 172 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~-p~D~-~i~s~gH~~y---~~~~l~G~---------------~~~l~~~r~~~gl~g 172 (676)
=||+|++.|+.-+.+.|..+.+. ..+. +|...||..- +..+|.|. ...++.|+-.||+.+
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~PgGi~S 139 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFPGGIGS 139 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCCCCccc
Confidence 49999999999888888665432 2333 4666799872 23345552 244556666788888
Q ss_pred CCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccch---HHHHHHhh-hcCCCEEEEEECCC
Q 005820 173 FTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA---YEAMNNAG-YLDSDMIVILNDNK 248 (676)
Q Consensus 173 ~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~---~EAln~A~-~~~~~li~Iv~dN~ 248 (676)
|..+ +.++..--.|-+|++++.|.|.|+- ++|-.+.|++|||+-.+|.- |-+-.+.. ..+.+++-|+.-|+
T Consensus 140 H~~p-etPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~lNG 214 (793)
T COG3957 140 HVAP-ETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHLNG 214 (793)
T ss_pred ccCC-CCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccccccccccCccccCceeeEEEecc
Confidence 8876 4666555678899999998888754 56999999999997766643 22211111 22378999999999
Q ss_pred CCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCcee
Q 005820 249 QVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYY 328 (676)
Q Consensus 249 ~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~ 328 (676)
+ ++...+.-+ .++ -+++. .+|+.+||..
T Consensus 215 y-kI~npT~la------r~s-----------------------------~~el~----------------~~f~G~Gy~p 242 (793)
T COG3957 215 Y-KIENPTVLA------RIS-----------------------------DEELK----------------ALFEGYGYEP 242 (793)
T ss_pred e-eccCceeee------ecC-----------------------------hHHHH----------------HHHhhCCCce
Confidence 5 443222211 111 02222 3499999987
Q ss_pred eccCCCCCHHHHHHH--------HHH-------hhhc-CCCCcE--EEEEEeccCCCcchhhh-----hhcccCCccc--
Q 005820 329 IGPVDGHNVDDLVAI--------LEE-------VKNT-KTTGPV--LIHVVTEKGRGYPYAEK-----AADKYHGVAK-- 383 (676)
Q Consensus 329 ~~~vdGhd~~~l~~a--------l~~-------a~~~-~~~~P~--lI~v~T~kg~G~~~ae~-----~~~~~H~~~~-- 383 (676)
+ .|+|+|+++..+. +++ +++. ...+|. +|.++|-||++-+.--. ..-+.|.++.
T Consensus 243 ~-~veg~d~~d~hq~mAa~ldt~~~~i~~iq~~ar~~~~~~~p~wPmiilrtPkGwt~p~~idG~~~eg~~raHqvPl~~ 321 (793)
T COG3957 243 V-FVEGADPADMHQLMAAVLDTAFEEIQRIQRRARENNEAIRPRWPMIILRTPKGWTGPVEIDGKKLEGSWRAHQVPLKG 321 (793)
T ss_pred e-EecCCChHHhhhhHHHHHHHHHHHHHHHHHHHHhcccccCccccceeeecCCCCcCceeecceeccccchhccCCCCC
Confidence 6 6789888763222 221 2221 122332 58889999986542111 1123466652
Q ss_pred -----------------------ccCc------------cc-ccc----------------------------ccchhhh
Q 005820 384 -----------------------FDPA------------TG-KQF----------------------------KSSARTQ 399 (676)
Q Consensus 384 -----------------------fd~~------------~g-~~~----------------------------~~~~~~~ 399 (676)
||.. ++ +.. .+...+.
T Consensus 322 ~~~~p~h~~~l~~wl~sy~p~elfde~gaL~~e~~~~ap~~~~Rm~~~p~angg~l~~eL~lPD~r~~~v~~~~~g~~~~ 401 (793)
T COG3957 322 HNLNPAHLLELEEWLKSYKPEELFDEHGALKPELRELAPKGEERMGANPHANGGLLPRELPLPDLRDYAVEVSEPGAVTA 401 (793)
T ss_pred CCCCchhhHHHHHHHHhcChHhhhcccCCCCHHHHHhccccccccCCCCcccCccccccCCCCChhhcCcccCCCCccch
Confidence 2210 00 000 0001123
Q ss_pred hHHHHHHHHHHHHHHcCCC-EEEEeccccCccchhhhhh---h--------------CCCceeeccccHHHHHHHHHHHH
Q 005820 400 SYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNLFLR---R--------------FPTRCFDVGIAEQHAVTFAAGLA 461 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~~-iv~i~aD~~gs~~l~~f~~---~--------------~p~R~id~GIaE~~~v~~A~GlA 461 (676)
.-+.++++.+.+.++.|++ +.++++|...|+++.+.-+ + -.+|+++ .++|+.+.|++.|++
T Consensus 402 ~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwlegy~ 480 (793)
T COG3957 402 ESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEGYL 480 (793)
T ss_pred hhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHHHH
Confidence 3467889999999999887 9999999888877643211 1 1379999 799999999999999
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHhhhc-----------CCCCEEEEeecCCC--cCCCCCCCCChhhHhHh-hcCCC-C
Q 005820 462 CEGLKPFCAIYSSFMQRAYDQVVHDVDL-----------QKLPVRFAMDRAGL--VGADGPTHCGSFDVTFM-ACLPN-M 526 (676)
Q Consensus 462 ~~G~~p~~~t~~~Fl~ra~dqi~~~~a~-----------~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~-~~iP~-l 526 (676)
+.|.+.++++|..|+. ..|.++|.-++ ...|-......++. .+.+|.|||...=+..+ ...++ +
T Consensus 481 LtGr~glf~sYEaF~~-iv~sm~nQh~kwl~v~~e~~wr~~~~Sln~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~~d~v 559 (793)
T COG3957 481 LTGRHGLFASYEAFAH-IVDSMFNQHAKWLKVTREVEWRRPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKSDIV 559 (793)
T ss_pred hcCCccceeeHHHHHH-HHHHHHhhhHHHHHHHHhcccCCCCCcccceeehhhhhcccCCCccCCchHHHHHHhhccCce
Confidence 9999999999999982 23333333332 12332222233444 68999999975544433 33555 5
Q ss_pred EEEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccc-cCCCCCCCCccccCceeEee--cC-CcEEEEEechhH-HHH
Q 005820 527 VVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGV-ELPPGNKGIPLEVGKGRILI--EG-ERVALLGYGTAV-QSC 601 (676)
Q Consensus 527 ~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~-~~p~~~~~~~~~~gk~~vl~--eG-~dv~Iva~Gs~v-~~a 601 (676)
+||.|.|++-+..++.+|++..+.-.+|..+|++.+.. ...+..+...-.++-+.... +| .||++.+.|.+. .++
T Consensus 560 RvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~pq~~t~~qA~~~~~~G~~iwewas~d~gepdvV~A~~Gd~~t~e~ 639 (793)
T COG3957 560 RVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRPQWLTMEQAEKHCTDGAGIWEWASGDDGEPDVVMACAGDVPTIEV 639 (793)
T ss_pred eEecCCCCcchhhhhhHHhhccCceEEEEecCCCcceeecHHHHHHHhhcCcEEEEeccCCCCCCCEEEEecCCcchHHH
Confidence 79999999999999999999878888888888764321 11000001111122222221 23 489999999987 899
Q ss_pred HHHHHHHHhCC--CcEEEEE---ccccCc-------CcHHHHHHHhccCCEEE
Q 005820 602 LAASALLESNG--LRLTVAD---ARFCKP-------LDHALIRSLAKSHEVLI 642 (676)
Q Consensus 602 leAa~~L~~~G--i~v~VId---~~~l~P-------~d~e~i~~~~~~~~~vI 642 (676)
++|+.+|++++ ++++||+ +..+.| ++.+...++.-+.+.+|
T Consensus 640 laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvi 692 (793)
T COG3957 640 LAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVI 692 (793)
T ss_pred HHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCccee
Confidence 99999999988 7777655 445544 33445555544445444
No 46
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.92 E-value=8.1e-24 Score=227.25 Aligned_cols=227 Identities=21% Similarity=0.251 Sum_probs=165.2
Q ss_pred cccccccCHHHHHHHH-HHHHHHHHH--Hhh-----hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHH
Q 005820 83 PIHMKNLSIRELKQLA-DELRADVIF--NVS-----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKIL 154 (676)
Q Consensus 83 ~~~~~~~~~~~l~~la-~~iR~~i~~--~v~-----~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l 154 (676)
+.|.++++.++|.++= .-++.+.++ +.. +..|+++++.|...+.+++-..+ .|+|+++. .|++++|.+.
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la 87 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLL-AETDYVCS--TYRDHVHALS 87 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhC-CCCCEEEc--ccccHHHHHH
Confidence 3556667777655542 222222222 221 23588999999998888877777 56899988 9999999999
Q ss_pred cCC--hHHhhhhHhcCCCCCCCCCC-------CCCCccc-CCCccchhhHHHHHHHHHchhcC-------CCCeEEEEEc
Q 005820 155 TGR--RDKMHTMRQTDGLSGFTKRS-------ESEYDCF-GTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIG 217 (676)
Q Consensus 155 ~G~--~~~l~~~r~~~gl~g~~~~~-------es~~~~~-g~G~~G~~ls~A~G~AlA~~~~~-------~~~~vv~viG 217 (676)
.|. .+.|..+ +|.-.|+++++ ..+...+ +.|++|+++|+|+|+|+|.++++ +++.|+|++|
T Consensus 88 ~G~~~~~~~ae~--~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~G 165 (341)
T CHL00149 88 KGVPPKNVMAEL--FGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFG 165 (341)
T ss_pred cCCCHHHHHHHH--cCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeC
Confidence 996 3445555 34334433322 2233334 56999999999999999999887 5899999999
Q ss_pred CCcccccchHHHHHHhhhcCCCEEEEEECCCC-CccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCC
Q 005820 218 DGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGG 296 (676)
Q Consensus 218 DGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~-~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~ 296 (676)
||++++|++||+||+|+.|++|+||||+||++ ++.++....
T Consensus 166 DGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~-------------------------------------- 207 (341)
T CHL00149 166 DGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRST-------------------------------------- 207 (341)
T ss_pred CchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhee--------------------------------------
Confidence 99999999999999999999999999999994 333221100
Q ss_pred chHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH----HHHhhhcCCCCcEEEEEEeccCCCcchh
Q 005820 297 PMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI----LEEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 297 ~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a----l~~a~~~~~~~P~lI~v~T~kg~G~~~a 371 (676)
...++.. ++++||+..+ .|||+|..++.++ ++++++ .++|++|++.|++..|++..
T Consensus 208 ~~~d~a~----------------~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR~~gHs~~ 267 (341)
T CHL00149 208 SIPEIHK----------------KAEAFGLPGI-EVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYRFRGHSLA 267 (341)
T ss_pred CCccHHH----------------HHHhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEecCCCcCCC
Confidence 0023333 3889999988 7899999876654 455554 57999999999999999854
No 47
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.91 E-value=1.9e-23 Score=225.08 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=150.5
Q ss_pred CCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCC-------CCCCcc
Q 005820 113 GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS-------ESEYDC 183 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~-------es~~~~ 183 (676)
.|+.+.+.|...+.+++-..+ .|.|+++. .|+.++|.+..|. .+.|..+ +|.-.|++++. ..+...
T Consensus 59 ~g~~~~~~GqEA~~vg~~~aL-~~~D~~~~--~yR~hg~~la~G~~~~~~~ae~--~g~~~g~~~GrggsmH~~~~~~~~ 133 (362)
T PLN02269 59 RGFCHLYDGQEAVAVGMEAAI-TKEDAIIT--AYRDHCTHLGRGGTVLEVFAEL--MGRKDGCSRGKGGSMHFYKKDANF 133 (362)
T ss_pred ccccCCCCChHHHHHHHHHhc-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCcccccchhcCc
Confidence 488999999999888776666 47899988 8999999999997 3445444 34444544432 122333
Q ss_pred c-CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCC
Q 005820 184 F-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (676)
Q Consensus 184 ~-g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~ 262 (676)
+ ++|++|+++|.|+|+|+|.|++++++.++|++|||++++|.+|||||+|+.|++|+||||+||++ +++|.... ..
T Consensus 134 ~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~-aist~~~~--~~ 210 (362)
T PLN02269 134 YGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHY-GMGTAEWR--AA 210 (362)
T ss_pred cccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCE-eccCchhh--hc
Confidence 3 57999999999999999999999999999999999999999999999999999999999999994 44332110 00
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 263 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
. ...+.. +++++..+ .|||+|++++.+
T Consensus 211 ~----------------------------------~~~~~~------------------~~~~~p~~-~VDG~D~~av~~ 237 (362)
T PLN02269 211 K----------------------------------SPAYYK------------------RGDYVPGL-KVDGMDVLAVKQ 237 (362)
T ss_pred c----------------------------------chHHHH------------------hhcCCCeE-EECCCCHHHHHH
Confidence 0 011111 12344445 789999999999
Q ss_pred HHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 005820 343 ILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 343 al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 371 (676)
+++.+.+. . ++|++|++.|++-.|++..
T Consensus 238 a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~ 267 (362)
T PLN02269 238 ACKFAKEHALS-NGPIVLEMDTYRYHGHSMS 267 (362)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCcCCCcCCC
Confidence 99876542 3 7899999999999999754
No 48
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.91 E-value=4.7e-23 Score=217.89 Aligned_cols=201 Identities=23% Similarity=0.280 Sum_probs=155.5
Q ss_pred hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCC--------CCC
Q 005820 111 KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS--------ESE 180 (676)
Q Consensus 111 ~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~--------es~ 180 (676)
+..|+..++.|...+.+++...++ |+|+++. .|++++|.+.+|. .+.|..+ +|...|..++. ...
T Consensus 23 ~~~~~~~~~~GqEa~~vg~~~~l~-~~D~~~~--~yR~~~~~la~G~~~~~~~~e~--~g~~~g~~~G~~g~~h~~~~~~ 97 (293)
T cd02000 23 KIGGFYHLSIGQEAVAVGVAAALR-PGDWVFP--TYRDHGHALARGVDLKEMLAEL--FGKETGPCKGRGGSMHIGDKEK 97 (293)
T ss_pred ccccccCCCCChHHHHHHHHHHCC-CCCEEEe--cchhHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCCCCCCchhc
Confidence 456778899999999999988884 7898876 9999999999997 3444444 33333433321 123
Q ss_pred CcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCC
Q 005820 181 YDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGP 260 (676)
Q Consensus 181 ~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~ 260 (676)
....++|++|+++|+|+|+|+|.++.+++++|||++|||++++|.+||+||+|+.+++|+++||+||+ +++.+.....
T Consensus 98 ~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~~~- 175 (293)
T cd02000 98 NFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTSRQ- 175 (293)
T ss_pred CccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHHHH-
Confidence 33457899999999999999999999999999999999999999999999999999999999999998 3443211000
Q ss_pred CCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHH
Q 005820 261 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 340 (676)
Q Consensus 261 ~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l 340 (676)
.-.++...++++||+.++ .|||+|++++
T Consensus 176 ---------------------------------------------------~~~~~~~~~a~a~G~~~~-~Vdg~d~~~v 203 (293)
T cd02000 176 ---------------------------------------------------TAGTSIADRAAAYGIPGI-RVDGNDVLAV 203 (293)
T ss_pred ---------------------------------------------------hCCccHHHHHHhCCCCEE-EECCCCHHHH
Confidence 001222344889999987 7899999998
Q ss_pred HHHHHHhhhc--CCCCcEEEEEEeccCCCcch
Q 005820 341 VAILEEVKNT--KTTGPVLIHVVTEKGRGYPY 370 (676)
Q Consensus 341 ~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ 370 (676)
.++++++.+. ..++|++|++.|++..|++.
T Consensus 204 ~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~ 235 (293)
T cd02000 204 YEAAKEAVERARAGGGPTLIEAVTYRLGGHST 235 (293)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEeccCCCCC
Confidence 8887765421 25799999999999999983
No 49
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.90 E-value=1.2e-22 Score=223.08 Aligned_cols=197 Identities=19% Similarity=0.283 Sum_probs=150.6
Q ss_pred CCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCC-------CCCCcc
Q 005820 113 GGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRS-------ESEYDC 183 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~-------es~~~~ 183 (676)
.|+.+.+.|+..+.+++-..+ +|.|+++. .|+.++|.+..|. ++.|.++ +|...|++++. ..+...
T Consensus 115 ~g~~h~~~GqEA~~vg~~~aL-~~~D~v~~--~yR~h~~~La~G~~~~~~mael--~Gk~~g~~~GrggsmH~~~~~~~~ 189 (433)
T PLN02374 115 FGFVHLYNGQEAVSTGFIKLL-KKDDSVVS--TYRDHVHALSKGVPARAVMSEL--FGKATGCCRGQGGSMHMFSKEHNL 189 (433)
T ss_pred eeccCCCCCcHHHHHHHHHHc-CCCCEEEc--cCcChHHhhhcCCCHHHHHHHH--cCCCCCCCCCCCCcCccCchhhCC
Confidence 478888999998888887777 56798877 9999999999996 3445554 33334433322 122333
Q ss_pred c-CCCccchhhHHHHHHHHHchhcC-------CCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCC-CccCc
Q 005820 184 F-GTGHSSTSISAGLGMAVGRDLKG-------RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPT 254 (676)
Q Consensus 184 ~-g~G~~G~~ls~A~G~AlA~~~~~-------~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~-~s~~t 254 (676)
+ +.|++|+++|.|+|+|+|.++++ +++.|||++|||++++|++||+||+|+.|++|+||||+||++ ++.++
T Consensus 190 ~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~ 269 (433)
T PLN02374 190 LGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 269 (433)
T ss_pred CCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeeccee
Confidence 3 56899999999999999999886 489999999999999999999999999999999999999984 33322
Q ss_pred cCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCC
Q 005820 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 334 (676)
Q Consensus 255 ~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdG 334 (676)
.... . ..++..+ +++||+..+ .|||
T Consensus 270 ~~~t---~-----------------------------------~~dia~~----------------A~a~G~~~~-~VDG 294 (433)
T PLN02374 270 LRAT---S-----------------------------------DPEIWKK----------------GPAFGMPGV-HVDG 294 (433)
T ss_pred eecc---C-----------------------------------CCCHHHH----------------HHhcCCcEE-EECC
Confidence 1110 0 0123333 789999988 7999
Q ss_pred CCHHHHHHH----HHHhhhcCCCCcEEEEEEeccCCCcchh
Q 005820 335 HNVDDLVAI----LEEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 335 hd~~~l~~a----l~~a~~~~~~~P~lI~v~T~kg~G~~~a 371 (676)
+|+.+++++ ++++++ .++|++|++.|++.+|++..
T Consensus 295 ~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR~~GHs~~ 333 (433)
T PLN02374 295 MDVLKVREVAKEAIERARR--GEGPTLVECETYRFRGHSLA 333 (433)
T ss_pred CCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEecCCcCCC
Confidence 999987754 455554 57999999999999999864
No 50
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.89 E-value=1e-22 Score=215.49 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=149.0
Q ss_pred hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhc-CCCCCCCC-CC--CCC-Ccc
Q 005820 111 KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQT-DGLSGFTK-RS--ESE-YDC 183 (676)
Q Consensus 111 ~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~-~gl~g~~~-~~--es~-~~~ 183 (676)
+..|..+++.|...+.+++...+ .|.|+++. .|+++++.+..|. .+.|..+... .+..|-.. .. ... +..
T Consensus 21 ~~~g~~~~~~GqEa~~v~~~~~l-~~~D~v~~--~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~~~~~~ 97 (300)
T PF00676_consen 21 GRFGFYHLSAGQEAIQVAAAAAL-RPGDWVFP--YYRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDKGLNIL 97 (300)
T ss_dssp TSSSCTT-TTTCHHHHHHHHHHS-CTTSEEEE--CSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBTTTTBE
T ss_pred CCeEEecchHHHHHHHHHHHHhc-cCCCEEEe--cccchhhhhhccccccchhHHhcCcccCCCCCccccccccccceee
Confidence 45689999999999888887777 56799887 6999999999996 3445554211 11222111 11 111 122
Q ss_pred cCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 184 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 184 ~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
.+++++|.++|+|+|+|+|.|+++.+..++|++|||+.++|.+||+||+|+.|++|+||||+||++ +++|.......
T Consensus 98 ~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~-aist~~~~~~~-- 174 (300)
T PF00676_consen 98 GASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQY-AISTPTEEQTA-- 174 (300)
T ss_dssp EEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESE-ETTEEHHHHCS--
T ss_pred eccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCc-ccccCcccccc--
Confidence 368999999999999999999999999999999999999999999999999999999999999994 55443211000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+.+...+++++|+..+ .|||+|+.++.++
T Consensus 175 --------------------------------------------------~~~~~~~a~~~gip~~-~VDG~D~~av~~a 203 (300)
T PF00676_consen 175 --------------------------------------------------SPDIADRAKGYGIPGI-RVDGNDVEAVYEA 203 (300)
T ss_dssp --------------------------------------------------SSTSGGGGGGTTSEEE-EEETTSHHHHHHH
T ss_pred --------------------------------------------------ccchhhhhhccCCcEE-EECCEeHHHHHHH
Confidence 0112234789999988 8999999998888
Q ss_pred HHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 005820 344 LEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (676)
Q Consensus 344 l~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 372 (676)
+++|.+. ..++|++||+.|++-.|++.++
T Consensus 204 ~~~A~~~~R~g~gP~lie~~tyR~~gHs~~D 234 (300)
T PF00676_consen 204 AKEAVEYARAGKGPVLIEAVTYRLRGHSESD 234 (300)
T ss_dssp HHHHHHHHHTTT--EEEEEEE--SS-SSTTS
T ss_pred HHHHHHHHhcCCCCEEEEEeeccCCCCCCCC
Confidence 7765432 3689999999999999998653
No 51
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.89 E-value=4.2e-22 Score=212.36 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=153.4
Q ss_pred cCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCCC-------CCCc
Q 005820 112 TGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRSE-------SEYD 182 (676)
Q Consensus 112 ~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~e-------s~~~ 182 (676)
..|+.+++.|...+.+++-..+ .|+|+++. .|+.++|.+..|. .+.|..+ +|...|++.++. .+..
T Consensus 30 ~~~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~~~~~la~G~~~~~~~~~~--~g~~~g~~~Gr~g~~h~~~~~~~ 104 (315)
T TIGR03182 30 IGGFCHLYIGQEAVAVGLIAAL-KPDDYVIT--SYRDHGHALARGVPPKEVMAEL--TGRATGCSKGKGGSMHMFDREKN 104 (315)
T ss_pred cccccCCCCChHHHHHHHHHhC-CCCCEEEe--chhhHHHHHHcCCCHHHHHHHH--cCCCCCCCCCCCCCCCcCchhhC
Confidence 4578888999998888876666 56898887 9999999999996 3444444 333444443321 1223
Q ss_pred cc-CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCC
Q 005820 183 CF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 261 (676)
Q Consensus 183 ~~-g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~ 261 (676)
.+ +.|++|+++|.|+|+|+|.++.++++.|+|++|||++++|.+||+||+|+.+++|+++||.||+ +++.|.....
T Consensus 105 ~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~~-- 181 (315)
T TIGR03182 105 FYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVERS-- 181 (315)
T ss_pred cccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHHH--
Confidence 33 5799999999999999999999999999999999999999999999999999999999999997 4543321100
Q ss_pred CCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHH
Q 005820 262 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 341 (676)
Q Consensus 262 ~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~ 341 (676)
.-.++...++++||+.++ .|||+|+.++.
T Consensus 182 --------------------------------------------------~~~~~~a~~A~a~G~~~~-~Vdg~d~~av~ 210 (315)
T TIGR03182 182 --------------------------------------------------SSVTDLYKRGESFGIPGE-RVDGMDVLAVR 210 (315)
T ss_pred --------------------------------------------------hCCcCHHHHHHhCCCCEE-EECCCCHHHHH
Confidence 001122344889999987 79999999887
Q ss_pred HHHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 005820 342 AILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 342 ~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 371 (676)
++++++.+. ..++|++|++.|++-.|+...
T Consensus 211 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 242 (315)
T TIGR03182 211 EAAKEAVERARSGKGPILLEMKTYRFRGHSMS 242 (315)
T ss_pred HHHHHHHHHHHccCCCEEEEEeCCcCCCCCCC
Confidence 777765421 357999999999999999754
No 52
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88 E-value=2.4e-21 Score=208.66 Aligned_cols=195 Identities=19% Similarity=0.248 Sum_probs=148.6
Q ss_pred CCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCCCCCCccc-CCCccc
Q 005820 114 GHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRSESEYDCF-GTGHSS 190 (676)
Q Consensus 114 GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~es~~~~~-g~G~~G 190 (676)
|..+++.|...+.+++-..+ +|+|+++. .|++++|.+..|. .+.|..+ .|.-.|... ......+ ++|++|
T Consensus 53 ~~~~~~~GqEa~~vg~~~al-~~~D~~~~--~yR~h~~~l~~G~~~~~~~ae~--~g~~~g~~~--~~~~~~~g~~~~vG 125 (341)
T TIGR03181 53 GTYAPNLGQEAAQVGSALAL-RKDDWVFP--SYRDHAAMLARGVPLVEILLYW--RGDERGSWD--PEGVNILPPNIPIG 125 (341)
T ss_pred ecccCCCChHHHHHHHHHHc-CCCCEEEc--chhhHHHHHHcCCCHHHHHHHh--cCcCcCCCC--chhcCccCCCchHh
Confidence 67789999998888887777 46899887 9999999999997 3444444 232223211 1233444 468899
Q ss_pred hhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHH
Q 005820 191 TSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSA 270 (676)
Q Consensus 191 ~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~ 270 (676)
.++|.|+|+|+|.++.++++.|+|++|||++++|.+||+||+|+.|++|+++||.||++ .+.|....
T Consensus 126 ~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~-~~~~~~~~------------ 192 (341)
T TIGR03181 126 TQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQW-AISVPRSK------------ 192 (341)
T ss_pred cchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCC-ccccchhh------------
Confidence 99999999999999999999999999999999999999999999999999999999984 33221100
Q ss_pred HhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH----H
Q 005820 271 LSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE----E 346 (676)
Q Consensus 271 l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~----~ 346 (676)
. ...++...++++||+.++ .|||+|..++.++++ +
T Consensus 193 -----------------------------~-----------~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 193 -----------------------------Q-----------TAAPTLAQKAIAYGIPGV-QVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred -----------------------------h-----------hCCcCHHHHHhhCCCCEE-EECCCCHHHHHHHHHHHHHH
Confidence 0 001223344899999988 789999976665554 4
Q ss_pred hhhcCCCCcEEEEEEeccCCCcchh
Q 005820 347 VKNTKTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T~kg~G~~~a 371 (676)
+++ .++|++|++.|++-.|++..
T Consensus 232 a~~--~~gP~lIev~t~R~~gH~~~ 254 (341)
T TIGR03181 232 ARS--GGGPTLIEAVTYRLGPHTTA 254 (341)
T ss_pred HHc--CCCCEEEEEEeecCCCCCCC
Confidence 544 57999999999999998754
No 53
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=99.83 E-value=1.8e-20 Score=191.60 Aligned_cols=200 Identities=23% Similarity=0.320 Sum_probs=154.5
Q ss_pred cCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCCC-CC----Cccc
Q 005820 112 TGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRSE-SE----YDCF 184 (676)
Q Consensus 112 ~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~e-s~----~~~~ 184 (676)
..|.-+.+-|+..+.+.+-..+ ++.|-+|. ..+||.+.+++|- ++.|.++ +|.-.|.+++.. |- ..++
T Consensus 87 IRGFCHLy~GQEAvavGme~ai-t~~D~iIt--sYR~Hg~~~~~G~S~~~v~aEL--~Gr~~Gc~kGKGGSMHmy~k~Fy 161 (394)
T KOG0225|consen 87 IRGFCHLYDGQEAVAVGMEAAI-TKSDSIIT--SYRCHGWTYLRGVSVREVLAEL--MGRQAGCSKGKGGSMHMYAKNFY 161 (394)
T ss_pred hceeeeecccHHHHHHHHHHhc-cCCCceEE--EeeeeeEEeecCccHHHHHHHH--hccccccccCCCcceeeeccccc
Confidence 5699999999999999886666 67899997 8899999999996 5777777 555555555432 11 1234
Q ss_pred -CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 185 -GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 185 -g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
|.|++|.++|++.|+|+|.++++++..++++.|||+.|+|++|||+|+|+.|++|+||||+||++ .+.|....
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~y-GMGTs~~R----- 235 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHY-GMGTSAER----- 235 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCC-ccCcchhh-----
Confidence 78999999999999999999999999999999999999999999999999999999999999995 33332110
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
..+.-+-|.|+- + ++.+ .|||.|+-++.+|
T Consensus 236 -------------------------------------asa~teyykRG~-----------y-iPGl-~VdGmdvlaVr~a 265 (394)
T KOG0225|consen 236 -------------------------------------ASASTEYYKRGD-----------Y-IPGL-KVDGMDVLAVREA 265 (394)
T ss_pred -------------------------------------hhcChHHHhccC-----------C-CCce-EECCcchhhHHHH
Confidence 000011122221 1 2334 5899999999999
Q ss_pred HHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 005820 344 LEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (676)
Q Consensus 344 l~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 372 (676)
.+.|++. ++.+|+++|+.|++-.|++-++
T Consensus 266 ~KfA~~~~~~g~GPilmE~~TYRy~GHSmSD 296 (394)
T KOG0225|consen 266 TKFAKKYALEGKGPILMEMDTYRYHGHSMSD 296 (394)
T ss_pred HHHHHHHHhcCCCCEEEEEeeeeecccccCC
Confidence 9987754 3589999999999999988653
No 54
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.83 E-value=7.2e-19 Score=189.97 Aligned_cols=223 Identities=18% Similarity=0.187 Sum_probs=169.6
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTH 511 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH 511 (676)
..+.+++...|+. .-+|.+++++|.|+|++|.|.+++|.++++..+++.+ ..++..++|++++. .|+|. + -|.|+
T Consensus 41 a~~~~~~~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~e~P~v~v~v~R~~p-~-~g~t~ 116 (352)
T PRK07119 41 SRRLPEVGGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSPGISLKQEGI-SYLAGAELPCVIVNIMRGGP-G-LGNIQ 116 (352)
T ss_pred HHHHHHhCCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcchHHHHHHHH-HHHHHccCCEEEEEeccCCC-C-CCCCc
Confidence 3444456677888 8999999999999999999999999999999999986 57899999977766 56553 2 23578
Q ss_pred CChhhHhHhhc-----CCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC---CccccCCC------CCCCCc
Q 005820 512 CGSFDVTFMAC-----LPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP------GNKGIP 574 (676)
Q Consensus 512 ~~~~d~a~~~~-----iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~---~~~~~~p~------~~~~~~ 574 (676)
....|+.+... --++.+++|+|++|++++...|++. ..-|++++.+... ...+.+|+ +.....
T Consensus 117 ~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~ 196 (352)
T PRK07119 117 PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKDWA 196 (352)
T ss_pred chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCCCc
Confidence 77878755432 2348999999999999999999984 4569999876321 00111111 000000
Q ss_pred cccCce--------------------------------------eEe-ecCCcEEEEEechhHHHHHHHHHHHHhCCCcE
Q 005820 575 LEVGKG--------------------------------------RIL-IEGERVALLGYGTAVQSCLAASALLESNGLRL 615 (676)
Q Consensus 575 ~~~gk~--------------------------------------~vl-~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v 615 (676)
. .+.. ... -++.|++||++|+++..+++|++.|+++|+++
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~v 275 (352)
T PRK07119 197 V-TGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIKV 275 (352)
T ss_pred c-CCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCeE
Confidence 0 0100 000 13679999999999999999999999999999
Q ss_pred EEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 616 TVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 616 ~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
+||++++++|||.+.|+++++++++|+|+|++ .|.+..+|...+.
T Consensus 276 ~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n-~g~l~~ei~~~~~ 320 (352)
T PRK07119 276 GLFRPITLWPFPEKALEELADKGKGFLSVEMS-MGQMVEDVRLAVN 320 (352)
T ss_pred EEEeeceecCCCHHHHHHHHhCCCEEEEEeCC-ccHHHHHHHHHhC
Confidence 99999999999999999999999999999998 4668888886653
No 55
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.81 E-value=2.3e-18 Score=187.54 Aligned_cols=219 Identities=18% Similarity=0.234 Sum_probs=164.7
Q ss_pred hCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC-cCCCCCCCCChh
Q 005820 438 RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSF 515 (676)
Q Consensus 438 ~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~-~G~dG~tH~~~~ 515 (676)
+....|+.+- +|.+++++|.|+|++|.|.+++|.++.+..+.+++ ..++..++|++++. +|+|. +|. ||++...
T Consensus 46 ~~~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~lm~E~~-~~a~~~e~P~Viv~~~R~gp~tg~--p~~~~q~ 121 (376)
T PRK08659 46 KVGGVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFSLMQENI-GYAAMTETPCVIVNVQRGGPSTGQ--PTKPAQG 121 (376)
T ss_pred hhCCEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHHHHHHHH-HHHHHcCCCEEEEEeecCCCCCCC--CCCcCcH
Confidence 3445778877 99999999999999999999999999998999987 35677799977766 77775 454 6777777
Q ss_pred hHhHhhc----CCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC---CccccCC-------------CC---
Q 005820 516 DVTFMAC----LPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELP-------------PG--- 569 (676)
Q Consensus 516 d~a~~~~----iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~---~~~~~~p-------------~~--- 569 (676)
|+...+. --++.|++|+|+||++++...|++. .+-|++++.+... ...+.+| ..
T Consensus 122 D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 201 (376)
T PRK08659 122 DMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPKVPPE 201 (376)
T ss_pred HHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCCCCcc
Confidence 7654441 1246799999999999999999873 5569998775311 0000000 00
Q ss_pred -CCCCc-----cc----cCce--------------------------------------------eEee-cCCcEEEEEe
Q 005820 570 -NKGIP-----LE----VGKG--------------------------------------------RILI-EGERVALLGY 594 (676)
Q Consensus 570 -~~~~~-----~~----~gk~--------------------------------------------~vl~-eG~dv~Iva~ 594 (676)
+..+. ++ .+.+ .... ++.|++||++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~iv~~ 281 (376)
T PRK08659 202 AYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVVVVAY 281 (376)
T ss_pred ccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEEEEEe
Confidence 00000 00 0100 0001 3679999999
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 595 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
|+++..+++|++.|+++|++++++++++++|||.+.|++++++++.|+|||++ .|.+..++...+.
T Consensus 282 Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~-~g~l~~el~~~~~ 347 (376)
T PRK08659 282 GSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN-LGQMSLEVERVVN 347 (376)
T ss_pred CccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999998 5777777776664
No 56
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.79 E-value=8.5e-19 Score=176.05 Aligned_cols=168 Identities=21% Similarity=0.303 Sum_probs=123.2
Q ss_pred cCchH---HHHHHHcCC--------h---HHhh-hhHh---cCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchh
Q 005820 144 VGHQT---YPHKILTGR--------R---DKMH-TMRQ---TDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDL 205 (676)
Q Consensus 144 ~gH~~---y~~~~l~G~--------~---~~l~-~~r~---~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~ 205 (676)
.||.+ |+.++|.|. + +.|. .||| .||+++||.. +.++....+|.+|++++.|+|+|+
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~gl~~lf~qfs~~gg~psH~~~-~tpGi~~~~G~LG~gLs~A~G~a~---- 76 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEGMRKLFKQFSFPGGIPSHAAP-ETPGSIHEGGELGYSLSHAYGAVF---- 76 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHHHHHHHHhcCCCCCCCCCCcc-cCCCeeecccchhhHHHHHHHhhh----
Confidence 58887 788888882 2 1243 4566 4668889876 678888899999999999999984
Q ss_pred cCCCCeEEEEEcCCcccccch---HHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhH
Q 005820 206 KGRKNNVVAVIGDGAMTAGQA---YEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLR 281 (676)
Q Consensus 206 ~~~~~~vv~viGDGa~~eG~~---~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~ 281 (676)
++++.+|+|++||||+++|.+ ||+.+++...+ .+|+.|+++|++ ++.+.+.....
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~-~i~~pt~~~~~-------------------- 135 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGY-KISNPTILARI-------------------- 135 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCC-cccCCcccccc--------------------
Confidence 567999999999999999996 99888888665 899999999984 33222211100
Q ss_pred HHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH---------------
Q 005820 282 ELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE--------------- 346 (676)
Q Consensus 282 ~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~--------------- 346 (676)
..+++.++ |++|||+.+ .|||||++++.+++++
T Consensus 136 ---------------~~e~l~~~----------------~~~yG~~~~-~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~ 183 (227)
T cd02011 136 ---------------SHEELEAL----------------FRGYGYEPY-FVEGDDPETMHQAMAATLDWAIEEIKAIQKR 183 (227)
T ss_pred ---------------CchhHHHH----------------HHhCCCceE-EECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11456655 999999988 6899999877666542
Q ss_pred hhhc-CCCCcE--EEEEEeccCCCcc
Q 005820 347 VKNT-KTTGPV--LIHVVTEKGRGYP 369 (676)
Q Consensus 347 a~~~-~~~~P~--lI~v~T~kg~G~~ 369 (676)
+|+. ...+|. +|.++|-||+.-+
T Consensus 184 ~~~~~~~~~~~wp~~~~~~~kg~~~p 209 (227)
T cd02011 184 AREGGDASRPRWPMIVLRTPKGWTGP 209 (227)
T ss_pred HHhCCCCCCCCCCEEEEeCCCCCCCC
Confidence 2211 123453 8889999999754
No 57
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.78 E-value=5.6e-17 Score=178.55 Aligned_cols=217 Identities=17% Similarity=0.204 Sum_probs=166.1
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCCCChhhHhH
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTF 519 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH~~~~d~a~ 519 (676)
..|+.+ =+|.++++++.|+|++|.|.+++|.++.+..+.|.+. .++..++|++++. .|+|.. .-+++....|+..
T Consensus 57 ~~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~-~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~ 132 (407)
T PRK09622 57 GEFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGLALMVEVLY-QASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYL 132 (407)
T ss_pred cEEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchHHHHhhHHH-HHHHhhCCEEEEEeccccCC--CcCCCchHHHHHH
Confidence 345554 4999999999999999999999999999999999874 6799999977776 454432 2688888888766
Q ss_pred hhcCCCCEEEecCCHHHHHHHHHHHHHh---C--CCCeEEEecCCC----CccccCCCC---------CCCC--------
Q 005820 520 MACLPNMVVMAPSDEAELFHMVATAAAI---D--DRPSCFRYPRGN----GIGVELPPG---------NKGI-------- 573 (676)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~~~~al~~---~--~~P~~ir~~r~~----~~~~~~p~~---------~~~~-------- 573 (676)
.+ -.++.+++|+|+||+.++...|++. . .-|++++++... ...+.+|+. ++.+
T Consensus 133 ~r-~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (407)
T PRK09622 133 SR-DSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKNSMLDFDK 211 (407)
T ss_pred Hh-cCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccccccCCCC
Confidence 55 4789999999999999999999884 2 579998775331 001111000 0000
Q ss_pred ccccC--------------------------------------ceeE-e----ecCCcEEEEEechhHHHHHHHHHHHHh
Q 005820 574 PLEVG--------------------------------------KGRI-L----IEGERVALLGYGTAVQSCLAASALLES 610 (676)
Q Consensus 574 ~~~~g--------------------------------------k~~v-l----~eG~dv~Iva~Gs~v~~aleAa~~L~~ 610 (676)
+...+ +.+. . .++.|++||++|+++..+++|++.|++
T Consensus 212 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~ea~~~L~~ 291 (407)
T PRK09622 212 PVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIVAAKEMRK 291 (407)
T ss_pred CccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHHHHHHHHh
Confidence 00000 0000 0 035789999999999999999999999
Q ss_pred CCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHH
Q 005820 611 NGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQ 662 (676)
Q Consensus 611 ~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~ 662 (676)
+|+++++|++++++|||.+.+.+++++++.|+|+|++. .||+|..+.+.+.-
T Consensus 292 ~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~a 344 (407)
T PRK09622 292 EGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSA 344 (407)
T ss_pred CCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999997 68888866665443
No 58
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.77 E-value=3.5e-17 Score=177.86 Aligned_cols=218 Identities=16% Similarity=0.197 Sum_probs=165.5
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC-cCCCCCCCCChhh
Q 005820 439 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFD 516 (676)
Q Consensus 439 ~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~-~G~dG~tH~~~~d 516 (676)
....|+.+ =+|.+++++|.|+|++|.|.+++|.++.+..+.+++ ..++..++|++++. .|+|. +|. ||.....|
T Consensus 46 ~g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~lm~E~~-~~a~~~e~P~V~~~~~R~GpstG~--p~~~~q~D 121 (375)
T PRK09627 46 CGGTFIQM-EDEISGISVALGASMSGVKSMTASSGPGISLKAEQI-GLGFIAEIPLVIVNVMRGGPSTGL--PTRVAQGD 121 (375)
T ss_pred cCCEEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHHHHhhHH-HHHHhccCCEEEEEeccCCCcCCC--CCccchHH
Confidence 33444544 499999999999999999999999999888888887 46688999988865 67776 454 77777778
Q ss_pred HhHhh-----cCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC---CccccCCC-----------------
Q 005820 517 VTFMA-----CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP----------------- 568 (676)
Q Consensus 517 ~a~~~-----~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~---~~~~~~p~----------------- 568 (676)
+...+ ..| +.|++|+|++|++++...|++. ..-|++++.+... ...+.+|+
T Consensus 122 ~~~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~~~~~ 200 (375)
T PRK09627 122 VNQAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKEFDGD 200 (375)
T ss_pred HHHHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccccccCC
Confidence 76665 344 4599999999999999999873 5569998775311 00000000
Q ss_pred --CCCCCcc------ccC---c-ee-------------------------------------------Eee-cCCcEEEE
Q 005820 569 --GNKGIPL------EVG---K-GR-------------------------------------------ILI-EGERVALL 592 (676)
Q Consensus 569 --~~~~~~~------~~g---k-~~-------------------------------------------vl~-eG~dv~Iv 592 (676)
.+..+.. .++ . .. ... ++.|++||
T Consensus 201 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd~~IV 280 (375)
T PRK09627 201 KKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAEILII 280 (375)
T ss_pred cccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCCEEEE
Confidence 0001111 000 0 00 000 34689999
Q ss_pred EechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 593 GYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 593 a~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
+||+....+++|++.|+++|++++++.+++++|||.+.+++++++.+.|+|||++. |.+..+|...+..
T Consensus 281 ~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~-Gql~~~v~~~~~~ 349 (375)
T PRK09627 281 AYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM-GQYLEEIERVMQR 349 (375)
T ss_pred EeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh-HHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999998 8899999887743
No 59
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.76 E-value=4.3e-18 Score=175.12 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=140.7
Q ss_pred CCCCCCCccHHHHHHHHHhhccCC----CCccccCcCchHHHHHHH--cCC--hHHhhhhHhcCCC----------C---
Q 005820 113 GGHLGSSLGVIELTVALHYVFNAP----KDRILWDVGHQTYPHKIL--TGR--RDKMHTMRQTDGL----------S--- 171 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~p----~D~~i~s~gH~~y~~~~l--~G~--~~~l~~~r~~~gl----------~--- 171 (676)
.++.+ .-|+.-+.++|-..++.. -+.+|+...|+...+.+. .|. .+.|.+|...... .
T Consensus 12 ~krfs-~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHl 90 (265)
T cd02016 12 QKRFG-LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHL 90 (265)
T ss_pred CeEEE-ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCC
Confidence 35554 777777778887777543 234677777888655554 564 3445555321111 0
Q ss_pred CCCCCCCCC-------CcccCCCccchhhHHHHHHHHHchhcC-----CCCeEEEEEcCCcc-cccchHHHHHHhhhcCC
Q 005820 172 GFTKRSESE-------YDCFGTGHSSTSISAGLGMAVGRDLKG-----RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDS 238 (676)
Q Consensus 172 g~~~~~es~-------~~~~g~G~~G~~ls~A~G~AlA~~~~~-----~~~~vv~viGDGa~-~eG~~~EAln~A~~~~~ 238 (676)
|++...+.. ......+|+|..+|.|+|+|+|.++++ ++..++|++|||++ ++|.+||+||+|+.|+.
T Consensus 91 g~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~l 170 (265)
T cd02016 91 GYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGY 170 (265)
T ss_pred ccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCC
Confidence 111100010 011235789999999999999999998 47889999999996 69999999999999998
Q ss_pred C---EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCC
Q 005820 239 D---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISG 315 (676)
Q Consensus 239 ~---li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~ 315 (676)
| +|+||+||++ ++.|...+.... ..+.++
T Consensus 171 p~gg~ifvveNNq~-g~sT~~~~~~~~------------------------------------~~~~~~----------- 202 (265)
T cd02016 171 TTGGTIHIVVNNQI-GFTTDPRDSRSS------------------------------------PYCTDV----------- 202 (265)
T ss_pred CCCCEEEEEEeCCE-EEEecHHHhccc------------------------------------ccHHHH-----------
Confidence 8 9999999994 554432111100 122222
Q ss_pred CccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 005820 316 SGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 316 ~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 371 (676)
++++|+..+ .|||+|++++.++.++|.+. +.++|++|++.|++-+|+...
T Consensus 203 -----a~~~gip~~-~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~ 254 (265)
T cd02016 203 -----AKMIGAPIF-HVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNEL 254 (265)
T ss_pred -----HeecCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCc
Confidence 788999987 89999999999888765432 358999999999999998743
No 60
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.76 E-value=9.7e-17 Score=185.34 Aligned_cols=214 Identities=22% Similarity=0.257 Sum_probs=161.3
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhh--cCCCCEEEEe-ecCCCcCCCCCCCCChhhH
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD--LQKLPVRFAM-DRAGLVGADGPTHCGSFDV 517 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a--~~~lpV~iv~-~~~G~~G~dG~tH~~~~d~ 517 (676)
+-++....+|.+++.+|.|+|++|.|.+++|.++.+.++.|++.. ++ ..+.|++++. ++.| .++|+....|.
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~Gl~~~~e~l~~-~~~~g~~~~iV~~~~~~~g----p~~~~~~q~d~ 120 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHVGLNVAADPLMT-LAYTGVKGGLVVVVADDPS----MHSSQNEQDTR 120 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCCchhhhHHHhhh-hhhhcCcCceEEEEccCCC----CccchhhHhHH
Confidence 567788889999999999999999999999999999999999876 45 3467766665 4433 24788888887
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC---CccccCCC---C--CCCCccccC--------
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP---G--NKGIPLEVG-------- 578 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~---~~~~~~p~---~--~~~~~~~~g-------- 578 (676)
.+.+. -++.|+.|+|++|++++...|++. ..-|++++.+... ...+.+++ . ..++..+..
T Consensus 121 ~~~~~-~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (595)
T TIGR03336 121 HYAKF-AKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAI 199 (595)
T ss_pred HHHHh-cCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchh
Confidence 66554 588899999999999999999983 5669999886321 00111111 0 000000000
Q ss_pred --------------------c--e-eEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh
Q 005820 579 --------------------K--G-RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA 635 (676)
Q Consensus 579 --------------------k--~-~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~ 635 (676)
. . .+..++.|++||++|+++..+++|++.| |++++|++++++||||++.|++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~i~~~~ 276 (595)
T TIGR03336 200 ARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGLVEEFL 276 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHHHHHHH
Confidence 0 0 1112357999999999999999988765 999999999999999999999999
Q ss_pred ccCCEEEEEcCCCCCCHHHHHHHHHHHcC
Q 005820 636 KSHEVLITVEEGSIGGFGSHVVQFLAQDG 664 (676)
Q Consensus 636 ~~~~~vIvvEe~~~gG~gs~v~~~l~~~~ 664 (676)
++++.||||||+. +++++.+...+.+.+
T Consensus 277 ~~~~~vivvEe~~-~~~~~~~~~~~~~~~ 304 (595)
T TIGR03336 277 SGVEEVLVVEELE-PVVEEQVKALAGTAG 304 (595)
T ss_pred hcCCeEEEEeCCc-cHHHHHHHHHHHhcC
Confidence 9999999999998 566666666665544
No 61
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.76 E-value=4.3e-17 Score=186.47 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=168.7
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC-cCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~-~G~dG~tH~~~~d~a 518 (676)
+-.+-..-+|.+++++|.|+|++|.|.+++|.++.+..+.|.+ ..++..++|++++. +|+|. +| -||+....|+.
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~lm~E~l-~~a~~~~~P~Vi~~~~R~gpstg--~~t~~eq~D~~ 313 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFALMTEAL-GLAGMTETPLVIVDVQRGGPSTG--LPTKTEQSDLL 313 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChhHhHHHH-hHHHhccCCEEEEEcccCCCCCC--CCCCccHHHHH
Confidence 4566667899999999999999999999999999998999988 67788999977776 77776 44 37888888876
Q ss_pred HhhcCC----CCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC---CccccCCC-----------------CCC
Q 005820 519 FMACLP----NMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN---GIGVELPP-----------------GNK 571 (676)
Q Consensus 519 ~~~~iP----~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~---~~~~~~p~-----------------~~~ 571 (676)
+.+.-. ++.|++|+|++|+.++...|++. ..-|++++.+... ...+.+|+ .+.
T Consensus 314 ~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 393 (562)
T TIGR03710 314 FALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEPEEEYK 393 (562)
T ss_pred HHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccCCCCCC
Confidence 555321 38899999999999999999873 5569998775221 00000000 000
Q ss_pred CCc--------cc-cCc--e-------------------------------------------eEe-ecCCcEEEEEech
Q 005820 572 GIP--------LE-VGK--G-------------------------------------------RIL-IEGERVALLGYGT 596 (676)
Q Consensus 572 ~~~--------~~-~gk--~-------------------------------------------~vl-~eG~dv~Iva~Gs 596 (676)
.+. .. .|. . ... .++.|++||++|+
T Consensus 394 ~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~iv~~Gs 473 (562)
T TIGR03710 394 RYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLVIGWGS 473 (562)
T ss_pred CCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEEEEeCC
Confidence 000 00 110 0 000 0246899999999
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 597 ~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
+...+++|++.|+++|+++.++.+++++|||.+.|++++++.+.|+|+|++..|.+..+|...+
T Consensus 474 ~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~Gql~~~v~~~~ 537 (562)
T TIGR03710 474 TYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNATGQLAKLLRAET 537 (562)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChhhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998899999998877
No 62
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.75 E-value=3.3e-16 Score=170.91 Aligned_cols=203 Identities=17% Similarity=0.196 Sum_probs=158.4
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCCCChhhHhHhhcCCC
Q 005820 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFMACLPN 525 (676)
Q Consensus 447 GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH~~~~d~a~~~~iP~ 525 (676)
.=+|.+++++|.|+|++|.|.+++|.++.+..+.|++. .++..++|++++. .|+|.. .+++|+...|+.+.+. .+
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl~lm~E~l~-~aa~~~lPiVi~~~~R~~p~--~~~~~~~q~D~~~~~d-~g 130 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFTATSAQGLALMHEMLH-WAAGARLPIVMVDVNRAMAP--PWSVWDDQTDSLAQRD-TG 130 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeCcccHHHHhhHHH-HHHhcCCCEEEEEeccCCCC--CCCCcchhhHHHHHhh-cC
Confidence 35899999999999999999999999999999999875 6789999988776 666653 4689888889766654 68
Q ss_pred CEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC----Ccccc----------CCCCCC-------CCccc-----
Q 005820 526 MVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN----GIGVE----------LPPGNK-------GIPLE----- 576 (676)
Q Consensus 526 l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~----~~~~~----------~p~~~~-------~~~~~----- 576 (676)
+.+++|+|+||+.++...|++ +..-|++++.+... ...+. +|+.+. +.+..
T Consensus 131 ~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~p~s~~~~~ 210 (390)
T PRK08366 131 WMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFDNPISVGALA 210 (390)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCCCCcccccCC
Confidence 999999999999999999987 35569998875321 00000 110000 00000
Q ss_pred ---------------------------------cCceeE--ee----cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q 005820 577 ---------------------------------VGKGRI--LI----EGERVALLGYGTAVQSCLAASALLESNGLRLTV 617 (676)
Q Consensus 577 ---------------------------------~gk~~v--l~----eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~V 617 (676)
+|+.+. .. ++.|++||++|+....+++|++.|+++|+++++
T Consensus 211 ~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~ 290 (390)
T PRK08366 211 TPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLLRKEGYKVGY 290 (390)
T ss_pred CCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCceee
Confidence 111111 01 356899999999999999999999999999999
Q ss_pred EEccccCcCcHHHHHHHhccCCEEEEEcCCCC-CCHH
Q 005820 618 ADARFCKPLDHALIRSLAKSHEVLITVEEGSI-GGFG 653 (676)
Q Consensus 618 Id~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~-gG~g 653 (676)
+.+++++|||.+.+++++++.+.|+|+|++.. |.+|
T Consensus 291 l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g 327 (390)
T PRK08366 291 AKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEG 327 (390)
T ss_pred EEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCccc
Confidence 99999999999999999999999999999975 6644
No 63
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.71 E-value=1.8e-15 Score=165.54 Aligned_cols=213 Identities=17% Similarity=0.206 Sum_probs=162.6
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCC
Q 005820 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNM 526 (676)
Q Consensus 447 GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l 526 (676)
.=+|.++++++.|+|++|.|.+++|.++.+..+.|.+. .++..++|++++....++ +...++|....|+...+. -++
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaTS~~Gl~lm~E~l~-~aag~~lP~V~vv~~R~~-~~p~~i~~d~~D~~~~rd-~g~ 132 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTATASQGLALMHEVLF-IAAGMRLPIVMAIGNRAL-SAPINIWNDWQDTISQRD-TGW 132 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeeeccchHHHHhhHHH-HHHHccCCEEEEECCCCC-CCCCCcCcchHHHHhccc-cCe
Confidence 36899999999999999999999999999999999874 679999998888744342 333467877778655554 468
Q ss_pred EEEecCCHHHHHHHHHHHHHhCC-----CCeEEEecCC----CCccccCCCC---------CCC--------Cccc----
Q 005820 527 VVMAPSDEAELFHMVATAAAIDD-----RPSCFRYPRG----NGIGVELPPG---------NKG--------IPLE---- 576 (676)
Q Consensus 527 ~V~~Psd~~E~~~~~~~al~~~~-----~P~~ir~~r~----~~~~~~~p~~---------~~~--------~~~~---- 576 (676)
.++.|+|.||+.++...|++..+ -|++++++.- ....+.+|+. ++. .+..
T Consensus 133 ~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~~p~~~g~~ 212 (394)
T PRK08367 133 MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPARPITQGAL 212 (394)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCCCCcccCCC
Confidence 89999999999999999988544 4999877642 0111111100 000 0000
Q ss_pred ----------------------------------cCcee-Eee----cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEE
Q 005820 577 ----------------------------------VGKGR-ILI----EGERVALLGYGTAVQSCLAASALLESNGLRLTV 617 (676)
Q Consensus 577 ----------------------------------~gk~~-vl~----eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~V 617 (676)
.|+.+ .+. ++.|++||++|+....+++|++.|+++|++|++
T Consensus 213 ~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR~~G~kVGl 292 (394)
T PRK08367 213 AFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLREEGYKVGA 292 (394)
T ss_pred CCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHHhcCCccee
Confidence 11111 111 357999999999999999999999999999999
Q ss_pred EEccccCcCcHHHHHHHhccCCEEEEEcCCCC----CCHHHHHHHHHHH
Q 005820 618 ADARFCKPLDHALIRSLAKSHEVLITVEEGSI----GGFGSHVVQFLAQ 662 (676)
Q Consensus 618 Id~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~----gG~gs~v~~~l~~ 662 (676)
+.+++++|||.+.+++++++.+.|+|+|.+.. |.+..+|...|..
T Consensus 293 lri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~ 341 (394)
T PRK08367 293 AKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVN 341 (394)
T ss_pred EEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhc
Confidence 99999999999999999999999999999863 5577788777753
No 64
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.70 E-value=8.8e-15 Score=167.79 Aligned_cols=412 Identities=20% Similarity=0.195 Sum_probs=260.2
Q ss_pred ccchhhHHHHHHHHHch-hcC--C---CCeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCccCccCC
Q 005820 188 HSSTSISAGLGMAVGRD-LKG--R---KNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATL 257 (676)
Q Consensus 188 ~~G~~ls~A~G~AlA~~-~~~--~---~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~---li~Iv~dN~~~s~~t~~~ 257 (676)
|+=.-=|+.-|++-|.. +.+ . ....+++-||.++ .+|+++|.||++..|+.+ .|+||.||+ +...|...
T Consensus 620 HLEavdpVleGivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT~p~ 698 (1228)
T PRK12270 620 HLEAVDPVLEGIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTTAPE 698 (1228)
T ss_pred hhhhcchHhhhhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-cccccCcc
Confidence 33333456778887764 222 1 3345788899995 679999999999999977 999999998 56555433
Q ss_pred CCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCH
Q 005820 258 DGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNV 337 (676)
Q Consensus 258 ~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~ 337 (676)
++.+.. | ..+ +++.++...+ .|||+|+
T Consensus 699 ~~Rss~----------------y-----------------~td-------------------~ak~~~~Pif-hVNGdDp 725 (1228)
T PRK12270 699 SSRSSE----------------Y-----------------ATD-------------------VAKMIQAPIF-HVNGDDP 725 (1228)
T ss_pred ccccch----------------h-----------------hHH-------------------HHhhcCCCEE-eECCCCH
Confidence 322211 0 011 2455666666 6899999
Q ss_pred HHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchh----hhhhcccC------Cccc----------------------
Q 005820 338 DDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA----EKAADKYH------GVAK---------------------- 383 (676)
Q Consensus 338 ~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a----e~~~~~~H------~~~~---------------------- 383 (676)
++++.+.+.|.++ ..++|++|++.|++-+|+-.. -..|.-|. ++.+
T Consensus 726 eAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e~~l~ 805 (1228)
T PRK12270 726 EAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAEQALR 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 9999988876543 358999999999999998311 11111111 0000
Q ss_pred ---------ccC--cccccc-----------------ccc-----------------------h---------------h
Q 005820 384 ---------FDP--ATGKQF-----------------KSS-----------------------A---------------R 397 (676)
Q Consensus 384 ---------fd~--~~g~~~-----------------~~~-----------------------~---------------~ 397 (676)
|.. +..+.. .+. + .
T Consensus 806 dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpkl~~~l~~R~~m~~~g 885 (1228)
T PRK12270 806 DYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPKLKPLLEKRREMAREG 885 (1228)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChhhHHHHHHHHHHHhcC
Confidence 000 000000 000 0 0
Q ss_pred hhhHHHHHHH--HHHHHHHcCCCEEEEeccccCccc------------------hhhhhhhCCCce--eeccccHHHHHH
Q 005820 398 TQSYTTYFAE--ALIAEAEVDKDVVAIHAAMGGGTG------------------LNLFLRRFPTRC--FDVGIAEQHAVT 455 (676)
Q Consensus 398 ~~~~~~a~~~--aL~~~~~~d~~iv~i~aD~~gs~~------------------l~~f~~~~p~R~--id~GIaE~~~v~ 455 (676)
...| +|++ ++-.++.+...|...+.|...+|= |..|... ..+| .|..++|.+++|
T Consensus 886 ~iDW--a~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~-q~~f~vydS~LSEyAa~G 962 (1228)
T PRK12270 886 GIDW--AFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDD-QGKFLVYDSLLSEYAAMG 962 (1228)
T ss_pred CccH--HHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCC-cceEEEecchhhHHHhhc
Confidence 0111 2222 233455556667777777654431 1122111 2454 699999999999
Q ss_pred HHHHHHhcC--CeeEEee-chhHH---HHHHHHHHHhhh---cCCCCEEEEeecCCCcCCCCCCCCChhhHhHh--hcCC
Q 005820 456 FAAGLACEG--LKPFCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFM--ACLP 524 (676)
Q Consensus 456 ~A~GlA~~G--~~p~~~t-~~~Fl---~ra~dqi~~~~a---~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~--~~iP 524 (676)
+-.|++.+. ...+++- |.+|. |-.+|+.+...- .|+-.|++...| |+-| .||-|+...--.|+ .+=.
T Consensus 963 FEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPH-GyEG-QGPdHSSaRiERfLqlcAe~ 1040 (1228)
T PRK12270 963 FEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPH-GYEG-QGPDHSSARIERFLQLCAEG 1040 (1228)
T ss_pred cceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccC-CcCC-CCCCcchHHHHHHHHhhccC
Confidence 999999996 4555555 88886 777888764421 256778888887 4444 48999984333333 3447
Q ss_pred CCEEEecCCHHHHHHHHHH-HHHhCCCCeEEEecCCCCcc-ccCCCCCCCCccccCcee-Eeec-----C--CcEEEEEe
Q 005820 525 NMVVMAPSDEAELFHMVAT-AAAIDDRPSCFRYPRGNGIG-VELPPGNKGIPLEVGKGR-ILIE-----G--ERVALLGY 594 (676)
Q Consensus 525 ~l~V~~Psd~~E~~~~~~~-al~~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~~gk~~-vl~e-----G--~dv~Iva~ 594 (676)
||+|..|++|...+++++. ++....+|.+++.||..+.. ... ..-..|.-|+.+ |+.+ + -+=+|+|+
T Consensus 1041 nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~---S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLcS 1117 (1228)
T PRK12270 1041 NMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAV---SDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLCS 1117 (1228)
T ss_pred CeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhc---CCHHHhccCCceecCCCCCCCCccceeEEEEEc
Confidence 9999999999999999984 55567789999999875321 000 011223344443 2322 1 24578999
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC----CEEEEEcCCCCCCHHHHHHHHHHHc
Q 005820 595 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFLAQD 663 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~----~~vIvvEe~~~gG~gs~v~~~l~~~ 663 (676)
|-.....++..+. ...-++.||.+-.|.|||.+.|++.+.+. +.+.+-||....|-...++..|.+.
T Consensus 1118 GKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw~f~~~~l~~~ 1188 (1228)
T PRK12270 1118 GKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAWPFMALNLPEL 1188 (1228)
T ss_pred chhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCchhhhhhhHhh
Confidence 9999887665332 23457999999999999999988876543 6788889987555445665555544
No 65
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.66 E-value=1.1e-17 Score=154.68 Aligned_cols=89 Identities=35% Similarity=0.624 Sum_probs=85.1
Q ss_pred CceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHH
Q 005820 578 GKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHV 656 (676)
Q Consensus 578 gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v 656 (676)
||+.++++|+|++||++|++++.|++|++.|+++|++++|||++|++|||++.+.++++++++++|+||+. .||+|++|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999997 79999999
Q ss_pred HHHHHHcCCC
Q 005820 657 VQFLAQDGLL 666 (676)
Q Consensus 657 ~~~l~~~~~l 666 (676)
++++.++++-
T Consensus 81 ~~~l~~~~~~ 90 (124)
T PF02780_consen 81 AEYLAENGFN 90 (124)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHhCCc
Confidence 9999998864
No 66
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.63 E-value=3.6e-15 Score=144.22 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=107.3
Q ss_pred CCCCccccCcCchHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEE
Q 005820 135 APKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVA 214 (676)
Q Consensus 135 ~p~D~~i~s~gH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~ 214 (676)
.++|.++.|.|+.......+... .++ .+.....+.|++|+++|.|+|+|++.+ +++|||
T Consensus 11 ~~~~~i~~d~g~~~~~~~~~~~~----------------~~~-~~~~~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~ 69 (168)
T cd00568 11 PEDAIVVNDAGNSAYWAYRYLPL----------------RRG-RRFLTSTGFGAMGYGLPAAIGAALAAP----DRPVVC 69 (168)
T ss_pred CCCCEEEeCCcHHHHHHHHheee----------------CCC-CcEEeCCCchhhhhhHHHHHHHHHhCC----CCcEEE
Confidence 45788899999876433211110 000 112233477999999999999999975 889999
Q ss_pred EEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhccc
Q 005820 215 VIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQI 294 (676)
Q Consensus 215 viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~ 294 (676)
++|||+++. .+|++++|.++++|+++||.||+.+.. +. ..++.+..
T Consensus 70 ~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~-~~--------------~~~~~~~~----------------- 115 (168)
T cd00568 70 IAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGT-IR--------------MHQEAFYG----------------- 115 (168)
T ss_pred EEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHH-HH--------------HHHHHHcC-----------------
Confidence 999999995 779999999999999999999984221 00 00000000
Q ss_pred CCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEe
Q 005820 295 GGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 295 g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T 362 (676)
........-..+...+++++|++++ .++ +++++.++++++++ .++|++|+++|
T Consensus 116 ----------~~~~~~~~~~~d~~~~a~~~G~~~~-~v~--~~~~l~~a~~~a~~--~~~p~~i~v~~ 168 (168)
T cd00568 116 ----------GRVSGTDLSNPDFAALAEAYGAKGV-RVE--DPEDLEAALAEALA--AGGPALIEVKT 168 (168)
T ss_pred ----------CCcccccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 0000011112345567999999988 444 59999999999885 58999999986
No 67
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=99.58 E-value=4.1e-15 Score=151.13 Aligned_cols=130 Identities=25% Similarity=0.318 Sum_probs=105.7
Q ss_pred CCccchhhHHHHHHHHHchhcCCC-CeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCC-CccCccCCCCCCCC
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTATLDGPIPP 263 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~-~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~-~s~~t~~~~g~~~~ 263 (676)
+..+.++||.|+|.|.|.|+..++ ..+||++|||+..||.+|-++|+|+.+..|+||||-||++ +|+||.++....
T Consensus 192 ssplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~D-- 269 (432)
T KOG1182|consen 192 SSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGD-- 269 (432)
T ss_pred cchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCC--
Confidence 467789999999999999987766 7789999999999999999999999999999999999995 565555443211
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.++.| -.++|+..| .|||+|.-+++.|
T Consensus 270 ------------------------------------GIa~k----------------G~aYGi~sI-RVDGnD~lAvYnA 296 (432)
T KOG1182|consen 270 ------------------------------------GIAVK----------------GPAYGIRSI-RVDGNDALAVYNA 296 (432)
T ss_pred ------------------------------------ceEEe----------------ccccceEEE-EecCcchHHHHHH
Confidence 01111 357899988 7999999999999
Q ss_pred HHHhhhc--CCCCcEEEEEEeccCCCcch
Q 005820 344 LEEVKNT--KTTGPVLIHVVTEKGRGYPY 370 (676)
Q Consensus 344 l~~a~~~--~~~~P~lI~v~T~kg~G~~~ 370 (676)
.+.|+++ ...+|++||+.|++--.++.
T Consensus 297 ~k~ARe~av~e~rPvliEamtYRvGHHST 325 (432)
T KOG1182|consen 297 VKEAREMAVTEQRPVLIEAMTYRVGHHST 325 (432)
T ss_pred HHHHHHHHHhccCchhhhhhhhhhccccC
Confidence 9988865 45799999999998544444
No 68
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.49 E-value=9.6e-14 Score=135.57 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=89.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +..++|++|+++++|+++||.||+.+.+....+
T Consensus 46 ~~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~--~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~------- 112 (172)
T cd02004 46 TFGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFG--FSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQ------- 112 (172)
T ss_pred CCCcccchHHHHHHHHHhCC----CCeEEEEEcchhhc--CCHHHHHHHHHcCCCEEEEEEECcccccchhhh-------
Confidence 45889999999999999864 89999999999999 566889999999999888887776322211100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+.. |. .........-.+++..++++||+.+. .++ +.++|.++|
T Consensus 113 --------~~~----~~----------------------~~~~~~~~~~~~d~~~la~a~G~~~~-~v~--~~~el~~al 155 (172)
T cd02004 113 --------QLS----YG----------------------LGLPVTTLLPDTRYDLVAEAFGGKGE-LVT--TPEELKPAL 155 (172)
T ss_pred --------hhh----cc----------------------CCCceeccCCCCCHHHHHHHCCCeEE-EEC--CHHHHHHHH
Confidence 000 00 00000001112455677999999987 444 699999999
Q ss_pred HHhhhcCCCCcEEEEEEe
Q 005820 345 EEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T 362 (676)
+++.+ .++|++||+.+
T Consensus 156 ~~a~~--~~~p~liev~i 171 (172)
T cd02004 156 KRALA--SGKPALINVII 171 (172)
T ss_pred HHHHH--cCCCEEEEEEc
Confidence 99886 47999999986
No 69
>PRK06163 hypothetical protein; Provisional
Probab=99.48 E-value=6.2e-13 Score=133.06 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=91.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhc-CCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~-~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
+.|.+|+++|+|+|+++|.. +++|||++|||+++ |...+|.+|+.+ ++|+++||.||+.+.+. .+ .+
T Consensus 55 ~~GsMG~glpaAiGaalA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~----~~--~~ 122 (202)
T PRK06163 55 MLGSMGLAFPIALGVALAQP----KRRVIALEGDGSLL--MQLGALGTIAALAPKNLTIIVMDNGVYQIT----GG--QP 122 (202)
T ss_pred eecccccHHHHHHHHHHhCC----CCeEEEEEcchHHH--HHHHHHHHHHHhcCCCeEEEEEcCCchhhc----CC--cc
Confidence 46889999999999999964 88999999999998 566789999866 68999999999742210 00 00
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCce-eeccCCCCCHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-YIGPVDGHNVDDLVA 342 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~-~~~~vdGhd~~~l~~ 342 (676)
.. ..-.+++..++++||++ ...+ .+.++|.+
T Consensus 123 ~~---------------------------------------------~~~~~Df~~lA~a~G~~~~~~v---~~~~el~~ 154 (202)
T PRK06163 123 TL---------------------------------------------TSQTVDVVAIARGAGLENSHWA---ADEAHFEA 154 (202)
T ss_pred CC---------------------------------------------CCCCCCHHHHHHHCCCceEEEe---CCHHHHHH
Confidence 00 00123556679999997 4433 58999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCCCcc
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGRGYP 369 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~G~~ 369 (676)
+|+++.+ .++|++|++.+......+
T Consensus 155 al~~a~~--~~~p~lIeV~i~~~~~~~ 179 (202)
T PRK06163 155 LVDQALS--GPGPSFIAVRIDDKPGVG 179 (202)
T ss_pred HHHHHHh--CCCCEEEEEEecCCCCCC
Confidence 9999976 589999999998665433
No 70
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.48 E-value=2.3e-13 Score=135.87 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=93.9
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 51 ~~g~mG~~lpaaiGa~la~p----~r~vv~i~GDG~f~--m~~~eL~Ta~~~~lpvi~vV~NN~~yg------------- 111 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAAP----DRPVVAIAGDGAWG--MSMMEIMTAVRHKLPVTAVVFRNRQWG------------- 111 (196)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECchhH-------------
Confidence 56889999999999999854 88999999999999 456779999999999999998887321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.++..-... .+. +....++-.+++..++++||+++..+ ++.++|.++|
T Consensus 112 -----------------~~~~~q~~~---~~~---------~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 159 (196)
T cd02013 112 -----------------AEKKNQVDF---YNN---------RFVGTELESESFAKIAEACGAKGITV---DKPEDVGPAL 159 (196)
T ss_pred -----------------HHHHHHHHH---cCC---------CcccccCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHH
Confidence 111000000 000 00001111356778899999998844 5799999999
Q ss_pred HHhhhc-CCCCcEEEEEEeccCCC
Q 005820 345 EEVKNT-KTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 345 ~~a~~~-~~~~P~lI~v~T~kg~G 367 (676)
+++.+. ..++|++|++.+.+..+
T Consensus 160 ~~a~~~~~~~~p~liev~v~~~~~ 183 (196)
T cd02013 160 QKAIAMMAEGKTTVIEIVCDQELG 183 (196)
T ss_pred HHHHhcCCCCCeEEEEEEeCcccC
Confidence 988641 13789999999986664
No 71
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.48 E-value=2.6e-13 Score=134.52 Aligned_cols=122 Identities=25% Similarity=0.360 Sum_probs=92.7
Q ss_pred cCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCC
Q 005820 184 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIP 262 (676)
Q Consensus 184 ~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~ 262 (676)
+..|++|+++|+|+|+++|.+ +++|||++|||+++ +..++|.+|+++++ |+++||.||+.+.+.. + ..
T Consensus 45 ~~~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~--m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~----~-~~ 113 (188)
T cd03371 45 LTVGSMGHASQIALGIALARP----DRKVVCIDGDGAAL--MHMGGLATIGGLAPANLIHIVLNNGAHDSVG----G-QP 113 (188)
T ss_pred eecCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHH--hhccHHHHHHHcCCCCcEEEEEeCchhhccC----C-cC
Confidence 345999999999999999964 78999999999998 56678999998874 7888888887432200 0 00
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 263 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.. ...+++..++++||+.+...+ ++.++|.+
T Consensus 114 ~~-----------------------------------------------~~~~d~~~~A~a~G~~~~~~v--~~~~el~~ 144 (188)
T cd03371 114 TV-----------------------------------------------SFDVSLPAIAKACGYRAVYEV--PSLEELVA 144 (188)
T ss_pred CC-----------------------------------------------CCCCCHHHHHHHcCCceEEec--CCHHHHHH
Confidence 00 001344556899999874345 48999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
+++++.+ .++|++|++.|.++++
T Consensus 145 al~~a~~--~~~p~lIev~~~~~~~ 167 (188)
T cd03371 145 ALAKALA--ADGPAFIEVKVRPGSR 167 (188)
T ss_pred HHHHHHh--CCCCEEEEEEecCCCC
Confidence 9999876 4799999999998876
No 72
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.46 E-value=3.9e-13 Score=132.11 Aligned_cols=127 Identities=21% Similarity=0.264 Sum_probs=93.4
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccch-HHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~-~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +. ++++.+|.++++|+++||.||+.+..... +.....
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~--~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~-~~~~~~- 120 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFF--HSGILGLINAVYNKANITVVILDNRTTAMTGG-QPHPGT- 120 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHh--hccHHHHHHHHHcCCCEEEEEECCcceeccCC-CCCCCC-
Confidence 46899999999999999975 88999999999997 33 68899999999999998888874321100 000000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
. + . .....-.+++..++++|||+++.+.+++|++++.++
T Consensus 121 --~-------------~-------------------~-------~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~a 159 (178)
T cd02008 121 --G-------------K-------------------T-------LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREE 159 (178)
T ss_pred --c-------------c-------------------c-------ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHH
Confidence 0 0 0 000001134556799999999977799999999999
Q ss_pred HHHhhhcCCCCcEEEEEEe
Q 005820 344 LEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T 362 (676)
|+++.+ .++|++|+++.
T Consensus 160 l~~a~~--~~gp~lI~v~~ 176 (178)
T cd02008 160 LKEALA--VPGVSVIIAKR 176 (178)
T ss_pred HHHHHh--CCCCEEEEEeC
Confidence 999876 57999999975
No 73
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.46 E-value=3.1e-13 Score=133.73 Aligned_cols=128 Identities=21% Similarity=0.362 Sum_probs=93.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 48 ~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpi~ivV~nN~~~~------------- 108 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVARP----DKTVICIDGDGSFQ--MNIQELATAAQYNLPVKIVILNNGSLG------------- 108 (186)
T ss_pred CccchhchHHHHHHHHHhCC----CCeEEEEEcccHHh--ccHHHHHHHHHhCCCeEEEEEECCccH-------------
Confidence 45889999999999999864 88999999999999 566779999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.++..-+... + +.+. .+. -.+++..++++||+++. .+ ++.++|.+
T Consensus 109 -----------------~~~~~~~~~~---~----------~~~~~~~~~~~~d~~~~a~a~G~~~~-~v--~~~~el~~ 155 (186)
T cd02015 109 -----------------MVRQWQELFY---E----------GRYSHTTLDSNPDFVKLAEAYGIKGL-RV--EKPEELEA 155 (186)
T ss_pred -----------------HHHHHHHHHc---C----------CceeeccCCCCCCHHHHHHHCCCceE-Ee--CCHHHHHH
Confidence 1111000000 0 0000 011 12456778999999987 44 46899999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++++.+ .++|++|++.|.+..
T Consensus 156 al~~a~~--~~~p~liev~~~~~~ 177 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEE 177 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCc
Confidence 9999886 589999999997543
No 74
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.43 E-value=7.3e-13 Score=133.16 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=94.4
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++.+ ..+|.+|.++++|+++||.||+.+.+
T Consensus 46 ~~gsmG~~lpaAiGa~la~p----~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~------------ 107 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAKP----DREVYVLVGDGSYLML--HSEIVTAVQEGLKIIIVLFDNHGFGC------------ 107 (205)
T ss_pred CcchhhhHHHHHHHHHHhCC----CCeEEEEEccchhhcc--HHHHHHHHHcCCCCEEEEEECCccHH------------
Confidence 56899999999999999864 8899999999999964 45799999999999888888874211
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHH-HHHh-hccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVD-EYAR-GMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~-~~~~-~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
+ +.+++....+.| +...... ... .... ..-.+++..++++||+++..+ ++.++|.+
T Consensus 108 --~-~~~q~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~ 165 (205)
T cd02003 108 --I-NNLQESTGSGSF--------------GTEFRDR--DQESGQLDGALLPVDFAANARSLGARVEKV---KTIEELKA 165 (205)
T ss_pred --H-HHHHHHhcCccc--------------cchhccc--ccccccccCCCCCCCHHHHHHhCCCEEEEE---CCHHHHHH
Confidence 0 001100000000 0000000 000 0000 011356778899999998754 68999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
+|+++.+ .++|++|++.|.+...
T Consensus 166 al~~a~~--~~gp~lIeV~v~~~~~ 188 (205)
T cd02003 166 ALAKAKA--SDRTTVIVIKTDPKSM 188 (205)
T ss_pred HHHHHHh--CCCCEEEEEEeecccc
Confidence 9999886 5899999999987553
No 75
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.42 E-value=1.1e-12 Score=131.45 Aligned_cols=141 Identities=19% Similarity=0.242 Sum_probs=94.9
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 55 ~~GsmG~~lpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~lpviivV~NN~~y-------------- 114 (202)
T cd02006 55 QAGPLGWTVPAALGVAAADP----DRQVVALSGDYDFQ--FMIEELAVGAQHRIPYIHVLVNNAYL-------------- 114 (202)
T ss_pred CccchhhhhHHHHhHHhhCC----CCeEEEEEeChHhh--ccHHHHHHHHHhCCCeEEEEEeCchH--------------
Confidence 56899999999999999864 88999999999999 66678999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+.+|..-+.......... ... ....-....-.+++..++++||+++..+ .+.++|.++|
T Consensus 115 ----------------g~~~~~q~~~~~~~~~~~-~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 173 (202)
T cd02006 115 ----------------GLIRQAQRAFDMDYQVNL-AFE-NINSSELGGYGVDHVKVAEGLGCKAIRV---TKPEELAAAF 173 (202)
T ss_pred ----------------HHHHHHHHHhcCcccccc-ccc-cccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHH
Confidence 111111000000000000 000 0000000001257788899999998754 6789999999
Q ss_pred HHhhhc--CCCCcEEEEEEeccCC
Q 005820 345 EEVKNT--KTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~--~~~~P~lI~v~T~kg~ 366 (676)
+++.+. ..++|++|++.+....
T Consensus 174 ~~a~~~~~~~~~p~liev~i~~~~ 197 (202)
T cd02006 174 EQAKKLMAEHRVPVVVEAILERVT 197 (202)
T ss_pred HHHHHhcccCCCcEEEEEEecccc
Confidence 988741 1479999999987654
No 76
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.42 E-value=1.4e-12 Score=128.30 Aligned_cols=119 Identities=20% Similarity=0.298 Sum_probs=88.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
+.|++|+++|+|+|+|+|.+ ++|+|++|||+++ +...++.+|..++ .|+++||.||+.++... ....
T Consensus 40 ~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~--m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~-----~~~~ 107 (179)
T cd03372 40 MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL--MNLGALATIAAEKPKNLIIVVLDNGAYGSTG-----NQPT 107 (179)
T ss_pred cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH--hCHHHHHHHHHcCCCCEEEEEEcCccccccC-----CCCC
Confidence 36999999999999999964 7899999999998 4456788888887 57888877776333210 0000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
. . ...+++..++++||+.+. .++| +.+++.++
T Consensus 108 ~--~--------------------------------------------~~~~d~~~lA~a~G~~~~-~v~~-~~~el~~a 139 (179)
T cd03372 108 H--A--------------------------------------------GKKTDLEAVAKACGLDNV-ATVA-SEEAFEKA 139 (179)
T ss_pred C--C--------------------------------------------CCCCCHHHHHHHcCCCeE-EecC-CHHHHHHH
Confidence 0 0 001344556899999987 5665 89999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
+++++ ++|++|++.|.++.+
T Consensus 140 l~~a~----~gp~lIev~~~~~~~ 159 (179)
T cd03372 140 VEQAL----DGPSFIHVKIKPGNT 159 (179)
T ss_pred HHHhc----CCCEEEEEEEcCCCC
Confidence 99886 589999999988776
No 77
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.41 E-value=1.3e-12 Score=128.18 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=89.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+ |.+|+++|+|+|+++|.+ +++|||++|||+++.+. +++++|..++.|+++||.||+.+.+.+
T Consensus 48 ~-g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~---------- 110 (178)
T cd02002 48 G-GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALR---------- 110 (178)
T ss_pred C-ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHH----------
Confidence 5 999999999999999874 88999999999999664 689999999999999999997422100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhh--ccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARG--MISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~--~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.++..... ....+. +....+ .-.++...++++||+++. .++ +.+++.+
T Consensus 111 -----~~~~~~~~----------~~~~~~------------~~~~~~~~~~~~d~~~~a~a~G~~~~-~v~--~~~el~~ 160 (178)
T cd02002 111 -----SFLKRVGP----------EGPGEN------------APDGLDLLDPGIDFAAIAKAFGVEAE-RVE--TPEELDE 160 (178)
T ss_pred -----HHHHHHcC----------CCcccc------------cccccccCCCCCCHHHHHHHcCCceE-EeC--CHHHHHH
Confidence 00000000 000000 000000 012345667999999987 454 4999999
Q ss_pred HHHHhhhcCCCCcEEEEEEe
Q 005820 343 ILEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T 362 (676)
+++++.+ .++|++||+++
T Consensus 161 al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 161 ALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHh--CCCCEEEEEEC
Confidence 9999886 57999999874
No 78
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.40 E-value=1.5e-12 Score=125.33 Aligned_cols=117 Identities=23% Similarity=0.313 Sum_probs=88.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhc-CCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL-DSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~-~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
..|++|+++|+|+|+++|.+ ++|||++|||+++ +...++.+++.+ +.|+++||.||+.+... ..+ ..
T Consensus 40 ~~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~--m~~~el~t~~~~~~~~i~~vV~nN~~~g~~-~~~----~~ 107 (157)
T cd02001 40 MLGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLL--MNPGVLLTAGEFTPLNLILVVLDNRAYGST-GGQ----PT 107 (157)
T ss_pred eecchhhHHHHHHHHHhcCC-----CcEEEEECchHHH--hcccHHHHHHHhcCCCEEEEEEeCcccccc-CCc----CC
Confidence 37889999999999999862 7899999999997 444668898887 59999999888632210 000 00
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
....+++..++++||+.+..+ ++.++|.++
T Consensus 108 -----------------------------------------------~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 137 (157)
T cd02001 108 -----------------------------------------------PSSNVNLEAWAAACGYLVLSA---PLLGGLGSE 137 (157)
T ss_pred -----------------------------------------------CCCCCCHHHHHHHCCCceEEc---CCHHHHHHH
Confidence 000234556689999998744 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg 365 (676)
++++.+ .++|++|++.+.++
T Consensus 138 l~~a~~--~~gp~vi~v~i~~~ 157 (157)
T cd02001 138 FAGLLA--TTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHh--CCCCEEEEEEecCC
Confidence 999886 57999999998764
No 79
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.40 E-value=1.4e-12 Score=128.04 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=92.9
Q ss_pred cCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 184 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 184 ~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
.+.|.+|+++|+|+|+++|.+ +++||||+|||+++ +....|.+|.++++|+++||.||+.+.
T Consensus 45 ~~~g~mG~~lp~aiGa~la~~----~~~vv~i~GDG~f~--m~~~eL~ta~~~~l~vi~vV~NN~~~g------------ 106 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVYP----DRKVVAVSGDGGFM--MNSQELETAVRLKIPLVVLIWNDNGYG------------ 106 (177)
T ss_pred CCChhhhhHHHHHHHHHHhCC----CCcEEEEEcchHHH--hHHHHHHHHHHHCCCeEEEEEECCcch------------
Confidence 366899999999999999864 88999999999998 666779999999999999988887321
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+ +..++.. + .+....++-.+++..+.++||+++..+ .+.+++.++
T Consensus 107 --~~-~~~~~~~----~------------------------~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 152 (177)
T cd02010 107 --LI-KWKQEKE----Y------------------------GRDSGVDFGNPDFVKYAESFGAKGYRI---ESADDLLPV 152 (177)
T ss_pred --HH-HHHHHHh----c------------------------CCcccCcCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 01 0000000 0 000001111246677899999998744 589999999
Q ss_pred HHHhhhcCCCCcEEEEEEecc
Q 005820 344 LEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~k 364 (676)
++++.+ .++|++|++.+..
T Consensus 153 l~~a~~--~~~p~liev~~~~ 171 (177)
T cd02010 153 LERALA--ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHHh--CCCCEEEEEEecc
Confidence 999986 5899999999864
No 80
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.39 E-value=1.9e-12 Score=127.27 Aligned_cols=127 Identities=20% Similarity=0.310 Sum_probs=90.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|+|++|||+++.+ ..| +.+|..+++|+++||.||+.+.+
T Consensus 49 ~~g~mG~~~~~aiGa~~a~~----~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~------------ 110 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAYP----DRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGF------------ 110 (178)
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhH------------
Confidence 55889999999999999864 7899999999999977 445 88899999999999999973221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+ +..++....+ .+..++-.+++..++++||+++.. + .+.+++.+++
T Consensus 111 --~-~~~~~~~~~~----------------------------~~~~~~~~~d~~~la~a~G~~~~~-v--~~~~el~~~l 156 (178)
T cd02014 111 --I-KWEQEVMGQP----------------------------EFGVDLPNPDFAKIAEAMGIKGIR-V--EDPDELEAAL 156 (178)
T ss_pred --H-HHHHHHhcCC----------------------------ceeccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 0 0000000000 000111123556779999999874 4 4789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+ .++|++||+.|.+.
T Consensus 157 ~~a~~--~~~p~liev~~~~~ 175 (178)
T cd02014 157 DEALA--ADGPVVIDVVTDPN 175 (178)
T ss_pred HHHHh--CCCCEEEEEEeCCC
Confidence 99886 47999999998643
No 81
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.36 E-value=5.5e-11 Score=145.74 Aligned_cols=218 Identities=14% Similarity=0.116 Sum_probs=157.6
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCCCChhhHhHh
Q 005820 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFM 520 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH~~~~d~a~~ 520 (676)
.|+.+ =+|.++++++.|++..|.+.++.|.+..+..+.+.+. .++..++|++++. .|+|. +..+..+....|+...
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~LM~e~l~-~~ag~~~P~Vi~va~R~~~-~~~~~i~~dh~Dv~~~ 129 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLLLMIPNMY-KIAGELLPCVFHVSARAIA-AHALSIFGDHQDVMAA 129 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHHHHHHHHH-HHHhccCCEEEEEecCCCC-CCCCccCCCchHHHHh
Confidence 34444 6899999999999999999999998888878888764 4566799988877 45553 2223556666676555
Q ss_pred hcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC----CccccC----------CCC-CCCC---------
Q 005820 521 ACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN----GIGVEL----------PPG-NKGI--------- 573 (676)
Q Consensus 521 ~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~----~~~~~~----------p~~-~~~~--------- 573 (676)
|. -|+.+++|++.||+.++...|++ +...|+++.++--. ...+.+ ++. ...+
T Consensus 130 R~-~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~l~~~~ 208 (1165)
T TIGR02176 130 RQ-TGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFRKRSMNPEH 208 (1165)
T ss_pred hc-CCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhcccccccccCCCC
Confidence 65 58899999999999999888875 35679998775310 011101 000 0000
Q ss_pred ccc--------------------------------------cCcee-----EeecCCcEEEEEechhHHHHHHHHHHHHh
Q 005820 574 PLE--------------------------------------VGKGR-----ILIEGERVALLGYGTAVQSCLAASALLES 610 (676)
Q Consensus 574 ~~~--------------------------------------~gk~~-----vl~eG~dv~Iva~Gs~v~~aleAa~~L~~ 610 (676)
+.. .|+.+ .-.++.+++||++|+....+.+|++.|++
T Consensus 209 p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~eav~~Lr~ 288 (1165)
T TIGR02176 209 PHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIEETVDYLNA 288 (1165)
T ss_pred CceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 000 01100 11135789999999999999999999999
Q ss_pred CCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCC-C----CHHHHHHHHHHHc
Q 005820 611 NGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSI-G----GFGSHVVQFLAQD 663 (676)
Q Consensus 611 ~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~-g----G~gs~v~~~l~~~ 663 (676)
+|++|++|.++.++|||.+.+++.+ ++.+.|+|+|.+.. | -+...|...+...
T Consensus 289 ~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~~ 347 (1165)
T TIGR02176 289 KGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYEM 347 (1165)
T ss_pred cCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhhc
Confidence 9999999999999999999998876 68899999999852 2 3777787777653
No 82
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.36 E-value=9.2e-13 Score=126.11 Aligned_cols=129 Identities=20% Similarity=0.297 Sum_probs=91.0
Q ss_pred cCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCC
Q 005820 184 FGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPP 263 (676)
Q Consensus 184 ~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~ 263 (676)
.+.|.+|+++|+|+|+++|. ++++|||++|||++... ..+|.+|.+++.|+++||.||+.+..
T Consensus 25 ~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~----------- 87 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGM----------- 87 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHH-----------
T ss_pred CCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceE-----------
Confidence 46799999999999999984 48999999999999954 56799999999999999999974211
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
. +..+.......+ . .. ..+..-..++..+++++|+++. .|+-.|.++|.++
T Consensus 88 ---~-~~~~~~~~~~~~----------~---~~-----------~~~~~~~~d~~~~a~a~G~~~~-~v~~~~~~el~~a 138 (153)
T PF02775_consen 88 ---T-GGQQTPFGGGRF----------S---GV-----------DGKTFPNPDFAALAEAFGIKGA-RVTTPDPEELEEA 138 (153)
T ss_dssp ---H-HHHHHHTTSTCH----------H---ST-----------BTTTSTTCGHHHHHHHTTSEEE-EESCHSHHHHHHH
T ss_pred ---e-ccccccCcCccc----------c---cc-----------cccccccCCHHHHHHHcCCcEE-EEccCCHHHHHHH
Confidence 0 000000000000 0 00 0001223456777999999977 5666677999999
Q ss_pred HHHhhhcCCCCcEEEEE
Q 005820 344 LEEVKNTKTTGPVLIHV 360 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v 360 (676)
|+++.+ .++|++|||
T Consensus 139 l~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 139 LREALE--SGGPAVIEV 153 (153)
T ss_dssp HHHHHH--SSSEEEEEE
T ss_pred HHHHHh--CCCcEEEEc
Confidence 999986 589999997
No 83
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.35 E-value=5.4e-12 Score=124.32 Aligned_cols=118 Identities=21% Similarity=0.355 Sum_probs=88.1
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
.|.+|+++|+|+|+++|. +++|||++|||+++.+ .+++.+|+.++ .|+++||.||+.+..- +....
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~~yg~~-----~~q~~- 107 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNGAYGST-----GNQPT- 107 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCCccccc-----cCcCC-
Confidence 688999999999999985 6789999999999955 46799999888 5999999999742210 00000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
. ..-.+++..++++||+.+...+ ++.++|.++|
T Consensus 108 ------------------------------~---------------~~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al 140 (181)
T TIGR03846 108 ------------------------------P---------------ASRRTDLELVAKAAGIRNVEKV--ADEEELRDAL 140 (181)
T ss_pred ------------------------------C---------------CCCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHH
Confidence 0 0002345567899999987522 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+ +.+ .++|++|++.+.++.
T Consensus 141 ~-a~~--~~~p~li~v~~~~~~ 159 (181)
T TIGR03846 141 K-ALA--MKGPTFIHVKVKPGN 159 (181)
T ss_pred H-HHc--CCCCEEEEEEeCCCC
Confidence 7 654 579999999987654
No 84
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.35 E-value=1e-11 Score=130.70 Aligned_cols=212 Identities=25% Similarity=0.349 Sum_probs=119.5
Q ss_pred CCCCCCCccHHHHHHHHHhhccC-CCC-ccccCcCchH---HHHHHHcCCh-----------HHhhh-hHhc---CCCCC
Q 005820 113 GGHLGSSLGVIELTVALHYVFNA-PKD-RILWDVGHQT---YPHKILTGRR-----------DKMHT-MRQT---DGLSG 172 (676)
Q Consensus 113 ~GH~~sslg~~el~~aL~~~~~~-p~D-~~i~s~gH~~---y~~~~l~G~~-----------~~l~~-~r~~---~gl~g 172 (676)
-||+|++.|..-+.+.|.++.+. ..| .+|...||.+ .+..+|.|.. +-|.. |||+ ||+.+
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~FS~PgGipS 126 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQFSFPGGIPS 126 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHBTSTTSB-S
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhCCCCCCCcc
Confidence 59999999999999999876542 234 4577899998 6777888831 22332 3454 45555
Q ss_pred CCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC----CCEEEEEECCC
Q 005820 173 FTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD----SDMIVILNDNK 248 (676)
Q Consensus 173 ~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~----~~li~Iv~dN~ 248 (676)
|..+ ++++...-.|-+|++++.|.|+++- ++|-.|+||+||||..+|..--+...-.+++ ..|+-|+.-|+
T Consensus 127 H~~p-~tPGsIhEGGELGYaLshA~GA~~D----nPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG 201 (379)
T PF09364_consen 127 HVSP-ETPGSIHEGGELGYALSHAFGAVFD----NPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNG 201 (379)
T ss_dssp SS-T-TSTT-S---SSTS-HHHHHHHHHTT-----TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-S
T ss_pred ccCc-CCCCccCcCcchhhHHHHHhhcccC----CCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecC
Confidence 5544 4555555668999999999998865 5699999999999999995433333233443 47999999998
Q ss_pred C-CccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCce
Q 005820 249 Q-VSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY 327 (676)
Q Consensus 249 ~-~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~ 327 (676)
+ ++-|| + ++ + + .-+++. .+|+.+||.
T Consensus 202 ~KI~~pT---------i--l~----r---------~-------------~~~eL~----------------~lf~G~Gy~ 228 (379)
T PF09364_consen 202 YKISNPT---------I--LA----R---------M-------------SDEELE----------------ALFRGYGYE 228 (379)
T ss_dssp BSSSSB----------H--HH----H---------S--------------HHHHH----------------HHHHHTTEE
T ss_pred ccccCCe---------E--ee----e---------c-------------CHHHHH----------------HHHHhCCCe
Confidence 5 33222 1 10 0 0 013343 349999999
Q ss_pred eeccCCCCCHHHHHHHH--------HHhhhc--------CCCCc--EEEEEEeccCCCcchhh-----hhhcccCCccc
Q 005820 328 YIGPVDGHNVDDLVAIL--------EEVKNT--------KTTGP--VLIHVVTEKGRGYPYAE-----KAADKYHGVAK 383 (676)
Q Consensus 328 ~~~~vdGhd~~~l~~al--------~~a~~~--------~~~~P--~lI~v~T~kg~G~~~ae-----~~~~~~H~~~~ 383 (676)
.+ .|+|+|.+++...+ +++++. ...+| -+|.++|.||++.+..- ...-+.|.++.
T Consensus 229 p~-~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlRtPKGWtgP~~vdG~~iEGt~raHQVPl 306 (379)
T PF09364_consen 229 PI-FVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLRTPKGWTGPKEVDGKPIEGTFRAHQVPL 306 (379)
T ss_dssp EE-EEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE--TTTTS-SEETTEE-TTSGGGSS-SS
T ss_pred EE-EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEECCcccCCccccCCccccCcceeeeccc
Confidence 87 78999987654433 222221 11234 38999999999877421 12245566664
No 85
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.34 E-value=1.7e-12 Score=127.27 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=90.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
|.|.+|+++|+|+|+++|. +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.+-.... .
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~---~--- 115 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFL--HDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLP---Q--- 115 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHH--HhHHHHHhccccCCCeEEEEEECCCCchheecc---C---
Confidence 5578999999999999984 68899999999999 556789999999999999999997432100000 0
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.+....| .. .... .-.+++..++++||+++..+ ++.++|.++|
T Consensus 116 ---------~~~~~~~---------------------~~---~~~~-~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 158 (175)
T cd02009 116 ---------ASFEDEF---------------------ER---LFGT-PQGLDFEHLAKAYGLEYRRV---SSLDELEQAL 158 (175)
T ss_pred ---------Ccccchh---------------------hh---hhcC-CCCCCHHHHHHHcCCCeeeC---CCHHHHHHHH
Confidence 0000000 00 0000 01356777899999998754 5899999999
Q ss_pred HHhhhcCCCCcEEEEEEec
Q 005820 345 EEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~ 363 (676)
+++.+ .++|++|++.+.
T Consensus 159 ~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 159 ESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99986 589999999863
No 86
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.31 E-value=1.6e-10 Score=125.29 Aligned_cols=453 Identities=18% Similarity=0.210 Sum_probs=270.4
Q ss_pred ccccCcCchHHHHHHHcCC--hHHhhhhHhcCCCCCCCCCCC----------CCCcccCC------------CccchhhH
Q 005820 139 RILWDVGHQTYPHKILTGR--RDKMHTMRQTDGLSGFTKRSE----------SEYDCFGT------------GHSSTSIS 194 (676)
Q Consensus 139 ~~i~s~gH~~y~~~~l~G~--~~~l~~~r~~~gl~g~~~~~e----------s~~~~~g~------------G~~G~~ls 194 (676)
.+|+...|+.-. -+||+. -.--+.||+..|.+-||...+ +..|.+|. .|+-.-=|
T Consensus 212 ~viigmpHRGRl-nLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNP 290 (913)
T KOG0451|consen 212 HVIIGMPHRGRL-NLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNP 290 (913)
T ss_pred eEEEeccccCcc-hHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCc
Confidence 366667787621 122331 011245899999999997643 22233343 23334456
Q ss_pred HHHHHHHHchhcC------C------CCeEEE--EEcCCccc-ccchHHHHHHhh--hcC-CCEEEEEECCCCCccCccC
Q 005820 195 AGLGMAVGRDLKG------R------KNNVVA--VIGDGAMT-AGQAYEAMNNAG--YLD-SDMIVILNDNKQVSLPTAT 256 (676)
Q Consensus 195 ~A~G~AlA~~~~~------~------~~~vv~--viGDGa~~-eG~~~EAln~A~--~~~-~~li~Iv~dN~~~s~~t~~ 256 (676)
+|+|-+-++.-.. + ..+|+| +-||+++. +|.+||.+|++- +.. .--+-++.||+ +...|..
T Consensus 291 VAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQ-vgfTtp~ 369 (913)
T KOG0451|consen 291 VAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQ-VGFTTPG 369 (913)
T ss_pred hhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEeccc-ccccCcc
Confidence 7888777664321 1 234554 56999996 599999999885 332 33344444555 4444433
Q ss_pred CCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCC
Q 005820 257 LDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 336 (676)
Q Consensus 257 ~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd 336 (676)
..|.+..+ ..+ +.+++++.++ .|+|.|
T Consensus 370 ~rGRSs~y---------------------------------csD-------------------iaK~~~~pvi-HVNGD~ 396 (913)
T KOG0451|consen 370 DRGRSSAY---------------------------------CSD-------------------IAKSIQAPVI-HVNGDD 396 (913)
T ss_pred cccccchh---------------------------------hhH-------------------HHHHhCCCEE-EeCCCC
Confidence 22322110 012 2567788877 899999
Q ss_pred HHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhhhhhcccCC------------cc--------------------
Q 005820 337 VDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKAADKYHG------------VA-------------------- 382 (676)
Q Consensus 337 ~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~------------~~-------------------- 382 (676)
+++++++-+.|-++ +-.+-++|.+...+-+|+-..+. ..+-+ ++
T Consensus 397 PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHneldd--p~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE 474 (913)
T KOG0451|consen 397 PEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDD--PTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKE 474 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccC--ccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHH
Confidence 99999887654432 12567899999988888732110 01111 00
Q ss_pred -----------------cccC----------------------ccccc-------------ccc----------------
Q 005820 383 -----------------KFDP----------------------ATGKQ-------------FKS---------------- 394 (676)
Q Consensus 383 -----------------~fd~----------------------~~g~~-------------~~~---------------- 394 (676)
.+.| .||-. ++.
T Consensus 475 ~~~~y~~~Ln~eL~~~~~y~Pp~~~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sR 554 (913)
T KOG0451|consen 475 MRDEYMKYLNEELALAPAYQPPPSYFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSR 554 (913)
T ss_pred HHHHHHHHHHHHHhcCCccCCCchhhHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHH
Confidence 0000 01100 000
Q ss_pred -----chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch------------------hhhhhhCCC---ceeeccc
Q 005820 395 -----SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL------------------NLFLRRFPT---RCFDVGI 448 (676)
Q Consensus 395 -----~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l------------------~~f~~~~p~---R~id~GI 448 (676)
......|..|-+-++-.++.+.-++.+-+.|+|.+|-- +.+... .+ -+-|..+
T Consensus 555 m~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM~VdQ~Td~~~IPLN~m~~~-qkg~LEvans~L 633 (913)
T KOG0451|consen 555 MKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAMLVDQQTDEMFIPLNSMEGG-QKGKLEVANSIL 633 (913)
T ss_pred HHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCcccccccceeeeeccccceeeeccccCCC-cCCeeEeccccc
Confidence 01234566666667778888888999999999977521 001100 12 2347789
Q ss_pred cHHHHHHHHHHHHhcC--CeeEEee-chhHHHHHHHHHHHhhh--------cCCCCEEEEeecCCCcCCCCCCCCChhhH
Q 005820 449 AEQHAVTFAAGLACEG--LKPFCAI-YSSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDV 517 (676)
Q Consensus 449 aE~~~v~~A~GlA~~G--~~p~~~t-~~~Fl~ra~dqi~~~~a--------~~~lpV~iv~~~~G~~G~dG~tH~~~~d~ 517 (676)
+|.+.+|+-.||+.+. ..++++. |.+|..-| ||+-|.- +...-+++...| |+.|. ||-|+.+.--
T Consensus 634 SEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGA--QIIiDTFi~sgE~KWl~ssglvmLLPH-GyDGA-gpeHSSCRiE 709 (913)
T KOG0451|consen 634 SEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGA--QIIIDTFIVSGETKWLESSGLVMLLPH-GYDGA-GPEHSSCRIE 709 (913)
T ss_pred cHhhhhhhhcccccCCcccceeehhhhcccccCc--eEEEeeeecccchhhhhhCCeEEEccC-CcCCC-CCccchhhHH
Confidence 9999999999999985 6678886 89987544 3332211 122335555555 55554 8899986544
Q ss_pred hHhhc-----------CCCCEEEecCCHHHHHHHHHHHH-HhCCCCeEEEecCCCCccccCCCCCC-CCccccCce--eE
Q 005820 518 TFMAC-----------LPNMVVMAPSDEAELFHMVATAA-AIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKG--RI 582 (676)
Q Consensus 518 a~~~~-----------iP~l~V~~Psd~~E~~~~~~~al-~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~--~v 582 (676)
.|+.- --||.|.-|.++.+.+.+++.-+ .+..+|.++..|+-.+ .+|...+ ...+..|.- .|
T Consensus 710 RFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LL---RlPaA~ST~~ef~PGTtf~nV 786 (913)
T KOG0451|consen 710 RFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLL---RLPAATSTHEEFQPGTTFHNV 786 (913)
T ss_pred HHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHh---hCcchhhhHhhcCCCcccccc
Confidence 45442 24789999999999999998654 4678899988776432 1221000 011111211 12
Q ss_pred eec------CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC----CEEEEEcCCCCCCH
Q 005820 583 LIE------GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGSIGGF 652 (676)
Q Consensus 583 l~e------G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~----~~vIvvEe~~~gG~ 652 (676)
+.+ .-+-+|+++|-......++-+.+..+. .+.++.+-++-|||.+.+...+++. +.|..-||...-|-
T Consensus 787 igd~~~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGa 865 (913)
T KOG0451|consen 787 IGDTIAKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGA 865 (913)
T ss_pred ccccccChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCc
Confidence 222 226788999999988777776553332 3789999999999999887776655 57889999875443
Q ss_pred HHHHH
Q 005820 653 GSHVV 657 (676)
Q Consensus 653 gs~v~ 657 (676)
.+-|.
T Consensus 866 WsFVr 870 (913)
T KOG0451|consen 866 WSFVR 870 (913)
T ss_pred ceeec
Confidence 33443
No 87
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.30 E-value=7.1e-10 Score=120.62 Aligned_cols=217 Identities=14% Similarity=0.170 Sum_probs=150.1
Q ss_pred hhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCCCC
Q 005820 435 FLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCG 513 (676)
Q Consensus 435 f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH~~ 513 (676)
+..+....|+.+ =+|.++++++.|+++.|.|.+++|.++.+..+.+.+ ..++.+++|++++. .|+|. ...-|++..
T Consensus 42 ~~~~~~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~Lm~E~l-~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~d 118 (365)
T COG0674 42 WKAKVGGVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLLMAEAL-GLAAGTETPLVIVVAQRPLP-STGLPIKGD 118 (365)
T ss_pred HHhhcCcEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHHHHHHH-HHHHhccCCeEEEEeccCcC-CCccccccc
Confidence 333344455555 789999999999999999999999888887777765 57899999988877 56554 222369999
Q ss_pred hhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCCC----ccc----------cCCCCCCCC---
Q 005820 514 SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGNG----IGV----------ELPPGNKGI--- 573 (676)
Q Consensus 514 ~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~~----~~~----------~~p~~~~~~--- 573 (676)
..|+...+.. ++.+++-+|.+|+..+...|++. ..-|+++.++.-.. ..+ .+++ ++.+
T Consensus 119 q~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~-~~~~~~~ 196 (365)
T COG0674 119 QSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPD-YEPYTAL 196 (365)
T ss_pred HHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccc-cCccccc
Confidence 9998877764 88888888999999999988874 34588876532110 000 0000 0000
Q ss_pred ----ccccC--------------------------------------c----eeEee-cCCcEEEEEechhHHHHHHHHH
Q 005820 574 ----PLEVG--------------------------------------K----GRILI-EGERVALLGYGTAVQSCLAASA 606 (676)
Q Consensus 574 ----~~~~g--------------------------------------k----~~vl~-eG~dv~Iva~Gs~v~~aleAa~ 606 (676)
+...| + ..+.. ++.+++||+||+....+.+++.
T Consensus 197 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~~ 276 (365)
T COG0674 197 DPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAVV 276 (365)
T ss_pred CCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHHH
Confidence 00001 0 00000 4568999999988877777765
Q ss_pred H-HHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHH
Q 005820 607 L-LESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHV 656 (676)
Q Consensus 607 ~-L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v 656 (676)
. ++++|++|+++.+|+++|||.+.+++++++.+.+.|++-.. .|+++.-+
T Consensus 277 ~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~~l 328 (365)
T COG0674 277 DLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAEPL 328 (365)
T ss_pred HHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchhhH
Confidence 4 56889999999999999999999999998877444444333 35544333
No 88
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.30 E-value=4e-10 Score=125.85 Aligned_cols=215 Identities=20% Similarity=0.210 Sum_probs=157.5
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCC---EEEEeecCCCcCCCCCCCCChhhH
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTHCGSFDV 517 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lp---V~iv~~~~G~~G~dG~tH~~~~d~ 517 (676)
+-+++++.+|.-+..+|.|+++.|.|.++.+-...+.++.|.+++. ++.... |++++|..|.. +.|...|-
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mKhVGlNvAsDpl~s~-ay~Gv~GGlviv~aDDpg~~-----SSqneqds 131 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMKHVGLNVASDPLMSL-AYAGVTGGLVIVVADDPGMH-----SSQNEQDS 131 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEecccccccchhhhhhh-hhcCccccEEEEEccCCCcc-----cccchhHh
Confidence 7899999999999999999999999999999999999999998754 666544 55555666641 23334455
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC------Cccc--cCCC-CCCC-Ccc-ccCcee--
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN------GIGV--ELPP-GNKG-IPL-EVGKGR-- 581 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~------~~~~--~~p~-~~~~-~~~-~~gk~~-- 581 (676)
.++...-.+.|+.|+|+||+.++++.+++. ..-|+++|..... +... ..|. ..++ ... ..++..
T Consensus 132 r~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~ 211 (640)
T COG4231 132 RAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRV 211 (640)
T ss_pred HHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeec
Confidence 666667788899999999999999999983 4559999875321 0000 0000 0010 100 111110
Q ss_pred -----------------------------EeecC--CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH
Q 005820 582 -----------------------------ILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (676)
Q Consensus 582 -----------------------------vl~eG--~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~ 630 (676)
.+..+ .++-||+.|-....+++|.+. .|++..++.+.+.+|||.+.
T Consensus 212 p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~---lgl~~~~lklg~~~Plp~~~ 288 (640)
T COG4231 212 PANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALED---LGLDDELLKLGTPYPLPEQL 288 (640)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHH---cCCCceeEEecCCcCCCHHH
Confidence 00013 689999999999999998654 58999999999999999999
Q ss_pred HHHHhccCCEEEEEcCCCCCCHHHHHHHHHHHcCC
Q 005820 631 IRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGL 665 (676)
Q Consensus 631 i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ 665 (676)
+++.++..+.|+||||... =+-.++.+.+.++|+
T Consensus 289 i~~F~~g~~~vlVVEE~~P-~iE~qv~~~l~~~g~ 322 (640)
T COG4231 289 IENFLKGLERVLVVEEGEP-FIEEQVKALLYDAGL 322 (640)
T ss_pred HHHHHhcCcEEEEEecCCc-hHHHHHHHHHHhcCC
Confidence 9999999999999999865 234556666666654
No 89
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.29 E-value=4.9e-11 Score=113.60 Aligned_cols=126 Identities=25% Similarity=0.300 Sum_probs=100.8
Q ss_pred chhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCC
Q 005820 431 GLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGP 509 (676)
Q Consensus 431 ~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~ 509 (676)
.+-+...+.|++.+..++.|++++++|.|+++.|.+|++.+ +.+|+.++++++. .++..++||+++....+..+.++.
T Consensus 25 ~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~~Pvl~i~~~~~~~~~~~~ 103 (154)
T cd06586 25 SLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEHLPVVFLIGARGISAQAKQ 103 (154)
T ss_pred HHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCChhhhccC
Confidence 34333344689999999999999999999999977888886 6999999999997 678899999999876665455577
Q ss_pred CCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecC
Q 005820 510 THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 558 (676)
Q Consensus 510 tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r 558 (676)
+||..++..+++.+|++.+..|++.++.. .+..++. ...+|++|++|+
T Consensus 104 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 104 TFQSMFDLGMYRSIPEANISSPSPAELPA-GIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred cccccCHHHHHHHhhheEEEeCCHHHHHH-HHHHHHHHHhcCCCCEEEEccC
Confidence 89999999999999999888877755444 4444443 346799998864
No 90
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.28 E-value=1.6e-11 Score=121.21 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=87.4
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|+|++|||+++.. .+| +.+|.+++.|+++||.||+.+.+..... +...
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~-~~~~-- 118 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIH-GPEA-- 118 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEec-cCCc--
Confidence 56899999999999999864 7899999999999753 455 7788888888777777776332211000 0000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcC----ceeeccCCCCCHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG----LYYIGPVDGHNVDDL 340 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G----~~~~~~vdGhd~~~l 340 (676)
.+ .+...+++..++++|| +++..+ ++.+++
T Consensus 119 --------------~~-----------------------------~~~~~~d~~~ia~a~G~~~~~~~~~v---~~~~el 152 (183)
T cd02005 119 --------------SY-----------------------------NDIANWNYTKLPEVFGGGGGGLSFRV---KTEGEL 152 (183)
T ss_pred --------------Cc-----------------------------ccCCCCCHHHHHHHhCCCccccEEEe---cCHHHH
Confidence 00 0111245566789999 566644 789999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeccC
Q 005820 341 VAILEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 341 ~~al~~a~~~~~~~P~lI~v~T~kg 365 (676)
.++|+++.+ ..++|++||+.|.+.
T Consensus 153 ~~al~~a~~-~~~~p~liev~~~~~ 176 (183)
T cd02005 153 DEALKDALF-NRDKLSLIEVILPKD 176 (183)
T ss_pred HHHHHHHHh-cCCCcEEEEEEcCcc
Confidence 999999875 137999999998653
No 91
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.27 E-value=9.8e-12 Score=141.96 Aligned_cols=128 Identities=22% Similarity=0.251 Sum_probs=97.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|.++|+|+|+++|.. ++.||||+|||+++ |..+.|.+|.++++|+++||.||+.+
T Consensus 406 ~~GtMG~glPaAIGAkla~P----~r~Vv~i~GDG~F~--m~~qEL~Ta~r~~lpv~ivv~nN~~~-------------- 465 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAAP----DRKVVAIAGDGGFM--MNGQELETAVRYGLPVKIVVLNNGGY-------------- 465 (550)
T ss_pred CCccccchHHHHHHHHhhCC----CCcEEEEEcccHHh--ccHHHHHHHHHhCCCEEEEEEECCcc--------------
Confidence 67899999999999999875 89999999999999 77888999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+.+|.+-+.+. .-+.+..++.++.+..++|+||+....+ .+.++|.++|
T Consensus 466 ----------------g~v~~~q~~~~------------~~~~~~~~~~~~~f~klAea~G~~g~~v---~~~~el~~al 514 (550)
T COG0028 466 ----------------GMVRQWQELFY------------GGRYSGTDLGNPDFVKLAEAYGAKGIRV---ETPEELEEAL 514 (550)
T ss_pred ----------------ccchHHHHHhc------------CCCcceeecCCccHHHHHHHcCCeeEEe---CCHHHHHHHH
Confidence 12222211100 0001112222222667899999998844 4899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+ .++|++|++.+.+.
T Consensus 515 ~~al~--~~~p~lidv~id~~ 533 (550)
T COG0028 515 EEALA--SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHh--CCCCEEEEEEecCc
Confidence 99987 58999999999876
No 92
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.27 E-value=2.3e-11 Score=131.86 Aligned_cols=168 Identities=20% Similarity=0.275 Sum_probs=113.1
Q ss_pred ccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHH
Q 005820 120 LGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGM 199 (676)
Q Consensus 120 lg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~ 199 (676)
++-.+.+-.+...+ .++|.+|.++|-.+. + +..+| ...+.+||.. .+..|++|+++|+|+|+
T Consensus 172 ~~r~~ai~~i~~~l-~~~~iVV~~~G~~s~---------e-l~~~~-~~~~~~~~~~------f~~~GsMG~a~p~AlG~ 233 (361)
T TIGR03297 172 MTREEAIAAILDHL-PDNTVIVSTTGKTSR---------E-LYELR-DRIGQGHARD------FLTVGSMGHASQIALGL 233 (361)
T ss_pred CCHHHHHHHHHHhC-CCCCEEEECCCCCcH---------H-HHHhh-cccccCCCCc------eEeechhhhHHHHHHHH
Confidence 55555554443333 346778888884332 1 22332 1224455532 23469999999999999
Q ss_pred HHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcCh
Q 005820 200 AVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 278 (676)
Q Consensus 200 AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~ 278 (676)
|+|.+ +++|||+.|||++. |...+|.+++.++ .|+++||.||+.+.. + +......
T Consensus 234 ala~p----~r~Vv~i~GDGsfl--m~~~eL~t~~~~~~~nli~VVlNNg~~~~-~----g~q~~~~------------- 289 (361)
T TIGR03297 234 ALARP----DQRVVCLDGDGAAL--MHMGGLATIGTQGPANLIHVLFNNGAHDS-V----GGQPTVS------------- 289 (361)
T ss_pred HHHCC----CCCEEEEEChHHHH--HHHHHHHHHHHhCCCCeEEEEEcCccccc-c----CCcCCCC-------------
Confidence 99965 88999999999998 5667899999887 599999999984221 1 1000000
Q ss_pred hhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEE
Q 005820 279 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 358 (676)
Q Consensus 279 ~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 358 (676)
...++..++++|||... +..++.++|.++++++.+ .++|++|
T Consensus 290 ----------------------------------~~~d~~~iA~a~G~~~~--~~v~~~~eL~~al~~a~~--~~gp~lI 331 (361)
T TIGR03297 290 ----------------------------------QHLDFAQIAKACGYAKV--YEVSTLEELETALTAASS--ANGPRLI 331 (361)
T ss_pred ----------------------------------CCCCHHHHHHHCCCceE--EEeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 01234455899998432 233899999999999976 4799999
Q ss_pred EEEeccCCC
Q 005820 359 HVVTEKGRG 367 (676)
Q Consensus 359 ~v~T~kg~G 367 (676)
++++.+|.+
T Consensus 332 eV~v~~g~~ 340 (361)
T TIGR03297 332 EVKVRPGSR 340 (361)
T ss_pred EEEecCCCc
Confidence 999998764
No 93
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.27 E-value=3.5e-11 Score=139.20 Aligned_cols=129 Identities=16% Similarity=0.285 Sum_probs=93.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. ++++||||+|||+++ +.+++|++|.++++|+++||.||+.+..-...++ ..
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~---~~- 504 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAET---VK- 504 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccc---cc-
Confidence 5688999999999999885 488999999999997 7789999999999999999999973211000000 00
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
| +.. ....++-..++..++++||+.+..+ ++.++|.++|
T Consensus 505 ---------------~--------------~~~---------~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~al 543 (578)
T PRK06112 505 ---------------F--------------GTH---------TDACHFAAVDHAAIARACGCDGVRV---EDPAELAQAL 543 (578)
T ss_pred ---------------c--------------CCc---------cccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 0 000 0000111235567799999998744 5799999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++.+ .++|++|||++.+..
T Consensus 544 ~~a~~--~~gp~lIev~~~~~~ 563 (578)
T PRK06112 544 AAAMA--APGPTLIEVITDPSA 563 (578)
T ss_pred HHHHh--CCCCEEEEEEcCccc
Confidence 99876 579999999997643
No 94
>PRK08266 hypothetical protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=139.56 Aligned_cols=129 Identities=22% Similarity=0.323 Sum_probs=93.7
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
.|++|+++|+|+|++++. ++++|||++|||+++.+ .+++.+|.++++|+++||.||+.+..
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~------------- 461 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGN------------- 461 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchH-------------
Confidence 489999999999999885 48899999999999955 68899999999999999888873211
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 345 (676)
+ +..++.. |. + +....++-.+++..++++||+.+..+ .+.++|.++++
T Consensus 462 -~-~~~~~~~----~~-------------~----------~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al~ 509 (542)
T PRK08266 462 -V-RRDQKRR----FG-------------G----------RVVASDLVNPDFVKLAESFGVAAFRV---DSPEELRAALE 509 (542)
T ss_pred -H-HHHHHHh----cC-------------C----------CcccCCCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHH
Confidence 0 0000000 00 0 00001111246677899999998744 57899999999
Q ss_pred HhhhcCCCCcEEEEEEeccCCC
Q 005820 346 EVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 346 ~a~~~~~~~P~lI~v~T~kg~G 367 (676)
++.+ .++|++||+.|.++..
T Consensus 510 ~a~~--~~~p~liev~i~~~~~ 529 (542)
T PRK08266 510 AALA--HGGPVLIEVPVPRGSE 529 (542)
T ss_pred HHHh--CCCcEEEEEEecCCCC
Confidence 9876 4789999999988753
No 95
>PRK07064 hypothetical protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=139.76 Aligned_cols=129 Identities=20% Similarity=0.308 Sum_probs=94.5
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
|++|+++|+|+|+++|. ++++|+|++|||+++ +...+|.+|..+++|+++||.||+.+.
T Consensus 405 g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~yg--------------- 463 (544)
T PRK07064 405 GGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLM--LNLGELATAVQENANMVIVLMNDGGYG--------------- 463 (544)
T ss_pred CccccccchhhhhhhhC----cCCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEeCChhH---------------
Confidence 78999999999999996 488999999999999 556789999999999999999887421
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 346 (676)
.+|.. +......+....++-.+++..++++||+++..+ ++.++|.+++++
T Consensus 464 ---------------~~~~~------------~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al~~ 513 (544)
T PRK07064 464 ---------------VIRNI------------QDAQYGGRRYYVELHTPDFALLAASLGLPHWRV---TSADDFEAVLRE 513 (544)
T ss_pred ---------------HHHHH------------HHHhcCCccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHHHH
Confidence 11111 000000000111222456778899999998754 689999999999
Q ss_pred hhhcCCCCcEEEEEEeccCCCc
Q 005820 347 VKNTKTTGPVLIHVVTEKGRGY 368 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T~kg~G~ 368 (676)
+.+ .++|++|||.+.....+
T Consensus 514 a~~--~~~p~lIeV~~~~~~~~ 533 (544)
T PRK07064 514 ALA--KEGPVLVEVDMLSIGPF 533 (544)
T ss_pred HHc--CCCCEEEEEEccccccc
Confidence 886 57999999998743333
No 96
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.24 E-value=3.6e-11 Score=137.95 Aligned_cols=128 Identities=17% Similarity=0.234 Sum_probs=95.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|..+++|+++||.||+.+.+
T Consensus 406 ~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpi~ivV~NN~~y~~------------ 467 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVRP----NTKVVSVSGDGGFL--FSSMELETAVRLKLNIVHIIWNDNGYNM------------ 467 (539)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchhhh--chHHHHHHHHHhCCCeEEEEEECCcchH------------
Confidence 56899999999999999964 88999999999999 6667799999999999999988874211
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+|.. +..... +....++-.+++..++++||+++..+ ++.++|.++|
T Consensus 468 ------------------~~~~------------~~~~~~-~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~al 513 (539)
T TIGR02418 468 ------------------VEFQ------------EEMKYQ-RSSGVDFGPIDFVKYAESFGAKGLRV---ESPDQLEPTL 513 (539)
T ss_pred ------------------HHHH------------HHHhcC-CcccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 1100 000000 00001222356778899999998755 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++.+ .++|++|++.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~v~~~~ 533 (539)
T TIGR02418 514 RQAME--VEGPVVVDIPVDYSD 533 (539)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99976 579999999987544
No 97
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.23 E-value=3.3e-11 Score=139.30 Aligned_cols=128 Identities=17% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++||||+|||+++. ...++.+|.++++|+++||.||+.+..
T Consensus 406 ~~gsmG~~~paAiGa~la~p----~~~vv~i~GDGsf~~--~~~el~Ta~~~~lpv~~vV~NN~~~g~------------ 467 (578)
T PRK06546 406 RHGSMANALPHAIGAQLADP----GRQVISMSGDGGLSM--LLGELLTVKLYDLPVKVVVFNNSTLGM------------ 467 (578)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEcCchHhh--hHHHHHHHHHhCCCeEEEEEECCcccc------------
Confidence 46899999999999999964 889999999999994 445799999999999999999984221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+ |..-.. .+ ......+.-.+++..++++||+++.. | ++.++|.+++
T Consensus 468 --i----------------~~~q~~----~~---------~~~~~~~~~~~df~~lA~a~G~~~~~-v--~~~~el~~al 513 (578)
T PRK06546 468 --V----------------KLEMLV----DG---------LPDFGTDHPPVDYAAIAAALGIHAVR-V--EDPKDVRGAL 513 (578)
T ss_pred --H----------------HHHHHh----cC---------CCcccccCCCCCHHHHHHHCCCeeEE-e--CCHHHHHHHH
Confidence 0 000000 00 00001112235667789999998874 4 5899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 514 REAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred HHHHh--CCCCEEEEEEeCCCc
Confidence 99876 589999999997654
No 98
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.23 E-value=3.8e-11 Score=138.32 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=93.8
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|++++.+ +++||||+|||+++ +..+++.+|.++++|+++||.||+.+.
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDGsf~--~~~~el~ta~~~~l~i~~vv~nN~~~~------------- 473 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLLFP----ERTVVAFAGDGCFL--MNGQELATAVQYGLPIIVIVVNNGMYG------------- 473 (557)
T ss_pred CCccccchHHHHHHHHHhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 45999999999999998864 88999999999999 777899999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.++..-+. ..+.. ....++-.+++..++++||+++.. + ++.++|.+++
T Consensus 474 -----------------~~~~~~~~---~~~~~---------~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 521 (557)
T PRK08199 474 -----------------TIRMHQER---EYPGR---------VSGTDLTNPDFAALARAYGGHGET-V--ERTEDFAPAF 521 (557)
T ss_pred -----------------HHHHHHHH---hcCCc---------cccccCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHH
Confidence 11100000 00000 000111234667789999999874 4 5789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+ .++|++|+|.|.+.
T Consensus 522 ~~a~~--~~gp~li~v~~~~~ 540 (557)
T PRK08199 522 ERALA--SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHh--CCCCEEEEEEeCHH
Confidence 99886 58999999999754
No 99
>PRK07524 hypothetical protein; Provisional
Probab=99.23 E-value=4.1e-11 Score=137.42 Aligned_cols=129 Identities=23% Similarity=0.272 Sum_probs=95.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+.+.
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~ta~~~~lpi~~vV~NN~~~g------------- 465 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ--FTLPELASAVEADLPLIVLLWNNDGYG------------- 465 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECCchH-------------
Confidence 4699999999999999996 489999999999998 445569999999999999999997321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.+|..-... +. .....++-.+++..++++||+++.. + .+.++|.+++
T Consensus 466 -----------------~i~~~~~~~----~~---------~~~~~~~~~~d~~~~A~a~G~~~~~-v--~~~~el~~al 512 (535)
T PRK07524 466 -----------------EIRRYMVAR----DI---------EPVGVDPYTPDFIALARAFGCAAER-V--ADLEQLQAAL 512 (535)
T ss_pred -----------------HHHHHHHHh----cC---------CccccCCCCCCHHHHHHHCCCcEEE-e--CCHHHHHHHH
Confidence 111110000 00 0000112235667889999999874 4 5899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
+++.+ .++|++|||.+.+-++
T Consensus 513 ~~a~~--~~~p~liev~~~~~~~ 533 (535)
T PRK07524 513 RAAFA--RPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHh--CCCCEEEEEECCcccc
Confidence 99886 5899999999987554
No 100
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.23 E-value=3.3e-11 Score=123.55 Aligned_cols=139 Identities=20% Similarity=0.301 Sum_probs=91.4
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcc-cccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
.|.+|+++++|+|.+++ .++++|||++|||++ + +...+|.+|.+++.|+++||.||+.+.. |..+.......
T Consensus 61 ~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~--m~~~eL~ta~~~~~pv~~vVlNN~~yg~-tg~q~~~~~~~ 133 (235)
T cd03376 61 AAAVASGIEAALKALGR----GKDITVVAFAGDGGTAD--IGFQALSGAAERGHDILYICYDNEAYMN-TGIQRSGSTPY 133 (235)
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHh--hHHHHHHHHHHcCCCeEEEEECCccccc-CCCCCCCCCCC
Confidence 46888888888887665 358999999999995 5 5567899999999999999999985332 11111100000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+..+ .. ...+..+. ....-.+++..+++++|+.++..++-++.++|.+++
T Consensus 134 ~~~~------~~---------------~~~g~~~~---------~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al 183 (235)
T cd03376 134 GAWT------TT---------------TPVGKVSF---------GKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKV 183 (235)
T ss_pred CCEe------ec---------------CCCCcccc---------ccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHH
Confidence 0000 00 00000000 000011455677999999987555668999999999
Q ss_pred HHhhhcCCCCcEEEEEEec
Q 005820 345 EEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~ 363 (676)
+++.+ .++|++|++.+.
T Consensus 184 ~~a~~--~~gP~lIev~~~ 200 (235)
T cd03376 184 KKALS--IEGPAYIHILSP 200 (235)
T ss_pred HHHHh--CCCCEEEEEECC
Confidence 99986 479999999865
No 101
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.22 E-value=4.2e-11 Score=138.75 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=95.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 435 ~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~eL~Ta~r~~lpviivV~NN~~~~------------- 495 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAHP----DDDVVCITGEGSIQ--MCIQELSTCLQYDTPVKIISLNNRYLG------------- 495 (587)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhh--cCHHHHHHHHHcCCCeEEEEEECCcch-------------
Confidence 55899999999999999964 88999999999999 666789999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+|..-... .+ ..+. .++ ..+++..+.++||+++..+ ++.++|.+
T Consensus 496 -----------------~i~~~q~~~---~~----------~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~eL~~ 542 (587)
T PRK06965 496 -----------------MVRQWQEIE---YS----------KRYSHSYMDALPDFVKLAEAYGHVGMRI---EKTSDVEP 542 (587)
T ss_pred -----------------HHHHHHHHh---cC----------CCccccCCCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 111110000 00 0000 011 1256778899999998755 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+|+++.+. .++|++|+|.+.+..
T Consensus 543 al~~a~~~-~~~p~lieV~i~~~~ 565 (587)
T PRK06965 543 ALREALRL-KDRTVFLDFQTDPTE 565 (587)
T ss_pred HHHHHHhc-CCCcEEEEEEecccc
Confidence 99998752 368999999998644
No 102
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.22 E-value=3.7e-11 Score=119.67 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=89.1
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa-~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
|.+|+++|+|+|+++|. ++++|||++|||+ ++ +...++.+|.+++.|+++||.||+.+......+. .....+
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~--m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~-~~~~~~ 123 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAA--IGGNHFIHAARRNIDITVIVHNNQIYGLTKGQAS-PTTPEG 123 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhh--ccHHHHHHHHHhCCCeEEEEEcCcccccCCCccC-CCCCCC
Confidence 78899999999999986 4899999999999 45 4456799999999999999999974332110000 000000
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 345 (676)
... .....+. ..-.+++..+++++|+.++..+.-.+.++|.++|+
T Consensus 124 ~~~---------------------~~~~~~~--------------~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~ 168 (193)
T cd03375 124 FKT---------------------KTTPYGN--------------IEEPFNPLALALAAGATFVARGFSGDIKQLKEIIK 168 (193)
T ss_pred Ccc---------------------cCCCCCC--------------CCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHH
Confidence 000 0000000 00013455678999998853223368999999999
Q ss_pred HhhhcCCCCcEEEEEEec
Q 005820 346 EVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 346 ~a~~~~~~~P~lI~v~T~ 363 (676)
++.+ .++|++|++.+.
T Consensus 169 ~al~--~~gp~vIev~~~ 184 (193)
T cd03375 169 KAIQ--HKGFSFVEVLSP 184 (193)
T ss_pred HHHh--cCCCEEEEEECC
Confidence 9986 589999999865
No 103
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.22 E-value=3.8e-11 Score=138.78 Aligned_cols=128 Identities=18% Similarity=0.245 Sum_probs=94.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|.|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.+
T Consensus 406 ~~G~mG~~lpaAiGa~la~p----~r~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g~------------ 467 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAHP----GRQVVALSGDGGFS--MLMGDFLSLVQLKLPVKIVVFNNSVLGF------------ 467 (574)
T ss_pred CcccccchHHHHHHHHHhCC----CCeEEEEecCcHHh--ccHHHHHHHHHhCCCeEEEEEeCCcccc------------
Confidence 55899999999999999864 88999999999999 5566799999999999999988874211
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+. ..+.. ........++-.+++..++++||+++..+ ++.++|.++|
T Consensus 468 --i~-~~~~~----------------------------~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 513 (574)
T PRK09124 468 --VA-MEMKA----------------------------GGYLTDGTDLHNPDFAAIAEACGITGIRV---EKASELDGAL 513 (574)
T ss_pred --HH-HHHHh----------------------------cCCccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 10 00000 00000111222356778899999998755 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++.+ .++|++|+|.+.+..
T Consensus 514 ~~a~~--~~~p~lIev~i~~~~ 533 (574)
T PRK09124 514 QRAFA--HDGPALVDVVTAKQE 533 (574)
T ss_pred HHHHh--CCCCEEEEEEecCcc
Confidence 99876 579999999987544
No 104
>PRK05858 hypothetical protein; Provisional
Probab=99.21 E-value=6.5e-11 Score=135.97 Aligned_cols=128 Identities=17% Similarity=0.134 Sum_probs=95.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++++|+|+++|.+ +++|||++|||+++ +....+.+|.++++|+++||.||+.+.
T Consensus 405 ~~gsmG~~lp~aiGa~la~p----~r~vv~i~GDG~f~--~~~~eL~Ta~~~~lpi~ivV~NN~~y~------------- 465 (542)
T PRK05858 405 PFGCLGTGPGYALAARLARP----SRQVVLLQGDGAFG--FSLMDVDTLVRHNLPVVSVIGNNGIWG------------- 465 (542)
T ss_pred CccccccchhHHHHHHHhCC----CCcEEEEEcCchhc--CcHHHHHHHHHcCCCEEEEEEeCCchh-------------
Confidence 45899999999999999864 89999999999999 666779999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+|..-.. ..+. ....++ -.+++..+.++||..+..+ .+.++|.++
T Consensus 466 -----------------~~~~~~~~---~~~~----------~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 512 (542)
T PRK05858 466 -----------------LEKHPMEA---LYGY----------DVAADLRPGTRYDEVVRALGGHGELV---TVPAELGPA 512 (542)
T ss_pred -----------------hHHHHHHH---hcCC----------ccccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 11100000 0000 001112 1357788899999988755 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
|+++.+ .++|++|++.|.+..
T Consensus 513 l~~a~~--~~~p~lIev~~~~~~ 533 (542)
T PRK05858 513 LERAFA--SGVPYLVNVLTDPSV 533 (542)
T ss_pred HHHHHh--CCCcEEEEEEECCCc
Confidence 999876 589999999997653
No 105
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.21 E-value=4.5e-11 Score=137.43 Aligned_cols=127 Identities=18% Similarity=0.340 Sum_probs=94.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ ++++|||++|||+++ +...+|.+|.++++|+++||.||+.+.+
T Consensus 394 ~~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~--~~~~eL~Ta~~~~lpi~ivV~NN~~~g~------------ 456 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFT--MTMMELITAKKYDLPVKIIIYNNSKLGM------------ 456 (549)
T ss_pred CcchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHh--hhHHHHHHHHHHCCCeEEEEEECCccch------------
Confidence 46999999999999999852 178999999999999 6667899999999999999999974211
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
++.. +... ..+.+..++-.+++..++++||+++..+ ++.++|..++
T Consensus 457 ------------------i~~~------------q~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al 502 (549)
T PRK06457 457 ------------------IKFE------------QEVM-GYPEWGVDLYNPDFTKIAESIGFKGFRL---EEPKEAEEII 502 (549)
T ss_pred ------------------HHHH------------HHHh-cCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 1100 0000 0000111222356788899999998855 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEecc
Q 005820 345 EEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~k 364 (676)
+++.+ .++|++|+|.|.+
T Consensus 503 ~~a~~--~~~p~lIeV~i~~ 520 (549)
T PRK06457 503 EEFLN--TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHh--CCCCEEEEEEeCc
Confidence 99886 5799999999974
No 106
>PRK08611 pyruvate oxidase; Provisional
Probab=99.21 E-value=5.2e-11 Score=137.65 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=95.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|++++.|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 406 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~--m~~~eL~Ta~r~~l~~iivV~NN~~~g------------- 466 (576)
T PRK08611 406 WLGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFS--MVMQDFVTAVKYKLPIVVVVLNNQQLA------------- 466 (576)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHh--hhHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 4589999999999999986 488999999999999 556789999999999999888887421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.++.. +... ....+..++-..++..++++||..+..+ ++.++|.++|
T Consensus 467 -----------------~i~~~------------q~~~-~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 513 (576)
T PRK08611 467 -----------------FIKYE------------QQAA-GELEYAIDLSDMDYAKFAEACGGKGYRV---EKAEELDPAF 513 (576)
T ss_pred -----------------HHHHH------------HHHh-cCCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 11100 0000 0000111222357788899999998855 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++.+ .++|++|||.+.+..
T Consensus 514 ~~a~~--~~~p~lIeV~vd~~~ 533 (576)
T PRK08611 514 EEALA--QDKPVIIDVYVDPNA 533 (576)
T ss_pred HHHHh--CCCCEEEEEEeCCcc
Confidence 99886 589999999997644
No 107
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.20 E-value=6.1e-11 Score=137.54 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=94.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.. +++||||+|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 428 ~~gsmG~glpaaiGa~lA~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvi~vV~NN~~y-------------- 487 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAHP----DALVIDIAGDASIQ--MCIQEMSTAVQYNLPVKIFILNNQYM-------------- 487 (595)
T ss_pred CchhhhhhHHHHHHHHHhCC----CCeEEEEEcCchhh--ccHHHHHHHHHhCCCeEEEEEeCCcc--------------
Confidence 45899999999999999864 88999999999999 66677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+.+|..-... .+... ..... -.+++..++++||+++..+ .+.++|.++
T Consensus 488 ----------------~~i~~~q~~~---~~~~~---------~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 536 (595)
T PRK09107 488 ----------------GMVRQWQQLL---HGNRL---------SHSYTEAMPDFVKLAEAYGAVGIRC---EKPGDLDDA 536 (595)
T ss_pred ----------------HHHHHHHHHH---hCCcc---------ccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 1122110000 00000 00000 1256778899999998754 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg 365 (676)
|+++.+ .++|++|+|.+.+-
T Consensus 537 l~~a~~--~~~p~lIeV~i~~~ 556 (595)
T PRK09107 537 IQEMID--VDKPVIFDCRVANL 556 (595)
T ss_pred HHHHHh--CCCCEEEEEEecCc
Confidence 999876 47999999999753
No 108
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.20 E-value=9.4e-11 Score=123.13 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=108.8
Q ss_pred cCCCccchhhHHHHHHHHHchhcCCC-CeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCC
Q 005820 184 FGTGHSSTSISAGLGMAVGRDLKGRK-NNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (676)
Q Consensus 184 ~g~G~~G~~ls~A~G~AlA~~~~~~~-~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~ 262 (676)
.-....|.+++.|.|+++|.+.++++ ..|++++|||++..+-. |+|++|..++.|+++||.||+ +...|..+.+++.
T Consensus 66 ~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~-~~~~TGgQ~S~~T 143 (300)
T PRK11864 66 VLHTAFAATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNE-AYMNTGIQRSSST 143 (300)
T ss_pred ceeehhhChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCe-eeecCCCCCCCCC
Confidence 34677888999999999999887664 55666999999988764 999999999999999999999 4556666666666
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 263 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
+.|+..+. ...|.... + -+-..+..++|..|+..++--|+.++.+
T Consensus 144 p~ga~t~t---------------------sp~G~~~~----k----------kdi~~i~~a~g~~yVA~~~~~~~~~~~~ 188 (300)
T PRK11864 144 PYGAWTTT---------------------TPGGKREH----K----------KPVPDIMAAHKVPYVATASIAYPEDFIR 188 (300)
T ss_pred cCCCcccc---------------------CCCCCcCC----C----------CCHHHHHHHcCCCEEEEEeCCCHHHHHH
Confidence 66653210 00111100 0 0112347789999988888889999999
Q ss_pred HHHHhhhcCCCCcEEEEEEec--cCCCcc
Q 005820 343 ILEEVKNTKTTGPVLIHVVTE--KGRGYP 369 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~--kg~G~~ 369 (676)
++++|.+ .+||.+|++.+. .++++.
T Consensus 189 ~i~~A~~--~~Gps~I~~~spC~~~~~~~ 215 (300)
T PRK11864 189 KLKKAKE--IRGFKFIHLLAPCPPGWRFD 215 (300)
T ss_pred HHHHHHh--CCCCEEEEEeCCCCCCCCcC
Confidence 9999987 579999999875 344443
No 109
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.20 E-value=6.6e-11 Score=136.59 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=93.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. ++++|||++|||+++ +...++.+|.++++|+++||.||+.+..
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~--~~~~el~Ta~~~~lpi~~vV~NN~~~~~------------ 481 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQ--MNIQELQTIAENNIPVKVFIINNKFLGM------------ 481 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhh--ccHHHHHHHHHhCCCeEEEEEECCccHH------------
Confidence 4599999999999999985 489999999999997 5556799999999999999999984221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
++..-... .+. +....++-.+++..+.++||++...+ ++.+++.+++
T Consensus 482 ------------------~~~~q~~~---~~~---------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 528 (570)
T PRK06725 482 ------------------VRQWQEMF---YEN---------RLSESKIGSPDFVKVAEAYGVKGLRA---TNSTEAKQVM 528 (570)
T ss_pred ------------------HHHHHHHh---cCC---------ccccCcCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 11000000 000 00001111356677899999998744 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+ .++|++|++.+...
T Consensus 529 ~~a~~--~~~p~liev~id~~ 547 (570)
T PRK06725 529 LEAFA--HEGPVVVDFCVEEG 547 (570)
T ss_pred HHHHh--CCCCEEEEEEeCCc
Confidence 99986 58999999999753
No 110
>PLN02470 acetolactate synthase
Probab=99.20 E-value=6.5e-11 Score=137.16 Aligned_cols=132 Identities=16% Similarity=0.223 Sum_probs=94.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 424 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~v~ivV~NN~~yg------------- 484 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAANP----DAIVVDIDGDGSFI--MNIQELATIHVENLPVKIMVLNNQHLG------------- 484 (585)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCcch-------------
Confidence 45999999999999999964 88999999999999 556789999999999999999887421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHh-----hccCCCccchhhhcCceeeccCCCCCHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR-----GMISGSGSTLFEELGLYYIGPVDGHNVDD 339 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~-----~~~~~~~~~lfea~G~~~~~~vdGhd~~~ 339 (676)
.++..-+... +.+ ....+.. ....+++..++++||+++..+ ++.++
T Consensus 485 -----------------~i~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v---~~~~e 535 (585)
T PLN02470 485 -----------------MVVQWEDRFY---KAN------RAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARV---TRKSD 535 (585)
T ss_pred -----------------HHHHHHHHHh---CCc------eeeeecCccccccCCCCCHHHHHHHCCCeEEEE---CCHHH
Confidence 1111100000 000 0000000 001146677899999998755 78999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEeccCC
Q 005820 340 LVAILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 340 l~~al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
|.++|+++.+ .++|++|||.+.+..
T Consensus 536 l~~al~~a~~--~~~p~lieV~i~~~~ 560 (585)
T PLN02470 536 LREAIQKMLD--TPGPYLLDVIVPHQE 560 (585)
T ss_pred HHHHHHHHHh--CCCCEEEEEEeCCcc
Confidence 9999999986 579999999997544
No 111
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.20 E-value=6.6e-11 Score=136.09 Aligned_cols=128 Identities=22% Similarity=0.351 Sum_probs=94.8
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.. +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 399 ~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~l~v~ivV~NN~~~~------------- 459 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVARP----DDTVICVSGDGSFM--MNVQELGTIKRKQLPVKIVLLDNQRLG------------- 459 (548)
T ss_pred chhhhhchHHHHHHHHHhCC----CCcEEEEEccchhh--ccHHHHHHHHHhCCCeEEEEEeCCccH-------------
Confidence 45899999999999999964 88999999999999 555779999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+|.. +..... ..+. .++ -.+++..++++||+++..+ .+.++|.+
T Consensus 460 -----------------~~~~~------------~~~~~~-~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 506 (548)
T PRK08978 460 -----------------MVRQW------------QQLFFD-ERYSETDLSDNPDFVMLASAFGIPGQTI---TRKDQVEA 506 (548)
T ss_pred -----------------HHHHH------------HHHHhC-CcceecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 11111 000000 0000 111 1256778899999998855 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+|+++.+ .++|++|||.+.+..
T Consensus 507 al~~a~~--~~~p~lIeV~id~~~ 528 (548)
T PRK08978 507 ALDTLLN--SEGPYLLHVSIDELE 528 (548)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999876 579999999997644
No 112
>PRK08322 acetolactate synthase; Reviewed
Probab=99.20 E-value=7.8e-11 Score=135.47 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=95.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ +...+|.+|.++++|+++||.||+.+.+
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~iiV~NN~~~g~------------ 465 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFM--MNSQELETAVRLGLPLVVLILNDNAYGM------------ 465 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHh--ccHHHHHHHHHhCCCeEEEEEeCCCcch------------
Confidence 5689999999999999986 488999999999999 5567799999999999999999974211
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+|..-+ ... .+.+..++-.+++..++++||+++..+ .+.++|.+++
T Consensus 466 ------------------~~~~~~------------~~~-~~~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 511 (547)
T PRK08322 466 ------------------IRWKQE------------NMG-FEDFGLDFGNPDFVKYAESYGAKGYRV---ESADDLLPTL 511 (547)
T ss_pred ------------------HHHHHH------------hhc-CCcccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 110000 000 000111122357788899999998855 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
+++.+ .++|++|||.|.+...
T Consensus 512 ~~a~~--~~~p~lIev~v~~~~~ 532 (547)
T PRK08322 512 EEALA--QPGVHVIDCPVDYSEN 532 (547)
T ss_pred HHHHh--CCCCEEEEEEecCccC
Confidence 99876 5799999999976544
No 113
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.19 E-value=8e-11 Score=136.11 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=94.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 419 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~r~~l~v~ivV~NN~~y-------------- 478 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMALP----EETVVCVTGDGSIQ--MNIQELSTALQYELPVLVLNLNNRYL-------------- 478 (574)
T ss_pred CccchhhHHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCchh--------------
Confidence 45899999999999999964 88999999999999 66678999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+.+|..-+.. .+. +....++ -.+++..++++||.....+ .+.++|.++
T Consensus 479 ----------------g~i~~~q~~~---~~~---------~~~~~~~~~~~d~~~iA~a~G~~g~~v---~~~~eL~~a 527 (574)
T PRK07979 479 ----------------GMVKQWQDMI---YSG---------RHSQSYMQSLPDFVRLAEAYGHVGIQI---SHPDELESK 527 (574)
T ss_pred ----------------hHHHHHHHHh---cCC---------ccccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 1122110000 000 0000011 1256778899999988754 689999999
Q ss_pred HHHhhhc-CCCCcEEEEEEeccC
Q 005820 344 LEEVKNT-KTTGPVLIHVVTEKG 365 (676)
Q Consensus 344 l~~a~~~-~~~~P~lI~v~T~kg 365 (676)
|+++.+. ..++|++|+|.+.+-
T Consensus 528 l~~a~~~~~~~~p~lIeV~i~~~ 550 (574)
T PRK07979 528 LSEALEQVRNNRLVFVDVTVDGS 550 (574)
T ss_pred HHHHHhccCCCCcEEEEEEECCc
Confidence 9998752 137999999998753
No 114
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.19 E-value=7e-11 Score=137.63 Aligned_cols=128 Identities=20% Similarity=0.303 Sum_probs=94.8
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ |....+.+|.++++|+++||.||+.+.
T Consensus 432 ~~g~mG~glpaAiGA~lA~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpvi~vV~NN~~~g------------- 492 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVALP----DEEVICIAGDASFL--MNIQELGTLAQYGINVKTVIINNGWQG------------- 492 (616)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEcchHhh--hhHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 45899999999999999864 88999999999999 666779999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc--cCCCccchhhhcCceeeccCCCCCHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM--ISGSGSTLFEELGLYYIGPVDGHNVDDLV 341 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~--~~~~~~~lfea~G~~~~~~vdGhd~~~l~ 341 (676)
.++..-+... + +.+. .++ -.+++..++++||.+++.+ ++.++|.
T Consensus 493 -----------------~i~~~q~~~~---~----------~~~~~~~~~~~~~d~~~~A~a~G~~g~~V---~~~~el~ 539 (616)
T PRK07418 493 -----------------MVRQWQESFY---G----------ERYSASNMEPGMPDFVKLAEAFGVKGMVI---SERDQLK 539 (616)
T ss_pred -----------------HHHHHHHHhc---C----------CCceeecCCCCCCCHHHHHHHCCCeEEEe---CCHHHHH
Confidence 1111100000 0 0000 011 1246678899999998855 6899999
Q ss_pred HHHHHhhhcCCCCcEEEEEEeccCC
Q 005820 342 AILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 342 ~al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
++|+++.+ .++|+||+|.+.+..
T Consensus 540 ~al~~a~~--~~~p~lIeV~i~~~~ 562 (616)
T PRK07418 540 DAIAEALA--HDGPVLIDVHVRRDE 562 (616)
T ss_pred HHHHHHHh--CCCCEEEEEEecCcc
Confidence 99999876 578999999997543
No 115
>PRK12474 hypothetical protein; Provisional
Probab=99.18 E-value=1.4e-10 Score=132.59 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=91.4
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
.|++|+++|+|+|+++|.+ +++|||++|||+++ |....|.+|.++++|+++||.||+.+.
T Consensus 388 ~gsmG~glpaAiGa~lA~p----~r~vv~i~GDG~f~--m~~qEL~Ta~r~~lpv~iiV~NN~~y~-------------- 447 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAAP----DRKVVCPQGDGGAA--YTMQALWTMARENLDVTVVIFANRSYA-------------- 447 (518)
T ss_pred CCccCccHHHHHHHHHHCC----CCcEEEEEcCchhc--chHHHHHHHHHHCCCcEEEEEcCCcch--------------
Confidence 3999999999999999964 89999999999999 666789999999999999999998422
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhcc--CCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~--~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+|..-+.. +..... .......+.. ..++..++++||+++..+ .+.++|.++
T Consensus 448 ----------------~i~~~~~~~----~~~~~~---~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv---~~~~eL~~a 501 (518)
T PRK12474 448 ----------------ILNGELQRV----GAQGAG---RNALSMLDLHNPELNWMKIAEGLGVEASRA---TTAEEFSAQ 501 (518)
T ss_pred ----------------HHHHHHHhh----cCCCCC---ccccccccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 111100000 000000 0000000111 136778899999988754 679999999
Q ss_pred HHHhhhcCCCCcEEEEEEe
Q 005820 344 LEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T 362 (676)
|+++.+ .++|++|++.+
T Consensus 502 l~~a~~--~~~p~liev~~ 518 (518)
T PRK12474 502 YAAAMA--QRGPRLIEAMI 518 (518)
T ss_pred HHHHHc--CCCCEEEEEEC
Confidence 999976 58999999974
No 116
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.18 E-value=8.8e-11 Score=135.76 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=94.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|..+++|+++||.||+.+.
T Consensus 419 ~~g~mG~glpaAiGa~la~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~ivV~NN~~yg------------- 479 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLARP----DKVVVDLDGDGSFL--MTGTNLATAVDEHIPVISVIFDNRTLG------------- 479 (572)
T ss_pred CcccccchhHHHHHHHHhCC----CCeEEEEEccchHh--cchHHHHHHHHhCCCeEEEEEECCchH-------------
Confidence 45999999999999999964 78999999999999 555789999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhcc-CCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~-~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+|..-... .+. +....++. .+++..++++||.++..+ ++.++|.++
T Consensus 480 -----------------~i~~~q~~~---~~~---------~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~a 527 (572)
T PRK06456 480 -----------------LVRQVQDLF---FGK---------RIVGVDYGPSPDFVKLAEAFGALGFNV---TTYEDIEKS 527 (572)
T ss_pred -----------------HHHHHHHHh---hCC---------CcccccCCCCCCHHHHHHHCCCeeEEe---CCHHHHHHH
Confidence 111110000 000 00001111 246778899999998755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
|+++.+ .++|++|||.+.+..
T Consensus 528 l~~a~~--~~~p~lIev~v~~~~ 548 (572)
T PRK06456 528 LKSAIK--EDIPAVIRVPVDKEE 548 (572)
T ss_pred HHHHHh--CCCCEEEEEEeCccc
Confidence 999876 589999999997633
No 117
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.18 E-value=8.9e-11 Score=135.66 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=93.8
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 419 ~~g~mG~glpaaiGa~la~p----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y-------------- 478 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAMP----DETVVCVTGDGSIQ--MNIQELSTALQYDIPVKIINLNNRFL-------------- 478 (572)
T ss_pred CcccccchhhHHHhhhhhCC----CCeEEEEEcchHhh--ccHHHHHHHHHcCCCeEEEEEeCCcc--------------
Confidence 45889999999999999964 88999999999999 66677999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
+.+|..-... .+. .+. ..+ ..+++..+.++||.....+ .+.++|.+
T Consensus 479 ----------------~~i~~~q~~~---~~~----------~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~eL~~ 526 (572)
T PRK08979 479 ----------------GMVKQWQDMI---YQG----------RHSHSYMDSVPDFAKIAEAYGHVGIRI---SDPDELES 526 (572)
T ss_pred ----------------HHHHHHHHHH---hCC----------cccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 1111110000 000 000 001 1256778899999988755 68999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg 365 (676)
+|+++.+. .++|++|+|.+.+.
T Consensus 527 al~~a~~~-~~~p~lIev~i~~~ 548 (572)
T PRK08979 527 GLEKALAM-KDRLVFVDINVDET 548 (572)
T ss_pred HHHHHHhc-CCCcEEEEEEeCCc
Confidence 99998752 37899999998753
No 118
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.18 E-value=7.9e-11 Score=136.40 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=94.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 416 ~~gsmG~glpaaiGa~lA~p----dr~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~iV~NN~~yg------------- 476 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAADP----KRNVVALSGDYDFQ--FMIEELAVGAQHNIPYIHVLVNNAYLG------------- 476 (588)
T ss_pred ccccccchHhHHHhhhhhCC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 45889999999999999964 88999999999999 556789999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhh-c-ccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVT-K-QIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~-~-~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+|..-.... . ..+....... .. -.+...+++..++|+||.++..+ ++.++|.+
T Consensus 477 -----------------~i~~~q~~~~~~~~~~~~~~~~~--~~--~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~ 532 (588)
T TIGR01504 477 -----------------LIRQAQRAFDMDYCVQLAFENIN--SS--EVNGYGVDHVKVAEGLGCKAIRV---FKPEEIAP 532 (588)
T ss_pred -----------------HHHHHHHHhcccccceeeccccc--cc--cccCCCCCHHHHHHHCCCEEEEE---CCHHHHHH
Confidence 1111100000 0 0000000000 00 00111356778899999998755 68999999
Q ss_pred HHHHhhhc--CCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNT--KTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~--~~~~P~lI~v~T~kg~ 366 (676)
+|+++.+. ..++|++|+|.+.+..
T Consensus 533 al~~a~~~~~~~~~p~lIeV~i~~~~ 558 (588)
T TIGR01504 533 AFEQAKALMAEHRVPVVVEVILERVT 558 (588)
T ss_pred HHHHHHhhcccCCCcEEEEEEecccc
Confidence 99998631 1479999999986543
No 119
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.18 E-value=1e-10 Score=135.24 Aligned_cols=129 Identities=19% Similarity=0.223 Sum_probs=94.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +....|.+|.++++|+++||.||+.+.
T Consensus 421 ~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~r~~lpv~ivV~NN~~y~------------- 481 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAFP----DQDVACVTGEGSIQ--MNIQELSTCLQYGLPVKIINLNNGALG------------- 481 (574)
T ss_pred CcchhhchHHHHHHHHHhCC----CCeEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCccH-------------
Confidence 45899999999999999964 88999999999999 666789999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+|..-+.. .+. .+. .++ -.+++..++++||..+..+ .+.++|.+
T Consensus 482 -----------------~i~~~q~~~---~~~----------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 528 (574)
T PRK06466 482 -----------------MVRQWQDMQ---YEG----------RHSHSYMESLPDFVKLAEAYGHVGIRI---TDLKDLKP 528 (574)
T ss_pred -----------------HHHHHHHHh---cCC----------ceeecCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 111110000 000 000 011 1256778899999998755 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+|+++.+. .++|++|++.+.+..
T Consensus 529 al~~a~~~-~~~p~lIev~i~~~~ 551 (574)
T PRK06466 529 KLEEAFAM-KDRLVFIDIYVDRSE 551 (574)
T ss_pred HHHHHHhc-CCCcEEEEEEeCCcc
Confidence 99988752 279999999997643
No 120
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.17 E-value=1e-10 Score=135.57 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=93.9
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++||||+|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 428 ~~g~mG~glpaaiGaala~p----~~~vv~i~GDG~f~--m~~~eL~Ta~~~~l~~~~vV~NN~~y~------------- 488 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHP----NELVICISGDASFQ--MNLQELGTIAQYNLPIKIIIINNKWQG------------- 488 (585)
T ss_pred cccchhhhHHHHHHHHHhCC----CCeEEEEEcchhhh--hhHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 56999999999999999965 88999999999999 666789999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.+|..-+... +..... .....-.+++..+.++||.++..+ ++.++|.++|
T Consensus 489 -----------------~i~~~q~~~~---~~~~~~-------~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 538 (585)
T CHL00099 489 -----------------MVRQWQQAFY---GERYSH-------SNMEEGAPDFVKLAEAYGIKGLRI---KSRKDLKSSL 538 (585)
T ss_pred -----------------HHHHHHHHhc---CCCccc-------ccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHHH
Confidence 1111100000 000000 000001245677899999998754 6799999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+ .++|.+|||.|...
T Consensus 539 ~~a~~--~~~p~liev~v~~~ 557 (585)
T CHL00099 539 KEALD--YDGPVLIDCQVIED 557 (585)
T ss_pred HHHHh--CCCCEEEEEEECCC
Confidence 99986 57999999999753
No 121
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.17 E-value=1.1e-10 Score=134.93 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=94.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|.+ +++|||++|||+++ +..++|.+|.++++|+++||.||+.+
T Consensus 419 ~~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~--~~~~eL~ta~~~~lpv~~vV~NN~~~-------------- 478 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAHP----EATVVCVTGDGSIQ--MNIQELSTAKQYDIPVVIVSLNNRFL-------------- 478 (574)
T ss_pred CcccccchhHHHHHHHhhcC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEECchh--------------
Confidence 45889999999999999964 78999999999998 55688999999999999999999842
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+.+|..-... .+... ..... -.+++..+.++||+.+..+ ++.++|..+
T Consensus 479 ----------------~~i~~~q~~~---~~~~~---------~~~~~~~~~d~~~la~a~G~~~~~v---~~~~eL~~a 527 (574)
T PRK06882 479 ----------------GMVKQWQDLI---YSGRH---------SQVYMNSLPDFAKLAEAYGHVGIQI---DTPDELEEK 527 (574)
T ss_pred ----------------HHHHHHHHHh---cCCcc---------cccCCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 1111110000 00000 00000 1245667899999998854 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
|+++.+. .++|++|||.+.+..
T Consensus 528 l~~a~~~-~~~p~liev~i~~~~ 549 (574)
T PRK06882 528 LTQAFSI-KDKLVFVDVNVDETE 549 (574)
T ss_pred HHHHHhc-CCCcEEEEEEecCcc
Confidence 9998763 378999999997544
No 122
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.17 E-value=1.1e-10 Score=134.50 Aligned_cols=128 Identities=21% Similarity=0.288 Sum_probs=94.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 412 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y-------------- 471 (561)
T PRK06048 412 GLGTMGYGFPAAIGAKVGKP----DKTVIDIAGDGSFQ--MNSQELATAVQNDIPVIVAILNNGYL-------------- 471 (561)
T ss_pred CccccccHHHHHHHHHHhCC----CCcEEEEEeCchhh--ccHHHHHHHHHcCCCeEEEEEECCcc--------------
Confidence 45899999999999999864 88999999999999 55677999999999999999999742
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
+.+|..-+... + +.+. .++ -.+++..++++||+++..+ ++.++|.+
T Consensus 472 ----------------~~i~~~~~~~~---~----------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~t~~el~~ 519 (561)
T PRK06048 472 ----------------GMVRQWQELFY---D----------KRYSHTCIKGSVDFVKLAEAYGALGLRV---EKPSEVRP 519 (561)
T ss_pred ----------------HHHHHHHHHHc---C----------CcccccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 11111100000 0 0000 011 1356778899999998755 68999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+|+++.+ .++|++|++.+.+..
T Consensus 520 al~~a~~--~~~p~liev~~~~~~ 541 (561)
T PRK06048 520 AIEEAVA--SDRPVVIDFIVECEE 541 (561)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999976 589999999997533
No 123
>PRK06154 hypothetical protein; Provisional
Probab=99.17 E-value=6.3e-11 Score=136.62 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=94.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+..
T Consensus 429 ~~gsmG~glpaaiGa~la~p----~r~Vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~yg~------------ 490 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLARP----DALVINLWGDAAFG--MTGMDFETAVRERIPILTILLNNFSMGG------------ 490 (565)
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECCccce------------
Confidence 45889999999999999864 89999999999998 6667899999999999999999984321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+.. ....+ + . .....+ ..+++..+.++||.++..+ ++.++|.++|
T Consensus 491 --~~~-~~~~~-------------------~-------~--~~~~~~-~~~df~~lA~a~G~~g~~V---~~~~el~~al 535 (565)
T PRK06154 491 --YDK-VMPVS-------------------T-------T--KYRATD-ISGDYAAIARALGGYGERV---EDPEMLVPAL 535 (565)
T ss_pred --eeh-hhhhh-------------------c-------C--cccccC-CCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 000 00000 0 0 000011 1356778899999998755 6899999999
Q ss_pred HHhhhc-CCCCcEEEEEEeccCC
Q 005820 345 EEVKNT-KTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~-~~~~P~lI~v~T~kg~ 366 (676)
+++.+. ..++|++|++.+.+..
T Consensus 536 ~~a~~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 536 LRALRKVKEGTPALLEVITSEET 558 (565)
T ss_pred HHHHhhccCCCeEEEEEEeChHH
Confidence 998642 1478999999986543
No 124
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.16 E-value=1.2e-10 Score=134.52 Aligned_cols=128 Identities=17% Similarity=0.265 Sum_probs=93.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+|+|. ++++|||++|||+++ +...+|++|.++++|+++||.||+.+
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~--m~~~eL~ta~r~~lpi~ivV~NN~~~-------------- 481 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQ--MTLQELSVIKELSLPVKVVILNNEAL-------------- 481 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHh--hhHHHHHHHHHhCCCeEEEEEECchH--------------
Confidence 4589999999999999996 488999999999999 44556999999999999999999741
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
+.+|..-.... + +.+. .++ -.+++..++++||+++..+ ++.++|.+
T Consensus 482 ----------------~~i~~~~~~~~---~----------~~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~~~el~~ 529 (571)
T PRK07710 482 ----------------GMVRQWQEEFY---N----------QRYSHSLLSCQPDFVKLAEAYGIKGVRI---DDELEAKE 529 (571)
T ss_pred ----------------HHHHHHHHHHh---C----------CcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 12221100000 0 0000 011 1245677899999998855 67999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++++.+ .++|++|+|.|....
T Consensus 530 al~~a~~--~~~p~lieV~vd~~~ 551 (571)
T PRK07710 530 QLQHAIE--LQEPVVIDCRVLQSE 551 (571)
T ss_pred HHHHHHh--CCCCEEEEEEecCcc
Confidence 9999986 579999999997544
No 125
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.16 E-value=1.3e-10 Score=134.15 Aligned_cols=128 Identities=18% Similarity=0.211 Sum_probs=93.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++. ...+|.+|..+++|+++||.||+.+.
T Consensus 412 ~~g~mG~~l~~aiGa~la~p----~~~vv~i~GDG~f~m--~~~eL~Ta~~~~lpvi~vV~NN~~~~------------- 472 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAVP----DKVVINFTGDGSILM--NIQELMTAVEYKIPVINIILNNNFLG------------- 472 (563)
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEecCchhcc--cHHHHHHHHHhCCCeEEEEEECCcch-------------
Confidence 45899999999999999964 788999999999995 44569999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+|..-... .+. .+. .++ ..+++..++++||+.+..+ ++.++|.+
T Consensus 473 -----------------~i~~~~~~~---~~~----------~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~ 519 (563)
T PRK08527 473 -----------------MVRQWQTFF---YEE----------RYSETDLSTQPDFVKLAESFGGIGFRV---TTKEEFDK 519 (563)
T ss_pred -----------------hHHHHHHhh---cCC----------ceeeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 111000000 000 000 011 1245667899999998754 68999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+|+++.+ .++|++|||.+.+..
T Consensus 520 al~~a~~--~~~p~lieV~v~~~~ 541 (563)
T PRK08527 520 ALKEALE--SDKVALIDVKIDRFE 541 (563)
T ss_pred HHHHHHh--CCCCEEEEEEECCcc
Confidence 9999876 579999999998644
No 126
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.16 E-value=1.2e-10 Score=133.34 Aligned_cols=125 Identities=21% Similarity=0.280 Sum_probs=89.8
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
.|++|+++|.|+|+++|.+ +++|||++|||+++.+ .+++++|.++++|+++||.||+.+.+
T Consensus 406 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~------------- 466 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGA------------- 466 (530)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHH-------------
Confidence 4889999999999999864 7899999999999965 58899999999999999988873211
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 345 (676)
++...+... .+. . ...++-..++..++++||+.+.. + ++.+++.++++
T Consensus 467 -----------------~~~~~~~~~--~~~-~---------~~~~~~~~d~~~~a~~~G~~~~~-v--~~~~~l~~al~ 514 (530)
T PRK07092 467 -----------------LRWFAPVFG--VRD-V---------PGLDLPGLDFVALARGYGCEAVR-V--SDAAELADALA 514 (530)
T ss_pred -----------------HHHHHHhhC--CCC-C---------CCCCCCCCCHHHHHHHCCCeEEE-e--CCHHHHHHHHH
Confidence 110000000 000 0 00011123456779999999874 4 47899999999
Q ss_pred HhhhcCCCCcEEEEEEec
Q 005820 346 EVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 346 ~a~~~~~~~P~lI~v~T~ 363 (676)
++.+ .++|++|++.|.
T Consensus 515 ~a~~--~~~p~liev~~d 530 (530)
T PRK07092 515 RALA--ADGPVLVEVEVA 530 (530)
T ss_pred HHHh--CCCCEEEEEEcC
Confidence 9876 589999999873
No 127
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.16 E-value=1.4e-10 Score=134.25 Aligned_cols=131 Identities=16% Similarity=0.193 Sum_probs=95.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...++.+|.++++|+++||.||+.+.
T Consensus 428 ~~g~mG~~lpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Tavr~~lpvi~vV~NN~~yg------------- 488 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAAP----DRPVVAYAGDGAWG--MSMNEIMTAVRHDIPVTAVVFRNRQWG------------- 488 (579)
T ss_pred ccccccchHHHHHhhhhhCC----CCcEEEEEcchHHh--ccHHHHHHHHHhCCCeEEEEEECcchH-------------
Confidence 45899999999999999864 88999999999999 555779999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhccC-CCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMIS-GSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~~~-~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+|..-... .+ +.+. .++-. +++..++++||.++..+ ++.++|.+
T Consensus 489 -----------------~i~~~~~~~---~~----------~~~~~~~~~~~~d~~~lA~a~G~~g~~v---~~~~el~~ 535 (579)
T TIGR03457 489 -----------------AEKKNQVDF---YN----------NRFVGTELESELSFAGIADAMGAKGVVV---DKPEDVGP 535 (579)
T ss_pred -----------------HHHHHHHHh---hC----------CcceeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 111110000 00 0000 01112 36778899999998754 78999999
Q ss_pred HHHHhhhc-CCCCcEEEEEEeccCCC
Q 005820 343 ILEEVKNT-KTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 343 al~~a~~~-~~~~P~lI~v~T~kg~G 367 (676)
+|+++.+. ..++|++|+|.+.+..+
T Consensus 536 al~~a~~~~~~~~p~lieV~v~~~~~ 561 (579)
T TIGR03457 536 ALKKAIAAQAEGKTTVIEIVCTRELG 561 (579)
T ss_pred HHHHHHhhCCCCCcEEEEEEeCCCcC
Confidence 99988642 24789999999987664
No 128
>PRK07586 hypothetical protein; Validated
Probab=99.16 E-value=1.2e-10 Score=133.02 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=90.7
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
|++|+++|+|+|+++|++ +++|||++|||+++ +...+|.+|.++++|+++||.||+.+
T Consensus 385 g~mG~~lpaaiGa~lA~p----~r~Vv~i~GDGsf~--m~~~EL~Ta~~~~lpv~ivV~NN~~y---------------- 442 (514)
T PRK07586 385 GAIGQGLPLATGAAVACP----DRKVLALQGDGSAM--YTIQALWTQARENLDVTTVIFANRAY---------------- 442 (514)
T ss_pred cccccHHHHHHHHHHhCC----CCeEEEEEechHHH--hHHHHHHHHHHcCCCCEEEEEeCchh----------------
Confidence 889999999999999964 89999999999999 66788999999999999888888742
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhh-cccCCchHHHHHHHHHHHhhcc--CCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVT-KQIGGPMHELAAKVDEYARGMI--SGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~-~~~g~~~~~~~~k~~~~~~~~~--~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+.+|..-.... ...+... ..+ .+.. ..++..++++||+++..+ ++.++|.++
T Consensus 443 --------------~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~d~~~lA~a~G~~~~~V---~~~~el~~a 497 (514)
T PRK07586 443 --------------AILRGELARVGAGNPGPRA-------LDM-LDLDDPDLDWVALAEGMGVPARRV---TTAEEFADA 497 (514)
T ss_pred --------------HHHHHHHHHhcCCCCCccc-------ccc-ccCCCCCCCHHHHHHHCCCcEEEe---CCHHHHHHH
Confidence 11221100000 0000000 000 0111 246778899999998754 679999999
Q ss_pred HHHhhhcCCCCcEEEEEEe
Q 005820 344 LEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T 362 (676)
++++.+ .++|++|++.+
T Consensus 498 l~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 498 LAAALA--EPGPHLIEAVV 514 (514)
T ss_pred HHHHHc--CCCCEEEEEEC
Confidence 999986 57999999863
No 129
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.15 E-value=1.2e-10 Score=135.09 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=93.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccch-HHHHHHhhhc-----CCCEEEEEECCCCCccCccCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQA-YEAMNNAGYL-----DSDMIVILNDNKQVSLPTATLD 258 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~-~EAln~A~~~-----~~~li~Iv~dN~~~s~~t~~~~ 258 (676)
+.|++|+++|+|+|+++|.+ +++||||+|||+++ |. ...|.+|.++ ++|+++||.||+.+.
T Consensus 413 ~~g~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~------- 479 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAHP----DRPVIALVGDGAMQ--MNGMAELITVAKYWRQWSDPRLIVLVLNNRDLN------- 479 (597)
T ss_pred ccccccchHHHHHHHHHhCC----CCcEEEEEcchhHh--ccchHHHHHHHHHhhcccCCCEEEEEEeCCcch-------
Confidence 45899999999999999964 89999999999998 55 3669999887 899999999997421
Q ss_pred CCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHH
Q 005820 259 GPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVD 338 (676)
Q Consensus 259 g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~ 338 (676)
.+|..-... .+..... ...++-..++..++++||+.+..+ .+.+
T Consensus 480 -----------------------~i~~~q~~~---~~~~~~~-------~~~~~~~~d~~~lA~a~G~~~~~v---~~~~ 523 (597)
T PRK08273 480 -----------------------QVTWEQRVM---EGDPKFE-------ASQDLPDVPYARFAELLGLKGIRV---DDPE 523 (597)
T ss_pred -----------------------HHHHHHHHh---cCCCccc-------ccccCCCCCHHHHHHHCCCEEEEE---CCHH
Confidence 111110000 0000000 000111245677899999998855 6899
Q ss_pred HHHHHHHHhhhcCCCCcEEEEEEeccCC
Q 005820 339 DLVAILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 339 ~l~~al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+|.++|+++.+ .++|++|+|.+.+..
T Consensus 524 eL~~al~~a~~--~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 524 QLGAAWDEALA--ADRPVVLEVKTDPNV 549 (597)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEeCCCC
Confidence 99999999986 589999999997644
No 130
>PRK08617 acetolactate synthase; Reviewed
Probab=99.15 E-value=1.1e-10 Score=134.54 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=94.4
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+++|. ++++|||++|||+++ +...+|.+|..+++|+++||.||+.+..
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~~~------------ 473 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFL--FSAMELETAVRLKLNIVHIIWNDGHYNM------------ 473 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHh--hhHHHHHHHHHhCCCeEEEEEECCccch------------
Confidence 4588999999999999986 488999999999999 5667899999999999988888873211
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHH-HHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE-YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~-~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+|.. +. ..... ...++-.+++..++++||.++..+ ++.++|.++
T Consensus 474 ------------------~~~~------------~~--~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~a 518 (552)
T PRK08617 474 ------------------VEFQ------------EE--MKYGRSSGVDFGPVDFVKYAESFGAKGLRV---TSPDELEPV 518 (552)
T ss_pred ------------------HHHH------------HH--hhcCCcccCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 1100 00 00000 001111356678899999998755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
|+++.+ .++|++|++.+.+...
T Consensus 519 l~~a~~--~~~p~liev~~~~~~~ 540 (552)
T PRK08617 519 LREALA--TDGPVVIDIPVDYSDN 540 (552)
T ss_pred HHHHHh--CCCcEEEEEEeccccc
Confidence 999875 5799999999976543
No 131
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.15 E-value=1.3e-10 Score=134.24 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=93.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++||+++|||+++ +...+|.+|..+++|+++||.||+.+.
T Consensus 406 ~~gsmG~glpaAiGa~la~p----~r~Vv~i~GDGsf~--m~~~eL~Tavr~~lpi~~VV~NN~~yg------------- 466 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNYP----DRQVFNLAGDGAFS--MTMQDLLTQVQYHLPVINIVFSNCTYG------------- 466 (575)
T ss_pred CcchhhchHHHHHHHHHhCC----CCcEEEEEcccHHH--hhHHHHHHHHHhCCCeEEEEEeCCccH-------------
Confidence 45899999999999998864 88999999999999 556779999999999999988887421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.++..-+.. +. +....++-.+++..++++||+++..+ .+.++|.+++
T Consensus 467 -----------------~i~~~~~~~----~~---------~~~~~~~~~~df~~iA~a~G~~~~~v---~~~~el~~al 513 (575)
T TIGR02720 467 -----------------FIKDEQEDT----NQ---------PLIGVDFNDADFAKIAEGVGAVGFRV---NKIEQLPAVF 513 (575)
T ss_pred -----------------HHHHHHHHh----CC---------CcccccCCCCCHHHHHHHCCCEEEEe---CCHHHHHHHH
Confidence 111100000 00 00001122356778899999998744 6789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+...++|++|++.+.+.
T Consensus 514 ~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 514 EQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhhCCCCcEEEEEEeCCC
Confidence 998721158999999999764
No 132
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.15 E-value=1.2e-10 Score=135.55 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=94.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|.|+|+++|.+ +++|+|++|||+++ +...+|.+|.++++|+++||.||+.+.
T Consensus 445 ~~G~mG~glpaaiGa~la~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~ivV~NN~~~g------------- 505 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGRP----DKEVWAIDGDGCFQ--MTNQELATCAIEGIPIKVALINNGNLG------------- 505 (612)
T ss_pred CcccccchhhhHHhhhccCC----CCcEEEEEcchhhh--ccHHHHHHHHHcCCCeEEEEEECCchH-------------
Confidence 55899999999999999864 88999999999999 666789999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+|..-... .+...... .+. .+.-.+++..++++||+++..+ ++.++|.++
T Consensus 506 -----------------~i~~~q~~~---~~~~~~~~-----~~~~~~~~~~d~~~lA~a~G~~~~~V---~~~~eL~~a 557 (612)
T PRK07789 506 -----------------MVRQWQTLF---YEERYSNT-----DLHTHSHRIPDFVKLAEAYGCVGLRC---EREEDVDAV 557 (612)
T ss_pred -----------------HHHHHHHHh---hCCCccee-----ecCcCCCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 111110000 00000000 000 0001246778899999998855 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg 365 (676)
|+++.+. .++|++|+|.+.+.
T Consensus 558 l~~a~~~-~~~p~lIev~i~~~ 578 (612)
T PRK07789 558 IEKARAI-NDRPVVIDFVVGKD 578 (612)
T ss_pred HHHHHhc-CCCcEEEEEEECCc
Confidence 9998763 27999999999753
No 133
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.14 E-value=1.4e-10 Score=133.95 Aligned_cols=129 Identities=26% Similarity=0.336 Sum_probs=92.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++.. ..++.+|.++++|+++||.||+.+.+
T Consensus 417 ~~g~mG~~lpaaiGa~la~~----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~~~g~------------ 478 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALANP----ERKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNEALGL------------ 478 (564)
T ss_pred CcccccchhHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcccc------------
Confidence 45899999999999999964 8899999999999954 45599999999999999999974221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
+ ...++.+ | +.. .+..++ -..++..++++||++++.+ .+.++|.++
T Consensus 479 --~-~~~q~~~----~--------------~~~---------~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 525 (564)
T PRK08155 479 --V-HQQQSLF----Y--------------GQR---------VFAATYPGKINFMQIAAGFGLETCDL---NNEADPQAA 525 (564)
T ss_pred --c-HHHHHHh----c--------------CCC---------eeeccCCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 0 0000000 0 000 000011 1245667799999998754 579999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
|+++.+ .++|++|+|.+....
T Consensus 526 l~~a~~--~~~p~lIeV~~~~~~ 546 (564)
T PRK08155 526 LQEAIN--RPGPALIHVRIDAEE 546 (564)
T ss_pred HHHHHh--CCCCEEEEEEeCCCc
Confidence 999886 479999999997533
No 134
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.14 E-value=1.4e-10 Score=133.88 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=91.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +....|.+|.++++|+++||.||+.+.
T Consensus 416 ~~g~mG~glpaaiGa~lA~p----~~~Vv~i~GDG~f~--m~~~eL~Ta~~~~l~i~~vV~NN~~y~------------- 476 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIANP----DKEVILFVGDGGFQ--MTNQELAILNIYKVPIKVVMLNNHSLG------------- 476 (566)
T ss_pred ccccccchhhHhheeheecC----CCcEEEEEcchhhh--ccHHHHHHHHHhCCCeEEEEEeCCCch-------------
Confidence 45899999999999998864 88999999999999 666789999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+|..-... .+. +.....+ -.+++..++++||+++..+ ++.++|.++
T Consensus 477 -----------------~i~~~q~~~---~~~---------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 524 (566)
T PRK07282 477 -----------------MVRQWQESF---YEG---------RTSESVFDTLPDFQLMAQAYGIKHYKF---DNPETLAQD 524 (566)
T ss_pred -----------------HHHHHHHHH---hCC---------CcccccCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHH
Confidence 111110000 000 0000011 1256778899999998755 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg 365 (676)
++.+. .++|++|+|.+.+.
T Consensus 525 l~~~~---~~~p~lIeV~v~~~ 543 (566)
T PRK07282 525 LEVIT---EDVPMLIEVDISRK 543 (566)
T ss_pred HHHhc---CCCCEEEEEEeCCc
Confidence 97542 48999999999753
No 135
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.14 E-value=1.5e-10 Score=134.19 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=94.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +...++.+|.++++|+++||.||+.+.
T Consensus 417 ~~G~mG~glpaAiGa~la~p----~r~Vv~i~GDG~f~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g------------- 477 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAADP----DRNVVALSGDYDFQ--FLIEELAVGAQFNLPYIHVLVNNAYLG------------- 477 (591)
T ss_pred ccccccchhhhHHhhhhhCC----CCcEEEEEccchhh--cCHHHHHHHHHhCCCeEEEEEeCCchh-------------
Confidence 45899999999999999864 88999999999999 556779999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.+ +.++.. |.. ... .+...+.+. ..-.+.-.+++..++++||.++..+ ++.++|.++|
T Consensus 478 -~i-~~~~~~-----~~~------~~~--~~~~~~~~~----~~~~~~~~~df~~lA~a~G~~~~~v---~~~~eL~~al 535 (591)
T PRK11269 478 -LI-RQAQRA-----FDM------DYC--VQLAFENIN----SPELNGYGVDHVKVAEGLGCKAIRV---FKPEDIAPAL 535 (591)
T ss_pred -HH-HHHHHH-----hcc------Ccc--ceeeccccc----cccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHH
Confidence 11 000000 000 000 000000000 0000001256778899999998855 7899999999
Q ss_pred HHhhhc--CCCCcEEEEEEeccCC
Q 005820 345 EEVKNT--KTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~--~~~~P~lI~v~T~kg~ 366 (676)
+++.+. +.++|+||||.+.+..
T Consensus 536 ~~a~~~~~~~~gp~lieV~v~~~~ 559 (591)
T PRK11269 536 EQAKALMAEFRVPVVVEVILERVT 559 (591)
T ss_pred HHHHhhcccCCCcEEEEEEecccc
Confidence 998631 2479999999997543
No 136
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.12 E-value=2.1e-10 Score=132.28 Aligned_cols=128 Identities=22% Similarity=0.344 Sum_probs=92.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. ++++|||++|||+++. ...+|.+|.++++|+++||.||+.+.
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~--~~~eL~ta~~~~l~~~~vv~NN~~~~------------- 470 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQM--NLQELSTAVQYDIPVKILILNNRYLG------------- 470 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhc--cHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 4588999999999999885 4789999999999995 44579999999999999999998421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhcc-CCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~~-~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.++..-+.. .+ ..+. .... .+++..++++||++++.+ ++.++|.+
T Consensus 471 -----------------~~~~~q~~~---~~----------~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~ 517 (558)
T TIGR00118 471 -----------------MVRQWQELF---YE----------ERYSHTHMGSLPDFVKLAEAYGIKGIRI---EKPEELDE 517 (558)
T ss_pred -----------------HHHHHHHHh---cC----------CceeeccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 111000000 00 0000 0011 245677899999998754 56899999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++++.+ .++|++||+.+.+..
T Consensus 518 al~~a~~--~~~p~liev~~~~~~ 539 (558)
T TIGR00118 518 KLKEALS--SNEPVLLDVVVDKPE 539 (558)
T ss_pred HHHHHHh--CCCCEEEEEEeCCcc
Confidence 9999876 479999999997643
No 137
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.10 E-value=3.2e-10 Score=131.42 Aligned_cols=126 Identities=19% Similarity=0.309 Sum_probs=92.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ +..-++.+|.++++|+++||.||+.+.
T Consensus 417 ~~gsmG~~lpaaiGa~la~p----~~~Vv~i~GDGsf~--m~~~eL~Ta~~~~lpv~~vV~NN~~~g------------- 477 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAKP----DANVIAITGDGGFL--MNSQELATIAEYDIPVVICIFDNRTLG------------- 477 (586)
T ss_pred CccccccchhHHHhhhhhcC----CCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCCchH-------------
Confidence 45899999999999999864 78999999999999 555679999999999999999997421
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+ ...++..- +. .+. .++ -..++..++++||+++..+ ++.++|.+
T Consensus 478 -~~-~~~~~~~~------------------~~----------~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 524 (586)
T PRK06276 478 -MV-YQWQNLYY------------------GK----------RQSEVHLGETPDFVKLAESYGVKADRV---EKPDEIKE 524 (586)
T ss_pred -HH-HHHHHHHh------------------CC----------CcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 01 00000000 00 000 011 1245677899999998755 78999999
Q ss_pred HHHHhhhcCCCCcEEEEEEecc
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~k 364 (676)
+|+++.+ .++|++|+|.+.+
T Consensus 525 al~~a~~--~~~p~lIeV~i~~ 544 (586)
T PRK06276 525 ALKEAIK--SGEPYLLDIIIDP 544 (586)
T ss_pred HHHHHHh--CCCCEEEEEEecc
Confidence 9999876 5799999999975
No 138
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.1e-08 Score=113.79 Aligned_cols=262 Identities=16% Similarity=0.141 Sum_probs=166.9
Q ss_pred HHHHHHHcCCCEEEEeccccCccc------hh----------hhhhhCC----CceeeccccHHHHHHHHHHHHhcC--C
Q 005820 408 ALIAEAEVDKDVVAIHAAMGGGTG------LN----------LFLRRFP----TRCFDVGIAEQHAVTFAAGLACEG--L 465 (676)
Q Consensus 408 aL~~~~~~d~~iv~i~aD~~gs~~------l~----------~f~~~~p----~R~id~GIaE~~~v~~A~GlA~~G--~ 465 (676)
++--+.++.-.|.+-+.|+..+|- |. .+..-.| =-+-|..++|-+.+|+-.|++|.- .
T Consensus 658 AFgsLl~EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNa 737 (1017)
T KOG0450|consen 658 AFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLGFELGYSMASPNA 737 (1017)
T ss_pred HHHHHHhcCceEEeecccccccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheecceecccccCCCc
Confidence 344566777788888999886651 10 0111113 245699999999999999999984 6
Q ss_pred eeEEee-chhHH---HHHHHHHHHhh-h--cCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhc-------C--------
Q 005820 466 KPFCAI-YSSFM---QRAYDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMAC-------L-------- 523 (676)
Q Consensus 466 ~p~~~t-~~~Fl---~ra~dqi~~~~-a--~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~-------i-------- 523 (676)
..+++. |.+|. |..+||.+..- + +...-+++...| |+-| .||-|+...--.|+.. +
T Consensus 738 LVlWEAQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPH-GyeG-~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~ 815 (1017)
T KOG0450|consen 738 LVLWEAQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPH-GYEG-MGPEHSSARPERFLQMSNDDPDVFPDEEEFLQ 815 (1017)
T ss_pred eEEeehhhccccccchhhHHhHhccchhhhhhhcCeEEEccC-CcCC-CCcccccccHHHHHHhccCCCccCCcccHHHH
Confidence 777776 88885 88899976321 1 234556666666 5555 4899986433233321 1
Q ss_pred -----CCCEEEecCCHHHHHHHHHHHHH-hCCCCeEEEecCCCCccc----cCCCCCCCCccc-----cCceeEeecCCc
Q 005820 524 -----PNMVVMAPSDEAELFHMVATAAA-IDDRPSCFRYPRGNGIGV----ELPPGNKGIPLE-----VGKGRILIEGER 588 (676)
Q Consensus 524 -----P~l~V~~Psd~~E~~~~~~~al~-~~~~P~~ir~~r~~~~~~----~~p~~~~~~~~~-----~gk~~vl~eG~d 588 (676)
-||+|+-+++|..++++++.-+. ..++|.+|..|+..+..- .+.+..++..+. -|+.-.-.|+-+
T Consensus 816 ~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq~vi~e~g~~~~~pe~vk 895 (1017)
T KOG0450|consen 816 RQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQRVIPEDGKAAQNPENVK 895 (1017)
T ss_pred HHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCceeccccccccCChhhce
Confidence 27899999999999999997664 456899999998653211 111111111111 122211123446
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC---CEEEEEcCCCCCCHHHHHHHHHHHcCC
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEGSIGGFGSHVVQFLAQDGL 665 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~---~~vIvvEe~~~gG~gs~v~~~l~~~~~ 665 (676)
-.|+|+|-.....-++-+.... --+|.+..+-.|.|||.+.+++-+++. +.+..-||+-.-|-.++|.-.+...--
T Consensus 896 rlv~csGkVyydL~k~Rk~~~~-~~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~~NmG~w~Yv~PRl~T~l~ 974 (1017)
T KOG0450|consen 896 RLVFCSGKVYYDLTKERKEVGL-EGDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEHKNMGAWDYVEPRLRTALK 974 (1017)
T ss_pred EEEEecceEehhhhHHHHhcCc-ccceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhhcccCchhhcchHHHHHHH
Confidence 7789999887766555544321 236888999999999999998876654 678888999754445566555443321
Q ss_pred -CCCcccc
Q 005820 666 -LDGTVKV 672 (676)
Q Consensus 666 -ld~~~~~ 672 (676)
++.++|+
T Consensus 975 ~~~r~v~Y 982 (1017)
T KOG0450|consen 975 RLARPVKY 982 (1017)
T ss_pred hhCCccee
Confidence 3445544
No 139
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.10 E-value=2.1e-10 Score=132.41 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=91.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. ++++|||++|||+++.+..-+++++|.++++|+++||.||+.+..-.
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~---------- 493 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVK---------- 493 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccch----------
Confidence 4689999999999999884 58999999999999987654579999999999999999997422100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHH-Hhhc-cCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY-ARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~-~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
..+...-...+.. . .+.. ...+ -..++..++++||+.+..+ ++.++|.+
T Consensus 494 -----~~~~~~~~~~~~~--------------~-------~~~~~~~~~~~~~d~~~la~a~G~~~~~v---~~~~el~~ 544 (569)
T PRK08327 494 -----EAVLEVYPEGYAA--------------R-------KGTFPGTDFDPRPDFAKIAEAFGGYGERV---EDPEELKG 544 (569)
T ss_pred -----hHHhhhCcccccc--------------c-------ccccccccCCCCCCHHHHHHhCCCCceEe---CCHHHHHH
Confidence 0000000000000 0 0000 0001 1235667799999987744 58999999
Q ss_pred HHHHhhhc--CCCCcEEEEEEec
Q 005820 343 ILEEVKNT--KTTGPVLIHVVTE 363 (676)
Q Consensus 343 al~~a~~~--~~~~P~lI~v~T~ 363 (676)
+++++.+. +.++|++||+.+.
T Consensus 545 al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 545 ALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHhcCCCcEEEEEEcc
Confidence 99887642 1268999999864
No 140
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.09 E-value=9.3e-11 Score=134.57 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=90.9
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. ++++|||++|||+++ |...+|.+|..+++|+++||.||+.+..-...+ +..
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~--m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~-~~~--- 471 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAIH-GAE--- 471 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHH--hHHHHHHHHHHcCCCCEEEEEeCCceEEEEeec-CCC---
Confidence 4589999999999999986 489999999999999 777889999999999999998887432100000 000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCce----eeccCCCCCHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY----YIGPVDGHNVDDL 340 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~----~~~~vdGhd~~~l 340 (676)
..| .++-.+++..+.++||.. +..+ ++.++|
T Consensus 472 -------------~~~-----------------------------~~~~~~df~~la~a~G~~~~~~~~~v---~~~~el 506 (539)
T TIGR03393 472 -------------QRY-----------------------------NDIALWNWTHLPQALSLDPQSECWRV---SEAEQL 506 (539)
T ss_pred -------------CCc-----------------------------CcCCCCCHHHHHHHcCCCCccceEEe---ccHHHH
Confidence 000 011124566778999974 4534 689999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEecc
Q 005820 341 VAILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 341 ~~al~~a~~~~~~~P~lI~v~T~k 364 (676)
.++++++.+ .++|++|++.+.+
T Consensus 507 ~~al~~a~~--~~~p~liev~i~~ 528 (539)
T TIGR03393 507 ADVLEKVAA--HERLSLIEVVLPK 528 (539)
T ss_pred HHHHHHHhc--cCCeEEEEEEcCc
Confidence 999999986 5899999999864
No 141
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.08 E-value=8e-10 Score=127.71 Aligned_cols=128 Identities=20% Similarity=0.175 Sum_probs=93.8
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. +++|||++|||+++ +...+|.+|.++++|+++||.||+.+. ..
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~--m~~~EL~Ta~r~~lpi~~vV~NN~~~~-~~---------- 483 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFG--FSGMEVETICRYNLPVTVVIFNNGGIY-RG---------- 483 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCcccc--ccHHHHHHHHHcCCCEEEEEEeChhHH-HH----------
Confidence 4589999999999999983 78899999999999 666779999999999999999997310 00
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
. ++.. + . +. +....++ -.+++..++++||+.+..+ .+.++|.++
T Consensus 484 --~----~~~~----~---------~----~~---------~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~a 528 (569)
T PRK09259 484 --D----DVNL----S---------G----AG---------DPSPTVLVHHARYDKMMEAFGGVGYNV---TTPDELRHA 528 (569)
T ss_pred --H----HHHh----h---------c----CC---------CccccccCCCCCHHHHHHHCCCeEEEE---CCHHHHHHH
Confidence 0 0000 0 0 00 0000011 1356778899999998755 689999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
++++.+ .++|++|+|.+.+..+
T Consensus 529 l~~a~~--~~~p~lIev~id~~~~ 550 (569)
T PRK09259 529 LTEAIA--SGKPTLINVVIDPAAG 550 (569)
T ss_pred HHHHHh--CCCCEEEEEEECCCCC
Confidence 999876 5899999999987554
No 142
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.07 E-value=6.3e-10 Score=129.04 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=93.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++.. ..++.+|.++++|+++||.||+.+.
T Consensus 433 ~~g~mG~glp~aiGa~la~p----~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~------------- 493 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIACP----DRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWG------------- 493 (588)
T ss_pred cccccccHHHHHHHHHHhCC----CCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhH-------------
Confidence 56899999999999999864 8899999999999955 4568899999999999998887321
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH-hhcc-CCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA-RGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~-~~~~-~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.++..-... .+ +.+. .++- ..++..+.++||.++..+ ++.++|.+
T Consensus 494 -----------------~~~~~~~~~---~~----------~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~ 540 (588)
T PRK07525 494 -----------------AEKKNQVDF---YN----------NRFVGTELDNNVSYAGIAEAMGAEGVVV---DTQEELGP 540 (588)
T ss_pred -----------------HHHHHHHHH---hC----------CCcccccCCCCCCHHHHHHHCCCeEEEE---CCHHHHHH
Confidence 111100000 00 0000 0111 146677899999998754 68999999
Q ss_pred HHHHhhhcC-CCCcEEEEEEeccCCC
Q 005820 343 ILEEVKNTK-TTGPVLIHVVTEKGRG 367 (676)
Q Consensus 343 al~~a~~~~-~~~P~lI~v~T~kg~G 367 (676)
+++++.+.. .++|++|+|.+.+..|
T Consensus 541 al~~a~~~~~~~~p~lIev~~~~~~~ 566 (588)
T PRK07525 541 ALKRAIDAQNEGKTTVIEIMCNQELG 566 (588)
T ss_pred HHHHHHhcCCCCCcEEEEEEeccccC
Confidence 999876531 3689999999986654
No 143
>PLN02573 pyruvate decarboxylase
Probab=99.06 E-value=4.4e-10 Score=129.96 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=91.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|.+ +++|||++|||+++ |...+|.+|.++++|+++||.||+.+.+.....
T Consensus 426 ~~gsmG~glpaaiGa~lA~p----~r~vv~i~GDG~f~--m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~------- 492 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAAP----DKRVIACIGDGSFQ--VTAQDVSTMIRCGQKSIIFLINNGGYTIEVEIH------- 492 (578)
T ss_pred chhhhhhhhhHHHHHHHhCC----CCceEEEEeccHHH--hHHHHHHHHHHcCCCCEEEEEeCCceeEEEeec-------
Confidence 56899999999999999974 88999999999999 666789999999999999999998432100000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcC-----ceeeccCCCCCHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELG-----LYYIGPVDGHNVDD 339 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G-----~~~~~~vdGhd~~~ 339 (676)
...| .+.-.+++..++++|| +++..+ .+.++
T Consensus 493 ------------~~~~-----------------------------~~~~~~d~~~lA~a~G~~~g~~~~~~V---~~~~e 528 (578)
T PLN02573 493 ------------DGPY-----------------------------NVIKNWNYTGLVDAIHNGEGKCWTAKV---RTEEE 528 (578)
T ss_pred ------------ccCc-----------------------------cccCCCCHHHHHHHhcCcCCceeEEEe---cCHHH
Confidence 0000 0011235566788885 776644 57999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEecc
Q 005820 340 LVAILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 340 l~~al~~a~~~~~~~P~lI~v~T~k 364 (676)
|.++|+++.+...++|++|+|.+.+
T Consensus 529 L~~al~~a~~~~~~~p~lieV~v~~ 553 (578)
T PLN02573 529 LIEAIATATGEKKDCLCFIEVIVHK 553 (578)
T ss_pred HHHHHHHHHhhCCCCcEEEEEEcCc
Confidence 9999999874224899999999864
No 144
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.04 E-value=8.8e-10 Score=126.98 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=92.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. +++|||++|||+++ |....|.+|.++++|+++||.||+.+.. +.....
T Consensus 415 ~~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~--m~~~EL~Ta~r~~l~v~~vV~NN~~~~~------~~~~~~ 481 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFG--FSGMEVETICRYNLPVCVVIFNNGGIYR------GDDVNV 481 (554)
T ss_pred CCCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhc--ccHHHHHHHHHcCCCEEEEEEeChhhhh------hhhhhh
Confidence 4589999999999999973 68899999999999 6666799999999999999999973210 000000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhc-cCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGM-ISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~-~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.+. +....++ -.+++..+.++||+++..+ .+.++|.++
T Consensus 482 -----------------------------~~~---------~~~~~~~~~~~df~~la~a~G~~~~~v---~~~~el~~a 520 (554)
T TIGR03254 482 -----------------------------VGA---------DPAPTVLVHGARYDKMMKAFGGVGYNV---TTPDELKAA 520 (554)
T ss_pred -----------------------------cCC---------CCCccccCCCCCHHHHHHHCCCeEEEe---CCHHHHHHH
Confidence 000 0000011 1245677899999988755 789999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
|+++.+ .++|++|+|.+.+..
T Consensus 521 l~~a~~--~~~p~lIev~id~~~ 541 (554)
T TIGR03254 521 LNEALA--SGKPTLINAVIDPSA 541 (554)
T ss_pred HHHHHh--CCCCEEEEEEECCCc
Confidence 999875 579999999987654
No 145
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.04 E-value=8.5e-10 Score=127.49 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=90.5
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
|.|.+|+++|+|+|+++| . +++|||++|||+++.. ..++.+|.++++|+++||.||+.+.+-.....+
T Consensus 423 g~~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~----- 490 (568)
T PRK07449 423 GASGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQP----- 490 (568)
T ss_pred CccchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCC-----
Confidence 457799999999999988 3 7889999999999954 456999999999999999999742210000000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+... | .+.+....-..++..++++||+.+..+ ++.++|.+++
T Consensus 491 ----------~~~~-~------------------------~~~~~~~~~~~df~~lA~a~G~~~~~V---~~~~eL~~al 532 (568)
T PRK07449 491 ----------EEEP-V------------------------FERFFGTPHGVDFAHAAAMYGLEYHRP---ETWAELEEAL 532 (568)
T ss_pred ----------CCcc-h------------------------hhHhhcCCCCCCHHHHHHHcCCCccCC---CCHHHHHHHH
Confidence 0000 0 000001111346678899999988744 7899999999
Q ss_pred HHhhhcCCCCcEEEEEEecc
Q 005820 345 EEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~k 364 (676)
+++.+ .++|++|+|.+.+
T Consensus 533 ~~a~~--~~~p~lIev~id~ 550 (568)
T PRK07449 533 ADALP--TPGLTVIEVKTNR 550 (568)
T ss_pred HHHhc--CCCCEEEEEeCCh
Confidence 99875 5799999999864
No 146
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.03 E-value=8.1e-10 Score=116.82 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=89.0
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcc-cccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
|.+|.++|+|+|+++|.+ +++|||+.|||++ +.| ...+.+|++.+.|+++||.||+.+.... .+..+..+.+
T Consensus 70 g~mG~alpaAiGaklA~p----d~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~-gQ~s~t~~~g 142 (301)
T PRK05778 70 TLHGRAIAFATGAKLANP----DLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTK-GQASPTTPEG 142 (301)
T ss_pred hhhccHHHHHHHHHHHCC----CCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhccc-CcccCCcCCC
Confidence 667889999999999864 8999999999997 344 4579999999999999999998433211 1111111111
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 345 (676)
... .....|. ..-..++..+++++|+.++....-.+.++|.++++
T Consensus 143 ~~~---------------------~~~~~g~--------------~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~ 187 (301)
T PRK05778 143 SKT---------------------KTAPYGN--------------IEPPIDPCALALAAGATFVARSFAGDVKQLVELIK 187 (301)
T ss_pred ccc---------------------ccccCCC--------------cCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHH
Confidence 000 0000000 00013456678999998763323368999999999
Q ss_pred HhhhcCCCCcEEEEEEec
Q 005820 346 EVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 346 ~a~~~~~~~P~lI~v~T~ 363 (676)
++.+ .++|++|+|.+.
T Consensus 188 ~A~~--~~GpalIeV~~~ 203 (301)
T PRK05778 188 KAIS--HKGFAFIDVLSP 203 (301)
T ss_pred HHHh--CCCCEEEEEcCC
Confidence 9886 589999998764
No 147
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.01 E-value=9.5e-10 Score=113.00 Aligned_cols=140 Identities=23% Similarity=0.312 Sum_probs=89.4
Q ss_pred CCCccchhhHHHHHHHHHchh-cCCCCeEEEEEcCCccc-ccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDL-KGRKNNVVAVIGDGAMT-AGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIP 262 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~-~~~~~~vv~viGDGa~~-eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~ 262 (676)
+.|.+|+++++|+|.++|... ..++++|||++|||++. .|+ ..+.++.++++|+++||.||+.+.. +..+.....
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~--~~l~ta~~~~l~i~ivVlNN~~yg~-~~~q~~~~~ 138 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGF--GALSHSLFRGEDITVIVLDNEVYSN-TGGQRSGAT 138 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccH--HHHHHHHHcCCCeEEEEECCccccC-CCCCCCCCC
Confidence 459999999999999988221 12488999999999874 342 3466777889999999999984331 111110000
Q ss_pred CcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 263 PVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 263 ~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
..+.. + .........-.+++..+++++|+.++..+.=.+.++|.+
T Consensus 139 ~~g~~------------~-----------------------~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~ 183 (237)
T cd02018 139 PLGAD------------S-----------------------KMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLK 183 (237)
T ss_pred cCCCc------------c-----------------------cccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHH
Confidence 00000 0 000000011124566779999999875322256899999
Q ss_pred HHHHhhhcCCCCcEEEEEEec
Q 005820 343 ILEEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~ 363 (676)
+|+++.+ +.++|++|++.+.
T Consensus 184 al~~al~-~~~GP~lI~v~i~ 203 (237)
T cd02018 184 VVKEAIS-RTDGPTFIHAYTP 203 (237)
T ss_pred HHHHHHh-cCCCCEEEEEeCC
Confidence 9999874 1478999999964
No 148
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.00 E-value=1e-09 Score=114.72 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=90.7
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
|.+|.++|+|+|+++|. ++++|||++|||++.. .-...+.+|++.+.|+++||.||+.+.. |..+..+..+.|.
T Consensus 60 ~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~-iG~~eL~tA~r~nl~i~~IV~NN~~Yg~-t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKATN----PELTVIAEGGDGDMYA-EGGNHLIHAIRRNPDITVLVHNNQVYGL-TKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEECchHHhh-CcHHHHHHHHHhCcCcEEEEEECHHHhh-hcceecCCCCCCc
Confidence 44788999999998885 4899999999999762 1146799999999999999999973222 1111111111110
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 346 (676)
... +...|. ..-..+...+++++|..++...+-.++++|.+++++
T Consensus 134 ~~~---------------------~~p~g~--------------~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~ 178 (280)
T PRK11869 134 KTP---------------------TQPWGV--------------FEEPFNPIALAIALDASFVARTFSGDIEETKEILKE 178 (280)
T ss_pred ccc---------------------cCCCCc--------------cCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHH
Confidence 000 000000 000134566789999998875445789999999999
Q ss_pred hhhcCCCCcEEEEEEec
Q 005820 347 VKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T~ 363 (676)
+.+ .++|++|++.+.
T Consensus 179 Al~--~~Gp~lIeV~~p 193 (280)
T PRK11869 179 AIK--HKGLAIVDIFQP 193 (280)
T ss_pred HHh--CCCCEEEEEECC
Confidence 987 589999999875
No 149
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.99 E-value=2.3e-09 Score=112.10 Aligned_cols=134 Identities=21% Similarity=0.265 Sum_probs=92.1
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDG-a~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
.|.+|.++|+|+|+++|.+ +.+||+++||| ++..| ...|.+|.+.+.|+++||.||+.+.. |..+..+..+.
T Consensus 58 ~~~~G~alp~A~GaklA~P----d~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygm-tggQ~s~~t~~ 130 (279)
T PRK11866 58 HGIHGRVLPIATGVKWANP----KLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGL-TTGQASPTTPR 130 (279)
T ss_pred ccccccHHHHHHHHHHHCC----CCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhh-hcccccCCCCC
Confidence 4667889999999999954 89999999999 68855 45799999999999999999973222 21111111111
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
|.... +...|.... ..+...+++++|..++......+.+++.+++
T Consensus 131 g~~t~---------------------~t~~g~~~~--------------~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l 175 (279)
T PRK11866 131 GVKTK---------------------TTPDGNIEE--------------PFNPIALALAAGATFVARGFSGDVKHLKEII 175 (279)
T ss_pred Cceee---------------------ccCCCCCCC--------------CCCHHHHHHHCCCCEEEEEcCCCHHHHHHHH
Confidence 11100 000000000 0134456899999887666668999999999
Q ss_pred HHhhhcCCCCcEEEEEEec
Q 005820 345 EEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~ 363 (676)
+++.+ .++|++|++.+.
T Consensus 176 ~~Al~--~~Gps~I~v~~p 192 (279)
T PRK11866 176 KEAIK--HKGFSFIDVLSP 192 (279)
T ss_pred HHHHh--CCCCEEEEEeCC
Confidence 99987 589999999864
No 150
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.97 E-value=2.3e-08 Score=121.36 Aligned_cols=245 Identities=18% Similarity=0.163 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHHHHHcCCC--E--EEEeccccCc--cch-hhhhhhC-----CCceeeccccHHHHHHHHHHHH-----
Q 005820 399 QSYTTYFAEALIAEAEVDKD--V--VAIHAAMGGG--TGL-NLFLRRF-----PTRCFDVGIAEQHAVTFAAGLA----- 461 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~--i--v~i~aD~~gs--~~l-~~f~~~~-----p~R~id~GIaE~~~v~~A~GlA----- 461 (676)
.+-.+|+...+.+..+.|.. + -.+-..+.|+ +++ ..|.+.- -+-+|..|++|.-+++++.|.+
T Consensus 20 l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~ 99 (1159)
T PRK13030 20 LTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEAD 99 (1159)
T ss_pred eeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhcccccc
Confidence 34467777777776665532 2 1122223333 233 2333221 1378999999999999999999
Q ss_pred ----hcCCeeEEeechhHHHHHHHHHHHhhhcCCC--C---EEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecC
Q 005820 462 ----CEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL--P---VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPS 532 (676)
Q Consensus 462 ----~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~l--p---V~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Ps 532 (676)
+.|.+.++++-.+.+.++.|.+++. ++... . |++++|..|.. +-|...|-.++...-+|-|+.|+
T Consensus 100 ~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~-n~~G~~~~GG~v~v~gDDpg~~-----SSq~eqdSr~~~~~a~iPvl~Ps 173 (1159)
T PRK13030 100 PERTVDGVFAMWYGKGPGVDRAGDALKHG-NAYGSSPHGGVLVVAGDDHGCV-----SSSMPHQSDFALIAWHMPVLNPA 173 (1159)
T ss_pred CCccccceEEEEecCcCCcccchhHHHHH-HhhcCCCCCcEEEEEecCCCCc-----cCcCHHHHHHHHHHcCCceeCCC
Confidence 7778889999999999999998754 55443 2 55555666642 12222222333334566699999
Q ss_pred CHHHHHHHHHHHHHh---CCCCeEEEecCCC------Cc--c----ccCCCCCCC------Ccccc--------------
Q 005820 533 DEAELFHMVATAAAI---DDRPSCFRYPRGN------GI--G----VELPPGNKG------IPLEV-------------- 577 (676)
Q Consensus 533 d~~E~~~~~~~al~~---~~~P~~ir~~r~~------~~--~----~~~p~~~~~------~~~~~-------------- 577 (676)
|++|+.++..++++. ..-||.++..... +. . ...|..... ..++.
T Consensus 174 ~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~~~~~rl 253 (1159)
T PRK13030 174 NVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEARLAAKL 253 (1159)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHHHHHHHH
Confidence 999999999999873 4559998764211 00 0 011110000 00110
Q ss_pred ------Cc----eeEe--ecCCcEEEEEechhHHHHHHHHHHHHhCC-----CcEEEEEccccCcCcHHHHHHHhccCCE
Q 005820 578 ------GK----GRIL--IEGERVALLGYGTAVQSCLAASALLESNG-----LRLTVADARFCKPLDHALIRSLAKSHEV 640 (676)
Q Consensus 578 ------gk----~~vl--~eG~dv~Iva~Gs~v~~aleAa~~L~~~G-----i~v~VId~~~l~P~d~e~i~~~~~~~~~ 640 (676)
.+ .++. .++.++.||++|.....++||.+.|...+ +.++|+.+...+|||.+.++++++.++.
T Consensus 254 ~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i~~F~~g~d~ 333 (1159)
T PRK13030 254 PAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRLREFADGLEE 333 (1159)
T ss_pred HHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHHHHHHhcCCE
Confidence 00 0111 11357999999999999999999875433 2477888889899999999999999999
Q ss_pred EEEEcCCCC
Q 005820 641 LITVEEGSI 649 (676)
Q Consensus 641 vIvvEe~~~ 649 (676)
|+||||...
T Consensus 334 VlVVEE~~p 342 (1159)
T PRK13030 334 ILVIEEKRP 342 (1159)
T ss_pred EEEEeCCch
Confidence 999999763
No 151
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.96 E-value=2.2e-09 Score=123.12 Aligned_cols=123 Identities=19% Similarity=0.190 Sum_probs=90.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+++|. ++++|+++|||+++ |...+|.+|.++++|+++||.||+.+.+-...
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~--m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~-------- 465 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRVF-------- 465 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHH--hHHHHHHHHHHcCCCcEEEEEECCccceeehh--------
Confidence 3489999999999999995 35678899999999 67778999999999999999999743210000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
++. ..| .++-.+++..++++||.++..+ ++.++|.++|
T Consensus 466 -------~~~---~~~-----------------------------~~~~~~d~~~lA~a~G~~~~~v---~~~~eL~~al 503 (535)
T TIGR03394 466 -------QPE---SAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELAAAL 503 (535)
T ss_pred -------ccC---CCc-----------------------------ccCCCCCHHHHHHHcCCCceEe---CCHHHHHHHH
Confidence 000 000 0111245667799999988755 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg 365 (676)
+++.+. .++|++|++.+.+.
T Consensus 504 ~~a~~~-~~~p~lIev~i~~~ 523 (535)
T TIGR03394 504 DKAFAT-RGRFQLIEAMLPRG 523 (535)
T ss_pred HHHHhc-CCCeEEEEEECCcc
Confidence 988753 35689999998654
No 152
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.95 E-value=2e-09 Score=112.70 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=86.4
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
+.+|.++|+|+|+++|.. +++|||++|||+++. +.-..+.+|+++++|+++||.||+.+.. |..+..+..+.+.
T Consensus 68 ~~~G~alPaAiGaklA~P----dr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGm-t~~Q~~~~t~~g~ 141 (277)
T PRK09628 68 TTHGRAVAYATGIKLANP----DKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGL-TNSQTSPTTPKGM 141 (277)
T ss_pred eccccHHHHHHHHHHHCC----CCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhc-ceecccCCCCCCc
Confidence 356789999999999864 899999999999852 2223466789999999999999974221 1111110000000
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 346 (676)
. ..+...+. .....++..+++++|+.++....=.+.++|.+++++
T Consensus 142 ~---------------------~~~~~~g~--------------~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~ 186 (277)
T PRK09628 142 W---------------------TVTAQYGN--------------IDPTFDACKLATAAGASFVARESVIDPQKLEKLLVK 186 (277)
T ss_pred e---------------------eeeccCCC--------------cCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHH
Confidence 0 00000000 000124467789999987511112689999999999
Q ss_pred hhhcCCCCcEEEEEEecc
Q 005820 347 VKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T~k 364 (676)
+.+ .++|++|+|.+.-
T Consensus 187 Al~--~~Gp~lIeV~~~c 202 (277)
T PRK09628 187 GFS--HKGFSFFDVFSNC 202 (277)
T ss_pred HHh--CCCCEEEEEcCCC
Confidence 986 5899999998764
No 153
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.92 E-value=5.1e-09 Score=110.26 Aligned_cols=134 Identities=19% Similarity=0.256 Sum_probs=88.2
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa-~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
|.+|.++|+|+|+++|++ +++|||++|||+ ++.| ...+.+|.+.+.|+++||.||+.+.. |..+.++..+.+
T Consensus 69 g~mG~alpaAiGaklA~P----d~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGm-t~~q~s~tt~~g 141 (286)
T PRK11867 69 TIHGRALAIATGLKLANP----DLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGL-TKGQYSPTSPVG 141 (286)
T ss_pred hhhhcHHHHHHHHHHhCC----CCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhh-hcCccCCCCCCC
Confidence 678999999999999854 899999999995 7755 45799999999999999999973222 111111111111
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 345 (676)
... .....|.. . ...+...+++++|..++....-.+.++|.++|+
T Consensus 142 ~~~---------------------~~~~~g~~-~-------------~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~ 186 (286)
T PRK11867 142 FVT---------------------KTTPYGSI-E-------------PPFNPVELALGAGATFVARGFDSDVKQLTELIK 186 (286)
T ss_pred ccc---------------------ccccCCCC-C-------------CCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHH
Confidence 000 00000000 0 002234557888988764333457999999999
Q ss_pred HhhhcCCCCcEEEEEEecc
Q 005820 346 EVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 346 ~a~~~~~~~P~lI~v~T~k 364 (676)
++.+ .++|++|++.+.-
T Consensus 187 ~Al~--~~Gp~lIev~~~C 203 (286)
T PRK11867 187 AAIN--HKGFSFVEILQPC 203 (286)
T ss_pred HHHh--CCCCEEEEEeCCC
Confidence 9986 5799999998653
No 154
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=98.91 E-value=4.2e-08 Score=118.74 Aligned_cols=239 Identities=18% Similarity=0.178 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHHcCC--CE---EEEeccccCc--cch-hhhhhhC-----CCceeeccccHHHHHHHH---------
Q 005820 400 SYTTYFAEALIAEAEVDK--DV---VAIHAAMGGG--TGL-NLFLRRF-----PTRCFDVGIAEQHAVTFA--------- 457 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~--~i---v~i~aD~~gs--~~l-~~f~~~~-----p~R~id~GIaE~~~v~~A--------- 457 (676)
+-.+|+...+.+..+.|. .+ -+++ .+.|+ +++ ..|.+.- -+-+|..|++|.-+++++
T Consensus 29 ~G~qAivR~~l~q~~~D~~aG~~ta~~vs-GYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~~ 107 (1165)
T PRK09193 29 TGTQALVRLPLLQRERDRAAGLNTAGFVS-GYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNLF 107 (1165)
T ss_pred eHHHHHHHHHHHHhhHHHhcCCCccceEE-eeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccccc
Confidence 446777777777666552 22 2222 23433 233 2333211 237899999999999999
Q ss_pred HHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCC----C-EEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecC
Q 005820 458 AGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKL----P-VRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPS 532 (676)
Q Consensus 458 ~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~l----p-V~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Ps 532 (676)
.|.+..|.+.+|+.-.+.+.|+.|.++|. ++... - |++++|..|.... .+-|+.+ ++...-+|-|+.|+
T Consensus 108 ~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~-n~~G~~~~GGvv~v~gDDpg~~SS--q~eqdSr---~~~~~a~iPvl~Ps 181 (1165)
T PRK09193 108 PGAKYDGVFGMWYGKGPGVDRSGDVFRHA-NAAGTSPHGGVLALAGDDHAAKSS--TLPHQSE---HAFKAAGMPVLFPA 181 (1165)
T ss_pred cceeeccceEEEecCcCCccccHhHHHHH-HhhcCCCCCcEEEEEecCCCCccc--cchhhhH---HHHHHcCCceeCCC
Confidence 77789999999999999999999998754 44443 2 5555566564211 1122222 33333466699999
Q ss_pred CHHHHHHHHHHHHHh---CCCCeEEEecCCC------Cc------cccCCCCCCCCccccC----ce-------------
Q 005820 533 DEAELFHMVATAAAI---DDRPSCFRYPRGN------GI------GVELPPGNKGIPLEVG----KG------------- 580 (676)
Q Consensus 533 d~~E~~~~~~~al~~---~~~P~~ir~~r~~------~~------~~~~p~~~~~~~~~~g----k~------------- 580 (676)
|++|+.++..++++. ..-||.++..... +. ....|. ++..+.+ ++
T Consensus 182 ~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~---~f~~~~~g~~~r~~~~p~~~~~~~~~ 258 (1165)
T PRK09193 182 NVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPE---DFEMPPGGLNIRWPDPPLEQEARLLD 258 (1165)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcc---cccCCcccccccCCCCcHHHHHHHHH
Confidence 999999999999873 4559998764221 00 001111 1111111 11
Q ss_pred ----------------eEeec--CCcEEEEEechhHHHHHHHHHHHHh-----CCCcEEEEEccccCcCcHHHHHHHhcc
Q 005820 581 ----------------RILIE--GERVALLGYGTAVQSCLAASALLES-----NGLRLTVADARFCKPLDHALIRSLAKS 637 (676)
Q Consensus 581 ----------------~vl~e--G~dv~Iva~Gs~v~~aleAa~~L~~-----~Gi~v~VId~~~l~P~d~e~i~~~~~~ 637 (676)
++... +.++.||++|.....+++|.+.|-- +-+.+.|+.+.+.+|||.+.++++++.
T Consensus 259 ~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g 338 (1165)
T PRK09193 259 YKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYKVGMVWPLEPQGVRAFAEG 338 (1165)
T ss_pred HHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEEeCCCCCCCHHHHHHHHhc
Confidence 11111 3579999999999999999876521 122388999999999999999999999
Q ss_pred CCEEEEEcCCC
Q 005820 638 HEVLITVEEGS 648 (676)
Q Consensus 638 ~~~vIvvEe~~ 648 (676)
.+.|+||||..
T Consensus 339 ~~~vlVVEE~~ 349 (1165)
T PRK09193 339 LDEILVVEEKR 349 (1165)
T ss_pred CCEEEEEecCc
Confidence 99999999965
No 155
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.91 E-value=8.5e-09 Score=108.55 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=105.9
Q ss_pred ccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcc-cccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCC
Q 005820 183 CFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPI 261 (676)
Q Consensus 183 ~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~ 261 (676)
.+..+..|.+++.|.|++.|.+.++++..|||+.|||.+ ..| .+++..|.+.+.|+++||.||+- ...|.-+.+++
T Consensus 65 ~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~-Y~nTGgQ~S~~ 141 (299)
T PRK11865 65 PWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEA-YMNTGIQRSGS 141 (299)
T ss_pred ccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCcc-ccCCCCCCCCC
Confidence 345667788899999999998877778899999999987 445 38999999999999999999983 33344444555
Q ss_pred CCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHH
Q 005820 262 PPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLV 341 (676)
Q Consensus 262 ~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~ 341 (676)
.+.|+..+. ++. .| ...|.... + -+...++.++|..|+..++-.|+.++.
T Consensus 142 Tp~Ga~t~t------sp~-------Gk---~~~G~~~~----k----------kd~~~Ia~a~g~~YVA~~~~~~~~~l~ 191 (299)
T PRK11865 142 TPFGASTTT------SPA-------GK---YSRGEDRP----K----------KNMPLIMAAHGIPYVATASIGYPEDFM 191 (299)
T ss_pred CCCCccccc------CCC-------Cc---ccCCCCCC----C----------CCHHHHHHHcCCCEEEEEeCCCHHHHH
Confidence 555543210 000 00 00000000 0 012234678899898777778999999
Q ss_pred HHHHHhhhcCCCCcEEEEEEec--cCCCcch
Q 005820 342 AILEEVKNTKTTGPVLIHVVTE--KGRGYPY 370 (676)
Q Consensus 342 ~al~~a~~~~~~~P~lI~v~T~--kg~G~~~ 370 (676)
+++++|.+ .+||.+||+.+. .++|+.+
T Consensus 192 ~~i~~A~~--~~Gps~I~v~sPC~~~~~~~~ 220 (299)
T PRK11865 192 EKVKKAKE--VEGPAYIQVLQPCPTGWGFPP 220 (299)
T ss_pred HHHHHHHh--CCCCEEEEEECCCCCCCCCCH
Confidence 99999987 479999999874 4565554
No 156
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.88 E-value=6.7e-09 Score=108.99 Aligned_cols=134 Identities=20% Similarity=0.249 Sum_probs=83.7
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
|.+|.++|+|+|+++|+ ++++|||++|||++. ++....+.+|.+.+.|+++||.||+.+.+ |..+..+..+.|.
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~-~mg~~eL~tA~r~nl~I~vIVlNN~~yGm-t~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLY-GIGGNHFVAAGRRNVDITVIVHDNQVYGL-TKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHH-hccHHHHHHHHHhCcCeEEEEEECHHHHh-hhcccccCccCCc
Confidence 44588999999999985 489999999999963 34456799999999999999999973222 1111111111110
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 346 (676)
-. . +...|... ..++++...+++++|+.....+ .+.++|.+++++
T Consensus 127 ~~------~---------------~~~~g~~~------------~~~np~~~a~A~g~g~va~~~~--~~~~eL~~ai~~ 171 (287)
T TIGR02177 127 KT------K---------------SLPYPNIQ------------DPVNPLLLAIALGYTFVARGFS--GDVAHLKEIIKE 171 (287)
T ss_pred ce------e---------------ecccCccC------------CCCCHHHHHHhCCCCeEEEEec--CCHHHHHHHHHH
Confidence 00 0 00000000 0011122234666666544322 689999999999
Q ss_pred hhhcCCCCcEEEEEEec
Q 005820 347 VKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T~ 363 (676)
+.+ .++|++|++.+.
T Consensus 172 Al~--~~GpslIeV~~p 186 (287)
T TIGR02177 172 AIN--HKGYALVDILQP 186 (287)
T ss_pred HHh--CCCCEEEEEeCC
Confidence 886 589999999864
No 157
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.88 E-value=8.4e-08 Score=111.50 Aligned_cols=406 Identities=16% Similarity=0.186 Sum_probs=236.8
Q ss_pred CCccchhhHHHHHHHHHchhcCC---CCeE--EEEEcCCccc-ccchHHHHHHhhhcC---CCEEEEEECCCCCccCccC
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGR---KNNV--VAVIGDGAMT-AGQAYEAMNNAGYLD---SDMIVILNDNKQVSLPTAT 256 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~---~~~v--v~viGDGa~~-eG~~~EAln~A~~~~---~~li~Iv~dN~~~s~~t~~ 256 (676)
-.|+=.--|+..|.+-|+.-... ..+| +.+.||.++. +|.+.|.+|+...-. .+-+-|+-||+ +.-+|..
T Consensus 297 PSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQ-iGFTTsp 375 (906)
T COG0567 297 PSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQ-IGFTTSP 375 (906)
T ss_pred cchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecC-CCCCCCc
Confidence 35665667888898887653322 2234 4899999985 599999999997543 77888888886 5555543
Q ss_pred CCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCC
Q 005820 257 LDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN 336 (676)
Q Consensus 257 ~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd 336 (676)
.+..+.++. .++ .+..+...+ +|+|.|
T Consensus 376 ~~sRSt~Y~---------------------------------TDv-------------------AKm~~aPif-HVN~DD 402 (906)
T COG0567 376 ADARSTPYC---------------------------------TDV-------------------AKMIEAPIF-HVNADD 402 (906)
T ss_pred ccccCCCCC---------------------------------CCh-------------------hhccCCcee-ecccCC
Confidence 444333321 122 334455544 899999
Q ss_pred HHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhhhh----h-----cccCCccc-------cc---Cc--------
Q 005820 337 VDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAEKA----A-----DKYHGVAK-------FD---PA-------- 387 (676)
Q Consensus 337 ~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae~~----~-----~~~H~~~~-------fd---~~-------- 387 (676)
++++..+.+.+-+. .-.++++|.+..++-.|+-.+... + -+-|-.+. +. ..
T Consensus 403 PEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~ 482 (906)
T COG0567 403 PEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELV 482 (906)
T ss_pred chhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHH
Confidence 99987776644322 247899999999998887533211 0 01121110 00 00
Q ss_pred ---------------------------cc---ccc---ccc----------------hh----hhhHHHHH---------
Q 005820 388 ---------------------------TG---KQF---KSS----------------AR----TQSYTTYF--------- 405 (676)
Q Consensus 388 ---------------------------~g---~~~---~~~----------------~~----~~~~~~a~--------- 405 (676)
.+ ... ... +. .++..+.+
T Consensus 483 ~~~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~v~~~~~~r~~~~~~ 562 (906)
T COG0567 483 NDYRDALDQGFEVVKEYKEMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPRVKKILEDRKAMAEG 562 (906)
T ss_pred HHHHHHhhhhhhHHhHHHhhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHHHHHHHHHHHHHhcc
Confidence 00 000 000 00 00000100
Q ss_pred ----------HHHHHHHHHcCCCEEEEeccccCccch------------------hhhhhhCCC--ceeeccccHHHHHH
Q 005820 406 ----------AEALIAEAEVDKDVVAIHAAMGGGTGL------------------NLFLRRFPT--RCFDVGIAEQHAVT 455 (676)
Q Consensus 406 ----------~~aL~~~~~~d~~iv~i~aD~~gs~~l------------------~~f~~~~p~--R~id~GIaE~~~v~ 455 (676)
.-+..-++.+...+.+-+.|.+.+|=. ..+... .. ...|.+++|.++++
T Consensus 563 ~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~-q~~f~v~nS~LSEeAvlg 641 (906)
T COG0567 563 GQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKG-QGKFEVINSPLSEEAVLG 641 (906)
T ss_pred ccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcccc-cceEEEEechhhHHHHHh
Confidence 001111222334455566676655411 111111 12 34799999999999
Q ss_pred HHHHHHhcCCee--EEee-chhHH---HHHHHHHHHhhh---cCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcC--C
Q 005820 456 FAAGLACEGLKP--FCAI-YSSFM---QRAYDQVVHDVD---LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACL--P 524 (676)
Q Consensus 456 ~A~GlA~~G~~p--~~~t-~~~Fl---~ra~dqi~~~~a---~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~i--P 524 (676)
+=.|.+..--+. +++- |.+|. |..+||.+..-- .....+++...| |+-| .||.|+....-.++.-. -
T Consensus 642 FEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPH-gyEG-QGPEHSSaRlER~LQLcaE~ 719 (906)
T COG0567 642 FEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPH-GYEG-QGPEHSSARLERFLQLCAEN 719 (906)
T ss_pred hhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccC-CCCC-CCCcCccchhHHHHHhhHHh
Confidence 999999986443 3333 88886 677888653211 134556666666 4334 48999986555555433 4
Q ss_pred CCEEEecCCHHHHHHHHHHH-HHhCCCCeEEEecCCCCccccCCCCCCCCccccCcee-Eeec----C--CcEEEEEech
Q 005820 525 NMVVMAPSDEAELFHMVATA-AAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGR-ILIE----G--ERVALLGYGT 596 (676)
Q Consensus 525 ~l~V~~Psd~~E~~~~~~~a-l~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~-vl~e----G--~dv~Iva~Gs 596 (676)
||+|..|+++...+.+++.- +....+|.++..|+.......... +-..+.-|+.+ ++.+ + -.-+++|.|-
T Consensus 720 NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S--~~~el~~~~F~~vl~d~~~~~~~v~rvvlcSGK 797 (906)
T COG0567 720 NMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVS--SLEELTEGTFQPVLEDIDELDPKVKRVVLCSGK 797 (906)
T ss_pred CCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCC--chhhhchhhhhhhhccccccccceeeEEeeccc
Confidence 89999999999999999854 444567999988876432100000 00011111111 1111 1 2456778887
Q ss_pred hHHHHHHHHHHHHhCC-CcEEEEEccccCcCcHHHHHHHhccC----CEEEEEcCCC-CCCHH
Q 005820 597 AVQSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSH----EVLITVEEGS-IGGFG 653 (676)
Q Consensus 597 ~v~~aleAa~~L~~~G-i~v~VId~~~l~P~d~e~i~~~~~~~----~~vIvvEe~~-~gG~g 653 (676)
+.....+.. ++.| .++-++.+..+.|||.+.+.+.+++. ..+.+-||.. .|-|.
T Consensus 798 vyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~ 857 (906)
T COG0567 798 VYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY 857 (906)
T ss_pred hHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH
Confidence 776655554 3344 47889999999999999988876554 5777888876 46665
No 158
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.80 E-value=1.4e-08 Score=117.91 Aligned_cols=127 Identities=24% Similarity=0.348 Sum_probs=89.8
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~e-G~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
.|.+|.++|+|+|+++|. ++++||+++|||++.. | ..+|.+|.+++.|+++||.||+.+.. +..+.. ...
T Consensus 402 ~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~-~~~q~~--~~~ 472 (595)
T TIGR03336 402 TLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAM-TGHQPN--PGT 472 (595)
T ss_pred eeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceec-cCCCCC--CCC
Confidence 488999999999999885 4889999999999983 2 35688999999999999999974322 110100 000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+ . ...+ ...-..++..+.+++|+.++.+.+-.+++++.++|
T Consensus 473 ~-~------------------------~~~~--------------~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al 513 (595)
T TIGR03336 473 G-V------------------------TGMG--------------EATKEISIEELCRASGVEFVEVVDPLNVKETIEVF 513 (595)
T ss_pred C-C------------------------CCCC--------------CcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHH
Confidence 0 0 0000 00012345566899999998777778889999999
Q ss_pred HHhhhcCCCCcEEEEEEe
Q 005820 345 EEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T 362 (676)
+++.+ .++|++|++..
T Consensus 514 ~~a~~--~~gp~li~v~~ 529 (595)
T TIGR03336 514 KAALA--AEGVSVIIAKQ 529 (595)
T ss_pred HHHHh--cCCCEEEEEcc
Confidence 99886 57999999964
No 159
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.74 E-value=1.8e-08 Score=110.38 Aligned_cols=125 Identities=20% Similarity=0.292 Sum_probs=85.5
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
-||.|+++|+|+|.++|.+ +++||.|+|||++| ++-..+.+--+|+ .|+|||+||++| ++...-+ |+..
T Consensus 410 WGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~Q--lTvQEiStmiR~gl~p~ifvlNN~GY-TIEr~IH-g~~~-- 479 (557)
T COG3961 410 WGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQ--LTVQEISTMIRWGLKPIIFVLNNDGY-TIERAIH-GPTA-- 479 (557)
T ss_pred hhhcccccHhhhhhhhcCC----CccEEEEEcCchhh--hhHHHHHHHHHcCCCcEEEEEcCCCc-EEEehhc-CCCc--
Confidence 3899999999999999976 89999999999999 6667788888888 677777777774 5533322 2222
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeecc-CCCCCHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP-VDGHNVDDLVAI 343 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~-vdGhd~~~l~~a 343 (676)
.|+.|..|- +.++.++||..-... ..-..-+++..+
T Consensus 480 --------------~YNdI~~Wd-----------------------------~~~l~~afg~~~~~~~~~~~~~~~l~~~ 516 (557)
T COG3961 480 --------------PYNDIQSWD-----------------------------YTALPEAFGAKNGEAKFRATTGEELALA 516 (557)
T ss_pred --------------Ccccccccc-----------------------------hhhhhhhcCCCCceEEEeecChHHHHHH
Confidence 255554442 123466666532111 111345677777
Q ss_pred HHHhhhcCCCCcEEEEEEecc
Q 005820 344 LEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~k 364 (676)
++.+.+. .+++++|||...+
T Consensus 517 ~~~~~~~-~~~i~lIEv~lp~ 536 (557)
T COG3961 517 LDVAFAN-NDRIRLIEVMLPV 536 (557)
T ss_pred HHHHhcC-CCceEEEEEecCc
Confidence 8777763 5789999998543
No 160
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=98.74 E-value=1.7e-07 Score=113.37 Aligned_cols=213 Identities=18% Similarity=0.147 Sum_probs=141.5
Q ss_pred CceeeccccHHHH---------HHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhh-hcCCCC---EEEEeecCCCcCCC
Q 005820 441 TRCFDVGIAEQHA---------VTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDV-DLQKLP---VRFAMDRAGLVGAD 507 (676)
Q Consensus 441 ~R~id~GIaE~~~---------v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~-a~~~lp---V~iv~~~~G~~G~d 507 (676)
+-+|..|++|.-+ +.++.|.+..|.+.+++.-.+.+.|+.|.++|.. ++.... |++++|..|....
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~SS- 163 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAKSS- 163 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCccc-
Confidence 3789999999999 5555666667999999999999999999987653 243333 5555566564211
Q ss_pred CCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCCC------Cc--c----ccCCCCCCC
Q 005820 508 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRGN------GI--G----VELPPGNKG 572 (676)
Q Consensus 508 G~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~~------~~--~----~~~p~~~~~ 572 (676)
.+-|+.+ ++...-+|-|+.|+|++|+.++...+++. ..-||.++..... +. . ...|. +
T Consensus 164 -q~eqdSr---~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~---~ 236 (1186)
T PRK13029 164 -SVAHQSD---HTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD---D 236 (1186)
T ss_pred -cCHHHHH---HHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc---c
Confidence 1222222 23333466699999999999999999873 4459998775321 00 0 01111 0
Q ss_pred CccccC-----------------------------c---e-eEee--cCCcEEEEEechhHHHHHHHHHHHHh-----CC
Q 005820 573 IPLEVG-----------------------------K---G-RILI--EGERVALLGYGTAVQSCLAASALLES-----NG 612 (676)
Q Consensus 573 ~~~~~g-----------------------------k---~-~vl~--eG~dv~Iva~Gs~v~~aleAa~~L~~-----~G 612 (676)
+..+.+ + - ++.. ++.++.||++|.....+++|.+.|-- +-
T Consensus 237 f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~ 316 (1186)
T PRK13029 237 FVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAA 316 (1186)
T ss_pred ccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccc
Confidence 111110 0 0 1111 23579999999999999999876521 12
Q ss_pred CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 613 LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 613 i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
+.++|+.+.+.+|||.+.++++++..+.|+||||... =+-..|.+.+.+
T Consensus 317 ~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p-~iE~qlk~~l~~ 365 (1186)
T PRK13029 317 LGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA-VIEYQLKEELYN 365 (1186)
T ss_pred cCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch-HHHHHHHHHHhh
Confidence 2488999999999999999999999999999999652 233444444433
No 161
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.68 E-value=5.9e-08 Score=124.03 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=91.8
Q ss_pred CCCccch--hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhc--CCCEEEEEECCCCCccCccCCCCC
Q 005820 185 GTGHSST--SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYL--DSDMIVILNDNKQVSLPTATLDGP 260 (676)
Q Consensus 185 g~G~~G~--~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~--~~~li~Iv~dN~~~s~~t~~~~g~ 260 (676)
+.|.+|. ++|.|+|+++|. +++|+|++|||+++ +...+|.+|..+ ++|+++||.||+...+-..
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~--m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~----- 824 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFL--HDTNGLSILSQRIARKPMTILVINNHGGAIFSL----- 824 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHH--hhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhc-----
Confidence 4577888 599999999884 68899999999999 666789999874 8999999888873111000
Q ss_pred CCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHH
Q 005820 261 IPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDL 340 (676)
Q Consensus 261 ~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l 340 (676)
. ++.. +. .... .+.+......+++..+.++||+++..+ .+.++|
T Consensus 825 l-~~~~------~~-----------------------~~~~---~~~~~~~~~~~df~~lA~a~G~~~~rV---~~~~eL 868 (1655)
T PLN02980 825 L-PIAK------RT-----------------------EPRV---LNQYFYTSHDISIENLCLAHGVRHLHV---GTKSEL 868 (1655)
T ss_pred C-ccCC------CC-----------------------cchh---HHHHhcCCCCCCHHHHHHHcCCceeec---CCHHHH
Confidence 0 0000 00 0000 011110112356778899999999865 689999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeccCC
Q 005820 341 VAILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 341 ~~al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
.++|+++.+ .++|++|||.|.+-.
T Consensus 869 ~~aL~~a~~--~~~p~lIEV~t~~~~ 892 (1655)
T PLN02980 869 EDALFTSQV--EQMDCVVEVESSIDA 892 (1655)
T ss_pred HHHHHHhhc--cCCCEEEEEecChhh
Confidence 999998875 589999999997543
No 162
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.58 E-value=1.1e-06 Score=84.31 Aligned_cols=144 Identities=14% Similarity=0.194 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCC-CEEEEeccccCccchhhhhh---h---------------CCCceeeccccHHHHHHHHHHHHhc
Q 005820 403 TYFAEALIAEAEVDK-DVVAIHAAMGGGTGLNLFLR---R---------------FPTRCFDVGIAEQHAVTFAAGLACE 463 (676)
Q Consensus 403 ~a~~~aL~~~~~~d~-~iv~i~aD~~gs~~l~~f~~---~---------------~p~R~id~GIaE~~~v~~A~GlA~~ 463 (676)
.++++.|.+.++.++ ++.++++|...|+.|...-+ + -+++-+..-++|+.+.|+..|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467778888888776 79999999988887743211 1 1245555669999999999999999
Q ss_pred CCeeEEeechhHH---HHHHHHHHHhhh-------cCCCC-EEEEeecCCC-cCCCCCCCCChhhHh-HhhcCCC-CEEE
Q 005820 464 GLKPFCAIYSSFM---QRAYDQVVHDVD-------LQKLP-VRFAMDRAGL-VGADGPTHCGSFDVT-FMACLPN-MVVM 529 (676)
Q Consensus 464 G~~p~~~t~~~Fl---~ra~dqi~~~~a-------~~~lp-V~iv~~~~G~-~G~dG~tH~~~~d~a-~~~~iP~-l~V~ 529 (676)
|.+.++++|..|+ .-++.|-.-.+- ....| +.++.+.-.- .+.+|.|||...=+. ++...|+ ++||
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~Rvy 161 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVVRVY 161 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-EEEE
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCcccceee
Confidence 9999999999997 233333221111 12333 3333333222 578999999644333 3333444 5799
Q ss_pred ecCCHHHHHHHHHHHHH
Q 005820 530 APSDEAELFHMVATAAA 546 (676)
Q Consensus 530 ~Psd~~E~~~~~~~al~ 546 (676)
.|.|++-+..++..|++
T Consensus 162 lPpDANtlLav~~~clr 178 (179)
T PF03894_consen 162 LPPDANTLLAVMDHCLR 178 (179)
T ss_dssp E-SSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHHHHHHhc
Confidence 99999999999999986
No 163
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.50 E-value=4.3e-07 Score=92.86 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=84.0
Q ss_pred eeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCCCChhhHhHhh
Q 005820 443 CFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHCGSFDVTFMA 521 (676)
Q Consensus 443 ~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH~~~~d~a~~~ 521 (676)
.+-..-+|.++++++.|+|+.|.|.++.|.+..+..+.|.+. .++..++|++++. .|+|. +..+++|+...|+.+.+
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~Gl~lm~e~l~-~a~~~~~P~V~~~~~R~g~-~~g~~~~~~q~D~~~~~ 115 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPGLNLMAEPLY-WAAGTELPIVIVVVQRAGP-SPGLSTQPEQDDLMAAR 115 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCHHHHHCCCHH-HHHHTT--EEEEEEEB----SSSB--SB-SHHHHHTT
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCcccccHhHHH-HHHHcCCCEEEEEEECCCC-CCCCcCcCChhHHHHHH
Confidence 567779999999999999999999999999999999999874 5689999987776 56653 33368999999986666
Q ss_pred cCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 522 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
--++.|+.|+|++|+.++...|++ +...|++++.+..
T Consensus 116 -d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 116 -DSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp -TSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred -hcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 468899999999999999999987 4567999988653
No 164
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.42 E-value=9.2e-07 Score=94.34 Aligned_cols=136 Identities=15% Similarity=0.226 Sum_probs=101.4
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
|.|.+|.|+|+|+|..+|. ++..||-+-||+++. |....|.++...++|+-+++.||..+.. +
T Consensus 522 GLGtMGfGLPAAIGAsVA~----P~~iViDIDGDaSF~--Mt~~ELat~rq~~~PVKiLiLNNeeqGM--------V--- 584 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVAN----PDAIVIDIDGDASFI--MTVQELATIRQENLPVKILILNNEEQGM--------V--- 584 (675)
T ss_pred CccccccCcchhhcccccC----cccEEEeccCCceee--eehHhhhhhhhcCCceEEEEecchhhhh--------H---
Confidence 5688999999999999885 499999999999998 7777799999999999999999974221 0
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
. .++++..+-+..-.+..+|++-.|++++|+....+ .--++|.+.+
T Consensus 585 ----t---------------------------QWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV---~K~edL~~k~ 630 (675)
T KOG4166|consen 585 ----T---------------------------QWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRV---TKKEDLREKI 630 (675)
T ss_pred ----H---------------------------HHHHHHHHhhhccccccCccHHHHHHhcCCchhee---ehHHHHHHHH
Confidence 0 11333322222223445677888899999998755 4568888888
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCcchhhh
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRGYPYAEK 373 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G~~~ae~ 373 (676)
++... .+||++++|...+-..+-|+-.
T Consensus 631 kefls--TkGPvLleV~v~~kehVlPmvp 657 (675)
T KOG4166|consen 631 KEFLS--TKGPVLLEVIVPHKEHVLPMVP 657 (675)
T ss_pred HHHhC--CCCCeEEEEEccCccceeeecC
Confidence 88876 5899999999876655555443
No 165
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.40 E-value=1.1e-06 Score=94.87 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=99.5
Q ss_pred CCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCC
Q 005820 180 EYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDG 259 (676)
Q Consensus 180 ~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g 259 (676)
-|-.+|..-+|+-|+-++|+.+| .+++-||+++|||+.. |.+-.|.++..++..+++++.||..+.
T Consensus 437 YH~EYgfSCMGYEiaG~lG~K~a----~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyG-------- 502 (617)
T COG3962 437 YHLEYGFSCMGYEIAGGLGAKAA----EPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYG-------- 502 (617)
T ss_pred eeeeecccccccccccccccccC----CCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcc--------
Confidence 34566777888889888887644 5689999999999999 888889999999999999999997422
Q ss_pred CCCCcchhhHHHhhhh----cChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCC
Q 005820 260 PIPPVGALSSALSRLQ----SNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH 335 (676)
Q Consensus 260 ~~~~vg~ls~~l~~~~----~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGh 335 (676)
. |.+|| ....++.+|+.... ..++.-|++.-++++|.....+ +
T Consensus 503 C----------In~LQm~~Gg~sf~~~~r~~~~e--------------------~~~~~vDfA~~A~s~Ga~~~kv---~ 549 (617)
T COG3962 503 C----------INRLQMATGGASFNNLLRDTDHE--------------------EEILQVDFAAHAESYGAKAYKV---G 549 (617)
T ss_pred h----------hhhhhhhcCcchhhhhhhhhccc--------------------CCCCcccHHHHHhhcCceeEec---C
Confidence 1 11222 11122333322110 1233446667799999988755 7
Q ss_pred CHHHHHHHHHHhhhcCCCCcEEEEEEecc
Q 005820 336 NVDDLVAILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 336 d~~~l~~al~~a~~~~~~~P~lI~v~T~k 364 (676)
++++|..+|+.+|. ..++++|+++|..
T Consensus 550 ~i~eL~aAL~~Ak~--~~~ttvi~I~t~P 576 (617)
T COG3962 550 TIEELEAALADAKA--SDRTTVIVIDTDP 576 (617)
T ss_pred CHHHHHHHHHHHHh--CCCCEEEEEecCC
Confidence 99999999999997 5899999999875
No 166
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.38 E-value=7.3e-07 Score=97.60 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=51.6
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCC
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLD 258 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~ 258 (676)
-||.|+++++++|+|+|.. +++|+.|+|||+++ +.-..+.++.+|++|.++++.||+.+.+...-++
T Consensus 414 wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~q--lTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQ--LTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred EeeccccchhhhhhhhccC----CceEEEEecCccce--eeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 4899999999999999976 79999999999999 5556699999999665555555543566544444
No 167
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.30 E-value=1e-05 Score=88.07 Aligned_cols=260 Identities=20% Similarity=0.215 Sum_probs=136.1
Q ss_pred ccccccccccchHHHhhccCCCcc--ccccccccccCCCCCCCCcccCCCCccc-----ccc------cC---HHHHHHH
Q 005820 34 ALFSHFSHKLDNHQIQLKKRPNGV--CASLSERGEYHSQRPPTPLLDTINYPIH-----MKN------LS---IRELKQL 97 (676)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~i~~~~~-----~~~------~~---~~~l~~l 97 (676)
|-+.|.+|-... -+.++...+. +.+.+++++= .-||..+++.+|..-.. |+. .+ .++|.+.
T Consensus 285 arlnwiLhfG~~--Pk~~kd~KfIqvd~n~Eel~~n-~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek 361 (571)
T KOG1185|consen 285 ARLNWILHFGLP--PKWSKDVKFIQVDINPEELGNN-FVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREK 361 (571)
T ss_pred ceeeEEEecCCC--CccCCCceEEEEeCCHHHHhcc-cCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHH
Confidence 445666666554 2333333333 2333444321 13777777776655422 222 12 3567777
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhcc-CC-CCccccCcCchHHHHHHHcCChHHhhhhHhcCCCCCCCC
Q 005820 98 ADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFN-AP-KDRILWDVGHQTYPHKILTGRRDKMHTMRQTDGLSGFTK 175 (676)
Q Consensus 98 a~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~-~p-~D~~i~s~gH~~y~~~~l~G~~~~l~~~r~~~gl~g~~~ 175 (676)
+++-+....++..+.+-- |- ...+|+.+-. -| +|-|+.+-|--. +-.||.- + .+-.|.
T Consensus 362 ~~~ne~~~~~~~~~~~~p----LN---~~~~~~~vre~L~~~d~ilVsEGant----mdigr~~----l-----~~~~Pr 421 (571)
T KOG1185|consen 362 DKQNEAAVEEKAAKKSTP----LN---YYQVLQTVRELLPNDDTILVSEGANT----MDIGRTL----L-----PPRGPR 421 (571)
T ss_pred HHhhHHHHHHHhhccCCC----Cc---HHHHHHHHHHhcCCCCcEEEecCCcc----hhhhhhh----c-----cCCCcc
Confidence 777777666665543221 22 2233443322 25 787887666221 1122100 0 122343
Q ss_pred CCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCC-ccCc
Q 005820 176 RSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPT 254 (676)
Q Consensus 176 ~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~-s~~t 254 (676)
++ ...+.| |.+|-|++.|++.|++ .+++.|||+-||+++-- ..-.+.++.++++|+++||-||+.+ .+.+
T Consensus 422 ~r-LDaGtf--gTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGf--SaME~ET~vR~~Lpvv~vV~NN~Giyg~d~ 492 (571)
T KOG1185|consen 422 RR-LDAGTF--GTMGVGLGFALAAALA----APDRKVVCVEGDSAFGF--SAMELETFVRYKLPVVIVVGNNNGIYGLDD 492 (571)
T ss_pred cc-cCCccc--cccccchhHHHHHHhh----CCCCeEEEEecCcccCc--chhhHHHHHHhcCCeEEEEecCCcccccCc
Confidence 32 233334 4455555555555544 57999999999999963 3334789999999998888877532 1110
Q ss_pred cCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCC
Q 005820 255 ATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG 334 (676)
Q Consensus 255 ~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdG 334 (676)
+ .|.+|++- ..+..-.+. .+ .-+..+..+.++||-+.. .|
T Consensus 493 ---~--------------------~~~~I~e~---~~~~~~p~~-~l----------~~~~rY~~v~ka~G~kG~-~v-- 532 (571)
T KOG1185|consen 493 ---D--------------------GWKQISEQ---DPTLDLPPT-AL----------LANTRYDKVAKAFGGKGY-FV-- 532 (571)
T ss_pred ---c--------------------cHHHHhhc---CcccCCCcc-cc----------cccccHHHHHHHcCCCce-ee--
Confidence 0 12222200 000000000 00 001112344677776654 23
Q ss_pred CCHHHHHHHHHHhhhcCCCCcEEEEEEeccCC
Q 005820 335 HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 335 hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
..+++|..+++++... +++|++|.+...+..
T Consensus 533 ~t~~el~~~l~~a~q~-~~~psvINVlI~p~~ 563 (571)
T KOG1185|consen 533 STVEELLAALQQACQD-TDKPSVINVLIGPTA 563 (571)
T ss_pred CCHHHHHHHHHHHHhc-CCCCeEEEEEecccc
Confidence 4899999999988764 569999999876654
No 168
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.87 E-value=6.1e-05 Score=79.72 Aligned_cols=131 Identities=22% Similarity=0.313 Sum_probs=90.4
Q ss_pred chhhHHHHHHHHHchhcCCCCeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhh
Q 005820 190 STSISAGLGMAVGRDLKGRKNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALS 268 (676)
Q Consensus 190 G~~ls~A~G~AlA~~~~~~~~~vv~viGDG-a~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls 268 (676)
|-.++.|.|+.+|.+ +..||++-||| ++..|. ..+..|...+.++++||-||. +..-|..+.+++.+.|+..
T Consensus 73 gra~a~atGik~A~~----~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNe-vYgnTggQ~S~tTp~G~~t 145 (294)
T COG1013 73 GRAAAVATGIKLANP----ALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNE-VYGNTGGQASPTTPKGAKT 145 (294)
T ss_pred CcchhhHHHHHHhcc----CCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCe-ecccCCCccCCCCCCCcee
Confidence 446899999999977 66899999999 666664 578888899999999999998 4445555666666666532
Q ss_pred HHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhh
Q 005820 269 SALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK 348 (676)
Q Consensus 269 ~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~ 348 (676)
+.. ..|.... .| -+...+.-++|..|+..+-=-++.++.+.+++|.
T Consensus 146 ~t~---------------------p~Gk~~~---~k----------~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~ 191 (294)
T COG1013 146 KTT---------------------PYGKRSE---KK----------KDPGLLAMAAGATYVARASVGDPKDLTEKIKKAA 191 (294)
T ss_pred eec---------------------CCCCCcC---CC----------CCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHH
Confidence 110 0011000 00 0123346678888876664445888888888887
Q ss_pred hcCCCCcEEEEEEec
Q 005820 349 NTKTTGPVLIHVVTE 363 (676)
Q Consensus 349 ~~~~~~P~lI~v~T~ 363 (676)
+ ..||.+|++.+-
T Consensus 192 ~--~~Gps~I~v~sP 204 (294)
T COG1013 192 E--HKGPSFIDVLSP 204 (294)
T ss_pred h--ccCCeEEEEecC
Confidence 6 469999999864
No 169
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.82 E-value=6.7e-05 Score=84.76 Aligned_cols=124 Identities=26% Similarity=0.356 Sum_probs=83.9
Q ss_pred ccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 188 HSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 188 ~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~e-G~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
.+|.||++|-|++++. ++++|++||||.+.. |. .++.+|.+.+.|++++|.||.. ...|..+.-+...+.+
T Consensus 429 ~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~-tAMTGgQp~pg~~~~~ 500 (640)
T COG4231 429 MMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRT-TAMTGGQPHPGTGVAA 500 (640)
T ss_pred hccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccc-hhccCCCCCCCccccc
Confidence 3455677777776654 389999999999965 44 5799999999999999999984 3333333222111100
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 346 (676)
.. .+... ..+. .+.+++|..++.++|=+|++++.+++++
T Consensus 501 ~g----------------------~~~~~---i~ie----------------e~~r~~Gv~~v~~vdp~~~~~~~~~~ke 539 (640)
T COG4231 501 EG----------------------TKSTA---IVIE----------------EVVRAMGVEDVETVDPYDVKELSEAIKE 539 (640)
T ss_pred CC----------------------Cccce---eEhh----------------HhhhhcCceeeeccCCcchHHHHHHHHH
Confidence 00 00000 0111 2267889999988898999999999999
Q ss_pred hhhcCCCCcEEEEEEe
Q 005820 347 VKNTKTTGPVLIHVVT 362 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T 362 (676)
+.+. .+|.+|+++-
T Consensus 540 ale~--~gpsViiak~ 553 (640)
T COG4231 540 ALEV--PGPSVIIAKR 553 (640)
T ss_pred HhcC--CCceEEEEcC
Confidence 9984 6799998763
No 170
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.77 E-value=0.0011 Score=63.75 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCC--CCCCCChhh
Q 005820 439 FPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGAD--GPTHCGSFD 516 (676)
Q Consensus 439 ~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~d--G~tH~~~~d 516 (676)
..-|++.+- .|++++.+|.|.++.|.+.++.+..+.+..+.+.+.+. ...+.|++++....+..+.. ...|+....
T Consensus 40 ~~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG~~n~~~~l~~a-~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~ 117 (160)
T cd07034 40 LGGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPGLNLMAEALYLA-AGAELPLVIVVAQRPGPSTGLPKPDQSDLMA 117 (160)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcchHHHHHHHHHHH-HhCCCCEEEEEeeCCCCCCCCCCcCcHHHHH
Confidence 346888886 99999999999999988866666888888888887654 45689999887544432221 123333333
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEec
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYP 557 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~ 557 (676)
..+++ |-..++.+.+++|+..++..|+. ..++|++++++
T Consensus 118 ~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~~ 159 (160)
T cd07034 118 ARYGG--HPWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLSD 159 (160)
T ss_pred HHhCC--CCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 33333 34567889999999999998876 23479998864
No 171
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=97.53 E-value=0.00012 Score=76.32 Aligned_cols=135 Identities=21% Similarity=0.269 Sum_probs=89.9
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
.|.+|+.||+|+|.-.| .+++.|+++-||-.++ ...|.+...+..++|.|-++.||.+.
T Consensus 418 agplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnayl--------------- 476 (592)
T COG3960 418 AGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYL--------------- 476 (592)
T ss_pred cCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHH---------------
Confidence 69999999999998766 4589999999999999 77899999999999999999999752
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHH---HhhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEY---ARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~---~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
+.||..-+++.-.. .+.-.++.. ..+-..-+.-.+.|++|++.+.+ .+.+++..
T Consensus 477 ---------------glirqaqr~f~mdy-----~v~laf~nin~~~~~gygvdhv~v~eglgckairv---~~p~e~a~ 533 (592)
T COG3960 477 ---------------GLIRQAQRAFDMDY-----CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV---FKPEDIAP 533 (592)
T ss_pred ---------------HHHHHHHhcCCccc-----eeeehhhccCCccccccCccceeehhccCceeEEe---cChHHhhH
Confidence 22222222111000 000000000 00000123346689999998866 56778888
Q ss_pred HHHHhhhc--CCCCcEEEEEEecc
Q 005820 343 ILEEVKNT--KTTGPVLIHVVTEK 364 (676)
Q Consensus 343 al~~a~~~--~~~~P~lI~v~T~k 364 (676)
+|++++.. +..-|+++|+.-++
T Consensus 534 af~~a~~lm~eh~vpvvve~iler 557 (592)
T COG3960 534 AFEQAKALMAQHRVPVVVEVILER 557 (592)
T ss_pred HHHHHHHHHHhcCCCeeeehHHHH
Confidence 88876643 35789999987554
No 172
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.29 E-value=0.0029 Score=69.19 Aligned_cols=125 Identities=19% Similarity=0.240 Sum_probs=86.6
Q ss_pred hhhhCCC-ceeeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHh--hhcCCCCEEEEeecCCCcC-CCCC
Q 005820 435 FLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHD--VDLQKLPVRFAMDRAGLVG-ADGP 509 (676)
Q Consensus 435 f~~~~p~-R~id~GIaE~~~v~~A~GlA~~-G~~p~~~t~~~Fl~ra~dqi~~~--~a~~~lpV~iv~~~~G~~G-~dG~ 509 (676)
+.++.|+ |++-+ -+|..++++|+|+.++ |.+|++.+-.+.+..+...+... ....++|+++++...|-.| .|=|
T Consensus 20 ~~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~dep 98 (361)
T TIGR03297 20 ITDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEP 98 (361)
T ss_pred HHhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCc
Confidence 3434543 55544 6799999999999999 99999999777777777766544 3446999999998888766 5668
Q ss_pred CCCC--hhhHhHhhcCCCCEEEec-CCHHHHHHHHHHHHH---hCCCCeEEEecCCCC
Q 005820 510 THCG--SFDVTFMACLPNMVVMAP-SDEAELFHMVATAAA---IDDRPSCFRYPRGNG 561 (676)
Q Consensus 510 tH~~--~~d~a~~~~iP~l~V~~P-sd~~E~~~~~~~al~---~~~~P~~ir~~r~~~ 561 (676)
+|.. .--..++..+ ++..... .+..|....+..+++ ..+.|+.+.+.++..
T Consensus 99 qh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 99 QHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred hhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 8844 3223455543 5544444 566666655555543 367899999987653
No 173
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.28 E-value=0.0055 Score=58.47 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=82.0
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCe-eEEee-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLK-PFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~-p~~~t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
-|++.+ ..|..++.+|.|++..+.+ +++.+ ..+.+..+...+. .+...++|++++....+.....-.+||......
T Consensus 35 ~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~-~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~ 112 (155)
T cd07035 35 IRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA-NAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVA 112 (155)
T ss_pred CEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH-HHHhhCCCEEEEeCCCccccccCCcccccCHHH
Confidence 466665 7999999999999998554 44443 6777777777764 456779999998755443222223466666666
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh---C-CCCeEEEecC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI---D-DRPSCFRYPR 558 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~-~~P~~ir~~r 558 (676)
+++.+-.+ .+...+++|+...+..|++. . .+|++|.+|+
T Consensus 113 ~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip~ 155 (155)
T cd07035 113 LFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLPK 155 (155)
T ss_pred HHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEecC
Confidence 77777544 67788999999999998873 2 5799987753
No 174
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00051 Score=77.09 Aligned_cols=59 Identities=34% Similarity=0.563 Sum_probs=53.0
Q ss_pred hhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc
Q 005820 320 LFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (676)
Q Consensus 320 lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~ 382 (676)
.|++|||+.+ .|||||+++|.+++.+++.. .++|++|.++|.+|+|....+ +..|||.+
T Consensus 200 r~ea~g~~~~-~V~~~d~d~i~ka~~~a~~~-k~kpt~i~~~t~~g~G~~~ig--~~~~Hg~p 258 (632)
T KOG0523|consen 200 RFEAFGWNVI-IVDGGDVDEIRKAIGKAKSV-KGKPTAIKATTFIGRGSPYIG--SESVHGAP 258 (632)
T ss_pred HHHHhCceEE-EEcCcCHHHHHHHHhhhhhc-cCCceeeeeeeeeecCccccc--cccccCCc
Confidence 4999999987 89999999999999999854 589999999999999988765 67899987
No 175
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.90 E-value=0.019 Score=64.70 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC-C---CccCccCCCCCCCCcchh
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK-Q---VSLPTATLDGPIPPVGAL 267 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~-~---~s~~t~~~~g~~~~vg~l 267 (676)
-+|-|+|++.|. .+++++++||=++-.-+. ++........|++||+-||+ . .-+|+... .
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~N--gLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~----~----- 490 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDLN--GLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQS----E----- 490 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhccc--hHhhcCCCCCCeEEEEEeCCCceeeeeccCCCC----c-----
Confidence 389999999875 456999999999864433 45555555578766665554 2 11122110 0
Q ss_pred hHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHh
Q 005820 268 SSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEV 347 (676)
Q Consensus 268 s~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a 347 (676)
. -++.+..-+-.-+++.+.+.||+.|..+ ++++++.++++.+
T Consensus 491 --------------------------------~---~fe~~F~tPh~ldF~~la~~y~l~y~~~---~s~~~l~~~~~~~ 532 (566)
T COG1165 491 --------------------------------P---VFERLFGTPHGLDFAHLAATYGLEYHRP---QSWDELGEALDQA 532 (566)
T ss_pred --------------------------------c---hHHHhcCCCCCCCHHHHHHHhCcccccc---CcHHHHHHHHhhh
Confidence 0 0111222222345666788899998866 7899999999887
Q ss_pred hhcCCCCcEEEEEEeccCCCc
Q 005820 348 KNTKTTGPVLIHVVTEKGRGY 368 (676)
Q Consensus 348 ~~~~~~~P~lI~v~T~kg~G~ 368 (676)
-. ..+-++||++|.+-.+.
T Consensus 533 ~~--~~g~~viEvkt~r~~~~ 551 (566)
T COG1165 533 WR--RSGTTVIEVKTDRSDGA 551 (566)
T ss_pred cc--CCCcEEEEEecChhHHH
Confidence 64 36789999999876543
No 176
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.88 E-value=0.0035 Score=67.77 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHh
Q 005820 209 KNNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 287 (676)
Q Consensus 209 ~~~vv~viGDGa-~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~ 287 (676)
+..||++-|||. ...|. .++..|...+.|+++||.||.- ..-|..+.+++.+.|+..+.-
T Consensus 151 ~~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~-Y~nTGgQ~S~tTp~Ga~t~ts---------------- 211 (365)
T cd03377 151 KKSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEV-YSNTGGQASKATPLGAVAKFA---------------- 211 (365)
T ss_pred ccceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCcCccC----------------
Confidence 358999999994 46564 5788888888999999999983 334544555666666542110
Q ss_pred hhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCC-CCCHHHHHHHHHHhhhcCCCCcEEEEEEec
Q 005820 288 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 288 ~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 363 (676)
..|.... + -+-..++.++|..|+..+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 212 -----p~Gk~~~----k----------kd~~~ia~a~g~~YVA~~s~~~~~~~~~~~i~eA~~--~~Gps~I~v~sP 267 (365)
T cd03377 212 -----AAGKRTG----K----------KDLGMIAMSYGNVYVAQIALGANDNQTLKAFREAEA--YDGPSLIIAYSP 267 (365)
T ss_pred -----CCCCCCC----C----------cCHHHHHHHcCCCEEEEEecccCHHHHHHHHHHHhc--CCCCEEEEEEcc
Confidence 0011000 0 0112335677888876653 4589999999999987 489999999874
No 177
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.61 E-value=0.04 Score=53.70 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=81.6
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEe-e-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcC-CCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGP 509 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G-~dG~ 509 (676)
+.+.+...-|++.+ -.|++++.+|.|++..+.+|-+. + ..+.+..+...+. .+...+.|++++....+..+ ..+.
T Consensus 32 ~al~~~~~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~-~A~~~~~Pvl~i~g~~~~~~~~~~~ 109 (172)
T PF02776_consen 32 DALEKSPGIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLA-NAYADRIPVLVITGQRPSAGEGRGA 109 (172)
T ss_dssp HHHHHTTTSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHH-HHHHTT-EEEEEEEESSGGGTTTTS
T ss_pred HHhhhhcceeeecc-cCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHh-hcccceeeEEEEecccchhhhcccc
Confidence 44444434577775 89999999999999875554444 3 5555544444443 35667999999885554422 2567
Q ss_pred CCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 510 THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 510 tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
.|+..+...+++.+-.+ .+.+.++.++...++.|++ ...+|++|.+|..
T Consensus 110 ~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 110 FQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 77666667788876544 6666677776666666655 4578999998864
No 178
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.52 E-value=0.0081 Score=74.07 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=48.5
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVS 251 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~e-G~~~EAln~A~~~~~~li~Iv~dN~~~s 251 (676)
.-+||.+++.++|++-+. .+++||++||||.+-. |+- ++-+|.+.+.|++++|.+|....
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tA 527 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVA 527 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCccc
Confidence 346777888888888773 3578999999999965 543 89999999999999999998533
No 179
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.46 E-value=0.12 Score=49.88 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=70.3
Q ss_pred cccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhh-cCCCCEEEEeecCCCcCCCCCCCCChh--hHhHhhcC
Q 005820 447 GIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVD-LQKLPVRFAMDRAGLVGADGPTHCGSF--DVTFMACL 523 (676)
Q Consensus 447 GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a-~~~lpV~iv~~~~G~~G~dG~tH~~~~--d~a~~~~i 523 (676)
..+|..++++|+|..+.|.+|.+.+-.+.+..+...+. .+. ..++||+++....|-.|.+-+.|.... .-..+..+
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~gn~~~~l~-~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~~~~~l~~~ 118 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLGNSINALA-SLNKTYGIPLPILASWRGVYKEKIPAQIPMGRATPKLLDTL 118 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHHHHHHHHH-HHHHcCCCCEEEEEeccCCCCCCCccccchhhhhHHHHHHc
Confidence 57888899999999999998888875555545655554 345 679999999865554343322222211 11222221
Q ss_pred CCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 524 PNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 524 P~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
++......+++++ ..++.|++ ..++|++|..++.
T Consensus 119 -~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 119 -GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred -CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3345566667777 77777764 3458999988764
No 180
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.34 E-value=0.012 Score=72.34 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVS 251 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~e-G~~~EAln~A~~~~~~li~Iv~dN~~~s 251 (676)
.-+||.+++.++|+|-+. .+++||+++|||.+-. |+ -|+-+|.+.+.|++++|.+|..+.
T Consensus 480 ~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vA 540 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVA 540 (1165)
T ss_pred eeccCCcchhhceecccc----CCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCccc
Confidence 456777888888888763 3578999999999965 44 478899999999999999998533
No 181
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.96 E-value=0.029 Score=69.06 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=46.9
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccc-cchHHHHHHhhhcCCCEEEEEECCCCCc
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTA-GQAYEAMNNAGYLDSDMIVILNDNKQVS 251 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~e-G~~~EAln~A~~~~~~li~Iv~dN~~~s 251 (676)
-+||.+++.++|++-+. .+++||+++|||.+.. |+ -|+-+|.+.+.|++++|.+|+.+.
T Consensus 495 ~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avA 554 (1186)
T PRK13029 495 SQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVA 554 (1186)
T ss_pred eccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchh
Confidence 46677777888887663 3578999999999965 44 478899999999999999998533
No 182
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.46 E-value=0.64 Score=45.07 Aligned_cols=116 Identities=11% Similarity=0.006 Sum_probs=77.1
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|+++..+|.|+|.. |...++. +..+.+..++--+. .+...++||+++.............+|......
T Consensus 39 i~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~-~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 116 (164)
T cd07039 39 IEFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLY-DAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLA 116 (164)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHHhcCCCEEEEecCCcccccCCCCCcccCHHH
Confidence 355544 8899999999999987 5433333 36777666655553 456789999998633221111112466666667
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~ 559 (676)
+++.+-.+ ...+.++.++...++.|++. ..+|++|-+|..
T Consensus 117 ~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 117 LFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred HHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 78876654 56677888888888877752 458999988764
No 183
>PRK07586 hypothetical protein; Validated
Probab=95.45 E-value=1.9 Score=49.47 Aligned_cols=203 Identities=16% Similarity=0.063 Sum_probs=112.3
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ --|++++.+|.|+|.. |...+|. ++.+.+..+.--+. .+...+.||+++..........-..+|......
T Consensus 40 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~-~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 117 (514)
T PRK07586 40 MRCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLH-NARRARTPIVNIVGDHATYHRKYDAPLTSDIEA 117 (514)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHH-HHHhcCCCEEEEecCCchhccCCCcccccchhh
Confidence 467666 8899999999999986 5444443 47888766655543 456789999988633221111112244444445
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCCCCcc-ccCCCCCCCCccc--cCce------eEeec
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGNGIG-VELPPGNKGIPLE--VGKG------RILIE 585 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~~~~~-~~~p~~~~~~~~~--~gk~------~vl~e 585 (676)
+++.+-. ......++.++..+++.|++ ...+|++|-+|+.-... ...+......... .... ..+.+
T Consensus 118 ~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~ 196 (514)
T PRK07586 118 LARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVEAAAAALRS 196 (514)
T ss_pred hhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHHHHHHHHHh
Confidence 6665432 24567777777777777765 24689999999853211 0111000000000 0000 12222
Q ss_pred -CCcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEE-------ccccCc-----CcHHHHHHHhccCCEEEEEcC
Q 005820 586 -GERVALLGYGTAVQSCLAASALLES-NGLRLTVAD-------ARFCKP-----LDHALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 586 -G~dv~Iva~Gs~v~~aleAa~~L~~-~Gi~v~VId-------~~~l~P-----~d~e~i~~~~~~~~~vIvvEe 646 (676)
.+-++|++.|.....+.++..+|.+ -|+.|-.-. -+.+-| .-.....+.+++.+.||++--
T Consensus 197 A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~vG~ 271 (514)
T PRK07586 197 GEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVLVGA 271 (514)
T ss_pred cCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEEECC
Confidence 3467778877766666666666654 376643211 111222 112334456778888888763
No 184
>PRK07524 hypothetical protein; Provisional
Probab=95.32 E-value=1.4 Score=50.80 Aligned_cols=116 Identities=20% Similarity=0.155 Sum_probs=78.6
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCC-CCCCCChh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSF 515 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~d-G~tH~~~~ 515 (676)
-|++.+ -.|++++.+|-|+|.. |...+|. +..+.+..+.--| ..+...+.||+++...... .+.+ +..|+...
T Consensus 40 i~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d 117 (535)
T PRK07524 40 IRHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAM-GQAYADSIPMLVISSVNRRASLGKGRGKLHELPD 117 (535)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCChhhcCCCCcccccccc
Confidence 466666 8899999999999986 5443444 4777776666555 3567789999988633222 2322 34555445
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
...+++.+-. ......++.++...++.|++ ...+|++|-+|+.
T Consensus 118 ~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 118 QRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred HHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 5567776543 35677778888888887775 2468999999875
No 185
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.16 E-value=0.27 Score=47.34 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeec--hhHHHHHHH
Q 005820 404 YFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY--SSFMQRAYD 481 (676)
Q Consensus 404 a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~--~~Fl~ra~d 481 (676)
.+.+.|.+.+ . ..+++. |.+.....-.+....|.+|+..|---. .+..|.|++++-.+|++++. ..|+.-.-+
T Consensus 3 ~~~~~l~~~l-~-d~~vv~--d~G~~~~~~~~~~~~~~~~~~~gsmG~-~lp~AiGa~~a~~~~Vv~i~GDG~f~m~~~e 77 (157)
T cd02001 3 AAIAEIIEAS-G-DTPIVS--TTGYASRELYDVQDRDGHFYMLGSMGL-AGSIGLGLALGLSRKVIVVDGDGSLLMNPGV 77 (157)
T ss_pred HHHHHHHHhC-C-CCEEEe--CCCHhHHHHHHhhcCCCCEEeecchhh-HHHHHHHHHhcCCCcEEEEECchHHHhcccH
Confidence 3445555555 3 334443 333222111233356889886332221 23367777766447788874 555433322
Q ss_pred HHHHhhhcC-CCCEEEEe-ecCCCcCCCC--CCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 482 QVVHDVDLQ-KLPVRFAM-DRAGLVGADG--PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 482 qi~~~~a~~-~lpV~iv~-~~~G~~G~dG--~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+..+... ++|+++++ +..++ |.-+ +++....|..-++.--|+..+...++.|+...++.+++ .++|++|-.
T Consensus 78 --l~t~~~~~~~~i~~vV~nN~~~-g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~-~~gp~vi~v 152 (157)
T cd02001 78 --LLTAGEFTPLNLILVVLDNRAY-GSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLA-TTGPTLLHA 152 (157)
T ss_pred --HHHHHHhcCCCEEEEEEeCccc-cccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 2233444 58987776 55443 2111 22322234433333346667778999999999999987 578988754
No 186
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=95.10 E-value=1.9 Score=50.11 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=76.9
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee-EEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p-~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ ..|++++.+|.|+|..--+| +|. ++.+.+..++--|. .+-..+.||+++...... .+. + .+|..+.
T Consensus 47 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~-~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~ 122 (557)
T PRK08199 47 IRVIVC-RQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVH-TAFQDSTPMILFVGQVARDFRER-E-AFQEIDY 122 (557)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHhhcCCCEEEEecCCccccCCC-C-cccccCH
Confidence 466665 88999999999999874444 333 47777766665553 456789999988633222 232 2 2455666
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....++.++..++..|++. ..+|++|.+|+.
T Consensus 123 ~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 123 RRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred HHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 6777765544 34447888888888777762 358999999864
No 187
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=95.03 E-value=0.23 Score=48.30 Aligned_cols=117 Identities=14% Similarity=0.068 Sum_probs=69.3
Q ss_pred hhhhCCCceeeccc--cHHHHHHHHHHHHhcC-CeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCC
Q 005820 435 FLRRFPTRCFDVGI--AEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADG 508 (676)
Q Consensus 435 f~~~~p~R~id~GI--aE~~~v~~A~GlA~~G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG 508 (676)
+.-..|.+++..+. +=-..+++|.|++++. -++++++. ..|+.. ... +..++..++|+++++ ...|+ +...
T Consensus 33 ~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpv~ivv~NN~~~-~~~~ 109 (172)
T cd02004 33 LRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGFS-GME-LETAVRYNLPIVVVVGNNGGW-YQGL 109 (172)
T ss_pred ccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcCC-HHH-HHHHHHcCCCEEEEEEECccc-ccch
Confidence 33456888887643 2233566777888775 46666664 445432 233 345677899977766 44443 1111
Q ss_pred CCC---------C----ChhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 509 PTH---------C----GSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 509 ~tH---------~----~~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
..+ . ...|.. +.++ -|+....-.+.+|+...+++++. .++|++|-.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~al~~a~~-~~~p~liev 169 (172)
T cd02004 110 DGQQLSYGLGLPVTTLLPDTRYDLVAEA-FGGKGELVTTPEELKPALKRALA-SGKPALINV 169 (172)
T ss_pred hhhhhhccCCCceeccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHH-cCCCEEEEE
Confidence 000 0 112322 3333 36777777899999999999986 578988753
No 188
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=94.99 E-value=0.061 Score=67.28 Aligned_cols=114 Identities=19% Similarity=0.295 Sum_probs=77.6
Q ss_pred CeEEEEEcCCc-ccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhh
Q 005820 210 NNVVAVIGDGA-MTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAK 288 (676)
Q Consensus 210 ~~vv~viGDGa-~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~ 288 (676)
..||++-|||. ...|. .++..+...+.|+++||.||.- ..-|..+.+++.+.|+..+.-
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~-Y~nTggQ~S~~tp~g~~t~~~----------------- 1011 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEV-YSNTGGQSSKATPTGAIAKFA----------------- 1011 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcc-cccCCCcCCCCCCCcCccccC-----------------
Confidence 47999999994 46564 4788888889999999999983 334544555666666542110
Q ss_pred hhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCC-CCCHHHHHHHHHHhhhcCCCCcEEEEEEec
Q 005820 289 GVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVD-GHNVDDLVAILEEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 289 ~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vd-Ghd~~~l~~al~~a~~~~~~~P~lI~v~T~ 363 (676)
..|.... | + +-..++.++|..|+..+- |-++.++.+++++|.+ .+||.+|++.+.
T Consensus 1012 ----~~g~~~~----k-----k-----d~~~~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~--~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1012 ----AAGKRTS----K-----K-----DLGMMAMTYGYVYVAQVSMGANMQQTLKAFREAEA--YDGPSIVIAYSP 1067 (1165)
T ss_pred ----CCCCCCC----C-----c-----CHHHHHHHCCCCEEEEEecccCHHHHHHHHHHHHc--CCCCEEEEEECC
Confidence 0011000 0 0 112236678888887765 6689999999999987 489999999875
No 189
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=94.96 E-value=0.046 Score=50.88 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhh--HhHhhcCCC
Q 005820 448 IAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFD--VTFMACLPN 525 (676)
Q Consensus 448 IaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d--~a~~~~iP~ 525 (676)
-+|...+|+++|+.++|.+|..-+-.+.+......+...-...++|..+++.|.|..+++=+.+-+..- ..++.. -+
T Consensus 49 tREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiLe~-~~ 127 (172)
T COG4032 49 TREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLYVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKILEG-LE 127 (172)
T ss_pred cchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHHHHhccchhhhhhccchhhcCCccccccchhhHHHHhh-cC
Confidence 368889999999999999999998777776655544444446799999999999987664444443111 112332 35
Q ss_pred CEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecC
Q 005820 526 MVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 558 (676)
Q Consensus 526 l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r 558 (676)
+..+.|-.|+|...++..+.. ...+|+.+.++-
T Consensus 128 lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~ 163 (172)
T COG4032 128 LPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSP 163 (172)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHcCCceEEEech
Confidence 667899999997776665543 356788887753
No 190
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.52 E-value=0.71 Score=44.77 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=70.3
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|++++.+|-|+|..--+|-+. +..+.+..+.--+. .+...+.||+++............++|..++..
T Consensus 36 i~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~ 113 (162)
T cd07037 36 FRLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV-EAYYSGVPLLVLTADRPPELRGTGANQTIDQVG 113 (162)
T ss_pred ceEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH-HHHhcCCCEEEEECCCCHHhcCCCCCcccchhh
Confidence 355555 78999999999999874344333 37777766655553 457789999998643332221223466666667
Q ss_pred HhhcCCCCEEEecCCHHH------HHHHHHHHHH----hCCCCeEEEec
Q 005820 519 FMACLPNMVVMAPSDEAE------LFHMVATAAA----IDDRPSCFRYP 557 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E------~~~~~~~al~----~~~~P~~ir~~ 557 (676)
+++.+-.+ .....++.+ +..+++.|+. -..+|++|-+|
T Consensus 114 l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 114 LFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred hccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 77765443 333444444 4555555554 34579988654
No 191
>PRK12474 hypothetical protein; Provisional
Probab=94.52 E-value=6.4 Score=45.26 Aligned_cols=200 Identities=17% Similarity=0.092 Sum_probs=112.5
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..++--+. .+...+.||+++...... .+. ..||....
T Consensus 44 i~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~-~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 119 (518)
T PRK12474 44 MRPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLH-NARRAASPIVNIVGDHAVEHLQY--DAPLTSDI 119 (518)
T ss_pred ceEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHH-HHhhcCCCEEEEeccCchhhcCC--CCccccCH
Confidence 377766 8899999999999986 6544444 47787766655443 456689999988633221 122 22444445
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCCCCccccCCC---CCCCCccc-cCce------eE
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGNGIGVELPP---GNKGIPLE-VGKG------RI 582 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~~~~~~~~p~---~~~~~~~~-~gk~------~v 582 (676)
..+++.+-.+ .....++.++..+++.|++ ...+|++|-+|+.-.. .+++. .......+ .... ..
T Consensus 120 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 197 (518)
T PRK12474 120 DGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAW-NEAAYAAQPLRGIGPAPVAAETVERIAAL 197 (518)
T ss_pred HHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhc-ccccCCcCCCCCCCCCCCCHHHHHHHHHH
Confidence 5677755433 4567888888888888875 2347999999975321 11110 00000000 0000 12
Q ss_pred eecC-CcEEEEEechhHHHHHHHHHHHHh-CCCcEEEEE-------ccccC-----cCcHHHHHHHhccCCEEEEEcC
Q 005820 583 LIEG-ERVALLGYGTAVQSCLAASALLES-NGLRLTVAD-------ARFCK-----PLDHALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 583 l~eG-~dv~Iva~Gs~v~~aleAa~~L~~-~Gi~v~VId-------~~~l~-----P~d~e~i~~~~~~~~~vIvvEe 646 (676)
+..- +-++|++.|..-..+.+++.+|.+ -|+.|-.-. -+.+- |+......+++++.+.||++--
T Consensus 198 L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~lG~ 275 (518)
T PRK12474 198 LRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAFLKDVEQLVLVGA 275 (518)
T ss_pred HHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHHHhhCCEEEEECC
Confidence 2233 346666666544555666555544 477643210 11122 2333344556778888888764
No 192
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=94.16 E-value=0.76 Score=53.09 Aligned_cols=116 Identities=15% Similarity=0.037 Sum_probs=79.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ ..|+++..+|.|+|.. |...+|. ++.+.+..++.-|. .+...+.||+++.............||...+..
T Consensus 37 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~-~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 114 (539)
T TIGR02418 37 IELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLA-TANSEGDPVVAIGGQVKRADLLKLTHQSMDNVA 114 (539)
T ss_pred CCEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHH-HHhhcCCCEEEEeCCCcccccccCcccccchhh
Confidence 467766 6999999999999975 6444443 47777766665553 456789999998643322111123478777778
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
+++.+-.+ .....++.++...+..|++ ...+|++|.+|+.
T Consensus 115 ~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 115 LFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred hhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 88876543 4555678888777777765 2357999999875
No 193
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=94.07 E-value=1.1 Score=43.74 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=70.9
Q ss_pred hhhhhCCCceeeccc-cHHH-HHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC-
Q 005820 434 LFLRRFPTRCFDVGI-AEQH-AVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA- 506 (676)
Q Consensus 434 ~f~~~~p~R~id~GI-aE~~-~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~- 506 (676)
.+.-..|.+++..+. .=.+ ++++|.|++++. -++++.+ -..|++-..+ + ..+...++|+++++ ...++ |.
T Consensus 35 ~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~~~~lp~~~iv~NN~~~-~~~ 111 (178)
T cd02014 35 HLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAVKYNLPVIVVVFNNSDL-GFI 111 (178)
T ss_pred hcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHHHhCCCcEEEEEECCch-hHH
Confidence 444456788887543 2222 555667777654 3556665 4666655433 3 44677899987776 44332 10
Q ss_pred -------CCC-CCC--ChhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 507 -------DGP-THC--GSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 507 -------dG~-tH~--~~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
.++ .+. ...|+. +..+ -|+..+...++.|+...++.+++ .++|++|-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~d~~~la~a-~G~~~~~v~~~~el~~~l~~a~~-~~~p~liev 170 (178)
T cd02014 112 KWEQEVMGQPEFGVDLPNPDFAKIAEA-MGIKGIRVEDPDELEAALDEALA-ADGPVVIDV 170 (178)
T ss_pred HHHHHHhcCCceeccCCCCCHHHHHHH-CCCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 011 111 112433 3344 37888888999999999999986 578988754
No 194
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=93.55 E-value=1.2 Score=43.64 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=66.6
Q ss_pred hCCCcee-eccccHH-HHHHHHHHHHhcCCeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCC--CC
Q 005820 438 RFPTRCF-DVGIAEQ-HAVTFAAGLACEGLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADG--PT 510 (676)
Q Consensus 438 ~~p~R~i-d~GIaE~-~~v~~A~GlA~~G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG--~t 510 (676)
..|.|++ +.|..-. ..++++.|++++--+|++++. ..|+.-.-+ + ..+...++|+++++ ...++ |... ..
T Consensus 39 ~~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~e-L-~ta~~~~l~v~ivVlNN~~~-g~~~~~~~ 115 (175)
T cd02009 39 DKTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNG-L-LLGKQEPLNLTIVVINNNGG-GIFSLLPQ 115 (175)
T ss_pred CCCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHH-H-HhccccCCCeEEEEEECCCC-chheeccC
Confidence 4577887 5554322 355677787776456777764 555543322 2 34566789987766 44442 2100 00
Q ss_pred C---------C---ChhhH-hHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 511 H---------C---GSFDV-TFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 511 H---------~---~~~d~-a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+ . ...|. .+.+++ |+......++.|+...++++++ .++|.+|-.
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~lIev 172 (175)
T cd02009 116 ASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALA-QDGPHVIEV 172 (175)
T ss_pred CcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 0 0 01122 233332 5667778899999999999987 678988743
No 195
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.52 E-value=1.3 Score=51.71 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=79.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEee-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|++++.+|.|+|.. |...+|.+ +.+.+..+.--|. .+-..+.||+++...... .+.+ .+|..+.
T Consensus 43 i~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~-~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 118 (574)
T PRK07979 43 IDHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIA-TAYMDSIPLVVLSGQVATSLIGYD--AFQECDM 118 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHH-HHhhcCCCEEEEECCCChhccCCC--CCceecH
Confidence 366665 7899999999999975 76666554 7887766655543 456779999998643332 2322 3555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~~ 560 (676)
..+++.+-.+ .....+++++..+++.|++. ..+|++|.+|...
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 119 VGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred HHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 5667765443 45556888888888888762 4589999998753
No 196
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.44 E-value=0.87 Score=44.01 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=71.7
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCC-----C
Q 005820 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH-----C 512 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH-----~ 512 (676)
|++ ..-.|++++.+|.|++..- +|-+.+ ..+.+..+..-+. .+...+.||+++...... .+.....| +
T Consensus 37 ~~i-~~rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~-~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 37 RWV-GNCNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIA-GAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred eEE-eeCCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHH-HHHHcCCCEEEEecCCCccccccccceeeccccc
Confidence 444 4489999999999999985 444433 5677766666654 457789999998633221 22212222 2
Q ss_pred Chh-hHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecC
Q 005820 513 GSF-DVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPR 558 (676)
Q Consensus 513 ~~~-d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r 558 (676)
..+ ...+++.+-.+ .....++.++..+++.|+. ..++|++|-+||
T Consensus 114 ~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP~ 162 (162)
T cd07038 114 DFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIPR 162 (162)
T ss_pred chHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEccC
Confidence 222 35677765443 4445677777777777765 245899998775
No 197
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.22 E-value=2.1 Score=50.05 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=76.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..+.--| ..+...+.||+++...... .+.+ .+|....
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 135 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGI-ATAYMDSIPMVVISGQVPTAAIGQD--AFQECDT 135 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--CcccccH
Confidence 477776 8999999999999986 5444444 4777776666555 3556789999998643332 2322 3555544
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....++.++..++..|++. ..+|++|-+|+.
T Consensus 136 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 136 VGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred HHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 5566665443 45556677777767666652 358999999875
No 198
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.17 E-value=1.4 Score=51.51 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=78.1
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|++++.+|.|+|.. |.-.+|. +..+.+..++--| ..+...+.||+++....+........+|......
T Consensus 40 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gl-a~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~ 117 (579)
T TIGR03457 40 IRFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAI-AAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLP 117 (579)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHH-HHHhhcCCCEEEEeCCCccccCCCCCCcccchhh
Confidence 466666 7899999999999975 6555543 4777776665554 3556789999998643332111123366666666
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~ 560 (676)
+++.+-.+ .....++.++...++.|++ ...+|++|-+|+..
T Consensus 118 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 118 MFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred hhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 77765443 4555677777777777665 24589999999753
No 199
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.05 E-value=1.8 Score=50.50 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCCceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCCh
Q 005820 439 FPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS 514 (676)
Q Consensus 439 ~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~ 514 (676)
.+-+++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..++--|. .+...+.||+++...... .+.+ .+|..
T Consensus 52 ~~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~-~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~ 127 (571)
T PRK07710 52 CGIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLA-DAMIDSLPLVVFTGQVATSVIGSD--AFQEA 127 (571)
T ss_pred cCCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HHhhcCCCEEEEeccCCccccCCC--Ccccc
Confidence 35688866 9999999999999986 5444434 47777666655543 456779999988633222 2322 24445
Q ss_pred hhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 515 FDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 515 ~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
+...+++.+-.+ .+...++.++..+++.|+.. ..+|++|-+|..
T Consensus 128 d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 128 DIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred chhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 556677765444 34556777777777777662 358999999874
No 200
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.86 E-value=1.3 Score=43.58 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=69.4
Q ss_pred hhhhCCCceeeccc-c-HHHHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCc----
Q 005820 435 FLRRFPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV---- 504 (676)
Q Consensus 435 f~~~~p~R~id~GI-a-E~~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~---- 504 (676)
+.-..|.+|+..+- . =-..+..|.|++++. -++++.+ -..|+...-+ +..++..++|+++++ ...++.
T Consensus 35 ~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~~e--L~ta~~~~lpi~ivV~nN~~~~~~~~ 112 (186)
T cd02015 35 YRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNIQE--LATAAQYNLPVKIVILNNGSLGMVRQ 112 (186)
T ss_pred cccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccHHH--HHHHHHhCCCeEEEEEECCccHHHHH
Confidence 33345888886542 2 123556778877763 3556665 3556644333 344677899987766 444421
Q ss_pred ------CC-CC-CCCCChhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 505 ------GA-DG-PTHCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 505 ------G~-dG-~tH~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+. .. .......|.. +.+++ |+..+.-.+..|+...++.+++ .++|++|-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~liev 171 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALA-SDGPVLLDV 171 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 00 00 1111122333 33443 6777777889999999999986 688988854
No 201
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.86 E-value=1.9 Score=50.29 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=77.7
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..++.-|. .+-..+.||+++...... .+.+ .+|..+.
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla-~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~ 124 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIA-DAMSDSVPLLVFTGQVARAGIGKD--AFQEADI 124 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HHhhcCCCEEEEecccccccCCCC--CccccCh
Confidence 477776 8999999999999986 6444444 47887766665553 456789999998744332 2322 3555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....++.++..++..|++. ..+|++|-+|+.
T Consensus 125 ~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 125 VGITMPITKY-NYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred hchhcCCCce-eEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 5666655443 34556778888888777763 358999999875
No 202
>PRK05858 hypothetical protein; Provisional
Probab=92.84 E-value=2.5 Score=48.92 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=78.4
Q ss_pred CCceeeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhH
Q 005820 440 PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDV 517 (676)
Q Consensus 440 p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~ 517 (676)
.=|++.+ ..|++++.+|-|+|....+|-++ ++.+.+..+.--| ..+...+.||+++.......-.+...+|..+..
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i-~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~ 119 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAM-AAAQFNQSPLVVLGGRAPALRWGMGSLQEIDHV 119 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHH-HHHHhcCCCEEEEeCCCCcccCCCCCCcccchh
Confidence 4577766 89999999999999984444333 3667666665554 356778999998864332211112335666566
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
.+++.+-.. .....++.++...+..|++. ..+|++|.+|+.
T Consensus 120 ~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 120 PFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred hhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 677766543 55667788888887777752 357999999875
No 203
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.80 E-value=0.96 Score=52.91 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=78.6
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..++.-|. .+-..+.||+++.............+|..++..
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~-~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~ 121 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVA-TAYWAHTPVVLVTPQAGTKTIGQGGFQEAEQMP 121 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-HHhhcCCCEEEEeCCCCcccCCCCCCcccchhh
Confidence 466665 8899999999999986 6555544 37777766655543 456789999998733322111112466666666
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~ 560 (676)
+++.+-.. .+...++.++...++.|++ ...+|++|-+|+..
T Consensus 122 l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv 165 (588)
T PRK07525 122 MFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDY 165 (588)
T ss_pred hhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhH
Confidence 77765433 5666788888877777765 34689999999753
No 204
>PRK07064 hypothetical protein; Provisional
Probab=92.76 E-value=2.7 Score=48.60 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=77.7
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCC-CCCCCChh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSF 515 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~d-G~tH~~~~ 515 (676)
=|++.+ ..|+++..+|.|+|.. |...+|. ++.+.+..++.-|. .+...+.||+++...... .+.+ +..|+..+
T Consensus 42 i~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~-~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 119 (544)
T PRK07064 42 IRFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALV-EALTAGTPLLHITGQIETPYLDQDLGYIHEAPD 119 (544)
T ss_pred ccEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHH-HHHhcCCCEEEEeCCCCcccccCCCcccccccC
Confidence 366655 8899999999999986 6444443 47777766665553 456789999988632221 2322 23465555
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
...+++.+-.. .+...++.++..+++.|++. ..+|++|-+|..
T Consensus 120 ~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 120 QLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred HHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 66777766543 45556778877777777652 468999999874
No 205
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.71 E-value=2.3 Score=41.65 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred hhhhCCCceeeccc--cHHHHHHHHHHHHhc-CCeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC--
Q 005820 435 FLRRFPTRCFDVGI--AEQHAVTFAAGLACE-GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA-- 506 (676)
Q Consensus 435 f~~~~p~R~id~GI--aE~~~v~~A~GlA~~-G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~-- 506 (676)
+.-..|.||+..+- +=-..+..|.|++++ .-++++++. ..|+....+ +..+...++|+++++ ...|+ |.
T Consensus 33 ~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m~~~e--L~ta~~~~l~vi~vV~NN~~~-g~~~ 109 (177)
T cd02010 33 YRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMMNSQE--LETAVRLKIPLVVLIWNDNGY-GLIK 109 (177)
T ss_pred CCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhHHHH--HHHHHHHCCCeEEEEEECCcc-hHHH
Confidence 33355788887533 112344567777765 356677763 556544322 334567799988775 44443 21
Q ss_pred ------CCC-CCC--ChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 507 ------DGP-THC--GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 507 ------dG~-tH~--~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
.+. .+. ...|..-++.--|..-+...++.|+...++++++ .++|.+|-..
T Consensus 110 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 168 (177)
T cd02010 110 WKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA-ADGVHVIDCP 168 (177)
T ss_pred HHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 011 111 1123332232236777888999999999999987 6889888654
No 206
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.46 E-value=2.1 Score=49.78 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=77.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee-EEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p-~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++. ...|++++.+|.|+|..-.+| +|. ++.+.+..++--|. .+...+.||+++...... .+. ..+|....
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~-~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 127 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIA-DARLDSIPLVCITGQVPASMIGT--DAFQEVDT 127 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHH-HHHhcCCCEEEEeccCCcccccC--CCccccch
Confidence 47777 489999999999999974454 333 47777766666554 467889999988643332 222 23555545
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
.++++.+-.+ ...-.++.++..+++.|++. ..+|++|-+|..
T Consensus 128 ~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 128 YGISIPITKH-NYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred hhhhhccceE-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5566665443 33445788888888877763 358999999864
No 207
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.37 E-value=2.8 Score=48.85 Aligned_cols=115 Identities=16% Similarity=0.108 Sum_probs=78.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..++--|. .+-..+.||+++...... .+. ..+|....
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla-~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 128 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLA-DAYMDSIPLVVITGQVATPLIGK--DGFQEADV 128 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HHhhcCcCEEEEecCCCcccccC--CCCcccch
Confidence 577766 7999999999999976 6444444 47887766665543 456789999988633222 222 23555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGN 560 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~~ 560 (676)
..+++.+-.+ .+...+++++..+++.|+.. ..+|++|.+|...
T Consensus 129 ~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 129 VGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred hhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 5666655433 45567888898888888763 3589999998753
No 208
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=92.33 E-value=2.3 Score=45.14 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccH---HHHHHHHHHHHhcC-CeeEEeec--hhH
Q 005820 402 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAE---QHAVTFAAGLACEG-LKPFCAIY--SSF 475 (676)
Q Consensus 402 ~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE---~~~v~~A~GlA~~G-~~p~~~t~--~~F 475 (676)
..++.++|.++.....+.+++ .|+|.+. +.| ++++..--- -.++.+|.|++++. -++++++. ++|
T Consensus 13 ~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-------~~~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai~GDG~f 83 (287)
T TIGR02177 13 LSALQRALAELNLDPEQVVVV-SGIGCSA-------KTP-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVVGGDGDL 83 (287)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCCccc-------ccC-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEEeCchHH
Confidence 345666776654333454444 4777544 123 555543221 33566888888774 46667663 445
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEe-ecCC--CcC-CCCCCC----------CC----hhhH---hHhhcCCCCEEEecCCH
Q 005820 476 MQRAYDQVVHDVDLQKLPVRFAM-DRAG--LVG-ADGPTH----------CG----SFDV---TFMACLPNMVVMAPSDE 534 (676)
Q Consensus 476 l~ra~dqi~~~~a~~~lpV~iv~-~~~G--~~G-~dG~tH----------~~----~~d~---a~~~~iP~l~V~~Psd~ 534 (676)
+......+. .++..++||++++ +..+ +++ ..-++- .+ ..++ ++.....-.-.....++
T Consensus 84 ~~mg~~eL~-tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~ 162 (287)
T TIGR02177 84 YGIGGNHFV-AAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDV 162 (287)
T ss_pred HhccHHHHH-HHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCH
Confidence 434444443 4577899988776 3332 222 111110 00 0122 22222211112336899
Q ss_pred HHHHHHHHHHHHhCCCCeEEEe
Q 005820 535 AELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 535 ~E~~~~~~~al~~~~~P~~ir~ 556 (676)
.|+...++.|++ .++|++|-.
T Consensus 163 ~eL~~ai~~Al~-~~GpslIeV 183 (287)
T TIGR02177 163 AHLKEIIKEAIN-HKGYALVDI 183 (287)
T ss_pred HHHHHHHHHHHh-CCCCEEEEE
Confidence 999999999997 688988754
No 209
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.27 E-value=2.6 Score=49.14 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=78.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
-|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..++.-| ..+...+.||+++..........-..+|..+...
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGI-ATAYMDSIPMVVLSGQVPSTLIGEDAFQETDMVG 120 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 466665 8999999999999976 5434433 4777776666555 3556789999998643322111112366665666
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
+++.+-.+ .....++.++..+++.|+.. ..+|++|.+|..
T Consensus 121 l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 121 ISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred hhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77766553 45566788888887777653 358999999885
No 210
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=92.20 E-value=2.3 Score=41.95 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEeccccCccchhhhh-hhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeec--hhHHHHH
Q 005820 403 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFL-RRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY--SSFMQRA 479 (676)
Q Consensus 403 ~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~-~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~--~~Fl~ra 479 (676)
+++.++|.+.+. ..+++. |.|.... ..+. ...|.+++..|--=. .+.+|.|++++--+|++++. ..|+.-.
T Consensus 2 ~~~~~~l~~~l~--d~iiv~--d~G~~~~-~~~~~~~~~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE--DELVVS--NIGVPSK-ELYAIRDRPLNFYMLGSMGL-ASSIGLGLALATDRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC--CCEEEe--cCCHhHH-HHHhhhcCCCCeeecccccc-HHHHHHHHHHcCCCcEEEEEcchHHHhhh
Confidence 345556666663 344433 4443221 1222 235778886442222 34577777776456777764 5555332
Q ss_pred HHHHHHhhhcCC-CCEEEEe-ecCCCcCCCC--CCCC-ChhhHh-HhhcCCCCEEEe-cCCHHHHHHHHHHHHHhCCCCe
Q 005820 480 YDQVVHDVDLQK-LPVRFAM-DRAGLVGADG--PTHC-GSFDVT-FMACLPNMVVMA-PSDEAELFHMVATAAAIDDRPS 552 (676)
Q Consensus 480 ~dqi~~~~a~~~-lpV~iv~-~~~G~~G~dG--~tH~-~~~d~a-~~~~iP~l~V~~-Psd~~E~~~~~~~al~~~~~P~ 552 (676)
.. +..++..+ +|+++++ ...|+ |.-+ ++.. ...|.. +.+++ |+.-.. ..+++|+...++ +++ .++|+
T Consensus 76 -~e-l~ta~~~~~~pv~~vV~NN~~y-g~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al~-a~~-~~~p~ 149 (181)
T TIGR03846 76 -GV-LPTIAAESPKNLILVILDNGAY-GSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDALK-ALA-MKGPT 149 (181)
T ss_pred -hH-HHHHHHhCCCCeEEEEEeCCcc-ccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHHH-HHc-CCCCE
Confidence 22 33456566 5987776 44443 2222 1111 112332 33333 555555 789999999997 765 67898
Q ss_pred EEEec
Q 005820 553 CFRYP 557 (676)
Q Consensus 553 ~ir~~ 557 (676)
+|-..
T Consensus 150 li~v~ 154 (181)
T TIGR03846 150 FIHVK 154 (181)
T ss_pred EEEEE
Confidence 87553
No 211
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=92.17 E-value=2.9 Score=48.60 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=78.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|++++.+|.|+|.. |.-.++. ++.+.+..++.-|. .+...+.||+++.............+|..+...
T Consensus 40 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~-~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~ 117 (558)
T TIGR00118 40 IEHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIA-TAYMDSIPMVVFTGQVPTSLIGSDAFQEADILG 117 (558)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHHhcCCCEEEEecCCCccccCCCCCcccChhh
Confidence 366666 8999999999999975 5444444 47777766665553 556789999998633222111112356555566
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
+++.+-.+ .....++.++..++..|+.. ..+|++|-+|+.
T Consensus 118 ~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 118 ITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred hhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 77765443 44456788888888888762 358999999875
No 212
>PRK06163 hypothetical protein; Provisional
Probab=92.15 E-value=7 Score=39.31 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred hCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC-CCCC--
Q 005820 438 RFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA-DGPT-- 510 (676)
Q Consensus 438 ~~p~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~-dG~t-- 510 (676)
..|.+++.+| +=-..+.+|.|++++. -++++++. ..|+.-.-+ +...+.+.++|+++++ ...++ |. .+..
T Consensus 48 ~~~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~GDG~f~m~~~e-L~Ta~~~~~lpi~ivV~NN~~y-g~~~~~~~~ 124 (202)
T PRK06163 48 QRPQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEGDGSLLMQLGA-LGTIAALAPKNLTIIVMDNGVY-QITGGQPTL 124 (202)
T ss_pred cCCCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEcchHHHHHHHH-HHHHHHhcCCCeEEEEEcCCch-hhcCCccCC
Confidence 3577777433 1222334677777663 45666664 445544322 3222234567877666 44443 21 1111
Q ss_pred CCChhhHh-HhhcCCCCE-EEecCCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 511 HCGSFDVT-FMACLPNMV-VMAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 511 H~~~~d~a-~~~~iP~l~-V~~Psd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
+....|.. +.+++ |+. .+.-.+.+|+...++++++ .++|++|-..
T Consensus 125 ~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIeV~ 171 (202)
T PRK06163 125 TSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALS-GPGPSFIAVR 171 (202)
T ss_pred CCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 11112333 33443 665 5677899999999999986 5889887553
No 213
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.95 E-value=3.2 Score=48.66 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=91.0
Q ss_pred HHHHHHHHHcC--CCEEEEeccccCccch---hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHH
Q 005820 406 AEALIAEAEVD--KDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQR 478 (676)
Q Consensus 406 ~~aL~~~~~~d--~~iv~i~aD~~gs~~l---~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~r 478 (676)
++.|.+.+++. +.|+.+ .|+..+ +.+.+.-.=|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+..
T Consensus 14 a~~l~~~L~~~GV~~vFGv----pG~~~~~l~dal~~~~~i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 14 AEMVVQALKDQGVEHIFGY----PGGAVLPIYDEIFQQDDIQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred HHHHHHHHHHCCCCEEEEc----cCcchHHHHHHHhhcCCCeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 55566655543 234433 333322 34433223577777 8999999999999965 6555554 47777766
Q ss_pred HHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCe
Q 005820 479 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPS 552 (676)
Q Consensus 479 a~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~ 552 (676)
+.--| ..+...+.||+++...... .|. ..+|..+...+++.+-.+ .+...++.++..++..|++. ..+|+
T Consensus 89 ~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV 164 (595)
T PRK09107 89 AVTPL-QDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPV 164 (595)
T ss_pred HHHHH-HHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceE
Confidence 66554 3456789999988643322 232 245555555566654332 45567888888888887763 35899
Q ss_pred EEEecCCC
Q 005820 553 CFRYPRGN 560 (676)
Q Consensus 553 ~ir~~r~~ 560 (676)
+|-+|+.-
T Consensus 165 ~l~iP~Dv 172 (595)
T PRK09107 165 VVDIPKDV 172 (595)
T ss_pred EEecCCCh
Confidence 99998753
No 214
>PRK08322 acetolactate synthase; Reviewed
Probab=91.74 E-value=3.1 Score=48.12 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=77.3
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ ..|++++.+|.|+|.. |...+|. +..+.+..++--| ..+...+.||+++...... .+. ..||....
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i-~~A~~~~~Pll~i~g~~~~~~~~~--~~~q~~d~ 114 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGV-AYAQLGGMPMVAITGQKPIKRSKQ--GSFQIVDV 114 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHH-HHHhhcCCCEEEEeccccccccCC--CccccccH
Confidence 466665 8999999999999987 5444444 3677776666555 3567789999988633221 222 13555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-. ..+...++.++..++..|++. ..+|++|-+|+.
T Consensus 115 ~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 115 VAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred HHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 567776544 356777888888888877762 357999999875
No 215
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=91.64 E-value=3 Score=44.07 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHHHH
Q 005820 402 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQR 478 (676)
Q Consensus 402 ~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~t~--~~Fl~r 478 (676)
..++.++|.++..+.++.+++ .|.|.+..+..+.+ -..++... ..++.+|.|++++. -++++++. ++++.-
T Consensus 19 l~al~~al~~l~~~~~~~ivv-sdiGc~~~~~~~~~---~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~GDG~~f~i 92 (279)
T PRK11866 19 LEALRKALAELGIPPENVVVV-SGIGCSSNLPEFLN---TYGIHGIH--GRVLPIATGVKWANPKLTVIGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHhcCCCCCEEEE-ECCchhhhhhhhcc---CCCccccc--ccHHHHHHHHHHHCCCCcEEEEECChHHHHc
Confidence 455666665543333454433 46665543222221 11222222 45667788888763 45666663 333455
Q ss_pred HHHHHHHhhhcCCCCEEEEe-ecCCC--cC-CCCCCC--------CC--h----hhH-hHhh--cCCCCEEEecCCHHHH
Q 005820 479 AYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPTH--------CG--S----FDV-TFMA--CLPNMVVMAPSDEAEL 537 (676)
Q Consensus 479 a~dqi~~~~a~~~lpV~iv~-~~~G~--~G-~dG~tH--------~~--~----~d~-a~~~--~iP~l~V~~Psd~~E~ 537 (676)
++..+. .++..++|+++++ +...+ +| ..-++- .. . .|+ .+.. ..+.+....+.++.|+
T Consensus 93 g~~eL~-tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l 171 (279)
T PRK11866 93 GLGHLP-HAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL 171 (279)
T ss_pred cHHHHH-HHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH
Confidence 555554 4678899987776 43332 32 111110 00 0 122 2222 2333445666999999
Q ss_pred HHHHHHHHHhCCCCeEEEe
Q 005820 538 FHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 538 ~~~~~~al~~~~~P~~ir~ 556 (676)
...++.|++ .++|++|-.
T Consensus 172 ~~~l~~Al~-~~Gps~I~v 189 (279)
T PRK11866 172 KEIIKEAIK-HKGFSFIDV 189 (279)
T ss_pred HHHHHHHHh-CCCCEEEEE
Confidence 999999997 689988854
No 216
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=91.63 E-value=3.9 Score=42.12 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=53.7
Q ss_pred CeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCC-----------------------ChhhHh-
Q 005820 465 LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC-----------------------GSFDVT- 518 (676)
Q Consensus 465 ~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~-----------------------~~~d~a- 518 (676)
-+|++++. +.|++..+..+. .+...++||++++-..+.+|.-|..++ ..-|+.
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~-ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 158 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALS-GAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPL 158 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHH-HHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHH
Confidence 57888874 444455566654 567889998887743332231111111 111222
Q ss_pred HhhcCCCCE---EEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 519 FMACLPNMV---VMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 519 ~~~~iP~l~---V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+.+++ |+. .+...++.|+...++.+++ .++|++|-.
T Consensus 159 iA~a~-G~~~~~~~~v~~~~el~~al~~a~~-~~gP~lIev 197 (235)
T cd03376 159 IMAAH-NIPYVATASVAYPEDLYKKVKKALS-IEGPAYIHI 197 (235)
T ss_pred HHHHc-CCcEEEEEcCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 33332 443 3568999999999999987 578988754
No 217
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.59 E-value=3.1 Score=48.55 Aligned_cols=114 Identities=14% Similarity=0.125 Sum_probs=77.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..+.--| ..+...+.||+++...... .+. | .+|..+.
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gi-a~A~~~~~Pvl~i~G~~~~~~~~~-~-~~q~~d~ 118 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGI-ATAYMDSIPMVVLSGQVPSNLIGN-D-AFQECDM 118 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHH-HHHhhcCCCEEEEecCCCccccCC-C-CCcccch
Confidence 467776 8999999999999986 6555544 4777776665554 3456779999988643322 222 2 3555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....+++++...++.|++. ..+|++|.+|..
T Consensus 119 ~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 119 IGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred hHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 5666655333 45566788888888888762 458999999875
No 218
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=91.55 E-value=3.9 Score=47.76 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=75.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|++++.+|-|+|.. |.-.+|. ++.+.+..+.--+ ..+-..+.||+++.........+..++|..+...
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~ 116 (575)
T TIGR02720 39 IHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGL-YDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENP 116 (575)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHH-HHHhhcCCCEEEEecCCccccCCCCCcceechhh
Confidence 466666 7899999999999976 5444444 4777776666554 3456789999998643332222334466666566
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~ 560 (676)
+++.+-.+ .....++.++...+..|++ ...+|++|-+|+..
T Consensus 117 ~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 117 IYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred hhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 77755332 2344555555555554443 26799999999753
No 219
>PRK08611 pyruvate oxidase; Provisional
Probab=91.39 E-value=4.3 Score=47.41 Aligned_cols=114 Identities=14% Similarity=0.060 Sum_probs=76.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++. ...|++++.+|.|+|.. |...+|. ++.+.+..++--+. .+...+.||+++...... .+. ..+|..+.
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla-~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~ 119 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLY-DAKMDHVPVLALAGQVTSDLLGT--DFFQEVNL 119 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHH-HHhhcCCCEEEEecCCcccccCC--CCccccCH
Confidence 46666 48899999999999975 5444433 37777766665553 556789999998743332 222 22555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....++.++..++..|++ ...+|++|-+|..
T Consensus 120 ~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 120 EKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred HHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 5677766443 4556677777777776654 2468999999875
No 220
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.32 E-value=4.5 Score=47.13 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=71.7
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|+++..+|-|+|...-+|-+++ ..+....+..-| ..+...+.||+++...... .|. ..+|...+
T Consensus 42 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi-~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~ 117 (574)
T PRK09124 42 IEWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHP 117 (574)
T ss_pred CcEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHH-HHHhhcCCCEEEEecCCccccCCC--CCccccCh
Confidence 355554 689999999999999743444443 666665555544 3556789999988632221 232 23666666
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....+++++...++.|+. ...+|++|-+|+.
T Consensus 118 ~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~D 162 (574)
T PRK09124 118 QELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGD 162 (574)
T ss_pred hhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 6777755433 3345566665555555543 2458999999864
No 221
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=91.22 E-value=5.8 Score=46.44 Aligned_cols=115 Identities=10% Similarity=-0.020 Sum_probs=76.4
Q ss_pred CceeeccccHHHHHHHHHHHHhcC-CeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEG-LKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSF 515 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~ 515 (676)
-|++.+ --|++++.+|-|+|... .+|-++ ++.+.+..++--|. .+...+.||+++...... .+. ..+|..+
T Consensus 42 i~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla-~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D 117 (588)
T TIGR01504 42 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLY-SASADSIPILCITGQAPRARLHK--EDFQAVD 117 (588)
T ss_pred CcEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHH-HHhhcCCCEEEEecCCCccccCC--CcccccC
Confidence 366654 67999999999999853 444333 47777665655543 456789999998643332 222 2355555
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 560 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~~ 560 (676)
...+++.+-.+ .....++.++..+++.|++ ...+|++|-+|+.-
T Consensus 118 ~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 118 IAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 55677765443 4555678888888888876 24479999999753
No 222
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.22 E-value=4.3 Score=47.21 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=79.1
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..+..-+. .+...+.||+++...... .+. ..+|..+.
T Consensus 42 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla-~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 117 (563)
T PRK08527 42 FKHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLA-TAYMDSIPLVLISGQVPNSLIGT--DAFQEIDA 117 (563)
T ss_pred CeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHH-HHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 366665 8999999999999975 6444444 47777766665553 556789999988643322 222 23565656
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
.++++.+-.+ .....++.++..+++.|++. ..+|++|-+|..
T Consensus 118 ~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 118 VGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred hhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5677765433 45678899999999988863 347999999864
No 223
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.90 E-value=5.2 Score=46.63 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=77.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ -.|++++.+|-|+|.. |...++. +..+.+..++--|. .+...+.||+++..........-..+|..+...
T Consensus 43 i~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~-~A~~~~~Pvlvi~G~~~~~~~~~~~~q~~d~~~ 120 (574)
T PRK06882 43 IEHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIA-TAYTDSVPLVILSGQVPSNLIGTDAFQECDMLG 120 (574)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHH-HHhhcCCCEEEEecCCCccccCCCcccccchhh
Confidence 366666 8999999999999986 5444433 47777766665553 556789999988633222111112355555556
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
+++.+-.+ .....++.++..++..|++. ..+|++|-+|..
T Consensus 121 l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 121 ISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred hhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 77665432 45667888888888877762 358999999875
No 224
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=90.86 E-value=4.9 Score=47.29 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=78.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=+++.+ -.|++++.+|.|+|.. |...+|. +..+.+..++--| ..+...++||+++...... .+. ..+|..+.
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~PllvI~G~~~~~~~~~--~~~q~~d~ 145 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPI-ADANMDSVPVVAITGQVGRGLIGT--DAFQEADI 145 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC--CcCcccch
Confidence 466665 8999999999999986 6544443 4777776665554 3567789999998743332 222 23555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .+...++.++..+++.|+.. ..+|++|-+|..
T Consensus 146 ~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 146 VGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred hhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 5666655443 44567888888888888762 358999999875
No 225
>PLN02573 pyruvate decarboxylase
Probab=90.85 E-value=4.3 Score=47.47 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=70.9
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCCh---
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS--- 514 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~--- 514 (676)
+++.+ -.|++++.+|-|+|.. | .++|. ++.+.+..+..-+. .+...+.||+++...... .+.++..|+..
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gla-~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 132 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 132 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHHH-HHHHhCCCEEEEECCCChhhhhcCceeeeecCCC
Confidence 45544 7899999999999975 7 66655 47777655555543 445679999998643222 24444455432
Q ss_pred ---hhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC
Q 005820 515 ---FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (676)
Q Consensus 515 ---~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~ 560 (676)
.+..+++.+-.+ .....+++++..+++.|++ ...+|++|-+|+.-
T Consensus 133 ~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 133 DFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred ChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 223455543322 3444556555555555544 24689999998753
No 226
>PRK11269 glyoxylate carboligase; Provisional
Probab=90.77 E-value=5.1 Score=46.89 Aligned_cols=122 Identities=10% Similarity=0.033 Sum_probs=79.6
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc--CCeeEE-eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE--GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD 507 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~--G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~d 507 (676)
+.+.+...=|++.+ ..|++++.+|-|+|.. |...+| .|+.+.+..+.--+ ..+...+.||+++...... .+.
T Consensus 35 dal~~~~~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~- 111 (591)
T PRK11269 35 SAMRKHGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGL-YSASADSIPILCITGQAPRARLHK- 111 (591)
T ss_pred HHHhhcCCCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCC-
Confidence 44533222477777 7999999999999975 433333 35777765555544 3556789999988633222 222
Q ss_pred CCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 508 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 508 G~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+|..+...+++.+-.+ .....++.++..+++.|++. ..+|++|-+|+.
T Consensus 112 -~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 112 -EDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred -CcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 235655566677754333 45567788888888887762 347999999875
No 227
>PRK08266 hypothetical protein; Provisional
Probab=90.72 E-value=4.9 Score=46.48 Aligned_cols=116 Identities=19% Similarity=0.134 Sum_probs=76.8
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCC-CCCCCChh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD-GPTHCGSF 515 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~d-G~tH~~~~ 515 (676)
=|++.+ ..|++++.+|.|+|.. |...+|. +..+.+..++.-+ ..+...+.||+++...... .+.+ +.+|+...
T Consensus 44 i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi-~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d 121 (542)
T PRK08266 44 IRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAAL-LTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPD 121 (542)
T ss_pred CeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHHhhCCCEEEEecCCChhhccCCCCcceeccc
Confidence 566666 8999999999999986 5433333 4777776666555 3567889999988632221 2322 23444445
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
...+++.+-.+ .....+++++..+++.|++ ...+|++|-+|..
T Consensus 122 ~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 122 QLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred HhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 66777766543 4555667777777776665 2468999999864
No 228
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.64 E-value=4.6 Score=46.74 Aligned_cols=114 Identities=18% Similarity=0.127 Sum_probs=77.5
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..++--+. .+...+.||+++...... .+. ..+|..+.
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~-~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~ 114 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLA-DALLDSVPVVAITGQVSSPLIGT--DAFQEIDV 114 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HHhhcCCCEEEEecCCCccccCC--CCCcccch
Confidence 466665 8999999999999986 6444444 47777766665553 556789999998643332 232 23565555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-... +...++.++..+++.|++. ..+|++|-+|+.
T Consensus 115 ~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (548)
T PRK08978 115 LGLSLACTKHS-FLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKD 160 (548)
T ss_pred hccccCceeeE-EEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 56777665543 3335788888888888762 358999999874
No 229
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=90.57 E-value=5.3 Score=46.07 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=74.5
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe-e-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|++++.+|.|+|...-+|-+. + ..+.+..++.-|. .+...+.||+++...... .+ .++.++....
T Consensus 49 i~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia-~A~~~~~Pvl~i~g~~~~~~~~-~~~~~~~~d~ 125 (530)
T PRK07092 49 FRYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLF-TAFKNHTPLVITAGQQARSILP-FEPFLAAVQA 125 (530)
T ss_pred CCEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHH-HHhhcCCCEEEEecCCcccccC-ccchhcccCH
Confidence 467744 89999999999999964344444 3 4555555555443 456789999988643332 12 2333333344
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+.. ...++.++..++..|++. ..+|++|-+|+.
T Consensus 126 ~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 126 AELPKPYVKWSI-EPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred HHhhccccccee-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 567777665533 447788888888877762 357999999864
No 230
>PLN02470 acetolactate synthase
Probab=90.55 E-value=4 Score=47.76 Aligned_cols=114 Identities=16% Similarity=0.122 Sum_probs=78.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|++++.+|.|+|.. |...+|. ++.+.+..++--|. .+-..+.||+++...... .+. ..+|....
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia-~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~ 127 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLA-DALLDSVPLVAITGQVPRRMIGT--DAFQETPI 127 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HHHhcCCcEEEEecCCChhhcCC--CcCcccch
Confidence 567777 8899999999999976 6444443 47888766666553 556789999998633222 122 22555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .+...+++++..+++.|++. ..+|++|-+|..
T Consensus 128 ~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 128 VEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred hhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 5666654433 34456888888888888763 358999999875
No 231
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.52 E-value=3.2 Score=48.67 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=88.0
Q ss_pred HHHHHHHHHcC--CCEEEEeccccCccc---hhhhhhhCC-CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHH
Q 005820 406 AEALIAEAEVD--KDVVAIHAAMGGGTG---LNLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQ 477 (676)
Q Consensus 406 ~~aL~~~~~~d--~~iv~i~aD~~gs~~---l~~f~~~~p-~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ 477 (676)
+++|.+.+++. ..|+.+. |++. ++.+.+..+ =|++.+ -.|++++.+|-|+|.. |...+|. ++.+.+.
T Consensus 6 a~~l~~~L~~~GV~~vFGvp----G~~~~~l~dal~~~~~~i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 80 (597)
T PRK08273 6 ADFILERLREWGVRRVFGYP----GDGINGLLGALGRADDKPEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAI 80 (597)
T ss_pred HHHHHHHHHHCCCCEEEEeC----CCchHHHHHHHHhccCCCeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 45555555543 2355443 3332 234443222 466666 8899999999999986 6544444 4788876
Q ss_pred HHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCe
Q 005820 478 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPS 552 (676)
Q Consensus 478 ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~ 552 (676)
.+..-| ..+...+.||+++...... .+.+ .+|..+...+++.+-.-......++.++...++.|++ ...+|+
T Consensus 81 n~~~gi-~~A~~d~vPvl~I~G~~~~~~~~~~--~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV 157 (597)
T PRK08273 81 HLLNGL-YDAKLDHVPVVAIVGQQARAALGGH--YQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVT 157 (597)
T ss_pred HHHHHH-HHHHhcCCCEEEEecCCchhhcCCC--CCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 666555 3556789999988633322 2332 3554444566665431124456666666666666654 245899
Q ss_pred EEEecCCC
Q 005820 553 CFRYPRGN 560 (676)
Q Consensus 553 ~ir~~r~~ 560 (676)
+|.+|...
T Consensus 158 ~i~iP~Dv 165 (597)
T PRK08273 158 AVILPNDV 165 (597)
T ss_pred EEEeCcch
Confidence 99998753
No 232
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.34 E-value=4.8 Score=47.02 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=74.4
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCee-EEee-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKP-FCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p-~~~t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ --|++++.+|-|+|..-.+| +|.+ ..+.+..++--+ ..+-..+.||+++...... .+. | .+|...+
T Consensus 42 i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl-~~A~~~~~Pvl~I~G~~~~~~~~~-~-~~Qe~d~ 117 (578)
T PRK06546 42 IEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGL-YDAHRSGAPVLAIASHIPSAQIGS-G-FFQETHP 117 (578)
T ss_pred CeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCC-C-CccccCh
Confidence 456666 78999999999999974444 4433 566666655554 3556789999998643222 122 2 3555555
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
..+++.+-. ..+...++.++..++..|++ ...+|++|-+|..
T Consensus 118 ~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 118 DRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred hhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 566665433 24666777777776666655 3468999999864
No 233
>PRK08617 acetolactate synthase; Reviewed
Probab=90.22 E-value=2.2 Score=49.44 Aligned_cols=114 Identities=15% Similarity=0.057 Sum_probs=78.3
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++.+ ..|++++.+|.|+|.. |.-.+|. ++.+.+..++--+. .+...+.||+++...... .+. ..||....
T Consensus 43 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~-~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~ 118 (552)
T PRK08617 43 PELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLV-TATAEGDPVVAIGGQVKRADRLK--RTHQSMDN 118 (552)
T ss_pred CCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHH-HHhhcCCCEEEEecCCcccccCC--CCccccch
Confidence 566666 8999999999999987 4434433 47777766655553 556789999988643222 232 24677766
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .+...++.++..++..|++. ..+|++|-+|..
T Consensus 119 ~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 119 VALFRPITKY-SAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred hhhhhhhcce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 6777876543 45556777877777777762 357999999865
No 234
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=90.02 E-value=1.4 Score=44.16 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=66.3
Q ss_pred hhhhCCCceeeccccHHHHH----HHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCc--
Q 005820 435 FLRRFPTRCFDVGIAEQHAV----TFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLV-- 504 (676)
Q Consensus 435 f~~~~p~R~id~GIaE~~~v----~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~-- 504 (676)
+.-+.|.+|+..+- .+.+ ++|.|++++. -++++++ -..|+.-. |-+..+...++|+++++ +..|+.
T Consensus 33 ~~~~~~~~~~~~~~--~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~ 108 (205)
T cd02003 33 WRARTPGGYHLEYG--YSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCI 108 (205)
T ss_pred CCcCCCCcEEcCCC--cchhhhHHHHHHHHHHhCCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHH
Confidence 33356888886532 3334 4666666553 4566666 35565422 22334567799976665 554431
Q ss_pred -------CCC--CCCCC-------------ChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 505 -------GAD--GPTHC-------------GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 505 -------G~d--G~tH~-------------~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+.. +.... ...|..-++.--|+......++.|+...++.+++ .++|++|-.
T Consensus 109 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~~-~~gp~lIeV 181 (205)
T cd02003 109 NNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAKA-SDRTTVIVI 181 (205)
T ss_pred HHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 100 00000 0123332222236777778999999999999986 588988744
No 235
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=90.01 E-value=6 Score=41.85 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCCEEEEeccccCccchhhhhhhC-CCceeeccccHHHHHHHHHHHHhc-CCeeEEee--chhHHHHHH
Q 005820 405 FAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI--YSSFMQRAY 480 (676)
Q Consensus 405 ~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~t--~~~Fl~ra~ 480 (676)
+.++|.+.....++++++ .|+|.+.. +..-+ ++++. +.. ..++.+|.|++++ --++++++ -.+|+.-.
T Consensus 31 v~~al~e~~~~~~d~ivv-sdiGc~~~---~~~~~~~~~~~-~~~--G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g- 102 (277)
T PRK09628 31 IIRAIDKLGWNMDDVCVV-SGIGCSGR---FSSYVNCNTVH-TTH--GRAVAYATGIKLANPDKHVIVVSGDGDGLAIG- 102 (277)
T ss_pred HHHHHHHhcCCCCCEEEE-eCcCHHHH---hhccCCCCcee-ecc--ccHHHHHHHHHHHCCCCeEEEEECchHHHHhh-
Confidence 445666553233455433 46664321 11112 33443 222 2677788888886 23556665 34454322
Q ss_pred HHHHHhhhcCCCCEEEEeecCCCcCCCCCCC--------------C----ChhhHhHhhcCCCCEE---EecCCHHHHHH
Q 005820 481 DQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--------------C----GSFDVTFMACLPNMVV---MAPSDEAELFH 539 (676)
Q Consensus 481 dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH--------------~----~~~d~a~~~~iP~l~V---~~Psd~~E~~~ 539 (676)
.+-.-.++..++||++++-.-+..|.-+.+. . ...|+.-++.--|..- ....++.|+..
T Consensus 103 ~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~ 182 (277)
T PRK09628 103 GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEK 182 (277)
T ss_pred HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHH
Confidence 2223346788999888774333222211000 0 1112222222224443 57899999999
Q ss_pred HHHHHHHhCCCCeEEEec
Q 005820 540 MVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 540 ~~~~al~~~~~P~~ir~~ 557 (676)
+++.|++ .++|++|-..
T Consensus 183 al~~Al~-~~Gp~lIeV~ 199 (277)
T PRK09628 183 LLVKGFS-HKGFSFFDVF 199 (277)
T ss_pred HHHHHHh-CCCCEEEEEc
Confidence 9999997 6899988553
No 236
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=90.01 E-value=1.8 Score=50.22 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=74.9
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ -.|+++..+|.|+|..-.+|-++ +..+.+..++--+. .+-..+.||+++...... .+. .++|..+.
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~-~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~ 115 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLY-DAKMDHAPVIALTGQVESDMIGH--DYFQEVNL 115 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHH-HHHhcCCCEEEEecCCCccccCC--Ccccccch
Confidence 455554 88999999999999974444443 47777766655553 556789999988633221 222 23555556
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh---CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~---~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....++.++..+++.|++. ..+|++|.+|..
T Consensus 116 ~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 116 TKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred hhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 6677765443 45566667777777666552 469999999864
No 237
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=90.00 E-value=1.3 Score=44.26 Aligned_cols=120 Identities=15% Similarity=0.090 Sum_probs=70.5
Q ss_pred hhhhhCCCceeeccc-cHHH-HHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC-
Q 005820 434 LFLRRFPTRCFDVGI-AEQH-AVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA- 506 (676)
Q Consensus 434 ~f~~~~p~R~id~GI-aE~~-~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~- 506 (676)
.+.-..|.+|++.+- .=.+ .+..|.|++++. -++++++ -..|+...-| +..+...++|+++++ ...|+ |.
T Consensus 41 ~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GDG~f~m~~~e--L~Ta~~~~lpviivV~NN~~y-g~~ 117 (202)
T cd02006 41 MLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGDYDFQFMIEE--LAVGAQHRIPYIHVLVNNAYL-GLI 117 (202)
T ss_pred hcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeChHhhccHHH--HHHHHHhCCCeEEEEEeCchH-HHH
Confidence 344456889987642 2122 455777777663 4667776 4556544422 334677899987776 44443 21
Q ss_pred --------CC----CCCCC---------hhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 507 --------DG----PTHCG---------SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 507 --------dG----~tH~~---------~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
++ ..+.. ..|..-++.--|..-+.-.++.|+...++++++ ..++|++|-.
T Consensus 118 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev 191 (202)
T cd02006 118 RQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEA 191 (202)
T ss_pred HHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence 00 00110 123322222236778888999999999999985 2578988754
No 238
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=89.92 E-value=4.4 Score=39.80 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCCEEEEeccccCccc-hhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEeec--hhHHHHHH
Q 005820 404 YFAEALIAEAEVDKDVVAIHAAMGGGTG-LNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY--SSFMQRAY 480 (676)
Q Consensus 404 a~~~aL~~~~~~d~~iv~i~aD~~gs~~-l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~--~~Fl~ra~ 480 (676)
.+.+.|.+.+. ..+++ .|.+.... +-.+ ...|.+++..|.-= ..+..|.|++++..++++++. ..|+.- .
T Consensus 3 ~~~~~l~~~~~--~~~vv--~d~G~~~~~~~~~-~~~~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i~GDG~f~m~-~ 75 (179)
T cd03372 3 DAIKTLIADLK--DELVV--SNIGFPSKELYAA-GDRPLNFYMLGSMG-LASSIGLGLALAQPRKVIVIDGDGSLLMN-L 75 (179)
T ss_pred HHHHHHHHhCC--CCeEE--eCCCHhHHHHHHc-cCcccccccccchh-hHHHHHHHHHhcCCCcEEEEECCcHHHhC-H
Confidence 44455555554 23333 35443321 1112 23467776433221 233467777766447777774 445322 2
Q ss_pred HHHHHhhhcCC-CCEEEE-eecCCCcCCCCCCCCC---hhhH-hHhhcCCCCEEEecC-CHHHHHHHHHHHHHhCCCCeE
Q 005820 481 DQVVHDVDLQK-LPVRFA-MDRAGLVGADGPTHCG---SFDV-TFMACLPNMVVMAPS-DEAELFHMVATAAAIDDRPSC 553 (676)
Q Consensus 481 dqi~~~~a~~~-lpV~iv-~~~~G~~G~dG~tH~~---~~d~-a~~~~iP~l~V~~Ps-d~~E~~~~~~~al~~~~~P~~ 553 (676)
..+ ..++..+ .|++++ +...++ +..+..+.. ..|. .+.+++ |+...... +++|+...+++++ ++|.+
T Consensus 76 ~el-~ta~~~~~~~l~vvV~NN~~~-~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~---~gp~l 149 (179)
T cd03372 76 GAL-ATIAAEKPKNLIIVVLDNGAY-GSTGNQPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL---DGPSF 149 (179)
T ss_pred HHH-HHHHHcCCCCEEEEEEcCccc-cccCCCCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc---CCCEE
Confidence 222 3344455 455555 455553 222221111 1122 233333 66666666 9999999999996 68988
Q ss_pred EEe
Q 005820 554 FRY 556 (676)
Q Consensus 554 ir~ 556 (676)
|-.
T Consensus 150 Iev 152 (179)
T cd03372 150 IHV 152 (179)
T ss_pred EEE
Confidence 754
No 239
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.82 E-value=7.1 Score=45.37 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=104.4
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEEee-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG 508 (676)
+.+.+. .=|++.+ --||+++.+|.|+|.. |.-.+|-. ..+.+..+..-| .++.+.+.|++++...... .|.
T Consensus 33 dal~~~-~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgl-a~A~~d~~Pll~itGqv~~~~~g~-- 107 (550)
T COG0028 33 DALYDS-GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGL-ADAYMDSVPLLAITGQVPTSLIGT-- 107 (550)
T ss_pred HHHHhC-CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-HHHHhcCCCEEEEeCCccccccCc--
Confidence 445554 5677776 7899999999999986 66555553 677766655554 4567789999988643221 232
Q ss_pred CCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCCCCccc-cCC----CCCCC-Cccc--
Q 005820 509 PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRGNGIGV-ELP----PGNKG-IPLE-- 576 (676)
Q Consensus 509 ~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~~~~~~-~~p----~~~~~-~~~~-- 576 (676)
-.+|..+...+++.+-.+ .+...+++|+-..++.|++. ..+|++|-+|+.-.... ..+ ..... .+..
T Consensus 108 ~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~~~~p~~~~ 186 (550)
T COG0028 108 DAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPPYRPAPPP 186 (550)
T ss_pred chhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccccCCCCCCc
Confidence 345555555566644322 57788889999999988872 34799999987431110 000 00000 0000
Q ss_pred ---cCce-eEeecCC-cEEEEEechhHHHHHHHHHHHHhC-CCc
Q 005820 577 ---VGKG-RILIEGE-RVALLGYGTAVQSCLAASALLESN-GLR 614 (676)
Q Consensus 577 ---~gk~-~vl~eG~-dv~Iva~Gs~v~~aleAa~~L~~~-Gi~ 614 (676)
+.++ +.+.+.+ -+++++.|.....|.+.+.+|.+. ++-
T Consensus 187 ~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~P 230 (550)
T COG0028 187 PEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAP 230 (550)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCC
Confidence 1111 2233333 566677777767766776666442 443
No 240
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=89.74 E-value=1.8 Score=43.21 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=69.7
Q ss_pred hhhhCCCceeeccc-cH-HHHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC--
Q 005820 435 FLRRFPTRCFDVGI-AE-QHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA-- 506 (676)
Q Consensus 435 f~~~~p~R~id~GI-aE-~~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~-- 506 (676)
+.-..|.+|+..+- .= -..+.+|.|++++. -++++++ -..|++-.-| + ..+...++|+++++ ...|+ |.
T Consensus 38 ~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~~~e-L-~Ta~~~~lpvi~vV~NN~~y-g~~~ 114 (196)
T cd02013 38 LRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMSMME-I-MTAVRHKLPVTAVVFRNRQW-GAEK 114 (196)
T ss_pred cCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH-H-HHHHHhCCCeEEEEEECchh-HHHH
Confidence 33455888886521 11 23556788877753 4566666 4556554333 3 34667789987776 55553 21
Q ss_pred ------CCC-----CCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH--hCCCCeEEEe
Q 005820 507 ------DGP-----THCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRY 556 (676)
Q Consensus 507 ------dG~-----tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~--~~~~P~~ir~ 556 (676)
.+. .+. ..|..-++.--|+.-..-.++.|+...++++++ +.++|++|-.
T Consensus 115 ~~q~~~~~~~~~~~~~~-~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~p~liev 176 (196)
T cd02013 115 KNQVDFYNNRFVGTELE-SESFAKIAEACGAKGITVDKPEDVGPALQKAIAMMAEGKTTVIEI 176 (196)
T ss_pred HHHHHHcCCCcccccCC-CCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 010 111 123332222236777888899999999999986 1478988754
No 241
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.62 E-value=2.9 Score=48.88 Aligned_cols=116 Identities=13% Similarity=0.038 Sum_probs=77.0
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
=|++.+ ..|++++.+|.|+|.. |.-.++. ++.+.+..++--| ..+...+.||+++.............+|..+...
T Consensus 39 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i-~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~ 116 (586)
T PRK06276 39 LIHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGI-ATAYADSSPVIALTGQVPTKLIGNDAFQEIDALG 116 (586)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHH-HHHHhcCCCEEEEeCCCCccccCCCCCccccHhh
Confidence 366666 7999999999999986 5443433 4777776666555 3567789999988633222111123356555666
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
+++.+-.. ...-.++.++...++.|+.. ..+|++|.+|..
T Consensus 117 l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 117 IFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred HHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 77765443 34456777888888877763 358999999875
No 242
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=89.43 E-value=12 Score=38.44 Aligned_cols=116 Identities=14% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCceeeccccHHHHHHHHHHHHh----c-----C-CeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC--
Q 005820 439 FPTRCFDVGIAEQHAVTFAAGLAC----E-----G-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-- 503 (676)
Q Consensus 439 ~p~R~id~GIaE~~~v~~A~GlA~----~-----G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~-- 503 (676)
+|.++++..+.-...+|.+..+|+ . - -++++++. +.|++..+..+.+ +...++||++++ +..++
T Consensus 51 ~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g~~~l~t-a~~~~l~i~ivVlNN~~yg~ 129 (237)
T cd02018 51 WAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIGFGALSH-SLFRGEDITVIVLDNEVYSN 129 (237)
T ss_pred cCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhccHHHHHH-HHHcCCCeEEEEECCccccC
Confidence 456677766545566665444443 3 1 36777774 4444334444443 345789988877 33332
Q ss_pred cC-CCCC----------CCCC----hhhH-hHhhcCCCCEE---EecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 504 VG-ADGP----------THCG----SFDV-TFMACLPNMVV---MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 504 ~G-~dG~----------tH~~----~~d~-a~~~~iP~l~V---~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
.+ .... +.++ .-|+ .+.+++ |..- ..+.++.|+...++++++..++|++|-.
T Consensus 130 ~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~-G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~v 200 (237)
T cd02018 130 TGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATH-GCVYVARLSPALKKHFLKVVKEAISRTDGPTFIHA 200 (237)
T ss_pred CCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHC-CCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 1100 0000 0122 233333 4443 3599999999999999863578988754
No 243
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=89.37 E-value=3 Score=48.58 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=76.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
|++.+ ..|++++.+|.|+|.. |.-.+|. ++.+.+..++.-| ..+-..+.||+++...... .+.+ .+|.....
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d~~ 120 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGL-ITAYWDSSPVIAITGQVPRSVMGKM--AFQEADAM 120 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHH-HHHHhhCCCEEEEecCCCccccCCC--Cccccchh
Confidence 55555 8899999999999986 5444444 4788776666555 3556789999998633322 2332 24444455
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
.+++.+-.+ .+...++.++...+..|++ ...+|++|-+|+.
T Consensus 121 ~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 165 (572)
T PRK06456 121 GVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRD 165 (572)
T ss_pred hhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence 677765544 3444678888887777765 2458999999864
No 244
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.34 E-value=4.4 Score=43.29 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhc------CCeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEeecCCC---cCC--CCCCC-------
Q 005820 452 HAVTFAAGLACE------GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL---VGA--DGPTH------- 511 (676)
Q Consensus 452 ~~v~~A~GlA~~------G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~---~G~--dG~tH------- 511 (676)
+.+++|.|++.+ +-..++++. +.+..-+++. ++.++..++||++++-.-.. +|. .+.|-
T Consensus 73 ~~~~~A~G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~-l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~t 151 (300)
T PRK11864 73 ATAAVASGIEEALKARGEKGVIVVGWAGDGGTADIGFQA-LSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTT 151 (300)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEEccCccccccHHH-HHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCcccc
Confidence 344555555554 335666554 4444445544 45778899999988732222 221 11110
Q ss_pred ---------CChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 512 ---------CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 512 ---------~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
-....+.....+|-+....|.++.++...++.|++ .++|.+|..
T Consensus 152 sp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~-~~Gps~I~~ 204 (300)
T PRK11864 152 TPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE-IRGFKFIHL 204 (300)
T ss_pred CCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11223333234555677899999999999999987 689988855
No 245
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=89.29 E-value=3.1 Score=48.52 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=75.2
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVT 518 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a 518 (676)
-|++.+ ..|++++.+|.|+|..--+|-++ +..+.+..++--|. .+...+.||+++..........-..+|..+...
T Consensus 50 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~-~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~ 127 (578)
T PRK06112 50 IRQIAY-RTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLA-EALKASVPIVALVQDVNRDQTDRNAFQELDHIA 127 (578)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHH-HHhhcCCCEEEEecCCccccCCCCCccccChhh
Confidence 567766 69999999999999863344433 36666655555543 566789999988633222111123356665666
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
+++.+-.+ .....+++++...++.|++. ..+|++|-+|..
T Consensus 128 l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 128 LFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred hhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 77766543 44556677777777766652 358999999865
No 246
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=88.82 E-value=2.1 Score=41.56 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=64.0
Q ss_pred hCCCceeeccccHH-HHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC--cC-----
Q 005820 438 RFPTRCFDVGIAEQ-HAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG----- 505 (676)
Q Consensus 438 ~~p~R~id~GIaE~-~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~--~G----- 505 (676)
..|.+++..+-.=. ..+.+|.|++++- -++++++ -..|+.-. .. +..+...++|+++++ +..++ ..
T Consensus 38 ~~~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~GDG~f~~~~-~e-l~ta~~~~~p~~~iV~nN~~~~~~~~~~~~ 115 (178)
T cd02002 38 TRPGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIGDGSFMYTI-QA-LWTAARYGLPVTVVILNNRGYGALRSFLKR 115 (178)
T ss_pred CCCCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEcCchhhccH-HH-HHHHHHhCCCeEEEEEcCccHHHHHHHHHH
Confidence 45788886633111 1345677777663 3455555 35565332 22 334566799988876 44332 10
Q ss_pred --CC--------CC-CCCChhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 005820 506 --AD--------GP-THCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (676)
Q Consensus 506 --~d--------G~-tH~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir 555 (676)
.+ +. ......|+. +...+ |+..+.-.++.|+...++++++ .++|++|-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~-~~~p~vi~ 175 (178)
T cd02002 116 VGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALA-EGGPALIE 175 (178)
T ss_pred HcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHh-CCCCEEEE
Confidence 00 00 001112332 33333 6667777889999999999986 67898874
No 247
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=88.74 E-value=1.8 Score=43.22 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=40.6
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhC--CCcEEEEEcccc---Cc-------CcHHHHHHHhccCCEEEE
Q 005820 586 GERVALLGYGTAV-QSCLAASALLESN--GLRLTVADARFC---KP-------LDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 586 G~dv~Iva~Gs~v-~~aleAa~~L~~~--Gi~v~VId~~~l---~P-------~d~e~i~~~~~~~~~vIv 643 (676)
..||+|.|.|... .+++.|++.|++. +++|+||++--| .| ++.+.+.++..+.+.||.
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViF 104 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIF 104 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEE
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEE
Confidence 3699999999977 9999999999997 999988876533 32 667778887766666664
No 248
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.73 E-value=3.7 Score=48.37 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=76.6
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=||+.+ -.|+.++.+|.|+|.. |...+|. +..+.+..++.-+ .++...+.||+++...... .|. ..+|....
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl-~~A~~d~~Pvl~i~G~~~~~~~~~--~~~Qe~d~ 136 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGI-ATAQMDSVPMVVITGQVPRPAIGT--DAFQETDI 136 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHH-HHHHhcCCCEEEEecCCCccccCC--CCcccccH
Confidence 477777 8999999999999986 5444444 3677766665554 4567789999988643332 132 23454444
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .....+++++..+++.|++. ..+|++|.+|..
T Consensus 137 ~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 137 FGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred HHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 5566654322 34567888888888887762 348999999874
No 249
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=88.54 E-value=8.9 Score=44.60 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=75.5
Q ss_pred CCceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChh
Q 005820 440 PTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSF 515 (676)
Q Consensus 440 p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~ 515 (676)
.=+++.+ ..|++++.+|-|+|.. |...+|. ++.+.+..++.-| ..+...+.||+++...... .+.+ .+|..+
T Consensus 45 ~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl-~~A~~~~~Pvl~i~G~~~~~~~~~~--~~q~~d 120 (561)
T PRK06048 45 DLRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGI-ATAYMDSVPIVALTGQVPRSMIGND--AFQEAD 120 (561)
T ss_pred CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEeccCCccccCCC--Cccccc
Confidence 3567776 8999999999999986 6444444 4777776666555 3567789999988633222 1222 234344
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
...+++.+-.. .+.-.++.++..+++.|++. ..+|++|.+|+.
T Consensus 121 ~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 121 ITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred hhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 44555544322 34456788888888887762 358999999874
No 250
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=88.18 E-value=5.9 Score=46.05 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=74.7
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCee-EEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p-~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ .-|++++.+|-|+|.. |... ++.|+.+.+..++.-|. .+...+.||+++...... .+. ..+|....
T Consensus 48 i~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~-~A~~~~~Pvl~IsG~~~~~~~~~--~~~q~~d~ 123 (568)
T PRK07449 48 LRLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVI-EAGLTGVPLIVLTADRPPELRDC--GANQAIDQ 123 (568)
T ss_pred cEEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHH-HHhhcCCcEEEEECCCCHHHhcC--CCCceecH
Confidence 366655 7899999999999986 5433 34458888877766653 567789999998643222 232 23566666
Q ss_pred HhHhhcCCCCEEEecCCHH----H-HHHHHHH---HHHhCCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEA----E-LFHMVAT---AAAIDDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~----E-~~~~~~~---al~~~~~P~~ir~~r~ 559 (676)
..+++.+-...+-.|.... + +..+++. +.....+|++|-+|..
T Consensus 124 ~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 124 LGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred hhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 7788876655555665521 1 2334444 3323578999999864
No 251
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=87.63 E-value=8.6 Score=40.86 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeecc-c--cHHHHHHHHHHHHhcC-CeeEEeec--hh
Q 005820 401 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVG-I--AEQHAVTFAAGLACEG-LKPFCAIY--SS 474 (676)
Q Consensus 401 ~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~G-I--aE~~~v~~A~GlA~~G-~~p~~~t~--~~ 474 (676)
...++.++|.++.....+.+++ .|+|.+... | ++++.+ + .=..++.+|.|++++. -++++++. .+
T Consensus 28 il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~-------~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i~GDG~ 98 (286)
T PRK11867 28 ILAALQRALAELGLDPENVAVV-SGIGCSGRL-------P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVVTGDGD 98 (286)
T ss_pred HHHHHHHHHHHhCCCCCcEEEE-eCCcccccc-------C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEEeCccH
Confidence 4455666665554333454444 466654321 1 344432 1 1133556777877763 35566653 33
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEe-ecCCC--cC-CCCCC----------CCCh----hhH-hHhhcCCCCEE--EecCC
Q 005820 475 FMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT----------HCGS----FDV-TFMACLPNMVV--MAPSD 533 (676)
Q Consensus 475 Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~--~G-~dG~t----------H~~~----~d~-a~~~~iP~l~V--~~Psd 533 (676)
+++-....+. .++..++|+++++ +..++ ++ ...++ ..+. .|. ++........| ....+
T Consensus 99 ~f~mg~~eL~-tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~ 177 (286)
T PRK11867 99 ALAIGGNHFI-HALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSD 177 (286)
T ss_pred HHhCCHHHHH-HHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCC
Confidence 2344444444 4577899987776 33332 22 11110 0110 122 23333322222 35789
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEe
Q 005820 534 EAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 534 ~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
++|+..+++.|++ .++|++|-.
T Consensus 178 ~~el~~al~~Al~-~~Gp~lIev 199 (286)
T PRK11867 178 VKQLTELIKAAIN-HKGFSFVEI 199 (286)
T ss_pred HHHHHHHHHHHHh-CCCCEEEEE
Confidence 9999999999987 678988754
No 252
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=87.45 E-value=10 Score=43.98 Aligned_cols=116 Identities=17% Similarity=0.078 Sum_probs=70.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCC-CCC--
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG-- 513 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~t-H~~-- 513 (676)
-|++.+ -.|+++.-+|-|+|.. |...+|. ++.+....+..-|. .+...++||+++...... .+.+... ||.
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia-~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~ 116 (535)
T TIGR03394 39 LPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIA-GAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRT 116 (535)
T ss_pred CeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHH-HHhhcCCCEEEEECCCCcccccCCceeEeeccc
Confidence 377764 8999999999999986 5554444 47777766665543 456789999998633221 2332222 443
Q ss_pred hh-hHhHhhcCCCCEEEecCCHHHH----HHHHHHHHHhCCCCeEEEecCCC
Q 005820 514 SF-DVTFMACLPNMVVMAPSDEAEL----FHMVATAAAIDDRPSCFRYPRGN 560 (676)
Q Consensus 514 ~~-d~a~~~~iP~l~V~~Psd~~E~----~~~~~~al~~~~~P~~ir~~r~~ 560 (676)
.. ...+++.+-.+ .....++.++ ...++.|+. ..+|++|-+|+..
T Consensus 117 ~~~~~~~~~~vtk~-~~~v~~~~~~~~~~~~A~~~a~~-~~gPv~i~iP~Dv 166 (535)
T TIGR03394 117 LDSQFQVFKEVTCD-QAVLDDPATAPAEIARVLGSARE-LSRPVYLEIPRDM 166 (535)
T ss_pred hHHHHHhhhhheEE-EEEeCChHHhHHHHHHHHHHHHH-CCCCEEEEechhh
Confidence 22 23556654322 2233444444 445555544 5689999999753
No 253
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=87.26 E-value=12 Score=43.52 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=76.3
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCC------CCC
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG------PTH 511 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG------~tH 511 (676)
|++.+ --|++++.+|-|+|.. |...+|. +..+.+..+..-|. .+...+.||+++...... .+.++ ..+
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla-~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~ 129 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVH-NAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWT 129 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHH-HHhhcCCCEEEEeccCCccccccccccccCcccc
Confidence 77776 7799999999999987 5433433 47888777766553 456789999988643221 11110 123
Q ss_pred CC-hhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 512 CG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 512 ~~-~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
|. .....+++.+-.. .....++.++...+..|++. ..+|++|.+|..
T Consensus 130 qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 130 QEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred hhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 44 3555677755432 56677888888888887762 468999999853
No 254
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=87.21 E-value=8.2 Score=43.33 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=70.8
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
+++.+ ..|+++.-+|-|+|.. |...+|. |+.+....++--+ ..+...+.||+++...... .+. | .+|.....
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl-~~A~~~~~Pvl~i~g~~~~~~~~~-~-~~q~~d~~ 115 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAV-IEASYSGVPLIVLTADRPPELRGC-G-ANQTIDQP 115 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHH-HHhcccCCcEEEEeCCCCHHHhCC-C-CCcccchh
Confidence 55555 8999999999999987 5433333 4777776665554 3556789999988633222 232 2 25555666
Q ss_pred hHhhcCCCCE--EEecCC-------HHHHHHHHHHHHHhCCCCeEEEecCC
Q 005820 518 TFMACLPNMV--VMAPSD-------EAELFHMVATAAAIDDRPSCFRYPRG 559 (676)
Q Consensus 518 a~~~~iP~l~--V~~Psd-------~~E~~~~~~~al~~~~~P~~ir~~r~ 559 (676)
.+++.+-.+. |-.|.+ +..+...++.|.....+|++|-+|..
T Consensus 116 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 116 GLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred hHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 7777655443 334443 23344444444433558999999864
No 255
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=86.94 E-value=5.2 Score=46.81 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=74.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
=|++.+ ..|++++.+|.|+|.. |...+|. ++.+.+..+..-| ..+-..+.||+++...... .+.+ .+|..+.
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~d~ 127 (585)
T CHL00099 52 IKHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGI-ATAQMDSVPLLVITGQVGRAFIGTD--AFQEVDI 127 (585)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHH-HHHhhcCCCEEEEecCCCccccCCC--Cccccch
Confidence 366665 7999999999999986 6444443 4777776665554 3566789999998643322 2222 2444433
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-. ......+++++..+++.|+.. ..+|++|.+|..
T Consensus 128 ~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 128 FGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred hhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 345554322 245566788888888887752 357999999875
No 256
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=86.80 E-value=4.2 Score=42.67 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=41.6
Q ss_pred CccchhhHHHHHHHHHch--h-cCC--C--CeEEEEEcCCc--ccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 187 GHSSTSISAGLGMAVGRD--L-KGR--K--NNVVAVIGDGA--MTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~--~-~~~--~--~~vv~viGDGa--~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
+.-|+.++.++-.|+..= . .+. . .+++.++.||+ .++|..-+++.-|...+..+++|+-||.
T Consensus 135 ~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 135 QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 344556766666555421 1 111 1 38999999999 8889887778878887877777776664
No 257
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=86.55 E-value=15 Score=42.72 Aligned_cols=116 Identities=9% Similarity=-0.023 Sum_probs=77.1
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCc--CCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLV--GADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~--G~dG~tH~~~~d 516 (676)
-|++.+ -.|++++.+|-|+|.. |...+|. +..+.+..+.--| ..+...+.||+++....... +.....+|....
T Consensus 41 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gi-a~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 118 (554)
T TIGR03254 41 MRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQ 118 (554)
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHH-HHHHhcCCCEEEEEccCCccccccCCCCcchhhH
Confidence 367666 8899999999999986 6544444 3677776665554 35567899999886332221 111223666556
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
..+++.+-.. .+...++.++..++..|++ ...+|++|-+|+.
T Consensus 119 ~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 119 LAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred HHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 6777765443 5666678887777777765 2457899999864
No 258
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=86.11 E-value=5.3 Score=37.80 Aligned_cols=116 Identities=20% Similarity=0.177 Sum_probs=67.6
Q ss_pred hhhCCCceeec--cccHHHHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC--cC--
Q 005820 436 LRRFPTRCFDV--GIAEQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-- 505 (676)
Q Consensus 436 ~~~~p~R~id~--GIaE~~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~--~G-- 505 (676)
.-..|.+|+.. .-+=..++++|.|++++. -++++.+ -.+|+.-. ..+ ..+...++|+++++ +..++ .+
T Consensus 14 ~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~-~el-~ta~~~~~~v~~vv~nN~~~~~~~~~ 91 (153)
T PF02775_consen 14 RVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSL-QEL-ATAVRYGLPVVIVVLNNGGYGMTGGQ 91 (153)
T ss_dssp CCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHG-GGH-HHHHHTTSSEEEEEEESSBSHHHHHH
T ss_pred CcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeecc-chh-HHHhhccceEEEEEEeCCcceEeccc
Confidence 33457888872 334455677888888873 4555555 45665442 223 34567788977776 44443 11
Q ss_pred --CCCC-C--C-----CChhhH-hHhhcCCCCEEEecCC--HHHHHHHHHHHHHhCCCCeEEE
Q 005820 506 --ADGP-T--H-----CGSFDV-TFMACLPNMVVMAPSD--EAELFHMVATAAAIDDRPSCFR 555 (676)
Q Consensus 506 --~dG~-t--H-----~~~~d~-a~~~~iP~l~V~~Psd--~~E~~~~~~~al~~~~~P~~ir 555 (676)
..+. + . ....|+ .+.+. -|+..+.-.+ ++|+...++++++ .++|++|-
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~~~el~~al~~a~~-~~gp~vIe 152 (153)
T PF02775_consen 92 QTPFGGGRFSGVDGKTFPNPDFAALAEA-FGIKGARVTTPDPEELEEALREALE-SGGPAVIE 152 (153)
T ss_dssp HHHTTSTCHHSTBTTTSTTCGHHHHHHH-TTSEEEEESCHSHHHHHHHHHHHHH-SSSEEEEE
T ss_pred cccCcCcccccccccccccCCHHHHHHH-cCCcEEEEccCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 0111 1 0 112233 33444 4777666444 4999999999985 78998873
No 259
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=85.80 E-value=8.8 Score=37.75 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=64.8
Q ss_pred hhCCCceeeccc-c-HHHHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC----
Q 005820 437 RRFPTRCFDVGI-A-EQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA---- 506 (676)
Q Consensus 437 ~~~p~R~id~GI-a-E~~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~---- 506 (676)
-..|.+++..+- . =-..++.|.|+++.- -++++.+ -..|+.-..| +. .+...++|+++++ ...|+ +.
T Consensus 37 ~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l~-ta~~~~~p~~ivV~nN~~~-~~~~~~ 113 (183)
T cd02005 37 LPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-LS-TMIRYGLNPIIFLINNDGY-TIERAI 113 (183)
T ss_pred CCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-HH-HHHHhCCCCEEEEEECCCc-EEEEEe
Confidence 344678886532 1 112345667766653 3555555 4556543333 33 4566678877666 44443 21
Q ss_pred CC--CCCCC--hhhHh-HhhcCC---CCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 507 DG--PTHCG--SFDVT-FMACLP---NMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 507 dG--~tH~~--~~d~a-~~~~iP---~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
.+ ..+.. ..|.. +...+- +...+...++.|+...++++++..++|++|-.
T Consensus 114 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~liev 171 (183)
T cd02005 114 HGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIEV 171 (183)
T ss_pred ccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 11 11111 12322 333332 36778889999999999999863478988754
No 260
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=85.74 E-value=5 Score=37.62 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEE-cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVI-GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~vi-GDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
+..+|.|+|.+ +. ..++... |.|..+ ..+++..|...+.|+++|.-+..
T Consensus 47 a~~~A~G~a~~----~~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~ 96 (154)
T cd06586 47 AAGAAAGYARA----GG-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARG 96 (154)
T ss_pred HHHHHHHHHHh----hC-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCC
Confidence 45667777765 22 3333334 888764 67888888888899999997665
No 261
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=85.67 E-value=16 Score=42.60 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=77.7
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++.+ -.|++++.+|.|+|.. |...+|. +..+.+..+..-| ..+...+.||+++...... .+..-.++|....
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl-~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~ 125 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTAL-ANATTNCFPMIMISGSSEREIVDLQQGDYEELDQ 125 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH-HHHHhcCCCEEEEEccCCcccccccCCCccccch
Confidence 466666 8899999999999987 5544444 3777776666555 3567789999988633221 1111123565666
Q ss_pred HhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 517 VTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 517 ~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
..+++.+-.+ .+...++.++...+..|+.. ..+|++|-+|+.
T Consensus 126 ~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 126 LNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred hhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 6677765443 45566788888877777762 457899999864
No 262
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=85.18 E-value=3.9 Score=38.98 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=63.7
Q ss_pred CCCceeecccc--HHHHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCC----
Q 005820 439 FPTRCFDVGIA--EQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGP---- 509 (676)
Q Consensus 439 ~p~R~id~GIa--E~~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~---- 509 (676)
.|.+++..+.. =-..++.|.|+++.. -++++.+ -..|+. .+..+ ..+...++|+++++...+..+..+.
T Consensus 35 ~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~-~~~~l-~ta~~~~~~~~~iv~nN~~~~~~~~~~~~ 112 (168)
T cd00568 35 RGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMM-TGQEL-ATAVRYGLPVIVVVFNNGGYGTIRMHQEA 112 (168)
T ss_pred CCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhc-cHHHH-HHHHHcCCCcEEEEEECCccHHHHHHHHH
Confidence 34555543222 123345677777664 3444554 355554 34433 4456779998887743332111000
Q ss_pred --------CCCChhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 510 --------THCGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 510 --------tH~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
......|+. +... -|+......++.|+...++++++ .++|++|..
T Consensus 113 ~~~~~~~~~~~~~~d~~~~a~~-~G~~~~~v~~~~~l~~a~~~a~~-~~~p~~i~v 166 (168)
T cd00568 113 FYGGRVSGTDLSNPDFAALAEA-YGAKGVRVEDPEDLEAALAEALA-AGGPALIEV 166 (168)
T ss_pred HcCCCcccccCCCCCHHHHHHH-CCCeEEEECCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 111122332 3343 47778888889999999999975 688988754
No 263
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.91 E-value=15 Score=39.20 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhc----CC-eeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC--cCC-CCC----------
Q 005820 451 QHAVTFAAGLACE----GL-KPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VGA-DGP---------- 509 (676)
Q Consensus 451 ~~~v~~A~GlA~~----G~-~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~--~G~-dG~---------- 509 (676)
.+++++|.|++.+ +. ++++++ -+.|..-++..+. .+...+.++++++ +...+ +|. .-+
T Consensus 72 g~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~t 150 (299)
T PRK11865 72 ENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTT 150 (299)
T ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCccccc
Confidence 3456677777654 32 356665 3556666666554 4577788887776 33222 321 111
Q ss_pred C------------CCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 510 T------------HCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 510 t------------H~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+ .-....++.....|-+....|.++.|+...++.|++ .++|++|..
T Consensus 151 sp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~-~~Gps~I~v 208 (299)
T PRK11865 151 SPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE-VEGPAYIQV 208 (299)
T ss_pred CCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1 111222322244555677899999999999999987 689988854
No 264
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=84.68 E-value=28 Score=34.46 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHHHHHHHHHHHhhhcCCC-CEEEEe-ecCCCcCCCC--CCC
Q 005820 439 FPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKL-PVRFAM-DRAGLVGADG--PTH 511 (676)
Q Consensus 439 ~p~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~l-pV~iv~-~~~G~~G~dG--~tH 511 (676)
.|.+|+..|--=. .+..|.|++++. -++++.+. ..|+.- ... +..++..++ |+++++ +..|+ |..+ .+.
T Consensus 40 ~~~~~~~~g~mG~-~lpaAiGaala~p~~~Vv~i~GDG~f~m~-~~e-L~ta~~~~l~~i~ivV~NN~~y-g~~~~~~~~ 115 (188)
T cd03371 40 HAQDFLTVGSMGH-ASQIALGIALARPDRKVVCIDGDGAALMH-MGG-LATIGGLAPANLIHIVLNNGAH-DSVGGQPTV 115 (188)
T ss_pred ccCceeecCcccc-HHHHHHHHHHhCCCCcEEEEeCCcHHHhh-ccH-HHHHHHcCCCCcEEEEEeCchh-hccCCcCCC
Confidence 3588887533222 456777777653 45666663 555432 222 334455665 554444 55543 2111 111
Q ss_pred CChhhHh-HhhcCCCCEE-EecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 512 CGSFDVT-FMACLPNMVV-MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 512 ~~~~d~a-~~~~iP~l~V-~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
....|.. +...+ |+.- ....++.|+...++++++ .++|++|..
T Consensus 116 ~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~-~~~p~lIev 160 (188)
T cd03371 116 SFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALA-ADGPAFIEV 160 (188)
T ss_pred CCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 1112332 33333 5553 466799999999999986 578988754
No 265
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=83.64 E-value=6.5 Score=42.91 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCceeeccccHHHHHHHHHHHHhcC-Ce-eEEeechhHH--HHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCC-C
Q 005820 439 FPTRCFDVGIAEQHAVTFAAGLACEG-LK-PFCAIYSSFM--QRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTH-C 512 (676)
Q Consensus 439 ~p~R~id~GIaE~~~v~~A~GlA~~G-~~-p~~~t~~~Fl--~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH-~ 512 (676)
+..-..-+|-.=-+++|+|.++-+.| .. ..+++|.+.. +-.+-.-+|.++.+++||+|++-.-+. -+ -|.. |
T Consensus 131 ~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS--vp~~~q 208 (358)
T COG1071 131 FLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS--VPRSRQ 208 (358)
T ss_pred cCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee--cchhhc
Confidence 44444444444446666666666667 33 4444465553 222222368899999999999966554 12 1222 3
Q ss_pred ChhhH----hHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 513 GSFDV----TFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 513 ~~~d~----a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
...++ +..-.||++.| .=.|...+....++|.+ ..++|++|-.
T Consensus 209 ~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 33322 22336899988 78888888888888876 3557998844
No 266
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=83.53 E-value=7.9 Score=37.83 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=51.9
Q ss_pred HHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCC-----------CCChhhHh-
Q 005820 455 TFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPT-----------HCGSFDVT- 518 (676)
Q Consensus 455 ~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~t-----------H~~~~d~a- 518 (676)
++|.|++++. -++++.+ -..|+.-++..+ ..+...++|+++++ +..++ |..+.. .....|+.
T Consensus 58 ~~AiGa~la~p~~~Vv~i~GDG~f~~~g~~eL-~ta~~~~l~i~vvV~nN~~~-g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAVIGDSTFFHSGILGL-INAVYNKANITVVILDNRTT-AMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEEecChHHhhccHHHH-HHHHHcCCCEEEEEECCcce-eccCCCCCCCCcccccCCCCccCHHH
Confidence 4666666653 4566666 355654333334 34677899987766 44443 211111 01112222
Q ss_pred HhhcCCCCEEE---ecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 519 FMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 519 ~~~~iP~l~V~---~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
+.+++ |+..+ .|.+-+++...++.+++ .++|.+|..
T Consensus 136 ~a~a~-G~~~~~v~~~~~l~~~~~al~~a~~-~~gp~lI~v 174 (178)
T cd02008 136 LVRAI-GVKRVVVVDPYDLKAIREELKEALA-VPGVSVIIA 174 (178)
T ss_pred HHHHC-CCCEEEecCccCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 22322 45444 44455555588898876 578988754
No 267
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=83.44 E-value=10 Score=37.78 Aligned_cols=99 Identities=9% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhc----C-CeeEEeechhHH-H--HHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcC
Q 005820 452 HAVTFAAGLACE----G-LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACL 523 (676)
Q Consensus 452 ~~v~~A~GlA~~----G-~~p~~~t~~~Fl-~--ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~i 523 (676)
+.+++|+|+|+. | -++++++..+.- + ..++.+ +.++....|++++++..++ +.++++. ...+ .++.
T Consensus 79 ~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~~~li~vvdnN~~-~~~~~~~-~~~~--~~~a- 152 (195)
T cd02007 79 TSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEAL-NNAGYLKSNMIVILNDNEM-SISPNVG-TPGN--LFEE- 152 (195)
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHH-HHHHHhCCCEEEEEECCCc-ccCCCCC-CHHH--HHHh-
Confidence 344666776664 3 244555544332 2 334544 4556669999999887774 3445554 2222 3443
Q ss_pred CCCEE---EecCCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 524 PNMVV---MAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 524 P~l~V---~~Psd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
.++.+ +...|..++...++.+.+ .++|++|...
T Consensus 153 ~G~~~~~~vdG~d~~~l~~a~~~a~~-~~~P~~I~~~ 188 (195)
T cd02007 153 LGFRYIGPVDGHNIEALIKVLKEVKD-LKGPVLLHVV 188 (195)
T ss_pred cCCCccceECCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 34433 466688999999988865 6789988653
No 268
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=82.36 E-value=17 Score=37.79 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=62.9
Q ss_pred HHHHHHHHHhc------CCeeEEee-chhHHH-HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCC--ChhhH-hHh
Q 005820 453 AVTFAAGLACE------GLKPFCAI-YSSFMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC--GSFDV-TFM 520 (676)
Q Consensus 453 ~v~~A~GlA~~------G~~p~~~t-~~~Fl~-ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~--~~~d~-a~~ 520 (676)
.+++|.|+|++ ..+.+|-+ -..|.. ..++.+ ..++..++| ++++++..++ +.+++++. ...|+ ..+
T Consensus 110 gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal-~~a~~~~l~~li~vvdnN~~-~~~~~~~~~~~~~~~~~~~ 187 (255)
T cd02012 110 GLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAA-SFAGHYKLDNLIAIVDSNRI-QIDGPTDDILFTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHH-HHHHHcCCCcEEEEEECCCc-cccCcHhhccCchhHHHHH
Confidence 44567777765 34445444 344432 345554 456778887 6666676664 44455432 22333 344
Q ss_pred hcCCCCEEEecC--CHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 521 ACLPNMVVMAPS--DEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 521 ~~iP~l~V~~Ps--d~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
+++ |+.++.-. |..++...++.+.+..++|++|...
T Consensus 188 ~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~~ 225 (255)
T cd02012 188 EAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIAK 225 (255)
T ss_pred HHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 554 88887767 9999999999987643789888654
No 269
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=81.78 E-value=6.2 Score=34.02 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=50.4
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc----cCCEEEEEcCCCCCCHHHHHH
Q 005820 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSHVV 657 (676)
Q Consensus 586 G~dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~----~~~~vIvvEe~~~gG~gs~v~ 657 (676)
..+|+|++.|+ .-..|..|.+.|++.|++.+.+|+.. |.+...++.+ .+=..|++.....||+....+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHH
Confidence 45799999883 66889999999999999999999753 3333333221 222456677656899875443
Q ss_pred HHHHHcCCC
Q 005820 658 QFLAQDGLL 666 (676)
Q Consensus 658 ~~l~~~~~l 666 (676)
+.+.|.|
T Consensus 83 --l~~~g~L 89 (90)
T cd03028 83 --MHESGEL 89 (90)
T ss_pred --HHHcCCc
Confidence 4455543
No 270
>PRK06154 hypothetical protein; Provisional
Probab=81.12 E-value=18 Score=42.26 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=70.7
Q ss_pred hhhhhCCCceeeccc--cHHHHHHHHHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC-
Q 005820 434 LFLRRFPTRCFDVGI--AEQHAVTFAAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA- 506 (676)
Q Consensus 434 ~f~~~~p~R~id~GI--aE~~~v~~A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~- 506 (676)
.+.-..|.+|+..+- +=-..+..|.|++++- -++++++ -..|++-.-| +..+...++|+++++ ...++ |.
T Consensus 415 ~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~E--L~Ta~r~~lpi~~vV~NN~~y-g~~ 491 (565)
T PRK06154 415 FYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMD--FETAVRERIPILTILLNNFSM-GGY 491 (565)
T ss_pred hCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHH--HHHHHHhCCCeEEEEEECCcc-cee
Confidence 344456889987642 1122455666766663 4666666 4556544433 345677899987776 34443 21
Q ss_pred C------CCCCCC---hhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHH--hCCCCeEEEe
Q 005820 507 D------GPTHCG---SFDVT-FMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRY 556 (676)
Q Consensus 507 d------G~tH~~---~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~--~~~~P~~ir~ 556 (676)
. +..+.. ..|.. +..++ |..-+.-.+++|+...++.|+. ..++|.+|-.
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIev 552 (565)
T PRK06154 492 DKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLEV 552 (565)
T ss_pred ehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEEE
Confidence 0 111111 12333 33333 7777888899999999999986 2577988855
No 271
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=81.09 E-value=15 Score=48.37 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=74.1
Q ss_pred CceeeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFD 516 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d 516 (676)
-|++.+ .-|+++.-+|.|+|..-.+|-++ |..+.....+--+. .+...+.||+++...... .+. | .+|.+++
T Consensus 340 i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~-eA~~d~vPlLvItgd~p~~~~~~-g-a~Q~iDq 415 (1655)
T PLN02980 340 TTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVV-EASQDFVPLLLLTADRPPELQDA-G-ANQAINQ 415 (1655)
T ss_pred CeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH-HHhhcCCCEEEEeCCCCHHHhcC-C-CCcccch
Confidence 355544 89999999999999975455443 47777666655554 567789999988633222 233 2 3666777
Q ss_pred HhHhhcCCCCEEE--ecCCH-------HHHHHHHHHHHHhCCCCeEEEecC
Q 005820 517 VTFMACLPNMVVM--APSDE-------AELFHMVATAAAIDDRPSCFRYPR 558 (676)
Q Consensus 517 ~a~~~~iP~l~V~--~Psd~-------~E~~~~~~~al~~~~~P~~ir~~r 558 (676)
..+++.+-.+..- .|.+. ..+...+..|.....+||+|-+|.
T Consensus 416 ~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 416 VNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred hhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECcc
Confidence 7888877665443 44452 344445555544345899999984
No 272
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=80.73 E-value=19 Score=34.32 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=32.4
Q ss_pred hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHH-HhhhcCCCEEEEEECCC
Q 005820 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMN-NAGYLDSDMIVILNDNK 248 (676)
Q Consensus 193 ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln-~A~~~~~~li~Iv~dN~ 248 (676)
+++|.|+|+. | .+.+++.. ..+. ..+++.+. .++.++.|++++....+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g 100 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAG 100 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCc
Confidence 5667777753 3 34455554 3332 36788877 88888999999998665
No 273
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=80.42 E-value=8.3 Score=40.83 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeec--hhHHH
Q 005820 401 YTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIY--SSFMQ 477 (676)
Q Consensus 401 ~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~t~--~~Fl~ 477 (676)
...++.+++.++--..++.+++ .|.|.+..+..+.+ +. .+.+. =..++.+|.|+.++. -++++++. ++|+.
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivv-sdiG~~~~~~~~~~--~~-~~~~~--mG~alp~AiGaklA~pd~~VVai~GDG~~~~ 92 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIV-SGIGQAAKMPHYIN--VN-GFHTL--HGRAIPAATAVKATNPELTVIAEGGDGDMYA 92 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEE-eCchHhhhHHHHcc--CC-CCCcc--cccHHHHHHHHHHHCCCCcEEEEECchHHhh
Confidence 3456777776653333344433 45554332222211 11 11111 123566778887775 46777774 44443
Q ss_pred HHHHHHHHhhhcCCCCEEEEe-ecCCC--cC-CCCCC------------C--CChhhHhHhhcCCCCEEEe---cCCHHH
Q 005820 478 RAYDQVVHDVDLQKLPVRFAM-DRAGL--VG-ADGPT------------H--CGSFDVTFMACLPNMVVMA---PSDEAE 536 (676)
Q Consensus 478 ra~dqi~~~~a~~~lpV~iv~-~~~G~--~G-~dG~t------------H--~~~~d~a~~~~iP~l~V~~---Psd~~E 536 (676)
-++..+. .++..++||++++ +..++ ++ ..-++ . ....|+.-++.--|...++ +.++.|
T Consensus 93 iG~~eL~-tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~ 171 (280)
T PRK11869 93 EGGNHLI-HAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEE 171 (280)
T ss_pred CcHHHHH-HHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHH
Confidence 3345554 4678899988876 44332 22 11000 0 0111332222223554555 999999
Q ss_pred HHHHHHHHHHhCCCCeEEEe
Q 005820 537 LFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 537 ~~~~~~~al~~~~~P~~ir~ 556 (676)
+...++.|++ .++|++|-.
T Consensus 172 l~~~i~~Al~-~~Gp~lIeV 190 (280)
T PRK11869 172 TKEILKEAIK-HKGLAIVDI 190 (280)
T ss_pred HHHHHHHHHh-CCCCEEEEE
Confidence 9999999997 689988854
No 274
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=80.12 E-value=14 Score=36.72 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=56.3
Q ss_pred HHHHHHHHHhc-CCeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCCCCCCCC--------------C-
Q 005820 453 AVTFAAGLACE-GLKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGADGPTHC--------------G- 513 (676)
Q Consensus 453 ~v~~A~GlA~~-G~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~dG~tH~--------------~- 513 (676)
.+.+|.|++++ .-++++.+. ..|++.....+ ..+...++||++++ +..++ |.-+.+++ .
T Consensus 56 glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL-~ta~~~~lpv~iiVlnN~~y-g~~~~~~~~~~~~~~~~~~~~~~~ 133 (193)
T cd03375 56 ALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHF-IHAARRNIDITVIVHNNQIY-GLTKGQASPTTPEGFKTKTTPYGN 133 (193)
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHhhccHHHH-HHHHHhCCCeEEEEEcCccc-ccCCCccCCCCCCCCcccCCCCCC
Confidence 34467777775 356677764 33333333333 34567799988766 44443 21110000 0
Q ss_pred ---hhhHh-HhhcCCCCEE---EecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 514 ---SFDVT-FMACLPNMVV---MAPSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 514 ---~~d~a-~~~~iP~l~V---~~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
..|.. +...+ +..- ..+.++.|+...++++++ .++|++|-.
T Consensus 134 ~~~~~d~~~iA~a~-G~~~~~~~~v~~~~el~~al~~al~-~~gp~vIev 181 (193)
T cd03375 134 IEEPFNPLALALAA-GATFVARGFSGDIKQLKEIIKKAIQ-HKGFSFVEV 181 (193)
T ss_pred CCCCCCHHHHHHHC-CCCEEEEEecCCHHHHHHHHHHHHh-cCCCEEEEE
Confidence 01222 22332 3332 468999999999999987 688988754
No 275
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=79.67 E-value=11 Score=40.27 Aligned_cols=102 Identities=12% Similarity=0.157 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcC-CeeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC--cCC-CCCCC----------C---
Q 005820 453 AVTFAAGLACEG-LKPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL--VGA-DGPTH----------C--- 512 (676)
Q Consensus 453 ~v~~A~GlA~~G-~~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~--~G~-dG~tH----------~--- 512 (676)
++.+|.|++++. -++++++. .+|+......+.+ ++..++|+++++ +..++ ++. .-++. .
T Consensus 75 alpaAiGaklA~pd~~VV~i~GDG~~~~mg~~eL~t-A~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~ 153 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVVGGDGDLASIGGGHFIH-AGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNI 153 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEEeCccHHHhccHHHHHH-HHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCc
Confidence 456788877763 45666663 4444344445544 578899987776 44332 221 00110 0
Q ss_pred -ChhhHhHhhcCCCCEEE---ecCCHHHHHHHHHHHHHhCCCCeEEEe
Q 005820 513 -GSFDVTFMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFRY 556 (676)
Q Consensus 513 -~~~d~a~~~~iP~l~V~---~Psd~~E~~~~~~~al~~~~~P~~ir~ 556 (676)
...|+.-++.--|...+ ...++.|+..+++.|++ .++|++|-.
T Consensus 154 ~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~-~~GpalIeV 200 (301)
T PRK05778 154 EPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS-HKGFAFIDV 200 (301)
T ss_pred CCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh-CCCCEEEEE
Confidence 11233322222355443 68999999999999987 688988754
No 276
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=74.55 E-value=27 Score=33.95 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=25.0
Q ss_pred hhhc-CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEE
Q 005820 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360 (676)
Q Consensus 321 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 360 (676)
++.+ |+.++.| -|..+...+++.+.+ .++|+++.-
T Consensus 130 lr~iPg~~V~~P---sd~~e~~~~l~~~~~--~~~P~~~~e 165 (167)
T cd07036 130 FAHIPGLKVVAP---STPYDAKGLLKAAIR--DDDPVIFLE 165 (167)
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--CCCcEEEEe
Confidence 3444 7777777 677777888888776 468998753
No 277
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=73.87 E-value=19 Score=42.23 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcC------CeeEEeechhHH-H--HHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCC-----CChhhH-
Q 005820 453 AVTFAAGLACEG------LKPFCAIYSSFM-Q--RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH-----CGSFDV- 517 (676)
Q Consensus 453 ~v~~A~GlA~~G------~~p~~~t~~~Fl-~--ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH-----~~~~d~- 517 (676)
.+++|.|+|++- .++++++.++.- + ..++.+ +.++..+.|++++.+..++ +-++++. ....++
T Consensus 122 gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal-~~A~~~~~nli~IvdnN~~-~i~~~~~~~~~~~~~~~~~ 199 (580)
T PRK05444 122 SISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEAL-NNAGDLKSDLIVILNDNEM-SISPNVGALSNYLARLRSS 199 (580)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHH-HHHHhhCCCEEEEEECCCC-cCCCcchhhhhhhccccHH
Confidence 456777777642 356666654442 2 445554 4566667999998888775 3344442 111222
Q ss_pred hHhhcCCCCEEEec---CCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 518 TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 518 a~~~~iP~l~V~~P---sd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
..++++ |+.++.+ .|..++...++.+.. .++|++|...
T Consensus 200 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~-~~~P~lI~~~ 240 (580)
T PRK05444 200 TLFEEL-GFNYIGPIDGHDLDALIETLKNAKD-LKGPVLLHVV 240 (580)
T ss_pred HHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 244543 7766544 788999999988865 5689988553
No 278
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=73.21 E-value=12 Score=32.94 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 586 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 586 G~dv~Iva~G----s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
..+|+|++.| +....|..|.+.|++.|++...+|+.. .|--.+.+.+.- ..+=..|.+.....||+..... +
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~-~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~--l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE-DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME--M 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH--H
Confidence 4579999888 467899999999999999999999852 121122333321 1222456678666899876554 4
Q ss_pred HHcCCC
Q 005820 661 AQDGLL 666 (676)
Q Consensus 661 ~~~~~l 666 (676)
.+.|-|
T Consensus 88 ~~~g~L 93 (97)
T TIGR00365 88 YQSGEL 93 (97)
T ss_pred HHCcCh
Confidence 455544
No 279
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=72.14 E-value=12 Score=30.56 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=44.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc-cCCEEEEEcCCCCCCHHHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~-~~~~vIvvEe~~~gG~gs~ 655 (676)
+++|.+. +....|..|.+.|++.||+.+.+|+..-.+ ..+.+.+... .+-.+|.+.....||+-..
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEeCHHHH
Confidence 4666665 445779999999999999999999874332 2333444432 3335666776668997644
No 280
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=72.07 E-value=15 Score=40.06 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcC-CeeEEeechh--HHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCC--ChhhHhHh-h--cCC
Q 005820 453 AVTFAAGLACEG-LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFM-A--CLP 524 (676)
Q Consensus 453 ~v~~A~GlA~~G-~~p~~~t~~~--Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~--~~~d~a~~-~--~iP 524 (676)
++|+|.|..+.+ -+++++++.+ |.+-.+-+-++.++..++||++++...++ +...++.. ...|++-. . .+|
T Consensus 131 AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~-~~~~~~~~~~~~~d~~~~a~a~G~~ 209 (341)
T TIGR03181 131 AAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQW-AISVPRSKQTAAPTLAQKAIAYGIP 209 (341)
T ss_pred HHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCC-ccccchhhhhCCcCHHHHHhhCCCC
Confidence 344444444443 4566666544 43322223356788999999999866553 21122221 12233222 2 234
Q ss_pred CCEEEecCCHHHHHH----HHHHHHHhCCCCeEEEe
Q 005820 525 NMVVMAPSDEAELFH----MVATAAAIDDRPSCFRY 556 (676)
Q Consensus 525 ~l~V~~Psd~~E~~~----~~~~al~~~~~P~~ir~ 556 (676)
+..| .-.|..++.. .++.+.. .++|++|-.
T Consensus 210 ~~~V-dg~d~~av~~a~~~A~~~a~~-~~gP~lIev 243 (341)
T TIGR03181 210 GVQV-DGNDVLAVYAVTKEAVERARS-GGGPTLIEA 243 (341)
T ss_pred EEEE-CCCCHHHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence 4433 3334444344 4444433 578998854
No 281
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=71.85 E-value=56 Score=37.78 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=63.3
Q ss_pred CCceeeccccHHHHHHH----HHHHHhcC-CeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCCcCC----C
Q 005820 440 PTRCFDVGIAEQHAVTF----AAGLACEG-LKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGLVGA----D 507 (676)
Q Consensus 440 p~R~id~GIaE~~~v~~----A~GlA~~G-~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~~G~----d 507 (676)
|.+++..+ -.+.+|. |.|++++. -++++++ -..|++-..| +..+...++|+++++ ...++ |. .
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~E--L~Ta~~~~lpi~~vV~NN~~y-~~i~~~~ 468 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQE--LGSMLRDKQHPIILVLNNEGY-TVERAIH 468 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHH--HHHHHHcCCCCEEEEEeCCce-EEEEeec
Confidence 55777654 3454554 55555553 3556665 4556544433 345677899977766 44443 20 0
Q ss_pred C--CCCCC--hhhHhHhhcCCCC----EEEecCCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 508 G--PTHCG--SFDVTFMACLPNM----VVMAPSDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 508 G--~tH~~--~~d~a~~~~iP~l----~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
+ ..+.. ..|..-+..--|. .-+.-.+..|+...++.+++ .++|++|-..
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~-~~~p~liev~ 525 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAA-HERLSLIEVV 525 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhc-cCCeEEEEEE
Confidence 1 11111 1122222221233 36777999999999999987 6889988654
No 282
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=71.02 E-value=34 Score=40.07 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=63.7
Q ss_pred eeccccHHHHHHHHHHHHhc----C-CeeEEeech--hHHH-HHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCC----
Q 005820 444 FDVGIAEQHAVTFAAGLACE----G-LKPFCAIYS--SFMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH---- 511 (676)
Q Consensus 444 id~GIaE~~~v~~A~GlA~~----G-~~p~~~t~~--~Fl~-ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH---- 511 (676)
+.+|+.= +.+++|.|+|++ | ...+++++. .+.. .++|.+ |.++.+++|++++++.-++. .++++-
T Consensus 110 ~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAl-n~A~~~k~~li~Ii~dN~~s-i~~~~~~~~~ 186 (581)
T PRK12315 110 FTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGL-NNAAELKSNLIIIVNDNQMS-IAENHGGLYK 186 (581)
T ss_pred cCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHH-HHHHhhCCCEEEEEECCCCc-CCCCCchhhh
Confidence 4556633 467788888875 3 233444443 3333 556665 67888889999999776652 222221
Q ss_pred C-C------hhh-HhHhhcCCCCEEEec---CCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 512 C-G------SFD-VTFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 512 ~-~------~~d-~a~~~~iP~l~V~~P---sd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
. . ..+ -..+.++ |+..+.| .|..++...++.+-. .++|++|...
T Consensus 187 ~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~-~~gP~~i~~~ 241 (581)
T PRK12315 187 NLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKD-IDHPIVLHIH 241 (581)
T ss_pred hhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 1 0 001 1244554 6655544 566777777777643 5789998553
No 283
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=70.78 E-value=34 Score=40.64 Aligned_cols=58 Identities=16% Similarity=0.351 Sum_probs=37.3
Q ss_pred cCCCccch-hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 005820 184 FGTGHSST-SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (676)
Q Consensus 184 ~g~G~~G~-~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl-n~A~~~~~~li~Iv~dN~~ 249 (676)
|-+|..=+ .+++|.|||+. | -+++++.+. .+.. -+++.+ +.++..++|++++++.-+.
T Consensus 364 id~GIaE~~mvg~AaGlA~~----G-~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~ 423 (641)
T PRK12571 364 FDVGIAEQHAVTFAAGLAAA----G-LKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGL 423 (641)
T ss_pred cccCccHHHHHHHHHHHHHC----C-CEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCc
Confidence 34444333 36678888863 2 244555544 4554 688887 6688999999999976663
No 284
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=68.95 E-value=37 Score=40.15 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl-n~A~~~~~~li~Iv~dN~~ 249 (676)
.++.|.|||++ ..++|+-+ -+.+.. -++|-+ +.++.+++|++++....+.
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~ 414 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGI 414 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 36678887763 33444444 556654 677776 5678889999999987774
No 285
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=68.39 E-value=21 Score=37.93 Aligned_cols=90 Identities=14% Similarity=0.213 Sum_probs=48.5
Q ss_pred eeEEeec--hhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCC--ChhhHhHhhcCCCCEE--EecCCHHHHHH
Q 005820 466 KPFCAIY--SSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFMACLPNMVV--MAPSDEAELFH 539 (676)
Q Consensus 466 ~p~~~t~--~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~--~~~d~a~~~~iP~l~V--~~Psd~~E~~~ 539 (676)
+++++++ ..|.+-.+-+-++.++..++||++++...++ +...++.. ...|++-...--|+.. +.=.|+.++..
T Consensus 127 ~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~-~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~ 205 (293)
T cd02000 127 RVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGY-AISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYE 205 (293)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCe-eccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHH
Confidence 4555554 3343322223356788999999999866563 32222221 1223322222123333 23346788888
Q ss_pred HHHHHHH---hCCCCeEEEe
Q 005820 540 MVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 540 ~~~~al~---~~~~P~~ir~ 556 (676)
.++.|++ ..++|++|-.
T Consensus 206 a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 206 AAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHHHHHccCCCEEEEE
Confidence 7777764 3568998855
No 286
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=67.08 E-value=66 Score=31.31 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=26.6
Q ss_pred hhhc-CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEE
Q 005820 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVV 361 (676)
Q Consensus 321 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~ 361 (676)
+..+ |+.++.| .|..++..+++.+-+.+.++|++|...
T Consensus 133 ~~~iPg~~v~~P---sd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVVP---SDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE----SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccccccC---CCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 4454 7888878 677788888887765334799998765
No 287
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=66.82 E-value=30 Score=29.05 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=40.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 588 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 588 dv~Iva~Gs-~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
++.|++.+. ....|++.+..|++.|+.+.+ |.+. +.+....-..-....+.+|++.+.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcc
Confidence 567777765 457899999999999999977 5453 455554443344566788888754
No 288
>PLN02790 transketolase
Probab=66.54 E-value=31 Score=41.03 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEEec----CCHHHHHHHHHHHHHhCCC
Q 005820 478 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP----SDEAELFHMVATAAAIDDR 550 (676)
Q Consensus 478 ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~~P----sd~~E~~~~~~~al~~~~~ 550 (676)
.++|.+ +.++.+++| ++++.+.-++ .-+|++... .+++ ..+.++ ||.++.+ .|..++..+++.+.+..++
T Consensus 153 ~~~EAl-~~A~~~~L~nli~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~ 229 (654)
T PLN02790 153 ISNEAA-SLAGHWGLGKLIVLYDDNHI-SIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKEAKAVTDK 229 (654)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEecCCc-cccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 445554 677889997 6767776664 334454332 3333 356665 9999998 4677888888887543578
Q ss_pred CeEEEec
Q 005820 551 PSCFRYP 557 (676)
Q Consensus 551 P~~ir~~ 557 (676)
|++|...
T Consensus 230 P~lI~~~ 236 (654)
T PLN02790 230 PTLIKVT 236 (654)
T ss_pred eEEEEEE
Confidence 9998653
No 289
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=65.71 E-value=30 Score=32.57 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=34.5
Q ss_pred chhhHHHHHHHHHchhcCCCCeEEEEE-cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 190 STSISAGLGMAVGRDLKGRKNNVVAVI-GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 190 G~~ls~A~G~AlA~~~~~~~~~vv~vi-GDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
..+..+|.|++.+.. +.-++... |=|.++ ..+++..|...+.|+++|.-+..
T Consensus 44 ~~A~~~A~g~~~~~~----~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 44 QGAVGMADGYARATG----KPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHHHHC----CCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCc
Confidence 344667777776632 22244444 566555 66889999888999999986654
No 290
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=64.35 E-value=43 Score=39.68 Aligned_cols=49 Identities=10% Similarity=0.261 Sum_probs=32.0
Q ss_pred hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 005820 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (676)
Q Consensus 193 ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl-n~A~~~~~~li~Iv~dN~~ 249 (676)
+++|.|+|+. | -+++++++ +.+.. -+++-+ +.++..++|++++++..+.
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~-RA~DQI~~dva~~~lpV~~v~~~aG~ 461 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAIDRAGL 461 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHH-HHHHHHHHHHhhcCCCEEEEEeCCcc
Confidence 5677777764 3 24444543 44443 566665 5667889999999987773
No 291
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=64.18 E-value=19 Score=38.55 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred HHHHHHHHhc----CCeeEEe-echhHH--HHHHHHHHHhhhcCCCCEEEEeecCCC-cC---CCCCCCCChhhHhHhhc
Q 005820 454 VTFAAGLACE----GLKPFCA-IYSSFM--QRAYDQVVHDVDLQKLPVRFAMDRAGL-VG---ADGPTHCGSFDVTFMAC 522 (676)
Q Consensus 454 v~~A~GlA~~----G~~p~~~-t~~~Fl--~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G---~dG~tH~~~~d~a~~~~ 522 (676)
+.+|+|.|++ |...++- ++.+.. +-.+-.-+|.++..++||+|++..-++ .. ....+-....+.+-.-.
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~g 186 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYG 186 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTT
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccC
Confidence 5555566664 5444333 344432 222222368899999999999955443 11 11111112333333334
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 523 LPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 523 iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
+|++. +.=.|+.++...++.|++ ..++|++|-.
T Consensus 187 ip~~~-VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 187 IPGIR-VDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SEEEE-EETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred CcEEE-ECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 66654 466889999888888876 3568998854
No 292
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=63.53 E-value=52 Score=31.11 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=35.0
Q ss_pred ccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 188 HSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 188 ~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
|=..+..+|.|.+.+ +.. .++..-|-|..+ ...+|..|.....|+++|+-+-.
T Consensus 49 ~E~~A~~~A~g~~r~----~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 49 SEHAAAEAAIGASAA----GAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred CHHHHHHHHHHHHhh----CCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 333445666666654 222 455566788776 55778888877799999996654
No 293
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=63.48 E-value=35 Score=33.01 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=33.4
Q ss_pred ccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEEC
Q 005820 188 HSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246 (676)
Q Consensus 188 ~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~d 246 (676)
|=..+.-+|.|.|.+. ++-..+++-.|=|..+ ..-++..|..-+.||++|.-+
T Consensus 43 hE~~A~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~ 95 (162)
T cd07037 43 DERSAAFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTAD 95 (162)
T ss_pred ChHHHHHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECC
Confidence 3333456777777643 3344444444677666 345677777778999999854
No 294
>PTZ00089 transketolase; Provisional
Probab=63.12 E-value=65 Score=38.44 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEEecC----CHHHHHHHHHHHHHhCCC
Q 005820 478 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS----DEAELFHMVATAAAIDDR 550 (676)
Q Consensus 478 ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~~Ps----d~~E~~~~~~~al~~~~~ 550 (676)
.++|.+ +.++..++| ++++.+.-++ .-+|+++-. .+++ ..+.++ ||.++.+. |..++...++.+....++
T Consensus 164 ~~~EAl-~~A~~~~L~nLi~i~d~N~~-~i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~~a~~~~~~ 240 (661)
T PTZ00089 164 VSQEAL-SLAGHLGLEKLIVLYDDNKI-TIDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIEEAKKSKGK 240 (661)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEECCCc-ccccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 456654 567888987 6677777664 445666532 2333 356665 99999984 666777777777553468
Q ss_pred CeEEEec
Q 005820 551 PSCFRYP 557 (676)
Q Consensus 551 P~~ir~~ 557 (676)
|++|...
T Consensus 241 P~~I~~~ 247 (661)
T PTZ00089 241 PKLIIVK 247 (661)
T ss_pred cEEEEEE
Confidence 9998663
No 295
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=62.29 E-value=58 Score=36.07 Aligned_cols=82 Identities=12% Similarity=0.222 Sum_probs=60.3
Q ss_pred eEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC---CEEEEEcCCCCCCH---HH
Q 005820 581 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH---EVLITVEEGSIGGF---GS 654 (676)
Q Consensus 581 ~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~---~~vIvvEe~~~gG~---gs 654 (676)
.++.+|.+|.++..|.--..--+.+ +..|.++.+++..+=+|+|.+.+.+.+++. +.|.++..-.+.|. -.
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia---~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIA---ERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHH---HHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 4567788999999999887755554 456899999999999999999999988743 44555543345554 34
Q ss_pred HHHHHHHHcCC
Q 005820 655 HVVQFLAQDGL 665 (676)
Q Consensus 655 ~v~~~l~~~~~ 665 (676)
+|+..+.+.|.
T Consensus 152 ~I~~~~k~~g~ 162 (383)
T COG0075 152 EIAKAAKEHGA 162 (383)
T ss_pred HHHHHHHHcCC
Confidence 56666666664
No 296
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=61.11 E-value=37 Score=36.56 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=47.1
Q ss_pred eEEeechhHH---HHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCC-hhhHh-Hhh--cCCCCEEEecCCHHHHHH
Q 005820 467 PFCAIYSSFM---QRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG-SFDVT-FMA--CLPNMVVMAPSDEAELFH 539 (676)
Q Consensus 467 p~~~t~~~Fl---~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~-~~d~a-~~~--~iP~l~V~~Psd~~E~~~ 539 (676)
..++.|.+.. -..|+. +|.+++++|||+|++-..++ |. |.+|.- .-+.. |.| .|||++| .=.|.--++.
T Consensus 189 v~~alYGDGAaNQGQ~fEa-~NMA~LW~LP~IFvCENN~y-GM-GTs~~Rasa~teyykRG~yiPGl~V-dGmdvlaVr~ 264 (394)
T KOG0225|consen 189 VCFALYGDGAANQGQVFEA-FNMAALWKLPVIFVCENNHY-GM-GTSAERASASTEYYKRGDYIPGLKV-DGMDVLAVRE 264 (394)
T ss_pred eEEEEeccccccchhHHHH-hhHHHHhCCCEEEEEccCCC-cc-CcchhhhhcChHHHhccCCCCceEE-CCcchhhHHH
Confidence 3444588775 133444 48899999999999955442 32 333321 22222 222 3888765 2223333333
Q ss_pred HHHHHHH---hCCCCeEEEec
Q 005820 540 MVATAAA---IDDRPSCFRYP 557 (676)
Q Consensus 540 ~~~~al~---~~~~P~~ir~~ 557 (676)
..+.|.+ ..++|.++-+.
T Consensus 265 a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 265 ATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred HHHHHHHHHhcCCCCEEEEEe
Confidence 3333332 35789887543
No 297
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=60.35 E-value=64 Score=36.41 Aligned_cols=206 Identities=14% Similarity=0.100 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeccc----c--CccchhhhhhhCCCce-eeccccHHHHHHHHHHHHhcC--CeeEE
Q 005820 399 QSYTTYFAEALIAEAEVDKDVVAIHAAM----G--GGTGLNLFLRRFPTRC-FDVGIAEQHAVTFAAGLACEG--LKPFC 469 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~iv~i~aD~----~--gs~~l~~f~~~~p~R~-id~GIaE~~~v~~A~GlA~~G--~~p~~ 469 (676)
.++.+++.+.|...+.....++.+-+.+ | ...|+..--+..|+.. .--|=.||+|+-+|+++|..- .|-+.
T Consensus 7 lT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~A 86 (617)
T COG3962 7 LTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYA 86 (617)
T ss_pred hHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceeeE
Confidence 4555666666666555443322222111 1 1124433333445443 455778999999999999863 33333
Q ss_pred ee--chhHHHHHHHHHHHhhh---cCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecC--------CHH
Q 005820 470 AI--YSSFMQRAYDQVVHDVD---LQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPS--------DEA 535 (676)
Q Consensus 470 ~t--~~~Fl~ra~dqi~~~~a---~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Ps--------d~~ 535 (676)
++ ..+..... +..++ -.++||.+.= ..-+ .-..-|--|+.||..-. .+---..+.|- -|+
T Consensus 87 ~tsSiGPGA~Nm----vTaAalA~~NrlPvLllP-gDvfA~R~PDPVLQQ~E~~~d~-~it~NDcfrPVSRYfDRItRPE 160 (617)
T COG3962 87 VTSSIGPGAANM----VTAAALAHVNRLPVLLLP-GDVFATRQPDPVLQQLEQFGDG-TITTNDCFRPVSRYFDRITRPE 160 (617)
T ss_pred EecccCCcHHHH----HHHHHHHHhhcCceEeec-cchhcccCCChHHHhhhccccC-ceecccccccHHHHhhhcCCHH
Confidence 33 34443222 22333 3689999872 1112 22234666666653211 01111124442 478
Q ss_pred HHHHHHHHHHHh-----CCCCeEEEecCCCCcc--ccCCCCCCCCccccCceeEee----------------c-CCcEEE
Q 005820 536 ELFHMVATAAAI-----DDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKGRILI----------------E-GERVAL 591 (676)
Q Consensus 536 E~~~~~~~al~~-----~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~~gk~~vl~----------------e-G~dv~I 591 (676)
++...+..|++- +-+|+.|-++.. +.. .++|+ .-|+-.-+++.| . .+-++|
T Consensus 161 Ql~sal~rA~~VmTDPA~~GpvTl~l~QD-Vq~eA~Dyp~----~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIv 235 (617)
T COG3962 161 QLMSALPRAMRVMTDPADCGPVTLALCQD-VQAEAYDYPE----SFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIV 235 (617)
T ss_pred HHHHHHHHHHHHhCChhhcCceEEEechh-hhhhhcCCcH----HhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 899888888873 446888888753 111 11221 111111122222 2 245777
Q ss_pred EEechhHHHHHHHHHHHHh-CCCcE
Q 005820 592 LGYGTAVQSCLAASALLES-NGLRL 615 (676)
Q Consensus 592 va~Gs~v~~aleAa~~L~~-~Gi~v 615 (676)
.+-|.....|.++...+.+ .||.+
T Consensus 236 aGGGv~YS~A~~~L~af~E~~~iPv 260 (617)
T COG3962 236 AGGGVLYSGAREALRAFAETHGIPV 260 (617)
T ss_pred ecCceeechHHHHHHHHHHhcCCce
Confidence 7777777888888877754 46654
No 298
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=59.83 E-value=39 Score=36.83 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=46.2
Q ss_pred CeeEEeechhH--HHH-HHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCC--ChhhH---hHhhcCCCCEEEecCCHH
Q 005820 465 LKPFCAIYSSF--MQR-AYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHC--GSFDV---TFMACLPNMVVMAPSDEA 535 (676)
Q Consensus 465 ~~p~~~t~~~F--l~r-a~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~--~~~d~---a~~~~iP~l~V~~Psd~~ 535 (676)
-+++++++.+. .+- .++. ++.++..++||++++...++ .+. +++. ...|+ +-.-.+|++.| .=.|..
T Consensus 157 ~~vvv~~~GDGa~~~G~~~Ea-ln~A~~~~LPvifvv~NN~~~i~~--~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~ 232 (341)
T CHL00149 157 LRVTACFFGDGTTNNGQFFEC-LNMAVLWKLPIIFVVENNQWAIGM--AHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVL 232 (341)
T ss_pred CCEEEEEeCCchhhhcHHHHH-HHHHhhcCCCEEEEEEeCCeeeec--chhheeCCccHHHHHHhCCCCEEEE-eCCCHH
Confidence 45666665443 311 1222 46788899999999866553 221 2211 12233 22224666655 334655
Q ss_pred HHHHHHHHHHH---hCCCCeEEEe
Q 005820 536 ELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 536 E~~~~~~~al~---~~~~P~~ir~ 556 (676)
++...++.|++ ..++|++|-.
T Consensus 233 av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 233 AVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEE
Confidence 55544444443 2578988854
No 299
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=59.13 E-value=38 Score=28.17 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=45.7
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--ccCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
+..+|+|.+. +.-..|..|.+.|++.|++.+.+|+..- -+.+.+.+.. .+.. +|.++....||+ ..|..+|
T Consensus 6 ~~~~V~ly~~-~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP-~i~i~g~~igG~-~~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFTK-PGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVP-QVFIGGKLIGGS-DELEAYL 78 (79)
T ss_pred CCCCEEEEEC-CCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcC-eEEECCEEEcCH-HHHHHHh
Confidence 4456776664 7778999999999999999999997631 1223343332 2333 445665557997 4555554
No 300
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=59.05 E-value=74 Score=38.05 Aligned_cols=58 Identities=12% Similarity=0.294 Sum_probs=36.8
Q ss_pred cCCCccc-hhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH-HHhhhcCCCEEEEEECCCC
Q 005820 184 FGTGHSS-TSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM-NNAGYLDSDMIVILNDNKQ 249 (676)
Q Consensus 184 ~g~G~~G-~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl-n~A~~~~~~li~Iv~dN~~ 249 (676)
|-.|..= +.++.|.|||+. | -++|++++. .+.. -+|+-+ +.++..++|++++++..+.
T Consensus 401 fdvGIAEq~~vg~AaGLA~~----G-~kPvv~~fs--~Fl~-RA~DQI~~dval~~lpVv~v~~~aG~ 460 (677)
T PLN02582 401 FDVGIAEQHAVTFAAGLACE----G-LKPFCAIYS--SFLQ-RGYDQVVHDVDLQKLPVRFAMDRAGL 460 (677)
T ss_pred cccCcCHHHHHHHHHHHHHC----C-CeEEEEecH--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCc
Confidence 4444332 236677777763 3 355556543 5543 577754 7778889999999987764
No 301
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=58.95 E-value=68 Score=35.19 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=24.4
Q ss_pred hhhc-CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEE
Q 005820 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360 (676)
Q Consensus 321 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 360 (676)
++.+ |+.++.| .|..++..+++.+-+ .++|++|..
T Consensus 160 lr~iPnl~V~~P---ad~~e~~~~l~~a~~--~~gPv~ir~ 195 (356)
T PLN02683 160 YSSVPGLKVLAP---YSSEDARGLLKAAIR--DPDPVVFLE 195 (356)
T ss_pred HhcCCCCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 4443 7788888 566777777777765 468999864
No 302
>PRK05899 transketolase; Reviewed
Probab=58.89 E-value=1.1e+02 Score=36.36 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=54.0
Q ss_pred eeEEeec--hhHHH-HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCC-ChhhH-hHhhcCCCCEEEecC--CHHHH
Q 005820 466 KPFCAIY--SSFMQ-RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHC-GSFDV-TFMACLPNMVVMAPS--DEAEL 537 (676)
Q Consensus 466 ~p~~~t~--~~Fl~-ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~-~~~d~-a~~~~iP~l~V~~Ps--d~~E~ 537 (676)
+.++++. ..|.. ..++.+ +.++..++| ++++++..++ +.++++.. ...|+ ..++++ |+.++.-. |..++
T Consensus 151 ~~v~~v~GDG~~~~g~~~Eal-~~A~~~~L~~li~v~dnN~~-~~~~~~~~~~~~~~~~~~~a~-G~~~~~VdG~d~~~l 227 (624)
T PRK05899 151 HYTYVLCGDGDLMEGISHEAC-SLAGHLKLGNLIVIYDDNRI-SIDGPTEGWFTEDVKKRFEAY-GWHVIEVDGHDVEAI 227 (624)
T ss_pred CeEEEEECcchhhchHHHHHH-HHHHHhCCCCEEEEEECCCC-cccccccccccccHHHHhccC-CCeEEEECCCCHHHH
Confidence 4455553 34432 224443 456778998 6666676664 33344332 12333 345554 88887766 89999
Q ss_pred HHHHHHHHHhCCCCeEEEec
Q 005820 538 FHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 538 ~~~~~~al~~~~~P~~ir~~ 557 (676)
...++.+.+ .++|++|...
T Consensus 228 ~~al~~a~~-~~~P~vI~v~ 246 (624)
T PRK05899 228 DAAIEEAKA-STKPTLIIAK 246 (624)
T ss_pred HHHHHHHHh-cCCCEEEEEE
Confidence 999999876 4689988654
No 303
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=58.80 E-value=53 Score=37.53 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCEEEEeccccCccchhhhhhhCCC-ceeeccccHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHHHHHhhhcCCCCE
Q 005820 417 KDVVAIHAAMGGGTGLNLFLRRFPT-RCFDVGIAEQHAVTFAAGLAC-EGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPV 494 (676)
Q Consensus 417 ~~iv~i~aD~~gs~~l~~f~~~~p~-R~id~GIaE~~~v~~A~GlA~-~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV 494 (676)
+.|+.+-.|..-+. |+.+ ..+|+ |++.. -.|-++.=+|=|+|. .|.-.++.||+..-.-|++-|.- +--.++||
T Consensus 20 ~~iFGVPGDyNL~l-LD~i-~~~~~lrWvGn-~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA~NGIAG-SYAE~vpV 95 (557)
T COG3961 20 KSIFGVPGDYNLSL-LDKI-YSVPGLRWVGN-ANELNAAYAADGYARLNGISALVTTFGVGELSALNGIAG-SYAEHVPV 95 (557)
T ss_pred ceeeeCCCcccHHH-HHHh-hcCCCceeecc-cchhhhhhhhcchhhhcCceEEEEecccchhhhhcccch-hhhhcCCE
Confidence 35776655543111 2222 23343 55554 579999999999997 48888999999887777554421 11258999
Q ss_pred EEEeecCCC--cCCCCCCCCC--hhhHh-HhhcCCCCE----EEecCC--HHHHHHHHHHHHHhCCCCeEEEecC
Q 005820 495 RFAMDRAGL--VGADGPTHCG--SFDVT-FMACLPNMV----VMAPSD--EAELFHMVATAAAIDDRPSCFRYPR 558 (676)
Q Consensus 495 ~iv~~~~G~--~G~dG~tH~~--~~d~a-~~~~iP~l~----V~~Psd--~~E~~~~~~~al~~~~~P~~ir~~r 558 (676)
+.+...+-- .+..-.-||. ..|.. |++..-++. .+.|.+ +.|...++++++. .++|+||-+|-
T Consensus 96 vhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~-~~RPvYI~lP~ 169 (557)
T COG3961 96 VHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALK-QRRPVYIGLPA 169 (557)
T ss_pred EEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHH-hcCCeEEEcch
Confidence 888632211 1222233443 22222 333222221 344554 7889999999986 68999999875
No 304
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=58.38 E-value=33 Score=29.25 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=41.1
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcC
Q 005820 588 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 588 dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe 646 (676)
+|.|+..|. ....|.+.++.|++.|+.+.+-+ . -..+....-.......+.+|++-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~-~-~~~~~k~~~~a~~~g~p~~iiiG~ 61 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD-S-DKSLGKQIKYADKLGIPFIIIIGE 61 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES-S-SSTHHHHHHHHHHTTESEEEEEEH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC-C-CCchhHHHHHHhhcCCeEEEEECc
Confidence 578899988 44788999999999999988876 3 344444444444556678887753
No 305
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=57.82 E-value=50 Score=37.44 Aligned_cols=120 Identities=26% Similarity=0.277 Sum_probs=68.2
Q ss_pred hhhhhCCCceeeccccHHHHHH--HHHHHHhc-CCeeEEee--chhHHHHHHHHHHHhhhcCCCCEEEEee-cCCCcCCC
Q 005820 434 LFLRRFPTRCFDVGIAEQHAVT--FAAGLACE-GLKPFCAI--YSSFMQRAYDQVVHDVDLQKLPVRFAMD-RAGLVGAD 507 (676)
Q Consensus 434 ~f~~~~p~R~id~GIaE~~~v~--~A~GlA~~-G~~p~~~t--~~~Fl~ra~dqi~~~~a~~~lpV~iv~~-~~G~~G~d 507 (676)
-+..+.|-|.+|-|--=..-|| +|.+++.. =.+.++++ -+.|-.-++| +..++..++||+++.. ..|++|.|
T Consensus 414 ~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~d 491 (571)
T KOG1185|consen 414 LLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGLD 491 (571)
T ss_pred hccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccccC
Confidence 4666778999998754333222 33333332 23445555 4556445555 3456777999888774 66765533
Q ss_pred --CCCCCC----hhhHhHhhcCC-----------CCEEEecCCHHHHHHHHHHHHHhCCCCeEEE
Q 005820 508 --GPTHCG----SFDVTFMACLP-----------NMVVMAPSDEAELFHMVATAAAIDDRPSCFR 555 (676)
Q Consensus 508 --G~tH~~----~~d~a~~~~iP-----------~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir 555 (676)
|.+.-. ..++....-.+ |.+=+.-.++.|+...++.+.+..++|++|-
T Consensus 492 ~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvIN 556 (571)
T KOG1185|consen 492 DDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVIN 556 (571)
T ss_pred cccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 222111 11111111111 2233444599999999999998777898874
No 306
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=57.62 E-value=35 Score=27.57 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=41.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc-c-CCEEEEEcCCCCCCHHHHH
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-S-HEVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~-~-~~~vIvvEe~~~gG~gs~v 656 (676)
|+|.+. +.-..|..|.+.|++.|++.+.+|+..- |-..+.+.+... . .=..|+++....||+....
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~ 69 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLY 69 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHH
Confidence 444443 5558899999999999999999998743 211122322222 1 2245667876789977544
No 307
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=56.27 E-value=32 Score=33.11 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=43.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcC
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe 646 (676)
++||+-|..-....++++.|++.||.+=.|-+. ..|.+.++.++.+-..++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~---~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGAR---NADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC---cCCHHHHHHHhCCCccEEEecC
Confidence 556677766677788999999999876666554 5789999999988888888874
No 308
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=56.01 E-value=49 Score=30.06 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=40.0
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 587 ERVALLGYG--T-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 587 ~dv~Iva~G--s-~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
.++.|++.+ . ....+++.++.|++.|+.+.+ |.+ +.+....-..-..+.+.+|++.+.
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~-d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKY-DDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEE-eCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 368888888 4 457888899999999999888 433 455444433334566777777754
No 309
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=55.83 E-value=1.4e+02 Score=28.62 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhh-hcCCCEEEEEECCC
Q 005820 190 STSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG-YLDSDMIVILNDNK 248 (676)
Q Consensus 190 G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~-~~~~~li~Iv~dN~ 248 (676)
+.+.++|.|.+++ ..+.++|..+=|-- ...-++..|. ....||++|+=.-+
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg 95 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRG 95 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4556677776643 35567888888833 4566777777 66799999994443
No 310
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=54.44 E-value=50 Score=36.57 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=52.4
Q ss_pred EechhHHHHHHHHHHHHhCCCcEEEEEccccCc------------------------Cc-HH----HHHHHhccCCEEEE
Q 005820 593 GYGTAVQSCLAASALLESNGLRLTVADARFCKP------------------------LD-HA----LIRSLAKSHEVLIT 643 (676)
Q Consensus 593 a~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P------------------------~d-~e----~i~~~~~~~~~vIv 643 (676)
.||+.-..|...++.|.+.|++|.++++..-.+ .+ .. .+..+....+.+.+
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~v 335 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTINGGAHPPIQTALGYVLALAPKNKLAGV 335 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcccCCCCchHHHHHHHHHhccCcCceEEE
Confidence 456666677777777777777777777664311 11 11 12223334466677
Q ss_pred EcCC-CCCCHHHHHHHHHHHcCC---CC-CccccccC
Q 005820 644 VEEG-SIGGFGSHVVQFLAQDGL---LD-GTVKVRSE 675 (676)
Q Consensus 644 vEe~-~~gG~gs~v~~~l~~~~~---ld-~~~~~~~~ 675 (676)
++.. ..|+-...|.+.+.+.|+ .+ =.+|++|.
T Consensus 336 fgS~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~P~ 372 (388)
T COG0426 336 FGSYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFRPT 372 (388)
T ss_pred EeccCCCCcchHHHHHHHHhcCcEEeccceEEEecCC
Confidence 7754 366777788888988887 34 67888886
No 311
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=54.08 E-value=34 Score=33.35 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=34.9
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIv 643 (676)
+|+.++||+.|.++... +++.|.++|.++.+++-.+ +.+.+.++..+.||+
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~~------~~l~~~l~~aDiVIs 93 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSKT------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECCc------hhHHHHHhhCCEEEE
Confidence 46789999999886542 4566777888888888442 345556666666654
No 312
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=53.43 E-value=20 Score=32.48 Aligned_cols=42 Identities=33% Similarity=0.556 Sum_probs=22.3
Q ss_pred hhhcCceee-ccCCCCCH-HHHHHHHHHhhhcCCCCcEEEEEEec
Q 005820 321 FEELGLYYI-GPVDGHNV-DDLVAILEEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 321 fea~G~~~~-~~vdGhd~-~~l~~al~~a~~~~~~~P~lI~v~T~ 363 (676)
.+++|+.|+ -||++.++ ++-+++|.++-+. .++|+++||+|=
T Consensus 53 a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~sG 96 (110)
T PF04273_consen 53 AEALGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRSG 96 (110)
T ss_dssp HHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SCS
T ss_pred HHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCCC
Confidence 677888774 26666554 3444555554432 478999999853
No 313
>PRK10638 glutaredoxin 3; Provisional
Probab=52.89 E-value=42 Score=28.12 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=39.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCCHHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG~gs 654 (676)
.|+|.+. .....|..|.+.|++.|+..+++|+..-... .+.+.+.. ..+=.+|+++....||+..
T Consensus 3 ~v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g~~igG~~~ 68 (83)
T PRK10638 3 NVEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDAQHIGGCDD 68 (83)
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 3555553 3447899999999999999999998632111 12233322 1122345566556899853
No 314
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=52.76 E-value=31 Score=31.32 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=38.1
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~ 638 (676)
|++|.+. .....|.+|.+.|+++|++.+++|+.. .|++.+.+.++++..
T Consensus 1 ~i~iy~~-p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~ 49 (113)
T cd03033 1 DIIFYEK-PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDL 49 (113)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHc
Confidence 3454444 344678899999999999999999885 788999888877644
No 315
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=51.66 E-value=55 Score=37.32 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=83.6
Q ss_pred HHHHHHHHHHc-C-CCEEEEeccccCccchh--hhhhhCCCceeecc-ccHHHHHHHHHHHHhc-CCeeEEeechhHHHH
Q 005820 405 FAEALIAEAEV-D-KDVVAIHAAMGGGTGLN--LFLRRFPTRCFDVG-IAEQHAVTFAAGLACE-GLKPFCAIYSSFMQR 478 (676)
Q Consensus 405 ~~~aL~~~~~~-d-~~iv~i~aD~~gs~~l~--~f~~~~p~R~id~G-IaE~~~v~~A~GlA~~-G~~p~~~t~~~Fl~r 478 (676)
+++.|.+.+.+ + +.++.+..| ++|. ++-.+.|+ +-.+| -.|-++.=+|=|+|.. |.-.++.||+..-.-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGD----FNL~LLD~l~~~~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLS 80 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGD----FNLSLLDKLYAVPG-LRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELS 80 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCc----ccHHHHHHhhhcCC-ceeecccchhhhhhhhcchhhhcCceEEEEEeccchhh
Confidence 34444444333 3 356655444 4443 33334454 33444 4688988889999985 888888889888777
Q ss_pred HHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCC--hhhHh-HhhcCCCCE--EEecCCHHHHHHHHHHHHH---hC
Q 005820 479 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG--SFDVT-FMACLPNMV--VMAPSDEAELFHMVATAAA---ID 548 (676)
Q Consensus 479 a~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~--~~d~a-~~~~iP~l~--V~~Psd~~E~~~~~~~al~---~~ 548 (676)
|++-|. -+--.++||+.+...+.. .+.+---||- ..|.. +++..-++. +..=-|.+++...++.|++ ..
T Consensus 81 AlNGIA-GsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~ 159 (561)
T KOG1184|consen 81 ALNGIA-GAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKE 159 (561)
T ss_pred hhcccc-hhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHh
Confidence 765442 112358999988633322 1222233542 22332 344333432 2223355666555555544 36
Q ss_pred CCCeEEEecCC
Q 005820 549 DRPSCFRYPRG 559 (676)
Q Consensus 549 ~~P~~ir~~r~ 559 (676)
.+|+||-.|-.
T Consensus 160 ~rPVYi~iP~n 170 (561)
T KOG1184|consen 160 SKPVYIGVPAN 170 (561)
T ss_pred cCCeEEEeecc
Confidence 89999998864
No 316
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=51.31 E-value=76 Score=27.87 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=45.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc----cCCEEEEEcCCCCCCHHHH
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK----SHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~----~~~~vIvvEe~~~gG~gs~ 655 (676)
.+|+|.+. +....|..|.+.|.+.|++.+++|+.. .|--.+....+.+ .+=..|.+.....||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHH
Confidence 46888876 667899999999999999999999874 2322233223321 2324567787678998753
No 317
>PRK12754 transketolase; Reviewed
Probab=51.15 E-value=1.2e+02 Score=36.35 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=46.8
Q ss_pred HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCCh-hhH-hHhhcCCCCEEEec---CCHHHHHHHHHHHHHhCCCC
Q 005820 478 RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCGS-FDV-TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRP 551 (676)
Q Consensus 478 ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~~-~d~-a~~~~iP~l~V~~P---sd~~E~~~~~~~al~~~~~P 551 (676)
..+|.+ +.++..+|| ++++.+.-++ .-+|+|.... +++ .-++++ ||.++.. .|..++...+..+....++|
T Consensus 162 ~~~EA~-~~A~~~kL~nLi~ivD~N~~-~idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~a~~~~~~P 238 (663)
T PRK12754 162 ISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEEARAVTDKP 238 (663)
T ss_pred HHHHHH-HHHHHhCCCCEEEEEEcCCC-ccCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHHHHhcCCCC
Confidence 345543 577889999 5666677664 4566665432 343 244444 7876653 35556666666664445789
Q ss_pred eEEEec
Q 005820 552 SCFRYP 557 (676)
Q Consensus 552 ~~ir~~ 557 (676)
++|...
T Consensus 239 t~I~~~ 244 (663)
T PRK12754 239 SLLMCK 244 (663)
T ss_pred EEEEEE
Confidence 998764
No 318
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=50.30 E-value=1e+02 Score=36.83 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=32.4
Q ss_pred hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 193 ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
+++|.|+|+. + ..++|+ ..-..+.. -+++++.+++..++|+++|.-..+
T Consensus 409 v~~AaGlA~~----g-G~~p~~-~tf~~F~~-r~~~~ir~~a~~~lpV~~v~th~g 457 (653)
T TIGR00232 409 GAIMNGIALH----G-GFKPYG-GTFLMFVD-YARPAIRLAALMKLPVIYVYTHDS 457 (653)
T ss_pred HHHHHHHHHc----C-CCeEEE-EEhHHHHH-HHHHHHHHHHhcCCCEEEEEeCCc
Confidence 5677777763 1 222333 22235544 678899999999999999997665
No 319
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=49.08 E-value=98 Score=29.82 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=32.0
Q ss_pred hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC
Q 005820 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247 (676)
Q Consensus 193 ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN 247 (676)
.-+|.|+|.+. ++-..+++-.|=|.++ ..-++..|..-+.||++|.=+.
T Consensus 51 ~~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~ 99 (164)
T cd07039 51 AFAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQV 99 (164)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCC
Confidence 45666776543 3344455555777776 4456777777789999998544
No 320
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.13 E-value=75 Score=26.06 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=35.3
Q ss_pred cEEEEEechh-HHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHH-hccCCEEEEEc
Q 005820 588 RVALLGYGTA-VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL-AKSHEVLITVE 645 (676)
Q Consensus 588 dv~Iva~Gs~-v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~-~~~~~~vIvvE 645 (676)
++.|++.+.. ...|++.+..|++.|+.+.+.... +.++. .+... ....+.++++.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~-~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKK-QFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHH-HHHHHHHcCCCEEEEEc
Confidence 6778877764 467889999999999988774432 23333 33332 23346667665
No 321
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=47.50 E-value=81 Score=35.62 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=44.9
Q ss_pred CeeEEeechhH--HHHH-HHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHh---HhhcCCCCEEEecCCHHHH
Q 005820 465 LKPFCAIYSSF--MQRA-YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVT---FMACLPNMVVMAPSDEAEL 537 (676)
Q Consensus 465 ~~p~~~t~~~F--l~ra-~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a---~~~~iP~l~V~~Psd~~E~ 537 (676)
-+++++++.+. .+-. ++. ++.++..++||++++...+. .|..-..+....+++ -.-.+|++.| .=.|..++
T Consensus 223 ~~vvv~~~GDGa~~eG~f~Ea-Ln~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av 300 (433)
T PLN02374 223 DDVTLAFFGDGTCNNGQFFEC-LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKV 300 (433)
T ss_pred CCEEEEEECCCccccChHHHH-HHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHH
Confidence 34566665543 2221 333 47788999999999865542 121000011122232 1123455543 34455555
Q ss_pred HHHHHHHHH---hCCCCeEEEe
Q 005820 538 FHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 538 ~~~~~~al~---~~~~P~~ir~ 556 (676)
...+..|++ ..++|++|-.
T Consensus 301 ~~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 301 REVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 544444443 3578988854
No 322
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=47.43 E-value=75 Score=26.66 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=39.2
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 588 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 588 dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
++.|+..+. ....|++.+..|++.|+.+.+-+ .. +.+....-..-....+.++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHHHHHHHhCCCCEEEEECCC
Confidence 577777775 45788889999999999888743 32 455555433334455788888753
No 323
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=46.76 E-value=69 Score=30.23 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=36.9
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCC--cEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 589 VALLGYGTAV----QSCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 589 v~Iva~Gs~v----~~aleAa~~L~~~Gi--~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
++|+++|+.. .....+++.|++... .++++|..+.- .+.+. .+.+.+.+|+|+..
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~~---~~l~~-~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTAG---MEVMF-RARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHHH-HhcCCCEEEEEEeC
Confidence 4688888876 355677788876533 48899988763 33333 33467888888874
No 324
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=46.67 E-value=2.5e+02 Score=32.71 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=31.5
Q ss_pred cCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC
Q 005820 206 KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247 (676)
Q Consensus 206 ~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN 247 (676)
+..|=.|.++-+|-..+ -++.||+.+|..-+.|+++-+|-=
T Consensus 223 ~vtDIvVLVVAadDGVm-pQT~EaIkhAk~A~VpiVvAinKi 263 (683)
T KOG1145|consen 223 NVTDIVVLVVAADDGVM-PQTLEAIKHAKSANVPIVVAINKI 263 (683)
T ss_pred ccccEEEEEEEccCCcc-HhHHHHHHHHHhcCCCEEEEEecc
Confidence 34577777888877665 378999999999889988877643
No 325
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=46.53 E-value=40 Score=31.46 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEcccc-CcC-------------cHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFC-KPL-------------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l-~P~-------------d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
.....+..+++.|++.|++++++|++-. .|+ |.+.+.+.++..+.+|++=--+.|++.+.+..++
T Consensus 15 ~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 15 NTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHH
Confidence 3456666777888888999999999976 221 2234455566777777665445677776665554
No 326
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.82 E-value=88 Score=26.43 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=39.4
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 588 RVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 588 dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
.++|+..+. ....|++.++.|++.|+++.+ |.+. +.+....-..-....+.+|++-+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccchhHHHhcCCCEEEEECCc
Confidence 467777765 457888999999999999987 5442 344444433334566777777653
No 327
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=44.48 E-value=1.8e+02 Score=31.72 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=53.0
Q ss_pred eeEEeechhHHH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEEec---CCHHHH
Q 005820 466 KPFCAIYSSFMQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAEL 537 (676)
Q Consensus 466 ~p~~~t~~~Fl~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~~P---sd~~E~ 537 (676)
+.+|-+--.=++ ..++.+ ..++..++. ++++.|.-++ ..||+|-.. .+|+ .-++++ ||.|+.- .|.+++
T Consensus 145 ~vy~l~GDGel~EG~~~EA~-~~A~~~~L~nLi~i~D~N~~-q~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i 221 (332)
T PF00456_consen 145 RVYVLMGDGELQEGSVWEAA-SLAGHYKLDNLIVIYDSNGI-QIDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAI 221 (332)
T ss_dssp -EEEEEEHHHHHSHHHHHHH-HHHHHTT-TTEEEEEEEESE-ETTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHH
T ss_pred eEEEEecCccccchhhHHHH-HHHHHhCCCCEEEEEecCCc-ccCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHH
Confidence 344444332343 445554 356777887 6666676664 456666432 2333 245554 9988876 688888
Q ss_pred HHHHHHHHHhCCCCeEEEecC
Q 005820 538 FHMVATAAAIDDRPSCFRYPR 558 (676)
Q Consensus 538 ~~~~~~al~~~~~P~~ir~~r 558 (676)
...+..|-...++|++|....
T Consensus 222 ~~A~~~a~~~~~kP~~Ii~~T 242 (332)
T PF00456_consen 222 YAAIEEAKASKGKPTVIIART 242 (332)
T ss_dssp HHHHHHHHHSTSS-EEEEEEE
T ss_pred HHHHHHHHhcCCCCceeecce
Confidence 888888866558999997754
No 328
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=43.48 E-value=54 Score=26.92 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHHHHHHHcCCCC
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLD 667 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld 667 (676)
+.-..|.+|.+.|++.|+..+.+|+..- |-..+.+.+.. ..+=.+|+++....||+.+... +.++|.|+
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~--~~~~g~l~ 76 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYA--LDREGKLD 76 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHH--HHHcCChh
Confidence 5568899999999999999999998642 21122233322 1222456778767899875543 44555444
No 329
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=42.74 E-value=1.8e+02 Score=34.98 Aligned_cols=57 Identities=14% Similarity=0.331 Sum_probs=37.2
Q ss_pred cCCCccc-hhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHH-HhhhcCCCEEEEEECCC
Q 005820 184 FGTGHSS-TSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMN-NAGYLDSDMIVILNDNK 248 (676)
Q Consensus 184 ~g~G~~G-~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln-~A~~~~~~li~Iv~dN~ 248 (676)
|-.|..= +.++.|.|||.. | -++|+++.. .+.. -+||-+. .++.+++|+.++++.-+
T Consensus 426 fDvGIAEQhaVt~AAGLA~~----G-~kPvv~iys--tFlq-RAyDQI~~Dval~~lpV~~vid~aG 484 (701)
T PLN02225 426 FNVGMAEQHAVTFSAGLSSG----G-LKPFCIIPS--AFLQ-RAYDQVVHDVDRQRKAVRFVITSAG 484 (701)
T ss_pred cccCccHHHHHHHHHHHHHC----C-CEEEEEeeh--hHHH-HHHHHHHHHHHhhcCCceEEEECCc
Confidence 4444432 246677777753 3 366777774 5654 6677654 46788899999998755
No 330
>PRK12753 transketolase; Reviewed
Probab=42.59 E-value=1.6e+02 Score=35.09 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHH
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSAL 271 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l 271 (676)
.+++|.|||+- +--.++++.+ ..+.. -+++++.++++.++|+++|.-..+ ++. ..||++--
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg-~~~---G~DG~THq-------- 474 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDS-IGL---GEDGPTHQ-------- 474 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCC-ccc---CCCCcccc--------
Confidence 36678888862 1113333333 35655 789999999999999999987776 333 12554421
Q ss_pred hhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhc-CceeeccCCCCCHHHHHHHHHHhhhc
Q 005820 272 SRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEVKNT 350 (676)
Q Consensus 272 ~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~-G~~~~~~vdGhd~~~l~~al~~a~~~ 350 (676)
.+++++- ++++ |+.++.|. |..++..+++.+.+.
T Consensus 475 -------------------------~iedla~-----------------lR~iPn~~v~~Pa---D~~E~~~~~~~al~~ 509 (663)
T PRK12753 475 -------------------------PVEQLAS-----------------LRLTPNFSTWRPC---DQVEAAVAWKLAIER 509 (663)
T ss_pred -------------------------cHHHHHH-----------------HhcCCCCEEEccC---CHHHHHHHHHHHHhc
Confidence 1244432 2333 66777784 556666677766542
Q ss_pred CCCCcEEEEEEe
Q 005820 351 KTTGPVLIHVVT 362 (676)
Q Consensus 351 ~~~~P~lI~v~T 362 (676)
.++|+.|....
T Consensus 510 -~~gP~~irl~R 520 (663)
T PRK12753 510 -HNGPTALILSR 520 (663)
T ss_pred -CCCCEEEEecC
Confidence 36899888754
No 331
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=41.69 E-value=2.2e+02 Score=30.77 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=52.5
Q ss_pred eEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC-CEEEEEcCC-CCCCHHHHHHH
Q 005820 581 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH-EVLITVEEG-SIGGFGSHVVQ 658 (676)
Q Consensus 581 ~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~-~~vIvvEe~-~~gG~gs~v~~ 658 (676)
+.+.+|..+.++.+|.-.+. |+|.++..|+.|.++-..+=.-.+-|.|.+-+..+ ..+|+|=.+ ++.|.-+.+.+
T Consensus 87 N~lePgd~vLv~~~G~wg~r---a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~ 163 (385)
T KOG2862|consen 87 NLLEPGDNVLVVSTGTWGQR---AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA 163 (385)
T ss_pred hhcCCCCeEEEEEechHHHH---HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence 45668889999999987765 56666677999999977666667888888765444 344444433 45666555444
Q ss_pred HH
Q 005820 659 FL 660 (676)
Q Consensus 659 ~l 660 (676)
..
T Consensus 164 ~~ 165 (385)
T KOG2862|consen 164 IS 165 (385)
T ss_pred HH
Confidence 33
No 332
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=40.57 E-value=99 Score=29.11 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=37.3
Q ss_pred EEEEEechhH----HHHHHHHHHHHhC---CCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 589 VALLGYGTAV----QSCLAASALLESN---GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 589 v~Iva~Gs~v----~~aleAa~~L~~~---Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
++|+++|+.. .....+++.|++. .-.+++++..+.- .+.+ ..+.+++.+|+||.-
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~~---~~l~-~~l~~~d~viiVDA~ 62 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTLG---LELL-PYIEEADRLIIVDAV 62 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCEEEEEEcc
Confidence 4688888876 4456677778764 3458899988753 3344 334467889999874
No 333
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=39.43 E-value=52 Score=31.87 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=36.6
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhCCC---cEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 587 ERVALLGYGTAV----QSCLAASALLESNGL---RLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 587 ~dv~Iva~Gs~v----~~aleAa~~L~~~Gi---~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
..++|+++|+.+ ..-...+++|++... +++|+|.-+.-|. .+. .+...+.+|+||.-
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~---l~~-~l~~~d~vIIVDav 65 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN---LLG-LLAGYDPVIIVDAV 65 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH---HHH-HhcCCCcEEEEEee
Confidence 468899999865 233456677766533 6889999987543 332 33355567777753
No 334
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=39.37 E-value=1.3e+02 Score=30.02 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=40.2
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhC---CCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 587 ERVALLGYGTAV----QSCLAASALLESN---GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 587 ~dv~Iva~Gs~v----~~aleAa~~L~~~---Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
++++|+++|+.. .....+++.|++. .-.++++|..+.- .+.+ ..+...+.+|+||.-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g---~~ll-~~i~~~d~vIiVDAv 67 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQG---LNLL-GYVESASHLLILDAI 67 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCH---HHHH-HHHcCCCEEEEEECC
Confidence 468999999977 4566778888654 2358999988764 2444 444577888888863
No 335
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=39.11 E-value=97 Score=29.10 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=35.6
Q ss_pred EEEechhH----HHHHHHHHHHHhCCC--cEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 591 LLGYGTAV----QSCLAASALLESNGL--RLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 591 Iva~Gs~v----~~aleAa~~L~~~Gi--~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
|+++|+.. .....+++.|+++.. .++++|..+. ..+.+..+++..+.+|+|+..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~---~~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR---GIHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC---HHHHHHHHHhcCCEEEEEEec
Confidence 67777766 355667778876543 3788887764 244444445567888888874
No 336
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=38.69 E-value=1.6e+02 Score=33.62 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=23.5
Q ss_pred hhhc-CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEE
Q 005820 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIH 359 (676)
Q Consensus 321 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~ 359 (676)
+..+ |+.++.| .|..++...|+.+-+ .++|++|.
T Consensus 275 ~~~iPgl~V~~P---~d~~d~~~ll~~ai~--~~~Pv~il 309 (464)
T PRK11892 275 YSHIPGLKVVAP---YSAADAKGLLKAAIR--DPNPVIFL 309 (464)
T ss_pred HhhCCCCEEEEe---CCHHHHHHHHHHHhh--CCCcEEEE
Confidence 4443 7888888 566677777777765 47899874
No 337
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=38.68 E-value=1.5e+02 Score=31.83 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=48.8
Q ss_pred CeeEEeechh--HHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCC--CChhhH---hHhhcCCCCEEEecCCHHHH
Q 005820 465 LKPFCAIYSS--FMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--CGSFDV---TFMACLPNMVVMAPSDEAEL 537 (676)
Q Consensus 465 ~~p~~~t~~~--Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH--~~~~d~---a~~~~iP~l~V~~Psd~~E~ 537 (676)
-+++++++.+ |.+-.+-+-++.++..++||++++...++ |...++. ....|+ +-.-.+|.+. +.=.|+.++
T Consensus 132 ~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~y-g~s~~~~~~~~~~~~a~~A~a~G~~~~~-Vdg~d~~av 209 (315)
T TIGR03182 132 DNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLY-AMGTSVERSSSVTDLYKRGESFGIPGER-VDGMDVLAV 209 (315)
T ss_pred CCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCc-cccCCHHHHhCCcCHHHHHHhCCCCEEE-ECCCCHHHH
Confidence 3455555433 43222222256788899999999866553 3222221 111222 2222345543 344467777
Q ss_pred HHHHHHHHH---hCCCCeEEEe
Q 005820 538 FHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 538 ~~~~~~al~---~~~~P~~ir~ 556 (676)
...++.|++ ..++|++|-.
T Consensus 210 ~~a~~~A~~~ar~~~gP~lIe~ 231 (315)
T TIGR03182 210 REAAKEAVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHHHHHHHccCCCEEEEE
Confidence 777777764 3568998855
No 338
>PRK10824 glutaredoxin-4; Provisional
Probab=38.57 E-value=64 Score=29.48 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=48.3
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--ccCCEEEEEcCCCCCCHHHHHHHH
Q 005820 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGSHVVQF 659 (676)
Q Consensus 586 G~dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~~~~~vIvvEe~~~gG~gs~v~~~ 659 (676)
...|+|++-|+ ....|..|.+.|.+.|++..++|+-. .|=-.+.+.+.- .+.. -|.|..-..||......
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~-d~~~~~~l~~~sg~~TVP-QIFI~G~~IGG~ddl~~-- 89 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ-NPDIRAELPKYANWPTFP-QLWVDGELVGGCDIVIE-- 89 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC-CHHHHHHHHHHhCCCCCC-eEEECCEEEcChHHHHH--
Confidence 45788888884 67889999999999999999998753 111112232221 2334 35577666899764443
Q ss_pred HHHcCCC
Q 005820 660 LAQDGLL 666 (676)
Q Consensus 660 l~~~~~l 666 (676)
+..+|-|
T Consensus 90 l~~~G~L 96 (115)
T PRK10824 90 MYQRGEL 96 (115)
T ss_pred HHHCCCH
Confidence 3445543
No 339
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=37.80 E-value=48 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=28.5
Q ss_pred ecCCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEcc
Q 005820 584 IEGERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 584 ~eG~dv~Iva~Gs~v-~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
.+..|++||++|... ..--+..+.|+++||.+++.|.+
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 346689999999965 33335567788999999998844
No 340
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=37.29 E-value=1.4e+02 Score=28.80 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=40.0
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhC-C--CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCC
Q 005820 588 RVALLGYGTAV----QSCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSI 649 (676)
Q Consensus 588 dv~Iva~Gs~v----~~aleAa~~L~~~-G--i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~ 649 (676)
+++|+++|+.. .....+++.|++. . -+++++|..+.- .+.+. .+...+.+|+|+....
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~---~~ll~-~l~~~d~vIiVDA~~~ 66 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---MELLG-DMANRDHLIIADAIVS 66 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccH---HHHHH-HHhCCCEEEEEEecCC
Confidence 47899999977 3566788888653 3 358899988763 33333 3346788888987533
No 341
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=36.89 E-value=1.6e+02 Score=23.67 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=43.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
+|+|.+. +.-..|..|.+.|++.|+..+.+|+.. .+ +.+.+.+.. ..+=.+|+++....||.. .|.++|
T Consensus 2 ~v~lys~-~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~~igg~~-~l~~~l 71 (72)
T cd03029 2 SVSLFTK-PGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGELIGGSD-DLEKYF 71 (72)
T ss_pred eEEEEEC-CCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCEEEeCHH-HHHHHh
Confidence 3555554 677889999999999999999999763 22 334444332 222234567766678854 555554
No 342
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=36.62 E-value=2e+02 Score=27.67 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHchhcCCCCeEEEEE--cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 191 TSISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 191 ~~ls~A~G~AlA~~~~~~~~~vv~vi--GDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
.+..+|.|+|.+. ++..+|+. |=|.++ ..-++..|...+.||++|.-+-.
T Consensus 50 ~A~~~A~g~ar~~-----g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~ 101 (172)
T PF02776_consen 50 GAAFMADGYARAT-----GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRP 101 (172)
T ss_dssp HHHHHHHHHHHHH-----SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESS
T ss_pred hhHHHHHHHHHhh-----ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccc
Confidence 3456777777653 34444444 345454 44567777777899999987665
No 343
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=36.55 E-value=1.5e+02 Score=30.58 Aligned_cols=73 Identities=27% Similarity=0.326 Sum_probs=48.4
Q ss_pred cCceeEee-cCCcEEEEEechhHHHHHHHHHHHHhCC--CcEEEEE-cccc-CcCcHHHHHHHhccCCEEEEEcCCCCC
Q 005820 577 VGKGRILI-EGERVALLGYGTAVQSCLAASALLESNG--LRLTVAD-ARFC-KPLDHALIRSLAKSHEVLITVEEGSIG 650 (676)
Q Consensus 577 ~gk~~vl~-eG~dv~Iva~Gs~v~~aleAa~~L~~~G--i~v~VId-~~~l-~P~d~e~i~~~~~~~~~vIvvEe~~~g 650 (676)
+|++.... .++.+++|+-|..+...+..++.+.+.| .+|.++- .++= ..+..+.+.+...+ +.++++++++.|
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~~G 174 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGWKG 174 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCCCc
Confidence 44443332 2445999999999999999999998878 6666655 3322 12445566666544 788888876643
No 344
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=36.41 E-value=1.8e+02 Score=32.07 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHhhhcCCCCEEEEeecCCCcCCCCCCC--CChhhHh-HhhcCCCCEEEecCCHHHHHHHHHHHHH--hCCCCeEEEec
Q 005820 484 VHDVDLQKLPVRFAMDRAGLVGADGPTH--CGSFDVT-FMACLPNMVVMAPSDEAELFHMVATAAA--IDDRPSCFRYP 557 (676)
Q Consensus 484 ~~~~a~~~lpV~iv~~~~G~~G~dG~tH--~~~~d~a-~~~~iP~l~V~~Psd~~E~~~~~~~al~--~~~~P~~ir~~ 557 (676)
+|.++..++||++++...++ +..-++. +...++. ....+|++.| -=.|..++...+..|++ +.++|++|-..
T Consensus 181 ln~A~~~~lPvvfvveNN~~-aist~~~~~~~~~~~~~~~~~~p~~~V-DG~D~~av~~a~~~A~~~aR~~gP~lIe~~ 257 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHY-GMGTAEWRAAKSPAYYKRGDYVPGLKV-DGMDVLAVKQACKFAKEHALSNGPIVLEMD 257 (362)
T ss_pred HHHhhccCcCEEEEEeCCCE-eccCchhhhccchHHHHhhcCCCeEEE-CCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 57889999999999977663 2211221 1122221 1123566544 55677777777777764 13789998653
No 345
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=36.31 E-value=85 Score=28.72 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=37.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCC
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~ 639 (676)
++|..+-++ ..|.+|.+.|+++||..+++|.. -.|++.+.+.+.++...
T Consensus 3 itiy~~p~C-~t~rka~~~L~~~gi~~~~~~y~-~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNC-STCRKALAWLEEHGIEYTFIDYL-KTPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCCC-hHHHHHHHHHHHcCCCcEEEEee-cCCCCHHHHHHHHHHcC
Confidence 455554333 58999999999999999999977 36888988888776544
No 346
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=35.98 E-value=77 Score=35.47 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=52.9
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc---------cCCEEEEEcCCCCCCHHHHH--
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK---------SHEVLITVEEGSIGGFGSHV-- 656 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~---------~~~~vIvvEe~~~gG~gs~v-- 656 (676)
+|+|.+. +....|..|.+.|++.||+-++||+.- .|--.+.+.++-+ .+=..|++.+...||+....
T Consensus 3 ~V~vys~-~~Cp~C~~aK~~L~~~gi~~~~idi~~-~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~~ 80 (410)
T PRK12759 3 EVRIYTK-TNCPFCDLAKSWFGANDIPFTQISLDD-DVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMAR 80 (410)
T ss_pred cEEEEeC-CCCHHHHHHHHHHHHCCCCeEEEECCC-ChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHHH
Confidence 4555554 667889999999999999999999871 1211122333211 11134667766689985443
Q ss_pred ----HHHHHHcCCCCCccccccC
Q 005820 657 ----VQFLAQDGLLDGTVKVRSE 675 (676)
Q Consensus 657 ----~~~l~~~~~ld~~~~~~~~ 675 (676)
...+..-++++.++.+.|-
T Consensus 81 ~g~l~~~~~~~~~~~~~~~~~p~ 103 (410)
T PRK12759 81 AGEVIARVKGSSLTTFSKTYKPF 103 (410)
T ss_pred hCCHHHHhcCCcccccccccCCC
Confidence 3344445556777776663
No 347
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=35.80 E-value=2.8e+02 Score=28.11 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=46.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCc---EEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHHc
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLR---LTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQD 663 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~---v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~ 663 (676)
.++.||--=|.++. |+.+| |+. +.++++. +-+.+.++.++....+++++-+.. .| =++|+..|.++
T Consensus 95 ~~v~iIPgiSS~q~---a~ARl---g~~~~~~~~islH---gr~~~~l~~~~~~~~~~vil~~~~-~~-P~~IA~~L~~~ 163 (210)
T COG2241 95 EEVEIIPGISSVQL---AAARL---GWPLQDTEVISLH---GRPVELLRPLLENGRRLVILTPDD-FG-PAEIAKLLTEN 163 (210)
T ss_pred cceEEecChhHHHH---HHHHh---CCChHHeEEEEec---CCCHHHHHHHHhCCceEEEeCCCC-CC-HHHHHHHHHhC
Confidence 35666653333343 23333 443 5555544 667888888877777777776654 22 46899999999
Q ss_pred CCCCCcc
Q 005820 664 GLLDGTV 670 (676)
Q Consensus 664 ~~ld~~~ 670 (676)
|+.+.++
T Consensus 164 G~~~~~~ 170 (210)
T COG2241 164 GIGDSRV 170 (210)
T ss_pred CCCCceE
Confidence 9765554
No 348
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=35.53 E-value=1e+02 Score=29.30 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=38.5
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhCC----CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 587 ERVALLGYGTAV----QSCLAASALLESNG----LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 587 ~dv~Iva~Gs~v----~~aleAa~~L~~~G----i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
++++|+++|+.. .....++++|++.+ -.++++|..+.-|-....+. .....+.+|+||..
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 468899999977 35667788886422 24889998765431111111 24567888888874
No 349
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=35.44 E-value=2.9e+02 Score=27.33 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHHHh-CCCcEEEEEccccCcCcHHHH---------------HHHhccCCEEEEEcCCCCCCHHHHHHH
Q 005820 595 GTAVQSCLAASALLES-NGLRLTVADARFCKPLDHALI---------------RSLAKSHEVLITVEEGSIGGFGSHVVQ 658 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~-~Gi~v~VId~~~l~P~d~e~i---------------~~~~~~~~~vIvvEe~~~gG~gs~v~~ 658 (676)
|..-..|..+++.+++ .|+++++++++...| .+.. .+.+...+.||+.=--+.|++...+..
T Consensus 13 G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~g~~~~~lk~ 90 (200)
T PRK03767 13 GHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRFGNMAGQMRN 90 (200)
T ss_pred CHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccCCCchHHHHH
Confidence 4455666677788887 899999999874333 2211 233445666665443346889888888
Q ss_pred HHHHcC
Q 005820 659 FLAQDG 664 (676)
Q Consensus 659 ~l~~~~ 664 (676)
++...+
T Consensus 91 fld~~~ 96 (200)
T PRK03767 91 FLDQTG 96 (200)
T ss_pred HHHHhc
Confidence 887654
No 350
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=35.34 E-value=3.4e+02 Score=30.24 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
++++|+|.|+| ..++.+.+.=+.++ ..+|.+..|+...+|++++ +-|+
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~-~~~R 108 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMV-DVNR 108 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEE-Eecc
Confidence 47889999988 67788888888888 8899999999999996544 4466
No 351
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=35.03 E-value=93 Score=25.18 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC-CCCCHHH
Q 005820 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG-SIGGFGS 654 (676)
Q Consensus 597 ~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~-~~gG~gs 654 (676)
.-..|..|.+.|++.|+..+.+|+.. .|-..+.+.+.-..+=.+|+++.. ..+|+..
T Consensus 8 ~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 8 NCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHcCCcccCEEEECCCcEEeccCH
Confidence 34788999999999999999999874 222223333221112244667554 4677653
No 352
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=34.80 E-value=30 Score=31.09 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=25.6
Q ss_pred cCCcEEEEEechhHH-HHHHHHHHHHhCCCcEEEEEcc
Q 005820 585 EGERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~-~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+..|++||++|.... .-.+..+.|++.||.+++.|-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 467999999998753 2345667788999999998844
No 353
>PRK10853 putative reductase; Provisional
Probab=33.90 E-value=63 Score=29.52 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC
Q 005820 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (676)
Q Consensus 597 ~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~ 638 (676)
....|.+|.+.|++.|+.++++|... .|++.+.+.+.++..
T Consensus 9 ~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 9 NCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDEL 49 (118)
T ss_pred CCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHc
Confidence 34678899999999999999999885 788999888877543
No 354
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=33.70 E-value=1.7e+02 Score=28.00 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=36.6
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhCCC-cEEEEEccccCcCcHHHHHHHhc-cCCEEEEEcCC
Q 005820 588 RVALLGYGTAV----QSCLAASALLESNGL-RLTVADARFCKPLDHALIRSLAK-SHEVLITVEEG 647 (676)
Q Consensus 588 dv~Iva~Gs~v----~~aleAa~~L~~~Gi-~v~VId~~~l~P~d~e~i~~~~~-~~~~vIvvEe~ 647 (676)
+++|+++|+.. .....+++.|++... +++++|..+ -|++. +..+.. +.+.+|+||..
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~--~~~i~~~~~d~vIiVDA~ 64 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APEND--IVAIRELRPERLLIVDAT 64 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHH--HHHHHhcCCCEEEEEECC
Confidence 36789999877 455677778865422 588999888 34333 222222 45788888863
No 355
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=33.34 E-value=1.4e+02 Score=27.66 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=35.5
Q ss_pred EEEechhH----HHHHHHHHHHHhCC--CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 591 LLGYGTAV----QSCLAASALLESNG--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 591 Iva~Gs~v----~~aleAa~~L~~~G--i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
|+++|+.. .....++++|++.. -.++++|..+.- .+.+ ..++..+.+|+||..
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~~---~~l~-~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTLG---LELL-DLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhcCCeEEEEECc
Confidence 67778766 34567778887663 468899988762 3333 344457888888874
No 356
>PHA03050 glutaredoxin; Provisional
Probab=33.24 E-value=1.4e+02 Score=26.86 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=44.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCC---cEEEEEccccCcCcH---HHHHHHh-ccCCEEEEEcCCCCCCHHHHHH
Q 005820 586 GERVALLGYGTAVQSCLAASALLESNGL---RLTVADARFCKPLDH---ALIRSLA-KSHEVLITVEEGSIGGFGSHVV 657 (676)
Q Consensus 586 G~dv~Iva~Gs~v~~aleAa~~L~~~Gi---~v~VId~~~l~P~d~---e~i~~~~-~~~~~vIvvEe~~~gG~gs~v~ 657 (676)
...|+|.+. +....|..|.+.|++.|+ ..+++|+.-..+ +. +.+.+.- +.+=..|++..-..||+....+
T Consensus 12 ~~~V~vys~-~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVK-FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEEC-CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 456887776 446788999999999998 788999874322 22 2333332 2222455677656899865443
No 357
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=33.02 E-value=61 Score=35.48 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEEC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILND 246 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~d 246 (676)
++++|+|.++| ..++++.+.|+.+. ..+|.+..|+-...|+++++-+
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~ 106 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIM 106 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEec
Confidence 47889999888 67799999999998 8899999999999998776644
No 358
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.89 E-value=1.2e+02 Score=29.41 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=31.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~ 630 (676)
+++++.|..-..++.+++.|.++|++|.|+-+.-..+++.+.
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~ 70 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDA 70 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHH
Confidence 677888889999999999999999999995554444555543
No 359
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=32.77 E-value=1.2e+02 Score=32.80 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=51.2
Q ss_pred ecCCcEEEEEechhH-HHHHHHHHHHHhCCCc-EEEEEccccCcCcHHHH-----HHHhccCCEEEEEcCCCCCCH
Q 005820 584 IEGERVALLGYGTAV-QSCLAASALLESNGLR-LTVADARFCKPLDHALI-----RSLAKSHEVLITVEEGSIGGF 652 (676)
Q Consensus 584 ~eG~dv~Iva~Gs~v-~~aleAa~~L~~~Gi~-v~VId~~~l~P~d~e~i-----~~~~~~~~~vIvvEe~~~gG~ 652 (676)
+.++ =+|+++|... .+..+|.+.|++.|.. +.++.+.+..|-|.|.+ .++....+..|=+-+|..|-+
T Consensus 145 ~~~k-PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g~~ 219 (347)
T COG2089 145 KKGK-PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLGIL 219 (347)
T ss_pred hcCC-CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccchh
Confidence 3455 5678888655 8888999999998755 99999999999888753 445556677787888887733
No 360
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=32.45 E-value=2.9e+02 Score=22.99 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=44.6
Q ss_pred EEEEEechhHHHHHHHHHHHHh-----CCCcEEEEEccccCcCcHHHHHHHhc---cCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 589 VALLGYGTAVQSCLAASALLES-----NGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~-----~Gi~v~VId~~~l~P~d~e~i~~~~~---~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
|+|.+. +.-..|..|.+.|++ .|+..+.+|+.. .+...+.+.+... .+=..|+++.-..||+. .+.+++
T Consensus 3 v~iy~~-~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~-~~~~~~ 79 (85)
T PRK11200 3 VVIFGR-PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQKHIGGCT-DFEAYV 79 (85)
T ss_pred EEEEeC-CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHH-HHHHHH
Confidence 444443 445778888888887 799999999874 3333445555443 22244567765689875 444455
Q ss_pred HHc
Q 005820 661 AQD 663 (676)
Q Consensus 661 ~~~ 663 (676)
.++
T Consensus 80 ~~~ 82 (85)
T PRK11200 80 KEN 82 (85)
T ss_pred HHh
Confidence 443
No 361
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.29 E-value=2.1e+02 Score=26.04 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=47.8
Q ss_pred EEEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCce---eEeecCCcEEEEEechhHHHHHH
Q 005820 527 VVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKG---RILIEGERVALLGYGTAVQSCLA 603 (676)
Q Consensus 527 ~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~---~vl~eG~dv~Iva~Gs~v~~ale 603 (676)
.|+.|.+.+|+..++++|.+ .+.|+.++-............ ...-+...+- ..+.+....+.+..|.......+
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 48999999999999999965 577888877655432221100 1111222221 22233456778888888887666
Q ss_pred HHH
Q 005820 604 ASA 606 (676)
Q Consensus 604 Aa~ 606 (676)
..+
T Consensus 80 ~l~ 82 (139)
T PF01565_consen 80 ALA 82 (139)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 362
>PRK10026 arsenate reductase; Provisional
Probab=32.27 E-value=1.1e+02 Score=29.08 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCC
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~ 639 (676)
.....|.+|.+.|++.|+.++++|... .|++.+.+++.++..+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 445789999999999999999999875 7889998888776543
No 363
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.15 E-value=1.6e+02 Score=26.53 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=45.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc--------------ccCc--------CcHHHHHHHhccCCEEEEE
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR--------------FCKP--------LDHALIRSLAKSHEVLITV 644 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~--------------~l~P--------~d~e~i~~~~~~~~~vIvv 644 (676)
+++.|+..|.. |..+.+.|++.|+++-+|+-. .+-| ++.+.|.+++++.+... +
T Consensus 3 kkvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~-i 78 (110)
T PF00289_consen 3 KKVLIANRGEI---AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADA-I 78 (110)
T ss_dssp SEEEESS-HHH---HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESE-E
T ss_pred CEEEEECCCHH---HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcc-c
Confidence 35777777776 666666677789998887743 2445 77888888777765332 3
Q ss_pred cCCC-CCCHHHHHHHHHHHcCC
Q 005820 645 EEGS-IGGFGSHVVQFLAQDGL 665 (676)
Q Consensus 645 Ee~~-~gG~gs~v~~~l~~~~~ 665 (676)
--++ .-.....+++.+.+.|+
T Consensus 79 ~pGyg~lse~~~fa~~~~~~gi 100 (110)
T PF00289_consen 79 HPGYGFLSENAEFAEACEDAGI 100 (110)
T ss_dssp ESTSSTTTTHHHHHHHHHHTT-
T ss_pred ccccchhHHHHHHHHHHHHCCC
Confidence 3333 12335566666666664
No 364
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=32.03 E-value=80 Score=28.11 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhcc
Q 005820 598 VQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 637 (676)
Q Consensus 598 v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~ 637 (676)
...|.+|.+.|++.|++++.+|+. =.|++.+.+.++++.
T Consensus 6 C~t~rka~~~L~~~gi~~~~~d~~-k~p~s~~el~~~l~~ 44 (110)
T PF03960_consen 6 CSTCRKALKWLEENGIEYEFIDYK-KEPLSREELRELLSK 44 (110)
T ss_dssp -HHHHHHHHHHHHTT--EEEEETT-TS---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEeehhh-hCCCCHHHHHHHHHH
Confidence 467889999999999999999988 368888888776543
No 365
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=30.82 E-value=97 Score=28.71 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhcc
Q 005820 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 637 (676)
Q Consensus 597 ~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~ 637 (676)
....|.+|.+.|+++|++.+++|..- .|++.+.+.+.++.
T Consensus 10 ~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 10 GCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGN 49 (126)
T ss_pred CCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHH
Confidence 34788999999999999999999874 68889888777654
No 366
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=30.43 E-value=9.3e+02 Score=28.12 Aligned_cols=152 Identities=23% Similarity=0.298 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEee--chhHH
Q 005820 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI--YSSFM 476 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t--~~~Fl 476 (676)
..|..+|.++|... .-+=+++++. ..||-|.-....+++=-..+=|.|.++.=+|.|+|..-.+|++-+ ..+-.
T Consensus 8 t~~a~v~~eeL~r~---GV~~vvicPG-SRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ 83 (566)
T COG1165 8 TLWARVFLEELARL---GVRDVVICPG-SRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAV 83 (566)
T ss_pred HHHHHHHHHHHHHc---CCcEEEECCC-CCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchh
Confidence 34555665554443 3455666654 235556555556676668899999999999999999988887765 33333
Q ss_pred HHHHHHHHHhhhcCCCCEEEEe-ecCC-CcCCCCCCCCChhhHhHhhcCCCCEE--EecCCHHHHHHHHHHHHH------
Q 005820 477 QRAYDQVVHDVDLQKLPVRFAM-DRAG-LVGADGPTHCGSFDVTFMACLPNMVV--MAPSDEAELFHMVATAAA------ 546 (676)
Q Consensus 477 ~ra~dqi~~~~a~~~lpV~iv~-~~~G-~~G~dG~tH~~~~d~a~~~~iP~l~V--~~Psd~~E~~~~~~~al~------ 546 (676)
-.-|-.|+ .+.+.+.|.++.. ||.- +.+. | .-|.+++..+|.+.|+..+ =.|.+..++.+.+++...
T Consensus 84 ANl~PAVi-EA~~srvpLIVLTADRP~EL~~~-G-AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a 160 (566)
T COG1165 84 ANLYPAVI-EANLSRVPLIVLTADRPPELRGC-G-ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQA 160 (566)
T ss_pred hhccHHHH-hhhhcCCceEEEeCCCCHHHhcC-C-CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 33344443 6789999977665 5542 1221 1 2466777889998887654 478888887776665432
Q ss_pred --hCCCCeEEEec
Q 005820 547 --IDDRPSCFRYP 557 (676)
Q Consensus 547 --~~~~P~~ir~~ 557 (676)
...+|+=|-.|
T Consensus 161 ~~~~~GpVHiN~P 173 (566)
T COG1165 161 RTPHAGPVHINVP 173 (566)
T ss_pred cCCCCCceEecCC
Confidence 24567766554
No 367
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=30.29 E-value=2.9e+02 Score=30.52 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
++++|+|.|+| ..++++.+.=+.+. ..+|.+..|+-...|+++++-+..
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~ 108 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRG 108 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecC
Confidence 47888888887 66788887777776 778999999988899888776643
No 368
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=29.93 E-value=3.3e+02 Score=29.10 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=42.4
Q ss_pred cCCCccchh-hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHh-hhcCCCEEEEEECCCC
Q 005820 184 FGTGHSSTS-ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNA-GYLDSDMIVILNDNKQ 249 (676)
Q Consensus 184 ~g~G~~G~~-ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A-~~~~~~li~Iv~dN~~ 249 (676)
|..|.+=+. ++.|.|+|++-+ .-.+++=+.+..+-+||=+.++ ++.++|+-+|.-+-+.
T Consensus 52 ~NvGIaEQ~mvg~AAGLA~~Gk-------~Pfv~tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~ 112 (312)
T COG3958 52 FNVGIAEQDMVGTAAGLALAGK-------KPFVSTFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGV 112 (312)
T ss_pred eecchHHHHHHHHHHHHHhcCC-------CceeechHHHHHHHHHHHHHHHhhhccCCeEEEEecCCc
Confidence 455555443 678888887633 3344566888888899998665 5777999999988873
No 369
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=29.90 E-value=64 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.1
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEcc
Q 005820 587 ERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 587 ~dv~Iva~Gs~v-~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
.+++||++|... ..--+..+.|++.||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 789999999865 23335567888999999998844
No 370
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=29.74 E-value=94 Score=27.68 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCC
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE 639 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~ 639 (676)
+....|..|.+.|++.|+..+++|+.. .|++.+.+.++++..+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 344788999999999999999999874 7889999988876554
No 371
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=29.74 E-value=4.8e+02 Score=29.10 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
++++++|.|++ ..++++.+.=..++ ..+|.|..|+...+|+++++ -|+
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv-~~R 109 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAI-GNR 109 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEE-CCC
Confidence 47888888887 66788887777777 78899999999999977765 555
No 372
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=29.63 E-value=1.4e+02 Score=31.74 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=35.9
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc----------cCcCcHHHHHHHhccCCEEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF----------CKPLDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~----------l~P~d~e~i~~~~~~~~~vIv 643 (676)
.|+.+.|+++|.+.. .+++.|+..|.++.|++-.. ..+++.+.+.+.+++.+.||.
T Consensus 150 ~gk~v~IiG~G~iG~---avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGFGRTGM---TIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcChHHHH---HHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 367899999998554 45566667788888877432 233444455566666665553
No 373
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=29.56 E-value=3.2e+02 Score=26.08 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=33.3
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEE--cCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVI--GDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~vi--GDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
-|=..+.-+|.|.|.+. +..+|++ |=|..+ ..-++..|..-..||++|.=+..
T Consensus 42 rhE~~A~~mA~gyar~t------~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 42 CNELNAGYAADGYARVK------GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred CCHHHHHHHHHHHHHhh------CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 33344456677777653 2344444 666665 44577788777799999986543
No 374
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=29.24 E-value=1.5e+02 Score=27.83 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=34.1
Q ss_pred EEEEEechhH----HHHHHHHHHHHhCCC--cEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCC
Q 005820 589 VALLGYGTAV----QSCLAASALLESNGL--RLTVADARFCKPLDHALIRSLA-KSHEVLITVEEG 647 (676)
Q Consensus 589 v~Iva~Gs~v----~~aleAa~~L~~~Gi--~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~ 647 (676)
++|+++|+.. .....+++.|++... .+.++|..+. |++. +..+. .+.+.+|+||..
T Consensus 1 ~lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~--~~~~~~~~~d~viivDA~ 63 (146)
T TIGR00142 1 LVLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENF--TVAIRELRPTHILIVDAT 63 (146)
T ss_pred CEEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHH--HHHHHhcCCCEEEEEECc
Confidence 4678888876 345567777766432 4778888775 4333 22221 145778888863
No 375
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.98 E-value=1.4e+02 Score=25.13 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--c-cCCEEEEEcCCCCCCHHH
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--K-SHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~-~~~~vIvvEe~~~gG~gs 654 (676)
++|.+. ..-..|..|.+.|++.||..+.+|+.. |.+...++. . ..=.+|++++....||..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEEEecCCH
Confidence 455554 445889999999999999999999874 333332222 1 122345566655667643
No 376
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=28.88 E-value=2.5e+02 Score=24.54 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=35.7
Q ss_pred EEEEEechhHHHHHHHHHHHH----hCCCcEEEEEccc---cCcCcHHHHHHHhccCCEEEEEcC
Q 005820 589 VALLGYGTAVQSCLAASALLE----SNGLRLTVADARF---CKPLDHALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~----~~Gi~v~VId~~~---l~P~d~e~i~~~~~~~~~vIvvEe 646 (676)
+.|+++|+.+..+.-|++.|+ +.|+++.|---.. ..+++.+.+. ..+.||++=+
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~----~Ad~vi~~~~ 62 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIA----EADAVILAAD 62 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh----hCCEEEEecC
Confidence 578899998877777777665 4698887654333 5667766554 4455555443
No 377
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=28.73 E-value=2e+02 Score=26.90 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=35.1
Q ss_pred EEEEechhH----HHHHHHHHHHHhCC---CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 590 ALLGYGTAV----QSCLAASALLESNG---LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 590 ~Iva~Gs~v----~~aleAa~~L~~~G---i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
+|+++|+.. ..-..+++.|++.. -.++++|..+.- .+.+ ..++..+.+|+|+..
T Consensus 1 lViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~~---~~l~-~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 1 LVLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTLG---LELL-DAIEGADRVIVVDAV 61 (145)
T ss_pred CEEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCCH---HHHH-HHHhCCCEEEEEEcc
Confidence 367788765 34556777776642 358899988763 3333 334567888888864
No 378
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.68 E-value=89 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=23.5
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 591 LLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 591 Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
||.+ ...+.|+.|-+.|++.|++++++-++
T Consensus 5 ~i~F-~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 5 LITF-PSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred EEEE-CCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 3444 45678899999999999999998654
No 379
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=28.62 E-value=1.6e+02 Score=27.49 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=35.3
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC
Q 005820 591 LLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS 648 (676)
Q Consensus 591 Iva~Gs~v----~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~ 648 (676)
|+++|+.. .....+++.|++. +++++|..+. ..+.+ ..+...+.+|+||...
T Consensus 2 VlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~---~~~ll-~~i~~~d~viiVDA~~ 57 (140)
T cd06070 2 IIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD---GFGLL-SHLENYDIVIFIDVAV 57 (140)
T ss_pred EEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc---HHHHH-HHHcCCCEEEEEEeec
Confidence 67888866 4566777888764 5779998763 23333 3445778899898743
No 380
>PTZ00062 glutaredoxin; Provisional
Probab=28.20 E-value=1.7e+02 Score=29.45 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=48.8
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH---HHHHh-ccCCEEEEEcCCCCCCHHHHHH
Q 005820 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHAL---IRSLA-KSHEVLITVEEGSIGGFGSHVV 657 (676)
Q Consensus 586 G~dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~---i~~~~-~~~~~vIvvEe~~~gG~gs~v~ 657 (676)
.+.|+|++-|+ ....|..+.+.|++.|++.+.+|+.. |.+. +.+.- ..+=..|.|..-..||+....
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~- 186 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----DPDLREELKVYSNWPTYPQLYVNGELIGGHDIIK- 186 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----CHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHH-
Confidence 34577777763 46788999999999999999999762 3332 22221 112234567765689976333
Q ss_pred HHHHHcCCCCC
Q 005820 658 QFLAQDGLLDG 668 (676)
Q Consensus 658 ~~l~~~~~ld~ 668 (676)
.+.+.|-|+.
T Consensus 187 -~l~~~G~L~~ 196 (204)
T PTZ00062 187 -ELYESNSLRK 196 (204)
T ss_pred -HHHHcCChhh
Confidence 3666776644
No 381
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=27.71 E-value=2.4e+02 Score=28.03 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=51.8
Q ss_pred echhHHHHHHHHHHHHhCCCcEEEEEcccc--Cc--------C--------c-HHHHHHHhccCCEEEEEcCCCCCCHHH
Q 005820 594 YGTAVQSCLAASALLESNGLRLTVADARFC--KP--------L--------D-HALIRSLAKSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 594 ~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l--~P--------~--------d-~e~i~~~~~~~~~vIvvEe~~~gG~gs 654 (676)
+|.+...+.++++.+++.|+++++++++-. +| . | .+.+.+.+...+.||..=--+.|++++
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa 92 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSA 92 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchH
Confidence 578888888889999999999999998843 23 1 2 355666666778777655445799999
Q ss_pred HHHHHHHH
Q 005820 655 HVVQFLAQ 662 (676)
Q Consensus 655 ~v~~~l~~ 662 (676)
.+..++-.
T Consensus 93 ~~K~fiDR 100 (207)
T COG0655 93 QMKAFIDR 100 (207)
T ss_pred HHHHHHhh
Confidence 98888765
No 382
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=27.48 E-value=1.3e+02 Score=27.55 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEccccC
Q 005820 595 GTAVQSCLAASALLESNGLRLTVADARFCK 624 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~ 624 (676)
|+.-..|.+.++.|++.|++++++++....
T Consensus 8 G~te~~A~~ia~~l~~~g~~~~~~~~~~~~ 37 (143)
T PF00258_consen 8 GNTEKMAEAIAEGLRERGVEVRVVDLDDFD 37 (143)
T ss_dssp SHHHHHHHHHHHHHHHTTSEEEEEEGGGSC
T ss_pred hhHHHHHHHHHHHHHHcCCceeeechhhhh
Confidence 344455555666677789999999988654
No 383
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=27.06 E-value=66 Score=29.45 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=35.2
Q ss_pred EeecCCcEEEEEechhHH--HHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEE
Q 005820 582 ILIEGERVALLGYGTAVQ--SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLI 642 (676)
Q Consensus 582 vl~eG~dv~Iva~Gs~v~--~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vI 642 (676)
++..+.+++||++|.... .--+..+.|++.||.+.+.|-.. --++...++.+.++|.
T Consensus 54 ll~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~a----AcrTYN~L~~EgRrV~ 112 (117)
T cd05126 54 LLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEE----AVKRYNELAGKGRRVL 112 (117)
T ss_pred HHhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHH----HHHHHHHHHhCCCeEE
Confidence 344578999999999843 34455667888888877655221 1123344555656554
No 384
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=26.95 E-value=78 Score=30.76 Aligned_cols=59 Identities=22% Similarity=0.476 Sum_probs=35.0
Q ss_pred eecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcC-------cHHHHHHHhccCCEEEEE
Q 005820 583 LIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPL-------DHALIRSLAKSHEVLITV 644 (676)
Q Consensus 583 l~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~-------d~e~i~~~~~~~~~vIvv 644 (676)
.-.|+.++|++||..-.- .|+.|+..|..|.|.+...++-+ ....+.+.++..+.+|+.
T Consensus 20 ~l~Gk~vvV~GYG~vG~g---~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKG---IARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA 85 (162)
T ss_dssp --TTSEEEEE--SHHHHH---HHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred eeCCCEEEEeCCCcccHH---HHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence 345889999999987764 45667778999999997644432 222355667777777764
No 385
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.53 E-value=1.7e+02 Score=31.21 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=36.4
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcccc----------CcCcHHHHHHHhccCCEEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFC----------KPLDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l----------~P~d~e~i~~~~~~~~~vIv 643 (676)
.|+.+.||++|.+.. .++..|+..|.++.++|-+.- ++.+.+.+.+.+++.+.||.
T Consensus 151 ~g~kvlViG~G~iG~---~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGRTGM---TLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcHHHH---HHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEE
Confidence 367899999998554 355566677888998886631 22233445566667776654
No 386
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=26.36 E-value=1.9e+02 Score=25.21 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccCcCcHHHH---HHHhc-----cCCEEEEEcCCCCCCHHHHHHHHHHHcCCCCCcc
Q 005820 599 QSCLAASALLESNGLRLTVADARFCKPLDHALI---RSLAK-----SHEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTV 670 (676)
Q Consensus 599 ~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i---~~~~~-----~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld~~~ 670 (676)
..+..+...|...||..+.+|+.. |.+.. ++... .+-.-|.+.+-..||+ ..+. .+.+.|-|+.-+
T Consensus 17 ~~~~~v~~lL~~k~I~f~eiDI~~----d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~-ddl~-~l~e~g~L~~lL 90 (92)
T cd03030 17 KRQQEVLGFLEAKKIEFEEVDISM----NEENRQWMRENVPNENGKPLPPQIFNGDEYCGDY-EAFF-EAKENNTLEEFL 90 (92)
T ss_pred HHHHHHHHHHHHCCCceEEEecCC----CHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCH-HHHH-HHHhCCCHHHHh
Confidence 566677778899999999999984 44443 33332 2334567887778998 3333 355677666554
Q ss_pred c
Q 005820 671 K 671 (676)
Q Consensus 671 ~ 671 (676)
|
T Consensus 91 k 91 (92)
T cd03030 91 K 91 (92)
T ss_pred C
Confidence 4
No 387
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.09 E-value=2.3e+02 Score=27.84 Aligned_cols=120 Identities=20% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccc--------cCceeEeecCCcEEEEEechhHHHHHHHH
Q 005820 534 EAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLE--------VGKGRILIEGERVALLGYGTAVQSCLAAS 605 (676)
Q Consensus 534 ~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~--------~gk~~vl~eG~dv~Iva~Gs~v~~aleAa 605 (676)
-+|...++..|+- .++-+||.--.. +..+....-+...+++ .++...+.+-.+|.|++-.+.-..+.+.+
T Consensus 24 iedaARlLAQA~v-geG~IYi~G~~E-m~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a 101 (172)
T PF10740_consen 24 IEDAARLLAQAIV-GEGTIYIYGFGE-MEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALA 101 (172)
T ss_dssp HHHHHHHHHHHHH-TT--EEEEE-GG-GGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCEEEEEecCh-HHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHH
Confidence 3677888888875 678888864332 2211100000011111 11122344556899999999999999999
Q ss_pred HHHHhCCCcEEEEEccccCcCcHHHHHHH------hccCCEEEEEcCCCCCCHHHHHHH
Q 005820 606 ALLESNGLRLTVADARFCKPLDHALIRSL------AKSHEVLITVEEGSIGGFGSHVVQ 658 (676)
Q Consensus 606 ~~L~~~Gi~v~VId~~~l~P~d~e~i~~~------~~~~~~vIvvEe~~~gG~gs~v~~ 658 (676)
++|.++|+.+-+|.. .++ +.+.+.+. .+..+.+|--|++..-|+-+.++.
T Consensus 102 ~~L~~~gi~~v~Vs~--~~~-~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~ 157 (172)
T PF10740_consen 102 KQLIEQGIPFVGVSP--NKP-DEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAA 157 (172)
T ss_dssp HHHHHHT--EEEEE---SS----TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHH
T ss_pred HHHHHCCCCEEEEEe--cCC-CCCchhhhhhheeecccCCCcccCCCCCEecchHHHHH
Confidence 999999999998882 222 22222221 233466777788776666555543
No 388
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=26.00 E-value=5.5e+02 Score=28.68 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
++++++|.+++ ..++.+.+.=..++ ...|.+..|+....|++ +++-|+
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V-~~~~~R 115 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIV-LNLVNR 115 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEE-EEEecc
Confidence 37888999887 66788888777777 78899999999999954 444555
No 389
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.45 E-value=1e+02 Score=27.72 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=27.7
Q ss_pred cCCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEcc
Q 005820 585 EGERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 585 eG~dv~Iva~Gs~v-~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
...+++||++|... ..--+..+.|+++||.+++.|-.
T Consensus 51 ~~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 51 LQPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred cCCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 35689999999875 23344556788999999998844
No 390
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=25.33 E-value=2e+02 Score=31.25 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=38.0
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcH--------HHHHHHhccCCEEEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH--------ALIRSLAKSHEVLITV 644 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~--------e~i~~~~~~~~~vIvv 644 (676)
.|+.|.||++|++-.. .|..|++.|++|.+.+-+ -+..+. ..+.+++++.+.|++.
T Consensus 15 kgKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~ll 78 (335)
T PRK13403 15 QGKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQML 78 (335)
T ss_pred CcCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEEEe
Confidence 4678999999999864 456778889999888633 222111 1366777777766643
No 391
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=24.98 E-value=5.2e+02 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=22.8
Q ss_pred CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEE
Q 005820 325 GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHV 360 (676)
Q Consensus 325 G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v 360 (676)
|+..+.| .|..++...++.+-+ .++|++|.-
T Consensus 142 gl~V~~P---sd~~d~~~~l~~a~~--~~~Pv~ire 172 (327)
T CHL00144 142 GLQIVAC---STPYNAKGLLKSAIR--SNNPVIFFE 172 (327)
T ss_pred CCEEEEe---CCHHHHHHHHHHHHh--CCCcEEEEE
Confidence 7777777 567777777877765 478998863
No 392
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=24.72 E-value=1.3e+02 Score=29.03 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=33.2
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIv 643 (676)
+|++++||+-+..+..-+. ..|.++|..|++.+-.+ +.+.+.++..+.||+
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla--~lL~~~~atVt~~h~~T------~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLA--MLLLNKGATVTICHSKT------KNLQEITRRADIVVS 85 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHH--HHHHHTT-EEEEE-TTS------SSHHHHHTTSSEEEE
T ss_pred CCCEEEEECCcCCCChHHH--HHHHhCCCeEEeccCCC------CcccceeeeccEEee
Confidence 5778999999988877654 45777888888888776 334455666665554
No 393
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=24.10 E-value=4.2e+02 Score=27.36 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHHcCCC-CCcc
Q 005820 628 HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDGLL-DGTV 670 (676)
Q Consensus 628 ~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~l-d~~~ 670 (676)
.+.+..+++....+|+++... . -..+++.|.+.|+. +.++
T Consensus 154 ~~~l~~~~~~~~t~vi~~~~~--~-~~~i~~~L~~~g~~~~~~v 194 (257)
T PRK15473 154 REQLESFASHQTSMAIFLSVQ--R-IHRVAERLIAGGYPATTPV 194 (257)
T ss_pred hhhHHHHhcCCCeEEEECCch--h-HHHHHHHHHHcCCCCCCeE
Confidence 345667776666777777332 2 56778888888864 5444
No 394
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=2e+02 Score=24.14 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=40.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcH-HHHHHHh-ccCCEEEEEcCCCCCC
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDH-ALIRSLA-KSHEVLITVEEGSIGG 651 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~-e~i~~~~-~~~~~vIvvEe~~~gG 651 (676)
++|.+. +.-..|..|.+.|.+.|++-+.+++..-.+-.. +.+++.- ..+=..|++.+...||
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg 66 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGG 66 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeC
Confidence 455544 346789999999999999999999886554222 3344331 2333566677755555
No 395
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.85 E-value=1.8e+02 Score=30.91 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=21.5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
+|++++||+.|..+..- .+..|.++|..|++.+-++
T Consensus 157 ~Gk~vvVIGrs~~VG~p--la~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQP--VSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCEEEEECCCchhHHH--HHHHHHHCCCeEEEEeCCc
Confidence 35567777777666544 3334555666777766543
No 396
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=23.64 E-value=1.5e+02 Score=29.73 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=56.0
Q ss_pred EEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHH
Q 005820 528 VMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASAL 607 (676)
Q Consensus 528 V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~ 607 (676)
.+.||+|.-+..++++. ...+ + ..|. .+--+|++++||+-+..+..=+.. .
T Consensus 31 ~~~PCTp~avi~lL~~~-~i~~--------~------~~~~------------~~~l~GK~vvVIGrS~iVGkPla~--l 81 (197)
T cd01079 31 SILPCTPLAIVKILEFL-GIYN--------K------ILPY------------GNRLYGKTITIINRSEVVGRPLAA--L 81 (197)
T ss_pred CccCCCHHHHHHHHHHh-CCcc--------c------cccc------------CCCCCCCEEEEECCCccchHHHHH--H
Confidence 57899999999888654 1100 0 0111 011368899999999999766544 4
Q ss_pred HHhCCCcEEEEEccccCcCc---------------HHHHHHHhccCCEEEEE
Q 005820 608 LESNGLRLTVADARFCKPLD---------------HALIRSLAKSHEVLITV 644 (676)
Q Consensus 608 L~~~Gi~v~VId~~~l~P~d---------------~e~i~~~~~~~~~vIvv 644 (676)
|.++|..|++.|..+++-|. ...+.+.++..+.||+.
T Consensus 82 L~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsA 133 (197)
T cd01079 82 LANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITG 133 (197)
T ss_pred HHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEc
Confidence 66788889988754433322 12366777888876653
No 397
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=23.64 E-value=1.8e+02 Score=27.53 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=20.5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
+|++++|++-+..+..- .+.+|.++|..+++.+-++
T Consensus 27 ~gk~v~VvGrs~~vG~p--la~lL~~~gatV~~~~~~t 62 (140)
T cd05212 27 DGKKVLVVGRSGIVGAP--LQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCEEEEeCCCC
Confidence 45566666665555543 3344556666666666443
No 398
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=23.51 E-value=3e+02 Score=32.21 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN 247 (676)
++++|+|.++| ..++++.+.=..++ ...|.+..|+-...|+++++-+-
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R 296 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQR 296 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEccc
Confidence 37788888887 66788888777777 88999999999889976665544
No 399
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=23.20 E-value=1.5e+02 Score=26.78 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCE-----EEEEcCC-C-CC-----CHH-HHHHHHHHH
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEV-----LITVEEG-S-IG-----GFG-SHVVQFLAQ 662 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~-----vIvvEe~-~-~g-----G~g-s~v~~~l~~ 662 (676)
.....|.+|.+.|++.|++++.+|+.. .|+..+.+.++++..+. +|--.+. + .. .+. ..+.+.|.+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~ 85 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPNLSDQELLDAMVA 85 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHH
Confidence 345788999999999999999999884 78899988887765431 2211111 1 01 222 446667777
Q ss_pred cCC-CCCcccc
Q 005820 663 DGL-LDGTVKV 672 (676)
Q Consensus 663 ~~~-ld~~~~~ 672 (676)
+.. +..|+.+
T Consensus 86 ~P~LikRPIi~ 96 (114)
T TIGR00014 86 HPILLERPIVV 96 (114)
T ss_pred CcCcccCCeEE
Confidence 754 5776654
No 400
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=23.16 E-value=2.3e+02 Score=31.90 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=37.5
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcC
Q 005820 588 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEE 646 (676)
Q Consensus 588 dv~Iva~Gs-~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe 646 (676)
++.|+..+. ....|++.++.|++.|+.+++ +... +.+ .+.++... .+.+.++++.+
T Consensus 327 ~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 327 DVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEec
Confidence 677777666 457899999999999999887 5442 344 33444333 34467777764
No 401
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.98 E-value=3.1e+02 Score=22.35 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=42.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhC-CCcEEEEEccccCcCcHHHH--HHHhccCCEEEEEcCCCCCCHHHHHHHHHHHcC
Q 005820 589 VALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHALI--RSLAKSHEVLITVEEGSIGGFGSHVVQFLAQDG 664 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~-Gi~v~VId~~~l~P~d~e~i--~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~~~ 664 (676)
+.++++|.....+......|.+. |+++.++... ..... .....+...+|++-..-...---.+++.+.++|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g 74 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIAT-----ELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELG 74 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCc-----HHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcC
Confidence 46899999999999999988877 8877665422 12222 233455677777764322121222344555554
No 402
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=22.62 E-value=3e+02 Score=21.06 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhcc-CCEEEEEcCCCCCCHHH
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS-HEVLITVEEGSIGGFGS 654 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~-~~~vIvvEe~~~gG~gs 654 (676)
|+|.+.. ....|..|...|++.+++...+|+..-.. -.+.+.+.... +-.++++.+...||+..
T Consensus 2 v~ly~~~-~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~~~~igg~~~ 66 (72)
T cd02066 2 VVVFSKS-TCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFINGEFIGGYDD 66 (72)
T ss_pred EEEEECC-CCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCEEEecHHH
Confidence 3444433 34788999999999999999999874322 12233333322 22255565555788753
No 403
>PRK09004 FMN-binding protein MioC; Provisional
Probab=22.38 E-value=2e+02 Score=27.10 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.3
Q ss_pred EEEechhHHHHHHHHHHHH----hCCCcEEEEEcc
Q 005820 591 LLGYGTAVQSCLAASALLE----SNGLRLTVADAR 621 (676)
Q Consensus 591 Iva~Gs~v~~aleAa~~L~----~~Gi~v~VId~~ 621 (676)
.|-|||....+.+.|++|. +.|+++.++++.
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~ 39 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGP 39 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccC
Confidence 4558998888888776654 468999988764
No 404
>PRK08105 flavodoxin; Provisional
Probab=22.37 E-value=92 Score=29.54 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=26.4
Q ss_pred EEEEechhHHHHHHHHHHH----HhCCCcEEEEEccccCc
Q 005820 590 ALLGYGTAVQSCLAASALL----ESNGLRLTVADARFCKP 625 (676)
Q Consensus 590 ~Iva~Gs~v~~aleAa~~L----~~~Gi~v~VId~~~l~P 625 (676)
+.|-|||....+.+.|+.| ++.|+++.|+++..+.+
T Consensus 4 i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~ 43 (149)
T PRK08105 4 VGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSD 43 (149)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCc
Confidence 3466889888888777665 44699999999765543
No 405
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.21 E-value=2.1e+02 Score=28.73 Aligned_cols=96 Identities=21% Similarity=0.358 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCccccccccchhhhhHHHHHHHHHHHH
Q 005820 333 DGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFAEALIAE 412 (676)
Q Consensus 333 dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~~~~~~~~~~~~~~a~~~aL~~~ 412 (676)
.|.|+++|.++.+.-+ -...+..+.+.|-.-+. .|. .+-||++.+-.... .-.-+++|.++|.+.
T Consensus 10 ~GSNlqaiida~~~~~----~~a~i~~Visd~~~A~~-ler--A~~~gIpt~~~~~k--------~~~~r~~~d~~l~~~ 74 (200)
T COG0299 10 NGSNLQAIIDAIKGGK----LDAEIVAVISDKADAYA-LER--AAKAGIPTVVLDRK--------EFPSREAFDRALVEA 74 (200)
T ss_pred CcccHHHHHHHHhcCC----CCcEEEEEEeCCCCCHH-HHH--HHHcCCCEEEeccc--------cCCCHHHHHHHHHHH
Confidence 6789999988876221 11223333433322111 121 12355553211111 111245666667766
Q ss_pred HHc-CCCEEEEeccccCccch-hhhhhhCCCceeec
Q 005820 413 AEV-DKDVVAIHAAMGGGTGL-NLFLRRFPTRCFDV 446 (676)
Q Consensus 413 ~~~-d~~iv~i~aD~~gs~~l-~~f~~~~p~R~id~ 446 (676)
+++ .++++++..-|-= | ..|-++|++|.+|.
T Consensus 75 l~~~~~dlvvLAGyMrI---L~~~fl~~~~grIlNI 107 (200)
T COG0299 75 LDEYGPDLVVLAGYMRI---LGPEFLSRFEGRILNI 107 (200)
T ss_pred HHhcCCCEEEEcchHHH---cCHHHHHHhhcceEec
Confidence 654 6888886543320 1 36888999999987
No 406
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=22.17 E-value=1.5e+02 Score=32.74 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 586 GERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 586 G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+++++||+.|. .++|+|..|++.|.+|+||...
T Consensus 144 ~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 144 ERSVVIVGAGT---IGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred CCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecC
Confidence 56788888774 4567777777788888888753
No 407
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=22.14 E-value=1.9e+02 Score=32.07 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=56.6
Q ss_pred EEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcC-CC-CCCH--HHHHHHHHHHcCC
Q 005820 591 LLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE-GS-IGGF--GSHVVQFLAQDGL 665 (676)
Q Consensus 591 Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe-~~-~gG~--gs~v~~~l~~~~~ 665 (676)
||.+-..=+-+++.++.|+.+|++|+.+.+..=--+|.+.+++.++....+|.|=- |+ +|-+ =.+|++.+.+++.
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i 172 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGI 172 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCC
Confidence 45555666788899999988899999999887666889999999877666776654 33 3433 3677888888875
No 408
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=22.10 E-value=3.5e+02 Score=27.58 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccCcCcH--------HHHHHHhccCCEEEEEcCCCCCCHHHHHHHH
Q 005820 599 QSCLAASALLESNGLRLTVADARFCKPLDH--------ALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 659 (676)
Q Consensus 599 ~~aleAa~~L~~~Gi~v~VId~~~l~P~d~--------e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~ 659 (676)
..+..+++.+.++|..++++|++-+-.++. ..+++.++..+.+|++=--+.+|+...+..+
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~sipg~LKNa 112 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHGAITGSQKDQ 112 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccccCcCHHHHHH
Confidence 455556667776799999999875522221 2345556666666655433455555554433
No 409
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.93 E-value=3.8e+02 Score=23.80 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=27.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCC-CcEEEEE
Q 005820 588 RVALLGYGTAVQSCLAASALLESNG-LRLTVAD 619 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~G-i~v~VId 619 (676)
+|.|++.|.....+..++..|.+.| +.+.+++
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~ 33 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEA 33 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 3779999999999999999998875 8888776
No 410
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=21.84 E-value=1.6e+02 Score=26.35 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCC----EEEEEcCC-C------CCCHH-HHHHHHHHHc
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE----VLITVEEG-S------IGGFG-SHVVQFLAQD 663 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~----~vIvvEe~-~------~gG~g-s~v~~~l~~~ 663 (676)
+....|.+|.+.|++.|+.++++|+.- .|++.+.+.++++..+ .+|--... + .-.+. .++.+.|.++
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~ 85 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAH 85 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhC
Confidence 344778899999999999999999774 7888888877765443 12211110 0 01232 4466667777
Q ss_pred CC-CCCcccc
Q 005820 664 GL-LDGTVKV 672 (676)
Q Consensus 664 ~~-ld~~~~~ 672 (676)
.. +..|+.+
T Consensus 86 P~LikRPIi~ 95 (112)
T cd03034 86 PILIERPIVV 95 (112)
T ss_pred cCcccCCEEE
Confidence 54 5666654
No 411
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=21.78 E-value=1.6e+02 Score=26.54 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~ 638 (676)
.....|..|.+.|++.|++.+++|+.. .|++.+.+.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 455789999999999999999999863 677888887776543
No 412
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=21.62 E-value=1.9e+02 Score=25.30 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCC----EEEE------EcCCC--CCCHH-HHHHHHHHH
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHE----VLIT------VEEGS--IGGFG-SHVVQFLAQ 662 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~----~vIv------vEe~~--~gG~g-s~v~~~l~~ 662 (676)
.....|.+|.+.|++.|++.+.+|+.. .|.+.+.+.++.+... .++- .+-+. ...+. .++.+.|.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~ 85 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDEEALELMAE 85 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCHHHHHHHHHh
Confidence 345789999999999999999999873 6778888877654432 1111 11111 12333 556677777
Q ss_pred cCC-CCCcccc
Q 005820 663 DGL-LDGTVKV 672 (676)
Q Consensus 663 ~~~-ld~~~~~ 672 (676)
+.- +..|+.+
T Consensus 86 ~p~LikRPii~ 96 (105)
T cd02977 86 HPKLIKRPIVV 96 (105)
T ss_pred CcCeeeCCEEE
Confidence 753 5666654
No 413
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.01 E-value=2.6e+02 Score=22.89 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=31.0
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc--cCcCcHHH---HHHHhccCC
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARF--CKPLDHAL---IRSLAKSHE 639 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~--l~P~d~e~---i~~~~~~~~ 639 (676)
++||+.|.. ++|.|..|.+.|.++++|...- +.-+|.+. +.+.+++.+
T Consensus 2 vvViGgG~i---g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 2 VVVIGGGFI---GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEESSSHH---HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECcCHH---HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCC
Confidence 677777754 5567777888899999998652 22356654 334444443
No 414
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.86 E-value=2.2e+02 Score=27.16 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhcc-----CCEEEEEcCCCCCCHHHHHHHHHHHcCCCCCccc
Q 005820 597 AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS-----HEVLITVEEGSIGGFGSHVVQFLAQDGLLDGTVK 671 (676)
Q Consensus 597 ~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~-----~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld~~~~ 671 (676)
....|..|.+.|++.+|+...+|+..=..+ .+.+++.... +=..|.|.....||... + ..+.+.|.|..-++
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~-~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~de-l-~~L~e~G~L~~lL~ 91 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGF-REELRELLGAELKAVSLPRVFVDGRYLGGAEE-V-LRLNESGELRKLLK 91 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHH-HHHHHHHhCCCCCCCCCCEEEECCEEEecHHH-H-HHHHHcCCHHHHHh
Confidence 568889999999999999999998731111 2334444332 33456688767888543 3 34667776544433
No 415
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=20.83 E-value=3.1e+02 Score=30.71 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=31.4
Q ss_pred hHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEE
Q 005820 193 ISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILN 245 (676)
Q Consensus 193 ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~ 245 (676)
.-+|.|+|.+ .|+-..+++-.|=|.++ ..-++..|-.-+.||++|.=
T Consensus 51 ~~mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g 97 (432)
T TIGR00173 51 GFFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTA 97 (432)
T ss_pred HHHHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeC
Confidence 3467777654 34455555666888877 44567777777799999973
No 416
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.73 E-value=1.9e+02 Score=28.74 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=24.2
Q ss_pred CeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEE
Q 005820 210 NNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILN 245 (676)
Q Consensus 210 ~~vv~viGDG-a~~eG~~~EAln~A~~~~~~li~Iv~ 245 (676)
.++++|+|++ +..+|..+++...+...+-.+-+|-.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4677777776 88888877777766665555555443
No 417
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=2.1e+02 Score=26.54 Aligned_cols=40 Identities=33% Similarity=0.535 Sum_probs=21.5
Q ss_pred hhhcCcee--eccCCCCCH-HHHHHHHHHhhhcCCCCcEEEEEEe
Q 005820 321 FEELGLYY--IGPVDGHNV-DDLVAILEEVKNTKTTGPVLIHVVT 362 (676)
Q Consensus 321 fea~G~~~--~~~vdGhd~-~~l~~al~~a~~~~~~~P~lI~v~T 362 (676)
++..|+.| + ||-|..+ ++=+++++++... .++|++.+|+|
T Consensus 54 a~~aGl~y~~i-PV~~~~iT~~dV~~f~~Al~e-aegPVlayCrs 96 (130)
T COG3453 54 AEAAGLTYTHI-PVTGGGITEADVEAFQRALDE-AEGPVLAYCRS 96 (130)
T ss_pred HHhcCCceEEe-ecCCCCCCHHHHHHHHHHHHH-hCCCEEeeecC
Confidence 45555543 4 6655332 2222334433332 47999999985
No 418
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=20.34 E-value=1.1e+02 Score=29.72 Aligned_cols=34 Identities=26% Similarity=0.520 Sum_probs=23.1
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+++.|+||+||+.-+ .-+..|++.|++|.|-.-.
T Consensus 3 ~~k~IAViGyGsQG~---a~AlNLrDSG~~V~Vglr~ 36 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGH---AHALNLRDSGVNVIVGLRE 36 (165)
T ss_dssp CTSEEEEES-SHHHH---HHHHHHHHCC-EEEEEE-T
T ss_pred CCCEEEEECCChHHH---HHHHHHHhCCCCEEEEecC
Confidence 477899999999843 3456689999988775533
Done!