Query 005820
Match_columns 676
No_of_seqs 374 out of 2814
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 2E-109 6E-114 959.0 48.2 579 71-671 7-586 (629)
2 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1E-108 4E-113 951.5 45.2 579 70-671 4-583 (621)
3 3mos_A Transketolase, TK; thia 100.0 1.9E-97 6E-102 853.9 45.9 521 83-671 2-583 (616)
4 3l84_A Transketolase; TKT, str 100.0 1.9E-95 6E-100 835.7 40.3 501 89-656 1-596 (632)
5 3rim_A Transketolase, TK; TPP, 100.0 1.8E-94 6.2E-99 833.2 39.6 502 91-654 19-656 (700)
6 3m49_A Transketolase; alpha-be 100.0 1.3E-94 4.4E-99 835.1 37.1 512 86-655 21-649 (690)
7 1itz_A Transketolase; calvin c 100.0 8.4E-93 2.9E-97 823.6 43.6 512 83-656 5-636 (675)
8 3kom_A Transketolase; rossmann 100.0 2.8E-93 9.4E-98 822.5 35.7 506 91-656 3-622 (663)
9 3uk1_A Transketolase; structur 100.0 1.1E-92 3.8E-97 820.4 35.1 501 94-656 45-670 (711)
10 1gpu_A Transketolase; transfer 100.0 5.2E-91 1.8E-95 809.1 39.6 499 93-656 6-627 (680)
11 2e6k_A Transketolase; structur 100.0 5.7E-91 1.9E-95 805.8 37.1 498 96-656 10-614 (651)
12 2r8o_A Transketolase 1, TK 1; 100.0 1.9E-90 6.6E-95 803.7 37.6 503 94-656 4-623 (669)
13 1r9j_A Transketolase; domains, 100.0 4.2E-89 1.4E-93 791.7 38.8 500 93-656 5-618 (673)
14 2qtc_A Pyruvate dehydrogenase 100.0 3E-87 1E-91 788.9 41.7 589 37-660 33-815 (886)
15 3ahc_A Phosphoketolase, xylulo 100.0 3.5E-65 1.2E-69 590.7 34.5 510 93-663 47-743 (845)
16 2jgd_A 2-oxoglutarate dehydrog 100.0 4E-61 1.4E-65 568.6 35.4 523 88-672 194-901 (933)
17 2yic_A 2-oxoglutarate decarbox 100.0 8.9E-57 3.1E-61 528.9 32.0 524 87-672 113-838 (868)
18 2xt6_A 2-oxoglutarate decarbox 100.0 1.6E-55 5.3E-60 530.0 34.5 524 87-672 358-1083(1113)
19 1ik6_A Pyruvate dehydrogenase; 100.0 1.2E-55 4.3E-60 477.9 21.3 302 361-671 10-334 (369)
20 2bfd_B 2-oxoisovalerate dehydr 100.0 9.9E-51 3.4E-55 436.0 21.2 283 384-671 6-308 (342)
21 1w85_B Pyruvate dehydrogenase 100.0 5.1E-50 1.8E-54 427.8 26.1 268 399-671 3-289 (324)
22 2ozl_B PDHE1-B, pyruvate dehyd 100.0 5.9E-50 2E-54 429.5 26.1 270 398-672 14-306 (341)
23 1umd_B E1-beta, 2-OXO acid deh 100.0 1.5E-49 5E-54 424.3 25.0 269 398-671 3-290 (324)
24 1qs0_B 2-oxoisovalerate dehydr 100.0 2.8E-48 9.5E-53 416.8 24.0 266 398-671 4-304 (338)
25 1umd_A E1-alpha, 2-OXO acid de 100.0 1.1E-29 3.6E-34 275.0 23.6 237 86-380 30-284 (367)
26 2ozl_A PDHE1-A type I, pyruvat 99.9 4.4E-25 1.5E-29 237.9 21.6 229 82-371 24-270 (365)
27 1w85_A Pyruvate dehydrogenase 99.9 9.5E-25 3.3E-29 235.8 22.8 224 86-371 38-275 (368)
28 2bfd_A 2-oxoisovalerate dehydr 99.9 6.4E-24 2.2E-28 231.7 21.6 227 87-371 50-294 (400)
29 1qs0_A 2-oxoisovalerate dehydr 99.9 3.7E-23 1.3E-27 225.7 23.6 228 87-372 69-315 (407)
30 1yd7_A 2-keto acid:ferredoxin 99.9 6.7E-24 2.3E-28 231.7 12.3 255 400-662 24-366 (395)
31 2c42_A Pyruvate-ferredoxin oxi 99.7 1.5E-16 5.3E-21 194.2 25.4 217 442-662 55-349 (1231)
32 4feg_A Pyruvate oxidase; carba 99.6 8.7E-16 3E-20 176.6 10.9 214 118-406 369-587 (603)
33 3ju3_A Probable 2-oxoacid ferr 99.5 6.1E-14 2.1E-18 127.3 9.0 77 585-661 12-88 (118)
34 2uz1_A Benzaldehyde lyase; thi 99.5 1E-13 3.5E-18 158.1 10.5 179 119-366 369-548 (563)
35 1ozh_A ALS, acetolactate synth 99.4 1.6E-12 5.6E-17 148.3 15.7 175 120-367 371-546 (566)
36 1t9b_A Acetolactate synthase, 99.4 5.1E-13 1.7E-17 155.3 7.8 134 185-371 511-644 (677)
37 1ybh_A Acetolactate synthase, 99.3 6.7E-13 2.3E-17 152.2 8.0 141 185-370 424-564 (590)
38 2iht_A Carboxyethylarginine sy 99.3 1.2E-12 4.1E-17 149.6 8.8 126 185-364 434-561 (573)
39 1q6z_A BFD, BFDC, benzoylforma 99.3 1.1E-12 3.7E-17 148.5 7.2 126 187-365 401-526 (528)
40 2pgn_A Cyclohexane-1,2-dione h 99.3 2.3E-12 7.8E-17 147.7 7.9 133 185-371 422-554 (589)
41 3eya_A Pyruvate dehydrogenase 99.3 2.7E-12 9.1E-17 146.0 8.2 130 185-368 404-533 (549)
42 2vk8_A Pyruvate decarboxylase 99.3 1.8E-12 6.3E-17 147.7 6.1 130 185-366 411-544 (563)
43 2pan_A Glyoxylate carboligase; 99.3 5.1E-12 1.8E-16 145.6 9.5 138 185-368 440-584 (616)
44 1ovm_A Indole-3-pyruvate decar 99.3 3.1E-12 1.1E-16 145.4 7.3 125 185-366 406-534 (552)
45 1v5e_A Pyruvate oxidase; oxido 99.3 7.1E-12 2.4E-16 143.7 9.5 130 185-366 411-541 (590)
46 2vbi_A Pyruvate decarboxylase; 99.2 5.3E-12 1.8E-16 144.0 7.9 126 185-368 407-537 (566)
47 2vbf_A Branched-chain alpha-ke 99.2 7.6E-12 2.6E-16 142.8 7.3 126 185-367 423-554 (570)
48 2wvg_A PDC, pyruvate decarboxy 99.2 1.2E-11 4.1E-16 141.1 7.9 126 185-368 411-545 (568)
49 2nxw_A Phenyl-3-pyruvate decar 99.2 1.2E-11 4E-16 141.1 7.4 124 185-366 420-544 (565)
50 2c31_A Oxalyl-COA decarboxylas 99.2 2.7E-11 9.3E-16 138.2 9.7 126 185-367 424-550 (568)
51 3hww_A 2-succinyl-5-enolpyruvy 99.2 2.6E-11 8.7E-16 138.1 9.0 126 186-366 416-541 (556)
52 2q28_A Oxalyl-COA decarboxylas 99.2 4.5E-11 1.6E-15 136.2 11.0 127 185-367 419-547 (564)
53 2x7j_A 2-succinyl-5-enolpyruvy 99.2 2.1E-11 7E-16 140.2 6.8 130 185-366 453-582 (604)
54 3lq1_A 2-succinyl-5-enolpyruvy 99.1 8.2E-11 2.8E-15 134.5 7.6 129 190-371 439-567 (578)
55 2c42_A Pyruvate-ferredoxin oxi 98.2 1.9E-06 6.3E-11 105.8 7.8 116 209-364 953-1070(1231)
56 1v5e_A Pyruvate oxidase; oxido 94.1 0.26 8.9E-06 55.9 12.0 113 442-560 45-165 (590)
57 2wvg_A PDC, pyruvate decarboxy 93.1 1.3 4.5E-05 49.8 15.7 117 441-560 42-170 (568)
58 1ozh_A ALS, acetolactate synth 92.8 0.76 2.6E-05 51.8 13.2 121 433-559 42-170 (566)
59 2vbi_A Pyruvate decarboxylase; 92.8 1.2 3.9E-05 50.2 14.6 115 441-560 42-170 (566)
60 2uz1_A Benzaldehyde lyase; thi 92.7 0.78 2.7E-05 51.6 13.1 121 433-559 35-164 (563)
61 2pan_A Glyoxylate carboligase; 92.5 1.2 4.1E-05 50.6 14.5 121 433-559 58-188 (616)
62 2nxw_A Phenyl-3-pyruvate decar 91.9 1 3.6E-05 50.6 12.8 151 399-559 21-186 (565)
63 1ybh_A Acetolactate synthase, 91.8 0.84 2.9E-05 51.7 11.8 113 442-559 52-172 (590)
64 3eya_A Pyruvate dehydrogenase 91.4 1.6 5.4E-05 48.9 13.5 122 433-559 34-162 (549)
65 2iht_A Carboxyethylarginine sy 91.2 0.71 2.4E-05 52.1 10.4 116 440-559 48-171 (573)
66 1t9b_A Acetolactate synthase, 90.8 1.6 5.5E-05 50.3 13.0 112 442-558 122-241 (677)
67 2vbf_A Branched-chain alpha-ke 90.6 2 6.7E-05 48.3 13.4 113 442-559 65-190 (570)
68 2pgn_A Cyclohexane-1,2-dione h 90.6 1.2 4E-05 50.5 11.5 113 442-559 45-165 (589)
69 1q6z_A BFD, BFDC, benzoylforma 90.5 2.3 7.9E-05 47.3 13.7 115 442-560 40-162 (528)
70 4feg_A Pyruvate oxidase; carba 90.0 2 6.7E-05 48.8 12.8 121 433-559 42-171 (603)
71 3hww_A 2-succinyl-5-enolpyruvy 89.4 6.2 0.00021 44.1 16.1 147 405-559 10-171 (556)
72 2x7j_A 2-succinyl-5-enolpyruvy 89.1 3.6 0.00012 46.6 14.1 149 400-559 32-198 (604)
73 2c31_A Oxalyl-COA decarboxylas 88.3 3.2 0.00011 46.6 12.7 116 440-559 47-171 (568)
74 3lq1_A 2-succinyl-5-enolpyruvy 87.4 4.9 0.00017 45.2 13.7 148 405-559 13-178 (578)
75 2vk8_A Pyruvate decarboxylase 87.2 9 0.00031 42.8 15.7 114 442-560 44-171 (563)
76 1ovm_A Indole-3-pyruvate decar 86.1 6 0.0002 44.1 13.4 123 433-559 36-170 (552)
77 2q28_A Oxalyl-COA decarboxylas 83.9 9 0.00031 42.8 13.5 115 441-559 46-169 (564)
78 1w85_A Pyruvate dehydrogenase 82.3 3.4 0.00012 44.0 8.7 102 452-556 146-263 (368)
79 2bfd_A 2-oxoisovalerate dehydr 80.3 3.9 0.00013 44.0 8.4 102 454-556 168-283 (400)
80 3m49_A Transketolase; alpha-be 74.7 11 0.00037 43.5 10.4 111 443-557 136-270 (690)
81 1qs0_A 2-oxoisovalerate dehydr 73.4 6.7 0.00023 42.2 7.8 101 454-556 187-303 (407)
82 2r8o_A Transketolase 1, TK 1; 72.7 12 0.00041 42.9 10.2 89 466-557 147-244 (669)
83 1r9j_A Transketolase; domains, 72.0 15 0.0005 42.3 10.6 89 466-557 149-247 (673)
84 1gpu_A Transketolase; transfer 71.6 11 0.00036 43.5 9.4 89 466-557 149-247 (680)
85 1wik_A Thioredoxin-like protei 70.4 6.2 0.00021 33.7 5.5 77 586-665 14-95 (109)
86 1umd_A E1-alpha, 2-OXO acid de 69.1 15 0.00051 38.8 9.2 108 445-556 142-265 (367)
87 2wci_A Glutaredoxin-4; redox-a 67.8 3.9 0.00013 37.0 3.7 66 588-654 36-106 (135)
88 3ipz_A Monothiol glutaredoxin- 65.5 12 0.00041 32.0 6.3 69 586-655 17-90 (109)
89 2o1s_A 1-deoxy-D-xylulose-5-ph 64.7 33 0.0011 38.8 11.5 103 192-361 373-477 (621)
90 1qs0_B 2-oxoisovalerate dehydr 64.6 26 0.00088 36.4 9.9 39 321-364 138-177 (338)
91 3zyw_A Glutaredoxin-3; metal b 63.8 10 0.00034 32.8 5.5 78 586-666 15-97 (111)
92 2ozl_A PDHE1-A type I, pyruvat 63.8 9.1 0.00031 40.6 6.2 101 453-556 145-259 (365)
93 2lqo_A Putative glutaredoxin R 62.8 9.7 0.00033 31.9 5.0 75 588-667 5-86 (92)
94 2ozl_B PDHE1-B, pyruvate dehyd 62.3 30 0.001 36.1 9.9 48 192-248 74-131 (341)
95 2e6k_A Transketolase; structur 62.1 25 0.00086 40.1 10.0 88 466-557 151-247 (651)
96 3kom_A Transketolase; rossmann 60.2 43 0.0015 38.3 11.4 102 453-557 121-246 (663)
97 3uk1_A Transketolase; structur 60.0 22 0.00075 41.1 8.9 101 453-557 160-284 (711)
98 1ik6_A Pyruvate dehydrogenase; 58.3 42 0.0014 35.4 10.2 49 192-248 110-168 (369)
99 1itz_A Transketolase; calvin c 57.5 33 0.0011 39.3 9.9 89 466-557 160-258 (675)
100 1w85_B Pyruvate dehydrogenase 55.4 53 0.0018 33.8 10.3 46 191-245 61-117 (324)
101 2o1x_A 1-deoxy-D-xylulose-5-ph 55.4 33 0.0011 38.9 9.4 100 454-557 129-286 (629)
102 2wem_A Glutaredoxin-related pr 55.0 27 0.00091 30.5 6.7 65 586-654 19-92 (118)
103 2bfd_B 2-oxoisovalerate dehydr 53.4 35 0.0012 35.5 8.5 38 321-363 154-192 (342)
104 3rim_A Transketolase, TK; TPP, 53.3 34 0.0012 39.4 9.0 89 466-557 169-266 (700)
105 3l84_A Transketolase; TKT, str 52.6 34 0.0012 38.9 8.8 100 453-557 119-239 (632)
106 3mos_A Transketolase, TK; thia 46.8 96 0.0033 35.0 11.4 50 192-248 367-416 (616)
107 3rpe_A MDAB, modulator of drug 45.8 58 0.002 31.7 8.2 59 599-659 47-105 (218)
108 1umd_B E1-beta, 2-OXO acid deh 45.2 88 0.003 32.0 10.0 46 192-245 63-118 (324)
109 1aba_A Glutaredoxin; electron 44.7 40 0.0014 27.0 5.9 59 597-655 13-82 (87)
110 2vzf_A NADH-dependent FMN redu 43.0 38 0.0013 31.9 6.3 65 597-661 18-93 (197)
111 3kkj_A Amine oxidase, flavin-c 42.3 18 0.00061 33.9 3.8 32 587-621 3-34 (336)
112 2ct6_A SH3 domain-binding glut 40.8 24 0.00083 30.2 4.1 76 588-670 9-102 (111)
113 1t1v_A SH3BGRL3, SH3 domain-bi 40.5 15 0.00051 30.2 2.6 79 588-670 3-90 (93)
114 2yan_A Glutaredoxin-3; oxidore 40.4 24 0.00081 29.6 3.9 75 588-666 18-98 (105)
115 3qmx_A Glutaredoxin A, glutare 39.9 44 0.0015 27.8 5.5 66 587-654 16-83 (99)
116 2q62_A ARSH; alpha/beta, flavo 38.7 43 0.0015 33.2 6.1 64 599-662 52-123 (247)
117 3gx8_A Monothiol glutaredoxin- 38.4 42 0.0014 29.3 5.3 65 586-654 15-90 (121)
118 3l4e_A Uncharacterized peptida 38.0 63 0.0022 31.0 7.0 72 586-665 27-102 (206)
119 1u6t_A SH3 domain-binding glut 37.8 26 0.00089 31.0 3.8 66 600-668 18-92 (121)
120 1sqs_A Conserved hypothetical 37.6 51 0.0018 32.0 6.5 67 596-662 16-104 (242)
121 1v95_A Nuclear receptor coacti 36.4 98 0.0034 27.7 7.4 59 588-646 10-69 (130)
122 2jgd_A 2-oxoglutarate dehydrog 34.4 1.1E+02 0.0038 36.3 9.6 109 444-556 318-452 (933)
123 2ab1_A Hypothetical protein; H 33.0 15 0.00053 32.5 1.5 39 583-621 58-98 (122)
124 3lyu_A Putative hydrogenase; t 32.6 58 0.002 29.1 5.4 51 585-635 17-68 (142)
125 2amj_A Modulator of drug activ 32.4 73 0.0025 30.2 6.4 60 600-661 35-94 (204)
126 2e85_A Hydrogenase 3 maturatio 29.8 1.5E+02 0.005 27.1 7.8 58 588-647 5-67 (159)
127 2fzv_A Putative arsenical resi 29.7 59 0.002 32.9 5.4 64 598-661 75-147 (279)
128 3hly_A Flavodoxin-like domain; 29.6 95 0.0033 28.1 6.5 32 591-622 4-39 (161)
129 2a5l_A Trp repressor binding p 29.3 68 0.0023 29.7 5.6 67 595-662 17-96 (200)
130 1t0i_A YLR011WP; FMN binding p 28.2 86 0.0029 28.9 6.0 68 595-662 14-109 (191)
131 2fvt_A Conserved hypothetical 28.1 23 0.0008 31.9 1.9 36 586-621 67-103 (135)
132 5nul_A Flavodoxin; electron tr 27.9 85 0.0029 27.2 5.6 29 595-623 10-38 (138)
133 3f2v_A General stress protein 27.8 88 0.003 29.6 6.0 62 601-662 19-83 (192)
134 1id1_A Putative potassium chan 27.8 1.7E+02 0.0058 25.7 7.8 32 587-621 4-35 (153)
135 3llv_A Exopolyphosphatase-rela 27.6 1.3E+02 0.0044 26.0 6.8 32 586-620 6-37 (141)
136 2fi9_A Outer membrane protein; 27.4 23 0.00079 31.6 1.7 36 586-621 68-104 (128)
137 3u7r_A NADPH-dependent FMN red 27.4 1E+02 0.0034 29.2 6.3 64 598-661 18-94 (190)
138 4dik_A Flavoprotein; TM0755, e 27.1 1.5E+02 0.0053 31.4 8.5 54 590-643 268-325 (410)
139 2khp_A Glutaredoxin; thioredox 26.7 1.1E+02 0.0038 24.2 5.7 64 588-654 7-72 (92)
140 3ibs_A Conserved hypothetical 26.5 77 0.0026 29.7 5.5 57 191-247 92-149 (218)
141 3rhb_A ATGRXC5, glutaredoxin-C 25.9 1.4E+02 0.0046 24.9 6.4 67 587-655 19-90 (113)
142 3fwz_A Inner membrane protein 25.5 1.4E+02 0.005 25.9 6.8 32 587-621 8-39 (140)
143 3hr4_A Nitric oxide synthase, 25.3 73 0.0025 31.0 5.0 38 587-624 40-80 (219)
144 3fni_A Putative diflavin flavo 25.2 97 0.0033 28.1 5.6 34 590-623 7-44 (159)
145 4a5l_A Thioredoxin reductase; 24.9 1.2E+02 0.0042 29.8 6.9 47 585-634 151-197 (314)
146 1fov_A Glutaredoxin 3, GRX3; a 24.9 1.5E+02 0.0051 22.6 6.1 74 589-667 3-78 (82)
147 2gm2_A Conserved hypothetical 23.5 24 0.00082 31.7 1.0 39 583-621 61-100 (132)
148 3cpk_A Uncharacterized protein 23.1 33 0.0011 31.5 1.9 36 586-621 88-124 (150)
149 1cfz_A Hydrogenase 2 maturatio 22.8 1.1E+02 0.0036 28.2 5.4 56 588-647 2-64 (162)
150 1rtt_A Conserved hypothetical 22.1 55 0.0019 30.5 3.3 59 603-662 28-97 (193)
151 2yic_A 2-oxoglutarate decarbox 22.1 2.2E+02 0.0077 33.4 9.1 76 478-556 294-380 (868)
152 3l78_A Regulatory protein SPX; 21.5 1.5E+02 0.0053 25.5 6.0 41 596-637 8-48 (120)
153 3l9w_A Glutathione-regulated p 21.5 1.6E+02 0.0055 31.3 7.2 33 586-621 4-36 (413)
154 1kte_A Thioltransferase; redox 21.5 1.7E+02 0.0059 23.6 6.1 64 588-653 13-83 (105)
155 2fz5_A Flavodoxin; alpha/beta 21.4 1.7E+02 0.0058 24.9 6.3 33 591-623 3-39 (137)
156 1edz_A 5,10-methylenetetrahydr 21.0 1E+02 0.0035 31.8 5.4 57 585-643 176-251 (320)
157 3p2o_A Bifunctional protein fo 20.6 1E+02 0.0036 31.3 5.2 50 585-642 159-208 (285)
158 3fz4_A Putative arsenate reduc 20.6 1.3E+02 0.0045 26.0 5.3 42 596-638 11-52 (120)
159 2hze_A Glutaredoxin-1; thiored 20.6 2E+02 0.0068 24.0 6.4 64 588-654 20-91 (114)
160 3h8q_A Thioredoxin reductase 3 20.6 3.2E+02 0.011 22.8 7.8 67 586-655 16-87 (114)
161 3f6r_A Flavodoxin; FMN binding 20.4 1.6E+02 0.0056 25.6 6.1 29 595-623 13-41 (148)
162 3ngx_A Bifunctional protein fo 20.4 84 0.0029 31.8 4.4 35 585-621 149-183 (276)
163 2q0l_A TRXR, thioredoxin reduc 20.4 2E+02 0.0068 28.2 7.4 49 585-636 142-190 (311)
164 3fvw_A Putative NAD(P)H-depend 20.2 1.6E+02 0.0056 27.4 6.3 62 599-661 20-91 (192)
No 1
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.7e-109 Score=959.03 Aligned_cols=579 Identities=43% Similarity=0.713 Sum_probs=496.3
Q ss_pred CCCCCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHH
Q 005820 71 RPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYP 150 (676)
Q Consensus 71 ~~~~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~ 150 (676)
.+.||||++|++|.|+|+++.++|+++++++|+++++++++++||+|+++|+++++.+||++|+.|+|+||||+||++|+
T Consensus 7 ~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~ 86 (629)
T 2o1x_A 7 TSDTPLLDQIHGPKDLKRLSREQLPALTEELRGEIVRVCSRGGLHLASSLGAVDIITALHYVLDSPRDRILFDVGHQAYA 86 (629)
T ss_dssp CCSCTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHHTTSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEESSSTTCHH
T ss_pred CCCCchhhhCCChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCcCCCchhHHHHHHHHHhhcCCCCCeEEecCchHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH
Q 005820 151 HKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM 230 (676)
Q Consensus 151 ~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl 230 (676)
|++++|+.+.+.++||++|++|||++.+++++.+++|++|+++|+|+|+|+|+|+++++++|||++|||++++|++||||
T Consensus 87 ~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL 166 (629)
T 2o1x_A 87 HKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL 166 (629)
T ss_dssp HHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHh
Q 005820 231 NNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 310 (676)
Q Consensus 231 n~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~ 310 (676)
|+|+++++|+++|+|||++ ++ ..+++.++..+++++.++.|..++.+.+.+.+.+|.++.+...+..++++
T Consensus 167 ~~A~~~~~pli~IvnnN~~-~i--------~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~ 237 (629)
T 2o1x_A 167 NTIGDMGRKMLIVLNDNEM-SI--------SENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR 237 (629)
T ss_dssp HHHHHHCCSEEEEEEECSB-SS--------SBCCSSHHHHC---------------------------------------
T ss_pred HHHHhhCCCEEEEEECCCC-CC--------CCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999999999984 43 23455566777888888899988888777766565544444444445555
Q ss_pred hccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCcccc
Q 005820 311 GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGK 390 (676)
Q Consensus 311 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~ 390 (676)
.++.|.+..+|++|||++++++||||+++|.++++++++ .++|++||++|.||+|++++|+++.+||+.++|++.++.
T Consensus 238 ~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~~ 315 (629)
T 2o1x_A 238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVTTKGKGLSYAEADPIYWHGPAKFDPATGE 315 (629)
T ss_dssp ------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEECCTTTTCHHHHHCTTGGGSCCSBCTTTCC
T ss_pred hhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEEecCCCCChhHcCCcccccCccCCcCcCc
Confidence 555554448899999999889999999999999999987 479999999999999999999998899999999999885
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEEe
Q 005820 391 QFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCA 470 (676)
Q Consensus 391 ~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~ 470 (676)
..+. +..+|+++|+++|.+++++|++|+++++|+++++++..|+++||+||||+||+|++|+++|+|+|++|+|||++
T Consensus 316 ~~~~--~~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~ 393 (629)
T 2o1x_A 316 YVPS--SAYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVA 393 (629)
T ss_dssp BCCC--CCCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCGGGEEECCSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccc--chHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhcCcceEeccccHHHHHHHHHHHHHcCCEEEEE
Confidence 4222 25789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCC
Q 005820 471 IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDR 550 (676)
Q Consensus 471 t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~ 550 (676)
+|++|++|++|||++++|++++||+++++++|++|+||+|||+.+|+++++++|||+|++|+|++|+++++++|++ .++
T Consensus 394 ~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a~~-~~~ 472 (629)
T 2o1x_A 394 IYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDG 472 (629)
T ss_dssp EEHHHHGGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHH-SSS
T ss_pred ecHHHHHHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999999998 489
Q ss_pred CeEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH
Q 005820 551 PSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL 630 (676)
Q Consensus 551 P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~ 630 (676)
|++||++|+..+....+ ..+.+++|+++++++|+|++||++|+++..|++|++.|+ +++|||++|++|||+++
T Consensus 473 Pv~i~~~r~~~~~~~~~---~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~~~Pld~~~ 545 (629)
T 2o1x_A 473 PFAIRYPRGNTAQVPAG---TWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARFVKPLDEEM 545 (629)
T ss_dssp CEEEECCSSBCCCCCTT---CCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCEEESCCHHH
T ss_pred CEEEEecCCCCCCCccc---ccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCCCCCCcHHH
Confidence 99999999875432211 235678999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCCCCCccc
Q 005820 631 IRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVK 671 (676)
Q Consensus 631 i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~ld~~~~ 671 (676)
+.+++++++.+|||||+. .||||++|++++.+++ ++.|++
T Consensus 546 i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~-~~~~v~ 586 (629)
T 2o1x_A 546 LREVGGRARALITVEDNTVVGGFGGAVLEALNSMN-LHPTVR 586 (629)
T ss_dssp HHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTT-CCCEEE
T ss_pred HHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhC-CCCCeE
Confidence 999999999999999997 6999999999999998 345554
No 2
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-108 Score=951.48 Aligned_cols=579 Identities=50% Similarity=0.811 Sum_probs=470.1
Q ss_pred CCCCCCcccCCCCcccccccCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHH
Q 005820 70 QRPPTPLLDTINYPIHMKNLSIRELKQLADELRADVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTY 149 (676)
Q Consensus 70 ~~~~~~~l~~i~~~~~~~~~~~~~l~~la~~iR~~i~~~v~~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y 149 (676)
+.|.+|+|++|++|.|+|+++.++|+++|+++|+.+++++++++||+++++|++|++++||++|+.|+|+||||+|||+|
T Consensus 4 ~~~~~~~l~~i~~p~d~~~l~~~~l~~l~~~iR~~~~~~~~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y 83 (621)
T 2o1s_A 4 DIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVSRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAY 83 (621)
T ss_dssp CTTTSTTGGGCSSHHHHTTSCGGGHHHHHHHHHHHHHHHSCGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCH
T ss_pred CCCCCchhhhcCChHHhhhCCHHHHHHHHHHHHHHHHHHHhhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHH
Q 005820 150 PHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA 229 (676)
Q Consensus 150 ~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EA 229 (676)
+|++++|+.+++.++||.+|++|||++.+++++.|++|++|+++|+|+|+|+|+++++++++|||++|||++++|++|||
T Consensus 84 ~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~Vv~v~GDG~~~~G~~~Ea 163 (621)
T 2o1s_A 84 PHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMAFEA 163 (621)
T ss_dssp HHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCEEEEEETTGGGSHHHHHH
T ss_pred HHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH
Q 005820 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (676)
Q Consensus 230 ln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (676)
||+|+++++|+++|||||++ ++ ..+++.++..+++++.++.|+.+|.+.+.+.+..+. +.++..+..+++
T Consensus 164 L~~A~~~~~pli~vvnnN~~-~i--------~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~-~~~~~~r~~~~~ 233 (621)
T 2o1s_A 164 MNHAGDIRPDMLVILNDNEM-SI--------SENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPP-IKELLKRTEEHI 233 (621)
T ss_dssp HHHHHHHCCSEEEEEEECC-------------------------------------------------------------
T ss_pred HHHHHhhCCCEEEEEeCCCc-cc--------CCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccch-HHHHHHHHHHHh
Confidence 99999999999999999984 43 223444556677788888888877665544322110 023344444555
Q ss_pred hhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcccccCccc
Q 005820 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATG 389 (676)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g 389 (676)
+++..| ..+|++|||++++++||||+++|.++++++++ .++|++||++|+||+|++++|+++.+||+.++|++.++
T Consensus 234 ~~~~~p--~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~kg~G~~~~e~~~~~~H~~~~f~~~~~ 309 (621)
T 2o1s_A 234 KGMVVP--GTLFEELGFNYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSG 309 (621)
T ss_dssp -----C--HHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCCTTCCCCC------------------
T ss_pred hhccCh--hhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEecccCCChhhcCchhccCCCCCCCCcC
Confidence 554433 57899999999888999999999999999987 47999999999999999999998889999999999888
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCCeeEE
Q 005820 390 KQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFC 469 (676)
Q Consensus 390 ~~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~ 469 (676)
.+.+.+....+|+++|+++|.+++++|++|+++++|+++++++..|+++||+||||+||+|++|+++|+|+|++|+|||+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~~~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~ 389 (621)
T 2o1s_A 310 CLPKSSGGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIV 389 (621)
T ss_dssp --------CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHhCCCceEecCcCHHHHHHHHHHHHHCCCEEEE
Confidence 63223333568999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCC
Q 005820 470 AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDD 549 (676)
Q Consensus 470 ~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~ 549 (676)
++|++|++|++||+++++|++++||+++++++|++|+||+|||+.+|+++++++|||+|++|+|++|+++++++|++..+
T Consensus 390 ~~~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~~a~~~~~ 469 (621)
T 2o1s_A 390 AIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYND 469 (621)
T ss_dssp EEETTGGGGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHHHHCCS
T ss_pred EehHhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999998558
Q ss_pred CCeEEEecCCCCccccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHH
Q 005820 550 RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA 629 (676)
Q Consensus 550 ~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e 629 (676)
+|++||++|+..+....|+ .+.+++|+++++++|+|++||++|++++.|++| ++||+++|||++|++|||++
T Consensus 470 ~Pv~i~~~r~~~~~~~~~~---~~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~~~~P~d~~ 541 (621)
T 2o1s_A 470 GPSAVRYPRGNAVGVELTP---LEKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMRFVKPLDEA 541 (621)
T ss_dssp SCEEEECCSSBCCCCCCCC---CCCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECCEEESCCHH
T ss_pred CCEEEEeCCCCCCCCCCCc---cccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecCccCCCCHH
Confidence 9999999998765433332 256789999999999999999999999999999 45899999999999999999
Q ss_pred HHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCCCCCccc
Q 005820 630 LIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVK 671 (676)
Q Consensus 630 ~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~ld~~~~ 671 (676)
++.+++++++.+|+|||+. .||||++|++++.+++ ++.|++
T Consensus 542 ~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~-~~~~v~ 583 (621)
T 2o1s_A 542 LILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR-KPVPVL 583 (621)
T ss_dssp HHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTT-CCCCEE
T ss_pred HHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcC-CCCCeE
Confidence 9999999999999999997 6999999999999998 455554
No 3
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.9e-97 Score=853.86 Aligned_cols=521 Identities=25% Similarity=0.383 Sum_probs=449.7
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh-h----ccCC----CCccccCcCchH---H
Q 005820 83 PIHMKNLSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY-V----FNAP----KDRILWDVGHQT---Y 149 (676)
Q Consensus 83 ~~~~~~~~~~~l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~-~----~~~p----~D~~i~s~gH~~---y 149 (676)
...+.+.+++||+++|++||.++++++++ ++||+|++||++|++++||+ . +++| +||||||+||++ |
T Consensus 2 ~~~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~ly 81 (616)
T 3mos_A 2 YHKPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPILY 81 (616)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHHH
Confidence 35677788999999999999999999975 67999999999999999984 2 3333 899999999999 8
Q ss_pred HHHHHcCC--hHHhhhhHhcC-CCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC-CCeEEEEEcCCcccccc
Q 005820 150 PHKILTGR--RDKMHTMRQTD-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-KNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 150 ~~~~l~G~--~~~l~~~r~~~-gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~-~~~vv~viGDGa~~eG~ 225 (676)
+|++++|+ +++|.+|||+| +++|||++.++.++ +++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|+
T Consensus 82 ~~~~l~G~~~~~~l~~~r~~~s~l~ghp~~~~~~~d-~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~ 160 (616)
T 3mos_A 82 AVWAEAGFLAEAELLNLRKISSDLDGHPVPKQAFTD-VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGS 160 (616)
T ss_dssp HHHHHTTSSCGGGGGGTTCTTCSCCSSCCTTSTTCS-SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHH
T ss_pred HHHHHcCCCCHHHHHHhccCCCCCCCCCCCCCCccc-ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCc
Confidence 99999996 68899999998 69999998776555 6999999999999999999987665 69999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHH
Q 005820 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (676)
Q Consensus 226 ~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k 304 (676)
+|||+|+|+++++ |+++|+|||++ ++.+.+.. .. ...++..
T Consensus 161 ~~Eal~~A~~~~l~~livi~nnN~~-~i~~~~~~-----~~-------------------------------~~~~~~~- 202 (616)
T 3mos_A 161 VWEAMAFASIYKLDNLVAILDINRL-GQSDPAPL-----QH-------------------------------QMDIYQK- 202 (616)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSB-CSSSBCTT-----TT-------------------------------CHHHHHH-
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCC-CCcCCccc-----cc-------------------------------ChHHHHH-
Confidence 9999999999996 58899999984 44221110 00 0123333
Q ss_pred HHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCccc-
Q 005820 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVAK- 383 (676)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~- 383 (676)
+|++|||+++ +|||||+++|.++++++ .++|++||++|+||+|++.+| ++.+|||.++
T Consensus 203 ---------------~~~a~G~~~~-~VdG~d~~~l~~al~~~----~~~P~lI~v~T~kg~G~~~~e-~~~~~Hg~~~~ 261 (616)
T 3mos_A 203 ---------------RCEAFGWHAI-IVDGHSVEELCKAFGQA----KHQPTAIIAKTFKGRGITGVE-DKESWHGKPLP 261 (616)
T ss_dssp ---------------HHHHTTCEEE-EEETTCHHHHHHHHHSC----CSSCEEEEEECCTTTTSTTTT-TCSSCTTCCCC
T ss_pred ---------------HHHHcCCeEE-EEcCCCHHHHHHHHHhc----CCCCEEEEEEEeccccccccc-CchhhcCCCCC
Confidence 3999999998 88999999999999755 379999999999999998766 5678999753
Q ss_pred ----------cc--Cccccccc------------------------cchhhhhHHHHHHHHHHHHHHcCCCEEEEecccc
Q 005820 384 ----------FD--PATGKQFK------------------------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMG 427 (676)
Q Consensus 384 ----------fd--~~~g~~~~------------------------~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~ 427 (676)
++ ..+++... +.....+++++++++|.+++++||+|+++++|++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~ 341 (616)
T 3mos_A 262 KNMAEQIIQEIYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTK 341 (616)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCCCBCCCCCCCCCCCSCCCCSSCCCCCTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhhCcCccchhhhhhhhhccccCCCcccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcC
Confidence 11 01221110 0112346789999999999999999999999999
Q ss_pred CccchhhhhhhCCCceeeccccHHHHHHHHHHHHhcCC-eeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cC
Q 005820 428 GGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGL-KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VG 505 (676)
Q Consensus 428 gs~~l~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~G~-~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G 505 (676)
+++.+..|+++||+||||+||+|++|+++|+|+|++|. +|++.+|++|++|++|||++. +++++||+++++++|+ +|
T Consensus 342 ~~~~~~~~~~~~p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dqi~~~-a~~~~~v~~v~~~~g~~~G 420 (616)
T 3mos_A 342 NSTFSEIFKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMA-AISESNINLCGSHCGVSIG 420 (616)
T ss_dssp HHHSHHHHHHHCGGGEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHHHHHH-HHTTCCEEEEEESBSGGGC
T ss_pred CCcchhhHHHhCCCCeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHHHHHH-HHhCCCeEEEEECCCcccc
Confidence 88889999999999999999999999999999999997 799999999999999999875 8999999999999998 89
Q ss_pred CCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeec
Q 005820 506 ADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIE 585 (676)
Q Consensus 506 ~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~e 585 (676)
+||+|||+.+|+++++++||++|++|+|++|+..+++++++ .++|+++|++|+..+... .....+++||++++++
T Consensus 421 ~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a~~-~~gp~~ir~~r~~~p~~~----~~~~~~~~Gka~vl~e 495 (616)
T 3mos_A 421 EDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAVELAAN-TKGICFIRTSRPENAIIY----NNNEDFQVGQAKVVLK 495 (616)
T ss_dssp TTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHHHHHHT-CCSEEEEECCSSCCBCCS----CTTCCCCTTCCEEEEC
T ss_pred CCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh-cCCCEEEEEeCCCCCccC----CCcccccCCeEEEEEe
Confidence 99999999999999999999999999999999999999987 579999999998644321 1235678999999999
Q ss_pred CCc--EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC-CEEEEEcCCC-CCCHHHHHHHHHH
Q 005820 586 GER--VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH-EVLITVEEGS-IGGFGSHVVQFLA 661 (676)
Q Consensus 586 G~d--v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~-~~vIvvEe~~-~gG~gs~v~~~l~ 661 (676)
|.| ++||++|++++.|++|+++|+++||+++|||+++++|||+++|.++++++ ++||||||+. .||+|++|++++.
T Consensus 496 g~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~ 575 (616)
T 3mos_A 496 SKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVV 575 (616)
T ss_dssp CSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHT
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHH
Confidence 976 99999999999999999999999999999999999999999999999888 9999999997 7999999999999
Q ss_pred HcCCCCCccc
Q 005820 662 QDGLLDGTVK 671 (676)
Q Consensus 662 ~~~~ld~~~~ 671 (676)
+++ +.|++
T Consensus 576 ~~~--~~~v~ 583 (616)
T 3mos_A 576 GEP--GITVT 583 (616)
T ss_dssp TCT--TCEEE
T ss_pred hcC--CCCEE
Confidence 886 44444
No 4
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=1.9e-95 Score=835.66 Aligned_cols=501 Identities=23% Similarity=0.320 Sum_probs=430.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHhhcc--------CCCCccccCcCchH---HHHHHHcC
Q 005820 89 LSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN--------APKDRILWDVGHQT---YPHKILTG 156 (676)
Q Consensus 89 ~~~~~l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~~~~--------~p~D~~i~s~gH~~---y~~~~l~G 156 (676)
|+.++|+++|++||+++++++++ ++||+|++||++|++++||++|+ .|+||||||+||++ |+|++|+|
T Consensus 1 ~~~~~l~~~a~~iR~~~i~~v~~a~~GH~g~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G 80 (632)
T 3l84_A 1 MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG 80 (632)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhC
Confidence 46789999999999999999986 99999999999999999988775 25899999999999 99999999
Q ss_pred Ch---HHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC-------CCeEEEEEcCCcccccc
Q 005820 157 RR---DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR-------KNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 157 ~~---~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~-------~~~vv~viGDGa~~eG~ 225 (676)
++ ++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|+
T Consensus 81 ~~~~~~~l~~~r~~~s~~~ghp~~-~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~ 159 (632)
T 3l84_A 81 YDLSLEDLKNFRQLHSKTPGHPEI-STLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGI 159 (632)
T ss_dssp CSCCHHHHTTTTCTTCSSCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHH
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCC-CCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhcc
Confidence 94 889999999985 799999 8999999999999999999999999998764 89999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHH
Q 005820 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (676)
Q Consensus 226 ~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k 304 (676)
+|||+++|+++++ |+|+|+|||++ ++.+.. ... ..+++.
T Consensus 160 ~~Eal~~A~~~~L~~livi~nnN~~-~i~~~~--------~~~-----------------------------~~~d~~-- 199 (632)
T 3l84_A 160 SYEACSLAGLHKLDNFILIYDSNNI-SIEGDV--------GLA-----------------------------FNENVK-- 199 (632)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSE-ETTEEG--------GGT-----------------------------CCCCHH--
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCc-ccccch--------hhh-----------------------------cChhHH--
Confidence 9999999999995 59999999984 432211 000 002233
Q ss_pred HHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc--
Q 005820 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA-- 382 (676)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~-- 382 (676)
.+|++|||+++ +|||||+++|.++|+++++ .++|++||++|+||+|++++|+ +.+|||.+
T Consensus 200 --------------~~~~a~G~~~~-~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~kG~G~~~~e~-~~~~Hg~~l~ 261 (632)
T 3l84_A 200 --------------MRFEAQGFEVL-SINGHDYEEINKALEQAKK--STKPCLIIAKTTIAKGAGELEG-SHKSHGAPLG 261 (632)
T ss_dssp --------------HHHHHTTCEEE-EEETTCHHHHHHHHHHHHT--CSSCEEEEEECCTTTTCGGGTT-CGGGSSSCCC
T ss_pred --------------HHHHHcCCeEE-EEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEeeecCCCCCC-cccccCCCCC
Confidence 34999999999 8999999999999999987 5899999999999999998765 47899986
Q ss_pred -----------------cccCccc------------cccc--------c-----------------------chhhhhHH
Q 005820 383 -----------------KFDPATG------------KQFK--------S-----------------------SARTQSYT 402 (676)
Q Consensus 383 -----------------~fd~~~g------------~~~~--------~-----------------------~~~~~~~~ 402 (676)
+|+..++ +... . .......+
T Consensus 262 ~e~~~~~~~~l~~~~~~~f~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~a~r 341 (632)
T 3l84_A 262 EEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFKGKDLATR 341 (632)
T ss_dssp HHHHHHHHHHHTCCTTCCSCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSTTCCCCCCTTCCBCHH
T ss_pred HHHHHHHHHHhCCCCCCCccCChHHHHHHHHHHhhcchhHHHHHHHhhcccCchhhhhhCccchhhhcchhccccchHHH
Confidence 4654322 1000 0 00234567
Q ss_pred HHHHHHHHHHHHcCCCEEEEeccccCccchh-hhhhhC-CCceeeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHHH
Q 005820 403 TYFAEALIAEAEVDKDVVAIHAAMGGGTGLN-LFLRRF-PTRCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRA 479 (676)
Q Consensus 403 ~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~-~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~t~~~Fl~ra 479 (676)
+++.++|.++++.+|+++++++|++++++.. .+.++| |+||||+||+|++|+++|+|||+. |++||++||++|++|+
T Consensus 342 ~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~f~~F~~~~ 421 (632)
T 3l84_A 342 DSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSATFFIFSEYL 421 (632)
T ss_dssp HHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEecccCCccCcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHH
Confidence 8889999999999999999999998766543 223678 999999999999999999999999 8999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecC
Q 005820 480 YDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPR 558 (676)
Q Consensus 480 ~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r 558 (676)
++||+ ++|++++||++++++.|+ +|+||+|||+++|+++||++|||+|++|+|++|++.++++|++ .++|++||++|
T Consensus 422 ~~~ir-~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~-~~~Pv~ir~~r 499 (632)
T 3l84_A 422 KPAAR-IAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALN-ADIPSAFVLSR 499 (632)
T ss_dssp HHHHH-HHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH-CSSCEEEECCS
T ss_pred HHHHH-HHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh-CCCCEEEEEcC
Confidence 99985 689999999999977776 8999999999999999999999999999999999999999998 78999999999
Q ss_pred CCCccccCCCCCCCCccccCce-eEeec--CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH--HHH
Q 005820 559 GNGIGVELPPGNKGIPLEVGKG-RILIE--GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL--IRS 633 (676)
Q Consensus 559 ~~~~~~~~p~~~~~~~~~~gk~-~vl~e--G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~--i~~ 633 (676)
+.. ++.. ..+..+++++ +++++ |+|++||++|++++.|++|+++|+++||+++|||++|++|||++. +++
T Consensus 500 ~~~----~~~~-~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~i~PlD~~~~~~~~ 574 (632)
T 3l84_A 500 QKL----KALN-EPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFEKQDKAYQE 574 (632)
T ss_dssp SCB----CCCC-CCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSBHHHHHTSCHHHHH
T ss_pred CCC----CCCc-cccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCcCCCcchhHHHHHH
Confidence 874 2321 1234567776 89999 899999999999999999999999999999999999999999974 444
Q ss_pred HhccCCEEEEEcCCCCCCHHHHH
Q 005820 634 LAKSHEVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 634 ~~~~~~~vIvvEe~~~gG~gs~v 656 (676)
.+.+ +.||+||++...||++.+
T Consensus 575 sv~~-~~vv~vE~~~~~g~~~~~ 596 (632)
T 3l84_A 575 RLLK-GEVIGVEAAHSNELYKFC 596 (632)
T ss_dssp HHCC-SEEEEECSSCCGGGGGTC
T ss_pred HhcC-CCEEEEeCChhhhHHHHh
Confidence 4444 678999999988887654
No 5
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-94 Score=833.15 Aligned_cols=502 Identities=20% Similarity=0.263 Sum_probs=432.5
Q ss_pred HHHHHHHH-HHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh-hcc-C-------CCCccccCcCchH---HHHHHHcC
Q 005820 91 IRELKQLA-DELRADVIFNVSK-TGGHLGSSLGVIELTVALHY-VFN-A-------PKDRILWDVGHQT---YPHKILTG 156 (676)
Q Consensus 91 ~~~l~~la-~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~-~~~-~-------p~D~~i~s~gH~~---y~~~~l~G 156 (676)
.+||+++| ++||.++++|+++ ++||+|++||++|++++||+ +|+ + +|||||||+||++ |+|++|+|
T Consensus 19 ~~~l~~~a~~~iR~~~~~~v~~a~sGH~g~~ls~a~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~s~~lYa~l~l~G 98 (700)
T 3rim_A 19 WTEIDSAAVDTIRVLAADAVQKVGNGHPGTAMSLAPLAYTLFQRTMRHDPSDTHWLGRDRFVLSAGHSSLTLYIQLYLGG 98 (700)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCCCCCCeEEECCCchhHHHHHHHHHhC
Confidence 35799999 8999999999985 78999999999999999996 675 3 3899999999999 99999999
Q ss_pred C---hHHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhc-------------CCCCeEEEEEcCC
Q 005820 157 R---RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLK-------------GRKNNVVAVIGDG 219 (676)
Q Consensus 157 ~---~~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~-------------~~~~~vv~viGDG 219 (676)
+ .++|++|||.|+ ++|||++.+++++.+++|++|+++|+|+|||+|.|++ +.+++|||++|||
T Consensus 99 ~~~~~~~l~~fr~~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 99 FGLELSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp SSCCHHHHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred CCCCHHHHHHhhcCCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 9 789999999998 6999999889999999999999999999999999985 5689999999999
Q ss_pred cccccchHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCch
Q 005820 220 AMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPM 298 (676)
Q Consensus 220 a~~eG~~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~ 298 (676)
+++||++|||+|+|++|++ |||+|+|||++ ++.+.+... ..
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~-si~~~~~~~-------------------------------------~~ 220 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQI-SIEDDTNIA-------------------------------------LC 220 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGGT-------------------------------------CC
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCc-ccccchhhc-------------------------------------cc
Confidence 9999999999999999997 59999999994 542221100 01
Q ss_pred HHHHHHHHHHHhhccCCCccchhhhcCceeeccC-CCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcc
Q 005820 299 HELAAKVDEYARGMISGSGSTLFEELGLYYIGPV-DGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADK 377 (676)
Q Consensus 299 ~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~v-dGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~ 377 (676)
+++..+ |++|||+++ .| ||||+++|.++++++++. .++|++|+++|+||+|++++|+. .+
T Consensus 221 ~~~~~~----------------~~a~G~~~~-~V~DG~D~~al~~Al~~A~~~-~~~P~lI~~~T~kG~G~~~~e~~-~~ 281 (700)
T 3rim_A 221 EDTAAR----------------YRAYGWHVQ-EVEGGENVVGIEEAIANAQAV-TDRPSFIALRTVIGYPAPNLMDT-GK 281 (700)
T ss_dssp CCHHHH----------------HHHHTCEEE-EEECTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTTS-HH
T ss_pred hhHHHH----------------HHHcCCeEE-EECCCCCHHHHHHHHHHHHHc-CCCCEEEEEEEEeeecCCccCCC-cc
Confidence 234444 999999998 46 999999999999999863 57999999999999999999864 67
Q ss_pred cCCccc-------------------ccCcc------------ccc------------------------------cc---
Q 005820 378 YHGVAK-------------------FDPAT------------GKQ------------------------------FK--- 393 (676)
Q Consensus 378 ~H~~~~-------------------fd~~~------------g~~------------------------------~~--- 393 (676)
|||.++ |+..+ |+. .+
T Consensus 282 ~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~ 361 (700)
T 3rim_A 282 AHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWARREPERKALLDRLLAQKLPDGW 361 (700)
T ss_dssp HHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTT
T ss_pred ccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhChHHHHHHHHHhccCCCcch
Confidence 999764 44321 110 00
Q ss_pred ----c----chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccc-----hhhhhhhC------C----CceeeccccH
Q 005820 394 ----S----SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTG-----LNLFLRRF------P----TRCFDVGIAE 450 (676)
Q Consensus 394 ----~----~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~-----l~~f~~~~------p----~R~id~GIaE 450 (676)
+ ..+..+++++++++|.+++++||+|+++++|++++++ +..|+++| | +||||+||+|
T Consensus 362 ~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE 441 (700)
T 3rim_A 362 DADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVRE 441 (700)
T ss_dssp TSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCH
T ss_pred hhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccH
Confidence 0 0123468899999999999999999999999987766 46899998 8 5999999999
Q ss_pred HHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEE
Q 005820 451 QHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVV 528 (676)
Q Consensus 451 ~~~v~~A~GlA~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V 528 (676)
|+|+++|+|||++ |++||++||..|+.++++|| +++|++++||++++++.|+ +|+||||||+++|+++||++|||+|
T Consensus 442 ~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~i-r~~al~~lpvv~v~thdg~gvG~dG~THq~ied~a~lr~iPnl~V 520 (700)
T 3rim_A 442 HAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAV-RLAALMDIDTIYVWTHDSIGLGEDGPTHQPIEHLSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTSCSSHHHHHHTSTTCEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHH-HHhcCCCCCEEEEEeCCCcccCCCCCccCChhHHHHHhcCCCCEE
Confidence 9999999999999 99999999999998888886 4689999999999987776 8999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHhCC--CCeEEEecCCCCccccCCCCCCCCccccCceeEeecCC--------cEEEEEechhH
Q 005820 529 MAPSDEAELFHMVATAAAIDD--RPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE--------RVALLGYGTAV 598 (676)
Q Consensus 529 ~~Psd~~E~~~~~~~al~~~~--~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~--------dv~Iva~Gs~v 598 (676)
++|+|++|++.++++|++..+ +|++||++|+..+. ++.. ..+.+++|+ +++++|+ |++||++|+++
T Consensus 521 ~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~~--~~~~-~~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v 596 (700)
T 3rim_A 521 VRPADANETAYAWRTILARRNGSGPVGLILTRQGVPV--LDGT-DAEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEV 596 (700)
T ss_dssp ECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEECC--CTTC-CHHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGH
T ss_pred EeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCCC--cCcc-cccccCCCc-EEEecCCccccCCCCCEEEEEechHH
Confidence 999999999999999998655 69999999987543 2221 124577887 8999986 99999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccCcCcH---HHHHHHhcc-CCEEEEEcCCCCCCHHH
Q 005820 599 QSCLAASALLESNGLRLTVADARFCKPLDH---ALIRSLAKS-HEVLITVEEGSIGGFGS 654 (676)
Q Consensus 599 ~~aleAa~~L~~~Gi~v~VId~~~l~P~d~---e~i~~~~~~-~~~vIvvEe~~~gG~gs 654 (676)
+.|++|+++|+++||+++|||++|++|||. +++.+++++ ++.+|+||++...||.+
T Consensus 597 ~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~~~vtvEe~~~~G~~~ 656 (700)
T 3rim_A 597 QLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVSARVAVEAGVAQCWHQ 656 (700)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCCCEEEECSSCSGGGHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccceEEEEEeCCCchhHHH
Confidence 999999999999999999999999999999 566667765 78899999998767643
No 6
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=1.3e-94 Score=835.14 Aligned_cols=512 Identities=22% Similarity=0.301 Sum_probs=425.1
Q ss_pred ccccCHHHHHHHH-HHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh-hcc--------CCCCccccCcCchH---HHH
Q 005820 86 MKNLSIRELKQLA-DELRADVIFNVSK-TGGHLGSSLGVIELTVALHY-VFN--------APKDRILWDVGHQT---YPH 151 (676)
Q Consensus 86 ~~~~~~~~l~~la-~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~-~~~--------~p~D~~i~s~gH~~---y~~ 151 (676)
++|+..++|+++| ++||.++++|+++ ++||+|++||++|++++||+ +|+ .+|||||||+||++ |+|
T Consensus 21 ~~~~~~~~l~~~a~~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~ 100 (690)
T 3m49_A 21 QSNAMSHSIEQLSINTIRTLSIDAIEKANSGHPGMPMGAAPMAYTLWTQFMKHNPNNPTWFNRDRFVLSAGHGSMLLYSL 100 (690)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEESSGGGHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEECCccHHHHHHHH
Confidence 5666667799999 8999999999975 99999999999999999994 554 14899999999999 999
Q ss_pred HHHcCC---hHHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEc
Q 005820 152 KILTGR---RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIG 217 (676)
Q Consensus 152 ~~l~G~---~~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viG 217 (676)
++|+|+ .++|++|||+|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++. +++|||++|
T Consensus 101 l~l~G~~~~~~~l~~~rq~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~G 180 (690)
T 3m49_A 101 LHLSGYDVTMDDLKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICG 180 (690)
T ss_dssp HHHTTSSCCHHHHTTTTCTTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEEC
T ss_pred HHHHCCCCCHHHHHhhccCCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEEC
Confidence 999999 7999999999985 59999999999999999999999999999999997753 899999999
Q ss_pred CCcccccchHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCC
Q 005820 218 DGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGG 296 (676)
Q Consensus 218 DGa~~eG~~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~ 296 (676)
||++++|++|||+++|+++++ |+|+|+|||++ ++.+..... .
T Consensus 181 DG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~-~i~~~~~~~-------~----------------------------- 223 (690)
T 3m49_A 181 DGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDI-SLDGDLNRS-------F----------------------------- 223 (690)
T ss_dssp HHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSB-CSSSBGGGT-------C-----------------------------
T ss_pred chhhhhccHHHHHHHHHHhCCCeEEEEEECCCe-ecccchhhc-------c-----------------------------
Confidence 999999999999999999995 69999999984 442211100 0
Q ss_pred chHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhc
Q 005820 297 PMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAAD 376 (676)
Q Consensus 297 ~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~ 376 (676)
.+++. .+|++|||+++.++||||+++|.++|+++++. .++|++||++|+||+|++++| ++.
T Consensus 224 -~~d~~----------------~~~~a~G~~~~~v~DG~d~~~l~~Al~~a~~~-~~~P~lI~v~T~kG~G~~~~~-~~~ 284 (690)
T 3m49_A 224 -SESVE----------------DRYKAYGWQVIRVEDGNDIEAIAKAIEEAKAD-EKRPTLIEVRTTIGFGSPNKS-GKS 284 (690)
T ss_dssp -CCCHH----------------HHHHHHTCEEEEESCTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT-TSG
T ss_pred -chhHH----------------HHHHHcCCcEEEEecCCCHHHHHHHHHHHHhc-CCCCEEEEEEeecccccCccc-Ccc
Confidence 02233 34999999999777999999999999999862 479999999999999997755 557
Q ss_pred ccCCcc-------------------cccCccccc------c-------------------------------------c-
Q 005820 377 KYHGVA-------------------KFDPATGKQ------F-------------------------------------K- 393 (676)
Q Consensus 377 ~~H~~~-------------------~fd~~~g~~------~-------------------------------------~- 393 (676)
+|||.+ +|++.++.. . +
T Consensus 285 ~~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~lp~ 364 (690)
T 3m49_A 285 ASHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGLLPE 364 (690)
T ss_dssp GGTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCT
T ss_pred cccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhcccCch
Confidence 899986 466544310 0 0
Q ss_pred ---------cchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhhh-CCCceeeccccHHHHHHHHH
Q 005820 394 ---------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR-FPTRCFDVGIAEQHAVTFAA 458 (676)
Q Consensus 394 ---------~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~-~p~R~id~GIaE~~~v~~A~ 458 (676)
...+..+++++++++|.++++++|+++++++|++++++. ..|+++ +|+||||+||+|++|+++|+
T Consensus 365 ~~~~~~~~~~~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~ 444 (690)
T 3m49_A 365 GWEQNLPTYELGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMN 444 (690)
T ss_dssp TGGGGCCCCCTTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHH
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHH
Confidence 000123678889999999999999999999999877654 467765 58999999999999999999
Q ss_pred HHHhc-CCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHH
Q 005820 459 GLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 536 (676)
Q Consensus 459 GlA~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E 536 (676)
|||++ |+|||++||..|..++..|| +++|++++||+++++++|+ +|+||||||+++|+++||++|||+|++|+|++|
T Consensus 445 GlA~~gG~~P~~~tf~~Fs~f~~~ai-r~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~E 523 (690)
T 3m49_A 445 GIALHGGLKTYGGTFFVFSDYLRPAI-RLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRPADGNE 523 (690)
T ss_dssp HHHHHSSCEEEEEEEGGGGGGGHHHH-HHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECCSSHHH
T ss_pred HHHHcCCCEEEEEecHHHHHHHHHHH-HHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEeeCCHHH
Confidence 99999 89999998755554334454 5689999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCccccCceeEeecCC----cEEEEEechhHHHHHHHHHHHHhCC
Q 005820 537 LFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPLEVGKGRILIEGE----RVALLGYGTAVQSCLAASALLESNG 612 (676)
Q Consensus 537 ~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG~----dv~Iva~Gs~v~~aleAa~~L~~~G 612 (676)
++.++++|++..++|++||++|+..+..........+.++.|+ +++++|+ |++||++|++++.|++|+++|+++|
T Consensus 524 ~~~~l~~Ai~~~~~Pv~ir~~R~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~Al~Aa~~L~~~G 602 (690)
T 3m49_A 524 SVAAWRLALESTNKPTALVLTRQDLPTLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSLAVEAQKALAVDG 602 (690)
T ss_dssp HHHHHHHHHHCSSSCEEEECCSSEEECCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCEEEEeecccCCCCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHHHHHHHHHHHhcC
Confidence 9999999998657999999999875432110000013456776 7899985 9999999999999999999999999
Q ss_pred CcEEEEEccccCcCcH---HHHHHHh-ccCCEEEEEcCCCCCCHHHH
Q 005820 613 LRLTVADARFCKPLDH---ALIRSLA-KSHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 613 i~v~VId~~~l~P~d~---e~i~~~~-~~~~~vIvvEe~~~gG~gs~ 655 (676)
|+++|||++|++|||. +++.+++ ++++.+|+||++...||.+.
T Consensus 603 I~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G~~~~ 649 (690)
T 3m49_A 603 VDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRY 649 (690)
T ss_dssp CCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHH
T ss_pred CCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhhHHHH
Confidence 9999999999999985 5666666 46788999999997777543
No 7
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=8.4e-93 Score=823.58 Aligned_cols=512 Identities=24% Similarity=0.328 Sum_probs=440.1
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh---hcc------CCCCccccCcCchH---H
Q 005820 83 PIHMKNLSIRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFN------APKDRILWDVGHQT---Y 149 (676)
Q Consensus 83 ~~~~~~~~~~~l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~---~~~------~p~D~~i~s~gH~~---y 149 (676)
|.+.|+|+.++|+++|++||+++++|+++ ++||+|++||++|++++||+ .|+ .++||||||+||++ |
T Consensus 5 ~~~~~~l~~~~l~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lY 84 (675)
T 1itz_A 5 TLQGKAATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQY 84 (675)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHH
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccCccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHHHH
Confidence 56789999999999999999999999986 89999999999999999994 454 25899999999999 9
Q ss_pred HHHHHcCCh----HHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEE
Q 005820 150 PHKILTGRR----DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVA 214 (676)
Q Consensus 150 ~~~~l~G~~----~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~ 214 (676)
+|++|+|+. ++|.+|||.|++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||
T Consensus 85 a~l~l~G~~~~~~~~l~~~r~~~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~ 164 (675)
T 1itz_A 85 ALLHLAGYDSVKEEDLKQFRQWGSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYV 164 (675)
T ss_dssp HHHHHHTCTTCCHHHHTTTTSTTCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEE
T ss_pred HHHHHcCCCCCCHHHHHhcccCCCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEE
Confidence 999999995 889999999986 8999998999999999999999999999999998876 7899999
Q ss_pred EEcCCcccccchHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcc
Q 005820 215 VIGDGAMTAGQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQ 293 (676)
Q Consensus 215 viGDGa~~eG~~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~ 293 (676)
++|||++++|++|||+++|+++++ |+|+|+|||++ ++.+.+.. .+
T Consensus 165 i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~-------~~-------------------------- 210 (675)
T 1itz_A 165 ILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI-SIDGDTEI-------AF-------------------------- 210 (675)
T ss_dssp EECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGG-------TC--------------------------
T ss_pred EECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc-cCCCChhh-------hc--------------------------
Confidence 999999999999999999999994 89999999984 43221100 00
Q ss_pred cCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCC-CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhh
Q 005820 294 IGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAE 372 (676)
Q Consensus 294 ~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae 372 (676)
..++. .+|++|||++++++||| |+++|.++++++++. .++|++||++|.||+|++++|
T Consensus 211 ----~~d~~----------------~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~ 269 (675)
T 1itz_A 211 ----TEDVS----------------TRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAV-TDKPTLIKVTTTIGFGSPNKA 269 (675)
T ss_dssp ----CSCHH----------------HHHHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTT
T ss_pred ----ChhHH----------------HHHHhCCCEEEEEecCCCCHHHHHHHHHHHHHC-CCCeEEEEEeeecccCccccc
Confidence 02233 34999999998889999 999999999999863 479999999999999999886
Q ss_pred hhhcccCCcc------------------cccCccccc--------------------cc---------------------
Q 005820 373 KAADKYHGVA------------------KFDPATGKQ--------------------FK--------------------- 393 (676)
Q Consensus 373 ~~~~~~H~~~------------------~fd~~~g~~--------------------~~--------------------- 393 (676)
++.+|||.+ +|+..++.. +.
T Consensus 270 -~~~~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 348 (675)
T 1itz_A 270 -NSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGEL 348 (675)
T ss_dssp -TSGGGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCCC
T ss_pred -CcccccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHHHhhhhhhHHHHHHHHHHhhhhChHHHHHHHHHhcccC
Confidence 457899973 565533210 00
Q ss_pred ------------cchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhh-hCCCceeeccccHHHHHH
Q 005820 394 ------------SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAVT 455 (676)
Q Consensus 394 ------------~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~-~~p~R~id~GIaE~~~v~ 455 (676)
...+..+++++++++|.++++.+|+++++++|+++++++ ..|++ +||+||||+||+|++|++
T Consensus 349 p~~~~~~~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~R~id~gIaE~~~v~ 428 (675)
T 1itz_A 349 PTGWVDALPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTAEERNVRFGVREHGMGA 428 (675)
T ss_dssp CTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCTTCCBCCCCSCHHHHHH
T ss_pred CchhhhhhhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCCCCCeEeecccHHHHHH
Confidence 011345688999999999999999999999999877654 34887 999999999999999999
Q ss_pred HHHHHHhcC--CeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecC
Q 005820 456 FAAGLACEG--LKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPS 532 (676)
Q Consensus 456 ~A~GlA~~G--~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Ps 532 (676)
+|+|||++| ++||++||++|+.++++||+ ++|++++||++++++.|. +|+||+|||+.+|+++++++|||+|++|+
T Consensus 429 ~a~GlA~~G~~~~P~~~t~~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pa 507 (675)
T 1itz_A 429 ICNGIALHSPGFVPYCATFFVFTDYMRGAMR-ISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA 507 (675)
T ss_dssp HHHHHHTTCTTCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEECCC
T ss_pred HHHHHHhcCCCCEEEEEEHHHHHHHHHHHHH-HHHhcCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEEECC
Confidence 999999999 99999999999999999975 589999999999977766 79999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCC-ccccCceeEeec---C--CcEEEEEechhHHHHHHHHH
Q 005820 533 DEAELFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIE---G--ERVALLGYGTAVQSCLAASA 606 (676)
Q Consensus 533 d~~E~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~~gk~~vl~e---G--~dv~Iva~Gs~v~~aleAa~ 606 (676)
|++|++.++++|++..++|++||++|+..+.. +. ..+ .+++| ++++++ | +|++||++|++++.|++|++
T Consensus 508 d~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p~~--~~--~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~al~Aa~ 582 (675)
T 1itz_A 508 DGNETAGAYKVAVLNRKRPSILALSRQKLPHL--PG--TSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEIAAKAAD 582 (675)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEECSSCBCCC--TT--CCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEecCCCCCCC--CC--ccccccccC-CEEEecccCCCCCCEEEEEECHHHHHHHHHHH
Confidence 99999999999998558999999999875432 22 122 46778 688988 7 89999999999999999999
Q ss_pred HHHhCCCcEEEEEccccCcCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHH
Q 005820 607 LLESNGLRLTVADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 607 ~L~~~Gi~v~VId~~~l~P~d~e---~i~~~~~~~-~~vIvvEe~~~gG~gs~v 656 (676)
+|+++||+++|||++|++|||++ ++.++++++ +++|+||++..+||++++
T Consensus 583 ~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~G~~~~~ 636 (675)
T 1itz_A 583 ELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGSTLGWQKYV 636 (675)
T ss_dssp HHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTTTHHHH
T ss_pred HHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCccccHHHhc
Confidence 99999999999999999999988 477777775 789999999889999754
No 8
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=2.8e-93 Score=822.52 Aligned_cols=506 Identities=21% Similarity=0.302 Sum_probs=425.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh---hccC------CCCccccCcCchH---HHHHHHcCC
Q 005820 91 IRELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFNA------PKDRILWDVGHQT---YPHKILTGR 157 (676)
Q Consensus 91 ~~~l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~---~~~~------p~D~~i~s~gH~~---y~~~~l~G~ 157 (676)
+..++++|++||+++++++++ ++||+|++||++|++++||+ .|+. ||||||||+||++ |++++|+|+
T Consensus 3 ~~~~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~ 82 (663)
T 3kom_A 3 LSIPREFSNAIRFLSIDATLKAKSGHPGMPMGMADIATVLWTKFLKHNPNNPHWINRDRFVLSNGHGSMLLYSLLHLTGY 82 (663)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTSCEEEECSSSCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHhhheeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCC
Confidence 334678999999999999985 99999999999999999964 4543 5899999999999 999999998
Q ss_pred ---hHHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEcCCcccc
Q 005820 158 ---RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTA 223 (676)
Q Consensus 158 ---~~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viGDGa~~e 223 (676)
.++|++|||.|++ +|||++..++++.+++|++|+++|+|+|+|+|.++++. +++|||++|||++++
T Consensus 83 ~~~~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~e 162 (663)
T 3kom_A 83 DLSIEDIKNFRQLHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLME 162 (663)
T ss_dssp SCCHHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHS
T ss_pred CCCHHHHHhhccCCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhh
Confidence 3889999999985 79999888899999999999999999999999998764 799999999999999
Q ss_pred cchHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHH
Q 005820 224 GQAYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELA 302 (676)
Q Consensus 224 G~~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~ 302 (676)
|++|||+++|+++++ |+|+|+|||++ ++.+.. ... + .+++.
T Consensus 163 G~~~Eal~~A~~~~L~~livi~dnN~~-~i~~~~--------~~~------------~-----------------~~d~~ 204 (663)
T 3kom_A 163 GVSHEACSLAGTLGLNKLVAFWDDNNI-SIDGDT--------KGW------------F-----------------SDNTP 204 (663)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEECC------CG--------GGT------------C-----------------CCCHH
T ss_pred chHHHHHHHHHHhCCCeEEEEEECCCc-ccccch--------hhh------------c-----------------chhHH
Confidence 999999999999996 59999999994 432211 100 0 02333
Q ss_pred HHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc
Q 005820 303 AKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA 382 (676)
Q Consensus 303 ~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~ 382 (676)
.+|++|||+++++|||||+++|.++|+++++. .++|++||++|+||+|++++|+. .+|||.+
T Consensus 205 ----------------~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~~~e~~-~~~Hg~~ 266 (663)
T 3kom_A 205 ----------------ERFRAYGWHVIENVDGHDFVAIEKAINEAHSQ-QQKPTLICCKTVIGFGSPEKAGT-ASVHGSP 266 (663)
T ss_dssp ----------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-SSSCEEEEEECCTTTTCTTTTTC-SSTTSSC
T ss_pred ----------------HHHHHCCCeEEEEEcCCCHHHHHHHHHHHHhc-CCCCEEEEEecccccccCCCCCC-ccccCCC
Confidence 34999999999889999999999999999863 37999999999999999988654 6899974
Q ss_pred ------------------cccCccc-----------cc----------------------------ccc-----------
Q 005820 383 ------------------KFDPATG-----------KQ----------------------------FKS----------- 394 (676)
Q Consensus 383 ------------------~fd~~~g-----------~~----------------------------~~~----------- 394 (676)
+|+..++ +. .+.
T Consensus 267 l~~e~~~~~~~~l~~~~~pf~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~ 346 (663)
T 3kom_A 267 LSDQERASAAKELNWDYQAFEIPQDVYKYWDAREKGQALEANWQGQRNLFKDSPKFDEFERVLSKELPVGLESAINDYIA 346 (663)
T ss_dssp CCHHHHHHHHHHTTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCccCChhHHHHHHHHhhcchhhHHHHHHHHHhhcchHHHHHHHHhccCCCcchhhhhhhhhh
Confidence 4554332 00 000
Q ss_pred ----chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhh-hhCCCceeeccccHHHHHHHHHHHHhc-
Q 005820 395 ----SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFL-RRFPTRCFDVGIAEQHAVTFAAGLACE- 463 (676)
Q Consensus 395 ----~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~-~~~p~R~id~GIaE~~~v~~A~GlA~~- 463 (676)
+.+..+++++++++|.++++.+|+++++++|++++++. ..|+ ++||+||||+||+|++|+++|+|||++
T Consensus 347 ~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~p~R~~d~GIaE~~~v~~a~GlA~~g 426 (663)
T 3kom_A 347 SQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQEGANYLSYGVREFGMAAIMNGLSLYG 426 (663)
T ss_dssp HHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCSTTCCEEECCSCHHHHHHHHHHHHHHS
T ss_pred hhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccCCCCeEecCccHHHHHHHHHHHHHcC
Confidence 01234678889999999999999999999999877654 2574 899999999999999999999999999
Q ss_pred CCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHH
Q 005820 464 GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVA 542 (676)
Q Consensus 464 G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~ 542 (676)
|+|||++||++|++++++||+ +++++++||++++++.|. +|+||+|||+++|+++||++|||+|++|+|++|++.+++
T Consensus 427 G~~P~~~tf~~F~~~~~~~ir-~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~ 505 (663)
T 3kom_A 427 GIKPYGGTFLVFSDYSRNAIR-MSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIETMIAWK 505 (663)
T ss_dssp SCEEEEEEEGGGHHHHHHHHH-HHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred CCEEEEEehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence 999999999999999999984 689999999999877666 899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCCccccCCCCCC-CCccccCceeEeec--CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEE
Q 005820 543 TAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--GERVALLGYGTAVQSCLAASALLESNGLRLTVAD 619 (676)
Q Consensus 543 ~al~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~e--G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId 619 (676)
+|++..++|++||++|+..+.. +.... .+.++.| .+++++ |+|++||++|++++.|++|+++|+++||+++|||
T Consensus 506 ~A~~~~~~Pv~ir~~r~~~p~~--~~~~~~~~~~~~G-~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~ 582 (663)
T 3kom_A 506 EAVKSKDTPSVMVLTRQNLMPV--VQTQHQVANIARG-GYLVKDNPDAKLTIVATGSEVELAVKVANEFEKKGIKLNVAS 582 (663)
T ss_dssp HHHHCSSCCEEEECCSSEECCC--CCCHHHHHHHTTT-CEEEECCTTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHhCCCCEEEEccCccCCCc--CccccchhcccCc-eEEEEecCCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9998678999999999874321 11000 0234455 478888 7999999999999999999999999999999999
Q ss_pred ccccCcCcHHH---HHHHhccCCEEEEEcCCCCCCHHHHH
Q 005820 620 ARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 620 ~~~l~P~d~e~---i~~~~~~~~~vIvvEe~~~gG~gs~v 656 (676)
++|++|||++. +.+++++...+|++|++...||.+.+
T Consensus 583 ~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~~g~~~~~ 622 (663)
T 3kom_A 583 IPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQPDMWYKYM 622 (663)
T ss_dssp CSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCCGGGGGGC
T ss_pred cCcCCcccccHHHHHHHhcCCCCeEEEEecCCcccHHHHh
Confidence 99999999986 45566777789999998888887654
No 9
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=1.1e-92 Score=820.41 Aligned_cols=501 Identities=24% Similarity=0.324 Sum_probs=409.4
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh---hccC------CCCccccCcCchH---HHHHHHcCCh--
Q 005820 94 LKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFNA------PKDRILWDVGHQT---YPHKILTGRR-- 158 (676)
Q Consensus 94 l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~---~~~~------p~D~~i~s~gH~~---y~~~~l~G~~-- 158 (676)
.+++|++||+++++++++ ++||+|++||++|++++||. .|+. ++||||||+||++ |++++|+|+.
T Consensus 45 ~~~~a~~iR~~~i~~v~~a~~GH~g~~l~~aei~~~L~~~~~~~~~~~p~~~~rDrfvls~GH~s~~lYa~l~l~G~~~~ 124 (711)
T 3uk1_A 45 TTLMANAIRALAMDAVQQANSGHPGMPMGMAEIGVALWSRHLKHNPTNPHWADRDRFVLSNGHGSMLLYSLLHLTGYDLP 124 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHHTCCCCTTCTTCTTCCEEEECSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHhhhEeeCCCCCCCCCCCeEEEeCCcccHHHHHHHHHhCCCCC
Confidence 456999999999999985 89999999999999999974 4543 4899999999999 9999999983
Q ss_pred -HHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCC----------CCeEEEEEcCCcccccch
Q 005820 159 -DKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGR----------KNNVVAVIGDGAMTAGQA 226 (676)
Q Consensus 159 -~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~----------~~~vv~viGDGa~~eG~~ 226 (676)
++|++|||.|++ +|||+....++..+++|++|+++|+|+|+|+|.++++. +++|||++|||++++|++
T Consensus 125 ~~~l~~~r~~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~ 204 (711)
T 3uk1_A 125 IEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGIS 204 (711)
T ss_dssp HHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHhhccccCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccH
Confidence 889999999984 79998877888889999999999999999999998764 789999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHH
Q 005820 227 YEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (676)
Q Consensus 227 ~EAln~A~~~~~~-li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~ 305 (676)
|||+++|+++++| +|+|+|||++ ++.+.. +.. ...++.
T Consensus 205 ~Eal~~A~~~~L~~livI~dnN~~-~i~~~~--------~~~-----------------------------~~~d~~--- 243 (711)
T 3uk1_A 205 HEACSLAGTLKLNKLIALYDDNGI-SIDGDV--------VNW-----------------------------FHDDTP--- 243 (711)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSE-ETTEEG--------GGT-----------------------------CCCCHH---
T ss_pred HHHHHHHHHhCCCcEEEEEECCCc-ccccch--------hhh-----------------------------cCCCHH---
Confidence 9999999999965 9999999984 432111 000 002233
Q ss_pred HHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc---
Q 005820 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA--- 382 (676)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~--- 382 (676)
.+|++|||+++.++||||+++|.++++++++ .++|++||++|+||+|++++| ++.+|||.+
T Consensus 244 -------------~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG~G~~~~e-~~~~~Hg~~l~~ 307 (711)
T 3uk1_A 244 -------------KRFEAYGWNVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIGNGAATKA-GGHDVHGAPLGA 307 (711)
T ss_dssp -------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---------------------CH
T ss_pred -------------HHHHHcCCcEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccccCCCCCC-CcccccCCCCCH
Confidence 3499999999977999999999999999987 589999999999999998766 457899975
Q ss_pred ---------------cccCcc-----------cccc------------------------------cc------------
Q 005820 383 ---------------KFDPAT-----------GKQF------------------------------KS------------ 394 (676)
Q Consensus 383 ---------------~fd~~~-----------g~~~------------------------------~~------------ 394 (676)
+|+..+ |+.. +.
T Consensus 308 e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~~~~~~ 387 (711)
T 3uk1_A 308 DEIAKTREALGWTWAPFVIPQEVYAAWDAKEAGKRSEDDWNAAFAQYRAKYPAEAAEFERRMAGTLPADWAAKAAAIVAG 387 (711)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCccCChHHHHHHHHHhccchhHHHHHHHHHHHHhhChhhHHHHHHhhccCCCchHHHHhhHhhhh
Confidence 465433 2100 00
Q ss_pred ---chhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhhh---CC---CceeeccccHHHHHHHHHHH
Q 005820 395 ---SARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRR---FP---TRCFDVGIAEQHAVTFAAGL 460 (676)
Q Consensus 395 ---~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~---~p---~R~id~GIaE~~~v~~A~Gl 460 (676)
+.+..+++++++++|.++++.+|+++++++|++++++. ..|+++ || +||||+||+|++|+++|+||
T Consensus 388 ~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~p~~~~R~~d~GIaE~~mv~~AaGl 467 (711)
T 3uk1_A 388 ANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGPGVQWGNHINYGVREFGMSAAINGL 467 (711)
T ss_dssp HHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSSSEECCSEEECCSCHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccCCCCCCcEEEeCccHHHHHHHHHHH
Confidence 01123567888899999999999999999999877544 478888 99 99999999999999999999
Q ss_pred Hhc-CCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHH
Q 005820 461 ACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELF 538 (676)
Q Consensus 461 A~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~ 538 (676)
|++ |++||+++|++|++|+++||+ ++|++++||++++++.|+ +|+||+|||+++|+++|+++|||+|++|+|++|++
T Consensus 468 A~~~G~~Pv~~~f~~F~~~~~~~ir-~~a~~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~ 546 (711)
T 3uk1_A 468 VLHGGYKPFGGTFLTFSDYSRNALR-VAALMKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPADTVETA 546 (711)
T ss_dssp HHHSSCEEEEEEEGGGHHHHHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred HHcCCCEEEEEEhHHHHHHHHHHHH-HhhhcCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecCCHHHHH
Confidence 995 999999999999999999985 589999999999987776 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEecCCCCccccCCCCCC-CCccccCceeEeec--C----CcEEEEEechhHHHHHHHHHHHHhC
Q 005820 539 HMVATAAAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--G----ERVALLGYGTAVQSCLAASALLESN 611 (676)
Q Consensus 539 ~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~e--G----~dv~Iva~Gs~v~~aleAa~~L~~~ 611 (676)
.++++|++ .++|++||++|++.+.. +.... .+.++.|+ +++++ | +|++||++|++++.|++|+++|+++
T Consensus 547 ~~l~~Ai~-~~~Pv~ir~~r~~~p~~--~~~~~~~~~i~~G~-~vl~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~~ 622 (711)
T 3uk1_A 547 VAWTYAVA-HQHPSCLIFSRQNLAFN--ARTDAQLANVEKGG-YVLRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQ 622 (711)
T ss_dssp HHHHHHHH-SSSCEEEECCSSEECCC--CCCHHHHHHGGGSS-EEEECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCCEEEEeeCCCCCCC--CCccccccccCCCe-EEEEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHHc
Confidence 99999998 78999999999875431 11000 13456666 57775 7 7999999999999999999999999
Q ss_pred CCcEEEEEccccCcCcHHH---HHHHhccCCEEEEEcCCCCCCHHHHH
Q 005820 612 GLRLTVADARFCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 612 Gi~v~VId~~~l~P~d~e~---i~~~~~~~~~vIvvEe~~~gG~gs~v 656 (676)
||+++|||++|++|||++. +.+++++...+|++|++..+||++++
T Consensus 623 GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~~g~~~~~ 670 (711)
T 3uk1_A 623 GIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVTDFWRKYV 670 (711)
T ss_dssp TEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCSGGGHHHH
T ss_pred CCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCccccHHHHh
Confidence 9999999999999999875 44555665679999999988898765
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=5.2e-91 Score=809.12 Aligned_cols=499 Identities=22% Similarity=0.294 Sum_probs=430.1
Q ss_pred HHHH-HHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh--hccC------CCCccccCcCchH---HHHHHHcCC--
Q 005820 93 ELKQ-LADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY--VFNA------PKDRILWDVGHQT---YPHKILTGR-- 157 (676)
Q Consensus 93 ~l~~-la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~--~~~~------p~D~~i~s~gH~~---y~~~~l~G~-- 157 (676)
+|++ +|++||.++++++++ ++||+|++||++|++++||+ .|+. ++||||||+||++ |+|++|+|+
T Consensus 6 ~l~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~ 85 (680)
T 1gpu_A 6 DIDKLAVSTIRILAVDTVSKANSGHPGAPLGMAPAAHVLWSQMRMNPTNPDWINRDRFVLSNGHAVALLYSMLHLTGYDL 85 (680)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHhCCCCccCCCCCCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 6888 999999999999986 89999999999999999997 6653 4899999999999 999999999
Q ss_pred -hHHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccc
Q 005820 158 -RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 158 -~~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~ 225 (676)
.++|.+|||.|++ +|||++ +++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|+
T Consensus 86 ~~~~l~~~r~~g~~~~ghp~~-~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~ 164 (680)
T 1gpu_A 86 SIEDLKQFRQLGSRTPGHPEF-ELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGI 164 (680)
T ss_dssp CHHHHTTTTCTTCSCCSSCCT-TSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhcccCCCCCCCCCc-cCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhh
Confidence 7899999999995 999998 899999999999999999999999999775 488999999999999999
Q ss_pred hHHHHHHhhhcCCC-EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHH
Q 005820 226 AYEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (676)
Q Consensus 226 ~~EAln~A~~~~~~-li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k 304 (676)
+|||+|+|+++++| +|+|+|||++ ++.+.+... + ..++.
T Consensus 165 ~~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~~-------~------------------------------~~d~~-- 204 (680)
T 1gpu_A 165 SSEASSLAGHLKLGNLIAIYDDNKI-TIDGATSIS-------F------------------------------DEDVA-- 204 (680)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGGT-------C------------------------------CCCHH--
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCc-eEecccccc-------c------------------------------CccHH--
Confidence 99999999999955 9999999984 442211000 0 01233
Q ss_pred HHHHHhhccCCCccchhhhcCceeeccCCCC-CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc-
Q 005820 305 VDEYARGMISGSGSTLFEELGLYYIGPVDGH-NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA- 382 (676)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vdGh-d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~- 382 (676)
.+|++|||+++++|||| |+++|.++++++++. .++|++||++|.||+|++ . .++.+||+.+
T Consensus 205 --------------~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~~-~~~P~lI~~~T~kg~G~~-~-~~~~~~H~~~~ 267 (680)
T 1gpu_A 205 --------------KRYEAYGWEVLYVENGNEDLAGIAKAIAQAKLS-KDKPTLIKMTTTIGYGSL-H-AGSHSVHGAPL 267 (680)
T ss_dssp --------------HHHHHHTCEEEEESCTTTCHHHHHHHHHHHHHC-TTSCEEEEEECCTTTTST-T-TTSGGGSSSCC
T ss_pred --------------HHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHC-CCCCEEEEEEeecccccc-c-CCCCccCCCCC
Confidence 34999999998889999 999999999999863 479999999999999999 3 4456899975
Q ss_pred ------------------cccCccccc---------------------c-------c-----------------------
Q 005820 383 ------------------KFDPATGKQ---------------------F-------K----------------------- 393 (676)
Q Consensus 383 ------------------~fd~~~g~~---------------------~-------~----------------------- 393 (676)
+|+..++.. + +
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~a~~~~~~~~~~~p~~~~~~~~ 347 (680)
T 1gpu_A 268 KADDVKQLKSKFGFNPDKSFVVPQEVYDHYQKTILKPGVEANNKWNKLFSEYQKKFPELGAELARRLSGQLPANWESKLP 347 (680)
T ss_dssp CHHHHHHHHHHTTCCTTCCSCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTGGGGSC
T ss_pred CHHHHHHHHHHcCCCcCCCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhChHHHHHHHHHhcccCCchhhhhch
Confidence 465533210 0 0
Q ss_pred ---cchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhh------hCCCceeeccccHHHHHHHHHH
Q 005820 394 ---SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR------RFPTRCFDVGIAEQHAVTFAAG 459 (676)
Q Consensus 394 ---~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~------~~p~R~id~GIaE~~~v~~A~G 459 (676)
...+..+++++++++|.++++.+|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|
T Consensus 348 ~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~p~R~~d~gIaE~~~vg~a~G 427 (680)
T 1gpu_A 348 TYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNG 427 (680)
T ss_dssp CCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHH
T ss_pred hhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCCCCceecCCccHHHHHHHHHH
Confidence 012335688999999999999999999999999877653 46888 9999999999999999999999
Q ss_pred HHhcC-Ce-eEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHH
Q 005820 460 LACEG-LK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAE 536 (676)
Q Consensus 460 lA~~G-~~-p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E 536 (676)
||++| ++ ||+++|++|+.++++||+ ++|++++||++++++.|. +|+||+|||+.+|+++++++||++|++|+|++|
T Consensus 428 lA~~Gg~~~P~~~~f~~F~~~~~~air-~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e 506 (680)
T 1gpu_A 428 ISAFGANYKPYGGTFLNFVSYAAGAVR-LSALSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVWRPADGNE 506 (680)
T ss_dssp HHHHCTTCEEEEEEEHHHHGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEECCCSHHH
T ss_pred HHhcCCCceEEEeehHHHHHHHHHHHH-HHHhcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCCCCEEEecCCHHH
Confidence 99998 99 999999999999999975 589999999999977776 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEecCCCCccccCCCCCCCCc-cccCceeEeecC--CcEEEEEechhHHHHHHHHHHHHhCCC
Q 005820 537 LFHMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIP-LEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGL 613 (676)
Q Consensus 537 ~~~~~~~al~~~~~P~~ir~~r~~~~~~~~p~~~~~~~-~~~gk~~vl~eG--~dv~Iva~Gs~v~~aleAa~~L~~~Gi 613 (676)
++.++++|++..++|++||++|+..+.. +. ..+. +++| ++++++| +|++||++|++++.|++|+++|+++||
T Consensus 507 ~~~~l~~A~~~~~~Pv~i~~~r~~~~~~--~~--~~~~~~~~G-~~vl~~g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi 581 (680)
T 1gpu_A 507 VSAAYKNSLESKHTPSIIALSRQNLPQL--EG--SSIESASKG-GYVLQDVANPDIILVATGSEVSLSVEAAKTLAAKNI 581 (680)
T ss_dssp HHHHHHHHHHCSSCCEEEECCSSCBCCC--TT--CCHHHHTTS-CEEEECCSSCSEEEEECTHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCC--CC--cchhhccCC-CEEEecCCCCCEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 9999999998558999999999875432 22 1233 5677 5899998 899999999999999999999999999
Q ss_pred cEEEEEccccCcCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHH
Q 005820 614 RLTVADARFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 614 ~v~VId~~~l~P~d~e---~i~~~~~~~-~~vIvvEe~~~gG~gs~v 656 (676)
+++|||++|++|||++ ++.++++++ +. |+||++..+||+++|
T Consensus 582 ~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~-v~vE~~~~~g~~~~v 627 (680)
T 1gpu_A 582 KARVVSLPDFFTFDKQPLEYRLSVLPDNVPI-MSVEVLATTCWGKYA 627 (680)
T ss_dssp CEEEEECSCHHHHHHSCHHHHHHHSCSSSCE-EEECSSCSTTGGGTC
T ss_pred CEEEEEcCCCCcchhhhHHHHHHHhccCCce-EEEeCCccccHHHhc
Confidence 9999999999999998 577777775 66 999999889998765
No 11
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=5.7e-91 Score=805.82 Aligned_cols=498 Identities=22% Similarity=0.289 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh---hcc------CCCCccccCcCchH---HHHHHHcCC---hH
Q 005820 96 QLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFN------APKDRILWDVGHQT---YPHKILTGR---RD 159 (676)
Q Consensus 96 ~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~---~~~------~p~D~~i~s~gH~~---y~~~~l~G~---~~ 159 (676)
++|++||+++++|+++ ++||+|++||++|++++||+ .|+ .++||||||+||++ |+|++|+|+ .+
T Consensus 10 ~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~lYa~l~l~G~~~~~~ 89 (651)
T 2e6k_A 10 LSVNAIRFLAIDAVEKARSGHPGMPMGMAPLAYLLFREVMRHNPLDPDWPDRDRFVLSAGHGSMLLYAVLHLTGYDLPLE 89 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCcchhHHHHHHHHHHHHhcCCccCCCCCCCCeEEEeCcchhHHHHHHHHHhCCCCCHH
Confidence 5899999999999986 99999999999999999994 454 25899999999999 999999999 88
Q ss_pred HhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccchHH
Q 005820 160 KMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQAYE 228 (676)
Q Consensus 160 ~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~~~E 228 (676)
+|.+|||++++ +|||++.+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++||
T Consensus 90 ~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~E 169 (651)
T 2e6k_A 90 ELKSFRQWGSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGE 169 (651)
T ss_dssp HHTTTTSTTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHH
T ss_pred HHHHhhccCCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHH
Confidence 99999999996 8999998899999999999999999999999999776 689999999999999999999
Q ss_pred HHHHhhhcCCC-EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHH
Q 005820 229 AMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDE 307 (676)
Q Consensus 229 Aln~A~~~~~~-li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~ 307 (676)
|+++|+++++| +|+|+|||++ ++.+.+... + ..++.
T Consensus 170 al~~A~~~~L~~li~i~~nN~~-~i~~~~~~~-------~------------------------------~~d~~----- 206 (651)
T 2e6k_A 170 AASLAGHWGLSKLIVFWDDNRI-SIDGPTDLA-------F------------------------------TEDVL----- 206 (651)
T ss_dssp HHHHHHHTTCTTEEEEEEECCE-ETTEEGGGT-------C------------------------------CSCHH-----
T ss_pred HHHHHHHcCCCeEEEEEECCCc-ccccccccc-------c------------------------------CccHH-----
Confidence 99999999955 9999999994 432211000 0 01233
Q ss_pred HHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc-----
Q 005820 308 YARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA----- 382 (676)
Q Consensus 308 ~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~----- 382 (676)
.+|++|||++++++||||+++|.++++++++ .++|++||++|.||+|++ . .++.+||+.+
T Consensus 207 -----------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~kg~G~~-~-~~~~~~H~~~~~~~e 271 (651)
T 2e6k_A 207 -----------ARYRAYGWQTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHIGFGSP-K-QDSAKAHGEPLGPEA 271 (651)
T ss_dssp -----------HHHHHTTCEEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCTTTTST-T-TTSGGGTSSCCHHHH
T ss_pred -----------HHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEeccccc-c-cccccccccCCCHHH
Confidence 3499999999888999999999999999987 579999999999999999 4 4567899986
Q ss_pred -------------cccCcccccc--c------------------------c-----------c-----------hhhhhH
Q 005820 383 -------------KFDPATGKQF--K------------------------S-----------S-----------ARTQSY 401 (676)
Q Consensus 383 -------------~fd~~~g~~~--~------------------------~-----------~-----------~~~~~~ 401 (676)
+|+..++... . . + .+..++
T Consensus 272 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 351 (651)
T 2e6k_A 272 VEATRRNLGWPYPPFVVPEEVYRHMDMREKGRAWQEAWEKALEAYARAYPDLHQELMRRLRGELPPLPEEPPSFDKPIAT 351 (651)
T ss_dssp HHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCCCCCSCCCCCSCBCH
T ss_pred HHHHHHHcCCCcccccCChHHHHHHHHhhhchhhHHHHHHHHHHhhhhChHHHHHHHHHhcCcCCchhhhccccCccHHH
Confidence 5655432100 0 0 0 013568
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhh-hCCCceeeccccHHHHHHHHHHHHhcC-CeeEEeechh
Q 005820 402 TTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLR-RFPTRCFDVGIAEQHAVTFAAGLACEG-LKPFCAIYSS 474 (676)
Q Consensus 402 ~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~-~~p~R~id~GIaE~~~v~~A~GlA~~G-~~p~~~t~~~ 474 (676)
+++++++|.++++.+|+++++++|+++++++ ..|++ +||+||||+||+|++|+++|+|+|++| ++||++||+.
T Consensus 352 r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~ 431 (651)
T 2e6k_A 352 RAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANPLGRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLV 431 (651)
T ss_dssp HHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCCCCceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHH
Confidence 8999999999999999999999999977754 45887 999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeE
Q 005820 475 FMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSC 553 (676)
Q Consensus 475 Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ 553 (676)
|+.++++|| ++++++++||++++++.|. +|+||+|||+.+|++++|++|||+|++|+|++|++.++++|++..++|++
T Consensus 432 F~~~~~~ai-r~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~~~Pv~ 510 (651)
T 2e6k_A 432 FSDYMRPAI-RLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRKEGPTA 510 (651)
T ss_dssp GGGGSHHHH-HHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHH-HHHHhcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcCCCCEE
Confidence 988888886 5689999999999877776 79999999999999999999999999999999999999999985579999
Q ss_pred EEecCCCCccccCCCCCCCCccccCceeEeecC--CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHH--
Q 005820 554 FRYPRGNGIGVELPPGNKGIPLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA-- 629 (676)
Q Consensus 554 ir~~r~~~~~~~~p~~~~~~~~~~gk~~vl~eG--~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e-- 629 (676)
||++|+..+.. +.. ....++.| ++++++| +|++||++|+++..|++|+++|+++||+++|||++|++|||++
T Consensus 511 i~~~r~~~~~~--~~~-~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~~~~~p~d~~~~ 586 (651)
T 2e6k_A 511 LVLTRQAVPLL--SPE-KARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRVRVVSLPSFELFAAQPE 586 (651)
T ss_dssp EECCSSCBCCC--CHH-HHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSCHHHHHTSCH
T ss_pred EEEeCCCCCCC--Ccc-hhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEecCcCCccccccH
Confidence 99999875322 210 01135566 5889988 8999999999999999999999999999999999999999998
Q ss_pred -HHHHHhccCCEEEEEcCCCCCCHHHHH
Q 005820 630 -LIRSLAKSHEVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 630 -~i~~~~~~~~~vIvvEe~~~gG~gs~v 656 (676)
++.+++++++.+|+||++..+||++++
T Consensus 587 ~~~~~v~~~~~~vv~vE~~~~~G~~~~v 614 (651)
T 2e6k_A 587 AYRKEVLPPGLPVVAVEAGASLGWERYA 614 (651)
T ss_dssp HHHHHHSCTTSCEEEECSSCCTTGGGTC
T ss_pred HHHHHHhCcCCeEEEEeCCccCchHHhC
Confidence 477888887889999999889999765
No 12
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.9e-90 Score=803.65 Aligned_cols=503 Identities=22% Similarity=0.299 Sum_probs=429.7
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh---hccC------CCCccccCcCchH---HHHHHHcCC---
Q 005820 94 LKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFNA------PKDRILWDVGHQT---YPHKILTGR--- 157 (676)
Q Consensus 94 l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~---~~~~------p~D~~i~s~gH~~---y~~~~l~G~--- 157 (676)
|+++|++||+++++|+++ ++||+|++||++|++++||+ .|+. ++||||||+||++ |+|++|+|+
T Consensus 4 ~~~~a~~iR~~~~~~v~~a~~GH~g~~l~~~~i~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~lYa~~~l~G~~~~ 83 (669)
T 2r8o_A 4 RKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLP 83 (669)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCCchhHHHHHHHHHHHhhcCCcCCCCCCCCCeEEEeCccHHHHHHHHHHHcCCCCC
Confidence 778999999999999985 89999999999999999994 3542 4899999999999 999999999
Q ss_pred hHHhhhhHhcCCC-CCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccch
Q 005820 158 RDKMHTMRQTDGL-SGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQA 226 (676)
Q Consensus 158 ~~~l~~~r~~~gl-~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~~ 226 (676)
.++|.+|||.|++ +|||+..+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||++++|++
T Consensus 84 ~~~l~~~r~~~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~ 163 (669)
T 2r8o_A 84 MEELKNFRQLHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGIS 163 (669)
T ss_dssp HHHHTTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHH
T ss_pred HHHHHHhhcCCCCCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHH
Confidence 8999999999996 8999988899999999999999999999999998765 4889999999999999999
Q ss_pred HHHHHHhhhcCCC-EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHH
Q 005820 227 YEAMNNAGYLDSD-MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (676)
Q Consensus 227 ~EAln~A~~~~~~-li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~ 305 (676)
|||+++|+++++| +|+|+|||++ ++.+.+... + .+++.
T Consensus 164 ~Eal~~A~~~~L~~li~i~~nN~~-~i~~~~~~~-------~------------------------------~~d~~--- 202 (669)
T 2r8o_A 164 HEVCSLAGTLKLGKLIAFYDDNGI-SIDGHVEGW-------F------------------------------TDDTA--- 202 (669)
T ss_dssp HHHHHHHHHTTCTTEEEEEEECSE-ETTEEGGGT-------C------------------------------CCCHH---
T ss_pred HHHHHHHHHcCCCcEEEEEECCCc-Eeccccccc-------c------------------------------CccHH---
Confidence 9999999999955 9999999984 432211000 0 01233
Q ss_pred HHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCc----
Q 005820 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGV---- 381 (676)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~---- 381 (676)
.+|++|||+++++|||||+++|.++++++++. .++|++||++|.||+|++++++ ..+||+.
T Consensus 203 -------------~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~~-~~~P~lI~~~T~kg~G~~~~~~-~~~~H~~~~~~ 267 (669)
T 2r8o_A 203 -------------MRFEAYGWHVIRDIDGHDAASIKRAVEEARAV-TDKPSLLMCKTIIGFGSPNKAG-THDSHGAPLGD 267 (669)
T ss_dssp -------------HHHHHTTCEEEEEEETTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTTTT-SGGGTSSCCCH
T ss_pred -------------HHHHHCCCeEEeEECCCCHHHHHHHHHHHHhc-CCCCEEEEEEeEeccCcCCcCC-CCcccCCCCCH
Confidence 34999999998789999999999999999863 4799999999999999998654 4689986
Q ss_pred --------------ccccCccccc-----------------------------------------cc-------------
Q 005820 382 --------------AKFDPATGKQ-----------------------------------------FK------------- 393 (676)
Q Consensus 382 --------------~~fd~~~g~~-----------------------------------------~~------------- 393 (676)
.+|+..++.. ++
T Consensus 268 ee~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~ 347 (669)
T 2r8o_A 268 AEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMPSDFDAKAKEFIAK 347 (669)
T ss_dssp HHHHHHHHHHTCCCCTTCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHhcccCChhhhhhhHHHhhh
Confidence 3455432200 00
Q ss_pred --cchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccch-----hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CC
Q 005820 394 --SSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-----NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GL 465 (676)
Q Consensus 394 --~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-----~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~ 465 (676)
...+..+++++++++|.++++.+|+++++++|+++++++ ..|+++||+||||+||+|++|+++|+|||++ |+
T Consensus 348 ~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~p~R~id~GIaE~~~v~~a~GlA~~gG~ 427 (669)
T 2r8o_A 348 LQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAIANGISLHGGF 427 (669)
T ss_dssp HHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCTTCSEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred hcCCCccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccCCCCeeecchhHHHHHHHHHHHHHcCCC
Confidence 011234678889999999999999999999999877654 3799999999999999999999999999999 89
Q ss_pred eeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHH
Q 005820 466 KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (676)
Q Consensus 466 ~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~a 544 (676)
+||+++|++|+.++++||++ +|++++||++++++.|+ +|+||+|||+.+|+++++++||++|++|+|++|++.++++|
T Consensus 428 ~P~~~tf~~F~~~~~~~ir~-~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a 506 (669)
T 2r8o_A 428 LPYTSTFLMFVEYARNAVRM-AALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYG 506 (669)
T ss_dssp EEEEEEEGGGGGTTHHHHHH-HHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHH
T ss_pred eEEEeehHHHHHHHHHHHHH-HHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHH
Confidence 99999999999999999865 89999999999987776 79999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEecCCCCccccCCCCCC-CCccccCceeEeec--C-CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEc
Q 005820 545 AAIDDRPSCFRYPRGNGIGVELPPGNK-GIPLEVGKGRILIE--G-ERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (676)
Q Consensus 545 l~~~~~P~~ir~~r~~~~~~~~p~~~~-~~~~~~gk~~vl~e--G-~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~ 620 (676)
++..++|++||++|+..+. ++.... ...+++| ++++++ | +|++||++|+++..|++|+++|+++||+++|||+
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~~Vv~~ 583 (669)
T 2r8o_A 507 VERQDGPTALILSRQNLAQ--QERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSM 583 (669)
T ss_dssp HHCSSSCEEEECCSSEECC--CCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHhCCCcEEEEeCCCCCCC--CCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9855899999999987432 222100 0125677 488888 8 8999999999999999999999999999999999
Q ss_pred cccCcCcHH---HHHHHhccC-CEEEEEcCCCCCCHHHHH
Q 005820 621 RFCKPLDHA---LIRSLAKSH-EVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 621 ~~l~P~d~e---~i~~~~~~~-~~vIvvEe~~~gG~gs~v 656 (676)
+|++|||++ ++.++++++ +++|+||++..+||++.+
T Consensus 584 ~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~~g~~~~~ 623 (669)
T 2r8o_A 584 PSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYV 623 (669)
T ss_dssp SCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEGGGGHHHH
T ss_pred ccCCccccchHHHHHHhccccCceEEEEeCCchhhHHHHh
Confidence 999999988 577788774 789999999888998643
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=4.2e-89 Score=791.73 Aligned_cols=500 Identities=21% Similarity=0.291 Sum_probs=429.3
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHh---hcc--C----CCCccccCcCchH---HHHHHHcCC--
Q 005820 93 ELKQLADELRADVIFNVSK-TGGHLGSSLGVIELTVALHY---VFN--A----PKDRILWDVGHQT---YPHKILTGR-- 157 (676)
Q Consensus 93 ~l~~la~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~---~~~--~----p~D~~i~s~gH~~---y~~~~l~G~-- 157 (676)
+|+++|++||+++++|+.+ ++||+|++||++|++++||+ .|+ + +|||||||+||++ |++++|+|+
T Consensus 5 ~~~~~a~~iR~~~~~~v~~a~~GH~g~~ls~a~~~~~L~~~~l~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~ 84 (673)
T 1r9j_A 5 SIEKVANCIRCLAADIVQGGKSGHPGTPMGMAPMSAVLWTEVMKYNSQDPDWVDRDRFVMSNGHGCALQYALLHMAGYNL 84 (673)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSCCHHHHHTHHHHHHHHHTTCCCCTTCTTCTTCCEEEESSGGGHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCCCCCCeEEEccccHHHHHHHHHHHcCCCC
Confidence 3788999999999999986 99999999999999999986 343 2 3899999999999 999999999
Q ss_pred -hHHhhhhHhcCC-CCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcC----------CCCeEEEEEcCCcccccc
Q 005820 158 -RDKMHTMRQTDG-LSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKG----------RKNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 158 -~~~l~~~r~~~g-l~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~----------~~~~vv~viGDGa~~eG~ 225 (676)
.++|.+|||.|+ ++|||+..+++++.+++|++|+++|+|+|+|+|.++++ .+++|||++|||+++||+
T Consensus 85 ~~~~l~~~r~~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~ 164 (673)
T 1r9j_A 85 TMDDLKGFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGV 164 (673)
T ss_dssp CHHHHHTTTSTTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHH
T ss_pred CHHHHHhhccCCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccH
Confidence 589999999998 57999988899999999999999999999999999775 689999999999999999
Q ss_pred hHHHHHHhhhcCC-CEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHH
Q 005820 226 AYEAMNNAGYLDS-DMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAK 304 (676)
Q Consensus 226 ~~EAln~A~~~~~-~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k 304 (676)
+|||+++|+++++ |+|+|+|||++ ++.+.+... + .+++..+
T Consensus 165 ~~Eal~~A~~~~L~~li~i~d~N~~-~i~~~~~~~-------~------------------------------~~d~~~~ 206 (673)
T 1r9j_A 165 CQEALSLAGHLALEKLIVIYDSNYI-SIDGSTSLS-------F------------------------------TEQCHQK 206 (673)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSB-CSSSBGGGT-------C------------------------------CCCHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCC-ccccchhhc-------c------------------------------CHhHHHH
Confidence 9999999999995 59999999984 432211100 0 0233433
Q ss_pred HHHHHhhccCCCccchhhhcCceeeccCCC-CCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhhhhcccCCcc-
Q 005820 305 VDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVA- 382 (676)
Q Consensus 305 ~~~~~~~~~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~- 382 (676)
|++|||+++.++|| ||+++|.++++++++. .++|++|+++|+||+|++ .| +..+||+.+
T Consensus 207 ----------------~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~~-~~~P~lI~~~T~kg~G~~-~~-~~~~~H~~~~ 267 (673)
T 1r9j_A 207 ----------------YVAMGFHVIEVKNGDTDYEGLRKALAEAKAT-KGKPKMIVQTTTIGFGSS-KQ-GTEKVHGAPL 267 (673)
T ss_dssp ----------------HHHTTCEEEEESCTTTCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTST-TT-TSGGGTSSCC
T ss_pred ----------------HHHCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CCCCEEEEEecccccccc-cC-CCcccccCCC
Confidence 99999999878999 9999999999998863 579999999999999998 44 457899963
Q ss_pred ------------------cccCccc------------cc--------cc------c------------c-----------
Q 005820 383 ------------------KFDPATG------------KQ--------FK------S------------S----------- 395 (676)
Q Consensus 383 ------------------~fd~~~g------------~~--------~~------~------------~----------- 395 (676)
+|...++ +. +. + +
T Consensus 268 ~~ee~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~~~p~~~~~~~p~ 347 (673)
T 1r9j_A 268 GEEDIANIKAKFGRDPQKKYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRGELPSGWEAKLPT 347 (673)
T ss_dssp CHHHHHHHHHHTTSCSSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCTTTGGGSCC
T ss_pred CHHHHHHHHHhcCCCCcccccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcCCCCchhhhhccc
Confidence 2322111 00 00 0 0
Q ss_pred -hhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCccchh--h-----hhh-hCCCceeeccccHHHHHHHHHHHHhc-CC
Q 005820 396 -ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGLN--L-----FLR-RFPTRCFDVGIAEQHAVTFAAGLACE-GL 465 (676)
Q Consensus 396 -~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l~--~-----f~~-~~p~R~id~GIaE~~~v~~A~GlA~~-G~ 465 (676)
.+..+++++++++|.++++++|+++++++|+++++++. + |++ +||+||||+||+|++|+++|+|+|++ |+
T Consensus 348 ~~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~~~R~id~GIaE~~~~~~a~GlA~~GG~ 427 (673)
T 1r9j_A 348 NSSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSKEGRYIRFGVREHAMCAILNGLDAHDGI 427 (673)
T ss_dssp CCSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBTTCCEEECCSCHHHHHHHHHHHHHHSSC
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCCCCCeEecCccHHHHHHHHHHHHhcCCC
Confidence 11346789999999999999999999999998776553 2 887 99999999999999999999999999 59
Q ss_pred eeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHH
Q 005820 466 KPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (676)
Q Consensus 466 ~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~a 544 (676)
+||+++|++|+.++++||+ ++|++++||++++++.|. +|+||+|||+.+|+++++++||++|++|+|++|+..++++|
T Consensus 428 ~P~~~~~~~F~~~~~~~ir-~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a 506 (673)
T 1r9j_A 428 IPFGGTFLNFIGYALGAVR-LAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQVIRPSDQTETSGAWAVA 506 (673)
T ss_dssp EEEEEEEGGGGGGGHHHHH-HHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHH
T ss_pred EEEEEehHHHHHHHHHHHH-HHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHH
Confidence 9999999999999999975 489999999999977776 89999999999999999999999999999999999999999
Q ss_pred HHhCCCCeEEEecCCCCccccCCCCCCCC-ccccCceeEeecC--CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 545 AAIDDRPSCFRYPRGNGIGVELPPGNKGI-PLEVGKGRILIEG--ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 545 l~~~~~P~~ir~~r~~~~~~~~p~~~~~~-~~~~gk~~vl~eG--~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
++..++|++||++|++.+. ++. ..+ .+++| ++++++| +|++||++|+++.+|++|+++|+++ |+++|||++
T Consensus 507 ~~~~~~Pv~i~~~r~~~~~--~~~--~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~ 580 (673)
T 1r9j_A 507 LSSIHTPTVLCLSRQNTEP--QSG--SSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMP 580 (673)
T ss_dssp HHCTTCCEEEECCSSEECC--CTT--CCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECS
T ss_pred HHhCCCeEEEEEcCCCCCC--CCC--cccccccCC-CEEEeeCCCCCEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCC
Confidence 9855899999999986432 222 122 46677 6899998 8999999999999999999999999 999999999
Q ss_pred ccCcCcHHH---HHHHhccCCEEEEEcCCCCCCHHHHH
Q 005820 622 FCKPLDHAL---IRSLAKSHEVLITVEEGSIGGFGSHV 656 (676)
Q Consensus 622 ~l~P~d~e~---i~~~~~~~~~vIvvEe~~~gG~gs~v 656 (676)
|++|||++. +.++++++..+|+||++..+||++++
T Consensus 581 sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~~g~~~~v 618 (673)
T 1r9j_A 581 CQELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWEKYS 618 (673)
T ss_dssp CHHHHHTSCHHHHHHHSCTTSCEEEECSSCCTTGGGTC
T ss_pred CCchhhcccHHHHHHHhccCCeEEEEeCCCccchHHhc
Confidence 999999984 88899888889999999889998765
No 14
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=3e-87 Score=788.89 Aligned_cols=589 Identities=20% Similarity=0.211 Sum_probs=441.7
Q ss_pred cccccccchHHHhhccCCCccccccccccccCCCCC-CCCcccCCCCcccccccCHHHHH-HHHHHHHHHHHHHhhh-c-
Q 005820 37 SHFSHKLDNHQIQLKKRPNGVCASLSERGEYHSQRP-PTPLLDTINYPIHMKNLSIRELK-QLADELRADVIFNVSK-T- 112 (676)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~i~~~~~~~~~~~~~l~-~la~~iR~~i~~~v~~-~- 112 (676)
||+++++..|+++.... +. ... .||||+||+.|.+.+.....||+ ++|++||+++++||++ +
T Consensus 33 ~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~l~~i~~~~~~~~p~d~~l~~~la~~iR~~~i~~v~~a~~ 98 (886)
T 2qtc_A 33 QYLIDQLLAEARKGGVN-------------VA-AGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASK 98 (886)
T ss_dssp -------------------------------------CCCSSCSSCGGGCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-------------CC-CCccCCchhhhCCCccccCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67777777655442221 11 123 67999999888887766666899 8999999999999986 7
Q ss_pred -----CCCCCCCccHHHHHHHHHhh-ccC-----CCCccccCcCchH---HHHHHHcCCh--HHhhhhHh---cCCCCCC
Q 005820 113 -----GGHLGSSLGVIELTVALHYV-FNA-----PKDRILWDVGHQT---YPHKILTGRR--DKMHTMRQ---TDGLSGF 173 (676)
Q Consensus 113 -----~GH~~sslg~~el~~aL~~~-~~~-----p~D~~i~s~gH~~---y~~~~l~G~~--~~l~~~r~---~~gl~g~ 173 (676)
+||+|+++|++|++++||+. |+. |+| ||||+||++ |+|++|+||. ++|.+||| .+|++||
T Consensus 99 ~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D-~V~~~GH~sp~~Ya~~~l~Gr~~~e~l~~fRq~~~~~gl~~~ 177 (886)
T 2qtc_A 99 KDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGD-LVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSY 177 (886)
T ss_dssp TCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCC-EEECCGGGHHHHHHHHHHTTSSCHHHHTTBTCCTTSSCBCSS
T ss_pred CCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCC-EEEEcchhHHHHHHHHHHhCCCCHHHHHhccCCCCCCCCCCC
Confidence 89999999999999999876 565 688 999999999 9999999995 89999999 5689999
Q ss_pred CCCCCCCC-cccCCCccchhhHHHHHHHHHchh-------cCCCCeEEEEEcCCcccccchHHHHHHhhhcC-CCEEEEE
Q 005820 174 TKRSESEY-DCFGTGHSSTSISAGLGMAVGRDL-------KGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLD-SDMIVIL 244 (676)
Q Consensus 174 ~~~~es~~-~~~g~G~~G~~ls~A~G~AlA~~~-------~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~-~~li~Iv 244 (676)
|++.++++ +.|++||+|+|+++|+|+|+|+|+ ++.+++||||+|||++++|++|||||+|++++ .||||||
T Consensus 178 p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vv 257 (886)
T 2qtc_A 178 PHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVI 257 (886)
T ss_dssp CCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEE
T ss_pred CCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEE
Confidence 99998887 999999999999999999999998 78899999999999999999999999999999 5799999
Q ss_pred ECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcc-cCCchHHHHH---------HHH---H----
Q 005820 245 NDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQ-IGGPMHELAA---------KVD---E---- 307 (676)
Q Consensus 245 ~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~-~g~~~~~~~~---------k~~---~---- 307 (676)
|||+| ++ ++++...+.++..|.++..+.. +...+. +|..+..+.+ .++ +
T Consensus 258 n~N~~-si-----~~~v~~~~~~~~~l~~~~~~~G--------~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q 323 (886)
T 2qtc_A 258 NCNLQ-RL-----DGPVTGNGKIINELEGIFEGAG--------WNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQ 323 (886)
T ss_dssp EECSB-CS-----SSBSCTTSCHHHHHHHHHHHTT--------CEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHH
T ss_pred ECCCc-cc-----CCCccccccccHHHHHHHHhCC--------CCEEEEecchhHHHHHccCCchHHHHHHHhccchhhh
Confidence 99995 54 3333322234455544433333 333322 2333322221 111 1
Q ss_pred --------HHhhccCCCc---cchhh---hcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCcchhhh
Q 005820 308 --------YARGMISGSG---STLFE---ELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGYPYAEK 373 (676)
Q Consensus 308 --------~~~~~~~~~~---~~lfe---a~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~~~ae~ 373 (676)
++|..+-... ..+.+ ..|++|+ ++||||+++|.++++++++. .++|++||++|+||+|+++++.
T Consensus 324 ~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l-~~dGhD~~~l~~a~~~A~~~-~~~PtlI~~~T~KG~G~~~~~e 401 (886)
T 2qtc_A 324 TFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL-NRGGHDPKKIYAAFKKAQET-KGKATVILAHTIKGYGMGDAAK 401 (886)
T ss_dssp HHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTC-CBGGGCHHHHHHHHHHHHHC-CSSCEEEEEECCTTTTCTTCC-
T ss_pred hhhhccchHHHHhhcccchHHHHHHhhcChhhHhhc-ccCCCCHHHHHHHHHHHHHc-CCCCEEEEEeeeeccccchhhc
Confidence 2222111110 11112 2388888 99999999999999999875 3699999999999999997777
Q ss_pred hhcccCCcc--------------------------cccCccc-----------------ccc------------cc----
Q 005820 374 AADKYHGVA--------------------------KFDPATG-----------------KQF------------KS---- 394 (676)
Q Consensus 374 ~~~~~H~~~--------------------------~fd~~~g-----------------~~~------------~~---- 394 (676)
++.++|++. +|+..+. +.. +.
T Consensus 402 ~~~~~H~~~~l~~~~~~~~r~~~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r~~~l~g~~p~~~~~~~~~~~~p~~~~~ 481 (886)
T 2qtc_A 402 GKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQDF 481 (886)
T ss_dssp ------------CHHHHHHHHHTTCSCCHHHHTTCCCCCCCTTSHHHHHHHHHHHHTTSCSSCCCCSCCSCCCCCCGGGG
T ss_pred CCccccCCCCCCHHHHHHHHHHcCCCCChhhhccccccCCccchHHHHHHHHHHHHhcccCcchhhhhhhcccCCchhhh
Confidence 778999874 4544331 100 00
Q ss_pred ------chhhhhHHHHHHHHHHHHHHcC---CCEEEEecccc---Cc------cc-----hhhhh-----------hhCC
Q 005820 395 ------SARTQSYTTYFAEALIAEAEVD---KDVVAIHAAMG---GG------TG-----LNLFL-----------RRFP 440 (676)
Q Consensus 395 ------~~~~~~~~~a~~~aL~~~~~~d---~~iv~i~aD~~---gs------~~-----l~~f~-----------~~~p 440 (676)
.....+++++|++.|.++++++ ++||++++|+. |+ ++ ...|. +.||
T Consensus 482 ~~~~~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~~ 561 (886)
T 2qtc_A 482 GALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEK 561 (886)
T ss_dssp HHHHSCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBTT
T ss_pred hhhccCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcCC
Confidence 1123578999999999999988 99999999943 32 22 24454 6889
Q ss_pred CceeeccccHHHH-H---HHHHHHHhcC--CeeEEeechhH-HHHHHHHHHHhhhcCCCCEEEEeecCCC-cCCCCCCCC
Q 005820 441 TRCFDVGIAEQHA-V---TFAAGLACEG--LKPFCAIYSSF-MQRAYDQVVHDVDLQKLPVRFAMDRAGL-VGADGPTHC 512 (676)
Q Consensus 441 ~R~id~GIaE~~~-v---~~A~GlA~~G--~~p~~~t~~~F-l~ra~dqi~~~~a~~~lpV~iv~~~~G~-~G~dG~tH~ 512 (676)
+||||+||+|++| + ++|+|+|++| ++||+.+|++| +||++||+++++++++.+|++..+..+. +|+||+|||
T Consensus 562 ~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l~~~~~~~~~g~dG~tHq 641 (886)
T 2qtc_A 562 GQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHE 641 (886)
T ss_dssp CCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEEEESCSTTTSTTTCTTTC
T ss_pred CceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEEEEecCcccCCCCCCccC
Confidence 9999999999995 5 6999999999 89999999999 8999999999999999999998764433 689999999
Q ss_pred ChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCC----eEEEecCCC--CccccCCCCCCCCccccCceeEeecC
Q 005820 513 GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRP----SCFRYPRGN--GIGVELPPGNKGIPLEVGKGRILIEG 586 (676)
Q Consensus 513 ~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P----~~ir~~r~~--~~~~~~p~~~~~~~~~~gk~~vl~eG 586 (676)
+.+|+++++++||++|++|+|+.|++.++++|++..++| ++++++|++ .....+|+. ....+ +++++++++|
T Consensus 642 ~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~~~~~~p~~~~~-~~~~~-~gga~vlr~g 719 (886)
T 2qtc_A 642 DGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEG-AEEGI-RKGIYKLETI 719 (886)
T ss_dssp CSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCSCCBCCCCCCTT-CHHHH-HHTCEEEEEE
T ss_pred CcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCccccCCCCCCcc-hhhhc-cCceEEEEec
Confidence 999999999999999999999999999999999865789 999999975 210123321 01233 7899999987
Q ss_pred ----CcEEEEEechhHHHHHHHHHHHHhC-CCcEEEEEccccCcCcHHH-------------------HHHHhccCCEEE
Q 005820 587 ----ERVALLGYGTAVQSCLAASALLESN-GLRLTVADARFCKPLDHAL-------------------IRSLAKSHEVLI 642 (676)
Q Consensus 587 ----~dv~Iva~Gs~v~~aleAa~~L~~~-Gi~v~VId~~~l~P~d~e~-------------------i~~~~~~~~~vI 642 (676)
+||+||++|+++.+|++|+++|+++ ||+++|||++|++|||+++ +.+.+.. ..+|
T Consensus 720 ~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~-~~vV 798 (886)
T 2qtc_A 720 EGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND-APAV 798 (886)
T ss_dssp CCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-SCEE
T ss_pred CCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-CCEE
Confidence 7999999999999999999999998 9999999999999999985 5555655 6688
Q ss_pred EEcCCCCCCHHHHHHHHH
Q 005820 643 TVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 643 vvEe~~~gG~gs~v~~~l 660 (676)
++|++.. |+++.+..++
T Consensus 799 a~ed~~~-g~~~~~~~~~ 815 (886)
T 2qtc_A 799 ASTDYMK-LFAEQVRTYV 815 (886)
T ss_dssp EECSSCT-HHHHTTGGGC
T ss_pred EEEeccc-chHHHHHHHc
Confidence 8898766 5666555444
No 15
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=3.5e-65 Score=590.73 Aligned_cols=510 Identities=15% Similarity=0.175 Sum_probs=390.9
Q ss_pred HHHHHHHHHHHHHHHHh--------------h-hcCCCCCCCccHHHHHHHHHhhc-cCCCCc-cccCcCchH---HHHH
Q 005820 93 ELKQLADELRADVIFNV--------------S-KTGGHLGSSLGVIELTVALHYVF-NAPKDR-ILWDVGHQT---YPHK 152 (676)
Q Consensus 93 ~l~~la~~iR~~i~~~v--------------~-~~~GH~~sslg~~el~~aL~~~~-~~p~D~-~i~s~gH~~---y~~~ 152 (676)
.+-..|+.|+---|+.. . +++||+|+++|++++.+.+..+. ...+|| ||+|+||.+ |+.+
T Consensus 47 ~~~raanyl~~~~iyl~~n~ll~r~L~~d~vk~a~sGH~G~~~g~a~iy~~~~~~~~~~~rDr~fvls~GHg~p~lYa~l 126 (845)
T 3ahc_A 47 KYWRVTNYMSIGQIYLRSNPLMKEPFTRDDVKHRLVGHWGTTPGLNFLLAHINRLIADHQQNTVFIMGPGHGGPAGTSQS 126 (845)
T ss_dssp HHHHHHHHHHHHHHHBSSCTTCCSSCCGGGBCSSCCSCCTTHHHHHHHHHHHHHHHHHHTBCBCCEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCcCCHHHhhhcCCCCCCCCHHHHHHHHHHHHhcccCCCceEEEECcCcHHHHHHHHH
Confidence 34455666665555433 3 36899999999999954443332 235899 799999999 9999
Q ss_pred HHcCC-----------hHHhhh-hHhc---CCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEc
Q 005820 153 ILTGR-----------RDKMHT-MRQT---DGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIG 217 (676)
Q Consensus 153 ~l~G~-----------~~~l~~-~r~~---~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viG 217 (676)
+|.|. .+.|++ |||+ ||++|||.+ +.++....+|.||+|++.|+|||+. +++.+|+|++|
T Consensus 127 ~l~G~~~~~~p~~s~d~e~Lk~lfrqfs~~gg~pgHp~~-~tpGve~~tG~LGqGls~AvG~A~~----~~~~~v~~~~G 201 (845)
T 3ahc_A 127 YVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSHFAP-ETPGSIHEGGELGYALSHAYGAVMN----NPSLFVPCIIG 201 (845)
T ss_dssp HHHTHHHHHCTTSCSSHHHHHHHHHHBTCTTSBCSSCCT-TSTTCSCCCSSTTCHHHHHHHHHTT----CTTCEEEEEEE
T ss_pred HHcCCCccccccccccHHHHHHHHHhccCCCCCCCCCCC-CCCCeecCCCCccchHhHHhhhhhc----CCCCeEEEEEC
Confidence 99997 355666 6766 458999975 6889999999999999999999954 56899999999
Q ss_pred CCcccccc---hHHHHHHhhhcC-CCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcc
Q 005820 218 DGAMTAGQ---AYEAMNNAGYLD-SDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQ 293 (676)
Q Consensus 218 DGa~~eG~---~~EAln~A~~~~-~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~ 293 (676)
||++++|+ .||+.++|..++ .||++|+++|+. ++ +|++. ++ .
T Consensus 202 DGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~-~i-----~g~t~----l~----~-------------------- 247 (845)
T 3ahc_A 202 DGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGY-KI-----ANPTI----LA----R-------------------- 247 (845)
T ss_dssp TTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSB-SS-----SSBCH----HH----H--------------------
T ss_pred CCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCC-cC-----CCCcc----cc----c--------------------
Confidence 99999999 999999998776 899999999993 33 33321 10 0
Q ss_pred cCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCC-C--CHHHHHHHHHH---------------hhhcCCCCc
Q 005820 294 IGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-H--NVDDLVAILEE---------------VKNTKTTGP 355 (676)
Q Consensus 294 ~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdG-h--d~~~l~~al~~---------------a~~~~~~~P 355 (676)
...+++.++ |++|||+++..||| | |+++|.+++++ +++...++|
T Consensus 248 --~~~e~l~~r----------------f~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP 309 (845)
T 3ahc_A 248 --ISDEELHDF----------------FRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRP 309 (845)
T ss_dssp --SCHHHHHHH----------------HHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred --cCcHHHHHH----------------HHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 012566666 99999998756899 9 99998877642 232123689
Q ss_pred --EEEEEEeccCC-------CcchhhhhhcccCCccc-------------------------ccC------------ccc
Q 005820 356 --VLIHVVTEKGR-------GYPYAEKAADKYHGVAK-------------------------FDP------------ATG 389 (676)
Q Consensus 356 --~lI~v~T~kg~-------G~~~ae~~~~~~H~~~~-------------------------fd~------------~~g 389 (676)
++|+++|.||+ |.+ +|+ ..++|+.++ |+. .+|
T Consensus 310 ~w~~Ii~rT~kG~tgp~~~~G~~-~eg-~~~~H~~pl~~~~~~~~~~~~l~~wl~~~~p~elF~~~~~~~~~~~~~~~~g 387 (845)
T 3ahc_A 310 FYPMLIFRTPKGWTCPKFIDGKK-TEG-SWRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFMPKG 387 (845)
T ss_dssp CEEEEEEECCTTTTSCSEETTEE-CTT-SGGGSSCSCTTTTTCHHHHHHHHHHHHHTCGGGTBCTTSCBCHHHHTTSCCG
T ss_pred CCeEEEEECcccCCCCCCCCCcc-cCC-CccccCCCCCCcccCHHHHHHHhhhccCCCchhccCCchHHHHHHHHhCcch
Confidence 99999999999 984 664 468999763 221 000
Q ss_pred cc-c-----------c-----cc--------------h-hhhhHHHHHHHHHHHHHHcCCC-EEEEeccccCccchhhhh
Q 005820 390 KQ-F-----------K-----SS--------------A-RTQSYTTYFAEALIAEAEVDKD-VVAIHAAMGGGTGLNLFL 436 (676)
Q Consensus 390 ~~-~-----------~-----~~--------------~-~~~~~~~a~~~aL~~~~~~d~~-iv~i~aD~~gs~~l~~f~ 436 (676)
.. + . +. . ....-+.+++++|.++++.+|+ ++++++|+.+|+.+..|.
T Consensus 388 ~~r~~~~P~~~~g~l~~~~~lp~~~~~~~~~~~~~~~g~~~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t~~f~ 467 (845)
T 3ahc_A 388 ELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATY 467 (845)
T ss_dssp GGSTTTCGGGGGGGTCCCCCCCCGGGGCCTHHHHHCTTEEEECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTCGGGG
T ss_pred HhHhhhCHHhcCCcCccccCCCChHhhhccccccccCCccchhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccHHHHH
Confidence 00 0 0 00 0 0113467889999999999999 999999999999998877
Q ss_pred hh---------C--C--------CceeeccccHHHHHHHHHHHHhcCCeeEEeechhHH---HHHHHH----HHHhhhcC
Q 005820 437 RR---------F--P--------TRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFM---QRAYDQ----VVHDVDLQ 490 (676)
Q Consensus 437 ~~---------~--p--------~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl---~ra~dq----i~~~~a~~ 490 (676)
+. + | +|||+ ||+|++|+++++|+|++|.+||+.+|++|+ .|+++| |+..++++
T Consensus 468 ~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~ 546 (845)
T 3ahc_A 468 EVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCEGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREI 546 (845)
T ss_dssp GTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHHHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccccccccCCcccccCCCCcEee-eecHHHHHHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhh
Confidence 77 6 7 89999 999999999999999999999999998887 799999 87663543
Q ss_pred ----CC-CEEEEeecCCC-cCCCCCCCCCh--hhHhHhh---cCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecCC
Q 005820 491 ----KL-PVRFAMDRAGL-VGADGPTHCGS--FDVTFMA---CLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRG 559 (676)
Q Consensus 491 ----~l-pV~iv~~~~G~-~G~dG~tH~~~--~d~a~~~---~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~ 559 (676)
.+ +|++++++.|+ +|+||||||+. +|+..++ .+||++|+.|+|++|+..+++.|++..+.|.+++++|+
T Consensus 547 ~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq 626 (845)
T 3ahc_A 547 PWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQ 626 (845)
T ss_dssp TTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCS
T ss_pred hhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 45 69999999998 89999999994 5554444 67999999999999999999999986555666666998
Q ss_pred CCccccCCCCCCCCccccCceeEe---ec--C--CcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEcccc---CcCcH
Q 005820 560 NGIGVELPPGNKGIPLEVGKGRIL---IE--G--ERVALLGYGTAV-QSCLAASALLESNGLRLTVADARFC---KPLDH 628 (676)
Q Consensus 560 ~~~~~~~p~~~~~~~~~~gk~~vl---~e--G--~dv~Iva~Gs~v-~~aleAa~~L~~~Gi~v~VId~~~l---~P~d~ 628 (676)
+.+.+. +.......+..|++.+. ++ | .||+||++|+++ .+|++|+++|+++||+++|||+.++ +|.|+
T Consensus 627 ~~p~~~-~~~~a~~~~~~G~~v~~~as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~ 705 (845)
T 3ahc_A 627 PAPTWV-TLDEARAELEAGAAEWKWASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSREN 705 (845)
T ss_dssp CEEECS-CHHHHHHHHHHSEEECTTTCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTT
T ss_pred CCCccC-CchhhhhhhcCCeEEEEeecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccc
Confidence 754431 11000013456665555 35 5 799999999775 5599999999999999999999999 66665
Q ss_pred HHHHHHhccCCEEEEEcCCC---CCCHHHHHHHHHHHc
Q 005820 629 ALIRSLAKSHEVLITVEEGS---IGGFGSHVVQFLAQD 663 (676)
Q Consensus 629 e~i~~~~~~~~~vIvvEe~~---~gG~gs~v~~~l~~~ 663 (676)
+.+....+.++.|+++|+++ .||+++.|++.+.++
T Consensus 706 ~~~~ls~~~~~~l~T~e~h~i~~~gGlgsaV~ell~~r 743 (845)
T 3ahc_A 706 NDEALTDEEFTELFTADKPVLFAYHSYAQDVRGLIYDR 743 (845)
T ss_dssp CTTSCCHHHHHHHHCSSSCEEEEESSCHHHHHHHTTTS
T ss_pred cccccCHHHhCcEeecCCcceeeecCcHHHHHHHHHhC
Confidence 54332344556788889886 499999999999887
No 16
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=4e-61 Score=568.58 Aligned_cols=523 Identities=15% Similarity=0.157 Sum_probs=374.7
Q ss_pred ccCHHHHHHHHH---HHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHhhcc-----CCCCccccCcCchHHHHHHH--cC
Q 005820 88 NLSIRELKQLAD---ELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--TG 156 (676)
Q Consensus 88 ~~~~~~l~~la~---~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~~~~-----~p~D~~i~s~gH~~y~~~~l--~G 156 (676)
+++.+++.++-+ .+|.+=-++..+ .+|-.-+..|..-+.+++.+.++ .++|.++ ...|+.+.+.+. .|
T Consensus 194 ~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~~~a~~~g~~D~v~-g~~hRg~~~~Lan~~G 272 (933)
T 2jgd_A 194 TFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVL-GMAHRGRLNVLVNVLG 272 (933)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHHHHHHTTTCCEEEE-ECCSTTHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHHHHHhhCCCCCEEe-cCCCcCHHHHHHHHhC
Confidence 456665554432 233322223332 33433345677767666655543 2577555 347999999988 77
Q ss_pred C--hHHhhhhHhcCCCCCCCCCCCCC------------C------cccCCCccchhhHHHHHHHHHchhcC-----CCCe
Q 005820 157 R--RDKMHTMRQTDGLSGFTKRSESE------------Y------DCFGTGHSSTSISAGLGMAVGRDLKG-----RKNN 211 (676)
Q Consensus 157 ~--~~~l~~~r~~~gl~g~~~~~es~------------~------~~~g~G~~G~~ls~A~G~AlA~~~~~-----~~~~ 211 (676)
. .+.|..|. |...|.....+.+ + ..+..||+|+++|+|+|+|+|+++++ .+..
T Consensus 273 ~~~~~i~~e~~--G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~ 350 (933)
T 2jgd_A 273 KKPQDLFDEFA--GKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVL 350 (933)
T ss_dssp CCHHHHHHHHH--TCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEE
T ss_pred CCHHHHHHHhc--CCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHHHHhhccccCCCCeE
Confidence 5 45566662 3222221111100 1 13578999999999999999999884 6889
Q ss_pred EEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCccCc-cCCCCCCCCcchhhHHHhhhhcChhhHHHHHH
Q 005820 212 VVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPT-ATLDGPIPPVGALSSALSRLQSNRPLRELREV 286 (676)
Q Consensus 212 vv~viGDGa~-~eG~~~EAln~A~~~~~~---li~Iv~dN~~~s~~t-~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~ 286 (676)
|||++|||++ ++|++|||||+|+.|++| +|+||+||+ +++.| +..+...
T Consensus 351 vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist~~~~~~~~------------------------- 404 (933)
T 2jgd_A 351 PITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTTSNPLDARS------------------------- 404 (933)
T ss_dssp EEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------------------------------
T ss_pred EEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccCCCHHhccc-------------------------
Confidence 9999999998 999999999999999999 999999998 46544 2211000
Q ss_pred hhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEecc
Q 005820 287 AKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEK 364 (676)
Q Consensus 287 ~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~k 364 (676)
+++...+++++||.++ .|||+|++++.++++++++. ...+|++|++.|++
T Consensus 405 ---------------------------~~~~~~~a~a~g~p~~-~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 405 ---------------------------TPYCTDIGKMVQAPIF-HVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp -----------------------------CGGGGGGTTTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred ---------------------------chhHHHHHHHcCCCEE-EECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 0112344889999987 78999999999999887632 24789999999999
Q ss_pred CCCcchhhh---------------------------------------------------------------hhcccCCc
Q 005820 365 GRGYPYAEK---------------------------------------------------------------AADKYHGV 381 (676)
Q Consensus 365 g~G~~~ae~---------------------------------------------------------------~~~~~H~~ 381 (676)
++|+...+. .+..||+.
T Consensus 457 ~~GH~~~D~~~yr~~~e~~~~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~ 536 (933)
T 2jgd_A 457 RHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPY 536 (933)
T ss_dssp CC-----------CCTTHHHHHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGG
T ss_pred ecCcCcccchhhCCHHHHHHHHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccc
Confidence 998754311 00124443
Q ss_pred ccc----cCccccccc----------c-----------------------chhhhhHHHHHHHHHHHHHHcCCCEEEEec
Q 005820 382 AKF----DPATGKQFK----------S-----------------------SARTQSYTTYFAEALIAEAEVDKDVVAIHA 424 (676)
Q Consensus 382 ~~f----d~~~g~~~~----------~-----------------------~~~~~~~~~a~~~aL~~~~~~d~~iv~i~a 424 (676)
.++ +..||.... . .....+|..+++.+|.+++++|++|+++++
T Consensus 537 ~~~~~~~~~~tg~~~~~l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~ 616 (933)
T 2jgd_A 537 LNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGE 616 (933)
T ss_dssp SSCCTTCCCCCCCCHHHHHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEET
T ss_pred cccccccCCCCCCCHHHHHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 332 223332100 0 001246888999999999999999999999
Q ss_pred cccCc------------------cchhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCe--eEEe-echhHHH---HH
Q 005820 425 AMGGG------------------TGLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLK--PFCA-IYSSFMQ---RA 479 (676)
Q Consensus 425 D~~gs------------------~~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~--p~~~-t~~~Fl~---ra 479 (676)
|++.+ +.++.|+++| |+||+|+||+|++++|+|+|+|+.|.+ |+++ +|++|++ |+
T Consensus 617 Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra 696 (933)
T 2jgd_A 617 DSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVV 696 (933)
T ss_dssp TTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHH
T ss_pred ccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHH
Confidence 99876 4578899999 999999999999999999999999988 9987 6999996 99
Q ss_pred HHHHHHhh-h--cCCCCEEEEeecCCCcCCCCCCCCChhhHhHh--hcCCCCEEEecCCHHHHHHHHHHHHHh-CCCCeE
Q 005820 480 YDQVVHDV-D--LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFM--ACLPNMVVMAPSDEAELFHMVATAAAI-DDRPSC 553 (676)
Q Consensus 480 ~dqi~~~~-a--~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~--~~iP~l~V~~Psd~~E~~~~~~~al~~-~~~P~~ 553 (676)
+||+++++ + .+++||++++++ |+.|. ||+||+..+..++ +++|||+|+.|+|+.|+++++++++.. .++|++
T Consensus 697 ~DQii~~~~ak~~~~~~vv~~l~~-G~~g~-G~~Hss~~~E~~l~~~~~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvi 774 (933)
T 2jgd_A 697 IDQFISSGEQKWGRMCGLVMLLPH-GYEGQ-GPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLV 774 (933)
T ss_dssp HHHTTTTHHHHHCCCCCCEEEEEC-CCSSS-CTTSSCCCHHHHHHTCCTTCCEEECCCSHHHHHHHHHHHHHSSCCCCEE
T ss_pred HHHHHHHHHHHHccCCCEEEEEeC-CCCCC-CcccccchHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHHHhcCCCcEE
Confidence 99999888 6 469999999998 54554 9999994444455 566999999999999999999999533 389999
Q ss_pred EEecCCCCcc-ccCCC----CCCCCccccCceeEeecCCcE--EEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcC
Q 005820 554 FRYPRGNGIG-VELPP----GNKGIPLEVGKGRILIEGERV--ALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPL 626 (676)
Q Consensus 554 ir~~r~~~~~-~~~p~----~~~~~~~~~gk~~vl~eG~dv--~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~ 626 (676)
|++||..+.. ..++. ....+.+++|++.+++ |+|| +|+++|.+...+++|++.|+++ +++|||+++|+||
T Consensus 775 i~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pl 851 (933)
T 2jgd_A 775 VMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCSGKVYYDLLEQRRKNNQH--DVAIVRIEQLYPF 851 (933)
T ss_dssp EEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEECTTHHHHHHHHHHHTTCC--SEEEEEECEEESC
T ss_pred EEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEchHHHHHHHHHHHHcccC--CeEEEEeeccCCC
Confidence 9999875311 11110 0023556789988777 8899 7777777777777777888655 8999999999999
Q ss_pred cHHHHHHHhccCC---EEEEEcCCC-CCCHHHHHHHHHHHcCCCCCcccc
Q 005820 627 DHALIRSLAKSHE---VLITVEEGS-IGGFGSHVVQFLAQDGLLDGTVKV 672 (676)
Q Consensus 627 d~e~i~~~~~~~~---~vIvvEe~~-~gG~gs~v~~~l~~~~~ld~~~~~ 672 (676)
|++.|.+++++++ .||++||+. .||+|++|++.+.+.+..+.|+++
T Consensus 852 d~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~~~~v~~ 901 (933)
T 2jgd_A 852 PHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRY 901 (933)
T ss_dssp CHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCTTCEEEE
T ss_pred CHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhcccCCceEE
Confidence 9999999998887 899999987 799999999999988753555543
No 17
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=8.9e-57 Score=528.91 Aligned_cols=524 Identities=16% Similarity=0.108 Sum_probs=365.3
Q ss_pred cccCHHHHHHHH---HHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHhhcc-----CCCCccccCcCchHHHHHHH--c
Q 005820 87 KNLSIRELKQLA---DELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--T 155 (676)
Q Consensus 87 ~~~~~~~l~~la---~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~~~~-----~p~D~~i~s~gH~~y~~~~l--~ 155 (676)
.+++.+++.++- ..+|..=-++..+ .+|-..+..|..-+.+++-..++ .++|.+ +...|+.+.+.+. .
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~~~g~~~~l~~~~~l~~~D~v-~gm~hRg~~~~Lan~~ 191 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVV-IAMPHRGRLNVLANIV 191 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEE-EECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEE-EeccccchHHHHHHHh
Confidence 356666655543 2333332223332 33334445676666666654443 366754 4347999999888 7
Q ss_pred CC--hHHhhhhHhcCCCCCC-C--CCCCCCC-------------------cccCCCccchhhHHHHHHHHHchhcC----
Q 005820 156 GR--RDKMHTMRQTDGLSGF-T--KRSESEY-------------------DCFGTGHSSTSISAGLGMAVGRDLKG---- 207 (676)
Q Consensus 156 G~--~~~l~~~r~~~gl~g~-~--~~~es~~-------------------~~~g~G~~G~~ls~A~G~AlA~~~~~---- 207 (676)
|. .+.|..| .|...|. . .++-+-| .....||+|+++|+|+|+|+|.++++
T Consensus 192 G~~~~~i~ae~--~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~ 269 (868)
T 2yic_A 192 GKPYSQIFSEF--EGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 269 (868)
T ss_dssp CCCHHHHTTTC--C------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCST
T ss_pred CCCHHHHHHHh--cCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCc
Confidence 74 3444444 1221111 0 0110000 01236899999999999999998864
Q ss_pred ------CCCeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcC
Q 005820 208 ------RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 277 (676)
Q Consensus 208 ------~~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~---li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~ 277 (676)
.+..+||++|||++ ++|.+|||||+|+.|++| +|+||+||+ +.+.|...+..+
T Consensus 270 ~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~-~g~st~~~~~~s---------------- 332 (868)
T 2yic_A 270 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ-IGFTTAPTDSRS---------------- 332 (868)
T ss_dssp TSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECS-CBTTBCHHHHCS----------------
T ss_pred ccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCC-cccccCcccccc----------------
Confidence 66799999999996 899999999999999987 999999997 444332110000
Q ss_pred hhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCc
Q 005820 278 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGP 355 (676)
Q Consensus 278 ~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P 355 (676)
.++...+++++||+++ .|||||++++.+++++|.+. ..++|
T Consensus 333 ------------------------------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~ar~~~~P 375 (868)
T 2yic_A 333 ------------------------------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKD 375 (868)
T ss_dssp ------------------------------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------------------------ccCHHHHHHhCCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 0112345899999988 78999999999999877531 24799
Q ss_pred EEEEEEeccCCCcchhhhhh-------cccCCcc-c-------------cc--------------------------C--
Q 005820 356 VLIHVVTEKGRGYPYAEKAA-------DKYHGVA-K-------------FD--------------------------P-- 386 (676)
Q Consensus 356 ~lI~v~T~kg~G~~~ae~~~-------~~~H~~~-~-------------fd--------------------------~-- 386 (676)
++|++.|+|++|++..+... ..|+... + ++ +
T Consensus 376 vlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~ 455 (868)
T 2yic_A 376 VVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHE 455 (868)
T ss_dssp EEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEEeecCCCcCcccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999998654210 1222210 0 00 0
Q ss_pred -----------------cccc----------c---cccc----hh-hh--hHHH----------HHHHH--HHHHHHcCC
Q 005820 387 -----------------ATGK----------Q---FKSS----AR-TQ--SYTT----------YFAEA--LIAEAEVDK 417 (676)
Q Consensus 387 -----------------~~g~----------~---~~~~----~~-~~--~~~~----------a~~~a--L~~~~~~d~ 417 (676)
.|+. . .++. .+ .. .-+. +++++ +..++++++
T Consensus 456 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~~~i~~a~~e~la~~~l~~~~~ 535 (868)
T 2yic_A 456 IEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGK 535 (868)
T ss_dssp ----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence 0000 0 0000 00 00 0011 22232 224588999
Q ss_pred CEEEEeccccCcc------------------chhhh------hh-hCCCceeeccccHHHHHHHHHHHHhcCC--eeEEe
Q 005820 418 DVVAIHAAMGGGT------------------GLNLF------LR-RFPTRCFDVGIAEQHAVTFAAGLACEGL--KPFCA 470 (676)
Q Consensus 418 ~iv~i~aD~~gs~------------------~l~~f------~~-~~p~R~id~GIaE~~~v~~A~GlA~~G~--~p~~~ 470 (676)
+|+++++|++.+| .++.| ++ .+|+||+|+||||++++|+|+|+|+.|. +|+++
T Consensus 536 ~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~e 615 (868)
T 2yic_A 536 LVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWE 615 (868)
T ss_dssp EEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEE
Confidence 9999999998752 25678 55 6899999999999999999999999994 55666
Q ss_pred e-chhHHHHH---HHHHHHhh---hcCCCCEEEEeecCCCcCCCCCCCCC--hhhHhHhhcCCCCEEEecCCHHHHHHHH
Q 005820 471 I-YSSFMQRA---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMV 541 (676)
Q Consensus 471 t-~~~Fl~ra---~dqi~~~~---a~~~lpV~iv~~~~G~~G~dG~tH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~~ 541 (676)
. |++|++++ +||+++++ .++++||+++++++| .| +||+|++ .+++..|+++|||+|+.|+|+.|+++++
T Consensus 616 aqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~-~G-~Gp~Hs~~~~E~~l~l~~~pnm~V~~Ps~p~~~~~lL 693 (868)
T 2yic_A 616 AQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLL 693 (868)
T ss_dssp CSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCCSHHHHHHHH
T ss_pred EehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCC-CC-CChhhcCCcHHHHHhcCCCCCCEEEEeCCHHHHHHHH
Confidence 4 99999777 99998886 356999999999877 67 8999998 7776667999999999999999999999
Q ss_pred HHHHHhC-CCCeEEEecCCCCcc-ccCCCC----CCCCccccCceeE---eecCCcE--EEEEechhHHHHHHHHHHHHh
Q 005820 542 ATAAAID-DRPSCFRYPRGNGIG-VELPPG----NKGIPLEVGKGRI---LIEGERV--ALLGYGTAVQSCLAASALLES 610 (676)
Q Consensus 542 ~~al~~~-~~P~~ir~~r~~~~~-~~~p~~----~~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~aleAa~~L~~ 610 (676)
++++..+ ++|++|++||..+.. ...+.. ...+..++|++.+ +++|+|| +|||+|.+ ..++++++ ++
T Consensus 694 r~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~~-~~~l~aa~--~~ 770 (868)
T 2yic_A 694 RRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AK 770 (868)
T ss_dssp HHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECSTH-HHHHHHHH--HH
T ss_pred HHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecHH-HHHHHHHH--Hh
Confidence 9988742 499999999874211 111110 0113337899887 7899999 99999998 67777766 56
Q ss_pred CC-CcEEEEEccccCcCcHHHHHHHhccCCE---EEEEcCCC-CCCHHHHHHHHHHHcCC-CCCcccc
Q 005820 611 NG-LRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQFLAQDGL-LDGTVKV 672 (676)
Q Consensus 611 ~G-i~v~VId~~~l~P~d~e~i~~~~~~~~~---vIvvEe~~-~gG~gs~v~~~l~~~~~-ld~~~~~ 672 (676)
+| ++++|||+++|+|||.++|.+++++++. ||++||+. .||+|++|++.+.+... |+.|+++
T Consensus 771 ~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~~~~l~~~v~~ 838 (868)
T 2yic_A 771 ENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKR 838 (868)
T ss_dssp HTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHCHHHHTTCEE
T ss_pred CCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHHhhhcCCCeEE
Confidence 68 9999999999999999999999988876 78888776 79999999999998431 4667654
No 18
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.6e-55 Score=530.01 Aligned_cols=524 Identities=15% Similarity=0.100 Sum_probs=365.6
Q ss_pred cccCHHHHHHHH---HHHHHHHHHHhhh-cCCCCCCCccHHHHHHHHHhhcc-----CCCCccccCcCchHHHHHHH--c
Q 005820 87 KNLSIRELKQLA---DELRADVIFNVSK-TGGHLGSSLGVIELTVALHYVFN-----APKDRILWDVGHQTYPHKIL--T 155 (676)
Q Consensus 87 ~~~~~~~l~~la---~~iR~~i~~~v~~-~~GH~~sslg~~el~~aL~~~~~-----~p~D~~i~s~gH~~y~~~~l--~ 155 (676)
.+++.+++.++- ..+|..=-++..+ .+|-..+..|..-+.+++...++ .++|.+ +...|+.+.+.+. .
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v-~gm~hRg~~~~La~~~ 436 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVV-IAMPHRGRLNVLANIV 436 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEE-EECCSTTHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEE-EeccccchHHHHHHHh
Confidence 356666655443 2233332222332 23334445777666666655543 466744 4347999999888 7
Q ss_pred CC--hHHhhhhHhcCCCCCC-C--CCCCCCC-------------------cccCCCccchhhHHHHHHHHHchhcC----
Q 005820 156 GR--RDKMHTMRQTDGLSGF-T--KRSESEY-------------------DCFGTGHSSTSISAGLGMAVGRDLKG---- 207 (676)
Q Consensus 156 G~--~~~l~~~r~~~gl~g~-~--~~~es~~-------------------~~~g~G~~G~~ls~A~G~AlA~~~~~---- 207 (676)
|. .+.|..|. |...|. . .++-+-| ....+||+|+++|+|+|+|+|.++++
T Consensus 437 G~~~~~i~ae~~--G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~ 514 (1113)
T 2xt6_A 437 GKPYSQIFSEFE--GNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 514 (1113)
T ss_dssp CCCHHHHSTTC---------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBST
T ss_pred CCCHHHHHHHhc--CCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccC
Confidence 74 34444442 221121 0 0110000 01246899999999999999999876
Q ss_pred ------CCCeEEEEEcCCcc-cccchHHHHHHhhhcCCC---EEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcC
Q 005820 208 ------RKNNVVAVIGDGAM-TAGQAYEAMNNAGYLDSD---MIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 277 (676)
Q Consensus 208 ------~~~~vv~viGDGa~-~eG~~~EAln~A~~~~~~---li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~ 277 (676)
.+..+||++|||++ ++|.+|||||+|+.|++| +|+||+||+ +++.|...+..+
T Consensus 515 ~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~-~gist~~~~~~s---------------- 577 (1113)
T 2xt6_A 515 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQ-IGFTTAPTDSRS---------------- 577 (1113)
T ss_dssp TSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECS-CBTTBCHHHHCS----------------
T ss_pred ccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCC-cccccCcccccc----------------
Confidence 57889999999995 899999999999999987 999999997 454332110000
Q ss_pred hhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCc
Q 005820 278 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGP 355 (676)
Q Consensus 278 ~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P 355 (676)
.++...++++|||+++ .|||||++++.+++++|.+. ..++|
T Consensus 578 ------------------------------------~~~~~~~a~a~G~p~~-~VdG~D~~av~~a~~~A~~~~r~~~~P 620 (1113)
T 2xt6_A 578 ------------------------------------SEYCTDVAKMIGAPIF-HVNGDDPEACAWVARLAVDFRQAFKKD 620 (1113)
T ss_dssp ------------------------------------SSSTTGGGGGGTCCEE-EEETTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred ------------------------------------ccCHHHHHHhcCCcEE-EEcCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 0111234899999988 78999999999998876531 24799
Q ss_pred EEEEEEeccCCCcchhhhhh-------cccCCcc-c-------------ccC--------------------ccc-cc--
Q 005820 356 VLIHVVTEKGRGYPYAEKAA-------DKYHGVA-K-------------FDP--------------------ATG-KQ-- 391 (676)
Q Consensus 356 ~lI~v~T~kg~G~~~ae~~~-------~~~H~~~-~-------------fd~--------------------~~g-~~-- 391 (676)
++|++.|+|++|++...... ..|+... + ++. +.. ++
T Consensus 621 vlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~ 700 (1113)
T 2xt6_A 621 VVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHE 700 (1113)
T ss_dssp EEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999998653210 0111100 0 000 000 00
Q ss_pred ----------cc------c------------------c-----hh-hhhH--HH------HHHHHHH------HHHHcCC
Q 005820 392 ----------FK------S------------------S-----AR-TQSY--TT------YFAEALI------AEAEVDK 417 (676)
Q Consensus 392 ----------~~------~------------------~-----~~-~~~~--~~------a~~~aL~------~~~~~d~ 417 (676)
.. + + .. ...+ +. ++..++. .++++++
T Consensus 701 ~~~~~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~r~~m~~~~~i~~a~~e~la~~~ll~~~~ 780 (1113)
T 2xt6_A 701 IEPSESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGRIDWAFAELLALGSLIAEGK 780 (1113)
T ss_dssp ----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhcCC
Confidence 00 0 0 00 0000 10 1122333 3489999
Q ss_pred CEEEEeccccCcc------------------chhhh------hh-hCCCceeeccccHHHHHHHHHHHHhcC--CeeEEe
Q 005820 418 DVVAIHAAMGGGT------------------GLNLF------LR-RFPTRCFDVGIAEQHAVTFAAGLACEG--LKPFCA 470 (676)
Q Consensus 418 ~iv~i~aD~~gs~------------------~l~~f------~~-~~p~R~id~GIaE~~~v~~A~GlA~~G--~~p~~~ 470 (676)
+|+++++|++.+| .++.| .+ .+|+|++|+||||++++|+|+|+|+.| .+|+++
T Consensus 781 ~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~E 860 (1113)
T 2xt6_A 781 LVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWE 860 (1113)
T ss_dssp EEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEE
Confidence 9999999998764 36788 66 679999999999999999999999999 556666
Q ss_pred e-chhHHHHH---HHHHHHhh---hcCCCCEEEEeecCCCcCCCCCCCCC--hhhHhHhhcCCCCEEEecCCHHHHHHHH
Q 005820 471 I-YSSFMQRA---YDQVVHDV---DLQKLPVRFAMDRAGLVGADGPTHCG--SFDVTFMACLPNMVVMAPSDEAELFHMV 541 (676)
Q Consensus 471 t-~~~Fl~ra---~dqi~~~~---a~~~lpV~iv~~~~G~~G~dG~tH~~--~~d~a~~~~iP~l~V~~Psd~~E~~~~~ 541 (676)
. |++|++++ +||+++++ .++++||+++++++| .| +||+|++ .+++..|+++|||+|+.|+|+.|+++++
T Consensus 861 aqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~-~G-~G~~Hs~~~~E~~l~l~~~pnm~V~~Ps~~~~~~~lL 938 (1113)
T 2xt6_A 861 AQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGH-EG-QGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLL 938 (1113)
T ss_dssp CSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCC-SS-SCTTSSCCCHHHHHHHCCTTSCEEECCSSHHHHHHHH
T ss_pred EEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCC-CC-CChhhhcccHHHHHhcCCCCCcEEEecCCHHHHHHHH
Confidence 5 99999776 99999886 367999999999877 67 8999999 4554445999999999999999999999
Q ss_pred HHHHHhC-CCCeEEEecCCCCcc-ccCCCC----CCCCccccCceeE---eecCCcE--EEEEechhHHHHHHHHHHHHh
Q 005820 542 ATAAAID-DRPSCFRYPRGNGIG-VELPPG----NKGIPLEVGKGRI---LIEGERV--ALLGYGTAVQSCLAASALLES 610 (676)
Q Consensus 542 ~~al~~~-~~P~~ir~~r~~~~~-~~~p~~----~~~~~~~~gk~~v---l~eG~dv--~Iva~Gs~v~~aleAa~~L~~ 610 (676)
++++..+ ++|++|++||..+.. ...+.. ...+..++|++.+ +++|+|| +|||+|.+ ..+++|++ ++
T Consensus 939 r~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~-~~~l~aa~--~~ 1015 (1113)
T 2xt6_A 939 RRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKI-YYELAARK--AK 1015 (1113)
T ss_dssp HHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECSTH-HHHHHHHH--HH
T ss_pred HHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECHH-HHHHHHHH--Hh
Confidence 9988742 489999999874211 111110 0123337899887 7899999 99999998 77777776 56
Q ss_pred CC-CcEEEEEccccCcCcHHHHHHHhccCCE---EEEEcCCC-CCCHHHHHHHHHHHcCC-CCCcccc
Q 005820 611 NG-LRLTVADARFCKPLDHALIRSLAKSHEV---LITVEEGS-IGGFGSHVVQFLAQDGL-LDGTVKV 672 (676)
Q Consensus 611 ~G-i~v~VId~~~l~P~d~e~i~~~~~~~~~---vIvvEe~~-~gG~gs~v~~~l~~~~~-ld~~~~~ 672 (676)
+| ++++|||+++|+|||++.|.+++++++. +|++||+. .||+|++|++.+.+... |+.|+++
T Consensus 1016 ~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~~~~l~~~~~~ 1083 (1113)
T 2xt6_A 1016 ENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEILPDHFTGLKR 1083 (1113)
T ss_dssp HTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHHSHHHHTTCEE
T ss_pred CCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHHhhhcCCCeEE
Confidence 68 9999999999999999999999998876 88888876 79999999999998431 4667654
No 19
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.2e-55 Score=477.86 Aligned_cols=302 Identities=25% Similarity=0.350 Sum_probs=222.7
Q ss_pred EeccCCCcch-hhhhhcccCCcccccCcccccccc-c--hhhhhHHHHHHHHHHHHHHcCCCEEEEeccccCcc----ch
Q 005820 361 VTEKGRGYPY-AEKAADKYHGVAKFDPATGKQFKS-S--ARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GL 432 (676)
Q Consensus 361 ~T~kg~G~~~-ae~~~~~~H~~~~fd~~~g~~~~~-~--~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~----~l 432 (676)
.|.||+||.| +|.+..+||...+| ++||+..+. . ....+|+++++++|.+++++|++|+++++|++.+. .+
T Consensus 10 ~t~kg~g~~~~a~~~~~~~h~~~pf-~~~g~~~~~~~~~m~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~ 88 (369)
T 1ik6_A 10 LVPRGSGMKETAAAKFERNHMDSPD-LGTDDDDKMVAGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVT 88 (369)
T ss_dssp -----------------------------------CCSCEEEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTT
T ss_pred CCCCCCCCCcchhhchhhhcccCCc-CCCCCcccccccccCcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhH
Confidence 6999999999 99999999999999 999974332 1 14568999999999999999999999999997322 36
Q ss_pred hhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-echhHHHHHHHHHHHhhhcC--------CCCEEEEeecCC
Q 005820 433 NLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQ--------KLPVRFAMDRAG 502 (676)
Q Consensus 433 ~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t~~~Fl~ra~dqi~~~~a~~--------~lpV~iv~~~~G 502 (676)
+.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|++|++|++|||++++|++ ++||+++++++|
T Consensus 89 ~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 89 EGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp TTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 7899999 9999999999999999999999999999998 59999999999999999977 999999999988
Q ss_pred CcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCcc--ccCCCCCCCCccccCce
Q 005820 503 LVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIG--VELPPGNKGIPLEVGKG 580 (676)
Q Consensus 503 ~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~~--~~~p~~~~~~~~~~gk~ 580 (676)
..| +|+||++.+ .++++++|||+|++|+|++|+++++++|++ .++|++||+||..... ..+|. ..+.+++|++
T Consensus 169 ~~g-~g~~hs~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~-~~~Pv~i~~p~~l~r~~~~~v~~--~~~~~~~G~~ 243 (369)
T 1ik6_A 169 GTR-GGLYHSNSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR-GDDPVVFLEPKILYRAPREEVPE--GDYVVEIGKA 243 (369)
T ss_dssp ------------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH-SSSCEEEEEEGGGSSCCCEEEEC--SSCCCCTTCC
T ss_pred CCC-CCccccccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh-CCCCEEEEEehhhhccCCCCcCC--CcccccCCce
Confidence 666 899999986 499999999999999999999999999998 7899999998764321 22332 2345789999
Q ss_pred eEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHH
Q 005820 581 RILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQF 659 (676)
Q Consensus 581 ~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~ 659 (676)
+++++|.|++||++|+++..|++|+++|+ | +++|||++|++|||++.+++++++++.+|++||+. .||||++|+++
T Consensus 244 ~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~ 320 (369)
T 1ik6_A 244 RVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQTLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRAL 320 (369)
T ss_dssp EEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCEEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHH
T ss_pred EEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeeecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHH
Confidence 99999999999999999999999999997 8 99999999999999999999988888899999997 69999999999
Q ss_pred HHHcCC--CCCccc
Q 005820 660 LAQDGL--LDGTVK 671 (676)
Q Consensus 660 l~~~~~--ld~~~~ 671 (676)
+.++++ |+.|++
T Consensus 321 l~~~~~~~l~~pv~ 334 (369)
T 1ik6_A 321 VAEKALDRLTAPVI 334 (369)
T ss_dssp HHHHSGGGCSSCCE
T ss_pred HHhhCccccCCCeE
Confidence 999885 566664
No 20
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=9.9e-51 Score=436.05 Aligned_cols=283 Identities=19% Similarity=0.292 Sum_probs=241.9
Q ss_pred ccCccccccccchhhhhHHHHHHHHHHHHHHcCCCEEEEeccccC-cc--chhhhhhhC-CCceeeccccHHHHHHHHHH
Q 005820 384 FDPATGKQFKSSARTQSYTTYFAEALIAEAEVDKDVVAIHAAMGG-GT--GLNLFLRRF-PTRCFDVGIAEQHAVTFAAG 459 (676)
Q Consensus 384 fd~~~g~~~~~~~~~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~g-s~--~l~~f~~~~-p~R~id~GIaE~~~v~~A~G 459 (676)
||+.++.+........+|+++++++|.+++++|++|+++++|++. ++ .++.|+++| |+||||+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 556555443223345789999999999999999999999999973 22 457899999 99999999999999999999
Q ss_pred HHhcCCeeEEe-echhHHHHHHHHHHHhhhcCCC---------CEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEE
Q 005820 460 LACEGLKPFCA-IYSSFMQRAYDQVVHDVDLQKL---------PVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVM 529 (676)
Q Consensus 460 lA~~G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~l---------pV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~ 529 (676)
+|++|+|||++ +|++|++|++|||++++|+++. ||+++++++| +.+|+|||+.+|+++++++|||+|+
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g--~~~G~th~~~~d~~~l~~iP~l~V~ 163 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGC--VGHGALYHSQSPEAFFAHCPGIKVV 163 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESC--CSSCGGGSSCCCHHHHHTSTTCEEE
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCC--CCCCcchhhHhHHHHHhcCCCcEEE
Confidence 99999999997 6999999999999999996554 9999999877 3689999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHhCCCCeEEEecCCCCc--cccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHH
Q 005820 530 APSDEAELFHMVATAAAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASAL 607 (676)
Q Consensus 530 ~Psd~~E~~~~~~~al~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~ 607 (676)
+|+|++|+++++++|++ .++|++||+++.... ...+|. +.+.+++|+++++++|.|++||++|++++.|++|+++
T Consensus 164 ~Psd~~e~~~~l~~a~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~ 240 (342)
T 2bfd_B 164 IPRSPFQAKGLLLSCIE-DKNPCIFFEPKILYRAAAEEVPI--EPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASM 240 (342)
T ss_dssp CCSSHHHHHHHHHHHHH-SSSCEEEEEEGGGTTSCCEEEES--SCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHh-cCCcEEEEecchhcCCCCCCCCC--cccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHH
Confidence 99999999999999997 589999988843211 111232 2356789999999999999999999999999999999
Q ss_pred HHhC-CCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccc
Q 005820 608 LESN-GLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 608 L~~~-Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
|+++ |++++|||+++++|||++.+++++++++.+|+|||+. .||||++|++++.++++ |+.|++
T Consensus 241 L~~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~ 308 (342)
T 2bfd_B 241 AKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPIS 308 (342)
T ss_dssp HHHHHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCE
T ss_pred HHhhcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeE
Confidence 9998 9999999999999999999999998888899999986 79999999999999874 566664
No 21
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=5.1e-50 Score=427.78 Aligned_cols=268 Identities=24% Similarity=0.320 Sum_probs=240.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeccccCcc----chhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-ec
Q 005820 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-IY 472 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~----~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t~ 472 (676)
.+|+++|+++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t~ 82 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQF 82 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCSS
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEecc
Confidence 47899999999999999999999999997522 357899999 9999999999999999999999999999998 69
Q ss_pred hhHHHHHHHHHHHhhhc--------CCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHH
Q 005820 473 SSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATA 544 (676)
Q Consensus 473 ~~Fl~ra~dqi~~~~a~--------~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~a 544 (676)
++|++|++|||++++|+ +++||+++.++ |..|.+|+||++ +|.++++++|||+|++|+|++|+++++++|
T Consensus 83 ~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 83 FGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPF-GGGVHTPELHSD-SLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp GGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEE-CSSSCCCTTSSC-CCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEec-cCCCCCCCcccc-cHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999997 89999999885 556778889988 667999999999999999999999999999
Q ss_pred HHhCCCCeEEEecCCCCc--cccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccc
Q 005820 545 AAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 545 l~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
++ +++|++|++|+.... ...+|. ..+.+++||++++++|+|++||++|++++.|++|++.|+++|++++|||+++
T Consensus 161 ~~-~~~Pv~i~~p~~l~r~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IR-DNDPVIFLEHLKLYRSFRQEVPE--GEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HH-SSSCEEEEEETTTSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HH-cCCCEEEEechHhcCCCCCCCCC--ccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 97 789999999986532 122332 2356789999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccc
Q 005820 623 CKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 623 l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
++|||++.+++++++++.+|++||+. .||||++|++++.++++ |+.|++
T Consensus 238 l~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~ 289 (324)
T 1w85_B 238 VQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVL 289 (324)
T ss_dssp EESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCE
T ss_pred ecCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeE
Confidence 99999999999998888899999996 79999999999999875 566654
No 22
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=5.9e-50 Score=429.53 Aligned_cols=270 Identities=23% Similarity=0.360 Sum_probs=241.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEeccccC--cc--chhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 005820 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGG--GT--GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 471 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~g--s~--~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t 471 (676)
+.+|+++++++|.+++++|++|+++++|++. ++ .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~ 93 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFM 93 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 4689999999999999999999999999983 32 367899999 9999999999999999999999999999999 6
Q ss_pred chhHHHHHHHHHHHhhh--------cCCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 472 YSSFMQRAYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a--------~~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
|++|++|++|||+++++ ++++||++++++ |.+|.||+||++..| ++++++|||+|++|+|++|+++++++
T Consensus 94 f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~~~e-a~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 94 TFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQCFA-AWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp SGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCCCCH-HHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhhHHH-HHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 99999999999999998 399999999997 678889999977777 89999999999999999999999999
Q ss_pred HHHhCCCCeEEEecCCCCc-cccC----CCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEE
Q 005820 544 AAAIDDRPSCFRYPRGNGI-GVEL----PPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVA 618 (676)
Q Consensus 544 al~~~~~P~~ir~~r~~~~-~~~~----p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VI 618 (676)
|++ .++|++||++|+... ...+ ++ ..+.+++||++++++|.|++||++|+++..|++|++.|+++|++++||
T Consensus 172 a~~-~~~Pv~i~~~~~~~~~~~~v~p~~~~--~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv 248 (341)
T 2ozl_B 172 AIR-DNNPVVVLENELMYGVPFEFPPEAQS--KDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVI 248 (341)
T ss_dssp HHH-SSSCEEEEECHHHHTCEEECCHHHHS--TTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHh-cCCCEEEEEChhhhcCCCCcCCccCC--ccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 988 589999999976311 1111 22 245678999999999999999999999999999999999999999999
Q ss_pred EccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHH-cCC--CCCcccc
Q 005820 619 DARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQ-DGL--LDGTVKV 672 (676)
Q Consensus 619 d~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~-~~~--ld~~~~~ 672 (676)
|+++++|||++.+++++++++.+|+|||+. .||||++|++++.+ +++ |+.|++.
T Consensus 249 ~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ 306 (341)
T 2ozl_B 249 NMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVR 306 (341)
T ss_dssp ECCEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEE
T ss_pred eeeeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEE
Confidence 999999999999999998888899999998 69999999999999 875 5666643
No 23
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=1.5e-49 Score=424.31 Aligned_cols=269 Identities=24% Similarity=0.323 Sum_probs=240.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEeccccCcc----chhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 005820 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 471 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~----~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t 471 (676)
..+|+++++++|.+++++|++|+++++|++.+. .+..|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 357999999999999999999999999997532 347899999 9999999999999999999999999999998 6
Q ss_pred chhHHHHHHHHHHHhhhc--------CCCCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 472 YSSFMQRAYDQVVHDVDL--------QKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a~--------~~lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
|++|++|++|||++++|+ +++||+++.++ |..|.+|++|++ +|.++++++|||+|++|+|++|+++++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-g~~~~~g~~hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 160 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPS-GGGVRGGHHHSQ-SPEAHFVHTAGLKVVAVSTPYDAKGLLKA 160 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEE-CSSSSCGGGSSC-CCHHHHHTSTTCEEEECCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcC-CCCCCCCCccch-hHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 999999999999999997 89999999885 556778888888 78899999999999999999999999999
Q ss_pred HHHhCCCCeEEEecCCCCc--cccCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 544 AAAIDDRPSCFRYPRGNGI--GVELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 544 al~~~~~P~~ir~~r~~~~--~~~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
|++ .++|++|++||.... ...+|+ ..+.+++||++++++|.|++||++|++++.|++|++.|+++|++++|||++
T Consensus 161 a~~-~~~Pv~i~~p~~l~~~~~~~~~~--~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~ 237 (324)
T 1umd_B 161 AIR-DEDPVVFLEPKRLYRSVKEEVPE--EDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLR 237 (324)
T ss_dssp HHH-CSSCEEEEEEGGGSSSCCEECCS--SCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHh-cCCCEEEEechHhcCCCCCCcCC--CCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 997 789999998876431 122332 235578999999999999999999999999999999999999999999999
Q ss_pred ccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccc
Q 005820 622 FCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 622 ~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
+++|||++.+++++++++.+|++||+. .||||++|++++.++++ |+.|++
T Consensus 238 ~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~ 290 (324)
T 1umd_B 238 TLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPI 290 (324)
T ss_dssp EEETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCE
T ss_pred eecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeE
Confidence 999999999999998888999999997 79999999999999874 566664
No 24
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=2.8e-48 Score=416.78 Aligned_cols=266 Identities=23% Similarity=0.323 Sum_probs=236.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCEEEEeccccCcc----chhhhhhhC-CCceeeccccHHHHHHHHHHHHhcCCeeEEe-e
Q 005820 398 TQSYTTYFAEALIAEAEVDKDVVAIHAAMGGGT----GLNLFLRRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCA-I 471 (676)
Q Consensus 398 ~~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~----~l~~f~~~~-p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~-t 471 (676)
..+|+++++++|.+++++|++|+++++|++.+. .++.|+++| |+||||+||+|++|+++|+|+|++|+|||++ +
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 357999999999999999999999999997432 368899999 9999999999999999999999999999998 6
Q ss_pred chhHHHHHHHHHHHhhhcCC--------CCEEEEeecCCCcCCCCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHH
Q 005820 472 YSSFMQRAYDQVVHDVDLQK--------LPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVAT 543 (676)
Q Consensus 472 ~~~Fl~ra~dqi~~~~a~~~--------lpV~iv~~~~G~~G~dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~ 543 (676)
|++|++|++|||++++|+++ +||+++++++| +.||+|||+.+|+++++++|||+|++|+|++|+++++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g--~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG--GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC--SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC--CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999998655 99999998877 689999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEec----CCCCc---cc-----------cCCCCCCCCccccCceeEeecCCcEEEEEechhHHHHHHHH
Q 005820 544 AAAIDDRPSCFRYP----RGNGI---GV-----------ELPPGNKGIPLEVGKGRILIEGERVALLGYGTAVQSCLAAS 605 (676)
Q Consensus 544 al~~~~~P~~ir~~----r~~~~---~~-----------~~p~~~~~~~~~~gk~~vl~eG~dv~Iva~Gs~v~~aleAa 605 (676)
|++ .++|++|++| |+..+ .. .+|. ..+.+++||++++++|.|++||++|++++.|++|+
T Consensus 162 A~~-~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa 238 (338)
T 1qs0_B 162 SIE-CDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPD--GYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA 238 (338)
T ss_dssp HHH-SSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEES--SCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHH
T ss_pred HHh-cCCcEEEEEchHhhcCcccccccCccchhhcccccccCC--CCcccccCceeEecCCCCEEEEEeCHHHHHHHHHH
Confidence 998 5899999877 44322 00 1222 23457789999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCC-CCCHHHHHHHHHHHcCC--CCCccc
Q 005820 606 ALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGS-IGGFGSHVVQFLAQDGL--LDGTVK 671 (676)
Q Consensus 606 ~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~-~gG~gs~v~~~l~~~~~--ld~~~~ 671 (676)
+. +|++++|||+++++|||++.+++++++++.+|++||+. .||||++|++++.++++ |+.|++
T Consensus 239 ~~---~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~ 304 (338)
T 1qs0_B 239 EE---SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIE 304 (338)
T ss_dssp HH---HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCE
T ss_pred HH---cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeE
Confidence 98 59999999999999999999999998888999999997 79999999999999875 456654
No 25
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.97 E-value=1.1e-29 Score=275.05 Aligned_cols=237 Identities=16% Similarity=0.109 Sum_probs=187.5
Q ss_pred ccccCHHHHHH---HHHHHHHHHHHHhh-hcCCCCCCC---ccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC-
Q 005820 86 MKNLSIRELKQ---LADELRADVIFNVS-KTGGHLGSS---LGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR- 157 (676)
Q Consensus 86 ~~~~~~~~l~~---la~~iR~~i~~~v~-~~~GH~~ss---lg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~- 157 (676)
.++++.+++.+ .+.++|.+..+++. .++||+|++ .|+..++++++..++.++|+||+ +|+.|+|++++|+
T Consensus 30 ~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD~i~~--s~r~~~~~~~~G~~ 107 (367)
T 1umd_A 30 PLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFP--YYRDHGLALALGIP 107 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTSEEEC--CTTTHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCcEEEe--CcHHHHHHHHcCCC
Confidence 35677777666 68999999999997 578998766 56667778888888766699998 8999999999998
Q ss_pred -hHHhhhhHhc------C-CCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHH
Q 005820 158 -RDKMHTMRQT------D-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA 229 (676)
Q Consensus 158 -~~~l~~~r~~------~-gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EA 229 (676)
.+.|.+|++. | +.++||...+ ......+|++|+++|.|+|+|+|.++.+++++|||++|||++++|++|||
T Consensus 108 ~~~~l~~~~g~~~g~~~G~~~~~h~~~~~-~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea 186 (367)
T 1umd_A 108 LKELLGQMLATKADPNKGRQMPEHPGSKA-LNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG 186 (367)
T ss_dssp HHHHHHHHHTBTTCTTTTCSCSSCCCBTT-TTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccc-cCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH
Confidence 4789999883 3 2567774322 23345889999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH
Q 005820 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (676)
Q Consensus 230 ln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (676)
||+|+.+++|+|+||+||+ +++.+... .
T Consensus 187 l~~A~~~~lpvi~vv~NN~-~gi~~~~~------------------------------------------~--------- 214 (367)
T 1umd_A 187 INFAAVQGAPAVFIAENNF-YAISVDYR------------------------------------------H--------- 214 (367)
T ss_dssp HHHHHHTTCSEEEEEEECS-EETTEEHH------------------------------------------H---------
T ss_pred HHHHHHhCcCEEEEEecCC-eeeccChh------------------------------------------h---------
Confidence 9999999999999999999 44422100 0
Q ss_pred hhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhh--cCCCCcEEEEEEeccCCCcchhhhhhcccCC
Q 005820 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN--TKTTGPVLIHVVTEKGRGYPYAEKAADKYHG 380 (676)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~--~~~~~P~lI~v~T~kg~G~~~ae~~~~~~H~ 380 (676)
..-.++...++++|||.++ .|||+|..++.++++++.+ ...++|++||+.|+|++|++.+. ++..|+.
T Consensus 215 -~~~~~d~~~~a~a~G~~~~-~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D-~~~~Yr~ 284 (367)
T 1umd_A 215 -QTHSPTIADKAHAFGIPGY-LVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSAD-DDSRYRP 284 (367)
T ss_dssp -HCSSSCSGGGGGGTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTC-CGGGTSC
T ss_pred -ccCCCCHHHHHHHcCCcEE-EeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCC-CccccCC
Confidence 0012345567999999998 7899999999888776543 13579999999999999998763 2344443
No 26
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.93 E-value=4.4e-25 Score=237.88 Aligned_cols=229 Identities=20% Similarity=0.213 Sum_probs=168.9
Q ss_pred CcccccccCHHHHHHHHHHH---HHHHHHHhh-----hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHH
Q 005820 82 YPIHMKNLSIRELKQLADEL---RADVIFNVS-----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKI 153 (676)
Q Consensus 82 ~~~~~~~~~~~~l~~la~~i---R~~i~~~v~-----~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~ 153 (676)
.|.+..+++.++|.++-+.+ |..=..+.. +..|+.+++.|+..+.+++...++ |.|.++. +|+.++|.+
T Consensus 24 ~~~~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~-~~D~i~~--~yR~~~~~~ 100 (365)
T 2ozl_A 24 GPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGIN-PTDHLIT--AYRAHGFTF 100 (365)
T ss_dssp CSCSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSC-TTSEEEC--CSCCHHHHH
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhC-CCCEEeh--HHHHHHHHH
Confidence 45566678888777765433 333222222 235889999999999999988884 7898887 799999999
Q ss_pred HcCC--hHHhhhhHhcCCCCCCCCCC-CCC----Cccc-CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccc
Q 005820 154 LTGR--RDKMHTMRQTDGLSGFTKRS-ESE----YDCF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQ 225 (676)
Q Consensus 154 l~G~--~~~l~~~r~~~gl~g~~~~~-es~----~~~~-g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~ 225 (676)
..|. .+.|..| .|...|.+++. .+. .+.+ +.|++|+++|+|+|+|+|.+++++++.|||++|||++++|+
T Consensus 101 ~~G~~~~~i~~e~--~g~~~g~~~g~gg~~H~~~~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~ 178 (365)
T 2ozl_A 101 TRGLSVREILAEL--TGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQ 178 (365)
T ss_dssp HTTCCHHHHHHHH--TTCTTSTTTTSSCTTCCCBTTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHH
T ss_pred hcCCCHHHHHHHH--cCCCCCCCCCCCCCCCcCccccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccH
Confidence 9997 3555555 23333333221 111 1233 55999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHH
Q 005820 226 AYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKV 305 (676)
Q Consensus 226 ~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~ 305 (676)
+||+||+|+.|++|+|+||+||++ ++.|... .
T Consensus 179 ~~Ealn~A~~~~lpvi~vv~NN~~-g~~t~~~--------~--------------------------------------- 210 (365)
T 2ozl_A 179 IFEAYNMAALWKLPCIFICENNRY-GMGTSVE--------R--------------------------------------- 210 (365)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSE-ETTEEHH--------H---------------------------------------
T ss_pred HHHHHHHHHHHCcCEEEEEECCCc-ccCCCcc--------c---------------------------------------
Confidence 999999999999999999999973 4322100 0
Q ss_pred HHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 005820 306 DEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 306 ~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 371 (676)
...+++... +++|+.++ .|||||++++.++++++.+. +.++|++||+.|++..|++.+
T Consensus 211 -----~~~~~~~~~--ra~g~p~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~ 270 (365)
T 2ozl_A 211 -----AAASTDYYK--RGDFIPGL-RVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMS 270 (365)
T ss_dssp -----HCSCCCGGG--TTTTSCEE-EEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTT
T ss_pred -----ccCCCCHHH--HhCCCCEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCC
Confidence 000112222 57899987 68999999999998877532 358999999999999999854
No 27
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.93 E-value=9.5e-25 Score=235.79 Aligned_cols=224 Identities=21% Similarity=0.235 Sum_probs=169.2
Q ss_pred ccccCHHHHHHHHHHH---HHHHHH---Hhh-hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC-
Q 005820 86 MKNLSIRELKQLADEL---RADVIF---NVS-KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR- 157 (676)
Q Consensus 86 ~~~~~~~~l~~la~~i---R~~i~~---~v~-~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~- 157 (676)
..+++.+++.++-+.+ |..=-. ... +.-|+++++.|...+.+++...++ |+|.++. .|+.++|.+..|.
T Consensus 38 ~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~-~~D~v~~--~~R~~~~~~~~G~~ 114 (368)
T 1w85_A 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALE-KEDFILP--GYRDVPQIIWHGLP 114 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCC-TTCEEEC--CSSCHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcC-CcCEEEe--cchhHHHHHhcCCC
Confidence 4567878777765433 433222 222 123888899999999999988884 8898776 4999999999996
Q ss_pred -hHHhhhhHhc--CCCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhh
Q 005820 158 -RDKMHTMRQT--DGLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAG 234 (676)
Q Consensus 158 -~~~l~~~r~~--~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~ 234 (676)
...|..+.-. |+ +.|+ ..+...+.|++|+++|+|+|+|+|.+++++++.|||++|||++++|++||+||+|+
T Consensus 115 ~~~~~~el~G~~~G~-~~h~----~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~ 189 (368)
T 1w85_A 115 LYQAFLFSRGHFHGN-QIPE----GVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAG 189 (368)
T ss_dssp HHHHHHHHHTCGGGG-CCCT----TCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC-CCCc----ccccCCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHH
Confidence 3445555321 22 1121 12334578999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccC
Q 005820 235 YLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMIS 314 (676)
Q Consensus 235 ~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~ 314 (676)
.|++|+++||+||+ +++.+..... .-.
T Consensus 190 ~~~lpvi~vv~NN~-~gi~~~~~~~----------------------------------------------------~~~ 216 (368)
T 1w85_A 190 AFKAPAIFVVQNNR-FAISTPVEKQ----------------------------------------------------TVA 216 (368)
T ss_dssp HTTCCEEEEEEECS-EETTEEGGGT----------------------------------------------------CSC
T ss_pred HHCcCEEEEEEcCC-ccceeccccc----------------------------------------------------cCC
Confidence 99999999999998 3443211100 001
Q ss_pred CCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcc-hh
Q 005820 315 GSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYP-YA 371 (676)
Q Consensus 315 ~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~-~a 371 (676)
++...++++|||+++ .|||||++++.++++++.+. ..++|++|++.|++..|++ .+
T Consensus 217 ~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~ 275 (368)
T 1w85_A 217 KTLAQKAVAAGIPGI-QVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275 (368)
T ss_dssp SCSGGGGGGTTCCEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSC
T ss_pred CCHHHHHHHCCCCEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCC
Confidence 334566999999998 78999999999999887642 2579999999999999998 54
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.92 E-value=6.4e-24 Score=231.72 Aligned_cols=227 Identities=16% Similarity=0.114 Sum_probs=165.4
Q ss_pred cccCHHHHHHHH-H--HHHHHHHHHhh-hcC---CCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--
Q 005820 87 KNLSIRELKQLA-D--ELRADVIFNVS-KTG---GHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR-- 157 (676)
Q Consensus 87 ~~~~~~~l~~la-~--~iR~~i~~~v~-~~~---GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~-- 157 (676)
.+++.+++.++- + .+|..=-.+.. ... ++..++.|...+.+++-..+ .++|.++. .|+.+++.+..|.
T Consensus 50 ~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al-~~~D~v~~--~yR~~~~~~~~G~~~ 126 (400)
T 2bfd_A 50 PHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL-DNTDLVFG--QAREAGVLMYRDYPL 126 (400)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS-CTTSEEEC--CSCCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc-CCCCEEEe--cCcCHHHHHHcCCCH
Confidence 456766655543 2 23332222222 122 45568999988888876666 57897775 8999999999997
Q ss_pred hHHhhhhHhc------C-CCCCCCCCCCCCCcccCCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHH
Q 005820 158 RDKMHTMRQT------D-GLSGFTKRSESEYDCFGTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAM 230 (676)
Q Consensus 158 ~~~l~~~r~~------~-gl~g~~~~~es~~~~~g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAl 230 (676)
.+.|.+|+.. | +.++|+...+. ....++|++|+++|+|+|+|+|.++++++++|||++|||++++|++||+|
T Consensus 127 ~~~l~e~~g~~~g~~~G~~~~~H~~~~~~-~~~~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal 205 (400)
T 2bfd_A 127 ELFMAQCYGNISDLGKGRQMPVHYGCKER-HFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGF 205 (400)
T ss_dssp HHHHHHHHTCTTCTTTTCSCSSCCCBTTT-TBCCCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCCcCCccccc-CccccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHH
Confidence 5667888764 2 34556543222 23347899999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHh
Q 005820 231 NNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYAR 310 (676)
Q Consensus 231 n~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~ 310 (676)
|+|+.|++|+|+||+||+ +++.+.....
T Consensus 206 ~~A~~~~lpvi~vv~NN~-~~i~~~~~~~--------------------------------------------------- 233 (400)
T 2bfd_A 206 NFAATLECPIIFFCRNNG-YAISTPTSEQ--------------------------------------------------- 233 (400)
T ss_dssp HHHHHTTCCEEEEEEECS-EETTEEGGGT---------------------------------------------------
T ss_pred HHHHHHCcCEEEEEECCc-eeeeeccccc---------------------------------------------------
Confidence 999999999999999997 3443321100
Q ss_pred hccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchh
Q 005820 311 GMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 311 ~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~a 371 (676)
+-.++...++++|||+++ .|||||+++|.++++++.+. ..++|++|++.|++-.|++..
T Consensus 234 -~~~~d~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~ 294 (400)
T 2bfd_A 234 -YRGDGIAARGPGYGIMSI-RVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTS 294 (400)
T ss_dssp -CSSSTTGGGTGGGTCEEE-EEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-
T ss_pred -CCCCCHHHHHHHcCCcEE-EEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCC
Confidence 001233456999999988 89999999999999877641 147999999999987777764
No 29
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.91 E-value=3.7e-23 Score=225.75 Aligned_cols=228 Identities=18% Similarity=0.133 Sum_probs=163.2
Q ss_pred cccCHHHHHHHHH---HHHHHHHHHhh----hcCCCCCCCccHHHHHHHHHhhccCCCCccccCcCchHHHHHHHcCC--
Q 005820 87 KNLSIRELKQLAD---ELRADVIFNVS----KTGGHLGSSLGVIELTVALHYVFNAPKDRILWDVGHQTYPHKILTGR-- 157 (676)
Q Consensus 87 ~~~~~~~l~~la~---~iR~~i~~~v~----~~~GH~~sslg~~el~~aL~~~~~~p~D~~i~s~gH~~y~~~~l~G~-- 157 (676)
.+++.+++.++-+ .+|..=-++.. +.-++..++.|...+.+++-..+ .++|.++. .|+.+++.+..|.
T Consensus 69 ~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al-~~~D~v~~--~yR~~~~~l~~g~~~ 145 (407)
T 1qs0_A 69 EDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALAL-NRTDMCFP--TYRQQSILMARDVSL 145 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHS-CTTSEEEC--CSSCHHHHHHTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhc-CCCCEEEe--cccchHHHHhcCCCH
Confidence 3567666655532 23332222222 12245568999998888887666 57898884 8999998888885
Q ss_pred hHHhhhhHhcCCCCCCCCCCC-------CCCccc-CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHH
Q 005820 158 RDKMHTMRQTDGLSGFTKRSE-------SEYDCF-GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA 229 (676)
Q Consensus 158 ~~~l~~~r~~~gl~g~~~~~e-------s~~~~~-g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EA 229 (676)
.+.|..|. |...+..++.. .....+ ++|++|+++|+|+|+|+|.++++++++|||++|||++++|.+||+
T Consensus 146 ~~i~~el~--g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea 223 (407)
T 1qs0_A 146 VEMICQLL--SNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA 223 (407)
T ss_dssp HHHHHHHH--TCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH
T ss_pred HHHHHHHh--CCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH
Confidence 35555553 21111111110 122333 689999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH
Q 005820 230 MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA 309 (676)
Q Consensus 230 ln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~ 309 (676)
||+|+.|++|+|+||+||++ ++.+.... . . +
T Consensus 224 l~~A~~~~lpvi~Vv~NN~~-gi~~~~~~--------~--------~------------------~-------------- 254 (407)
T 1qs0_A 224 LTFAHVYRAPVILNVVNNQW-AISTFQAI--------A--------G------------------G-------------- 254 (407)
T ss_dssp HHHHHHHTCCEEEEEEECSE-ETTEEGGG--------G--------T------------------T--------------
T ss_pred HHHHHHHCcCEEEEEECCCc-ceeecccc--------c--------c------------------C--------------
Confidence 99999999999999999973 43221100 0 0 0
Q ss_pred hhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhc--CCCCcEEEEEEeccCCCcchhh
Q 005820 310 RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNT--KTTGPVLIHVVTEKGRGYPYAE 372 (676)
Q Consensus 310 ~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~--~~~~P~lI~v~T~kg~G~~~ae 372 (676)
-.++...++++|||.++ .|||||++++.++++++.+. ..++|++|++.|+|++|++.++
T Consensus 255 ---~~~d~a~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~D 315 (407)
T 1qs0_A 255 ---ESTTFAGRGVGCGIASL-RVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSD 315 (407)
T ss_dssp ---TTCCSTHHHHHTTCEEE-EEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTC
T ss_pred ---CCCCHHHHHHHcCCeEE-EEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCC
Confidence 01223445899999988 78999999999998877642 2579999999999999999876
No 30
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.90 E-value=6.7e-24 Score=231.74 Aligned_cols=255 Identities=16% Similarity=0.143 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEEeccccCccch-hhhhh---hCCCceeeccccHHHHHHHHHHHHhcCCeeEEeechhH
Q 005820 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL-NLFLR---RFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSF 475 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l-~~f~~---~~p~R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~F 475 (676)
+-.+|+.+++.+. +.+++..-+-.. ++.+ +.|.+ ++..+|+.+. +|++++++|.|+|+.|.||++++.+++
T Consensus 24 ~GneAva~~~~~a---g~~~v~~yPgtP-~t~i~~~l~~~~~~~g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~~ts~~G 98 (395)
T 1yd7_A 24 QGDEAIARAAILA---GCRFYAGYPITP-ASEIFEAMALYMPLVDGVVIQME-DEIASIAAAIGASWAGAKAMTATSGPG 98 (395)
T ss_dssp EHHHHHHHHHHHH---TCCEEEECCBTT-TBCHHHHHHHHGGGGTCEEEECS-CHHHHHHHHHHHHHTTCCEEEEEETTH
T ss_pred EHHHHHHHHHHHc---CCCEEEEEECcc-hHHHHHHHHHhhhhcCcEEEEeC-CHHHHHHHHHHHHHhCCcEEEEeCchH
Confidence 4456666665553 456665544333 3322 34433 5667899987 999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEee-cCCC-cCCCCCC-CCChhhHhHhhcCC--CCEEEecCCHHHHHHHHHHHHH---h
Q 005820 476 MQRAYDQVVHDVDLQKLPVRFAMD-RAGL-VGADGPT-HCGSFDVTFMACLP--NMVVMAPSDEAELFHMVATAAA---I 547 (676)
Q Consensus 476 l~ra~dqi~~~~a~~~lpV~iv~~-~~G~-~G~dG~t-H~~~~d~a~~~~iP--~l~V~~Psd~~E~~~~~~~al~---~ 547 (676)
+.+++|||.+ ++..++|++++.. ++|. .|....+ |+...+. .+..+| ++.+++|++++|+.+++..|++ +
T Consensus 99 ~~~~~d~l~~-aa~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~-~~~~~g~~g~~vl~p~~~qea~~l~~~A~~lA~~ 176 (395)
T 1yd7_A 99 FSLMQENIGY-AVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQA-IWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEK 176 (395)
T ss_dssp HHHHTTTCC-----CCCCEEEEEEC---------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCCCEEEEEeeCCCCCCCCCcccchhHHHHH-HhccCCCcceEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 9999999865 5788999888874 4332 2212222 3334443 445555 9999999999999999999985 4
Q ss_pred CCCCeEEEecCCC---CccccCCC-----------------CCCCCcc--cc--------Cc------------------
Q 005820 548 DDRPSCFRYPRGN---GIGVELPP-----------------GNKGIPL--EV--------GK------------------ 579 (676)
Q Consensus 548 ~~~P~~ir~~r~~---~~~~~~p~-----------------~~~~~~~--~~--------gk------------------ 579 (676)
.+.||+++++... ...+++|+ .++.+.. +. |.
T Consensus 177 ~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~h~e~g~~~ 256 (395)
T 1yd7_A 177 YRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRTYVTGLTHDEKGRPR 256 (395)
T ss_dssp HTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC----------------------------------------------
T ss_pred HCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCceeEecccccccccCcc
Confidence 5689999987421 00000000 0001111 00 00
Q ss_pred ----------------------------eeEeecCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHH
Q 005820 580 ----------------------------GRILIEGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALI 631 (676)
Q Consensus 580 ----------------------------~~vl~eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i 631 (676)
.++..+|.|++||++|+++..+++|++.|+++|++++||++++++|||.+.|
T Consensus 257 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~vi~~r~~~Pld~~~i 336 (395)
T 1yd7_A 257 TVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGLLKIETIWPFDFELI 336 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEEEEeCeecCCCHHHH
Confidence 0122357899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 632 RSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 632 ~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
.+++++++.|+|+|++. ||+++.|.+.+..
T Consensus 337 ~~~~~~~~~vvvvEe~~-G~l~~~v~~~~~~ 366 (395)
T 1yd7_A 337 ERIAERVDKLYVPEMNL-GQLYHLIKEGANG 366 (395)
T ss_dssp -------------------------------
T ss_pred HHHHhcCCEEEEEeCCc-hHHHHHHHHHhcC
Confidence 99999999999999998 9999999988765
No 31
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.73 E-value=1.5e-16 Score=194.24 Aligned_cols=217 Identities=14% Similarity=0.097 Sum_probs=163.6
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC-cCCCCCCCCChhhHhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGADGPTHCGSFDVTF 519 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~-~G~dG~tH~~~~d~a~ 519 (676)
+.+....+|.++++++.|++++|.|++++|.+..+..+.+.+. .++..++|++++. .++|. +|. .++....|. +
T Consensus 55 ~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~lm~e~l~-~~ag~~~P~Vi~va~R~g~~~gl--si~~~hsd~-~ 130 (1231)
T 2c42_A 55 LTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLLLMIPNMY-KISGELLPGVFHVTARAIAAHAL--SIFGDHQDI-Y 130 (1231)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHHHHH-HHHHTTCCCEEEEEECCCCSSSB--CCSCCSHHH-H
T ss_pred eEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHHHHHHHHH-HHhCCCCCEEEEECCCCccCCCC--cCCCchhhH-H
Confidence 7999999999999999999999999999999998888888875 4466789988876 55553 221 233444454 3
Q ss_pred hhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC----CccccCCCC--------------------CCC
Q 005820 520 MACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN----GIGVELPPG--------------------NKG 572 (676)
Q Consensus 520 ~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~----~~~~~~p~~--------------------~~~ 572 (676)
....+|+.|++|++++|+++++..|++ +.+.|++++++.-. ...+++|+. ...
T Consensus 131 ~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~~~~~~~~~~~~p~ 210 (1231)
T 2c42_A 131 AARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQKALAEFRAKSMNPE 210 (1231)
T ss_dssp TTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHHHHHHHHHHSCCTT
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChhhhhhccccccCCC
Confidence 455799999999999999999999854 46789999987521 111222210 000
Q ss_pred CccccCc------------------------------------------e-eEeecCCcEEEEEechhHHHHHHHHHHHH
Q 005820 573 IPLEVGK------------------------------------------G-RILIEGERVALLGYGTAVQSCLAASALLE 609 (676)
Q Consensus 573 ~~~~~gk------------------------------------------~-~vl~eG~dv~Iva~Gs~v~~aleAa~~L~ 609 (676)
.+...|. . +.-.++.|++||++|+++..+++|++.|+
T Consensus 211 ~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs~~~~~~eAv~~L~ 290 (1231)
T 2c42_A 211 HPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGSSCETIEEVINHLA 290 (1231)
T ss_dssp SCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECSTHHHHHHHHHHHHH
T ss_pred CceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 1111111 1 12246789999999999999999999999
Q ss_pred hCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCC-----HHHHHHHHHHH
Q 005820 610 SNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGG-----FGSHVVQFLAQ 662 (676)
Q Consensus 610 ~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG-----~gs~v~~~l~~ 662 (676)
++|++|+||++++++|||.+.|.+++ ++.++|+|+|++..+| +...|...+..
T Consensus 291 ~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~ 349 (1231)
T 2c42_A 291 AKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVE 349 (1231)
T ss_dssp TTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHH
T ss_pred hcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhh
Confidence 99999999999999999999999988 7779999999985322 55566666654
No 32
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.61 E-value=8.7e-16 Score=176.60 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=137.4
Q ss_pred CCccHHHHHHHHHhhccCCCCccccCcC-chHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHH
Q 005820 118 SSLGVIELTVALHYVFNAPKDRILWDVG-HQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAG 196 (676)
Q Consensus 118 sslg~~el~~aL~~~~~~p~D~~i~s~g-H~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A 196 (676)
..+....++-.|...+ .++|.+++|+| |+.+++.++..+.. . ......+.|++|+++|+|
T Consensus 369 ~~l~~~~~~~~l~~~l-~~~~ivv~d~G~~~~~~~~~~~~~~~--------~----------~~~~~~~~g~~G~~l~~A 429 (603)
T 4feg_A 369 GPLQAYQVLRAVNKIA-EPDAIYSIDVGDINLNANRHLKLTPS--------N----------RHITSNLFATMGVGIPGA 429 (603)
T ss_dssp SBCCHHHHHHHHHHHC-CTTCEEEECSSHHHHHHHHHCCCCTT--------C----------EEECCCSSCCTTCHHHHH
T ss_pred CCcCHHHHHHHHHHhC-CCCCEEEECCchHHHHHHHhceeCCC--------C----------ceecCcccccccchhHHH
Confidence 3455555665565544 46788899999 66677765543211 0 011122568999999999
Q ss_pred HHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhc
Q 005820 197 LGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQS 276 (676)
Q Consensus 197 ~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~ 276 (676)
+|++++.+ +++|||++|||+++++ +++|++|+++++|+++||.||+.+.+
T Consensus 430 ~Gaala~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~------------------------ 479 (603)
T 4feg_A 430 IAAKLNYP----ERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF------------------------ 479 (603)
T ss_dssp HHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH------------------------
T ss_pred hhHHHhCC----CCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH------------------------
Confidence 99999865 8899999999999865 78899999999999988888873221
Q ss_pred ChhhHHHHHHhhhh-hc-ccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhh--hcCC
Q 005820 277 NRPLRELREVAKGV-TK-QIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVK--NTKT 352 (676)
Q Consensus 277 ~~~~~~~r~~~~~~-~~-~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~--~~~~ 352 (676)
++..-+.. .. ..+ ..+-.+++..++++||+.++.+ ++.++|.+++++++ + .
T Consensus 480 ------~~~~~~~~~~~~~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~~~--~ 534 (603)
T 4feg_A 480 ------IKDEQEDTNQNDFIG--------------VEFNDIDFSKIADGVHMQAFRV---NKIEQLPDVFEQAKAIA--Q 534 (603)
T ss_dssp ------HHHHHHHHCSSCCCS--------------SBCCCCCHHHHHHHTTCEEEEE---CBGGGHHHHHHHHHHHT--T
T ss_pred ------HHHHHHHhcCCCccc--------------CcCCCCCHHHHHHHCCCeEEEE---CCHHHHHHHHHHHHHhc--C
Confidence 00000000 00 000 0111234556699999999854 47788999999988 5 5
Q ss_pred CCcEEEEEEeccCCCcchhhhhhcccCCcccccCccccccccchhhhhHHHHHH
Q 005820 353 TGPVLIHVVTEKGRGYPYAEKAADKYHGVAKFDPATGKQFKSSARTQSYTTYFA 406 (676)
Q Consensus 353 ~~P~lI~v~T~kg~G~~~ae~~~~~~H~~~~fd~~~g~~~~~~~~~~~~~~a~~ 406 (676)
++|++||+.|.+++.+++ +...+..|+..++++.+.+....+.+...+++.+.
T Consensus 535 ~gP~lIev~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~ 587 (603)
T 4feg_A 535 HEPVLIDAVITGDRPLPA-EKLRLDSAMSSAADIEAFKQRYEAQDLQPLSTYLK 587 (603)
T ss_dssp TSCEEEEEECCCCCCCCT-TSCCCCTTTSCHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred CCcEEEEEEeCCCCCCCc-ccchhhhhhhhHHHHHHHHhhCCcccCCchHHHHH
Confidence 899999999987776664 44445667766555433222112222345555543
No 33
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.48 E-value=6.1e-14 Score=127.28 Aligned_cols=77 Identities=12% Similarity=0.269 Sum_probs=73.1
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
+|.|++||+||+++..|++|++.|+++|++++|+++++++|||.+.+.+++++++.|+|+|++..||+++.|...+.
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~~~~ 88 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKLYTG 88 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHHHHC
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999999888999999987653
No 34
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.46 E-value=1e-13 Score=158.10 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=120.8
Q ss_pred CccHHHHHHHHHhhccCCCCccccCcCchH-HHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHH
Q 005820 119 SLGVIELTVALHYVFNAPKDRILWDVGHQT-YPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGL 197 (676)
Q Consensus 119 slg~~el~~aL~~~~~~p~D~~i~s~gH~~-y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~ 197 (676)
.+....++..|...+ .+++.++.|.|+.. +++.++..+. |. +.....|.|++|+++|+|+
T Consensus 369 ~~~~~~~~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~~---------------~~---~~~~~~g~g~~G~~l~~Ai 429 (563)
T 2uz1_A 369 ALHPFHASQVIAKHV-DAGVTVVADGALTYLWLSEVMSRVK---------------PG---GFLCHGYLGSMGVGFGTAL 429 (563)
T ss_dssp SCCHHHHHHHHHTTC-STTEEEEECSSHHHHHHHHHHTTSC---------------CS---EEECCCTTCCTTTHHHHHH
T ss_pred CcCHHHHHHHHHHhC-CCCcEEEEcCchHHHHHHHhccccC---------------CC---eEECCCCCccccChHHHHH
Confidence 456666666666555 35677889999744 5766544311 11 1233346799999999999
Q ss_pred HHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcC
Q 005820 198 GMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSN 277 (676)
Q Consensus 198 G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~ 277 (676)
|+|+|.+ +++++|||++|||+++.+ +++|++|.++++|+++||.||+.+.+ .+.++...
T Consensus 430 Gaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~---------------~~~~~~~~-- 488 (563)
T 2uz1_A 430 GAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGA---------------TLHFQQLA-- 488 (563)
T ss_dssp HHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHH---------------HHHHHHHH--
T ss_pred HHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchH---------------HHHHHHHh--
Confidence 9999985 458999999999999965 67899999999998877777763221 00000000
Q ss_pred hhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEE
Q 005820 278 RPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVL 357 (676)
Q Consensus 278 ~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~l 357 (676)
| .-.+..+ .++-..++..++++||+.++.+ ++.++|.++++++.+ .++|++
T Consensus 489 --~--------~~~~~~~--------------~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~~a~~--~~gp~l 539 (563)
T 2uz1_A 489 --V--------GPNRVTG--------------TRLENGSYHGVAAAFGADGYHV---DSVESFSAALAQALA--HNRPAC 539 (563)
T ss_dssp --T--------CTTCCCS--------------CBCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHHHHHHH--SSSCEE
T ss_pred --c--------CCCcccC--------------CcCCCCCHHHHHHHcCCeEEEe---CCHHHHHHHHHHHHH--CCCCEE
Confidence 0 0000000 0111235566799999999855 689999999999886 579999
Q ss_pred EEEEeccCC
Q 005820 358 IHVVTEKGR 366 (676)
Q Consensus 358 I~v~T~kg~ 366 (676)
||+.|.+..
T Consensus 540 iev~~~~~~ 548 (563)
T 2uz1_A 540 INVAVALDP 548 (563)
T ss_dssp EEEECCSCC
T ss_pred EEEEecccc
Confidence 999998543
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.40 E-value=1.6e-12 Score=148.26 Aligned_cols=175 Identities=13% Similarity=0.169 Sum_probs=117.8
Q ss_pred ccHHHHHHHHHhhccCCCCccccCcC-chHHHHHHHcCChHHhhhhHhcCCCCCCCCCCCCCCcccCCCccchhhHHHHH
Q 005820 120 LGVIELTVALHYVFNAPKDRILWDVG-HQTYPHKILTGRRDKMHTMRQTDGLSGFTKRSESEYDCFGTGHSSTSISAGLG 198 (676)
Q Consensus 120 lg~~el~~aL~~~~~~p~D~~i~s~g-H~~y~~~~l~G~~~~l~~~r~~~gl~g~~~~~es~~~~~g~G~~G~~ls~A~G 198 (676)
+....++..|...+ .+++.++.|.| |+.+...++..+ .|. +.....|.|++|+++|+|+|
T Consensus 371 l~~~~v~~~l~~~l-~~~~iv~~d~G~~~~~~~~~~~~~---------------~~~---~~~~~~g~g~mG~~l~~AiG 431 (566)
T 1ozh_A 371 LHPLRIVRAMQDIV-NSDVTLTVDMGSFHIWIARYLYTF---------------RAR---QVMISNGQQTMGVALPWAIG 431 (566)
T ss_dssp BCHHHHHHHHHHHC-CTTEEEEECSSHHHHHHHHTGGGC---------------CCS---EEECCCTTCCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHhC-CCCCEEEEcCcHHHHHHHHhcccC---------------CCC---eEEeCCCcccccchHHHHHH
Confidence 66666777776665 34667788888 433444322210 011 11222367999999999999
Q ss_pred HHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcCh
Q 005820 199 MAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNR 278 (676)
Q Consensus 199 ~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~ 278 (676)
+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+ .+.+++.....
T Consensus 432 aala~~----~~~vv~i~GDG~~~~--~~~~L~ta~~~~l~~~ivv~nN~~~~~---------------~~~~~~~~~~~ 490 (566)
T 1ozh_A 432 AWLVNP----ERKVVSVSGDGGFLQ--SSMELETAVRLKANVLHLIWVDNGYNM---------------VAIQEEKKYQR 490 (566)
T ss_dssp HHHHST----TSEEEEEEEHHHHHH--HTTHHHHHHHHTCCEEEEEEECSBCHH---------------HHHHHHHHHSS
T ss_pred HHHhCC----CCCEEEEEcChHHhc--cHHHHHHHHHhCCCcEEEEEECCchhH---------------HHHHHHHhcCC
Confidence 999964 789999999999985 467899999999998888888863221 11011000000
Q ss_pred hhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEE
Q 005820 279 PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLI 358 (676)
Q Consensus 279 ~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI 358 (676)
. +..++-.+++..++++||+.++. + ++.++|.++|+++.+ .++|++|
T Consensus 491 ~----------------------------~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al~~a~~--~~gp~li 537 (566)
T 1ozh_A 491 L----------------------------SGVEFGPMDFKAYAESFGAKGFA-V--ESAEALEPTLRAAMD--VDGPAVV 537 (566)
T ss_dssp C----------------------------CSCBCCCCCHHHHHHTTTSEEEE-C--CSGGGHHHHHHHHHH--SSSCEEE
T ss_pred C----------------------------ccCcCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHHHHHHh--CCCCEEE
Confidence 0 00111224556679999999984 5 468899999999876 5799999
Q ss_pred EEEeccCCC
Q 005820 359 HVVTEKGRG 367 (676)
Q Consensus 359 ~v~T~kg~G 367 (676)
|+.|.+...
T Consensus 538 ev~~~~~~~ 546 (566)
T 1ozh_A 538 AIPVDYRDN 546 (566)
T ss_dssp EEEBCCTTH
T ss_pred EEEeCCCcC
Confidence 999998764
No 36
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.36 E-value=5.1e-13 Score=155.32 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=97.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|. ++++|||++|||+++. .+++|++|+++++|+++||.||+.+.+
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~--~~~eL~ta~~~~l~v~ivV~NN~~~g~------------ 572 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNM--TLTELSSAVQAGTPVKILILNNEEQGM------------ 572 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHH--HGGGHHHHHHHTCCCEEEEEECSSCHH------------
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhc--cHHHHHHHHHhCCCeEEEEEeCCCchh------------
Confidence 5689999999999999996 4899999999999985 567899999999998777777763221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
...+++.. |. . ...+ ..+-.+++..++++||+.++.+ ++.++|.++|
T Consensus 573 ---~~~~~~~~----~~------~---~~~~--------------~~~~~~d~~~la~a~G~~~~~v---~~~~el~~al 619 (677)
T 1t9b_A 573 ---VTQWQSLF----YE------H---RYSH--------------THQLNPDFIKLAEAMGLKGLRV---KKQEELDAKL 619 (677)
T ss_dssp ---HHHHHHHH----ST------T---CCCS--------------CCCCCCCHHHHHHHTTCEEEEE---CSHHHHHHHH
T ss_pred ---hhhhhhhh----cC------C---Cccc--------------CcCCCCCHHHHHHHcCCeEEEE---CCHHHHHHHH
Confidence 11010000 00 0 0000 0111245667799999999855 6899999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCcchh
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G~~~a 371 (676)
+++.+ .++|++||+.|.++....++
T Consensus 620 ~~a~~--~~gp~lIev~~~~~~~~~p~ 644 (677)
T 1t9b_A 620 KEFVS--TKGPVLLEVEVDKKVPVLPM 644 (677)
T ss_dssp HHHHH--CSSCEEEEEEBCSSCCCSSB
T ss_pred HHHHH--CCCcEEEEEEecCCcccCCc
Confidence 99886 57999999999998875443
No 37
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.35 E-value=6.7e-13 Score=152.17 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=96.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+++++|+++||.||+.+++
T Consensus 424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~------------ 485 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGM------------ 485 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHH------------
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchH------------
Confidence 56999999999999999975 7899999999999854 67999999999998777766653221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
...+++......+ ....++.+.. ......++..++++||+.++. + ++.++|.++|
T Consensus 486 ---~~~~~~~~~~~~~---------~~~~~~~p~~----------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 540 (590)
T 1ybh_A 486 ---VMQWEDRFYKANR---------AHTFLGDPAQ----------EDEIFPNMLLFAAACGIPAAR-V--TKKADLREAI 540 (590)
T ss_dssp ---HHHHHHHHSTTCC---------CSCBCSCGGG----------TTSCSSCHHHHHHHTTCCEEE-E--CBHHHHHHHH
T ss_pred ---HHHHHHHhcCCcc---------cccccccccc----------ccCCCCCHHHHHHHcCCeEEE-e--CCHHHHHHHH
Confidence 0001100000000 0000000000 000013456679999999984 4 5799999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCcch
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRGYPY 370 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G~~~ 370 (676)
+++.+ .++|++||+.|.++....+
T Consensus 541 ~~a~~--~~gp~liev~~~~~~~~~p 564 (590)
T 1ybh_A 541 QTMLD--TPGPYLLDVICPHQEHVLP 564 (590)
T ss_dssp HHHHH--SSSCEEEEEECCTTCCCCS
T ss_pred HHHHh--CCCCEEEEEEecCCcccCC
Confidence 99987 4799999999999887644
No 38
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.33 E-value=1.2e-12 Score=149.57 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=93.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
|.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+++++|+++||.||+.+++
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~------------ 495 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGL------------ 495 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHH------------
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchh------------
Confidence 67999999999999999964 7899999999999964 68999999999998777777763221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHH--hhccCCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYA--RGMISGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~--~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
.+.+++.. |. .. .. ..+-.+++..++++||+.++. + ++.++|.+
T Consensus 496 ---~~~~~~~~----~~------~~------------------~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~~l~~ 541 (573)
T 2iht_A 496 ---IELYQNIG----HH------RS------------------HDPAVKFGGVDFVALAEANGVDATR-A--TNREELLA 541 (573)
T ss_dssp ---HHHHHHHH----HS------SC------------------CGGGTBCCCCCHHHHHHHTTCEEEE-C--CSHHHHHH
T ss_pred ---hHHHHHHh----cC------CC------------------cCccccCCCCCHHHHHHHcCCeEEE-e--CCHHHHHH
Confidence 11111000 00 00 00 111124566779999999985 4 58899999
Q ss_pred HHHHhhhcCCCCcEEEEEEecc
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~k 364 (676)
+|+++.+ .++|++||+.|.+
T Consensus 542 al~~a~~--~~gp~liev~~~~ 561 (573)
T 2iht_A 542 ALRKGAE--LGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHT--SSSCEEEEEEBCC
T ss_pred HHHHHHh--CCCCEEEEEECCC
Confidence 9999986 5799999999998
No 39
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.32 E-value=1.1e-12 Score=148.48 Aligned_cols=126 Identities=23% Similarity=0.310 Sum_probs=91.2
Q ss_pred CccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcch
Q 005820 187 GHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGA 266 (676)
Q Consensus 187 G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ 266 (676)
|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +|+|++|+++++|+++||.||+.+.+
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~-------------- 460 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGA-------------- 460 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHH--------------
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchH--------------
Confidence 999999999999999964 7889999999999966 79999999999998888877763221
Q ss_pred hhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHH
Q 005820 267 LSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEE 346 (676)
Q Consensus 267 ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~ 346 (676)
.+.+++....+. ..+ .++-..++..++++||+.++ .++ +.++|.++|++
T Consensus 461 -~~~~~~~~~~~~-------------~~~--------------~~~~~~d~~~~a~a~G~~~~-~v~--~~~~l~~al~~ 509 (528)
T 1q6z_A 461 -LRWFAGVLEAEN-------------VPG--------------LDVPGIDFRALAKGYGVQAL-KAD--NLEQLKGSLQE 509 (528)
T ss_dssp -HHHHHHHHTCCS-------------CCS--------------CBCCCCCHHHHHHHHTCEEE-EES--SHHHHHHHHHH
T ss_pred -hHHHHHHhcCCC-------------ccc--------------CCCCCCCHHHHHHHcCCeEE-EeC--CHHHHHHHHHH
Confidence 000110000000 000 01112345667999999998 454 67899999999
Q ss_pred hhhcCCCCcEEEEEEeccC
Q 005820 347 VKNTKTTGPVLIHVVTEKG 365 (676)
Q Consensus 347 a~~~~~~~P~lI~v~T~kg 365 (676)
+++ .++|++||+.|.+.
T Consensus 510 a~~--~~gp~liev~~~~~ 526 (528)
T 1q6z_A 510 ALS--AKGPVLIEVSTVSP 526 (528)
T ss_dssp HHT--CSSCEEEEEEBCC-
T ss_pred HHH--CCCcEEEEEEecCC
Confidence 886 58999999999863
No 40
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.29 E-value=2.3e-12 Score=147.74 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=96.9
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
|.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|.++++|+++||.||+.+.+
T Consensus 422 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~------------ 483 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGA------------ 483 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH------------
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCccc------------
Confidence 67999999999999999964 7899999999999865 69999999999998888877763221
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.+.++..... ..+...+-.+++..++++||+.++. ++ +.++|.++|
T Consensus 484 ---~~~~~~~~~~----------------------------~~~~~~~~~~d~~~~a~a~G~~~~~-v~--~~~el~~al 529 (589)
T 2pgn_A 484 ---NWTLMNHQFG----------------------------QNNWTEFMNPDWVGIAKAFGAYGES-VR--ETGDIAGAL 529 (589)
T ss_dssp ---HHHHHHHHHS----------------------------SCCSCBCCCCCHHHHHHHHTCEEEE-CT--TTCCHHHHH
T ss_pred ---chHHHHhhcC----------------------------CCccccCCCCCHHHHHHHCCCeEEE-EC--CHHHHHHHH
Confidence 0000000000 0000111234566779999999984 54 567888899
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCcchh
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G~~~a 371 (676)
+++.+ .++|++||+.|.++..+.+.
T Consensus 530 ~~a~~--~~gp~liev~~~~~~~~~~~ 554 (589)
T 2pgn_A 530 QRAID--SGKPALIEIPVSKTQGLASD 554 (589)
T ss_dssp HHHHH--HCSCEEEEEECCSSSSTTTC
T ss_pred HHHHh--CCCCEEEEEEecCCCCcCcc
Confidence 88876 47999999999999877653
No 41
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.29 E-value=2.7e-12 Score=145.97 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=94.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+-+..+.
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~--~~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~------ 471 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSM--LMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMK------ 471 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHH--TGGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhc--cHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHH------
Confidence 56899999999999999975 789999999999984 578899999999998777777753221110000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
. .........+-.+++..++++||+.++.+ ++.++|.++|
T Consensus 472 ------------~-------------------------~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al 511 (549)
T 3eya_A 472 ------------A-------------------------GGYLTDGTELHDTNFARIAEACGITGIRV---EKASEVDEAL 511 (549)
T ss_dssp --------------------------------------------CCBCCCCCHHHHHHHTTSEEEEE---CSGGGHHHHH
T ss_pred ------------h-------------------------cCCCCcCCcCCCCCHHHHHHHcCCcEEEe---CCHHHHHHHH
Confidence 0 00001112222345667799999999855 6788999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCCCc
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGRGY 368 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~G~ 368 (676)
+++.+ .++|++|||.|.+....
T Consensus 512 ~~a~~--~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 512 QRAFS--IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp HHHHH--SSSCEEEEEEBCCCCSC
T ss_pred HHHHh--CCCCEEEEEEecccccc
Confidence 99887 47999999999886543
No 42
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.28 E-value=1.8e-12 Score=147.70 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=96.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|.+.++++++|||++|||+++. .+++|++|.++++|+++||.||+.+.+.... .+...
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~--~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~-- 485 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQL--TVQEISTMIRWGLKPYLFVLNNDGYTIQKLI-HGPKA-- 485 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC--
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhc--cHHHHHHHHHcCCCcEEEEEECCcchhhhhh-hCCCC--
Confidence 679999999999999999998888899999999999985 5788999999999988777777532221000 00000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCce---eeccCCCCCHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY---YIGPVDGHNVDDLV 341 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~---~~~~vdGhd~~~l~ 341 (676)
.+ .++-.+++..++++||+. ++. + ++.++|.
T Consensus 486 ------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~-v--~~~~el~ 519 (563)
T 2vk8_A 486 ------------------------------------------QY-NEIQGWDHLSLLPTFGAKDYETHR-V--ATTGEWD 519 (563)
T ss_dssp ------------------------------------------GG-GCCCCCCGGGHHHHTTCSSEEEEE-E--CBHHHHH
T ss_pred ------------------------------------------Cc-ccCCCCCHHHHHHHhCCCCCcEEE-e--cCHHHHH
Confidence 00 111234667789999998 663 4 4689999
Q ss_pred HHHH-HhhhcCCCCcEEEEEEeccCC
Q 005820 342 AILE-EVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 342 ~al~-~a~~~~~~~P~lI~v~T~kg~ 366 (676)
++++ ++.+. .++|++||+.|.+..
T Consensus 520 ~al~~~a~~~-~~~p~liev~~~~~~ 544 (563)
T 2vk8_A 520 KLTQDKSFND-NSKIRMIEVMLPVFD 544 (563)
T ss_dssp HHHTCTTTTS-CSSEEEEEEECCTTC
T ss_pred HHHHHHHHhC-CCCcEEEEEEeCccc
Confidence 9998 77652 347999999998654
No 43
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.27 E-value=5.1e-12 Score=145.57 Aligned_cols=138 Identities=22% Similarity=0.219 Sum_probs=92.8
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+++++|+++||.||+.+++.
T Consensus 440 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~----------- 502 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLI----------- 502 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHH-----------
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHH-----------
Confidence 56999999999999999974 7899999999999954 689999999999987777777632221
Q ss_pred chhhHHHhhhhcCh-----hhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHH
Q 005820 265 GALSSALSRLQSNR-----PLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDD 339 (676)
Q Consensus 265 g~ls~~l~~~~~~~-----~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~ 339 (676)
..+++..... .|. +..... ...-..++..++++||+.++.+ ++.++
T Consensus 503 ----~~~~~~~~~~~~~~~~~~-------------~~~~~~---------~~~~~~d~~~~a~a~G~~~~~v---~~~~e 553 (616)
T 2pan_A 503 ----RQSQRAFDMDYCVQLAFE-------------NINSSE---------VNGYGVDHVKVAEGLGCKAIRV---FKPED 553 (616)
T ss_dssp ----HHHGGGGTCCCSCBCCCC-------------CTTCGG---------GTTCCCCHHHHHHHTTCEEEEE---CSGGG
T ss_pred ----HHHHHHhcCCcccccccc-------------cccccc---------CCCCCCCHHHHHHHcCCeEEEE---CCHHH
Confidence 0011100000 000 000000 0000134456699999999854 46888
Q ss_pred HHHHHHHhhhc--CCCCcEEEEEEeccCCCc
Q 005820 340 LVAILEEVKNT--KTTGPVLIHVVTEKGRGY 368 (676)
Q Consensus 340 l~~al~~a~~~--~~~~P~lI~v~T~kg~G~ 368 (676)
|.++|+++.+. ..++|++||+.|.++.-.
T Consensus 554 l~~al~~a~~~~~~~~gp~lIev~~~~~~~~ 584 (616)
T 2pan_A 554 IAPAFEQAKALMAQYRVPVVVEVILERVTNI 584 (616)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEEEBCSCCCC
T ss_pred HHHHHHHHHhhcccCCCcEEEEEEecccccC
Confidence 88888887640 027899999999998743
No 44
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.27 E-value=3.1e-12 Score=145.44 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=93.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|++|+++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|.++++|+++||.||+.+.+.... .+...
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~--~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~-- 476 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQ--LTIQELGSMLRDKQHPIILVLNNEGYTVERAI-HGAEQ-- 476 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHH--HHTTHHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC--
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHH--hHHHHHHHHHHhCCCCEEEEEECCCCeEEEee-ccCCC--
Confidence 67999999999999999965 78999999999998 56788999999998977777777532221000 00000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCc----eeeccCCCCCHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL----YYIGPVDGHNVDDL 340 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~----~~~~~vdGhd~~~l 340 (676)
. + .++-..++..++++||+ .++. + ++.++|
T Consensus 477 --------------~----------------------------~-~~~~~~d~~~~a~a~G~~~~~~~~~-v--~~~~~l 510 (552)
T 1ovm_A 477 --------------R----------------------------Y-NDIALWNWTHIPQALSLDPQSECWR-V--SEAEQL 510 (552)
T ss_dssp --------------G----------------------------G-GCCCCCCGGGSTTTSCSSCCEEEEE-E--CBHHHH
T ss_pred --------------C----------------------------c-ccCCCCCHHHHHHHhCCCcCCCEEE-e--CCHHHH
Confidence 0 0 11123466778999999 7764 3 578999
Q ss_pred HHHHHHhhhcCCCCcEEEEEEeccCC
Q 005820 341 VAILEEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 341 ~~al~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
.++++++.+ .++|++||+.|.+..
T Consensus 511 ~~al~~a~~--~~gp~liev~~~~~~ 534 (552)
T 1ovm_A 511 ADVLEKVAH--HERLSLIEVMLPKAD 534 (552)
T ss_dssp HHHHHHHTT--CSSEEEEEEECCTTC
T ss_pred HHHHHHHHh--CCCCEEEEEEcCccc
Confidence 999998876 579999999999754
No 45
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.26 E-value=7.1e-12 Score=143.66 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++.+ +++|++|+++++|+++||.||+.+.+....+...
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~---- 480 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDT---- 480 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSS----
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHh----
Confidence 67999999999999999964 7899999999999965 6899999999999888887775333321111000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.|. ..+ .++-.+++..++++||+.++. + ++.++|.++|
T Consensus 481 --------------~~~-----------~~~--------------~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 518 (590)
T 1v5e_A 481 --------------NKN-----------LFG--------------VDFTDVDYAKIAEAQGAKGFT-V--SRIEDMDRVM 518 (590)
T ss_dssp --------------CCS-----------CCC--------------CCCCCCCHHHHHHHTTSEEEE-E--CBHHHHHHHH
T ss_pred --------------cCC-----------Ccc--------------ccCCCCCHHHHHHHcCCEEEE-E--CCHHHHHHHH
Confidence 000 000 000113445569999999985 4 4789999999
Q ss_pred HHhhhc-CCCCcEEEEEEeccCC
Q 005820 345 EEVKNT-KTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~-~~~~P~lI~v~T~kg~ 366 (676)
+++.+. ..++|++||+.|.++.
T Consensus 519 ~~a~~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 519 AEAVAANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHHHHTTCCEEEEEECCSCC
T ss_pred HHHHHhcCCCCCEEEEEEecccc
Confidence 988752 0178999999999876
No 46
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.25 E-value=5.3e-12 Score=144.03 Aligned_cols=126 Identities=19% Similarity=0.291 Sum_probs=93.9
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|+++++|+++||.||+.+++.....
T Consensus 407 ~~g~mG~~l~~A~G~ala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~------- 473 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGSQ----DRQHVVMVGDGSFQL--TAQEVAQMVRYELPVIIFLINNRGYVIEIAIH------- 473 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS-------
T ss_pred cccchhhHHHHHHHHHHhCC----CCcEEEEEcchHHHh--hHHHHHHHHHhCCCcEEEEEECCcceEEEeec-------
Confidence 57899999999999999964 789999999999985 56789999999999777776665323211000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCc-----eeeccCCCCCHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNVDD 339 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~-----~~~~~vdGhd~~~ 339 (676)
...| .+.-..++..++++||+ .++.+ ++.++
T Consensus 474 ------------~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~e 509 (566)
T 2vbi_A 474 ------------DGPY-----------------------------NYIKNWDYAGLMEVFNAGEGHGLGLKA---TTPKE 509 (566)
T ss_dssp ------------CCGG-----------------------------GCCCCCCTTTHHHHHHTTTCCCEEEEE---CSHHH
T ss_pred ------------cCCc-----------------------------cCCCCCCHHHHHHHcCCCCCCccEEEe---CCHHH
Confidence 0000 01112456777999999 88854 57999
Q ss_pred HHHHHHHhhhcCCCCcEEEEEEeccCCCc
Q 005820 340 LVAILEEVKNTKTTGPVLIHVVTEKGRGY 368 (676)
Q Consensus 340 l~~al~~a~~~~~~~P~lI~v~T~kg~G~ 368 (676)
|.++|+++.+. .++|++||+.|.+..-.
T Consensus 510 l~~al~~a~~~-~~gp~liev~~~~~~~~ 537 (566)
T 2vbi_A 510 LTEAIARAKAN-TRGPTLIECQIDRTDCT 537 (566)
T ss_dssp HHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred HHHHHHHHHhc-CCCcEEEEEEeCcccCc
Confidence 99999998862 27999999999987643
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.22 E-value=7.6e-12 Score=142.82 Aligned_cols=126 Identities=18% Similarity=0.241 Sum_probs=92.1
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+.... .+...
T Consensus 423 ~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~--~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~-~~~~~-- 493 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQL--TVQELGLSIREKLNPICFIINNDGYTVEREI-HGPTQ-- 493 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEESSSCHHHHHH-SCTTC--
T ss_pred cchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhc--CHHHHHHHHHcCCCCEEEEEECCchHHHHHH-hccCC--
Confidence 67999999999999999964 789999999999985 5678999999999987777777532210000 00000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCce-----eeccCCCCCHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLY-----YIGPVDGHNVDD 339 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~-----~~~~vdGhd~~~ 339 (676)
.+ .++-..++..++++||+. ++.+ ++.++
T Consensus 494 ------------------------------------------~~-~~~~~~d~~~~a~a~G~~~~~~~~~~v---~~~~e 527 (570)
T 2vbf_A 494 ------------------------------------------SY-NDIPMWNYSKLPETFGATEDRVVSKIV---RTENE 527 (570)
T ss_dssp ------------------------------------------GG-GCCCCCCGGGHHHHTTCCTTTEEEEEE---CBHHH
T ss_pred ------------------------------------------Cc-cCCCCCCHHHHHHHcCCCcCCcceEEe---cCHHH
Confidence 00 112234667789999997 6644 57999
Q ss_pred HHHHHHHh-hhcCCCCcEEEEEEeccCCC
Q 005820 340 LVAILEEV-KNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 340 l~~al~~a-~~~~~~~P~lI~v~T~kg~G 367 (676)
|.++++++ .+ .++|++||+.|.+..-
T Consensus 528 l~~al~~a~~~--~~~p~liev~~~~~~~ 554 (570)
T 2vbf_A 528 FVSVMKEAQAD--VNRMYWIELVLEKEDA 554 (570)
T ss_dssp HHHHHHHHHHC--TTSEEEEEEECCTTCC
T ss_pred HHHHHHHHHhc--CCCcEEEEEEcCcccc
Confidence 99999984 44 5789999999987653
No 48
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.21 E-value=1.2e-11 Score=141.14 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=92.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++. .+++|++|.++++|+++||.||+.+.+.....
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~--~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~------- 477 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQL--TAQEVAQMVRLKLPVIIFLINNYGYTIEVMIH------- 477 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHH--HGGGHHHHHHTTCCCEEEEEECSSCHHHHTTS-------
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhc--cHHHHHHHHHcCCCcEEEEEECCcceEeeeec-------
Confidence 56899999999999999964 889999999999985 57889999999999877776665323211100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCc---------eeeccCCCC
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL---------YYIGPVDGH 335 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~---------~~~~~vdGh 335 (676)
...|. ++-..++..++++||+ .++. + +
T Consensus 478 ------------~~~~~-----------------------------~~~~~d~~~~a~a~G~~~~~~~~~~~~~~-v--~ 513 (568)
T 2wvg_A 478 ------------DGPYN-----------------------------NIKNWDYAGLMEVFNGNGGYDSGAGKGLK-A--K 513 (568)
T ss_dssp ------------CCGGG-----------------------------CCCCCCHHHHHHHHHCTTSSSCCCCEEEE-E--S
T ss_pred ------------cCCCc-----------------------------CCCCCCHHHHHHHhCCCcccccCCcceEE-e--C
Confidence 00010 0111244556899999 7774 4 5
Q ss_pred CHHHHHHHHHHhhhcCCCCcEEEEEEeccCCCc
Q 005820 336 NVDDLVAILEEVKNTKTTGPVLIHVVTEKGRGY 368 (676)
Q Consensus 336 d~~~l~~al~~a~~~~~~~P~lI~v~T~kg~G~ 368 (676)
+.++|.++++++.+. .++|++||+.|.+..-.
T Consensus 514 ~~~el~~al~~a~~~-~~gp~liev~~~~~~~~ 545 (568)
T 2wvg_A 514 TGGELAEAIKVALAN-TDGPTLIECFIGREDCT 545 (568)
T ss_dssp BHHHHHHHHHHHHHC-CSSCEEEEEECCTTCCC
T ss_pred CHHHHHHHHHHHHhc-CCCcEEEEEEcCccccC
Confidence 789999999998863 27999999999987643
No 49
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.20 E-value=1.2e-11 Score=141.13 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=92.0
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
+.|.+|+++|+|+|+|+|.+ +++|||++|||+++ +.+++|++|.++++|+++||.||+.+++...
T Consensus 420 ~~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~--------- 484 (565)
T 2nxw_A 420 YYAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRT--------- 484 (565)
T ss_dssp TTCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHH---------
T ss_pred ccccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEee---------
Confidence 46899999999999999964 78999999999999 8889999999999897777766653221000
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
.+....| .++-..++..++++||+.++.+ ++.++|.++|
T Consensus 485 ---------~~~~~~~-----------------------------~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al 523 (565)
T 2nxw_A 485 ---------FQPESAF-----------------------------NDLDDWRFADMAAGMGGDGVRV---RTRAELKAAL 523 (565)
T ss_dssp ---------HCTTCGG-----------------------------GBCCCCCHHHHTGGGTSEEEEE---CBHHHHHHHH
T ss_pred ---------ecccCCC-----------------------------CcCCCCCHHHHHHHcCCCEEEe---CCHHHHHHHH
Confidence 0000000 0111234556799999999854 4789999999
Q ss_pred HHhhhcCCCCcE-EEEEEeccCC
Q 005820 345 EEVKNTKTTGPV-LIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~-lI~v~T~kg~ 366 (676)
+++.+ .++|+ +||+.|.+..
T Consensus 524 ~~a~~--~~gp~~liev~~~~~~ 544 (565)
T 2nxw_A 524 DKAFA--TRGRFQLIEAMIPRGV 544 (565)
T ss_dssp HHHHH--CCSSCEEEEEECCTTC
T ss_pred HHHHh--cCCCeEEEEEEccccc
Confidence 99886 46888 9999998754
No 50
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.19 E-value=2.7e-11 Score=138.20 Aligned_cols=126 Identities=18% Similarity=0.175 Sum_probs=92.7
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCC-ccCccCCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPP 263 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~-s~~t~~~~g~~~~ 263 (676)
+.|.+|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+.+ .+.. .+.
T Consensus 424 ~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~-~~~----- 490 (568)
T 2c31_A 424 TWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFG--FSGMELETICRYNLPVTVIIMNNGGIYKGNE-ADP----- 490 (568)
T ss_dssp TTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEESSBSSCSCC-CCS-----
T ss_pred CCccccccHHHHHHHHhC-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHH-HHh-----
Confidence 468899999999999998 378999999999998 56788999999999988888888631 2210 000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAI 343 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~a 343 (676)
.... + .. . .+-.+++..++++||+.++.+ ++.++|.++
T Consensus 491 ~~~~------------~------------------~~--------~-~~~~~d~~~~a~a~G~~~~~v---~~~~el~~a 528 (568)
T 2c31_A 491 QPGV------------I------------------SC--------T-RLTRGRYDMMMEAFGGKGYVA---NTPAELKAA 528 (568)
T ss_dssp BTTB------------C------------------CT--------T-BCCCCCHHHHHHTTTCEEEEE---SSHHHHHHH
T ss_pred hcCC------------c------------------cc--------C-cCCCCCHHHHHHHcCCeEEEe---CCHHHHHHH
Confidence 0000 0 00 0 001234456699999999855 589999999
Q ss_pred HHHhhhcCCCCcEEEEEEeccCCC
Q 005820 344 LEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 344 l~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
|+++.+ .++|++||+.|.+...
T Consensus 529 l~~a~~--~~~p~liev~~~~~~~ 550 (568)
T 2c31_A 529 LEEAVA--SGKPCLINAMIDPDAG 550 (568)
T ss_dssp HHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHh--CCCCEEEEEEeccccC
Confidence 999876 4799999999998654
No 51
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.18 E-value=2.6e-11 Score=138.09 Aligned_cols=126 Identities=14% Similarity=0.181 Sum_probs=89.4
Q ss_pred CCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcc
Q 005820 186 TGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVG 265 (676)
Q Consensus 186 ~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg 265 (676)
.|++|. +|+|+|+|+| . +++|||++|||+++ +..++|++|.++++|+++||.||+...+..
T Consensus 416 ~g~~G~-l~~A~Gaa~a-~----~~~vv~i~GDGsf~--~~~~eL~ta~~~~lpv~ivv~NN~~~~~~~----------- 476 (556)
T 3hww_A 416 SGIDGL-LSTAAGVQRA-S----GKPTLAIVGDLSAL--YDLNALALLRQVSAPLVLIVVNNNGGQIFS----------- 476 (556)
T ss_dssp CCSSSH-HHHHHHHHHH-H----CCCEEEEEEHHHHH--HTGGGHHHHTTCSSCEEEEEEESCC----------------
T ss_pred cccccH-HHHHHHHHhc-C----CCcEEEEEccHHhh--hcchhhHhhcccCCCcEEEEEECCCCCccc-----------
Confidence 466666 9999999998 3 78899999999997 556779999999999999998887422100
Q ss_pred hhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHH
Q 005820 266 ALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILE 345 (676)
Q Consensus 266 ~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~ 345 (676)
.+ .. .....+.+....-.+++..++++||+.++.+ ++.++|.++|+
T Consensus 477 ~~----~~---------------------------~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~~l~~al~ 522 (556)
T 3hww_A 477 LL----PT---------------------------PQSERERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFA 522 (556)
T ss_dssp -------------------------------------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHH
T ss_pred CC----CC---------------------------cchhHHHhccCCCCCCHHHHHHHcCCcEEec---CCHHHHHHHHH
Confidence 00 00 0000001111122356778899999999854 57899999999
Q ss_pred HhhhcCCCCcEEEEEEeccCC
Q 005820 346 EVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 346 ~a~~~~~~~P~lI~v~T~kg~ 366 (676)
++.+ .++|++||+.|.+..
T Consensus 523 ~a~~--~~gp~liev~~~~~~ 541 (556)
T 3hww_A 523 DAWR--TPTTTVIEMVVNDTD 541 (556)
T ss_dssp HHTT--SSSEEEEEEECCSSH
T ss_pred HHHh--CCCCEEEEEECCccc
Confidence 9886 579999999998654
No 52
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.18 E-value=4.5e-11 Score=136.21 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=93.2
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCC-ccCccCCCCCCCC
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQV-SLPTATLDGPIPP 263 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~-s~~t~~~~g~~~~ 263 (676)
+.|++|+++|+|+|+|+| ++++|||++|||+++ +.+++|++|.++++|+++||.||+.+ .+......+...
T Consensus 419 ~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~- 490 (564)
T 2q28_A 419 TWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFG--FSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA- 490 (564)
T ss_dssp TTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHH--TTGGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC-
T ss_pred CCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhh--ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC-
Confidence 568999999999999998 378999999999998 45688999999999988888888632 221100000000
Q ss_pred cchhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhcc-CCCccchhhhcCceeeccCCCCCHHHHHH
Q 005820 264 VGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMI-SGSGSTLFEELGLYYIGPVDGHNVDDLVA 342 (676)
Q Consensus 264 vg~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~-~~~~~~lfea~G~~~~~~vdGhd~~~l~~ 342 (676)
. .. .... .+++..++++||+.++.+ ++.++|.+
T Consensus 491 ---~-------------------------------~~---------~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~ 524 (564)
T 2q28_A 491 ---P-------------------------------SP---------TDLLHHARYDKLMDAFRGVGYNV---TTTDELRH 524 (564)
T ss_dssp ---C-------------------------------CT---------TBCCTTCCGGGGGGGGTCEEEEE---CSHHHHHH
T ss_pred ---c-------------------------------cc---------cccCCCCCHHHHHHHcCCeEEEe---CCHHHHHH
Confidence 0 00 0000 245677899999999855 57999999
Q ss_pred HHHHhhhcCCCCcEEEEEEeccCCC
Q 005820 343 ILEEVKNTKTTGPVLIHVVTEKGRG 367 (676)
Q Consensus 343 al~~a~~~~~~~P~lI~v~T~kg~G 367 (676)
+|+++.+ .++|++||+.|.+...
T Consensus 525 al~~a~~--~~~p~liev~~~~~~~ 547 (564)
T 2q28_A 525 ALTTGIQ--SRKPTIINVVIDPAAG 547 (564)
T ss_dssp HHHHHHH--HTSCEEEEEEBCTTSS
T ss_pred HHHHHHh--CCCCEEEEEEeccccC
Confidence 9999876 4789999999997653
No 53
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.16 E-value=2.1e-11 Score=140.23 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=92.6
Q ss_pred CCCccchhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCc
Q 005820 185 GTGHSSTSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPV 264 (676)
Q Consensus 185 g~G~~G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~v 264 (676)
|.|.+|+++|+|+|+|+|. +++|||++|||+++.+ +++|++|.++++|+++||.||+.+.+...
T Consensus 453 G~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~--------- 516 (604)
T 2x7j_A 453 GANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF--------- 516 (604)
T ss_dssp TTCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG---------
T ss_pred CcCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc---------
Confidence 4577899999999999993 6889999999999865 56799999999998888877753332100
Q ss_pred chhhHHHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHH
Q 005820 265 GALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAIL 344 (676)
Q Consensus 265 g~ls~~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al 344 (676)
+...|... ..+.+......+++..++++||+.++. + ++.++|.++|
T Consensus 517 ------~~~~q~~~-------------------------~~~~~~~~~~~~d~~~~a~a~G~~~~~-v--~~~~el~~al 562 (604)
T 2x7j_A 517 ------LPQASEKT-------------------------HFEDLFGTPTGLDFKHAAALYGGTYSC-P--ASWDEFKTAY 562 (604)
T ss_dssp ------SGGGSCHH-------------------------HHHHHTTCCCCCCTHHHHHHTTCEEEC-C--SSHHHHHHHC
T ss_pred ------CCCCccch-------------------------hhHhhccCCCCCCHHHHHHHcCCeEEe-c--CCHHHHHHHH
Confidence 00000000 011111112235778889999999984 4 4789999999
Q ss_pred HHhhhcCCCCcEEEEEEeccCC
Q 005820 345 EEVKNTKTTGPVLIHVVTEKGR 366 (676)
Q Consensus 345 ~~a~~~~~~~P~lI~v~T~kg~ 366 (676)
+++.+ .++|++||+.|.+..
T Consensus 563 ~~a~~--~~gp~liev~~~~~~ 582 (604)
T 2x7j_A 563 APQAD--KPGLHLIEIKTDRQS 582 (604)
T ss_dssp CCCCS--SCCEEEEEEECCHHH
T ss_pred HHHHh--CCCCEEEEEECCccc
Confidence 88765 589999999998654
No 54
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.09 E-value=8.2e-11 Score=134.54 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=81.4
Q ss_pred chhhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhH
Q 005820 190 STSISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSS 269 (676)
Q Consensus 190 G~~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~ 269 (676)
|+++|+|+|+|++ +++|||++|||+++ +.+++|++|.++++|+++||.||+.+.+-.
T Consensus 439 ~g~l~~AiGaa~~------~~~vv~i~GDGsf~--~~~~eL~ta~~~~l~~~ivv~NN~~~g~~~--------------- 495 (578)
T 3lq1_A 439 DGVVSSALGASVV------FQPMFLLIGDLSFY--HDMNGLLMAKKYKMNLTIVIVNNDGGGIFS--------------- 495 (578)
T ss_dssp SSHHHHHHHHTTT------SSSEEEEEEHHHHH--HTGGGGHHHHHTTCCEEEEEECCC---------------------
T ss_pred ccHHHHHHHHhcC------CCCEEEEEchHHHH--hhHHHHHhhccCCCCeEEEEEECCcCcccc---------------
Confidence 3479999999742 78999999999998 566789999999999999999997422100
Q ss_pred HHhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCCCCHHHHHHHHHHhhh
Q 005820 270 ALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILEEVKN 349 (676)
Q Consensus 270 ~l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdGhd~~~l~~al~~a~~ 349 (676)
.+...+....|+ ........+++..++++||+.++.+ ++.++|.++|+++.+
T Consensus 496 ~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~a~a~G~~~~~v---~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 496 FLPQANEPKYFE-------------------------SLFGTSTELDFRFAAAFYDADYHEA---KSVDELEEAIDKASY 547 (578)
T ss_dssp --------------------------------------------CCCTHHHHHHTTCEEEEC---CSHHHHHHHHHHHTT
T ss_pred ccccccccchhh-------------------------hhccCCCCCCHHHHHHHcCCceEec---CCHHHHHHHHHHHHh
Confidence 000000000000 0000112357788899999999854 589999999999886
Q ss_pred cCCCCcEEEEEEeccCCCcchh
Q 005820 350 TKTTGPVLIHVVTEKGRGYPYA 371 (676)
Q Consensus 350 ~~~~~P~lI~v~T~kg~G~~~a 371 (676)
.++|++||+.|.+.....+.
T Consensus 548 --~~gp~liev~~~~~~~~~~~ 567 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKANH 567 (578)
T ss_dssp --SSSEEEEEEC----------
T ss_pred --CCCCEEEEEECCccccHHHH
Confidence 58999999999886655443
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.16 E-value=1.9e-06 Score=105.80 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=77.4
Q ss_pred CCeEEEEEcCC-cccccchHHHHHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHHHhhhhcChhhHHHHHHh
Q 005820 209 KNNVVAVIGDG-AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSALSRLQSNRPLRELREVA 287 (676)
Q Consensus 209 ~~~vv~viGDG-a~~eG~~~EAln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~l~~~~~~~~~~~~r~~~ 287 (676)
++.||||.||| +++.| ...|.+|...+.|+++||.||+.++. |..+.....+.+..++
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~-tg~Q~s~~t~~~~~t~------------------ 1011 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSN-TGGQSSKATPTGAVAK------------------ 1011 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTT-TTCBCCTTSCTTCCBB------------------
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHh-HHhhhccCCCCCceee------------------
Confidence 47899999999 88855 45799999999999999999984332 2212211111111000
Q ss_pred hhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhcCceeeccCCC-CCHHHHHHHHHHhhhcCCCCcEEEEEEecc
Q 005820 288 KGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDG-HNVDDLVAILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 288 ~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~G~~~~~~vdG-hd~~~l~~al~~a~~~~~~~P~lI~v~T~k 364 (676)
+ ...| +..-.+|+..+++++|+.|+..+.= .+.+++.++|+++.+ .+||++|++.+..
T Consensus 1012 --~-~~~g--------------~~~~~~D~~~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~--~~GP~lI~v~~~c 1070 (1231)
T 2c42_A 1012 --F-AAAG--------------KRTGKKDLARMVMTYGYVYVATVSMGYSKQQFLKVLKEAES--FPGPSLVIAYATC 1070 (1231)
T ss_dssp --T-BTTC--------------CSSCCCCHHHHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH--SSSCEEEEEECCC
T ss_pred --e-cccC--------------CCCCchhHHHHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh--cCCCEEEEEeecC
Confidence 0 0000 0111245566799999999865543 589999999999987 4899999999764
No 56
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.05 E-value=0.26 Score=55.93 Aligned_cols=113 Identities=10% Similarity=-0.048 Sum_probs=77.9
Q ss_pred ceeeccccHHHHHHHHHHHHhcCCeeEEe--echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACEGLKPFCA--IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~G~~p~~~--t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
|++. ...|++++.+|.|+|...-+|-+. |..+.+..++.-|. .+...++|++++...... .|. ..+|.....
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~-~A~~~~vPll~Itg~~p~~~~g~--~~~Q~~d~~ 120 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLY-DAAMDNIPVVAILGSRPQRELNM--DAFQELNQN 120 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHH-HHHHHTCCEEEEEEECCGGGTTT--TCTTCCCCH
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHH-HHHhcCCCEEEEcCCCCcccCCC--CcccccCHH
Confidence 4444 589999999999999985444333 46777665655554 456789998888633322 233 235555556
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCCC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 560 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~~ 560 (676)
.+++.+-.+ .+.+.+++++..+++.|++ ...+|++| +|...
T Consensus 121 ~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 121 PMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp HHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred HHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 788887665 6777888888888887776 23489999 98753
No 57
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=93.13 E-value=1.3 Score=49.77 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=74.2
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCC----
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG---- 513 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~---- 513 (676)
-|++.+ ..|++++.+|.|+|.. |.-.++.|+.+....++.-|. .+...++||+++...... .+.+...||.
T Consensus 42 i~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 42 MEQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIG-GAYAENLPVILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp SEEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred ceEecc-CcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHHHH-HHhhhCCCEEEEeCCCChhHhccCcceeeecccc
Confidence 466665 9999999999999975 822233357777666666654 467889998888743322 3333233442
Q ss_pred --hhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCCC
Q 005820 514 --SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRGN 560 (676)
Q Consensus 514 --~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~~ 560 (676)
.....+++.+-.+ .+.+.+++++...++.|++ ...+|++|.+|...
T Consensus 120 ~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 120 DYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred chHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 1345788877666 3444556555555555443 23499999998753
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=92.82 E-value=0.76 Score=51.76 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=77.2
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG 508 (676)
+.+.+ ..=|++.+ ..|++++.+|.|+|.. |...+| .|+.+....++.-| ..+...++||+++...... .|.
T Consensus 42 ~al~~-~~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l-~~A~~~~vPll~itg~~~~~~~~~-- 116 (566)
T 1ozh_A 42 DSLLD-SSIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGM-ATANSEGDPVVALGGAVKRADKAK-- 116 (566)
T ss_dssp HHGGG-SSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTC----
T ss_pred HHHHh-CCCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHH-HHHHhcCCCEEEEeCCCccccCCC--
Confidence 34444 22366655 8999999999999986 544333 34777765555554 3556779998888633322 232
Q ss_pred CCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 509 PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 509 ~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
..||......+++.+..+ .+...+++++...++.|+. ...+|++|-+|..
T Consensus 117 ~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 117 QVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp ----CCCHHHHHGGGCSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred CcccccCHHHHHHHHhhe-EEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 246666667788887655 4556677777777777665 2358999988864
No 59
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=92.78 E-value=1.2 Score=50.21 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=71.9
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCC---
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCG--- 513 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~--- 513 (676)
-|++. ...|++++.+|.|+|.. | ..+|. |+.+....++.-|. .+...++||+++...... .+.+-..||.
T Consensus 42 i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~ 118 (566)
T 2vbi_A 42 MKQIY-CCNELNCGFSAEGYARSNG-AAAAVVTFSVGAISAMNALG-GAYAENLPVILISGAPNSNDQGTGHILHHTIGK 118 (566)
T ss_dssp SEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEECTTTTHHHHHHHHH-HHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSS
T ss_pred CeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHHHH-HHHhhCCCEEEEECCCChHHhccCceeeeeccC
Confidence 35555 48999999999999985 8 44443 47777666666654 467789998888743332 3332223432
Q ss_pred ---hhhHhHhhcCCCCEEEecCCHHHHHHHHH----HHHHhCCCCeEEEecCCC
Q 005820 514 ---SFDVTFMACLPNMVVMAPSDEAELFHMVA----TAAAIDDRPSCFRYPRGN 560 (676)
Q Consensus 514 ---~~d~a~~~~iP~l~V~~Psd~~E~~~~~~----~al~~~~~P~~ir~~r~~ 560 (676)
.....+++.+-.+ .+.+.+++++...++ .|... .+|++|.+|...
T Consensus 119 ~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~-~GPV~l~iP~d~ 170 (566)
T 2vbi_A 119 TDYSYQLEMARQVTCA-AESITDAHSAPAKIDHVIRTALRE-RKPAYLDIACNI 170 (566)
T ss_dssp SCCTHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHHHHHH-TCCEEEEEETTT
T ss_pred cchHHHHHHHhhhEeE-EEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 1345778877554 333344444444444 44433 499999998753
No 60
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=92.72 E-value=0.78 Score=51.57 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=82.0
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG 508 (676)
+.+.+. +=|++.+ ..|++++.+|.|+|.. |...+|. |+.+.+..++.-|. .+...++||+++...... .|. |
T Consensus 35 ~al~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~-~A~~~~~Pll~itg~~~~~~~~~-~ 110 (563)
T 2uz1_A 35 QACLDH-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIA-NAWLDRTPVLFLTGSGALRDDET-N 110 (563)
T ss_dssp HHHHHH-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHH-HHHHHTCCEEEEEEECCGGGTTS-C
T ss_pred HHHHhc-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHHH-HHHhcCCCEEEEeCCCCcccCCc-h
Confidence 345443 4567665 8999999999999987 6443333 47777665555554 466789998888643332 333 2
Q ss_pred CCCCC-hhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 509 PTHCG-SFDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 509 ~tH~~-~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
.||. .+...+++.+-.+ .+...+++++...++.|+. ...+|++|-+|..
T Consensus 111 -~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 111 -TLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp -CTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred -hhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 3666 6667788887655 5556677777777777765 2458999988865
No 61
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.55 E-value=1.2 Score=50.62 Aligned_cols=121 Identities=8% Similarity=0.016 Sum_probs=80.7
Q ss_pred hhhhhhCCC-ceeeccccHHHHHHHHHHHHhc-CCeeEE--eechhHHHHHHHHHHHhhhcCCCCEEEEe-ecCCC-cCC
Q 005820 433 NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFC--AIYSSFMQRAYDQVVHDVDLQKLPVRFAM-DRAGL-VGA 506 (676)
Q Consensus 433 ~~f~~~~p~-R~id~GIaE~~~v~~A~GlA~~-G~~p~~--~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~-~~~G~-~G~ 506 (676)
+.+.+ .++ |++ ....|++++.+|.|+|.. |.+|-+ .|+.+....++.-|. .+.+.+.|++++. ++..- .+.
T Consensus 58 ~al~~-~~~i~~i-~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~-~A~~~~vPlvvItg~~p~~~~~~ 134 (616)
T 2pan_A 58 SAMRK-HGGIRHI-LARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALY-SASADSIPILCITGQAPRARLHK 134 (616)
T ss_dssp HHHHH-HCCCEEE-ECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHH-HHHHTTCCEEEEEEECCGGGTTT
T ss_pred HHHHh-cCCCcEE-eeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHH-HHHhcCCCEEEEecCCcccccCc
Confidence 34443 243 454 459999999999999987 455543 357777666666553 5677899988876 33322 332
Q ss_pred CCCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 507 DGPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 507 dG~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
| .+|......+++.+-.+. +...++.++..+++.|++. ..+|++|-+|..
T Consensus 135 -~-~~Q~~d~~~~~~~~tk~~-~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 135 -E-DFQAVDIEAIAKPVSKMA-VTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp -T-CTTCCCHHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred -c-cccccCHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 2 245555567788776654 4556788888888888763 358999988763
No 62
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.89 E-value=1 Score=50.59 Aligned_cols=151 Identities=16% Similarity=0.059 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeccccCccch---hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEE-eech
Q 005820 399 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYS 473 (676)
Q Consensus 399 ~~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l---~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~-~t~~ 473 (676)
.+..+++.+.|.+. .-+.++. +.|+..+ +.+.+ .+.+.+-....|+++.-+|.|+|.. |...+| .|+.
T Consensus 21 ~~~a~~lv~~L~~~---GV~~vfg---~PG~~~~~l~~al~~-~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsG 93 (565)
T 2nxw_A 21 MKLAEALLRALKDR---GAQAMFG---IPGDFALPFFKVAEE-TQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYG 93 (565)
T ss_dssp CBHHHHHHHHHHHT---TCCCEEE---CCCGGGHHHHHHHHH-HCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTT
T ss_pred cCHHHHHHHHHHHc---CCCEEEE---CCCcchHHHHHHHHh-CCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 45556665555543 2333333 2233322 34443 3444455669999999999999986 543333 3477
Q ss_pred hHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCC-CCC--hh-hHhHhhcCCCCEEEecCCHHHHHH----HHHH
Q 005820 474 SFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPT-HCG--SF-DVTFMACLPNMVVMAPSDEAELFH----MVAT 543 (676)
Q Consensus 474 ~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~t-H~~--~~-d~a~~~~iP~l~V~~Psd~~E~~~----~~~~ 543 (676)
+....++.-|. .+...++||+++...... .|.+... |+. .. ...+++.+-.+. +...+++++.. .+..
T Consensus 94 pG~~N~~~gv~-~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~ 171 (565)
T 2nxw_A 94 AGAFNMVNAVA-GAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQ-ARLDDPAKAPAEIARVLGA 171 (565)
T ss_dssp HHHHTTHHHHH-HHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCE-EECCCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEE-EEeCCHHHHHHHHHHHHHH
Confidence 77655555543 567789998888643222 3433333 332 32 456788776553 33344444444 4444
Q ss_pred HHHhCCCCeEEEecCC
Q 005820 544 AAAIDDRPSCFRYPRG 559 (676)
Q Consensus 544 al~~~~~P~~ir~~r~ 559 (676)
|.. ..+|++|-+|+.
T Consensus 172 A~~-~~GPV~l~iP~D 186 (565)
T 2nxw_A 172 ARA-QSRPVYLEIPRN 186 (565)
T ss_dssp HHH-HTCCEEEEEEGG
T ss_pred HHh-CCCCEEEECChh
Confidence 443 369999999864
No 63
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=91.75 E-value=0.84 Score=51.65 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=78.5
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
|++. ...|++++.+|.|+|.. |...+|. |+.+....++--| ..+...++||+++...... .|. | .+|.....
T Consensus 52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~g~-~-~~Q~~d~~ 127 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGL-ADALLDSVPLVAITGQVPRRMIGT-D-AFQETPIV 127 (590)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGTTT-T-CTTCCCHH
T ss_pred cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHH-HHHHhhCCCEEEEeCcCCccccCC-C-cccccCHH
Confidence 5554 48999999999999996 5444433 4777765555554 3557789998888633222 333 2 35656666
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
.+++.+-.+ .+...+++++..+++.|++. ..+|++|-+|..
T Consensus 128 ~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 128 EVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp HHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 788887665 56667888899888888863 358999988764
No 64
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=91.37 E-value=1.6 Score=48.92 Aligned_cols=122 Identities=14% Similarity=0.088 Sum_probs=77.7
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG 508 (676)
+.+.+.-.=|++.+ ..|+++.-+|-|+|.. |...+| .|+.+....++.-| ..+...+.||+++...... .|. |
T Consensus 34 dal~~~~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi-~~A~~~~vPvl~itg~~~~~~~~~-~ 110 (549)
T 3eya_A 34 DSLNRMGTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGL-FDCHRNHVPVLAIAAHIPSSEIGS-G 110 (549)
T ss_dssp HHHHHHCSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEESCGGGTTS-C
T ss_pred HHHHhcCCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHH-HHHHhhCCCEEEEeCCCchhhcCC-C
Confidence 34444312355554 8999999999999986 643333 35777766555554 3567889998888633222 233 2
Q ss_pred CCCCChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 509 PTHCGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 509 ~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
.+|......+++.+-.+ .+...+++++...++.|++ ...+|++|-+|..
T Consensus 111 -~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 111 -YFQETHPQELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp -CTTCCCHHHHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred -CCCccCHHHHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 35555566788876654 4455566666666666554 2568999988763
No 65
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=91.19 E-value=0.71 Score=52.05 Aligned_cols=116 Identities=18% Similarity=0.070 Sum_probs=79.8
Q ss_pred CCceeeccccHHHHHHHHHHHHhcCCeeE--EeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChh
Q 005820 440 PTRCFDVGIAEQHAVTFAAGLACEGLKPF--CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSF 515 (676)
Q Consensus 440 p~R~id~GIaE~~~v~~A~GlA~~G~~p~--~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~ 515 (676)
+=|++. ...|+++.-+|.|+|...-+|. +.|+.+....++.-|. .+...+.|++++...... .|.. ..||...
T Consensus 48 ~i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v~-~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d 124 (573)
T 2iht_A 48 GIDFVL-TRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIA-TSVLDRSPVIALAAQSESHDIFPN-DTHQCLD 124 (573)
T ss_dssp TCEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHH-HHHHHTCCEEEEEEESCGGGCCTT-TSTTCCC
T ss_pred CCeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHHH-HHHhhCCCEEEEcccCcccccCCc-CccccCC
Confidence 345555 4899999999999998744443 3357887766666653 567789998888633322 2321 3477777
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPRG 559 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r~ 559 (676)
...+++.+..+ .+...+++++...++.|++. ..+|++|-+|..
T Consensus 125 ~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 125 SVAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp HHHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred HHHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 77888887665 45566777777777777752 348999988864
No 66
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=90.75 E-value=1.6 Score=50.32 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=77.2
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeE-EeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPF-CAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~-~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
|++- ...|++++.+|.|+|.. |...+ +.|+.+....++--| ..+...++||+++...... .|. ..+|..+..
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gi-a~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPM-ADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHH-HHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHH-HHHHHcCCCEEEEeCCCChhhcCC--CCccccCHH
Confidence 5555 48999999999999986 64433 335777765555554 3556789998888633222 232 235666666
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHHh----CCCCeEEEecC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAAI----DDRPSCFRYPR 558 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~~----~~~P~~ir~~r 558 (676)
.+++.+-.+. +...+++++...++.|++. ..+||+|-+|.
T Consensus 198 ~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~ 241 (677)
T 1t9b_A 198 GISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPK 241 (677)
T ss_dssp HHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred HHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence 7888776654 4456788888888888762 46899998884
No 67
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=90.63 E-value=2 Score=48.35 Aligned_cols=113 Identities=11% Similarity=0.062 Sum_probs=70.6
Q ss_pred ceeeccccHHHHHHHHHHHHh-cCCeeEE-eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCCh---
Q 005820 442 RCFDVGIAEQHAVTFAAGLAC-EGLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS--- 514 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~-~G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~--- 514 (676)
|++. ...|++++.+|.|+|. .| ..+| .|+.+....++.-|. .+...++|++++...... .+.+...||..
T Consensus 65 ~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~tsGpG~~N~~~gi~-~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 65 KWIG-NANELNASYMADGYARTKK-AAAFLTTFGVGELSAINGLA-GSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred eEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEcCCCCHHHHHHHHH-HHhhhCCCEEEEeCCCCHHHhhccccceeecccc
Confidence 4444 5999999999999995 48 4433 347777766666654 567789998888633222 22233445421
Q ss_pred ---hhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEecCC
Q 005820 515 ---FDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRYPRG 559 (676)
Q Consensus 515 ---~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~~r~ 559 (676)
+...+++.+....... .+ +++...++.|++ ...+|++|-+|..
T Consensus 142 ~~~~~~~~~~~~tk~~~~v-~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTLL-TA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp CCCHHHHHTGGGCSEEEEC-CT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred chHHHHHHhhhhEEEEEEE-Cc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 1346777776554443 34 555555555544 1358999988764
No 68
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=90.60 E-value=1.2 Score=50.47 Aligned_cols=113 Identities=8% Similarity=-0.044 Sum_probs=76.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCe-eEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~-p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
|++.+ ..|+++.-+|-|+|.. |.. .++.|+.+....++--| ..+...+.||+++...... .|. |..||..+..
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv-~~A~~~~vPll~itg~~~~~~~~~-~~~~Q~~d~~ 121 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAM-QEARTGRIPAVHIGLNSDGRLAGR-SEAAQQVPWQ 121 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHH-HHHHHTTCCEEEEEEESCGGGTTC-TTCSSCCCGG
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHH-HHHHhcCCCEEEEecCCcccccCC-CCcccccChh
Confidence 56555 8999999999999986 533 33445777765554444 3567889998888633222 232 2157777666
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
. ++.+..+ .+...+++++...++.|+. ...+|++|.+|..
T Consensus 122 ~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 122 S-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp G-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred h-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 7 7766554 4556677777777777765 2348999999875
No 69
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.52 E-value=2.3 Score=47.26 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=75.0
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhH
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDV 517 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~ 517 (676)
|++. ...|++++.+|.|+|.. |...+|. |..+.+..++.-|. .+...++||+++...... .|.+..+|. .+..
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~-~A~~~~~Pll~itg~~~~~~~~~~~~q~~-~d~~ 116 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALS-NAWNSHSPLIVTAGQQTRAMIGVEALLTN-VDAA 116 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHH-HHHHTTCCEEEEEEECCHHHHTTTCTTCC-TTGG
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHH-HHhhcCCCEEEEeCCCcccccCCCccccc-ccHH
Confidence 5554 48999999999999997 6555553 46677766666664 467889998888633222 344333331 3455
Q ss_pred hHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCCC
Q 005820 518 TFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRGN 560 (676)
Q Consensus 518 a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~~ 560 (676)
.+++.+..+ ...+.+++++...+..|+. ...+|++|-+|...
T Consensus 117 ~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 117 NLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp GSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred HHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 677777665 4455566666666666654 34579999998753
No 70
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=89.99 E-value=2 Score=48.77 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=74.3
Q ss_pred hhhhhhCC-CceeeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCC
Q 005820 433 NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGAD 507 (676)
Q Consensus 433 ~~f~~~~p-~R~id~GIaE~~~v~~A~GlA~~-G~~p~~-~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~d 507 (676)
+.+.+..+ =|++.+ .-|+++.-+|.|+|.. |...+| .|+.+....++.-| ..+...++||+++...... .|.+
T Consensus 42 dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gi-a~A~~~~vPvl~itG~~~~~~~~~~ 119 (603)
T 4feg_A 42 DALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGL-YDAREDHVPVLALIGQFGTTGMNMD 119 (603)
T ss_dssp HHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHH-HHHHHTTCCEEEEEEECCTTTTTSC
T ss_pred HHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHH-HHHHHcCCCEEEEecCCcccccCCC
Confidence 44544322 366654 8999999999999976 644333 35778776555554 3567889998887632221 2332
Q ss_pred CCCCCChhhHhHhhcCCCCEEEecCCHHHHHHHH----HHHHHhCCCCeEEEecCC
Q 005820 508 GPTHCGSFDVTFMACLPNMVVMAPSDEAELFHMV----ATAAAIDDRPSCFRYPRG 559 (676)
Q Consensus 508 G~tH~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~----~~al~~~~~P~~ir~~r~ 559 (676)
.+|......+++.+-.+. ....+++++...+ +.|.. ..+|++|-+|..
T Consensus 120 --~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~-~~GPV~l~iP~d 171 (603)
T 4feg_A 120 --TFQEMNENPIYADVADYN-VTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVD 171 (603)
T ss_dssp --CTTCCCCGGGGTTTCSEE-EECCCSTTHHHHHHHHHHHHHH-HTSEEEEEEETT
T ss_pred --ccccccHHHHhhhhceEE-EEcCCHHHHHHHHHHHHHHHhc-CCCCEEEEeChh
Confidence 345454556777665543 3333444444444 44444 479999999875
No 71
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.39 E-value=6.2 Score=44.14 Aligned_cols=147 Identities=11% Similarity=0.062 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcC-CCEEEEeccccCccch---hhhhhhCCC-ceeeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHH
Q 005820 405 FAEALIAEAEVD-KDVVAIHAAMGGGTGL---NLFLRRFPT-RCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQ 477 (676)
Q Consensus 405 ~~~aL~~~~~~d-~~iv~i~aD~~gs~~l---~~f~~~~p~-R~id~GIaE~~~v~~A~GlA~~-G~~p~~-~t~~~Fl~ 477 (676)
.++.|.+.+++. -+-++. +.|+..+ +.+.+ .++ |++- ..-|+++.-+|-|+|.. |...+| .|+.+...
T Consensus 10 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~ 84 (556)
T 3hww_A 10 WAAVILEALTRHGVRHICI---APGSRSTLLTLAAAE-NSAFIHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVA 84 (556)
T ss_dssp HHHHHHHHHHTTTCCEEEE---CCCTTSHHHHHHHHH-CTTCEEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEE---cCCCCcHHHHHHHhh-CCCceEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHH
Confidence 445556555543 333333 2344432 34433 344 5555 57899999999999986 644333 35777776
Q ss_pred HHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEEE--ecCC---HHHHHHHHHHHHHh-CC
Q 005820 478 RAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVM--APSD---EAELFHMVATAAAI-DD 549 (676)
Q Consensus 478 ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~--~Psd---~~E~~~~~~~al~~-~~ 549 (676)
.++--| ..+...+.||+++...... .|.+ .||......+++.+-.+... .|.+ ++++..+++.|+.. ..
T Consensus 85 N~~~gi-a~A~~d~vPll~itG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~ 161 (556)
T 3hww_A 85 NLYPAL-IEAGLTGEKLILLTADRPPELIDCG--ANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHA 161 (556)
T ss_dssp TTHHHH-HHHHHHCCCEEEEEEECCGGGSSSS--CTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCS
T ss_pred hhhHHH-HHHHHhCCCeEEEeCCCCHHHhccC--CCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCC
Confidence 555554 3567789998888633222 3332 36766666777777665443 3432 45688899999863 35
Q ss_pred CCeEEEecCC
Q 005820 550 RPSCFRYPRG 559 (676)
Q Consensus 550 ~P~~ir~~r~ 559 (676)
+|++|-+|..
T Consensus 162 GPV~i~iP~d 171 (556)
T 3hww_A 162 GGVHINCPFA 171 (556)
T ss_dssp SCEEEEEECC
T ss_pred CCEEEeCCcC
Confidence 7999999874
No 72
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.15 E-value=3.6 Score=46.60 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHcCCCEEEEeccccCccch---hhhhhhCC-CceeeccccHHHHHHHHHHHHhc-CCee-EEeech
Q 005820 400 SYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFLRRFP-TRCFDVGIAEQHAVTFAAGLACE-GLKP-FCAIYS 473 (676)
Q Consensus 400 ~~~~a~~~aL~~~~~~d~~iv~i~aD~~gs~~l---~~f~~~~p-~R~id~GIaE~~~v~~A~GlA~~-G~~p-~~~t~~ 473 (676)
++.+++.+.|.+. .-+.++. +.|+..+ +.+.+ .+ =|++.+ .-|+++.-+|-|+|.. |... ++.|+.
T Consensus 32 ~~a~~lv~~L~~~---GV~~vFg---~PG~~~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsG 103 (604)
T 2x7j_A 32 HYIGSFIDEFALS---GITDAVV---CPGSRSTPLAVLCAA-HPDISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSG 103 (604)
T ss_dssp HHHHHHHHHHHHH---TCCEEEE---CCCSTTHHHHHHHHH-CTTCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred HHHHHHHHHHHHc---CCCEEEE---CcCcccHHHHHHHHh-CCCceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECCh
Confidence 4445554544443 3344443 2344332 34443 23 366665 9999999999999986 5432 333577
Q ss_pred hHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEEE--ecCCH----HHHHHHHHHHH
Q 005820 474 SFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVVM--APSDE----AELFHMVATAA 545 (676)
Q Consensus 474 ~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V~--~Psd~----~E~~~~~~~al 545 (676)
+....++--| ..+...++||+++...... .|.+ .+|......+++.+-.+... .|.+. .++...++.|+
T Consensus 104 pG~~N~~~gi-a~A~~~~vPlv~ItG~~~~~~~g~~--~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~ 180 (604)
T 2x7j_A 104 TAAANFYPAV-VEAHYSRVPIIVLTADRPHELREVG--APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAA 180 (604)
T ss_dssp HHHHTTHHHH-HHHHHHTCCEEEEEEECCGGGSSSC--CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHhhcCCCEEEEeCCCCHHHhCCC--CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHH
Confidence 7765555544 3566789998888633222 3332 35555556677777665433 34430 11445555554
Q ss_pred H----hCCCCeEEEecCC
Q 005820 546 A----IDDRPSCFRYPRG 559 (676)
Q Consensus 546 ~----~~~~P~~ir~~r~ 559 (676)
. ...+||+|-+|..
T Consensus 181 ~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 181 GEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp HHHHSSSCCEEEEEEECC
T ss_pred HHhhCCCCCcEEEEcccC
Confidence 4 2568999999865
No 73
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=88.25 E-value=3.2 Score=46.61 Aligned_cols=116 Identities=11% Similarity=-0.007 Sum_probs=77.5
Q ss_pred CCceeeccccHHHHHHHHHHHHhc-CCe-eEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCC-CCCCCCCh
Q 005820 440 PTRCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGS 514 (676)
Q Consensus 440 p~R~id~GIaE~~~v~~A~GlA~~-G~~-p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~-dG~tH~~~ 514 (676)
.=|++.+ ..|+++.-+|-|+|.. |.. .++.|+.+....++.-|. .+...++||+++...... .|. .| .+|..
T Consensus 47 ~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i~-~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~ 123 (568)
T 2c31_A 47 GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSLA-HATTNCFPMILLSGSSEREIVDLQQG-DYEEM 123 (568)
T ss_dssp TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHH-HHHHHTCCEEEEEEECCHHHHHTTCC-CTTCC
T ss_pred CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-HHHhcCCCEEEEccCCCccccCCCCC-ccccc
Confidence 3466655 9999999999999987 543 333458887766666553 567789998888633222 231 12 35555
Q ss_pred hhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 515 FDVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 515 ~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
+...+++.+-.+ .+...+++++...+..|++ ...+|++|-+|..
T Consensus 124 dq~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 124 DQMNVARPHCKA-SFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp CHHHHSGGGSSE-EEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred CHHHHHHhhhhe-eeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 556788877665 3445566667666666665 2568999998875
No 74
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=87.40 E-value=4.9 Score=45.17 Aligned_cols=148 Identities=14% Similarity=0.128 Sum_probs=85.5
Q ss_pred HHHHHHHHHHc-CCCEEEEeccccCccch---hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEE-eechhHHHH
Q 005820 405 FAEALIAEAEV-DKDVVAIHAAMGGGTGL---NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFC-AIYSSFMQR 478 (676)
Q Consensus 405 ~~~aL~~~~~~-d~~iv~i~aD~~gs~~l---~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~-~t~~~Fl~r 478 (676)
.++.|.+.+++ .-+-++. +.|+..+ +.+.+.-.=|++-+ .-|+++.-+|-|+|.. |...+| .|..+....
T Consensus 13 ~a~~lv~~L~~~GV~~vFg---~PG~~~~~l~dal~~~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N 88 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAII---SPGSRSTPLALMMAEHPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAAN 88 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEE---CCCTTTHHHHHHHHHCSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEE---CCCCccHHHHHHHHhCCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhhh
Confidence 34445554443 3343433 2344332 34443222366665 7999999999999986 644333 357777655
Q ss_pred HHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCChhhHhHhhcCCCCEE--EecCCHHH----HHHHHHHHHH----
Q 005820 479 AYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGSFDVTFMACLPNMVV--MAPSDEAE----LFHMVATAAA---- 546 (676)
Q Consensus 479 a~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~~d~a~~~~iP~l~V--~~Psd~~E----~~~~~~~al~---- 546 (676)
++--| ..+...++||+++...... .|. | .+|..+...+++.+-.+.. -.|.+..+ +..+++.|+.
T Consensus 89 ~~~gi-a~A~~d~vPll~itG~~p~~~~g~-~-~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~ 165 (578)
T 3lq1_A 89 YFPAV-AEANLSQIPLIVLTADRPHELRNV-G-APQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMK 165 (578)
T ss_dssp THHHH-HHHHHTTCCEEEEEEECCGGGTTS-S-CTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHH-HHHHhcCCCeEEEeCCCCHHhhcC-C-CCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhC
Confidence 55544 3567889998888632221 232 2 3555555667777665543 34666433 2334455544
Q ss_pred hCCCCeEEEecCC
Q 005820 547 IDDRPSCFRYPRG 559 (676)
Q Consensus 547 ~~~~P~~ir~~r~ 559 (676)
...+|++|-+|..
T Consensus 166 gr~GPV~l~iP~d 178 (578)
T 3lq1_A 166 TPRGPVHLNFPLR 178 (578)
T ss_dssp SSCCCEEEEEECC
T ss_pred CCCCcEEEECccC
Confidence 3478999999874
No 75
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=87.25 E-value=9 Score=42.77 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=70.3
Q ss_pred ceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCCCCCCCh---
Q 005820 442 RCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTHCGS--- 514 (676)
Q Consensus 442 R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG~tH~~~--- 514 (676)
|++. ...|++++-+|.|+|.. | .++|. |+.+....++.-|. .+...++||+++...... .+.+-..|+..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia-~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIA-GSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHH-HHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHHH-HHHhhCCCEEEEECCCChHHhhcccccccccCCc
Confidence 5555 58999999999999985 7 44433 57777655655553 456789998888633222 12222223211
Q ss_pred ---hhHhHhhcCCCCEEEecCCH----HHHHHHHHHHHHhCCCCeEEEecCCC
Q 005820 515 ---FDVTFMACLPNMVVMAPSDE----AELFHMVATAAAIDDRPSCFRYPRGN 560 (676)
Q Consensus 515 ---~d~a~~~~iP~l~V~~Psd~----~E~~~~~~~al~~~~~P~~ir~~r~~ 560 (676)
+...+++.+-.. .+...++ ..+...++.|... .+|++|-+|...
T Consensus 121 ~~q~~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~-~GPV~l~iP~d~ 171 (563)
T 2vk8_A 121 DFTVFHRMSANISET-TAMITDIATAPAEIDRCIRTTYVT-QRPVYLGLPANL 171 (563)
T ss_dssp CSSHHHHHHHTTCSE-EEECCCTTTHHHHHHHHHHHHHHH-TSCEEEEEETTG
T ss_pred chHHHHHHhhhhEEE-EEEeCCHHHHHHHHHHHHHHHHhC-CCCEEEEechhh
Confidence 235677776654 3344443 4455555555543 599999998753
No 76
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=86.12 E-value=6 Score=44.08 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=71.3
Q ss_pred hhhhhhCCCceeeccccHHHHHHHHHHHHhc-CCeeEEe-echhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCCCC
Q 005820 433 NLFLRRFPTRCFDVGIAEQHAVTFAAGLACE-GLKPFCA-IYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGADG 508 (676)
Q Consensus 433 ~~f~~~~p~R~id~GIaE~~~v~~A~GlA~~-G~~p~~~-t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~dG 508 (676)
+.+.+ .++=-+-....|++++.+|.|+|.. | .++|. |+.+....++--| ..+...++|++++...... .+.+.
T Consensus 36 ~al~~-~~~i~~i~~~~E~~A~~~A~Gyar~tg-~~v~~~tsGpG~~N~~~gv-~~A~~~~~Pll~itg~~p~~~~~~~~ 112 (552)
T 1ovm_A 36 DHVID-SPDICWVGCANELNASYAADGYARCKG-FAALLTTFGVGELSAMNGI-AGSYAEHVPVLHIVGAPGTAAQQRGE 112 (552)
T ss_dssp HHHHH-CSSCEEEECSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHTHHHH-HHHHHTTCCEEEEEEECCHHHHHHTC
T ss_pred HHHhc-CCCceEEeeCcHHHHHHHHHHHHHhhC-CcEEEEccCCcHHHHHHHH-HHHhhhcCCEEEEECCCCHHHHhccc
Confidence 34443 3432334459999999999999986 6 54433 4777765555555 3567889998888633221 12222
Q ss_pred CCCCCh------hhHhHhhcCCCCEEEecCC--HHHHHHHHHHHHHhCCCCeEEEecCC
Q 005820 509 PTHCGS------FDVTFMACLPNMVVMAPSD--EAELFHMVATAAAIDDRPSCFRYPRG 559 (676)
Q Consensus 509 ~tH~~~------~d~a~~~~iP~l~V~~Psd--~~E~~~~~~~al~~~~~P~~ir~~r~ 559 (676)
..|+.. +...+++.+-......+.+ +..+...++.|... .+|++|-+|..
T Consensus 113 ~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~-~GPV~l~iP~d 170 (552)
T 1ovm_A 113 LLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRE-RRPGYLMLPAD 170 (552)
T ss_dssp CCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHH-TCCEEEEEEHH
T ss_pred ccccccCCCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhC-CCCEEEEeehh
Confidence 222211 2345777766654444431 33444444445433 49999988764
No 77
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=83.88 E-value=9 Score=42.78 Aligned_cols=115 Identities=11% Similarity=0.011 Sum_probs=76.3
Q ss_pred CceeeccccHHHHHHHHHHHHhc-CCe-eEEeechhHHHHHHHHHHHhhhcCCCCEEEEeecCCC--cCC-CCCCCCChh
Q 005820 441 TRCFDVGIAEQHAVTFAAGLACE-GLK-PFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGL--VGA-DGPTHCGSF 515 (676)
Q Consensus 441 ~R~id~GIaE~~~v~~A~GlA~~-G~~-p~~~t~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~--~G~-dG~tH~~~~ 515 (676)
=|++.+ ..|+++.-+|-|+|.. |.- .++.|+.+....++--|. .+...++||+++...... .|. .| .+|..+
T Consensus 46 i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi~-~A~~~~vPll~itg~~~~~~~~~~~~-~~Q~~d 122 (564)
T 2q28_A 46 IRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALA-NATVNGFPMIMISGSSDRAIVDLQQG-DYEELD 122 (564)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHH-HHHHHTCCEEEEEEECCHHHHHTTSC-CTTCCC
T ss_pred CcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHHH-HHHhcCCCEEEEeCCCCccccCCCCC-cccccc
Confidence 466655 9999999999999997 543 333458887766666553 567789998888633222 221 12 355556
Q ss_pred hHhHhhcCCCCEEEecCCHHHHHHHHHHHHH----hCCCCeEEEecCC
Q 005820 516 DVTFMACLPNMVVMAPSDEAELFHMVATAAA----IDDRPSCFRYPRG 559 (676)
Q Consensus 516 d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~----~~~~P~~ir~~r~ 559 (676)
...+++.+-... +...+++++...++.|+. ...+|++|-+|..
T Consensus 123 q~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 123 QMNAAKPYAKAA-FRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred HHHHHHHhhhee-eecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 667888776653 444556666666666655 2568999988864
No 78
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=82.30 E-value=3.4 Score=43.96 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhc----C-CeeEEeec--hhHHHH-HHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCC--ChhhH---h
Q 005820 452 HAVTFAAGLACE----G-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDV---T 518 (676)
Q Consensus 452 ~~v~~A~GlA~~----G-~~p~~~t~--~~Fl~r-a~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~--~~~d~---a 518 (676)
..+.+|.|+|++ | -+++++++ +.|.+- .++. ++.++..++||++++...++ |..++++. ...|+ +
T Consensus 146 ~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~~-gi~~~~~~~~~~~d~~~~a 223 (368)
T 1w85_A 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG-INFAGAFKAPAIFVVQNNRF-AISTPVEKQTVAKTLAQKA 223 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSCSCSGGGG
T ss_pred ccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHH-HHHHHHHCcCEEEEEEcCCc-cceeccccccCCCCHHHHH
Confidence 345666777765 2 24444443 444432 2333 46788899999999866553 32222221 11222 2
Q ss_pred HhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 519 FMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 519 ~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
-.-.+|++.| .=.|+.++...++.|++ ..++|++|-.
T Consensus 224 ~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 224 VAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp GGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2223455443 44589999999999986 3578998855
No 79
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=80.30 E-value=3.9 Score=43.98 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=58.2
Q ss_pred HHHHHHHHhc------CCeeEEee-chhHHHHHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCC--ChhhHhHhhcCC
Q 005820 454 VTFAAGLACE------GLKPFCAI-YSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GSFDVTFMACLP 524 (676)
Q Consensus 454 v~~A~GlA~~------G~~p~~~t-~~~Fl~ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~--~~~d~a~~~~iP 524 (676)
+.+|.|+|++ +.++++.+ -+.|.+-.+-+-++.++..++||++++...++ +..+++.. ...|++-...--
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~-~i~~~~~~~~~~~d~~~~a~a~ 246 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGY-AISTPTSEQYRGDGIAARGPGY 246 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSE-ETTEEGGGTCSSSTTGGGTGGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCce-eeeecccccCCCCCHHHHHHHc
Confidence 3566777764 33444444 24443322222356778899999999876664 32333322 223332222223
Q ss_pred CCEEE--ecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 525 NMVVM--APSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 525 ~l~V~--~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
|+.++ .=.|+.++...++.|++ ..++|++|-.
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 55554 33478999999988876 3578998854
No 80
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=74.69 E-value=11 Score=43.47 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=68.1
Q ss_pred eeeccccHHHHHHHHHHHHhcC---------------CeeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCC
Q 005820 443 CFDVGIAEQHAVTFAAGLACEG---------------LKPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGL 503 (676)
Q Consensus 443 ~id~GIaE~~~v~~A~GlA~~G---------------~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~ 503 (676)
.+.+|..=+ .+++|.|+|++- -+.++++..+. ++ ..++.+ +.++..++| ++++.+..++
T Consensus 136 ~~~tG~lG~-gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~ 213 (690)
T 3m49_A 136 DATTGPLGQ-GIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEAS-SLAAHLQLGRLVVLYDSNDI 213 (690)
T ss_dssp CSCCCSTTH-HHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSB
T ss_pred ccCCccccc-cHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHH-HHHHHhCCCeEEEEEECCCe
Confidence 344444333 356777777652 23455554443 22 345554 567888987 6666666664
Q ss_pred cCCCCCCCCC-hhhH-hHhhcCCCCEEEec---CCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 504 VGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 504 ~G~dG~tH~~-~~d~-a~~~~iP~l~V~~P---sd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
+-+|+++.. .+|+ ..+.++ |+.++.+ .|..++...++.|.+..++|++|...
T Consensus 214 -~i~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v~ 270 (690)
T 3m49_A 214 -SLDGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEVR 270 (690)
T ss_dssp -CSSSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred -ecccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 445555332 2333 345554 8999988 68999999999886535789988653
No 81
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=73.38 E-value=6.7 Score=42.24 Aligned_cols=101 Identities=14% Similarity=0.030 Sum_probs=55.3
Q ss_pred HHHHHHHHhc----C-CeeEEeec--hhHHHH-HHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCC---ChhhHhHhhc
Q 005820 454 VTFAAGLACE----G-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC---GSFDVTFMAC 522 (676)
Q Consensus 454 v~~A~GlA~~----G-~~p~~~t~--~~Fl~r-a~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~---~~~d~a~~~~ 522 (676)
+.+|.|+|++ | -+.+++++ +.|.+- .++. ++.++..++||++++...++ |..+++.. ...|++-...
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~Vv~NN~~-gi~~~~~~~~~~~~d~a~~a~ 264 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTA-LTFAHVYRAPVILNVVNNQW-AISTFQAIAGGESTTFAGRGV 264 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHHTCCEEEEEEECSE-ETTEEGGGGTTTTCCSTHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHH-HHHHHHHCcCEEEEEECCCc-ceeeccccccCCCCCHHHHHH
Confidence 3566666654 2 23444443 334332 2333 56778899999998866554 22222221 1223221111
Q ss_pred CCCCEEE--ecCCHHHHHHHHHHHHHh---CCCCeEEEe
Q 005820 523 LPNMVVM--APSDEAELFHMVATAAAI---DDRPSCFRY 556 (676)
Q Consensus 523 iP~l~V~--~Psd~~E~~~~~~~al~~---~~~P~~ir~ 556 (676)
--|+.++ .=.|+.++...++.|++. .++|++|-.
T Consensus 265 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 265 GCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp HTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred HcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1244333 334788999999888762 578998855
No 82
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=72.69 E-value=12 Score=42.94 Aligned_cols=89 Identities=20% Similarity=0.138 Sum_probs=55.0
Q ss_pred eeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCC-CChhhH-hHhhcCCCCEEEec---CCHHH
Q 005820 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDV-TFMACLPNMVVMAP---SDEAE 536 (676)
Q Consensus 466 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH-~~~~d~-a~~~~iP~l~V~~P---sd~~E 536 (676)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++. +..+|+ ..+.. -|+.++.+ .|..+
T Consensus 147 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 223 (669)
T 2r8o_A 147 HYTYAFMGDGCMMEGISHEVC-SLAGTLKLGKLIAFYDDNGI-SIDGHVEGWFTDDTAMRFEA-YGWHVIRDIDGHDAAS 223 (669)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHH-TTCEEEEEEETTCHHH
T ss_pred CeEEEEECHhHhcchHHHHHH-HHHHHcCCCcEEEEEECCCc-EeccccccccCccHHHHHHH-CCCeEEeEECCCCHHH
Confidence 3455554443 23 345554 567888988 7777776664 3334443 222343 24555 38877733 37999
Q ss_pred HHHHHHHHHHhCCCCeEEEec
Q 005820 537 LFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 537 ~~~~~~~al~~~~~P~~ir~~ 557 (676)
+...++.|.+..++|++|...
T Consensus 224 l~~al~~a~~~~~~P~lI~~~ 244 (669)
T 2r8o_A 224 IKRAVEEARAVTDKPSLLMCK 244 (669)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEEE
Confidence 999999997645789988653
No 83
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=71.98 E-value=15 Score=42.26 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=56.7
Q ss_pred eeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEE-ec---CCHH
Q 005820 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVM-AP---SDEA 535 (676)
Q Consensus 466 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~-~P---sd~~ 535 (676)
+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|++... .+|+ ..+.+ -|+.++ .- .|..
T Consensus 149 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~d~N~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~~d~~ 225 (673)
T 1r9j_A 149 HYTYVYCGDGCLMEGVCQEAL-SLAGHLALEKLIVIYDSNYI-SIDGSTSLSFTEQCHQKYVA-MGFHVIEVKNGDTDYE 225 (673)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECSB-CSSSBGGGTCCCCHHHHHHH-TTCEEEEESCTTTCHH
T ss_pred CEEEEEECcchhcccHHHHHH-HHHHHhCCCcEEEEEECCCC-ccccchhhccCHhHHHHHHH-CCCeEEEEeCCCCCHH
Confidence 3455554444 23 335554 567788998 7777776664 334544322 2343 34555 489888 44 6889
Q ss_pred HHHHHHHHHHHhCCCCeEEEec
Q 005820 536 ELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 536 E~~~~~~~al~~~~~P~~ir~~ 557 (676)
++...++.|.+..++|++|...
T Consensus 226 ~l~~Al~~A~~~~~~P~lI~~~ 247 (673)
T 1r9j_A 226 GLRKALAEAKATKGKPKMIVQT 247 (673)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEe
Confidence 9999999987656789988654
No 84
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=71.60 E-value=11 Score=43.46 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=54.9
Q ss_pred eeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCC-CChhhH-hHhhcCCCCEEEec-C---CHH
Q 005820 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTH-CGSFDV-TFMACLPNMVVMAP-S---DEA 535 (676)
Q Consensus 466 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH-~~~~d~-a~~~~iP~l~V~~P-s---d~~ 535 (676)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +.++++. +..+|+ ..+..+ |+.++.+ - |..
T Consensus 149 ~~vv~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 225 (680)
T 1gpu_A 149 NYTYVFLGDGCLQEGISSEAS-SLAGHLKLGNLIAIYDDNKI-TIDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLA 225 (680)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHH
T ss_pred CeEEEEECCCccchhhHHHHH-HHHHHhCCCcEEEEEECCCc-eEecccccccCccHHHHHHhc-CCeEEEEecCCCCHH
Confidence 3455554444 23 345554 567888998 7777776664 3334443 112333 244553 8888733 3 788
Q ss_pred HHHHHHHHHHHhCCCCeEEEec
Q 005820 536 ELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 536 E~~~~~~~al~~~~~P~~ir~~ 557 (676)
++...++.|.+..++|++|...
T Consensus 226 ~l~~al~~A~~~~~~P~lI~~~ 247 (680)
T 1gpu_A 226 GIAKAIAQAKLSKDKPTLIKMT 247 (680)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEE
Confidence 9999999987645789988653
No 85
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=70.44 E-value=6.2 Score=33.72 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=48.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc-cCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 586 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 586 G~dv~Iva~G----s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~-~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
...|+|.+.| .....|..|.+.|++.|++.+.+|+.. .|--.+.+.+... .+=.+|+++....||+. .+.. +
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~-~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d-~l~~-l 90 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE-DEEVRQGLKTFSNWPTYPQLYVRGDLVGGLD-IVKE-L 90 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS-CHHHHHHHHHHHSCCSSCEEECSSSEEECHH-HHHH-H
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC-CHHHHHHHHHHhCCCCCCEEEECCEEEcCHH-HHHH-H
Confidence 3468999888 566889999999999999999999874 1211123333322 22235666665689975 3333 3
Q ss_pred HHcCC
Q 005820 661 AQDGL 665 (676)
Q Consensus 661 ~~~~~ 665 (676)
.+.|.
T Consensus 91 ~~~g~ 95 (109)
T 1wik_A 91 KDNGE 95 (109)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 44444
No 86
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=69.05 E-value=15 Score=38.82 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=58.7
Q ss_pred eccccHHHHHHHHHHHHhc----C-CeeEEeec--hhHHHH-HHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCC--C--
Q 005820 445 DVGIAEQHAVTFAAGLACE----G-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTH--C-- 512 (676)
Q Consensus 445 d~GIaE~~~v~~A~GlA~~----G-~~p~~~t~--~~Fl~r-a~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH--~-- 512 (676)
.+|.-++ .+++|.|+|++ + -++++++. +.|.+- .++. ++.++..++|+++++...+ .|..+++. .
T Consensus 142 ~~g~lG~-~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Ea-l~~A~~~~lpvi~vv~NN~-~gi~~~~~~~~~~ 218 (367)
T 1umd_A 142 VASPIAS-HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAG-INFAAVQGAPAVFIAENNF-YAISVDYRHQTHS 218 (367)
T ss_dssp CCSSTTT-THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHH-HHHHHHTTCSEEEEEEECS-EETTEEHHHHCSS
T ss_pred CCchhhh-hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHH-HHHHHHhCcCEEEEEecCC-eeeccChhhccCC
Confidence 4444443 34555555553 3 23444443 444332 3333 3567889999998886666 34333321 1
Q ss_pred -ChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 513 -GSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 513 -~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
...+++-.-.+|.+. +.-.|+.++...++.|++ ..++|++|-.
T Consensus 219 ~d~~~~a~a~G~~~~~-Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~ 265 (367)
T 1umd_A 219 PTIADKAHAFGIPGYL-VDGMDVLASYYVVKEAVERARRGEGPSLVEL 265 (367)
T ss_dssp SCSGGGGGGTTSCEEE-EETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCHHHHHHHcCCcEEE-eCCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 112221112345553 356788888887777765 3578998855
No 87
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=67.77 E-value=3.9 Score=36.99 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=44.3
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc-cCCEEEEEcCCCCCCHHH
Q 005820 588 RVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-SHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 588 dv~Iva~G----s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~-~~~~vIvvEe~~~gG~gs 654 (676)
.|+|.+.| .....|..|.+.|++.|++.+.+|+.. .|--.+.+.+... .+=.+|++.....||+..
T Consensus 36 ~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~-d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~ 106 (135)
T 2wci_A 36 PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQ-NPDIRAELPKYANWPTFPQLWVDGELVGGCDI 106 (135)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCC-CHHHHHHHHHHHCCCCcCEEEECCEEEEChHH
Confidence 57777777 566889999999999999999999874 1211223333322 222356677666899853
No 88
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=65.50 E-value=12 Score=32.03 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=47.0
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHH
Q 005820 586 GERVALLGYGT----AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 586 G~dv~Iva~Gs----~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG~gs~ 655 (676)
...|+|.+.++ ....|..|.+.|++.|++.+.+|+..- |--.+.+.+.. ..+=..|.|.....||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTEEEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCEEEeCHHHH
Confidence 45788988883 778999999999999999999998632 11122333332 22334567776668997643
No 89
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=64.65 E-value=33 Score=38.81 Aligned_cols=103 Identities=16% Similarity=0.297 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHH-HHHhhhcCCCEEEEEECCCCCccCccCCCCCCCCcchhhHH
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEA-MNNAGYLDSDMIVILNDNKQVSLPTATLDGPIPPVGALSSA 270 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EA-ln~A~~~~~~li~Iv~dN~~~s~~t~~~~g~~~~vg~ls~~ 270 (676)
.+++|.|+|++ | -+.+++.+++.. + .++|- ++.++..++|+++++..-+.. . .+|++-.
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~-~--~a~dqi~~~~a~~~~pvv~~~~~~g~~-g----~~G~tH~------- 432 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFL-Q--RAYDQVLHDVAIQKLPVLFAIDRAGIV-G----ADGQTHQ------- 432 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGG-G--GGHHHHHHTTTTTTCCCEEEEESCBCC-C----TTCGGGC-------
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHH-H--HHHHHHHHHHHhcCCCEEEEEECCccC-C----CCCCccC-------
Confidence 46677788775 3 466778888875 2 57765 677888999999999665521 1 1222110
Q ss_pred HhhhhcChhhHHHHHHhhhhhcccCCchHHHHHHHHHHHhhccCCCccchhhhc-CceeeccCCCCCHHHHHHHHHHhhh
Q 005820 271 LSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEEL-GLYYIGPVDGHNVDDLVAILEEVKN 349 (676)
Q Consensus 271 l~~~~~~~~~~~~r~~~~~~~~~~g~~~~~~~~k~~~~~~~~~~~~~~~lfea~-G~~~~~~vdGhd~~~l~~al~~a~~ 349 (676)
+.++++ ++... ||.++.| .|..++...++.+-+
T Consensus 433 --------------------------~~~d~~-----------------~~~~iP~l~v~~P---~d~~e~~~~l~~a~~ 466 (621)
T 2o1s_A 433 --------------------------GAFDLS-----------------YLRCIPEMVIMTP---SDENECRQMLYTGYH 466 (621)
T ss_dssp --------------------------BCSHHH-----------------HTTTSTTCEEECC---SSHHHHHHHHHHHHH
T ss_pred --------------------------chHHHH-----------------HHhcCCCCEEEec---CCHHHHHHHHHHHHH
Confidence 012222 24554 8888878 677888888887765
Q ss_pred cCCCCcEEEEEE
Q 005820 350 TKTTGPVLIHVV 361 (676)
Q Consensus 350 ~~~~~P~lI~v~ 361 (676)
. .++|++|-..
T Consensus 467 ~-~~~Pv~i~~~ 477 (621)
T 2o1s_A 467 Y-NDGPSAVRYP 477 (621)
T ss_dssp C-CSSCEEEECC
T ss_pred c-CCCCEEEEeC
Confidence 3 3789988754
No 90
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=64.62 E-value=26 Score=36.41 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=28.6
Q ss_pred hhhc-CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEecc
Q 005820 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTEK 364 (676)
Q Consensus 321 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~k 364 (676)
++.. ||.++.| .|..+....++.+.+ .++|++|-..+.-
T Consensus 138 l~~iP~l~V~~P---sd~~e~~~~l~~A~~--~~~Pv~i~~p~~l 177 (338)
T 1qs0_B 138 FTQVCGLRTVMP---SNPYDAKGLLIASIE--CDDPVIFLEPKRL 177 (338)
T ss_dssp HTTSTTCEEECC---CSHHHHHHHHHHHHH--SSSCEEEEEEGGG
T ss_pred HhcCCCCEEEee---CCHHHHHHHHHHHHh--cCCcEEEEEchHh
Confidence 4454 8888878 678888888887766 3789999766443
No 91
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=63.81 E-value=10 Score=32.78 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=50.2
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh-ccCCEEEEEcCCCCCCHHHHHHHHH
Q 005820 586 GERVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA-KSHEVLITVEEGSIGGFGSHVVQFL 660 (676)
Q Consensus 586 G~dv~Iva~G----s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~-~~~~~vIvvEe~~~gG~gs~v~~~l 660 (676)
...|+|.+-| +....|..|.+.|++.|++.+.+|+.. .|--.+.+.+.. ..+=..|.|.....||+.. + ..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~-d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~-l-~~l 91 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS-DEEVRQGLKAYSSWPTYPQLYVSGELIGGLDI-I-KEL 91 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG-CHHHHHHHHHHHTCCSSCEEEETTEEEECHHH-H-HHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC-CHHHHHHHHHHHCCCCCCEEEECCEEEecHHH-H-HHH
Confidence 4468888776 456889999999999999999999874 121112333332 2233456777666899763 3 344
Q ss_pred HHcCCC
Q 005820 661 AQDGLL 666 (676)
Q Consensus 661 ~~~~~l 666 (676)
.+.|-|
T Consensus 92 ~~~G~L 97 (111)
T 3zyw_A 92 EASEEL 97 (111)
T ss_dssp HHTTCH
T ss_pred HHCCCH
Confidence 566654
No 92
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=63.76 E-value=9.1 Score=40.56 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHHHHHhc----C-CeeEEeec--hhHHHH-HHHHHHHhhhcCCCCEEEEeecCCCcCCCCCC--CCChhhHhH-hh
Q 005820 453 AVTFAAGLACE----G-LKPFCAIY--SSFMQR-AYDQVVHDVDLQKLPVRFAMDRAGLVGADGPT--HCGSFDVTF-MA 521 (676)
Q Consensus 453 ~v~~A~GlA~~----G-~~p~~~t~--~~Fl~r-a~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~t--H~~~~d~a~-~~ 521 (676)
.+.+|+|+|++ | -+++++++ +.+.+- .++. ++.++..++||++++...++ |...++ .....|+.- .-
T Consensus 145 ~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ea-ln~A~~~~lpvi~vv~NN~~-g~~t~~~~~~~~~~~~~ra~ 222 (365)
T 2ozl_A 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA-YNMAALWKLPCIFICENNRY-GMGTSVERAAASTDYYKRGD 222 (365)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHH-HHHHHHTTCCEEEEEEECSE-ETTEEHHHHCSCCCGGGTTT
T ss_pred hhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHH-HHHHHHHCcCEEEEEECCCc-ccCCCcccccCCCCHHHHhC
Confidence 34566666664 2 34444443 333332 2333 47788999999999866553 211110 111112110 11
Q ss_pred cCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 522 CLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 522 ~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
.+|++.| .=.|+.++...++.|++ ..++|++|-.
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 259 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILMEL 259 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3555543 44589999999988875 3578998854
No 93
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=62.85 E-value=9.7 Score=31.89 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=49.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc-----cCCEEEEEcCCC-CCCH-HHHHHHHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK-----SHEVLITVEEGS-IGGF-GSHVVQFL 660 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~-----~~~~vIvvEe~~-~gG~-gs~v~~~l 660 (676)
.|+|.+. +....|..|.+.|++.||..+.+|+.. |.+...++.+ .+=.+|++.++. ..|+ ..+|.+.|
T Consensus 5 ~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L 79 (92)
T 2lqo_A 5 ALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKL 79 (92)
T ss_dssp CEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHH
T ss_pred cEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHH
Confidence 5677665 555789999999999999999999863 4554443322 122456676654 4555 35677778
Q ss_pred HHcCCCC
Q 005820 661 AQDGLLD 667 (676)
Q Consensus 661 ~~~~~ld 667 (676)
.+.+-|+
T Consensus 80 ~el~gL~ 86 (92)
T 2lqo_A 80 VKIAGLE 86 (92)
T ss_dssp HHHHCCS
T ss_pred HHhcCCc
Confidence 7765443
No 94
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=62.32 E-value=30 Score=36.05 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEE-EcCCcccccchHHHHHHhhh---------cCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAV-IGDGAMTAGQAYEAMNNAGY---------LDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~v-iGDGa~~eG~~~EAln~A~~---------~~~~li~Iv~dN~ 248 (676)
.+++|.|+|++ | -+.++++ ++|.. ..+++.+.+.+. +++|+++++.. +
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G 131 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-G 131 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-S
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-c
Confidence 46778888875 3 2444444 88887 268888875442 67999999984 5
No 95
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=62.11 E-value=25 Score=40.09 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=54.5
Q ss_pred eeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEEecC---CHHH
Q 005820 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS---DEAE 536 (676)
Q Consensus 466 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~~Ps---d~~E 536 (676)
+.++++..+. ++ ..++.+ +.++..++| ++++++..++ +-++++... ..|+ ..+.. -|+.++.+. |..+
T Consensus 151 ~~v~~~~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a-~G~~~~~~vdG~d~~~ 227 (651)
T 2e6k_A 151 HYTYVLASDGDLMEGVSGEAA-SLAGHWGLSKLIVFWDDNRI-SIDGPTDLAFTEDVLARYRA-YGWQTLRVEDVNDLEA 227 (651)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECCE-ETTEEGGGTCCSCHHHHHHH-TTCEEEEESCTTCHHH
T ss_pred CEEEEEEChhhhchhHHHHHH-HHHHHcCCCeEEEEEECCCc-ccccccccccCccHHHHHHh-CCCeEEEEeCCCCHHH
Confidence 4455554443 23 345554 567888998 7777776664 223333211 2333 34555 488887343 7999
Q ss_pred HHHHHHHHHHhCCCCeEEEec
Q 005820 537 LFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 537 ~~~~~~~al~~~~~P~~ir~~ 557 (676)
+...++.|.+ .++|++|...
T Consensus 228 l~~al~~a~~-~~~P~lI~~~ 247 (651)
T 2e6k_A 228 LRKAIKLAKL-DERPTLIAVR 247 (651)
T ss_dssp HHHHHHHHHH-SSSCEEEEEE
T ss_pred HHHHHHHHHH-CCCCEEEEEE
Confidence 9999999976 6899988653
No 96
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=60.19 E-value=43 Score=38.26 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcC---------------CeeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC
Q 005820 453 AVTFAAGLACEG---------------LKPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG 513 (676)
Q Consensus 453 ~v~~A~GlA~~G---------------~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~ 513 (676)
.+++|.|+|++- -+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|++...
T Consensus 121 gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal-~~A~~~~L~~livi~dnN~~-~i~~~~~~~ 198 (663)
T 3kom_A 121 GVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEAC-SLAGTLGLNKLVAFWDDNNI-SIDGDTKGW 198 (663)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHH-HHHHHHTCTTEEEEEEECC------CGGGT
T ss_pred HHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHH-HHHHHhCCCeEEEEEECCCc-ccccchhhh
Confidence 356677777642 24566665444 22 345544 567888998 6666666664 334443321
Q ss_pred -hhhH-hHhhcCCCCEEEecC---CHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 514 -SFDV-TFMACLPNMVVMAPS---DEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 514 -~~d~-a~~~~iP~l~V~~Ps---d~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
..|+ ..+.++ |+.++.+. |..++...++.|.+..++|++|...
T Consensus 199 ~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 199 FSDNTPERFRAY-GWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp CCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred cchhHHHHHHHC-CCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2233 345554 88887443 7899999999886535889988654
No 97
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=59.98 E-value=22 Score=41.09 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcC---------------CeeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC
Q 005820 453 AVTFAAGLACEG---------------LKPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG 513 (676)
Q Consensus 453 ~v~~A~GlA~~G---------------~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~ 513 (676)
.+++|.|+|++- -+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|+++..
T Consensus 160 gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal-~~A~~~~L~~livI~dnN~~-~i~~~~~~~ 237 (711)
T 3uk1_A 160 GLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEAC-SLAGTLKLNKLIALYDDNGI-SIDGDVVNW 237 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGT
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHH-HHHHHhCCCcEEEEEECCCc-ccccchhhh
Confidence 356677777642 24555654443 22 445554 577889998 7777776664 333444322
Q ss_pred -hhhH-hHhhcCCCCEEEec---CCHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 514 -SFDV-TFMACLPNMVVMAP---SDEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 514 -~~d~-a~~~~iP~l~V~~P---sd~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
..|+ ..++++ |+.++.| .|..++...++.|.+ .++|++|...
T Consensus 238 ~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A~~-~~~P~lI~v~ 284 (711)
T 3uk1_A 238 FHDDTPKRFEAY-GWNVIPNVNGHDVDAIDAAIAKAKR-SDKPSLICCK 284 (711)
T ss_dssp CCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHTT-CSSCEEEEEE
T ss_pred cCCCHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 2333 345554 8887775 488999999998865 6889988653
No 98
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=58.27 E-value=42 Score=35.41 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEE-EcCCcccccchHHHHHH-hhhc--------CCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAV-IGDGAMTAGQAYEAMNN-AGYL--------DSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~v-iGDGa~~eG~~~EAln~-A~~~--------~~~li~Iv~dN~ 248 (676)
.+++|.|+|++ | -+.++++ ++|.. + .+++.+.+ ++.+ ++|+++++..-+
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl-~--~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg 168 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFI-W--LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGS 168 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHH-H--HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 46778888875 3 2444545 88976 3 68888755 5544 899999887544
No 99
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=57.45 E-value=33 Score=39.27 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=54.4
Q ss_pred eeEEeechhH-HH--HHHHHHHHhhhcCCC-CEEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEEecC----CHH
Q 005820 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKL-PVRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAPS----DEA 535 (676)
Q Consensus 466 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~l-pV~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~~Ps----d~~ 535 (676)
+.++++..+. ++ ..++.+ +.++..++ |++++++..++ +.+|++... ..|+ ..+.++ |+.++.+. |..
T Consensus 160 ~~v~~i~GDG~~~eG~~~Eal-~~A~~~~L~~li~i~~nN~~-~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~ 236 (675)
T 1itz_A 160 HYTYVILGDGCQMEGIANEAC-SLAGHWGLGKLIAFYDDNHI-SIDGDTEIAFTEDVSTRFEAL-GWHTIWVKNGNTGYD 236 (675)
T ss_dssp CCEEEEECHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTTCHH
T ss_pred CEEEEEECHhHhchhHHHHHH-HHHHHhCCCcEEEEEECCCc-cCCCChhhhcChhHHHHHHhC-CCEEEEEecCCCCHH
Confidence 3455554443 23 345554 56788898 57777776664 223333211 2333 355554 88887443 788
Q ss_pred HHHHHHHHHHHhCCCCeEEEec
Q 005820 536 ELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 536 E~~~~~~~al~~~~~P~~ir~~ 557 (676)
++...++.|.+..++|++|...
T Consensus 237 ~l~~al~~a~~~~~~P~lI~~~ 258 (675)
T 1itz_A 237 DIRAAIKEAKAVTDKPTLIKVT 258 (675)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEEe
Confidence 9999999987645789988653
No 100
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=55.41 E-value=53 Score=33.79 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHchhcCCCCeEEE-E-EcCCcccccchHHHHHH-hhh--------cCCCEEEEEE
Q 005820 191 TSISAGLGMAVGRDLKGRKNNVVA-V-IGDGAMTAGQAYEAMNN-AGY--------LDSDMIVILN 245 (676)
Q Consensus 191 ~~ls~A~G~AlA~~~~~~~~~vv~-v-iGDGa~~eG~~~EAln~-A~~--------~~~~li~Iv~ 245 (676)
..+++|.|+|++ | .++++ + ++++. + .++|.+.+ ++. .+.|++++++
T Consensus 61 ~~v~~a~G~A~~----G--~rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 117 (324)
T 1w85_B 61 GIGGLAIGLALQ----G--FRPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIRSP 117 (324)
T ss_dssp HHHHHHHHHHHT----T--CEEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHhC----C--CEEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEEEe
Confidence 346778888875 2 44554 5 88886 3 68888854 454 6799998886
No 101
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=55.39 E-value=33 Score=38.92 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHhc----C-CeeEEeec--hhHHH-HHHHHHHHhhhcCCCCEEEEeecCCCcCCCCCCCCChh----------
Q 005820 454 VTFAAGLACE----G-LKPFCAIY--SSFMQ-RAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSF---------- 515 (676)
Q Consensus 454 v~~A~GlA~~----G-~~p~~~t~--~~Fl~-ra~dqi~~~~a~~~lpV~iv~~~~G~~G~dG~tH~~~~---------- 515 (676)
+.+|.|+|++ | -++++++. ..|.. ..++.+ +.++..++|+++++...++ +.++++.....
T Consensus 129 l~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL-~~A~~~~~pli~IvnnN~~-~i~~~~~~~~~~~~~l~~~~~ 206 (629)
T 2o1x_A 129 LTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAAL-NTIGDMGRKMLIVLNDNEM-SISENVGAMNKFMRGLQVQKW 206 (629)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHH-HHHHHHCCSEEEEEEECSB-SSSBCCSSHHHHC--------
T ss_pred HhHHHHHHHHHHHhCCCCeEEEEEchhhhhccHHHHHH-HHHHhhCCCEEEEEECCCC-CCCCChhHHHHHHHHHhhchh
Confidence 4566677665 2 44555553 33431 345554 5667778999998866553 33333331000
Q ss_pred ---------------------------h-H---------hHhhcCCCCEEE---ecCCHHHHHHHHHHHHHhCCCCeEEE
Q 005820 516 ---------------------------D-V---------TFMACLPNMVVM---APSDEAELFHMVATAAAIDDRPSCFR 555 (676)
Q Consensus 516 ---------------------------d-~---------a~~~~iP~l~V~---~Psd~~E~~~~~~~al~~~~~P~~ir 555 (676)
| + .++.. -|+..+ ...|..++...++.|.+ .++|++|.
T Consensus 207 y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea-~G~~~~g~vdG~d~~~l~~al~~A~~-~~~P~lI~ 284 (629)
T 2o1x_A 207 FQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAA-MGVRYVGPVDGHNVQELVWLLERLVD-LDGPTILH 284 (629)
T ss_dssp -------------------------------------CCCTTGG-GTCEEEEEEESSCHHHHHHHHHHHTT-SSSEEEEE
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHh-cCCeEEeeECCcCHHHHHHHHHHHHh-cCCCEEEE
Confidence 1 2 22222 245544 44589999999999865 57898875
Q ss_pred ec
Q 005820 556 YP 557 (676)
Q Consensus 556 ~~ 557 (676)
..
T Consensus 285 v~ 286 (629)
T 2o1x_A 285 IV 286 (629)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 102
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=55.01 E-value=27 Score=30.53 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=46.2
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCc-EEEEEccccCcCcHHH---HHHHh-ccCCEEEEEcCCCCCCHHH
Q 005820 586 GERVALLGYGT----AVQSCLAASALLESNGLR-LTVADARFCKPLDHAL---IRSLA-KSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 586 G~dv~Iva~Gs----~v~~aleAa~~L~~~Gi~-v~VId~~~l~P~d~e~---i~~~~-~~~~~vIvvEe~~~gG~gs 654 (676)
...|+|.+.++ ....|..|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+=..|.|.....||+..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~----d~~~~~~l~~~tg~~tvP~vfI~g~~IGG~d~ 92 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DPELRQGIKDYSNWPTIPQVYLNGEFVGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC----CHHHHHHHHHHhCCCCcCeEEECCEEEeChHH
Confidence 45799999983 678899999999999994 99999863 3333 33331 2333456777767899863
No 103
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=53.43 E-value=35 Score=35.52 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=27.0
Q ss_pred hhhc-CceeeccCCCCCHHHHHHHHHHhhhcCCCCcEEEEEEec
Q 005820 321 FEEL-GLYYIGPVDGHNVDDLVAILEEVKNTKTTGPVLIHVVTE 363 (676)
Q Consensus 321 fea~-G~~~~~~vdGhd~~~l~~al~~a~~~~~~~P~lI~v~T~ 363 (676)
+... ||.++.| .|..+....++.+.+ .++|++|-....
T Consensus 154 l~~iP~l~V~~P---sd~~e~~~~l~~a~~--~~~Pv~i~~p~~ 192 (342)
T 2bfd_B 154 FAHCPGIKVVIP---RSPFQAKGLLLSCIE--DKNPCIFFEPKI 192 (342)
T ss_dssp HHTSTTCEEECC---SSHHHHHHHHHHHHH--SSSCEEEEEEGG
T ss_pred HhcCCCcEEEee---CCHHHHHHHHHHHHh--cCCcEEEEecch
Confidence 3444 7887777 677888888877765 378999976543
No 104
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=53.32 E-value=34 Score=39.42 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=55.5
Q ss_pred eeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hhhH-hHhhcCCCCEEEec---CCHHH
Q 005820 466 KPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SFDV-TFMACLPNMVVMAP---SDEAE 536 (676)
Q Consensus 466 ~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~d~-a~~~~iP~l~V~~P---sd~~E 536 (676)
+.++++..+. ++ ..++. ++.++..++| ++++.+..++ +-+|++... .+|+ ..+.++ ||.++.. .|..+
T Consensus 169 ~~v~~~~GDG~l~eG~~~EA-l~~A~~~~L~nli~i~d~N~~-si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~a 245 (700)
T 3rim_A 169 HYIYVIASDGDIEEGVTSEA-SSLAAVQQLGNLIVFYDRNQI-SIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVG 245 (700)
T ss_dssp CCEEEEEEHHHHHSHHHHHH-HHHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHH
T ss_pred CeEEEEECCcccccChHHHH-HHHHHHcCCCcEEEEEECCCc-ccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHH
Confidence 3455555444 23 33554 4678899997 8888777664 223333221 2333 244554 8887765 48899
Q ss_pred HHHHHHHHHHhCCCCeEEEec
Q 005820 537 LFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 537 ~~~~~~~al~~~~~P~~ir~~ 557 (676)
+...++.|.+..++|++|...
T Consensus 246 l~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 246 IEEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEEE
Confidence 999999986646889998664
No 105
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=52.65 E-value=34 Score=38.94 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcC------------CeeEEeechhH-HH--HHHHHHHHhhhcCCCC-EEEEeecCCCcCCCCCCCCC-hh
Q 005820 453 AVTFAAGLACEG------------LKPFCAIYSSF-MQ--RAYDQVVHDVDLQKLP-VRFAMDRAGLVGADGPTHCG-SF 515 (676)
Q Consensus 453 ~v~~A~GlA~~G------------~~p~~~t~~~F-l~--ra~dqi~~~~a~~~lp-V~iv~~~~G~~G~dG~tH~~-~~ 515 (676)
.+++|.|+|++. -+.++++..+. ++ ..++.+ +.++..++| ++++.+..++ +-+|++... .+
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal-~~A~~~~L~~livi~nnN~~-~i~~~~~~~~~~ 196 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEAC-SLAGLHKLDNFILIYDSNNI-SIEGDVGLAFNE 196 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHH-HHHHHTTCTTEEEEEEECSE-ETTEEGGGTCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHH-HHHHHcCCCcEEEEEECCCc-ccccchhhhcCh
Confidence 456677777642 24455554443 22 445554 567888997 7777666664 223333221 22
Q ss_pred hH-hHhhcCCCCEEEecC---CHHHHHHHHHHHHHhCCCCeEEEec
Q 005820 516 DV-TFMACLPNMVVMAPS---DEAELFHMVATAAAIDDRPSCFRYP 557 (676)
Q Consensus 516 d~-a~~~~iP~l~V~~Ps---d~~E~~~~~~~al~~~~~P~~ir~~ 557 (676)
|+ ..+.++ |+.++ +. |..++...++.|.+ .++|++|...
T Consensus 197 d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~-~~~P~lI~v~ 239 (632)
T 3l84_A 197 NVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKK-STKPCLIIAK 239 (632)
T ss_dssp CHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHT-CSSCEEEEEE
T ss_pred hHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHh-CCCCEEEEEe
Confidence 33 355554 88887 44 78999999999865 6899988653
No 106
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=46.81 E-value=96 Score=34.99 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECCC
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 248 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN~ 248 (676)
.+++|.|+|++ |....+++.++++.. .++|.+.+++..+.|+++++..-+
T Consensus 367 ~v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g 416 (616)
T 3mos_A 367 MVSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCG 416 (616)
T ss_dssp HHHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBS
T ss_pred HHHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCC
Confidence 36677777765 333456678999974 689999998888999998876554
No 107
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=45.82 E-value=58 Score=31.70 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHH
Q 005820 599 QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 659 (676)
Q Consensus 599 ~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~ 659 (676)
..+.++++.|++.|.+|+++|+.. .+|.+...+.++..+.||+.=--+.+++.+.+..+
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~ 105 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMPAWWMGEPWILKKY 105 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECChHhccCCHHHHHH
Confidence 344456677888899999999984 67888877778888888876544445555544443
No 108
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=45.20 E-value=88 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHchhcCCCCeEEEE-EcCCcccccchHHHHHH-hhh--------cCCCEEEEEE
Q 005820 192 SISAGLGMAVGRDLKGRKNNVVAV-IGDGAMTAGQAYEAMNN-AGY--------LDSDMIVILN 245 (676)
Q Consensus 192 ~ls~A~G~AlA~~~~~~~~~vv~v-iGDGa~~eG~~~EAln~-A~~--------~~~~li~Iv~ 245 (676)
.+++|.|+|++ | -+.++++ +++.. + .++|.+.+ ++. .+.|+++++.
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 118 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP 118 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc
Confidence 46778888776 3 2444444 88885 3 68888854 454 5799999887
No 109
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=44.66 E-value=40 Score=26.97 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEEccccCc-CcHHH---HHHHhc-c-----CCEEEEEcCC-CCCCHHHH
Q 005820 597 AVQSCLAASALLESNGLRLTVADARFCKP-LDHAL---IRSLAK-S-----HEVLITVEEG-SIGGFGSH 655 (676)
Q Consensus 597 ~v~~aleAa~~L~~~Gi~v~VId~~~l~P-~d~e~---i~~~~~-~-----~~~vIvvEe~-~~gG~gs~ 655 (676)
....|..|.+.|++.|++.+.+|+..... -|.+. +.+... . +=..|+++++ ..||+...
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l 82 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQL 82 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHH
Confidence 45789999999999999999999975321 23333 333322 2 2245667444 47997654
No 110
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=43.01 E-value=38 Score=31.87 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=40.9
Q ss_pred hHHHHHHHHHH-HHhCCCcEEEEEccccCc----------CcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 597 AVQSCLAASAL-LESNGLRLTVADARFCKP----------LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 597 ~v~~aleAa~~-L~~~Gi~v~VId~~~l~P----------~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
.-..+..+++. |++.|.+++++|+..+.. =+.+.+.+.+...+.||++=--+.+++...+..++-
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld 93 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLD 93 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHH
Confidence 44556666777 888899999999876421 123344445556676666544345666666666653
No 111
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=42.30 E-value=18 Score=33.89 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=25.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
.||+||+.|..-- .||-.|.+.|++|.|++-.
T Consensus 3 ~dV~IIGaGpaGL---~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 3 VPIAIIGTGIAGL---SAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CCEEEECCSHHHH---HHHHHHHHTTCCEEEECSS
T ss_pred CCEEEECcCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 3899999998653 4677788899999999943
No 112
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.83 E-value=24 Score=30.16 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=46.8
Q ss_pred cEEEEEechhHHHHH------HHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhcc------------CCEEEEEcCCCC
Q 005820 588 RVALLGYGTAVQSCL------AASALLESNGLRLTVADARFCKPLDHALIRSLAKS------------HEVLITVEEGSI 649 (676)
Q Consensus 588 dv~Iva~Gs~v~~al------eAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~------------~~~vIvvEe~~~ 649 (676)
.|+|.+. +....|. +|.+.|++.|+..+.+|+.. |.+...++.+. +=..|++++...
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i 83 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC 83 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence 4666654 3345566 78889999999999999875 33433333222 124667887678
Q ss_pred CCHHHHHHHHHHHcCCCCCcc
Q 005820 650 GGFGSHVVQFLAQDGLLDGTV 670 (676)
Q Consensus 650 gG~gs~v~~~l~~~~~ld~~~ 670 (676)
||+... . .+.+.|.|+.-+
T Consensus 84 GG~d~l-~-~l~~~g~L~~~L 102 (111)
T 2ct6_A 84 GDYDSF-F-ESKESNTVFSFL 102 (111)
T ss_dssp EEHHHH-H-HHHTTTCHHHHH
T ss_pred eCHHHH-H-HHHHcCCHHHHH
Confidence 987643 2 345666554433
No 113
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=40.54 E-value=15 Score=30.18 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=48.1
Q ss_pred cEEEEEechhHHHH------HHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc---cCCEEEEEcCCCCCCHHHHHHH
Q 005820 588 RVALLGYGTAVQSC------LAASALLESNGLRLTVADARFCKPLDHALIRSLAK---SHEVLITVEEGSIGGFGSHVVQ 658 (676)
Q Consensus 588 dv~Iva~Gs~v~~a------leAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~---~~~~vIvvEe~~~gG~gs~v~~ 658 (676)
.|+|.+. +....| ..|.+.|++.|+..+.+|+..- |-..+.+.+... .+=..|++++...||+.. +.+
T Consensus 3 ~v~ly~~-~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~-l~~ 79 (93)
T 1t1v_A 3 GLRVYST-SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNHYCGDYEL-FVE 79 (93)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHH-HHH
T ss_pred CEEEEEc-CCCCCchhhHHHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHH-HHH
Confidence 3555554 333445 7888999999999999998742 222334444433 122466778767899764 333
Q ss_pred HHHHcCCCCCcc
Q 005820 659 FLAQDGLLDGTV 670 (676)
Q Consensus 659 ~l~~~~~ld~~~ 670 (676)
+.++|.|+.-+
T Consensus 80 -l~~~g~L~~~l 90 (93)
T 1t1v_A 80 -AVEQDTLQEFL 90 (93)
T ss_dssp -HHHTTCHHHHT
T ss_pred -HHhcCCHHHHh
Confidence 45666655443
No 114
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=40.41 E-value=24 Score=29.61 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=46.1
Q ss_pred cEEEEEec----hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--ccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 588 RVALLGYG----TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 588 dv~Iva~G----s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
.|+|.+.| +....|..|...|++.|++...+|+..- |--.+.+.+.. .... .|+++....||+.... .+.
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP-~v~i~g~~igg~d~~~--~l~ 93 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYP-QLYVKGELVGGLDIVK--ELK 93 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSC-EEEETTEEEECHHHHH--HHH
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCC-eEEECCEEEeChHHHH--HHH
Confidence 57777765 4557888999999989999999998742 21112233332 2334 4456654579976433 245
Q ss_pred HcCCC
Q 005820 662 QDGLL 666 (676)
Q Consensus 662 ~~~~l 666 (676)
+.|.|
T Consensus 94 ~~g~L 98 (105)
T 2yan_A 94 ENGEL 98 (105)
T ss_dssp HTTCH
T ss_pred HCCCH
Confidence 55544
No 115
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=39.91 E-value=44 Score=27.84 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=42.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--ccCCEEEEEcCCCCCCHHH
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~~~~~vIvvEe~~~gG~gs 654 (676)
..|+|.+. +....|..|.+.|++.|+..+.+|+..-.+. .+.+.+.. ..+=..|+++.-..||+..
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g~~igG~d~ 83 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDDQHIGGCDD 83 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETTEEEESHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECCEEEeChHH
Confidence 46777765 4558899999999999999999998752111 22233332 1222355666656798764
No 116
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=38.72 E-value=43 Score=33.16 Aligned_cols=64 Identities=20% Similarity=0.059 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccCcCc--------HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 599 QSCLAASALLESNGLRLTVADARFCKPLD--------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 599 ~~aleAa~~L~~~Gi~v~VId~~~l~P~d--------~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
..+..+++.+++.|++++++|+.-+..++ .+.+.+.+...+.||++=--+.+++.+.+..+|-.
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~ 123 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQIDW 123 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHH
Confidence 44555677788889999999998753211 34555666677777766544567777777766643
No 117
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=38.40 E-value=42 Score=29.26 Aligned_cols=65 Identities=23% Similarity=0.247 Sum_probs=45.2
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhCCCc---EEEEEccccCcCcHHH---HHHHh-ccCCEEEEEcCCCCCCHHH
Q 005820 586 GERVALLGYGT----AVQSCLAASALLESNGLR---LTVADARFCKPLDHAL---IRSLA-KSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 586 G~dv~Iva~Gs----~v~~aleAa~~L~~~Gi~---v~VId~~~l~P~d~e~---i~~~~-~~~~~vIvvEe~~~gG~gs 654 (676)
...|+|++.++ ....|..|.+.|++.|+. .+.+|+.. |.+. +.+.. ..+=..|.|.....||+..
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~ 90 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPELREGIKEFSEWPTIPQLYVNKEFIGGCDV 90 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHHHHHHHHHHHTCCSSCEEEETTEEEESHHH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHHHHHHHHHHhCCCCCCeEEECCEEEecHHH
Confidence 45688888884 678899999999999998 88999753 3333 32221 2233456777666899864
No 118
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=38.02 E-value=63 Score=31.02 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=46.7
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 586 GERVALLGYGTAV----QSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 586 G~dv~Iva~Gs~v----~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
|+.|++|.|++.. .......+.|++.|+++.++++.. -+.+.+.+.+++.+.|++ .||=...+...+.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l-----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV-----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE-----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE-----CCCCHHHHHHHHH
Confidence 6789999998863 344556667777899998888765 244555555666777664 3443335555565
Q ss_pred HcCC
Q 005820 662 QDGL 665 (676)
Q Consensus 662 ~~~~ 665 (676)
+.|+
T Consensus 99 ~~gl 102 (206)
T 3l4e_A 99 RTGA 102 (206)
T ss_dssp HHTH
T ss_pred HCCh
Confidence 5553
No 119
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=37.84 E-value=26 Score=31.01 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh---------ccCCEEEEEcCCCCCCHHHHHHHHHHHcCCCCC
Q 005820 600 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLA---------KSHEVLITVEEGSIGGFGSHVVQFLAQDGLLDG 668 (676)
Q Consensus 600 ~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~---------~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~ld~ 668 (676)
.|..|...|+..||..+.+|+.. .|--.+.+.+.. ..+-..|.+++-..||+-.... +.+.|-||.
T Consensus 18 ~c~~aK~lL~~kgV~feEidI~~-d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~~~--l~e~g~L~~ 92 (121)
T 1u6t_A 18 KQQDVLGFLEANKIGFEEKDIAA-NEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAFFE--ARENNAVYA 92 (121)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHHHH--hhhhChHHH
Confidence 35788889999999999999874 222223333332 1234567788877899875332 344554443
No 120
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=37.61 E-value=51 Score=32.03 Aligned_cols=67 Identities=9% Similarity=0.143 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHhC-CCcEEEEEccccCc---------------------CcHHHHHHHhccCCEEEEEcCCCCCCHH
Q 005820 596 TAVQSCLAASALLESN-GLRLTVADARFCKP---------------------LDHALIRSLAKSHEVLITVEEGSIGGFG 653 (676)
Q Consensus 596 s~v~~aleAa~~L~~~-Gi~v~VId~~~l~P---------------------~d~e~i~~~~~~~~~vIvvEe~~~gG~g 653 (676)
.....+..+++.|++. |.+++++|+.-+.+ -|.+.+.+.+...+.||+.=--+.+++.
T Consensus 16 ~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p 95 (242)
T 1sqs_A 16 KTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVS 95 (242)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCC
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCC
Confidence 3445555667788777 99999999875421 2344455556677877765544567777
Q ss_pred HHHHHHHHH
Q 005820 654 SHVVQFLAQ 662 (676)
Q Consensus 654 s~v~~~l~~ 662 (676)
+.+..++-.
T Consensus 96 ~~lK~~iDr 104 (242)
T 1sqs_A 96 VDTKNFIER 104 (242)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 121
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=36.39 E-value=98 Score=27.66 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=40.7
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcC
Q 005820 588 RVALLGYGT-AVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 588 dv~Iva~Gs-~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe 646 (676)
++.||..+. ....|.+..+.|++.|+.+++.+.++=.++-...-....++...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec
Confidence 677776665 45899999999999999999866542234433333334567788887753
No 122
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=34.40 E-value=1.1e+02 Score=36.32 Aligned_cols=109 Identities=12% Similarity=-0.011 Sum_probs=60.6
Q ss_pred eeccccHHHHHHHHHHHHhc----C-----C--eeEEee-chhH-HH-HHHHHHHHhhhcCCCC---EEEEeecCCCcCC
Q 005820 444 FDVGIAEQHAVTFAAGLACE----G-----L--KPFCAI-YSSF-MQ-RAYDQVVHDVDLQKLP---VRFAMDRAGLVGA 506 (676)
Q Consensus 444 id~GIaE~~~v~~A~GlA~~----G-----~--~p~~~t-~~~F-l~-ra~dqi~~~~a~~~lp---V~iv~~~~G~~G~ 506 (676)
++.+..++. +.+|.|+|++ + . .+++.+ -+.| .+ ..+|. +|.++..++| +++++..-++ |.
T Consensus 318 ~~~shlg~~-~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ea-ln~A~~~~lp~gg~I~vv~nN~~-~i 394 (933)
T 2jgd_A 318 FNPSHLEIV-SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQET-LNMSKARGYEVGGTVRIVINNQV-GF 394 (933)
T ss_dssp CCCSSTTCH-HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHH-HHHTTSTTTCCSCCEEEEEECC----
T ss_pred ccCcccccc-cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHH-HHHhhccCCCCCceEEEEEeCCc-cc
Confidence 455666664 6778888875 2 1 333333 2444 22 34554 4788899999 7777754443 32
Q ss_pred CC-CCC-----CChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---hCCCCeEEEe
Q 005820 507 DG-PTH-----CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA---IDDRPSCFRY 556 (676)
Q Consensus 507 dG-~tH-----~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~---~~~~P~~ir~ 556 (676)
.+ ++. ....+++-.-.+|.+.| .-.|+.++...++.|.+ ..++|++|-.
T Consensus 395 st~~~~~~~~~~~~~~~a~a~g~p~~~V-dG~D~~av~~a~~~A~e~~r~~~~P~lIe~ 452 (933)
T 2jgd_A 395 TTSNPLDARSTPYCTDIGKMVQAPIFHV-NADDPEAVAFVTRLALDFRNTFKRDVFIDL 452 (933)
T ss_dssp ------------CGGGGGGTTTCCEEEE-ETTCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCCCHHhcccchhHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 23 232 12233332333554444 66788889999888874 3578987744
No 123
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=32.95 E-value=15 Score=32.51 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=30.7
Q ss_pred eecCCcEEEEEechhHH--HHHHHHHHHHhCCCcEEEEEcc
Q 005820 583 LIEGERVALLGYGTAVQ--SCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 583 l~eG~dv~Iva~Gs~v~--~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+.++.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 45678999999999775 3455667899999999998743
No 124
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=32.57 E-value=58 Score=29.06 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=36.5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCc-CcHHHHHHHh
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKP-LDHALIRSLA 635 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P-~d~e~i~~~~ 635 (676)
+.+++++||-|+.+.-.+..++.|.+.|.++.++-.|+-.- +-.+.++++.
T Consensus 17 ~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~l~ 68 (142)
T 3lyu_A 17 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEKAV 68 (142)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHTTS
T ss_pred CCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHHHH
Confidence 35689999999999999999998888888888884444322 2244555443
No 125
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=32.42 E-value=73 Score=30.24 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 600 SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 600 ~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
.+..+++.|++.|.+++++|+.. +.|.+.+.+.+...+.||++=--+.+++.+.+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHH
Confidence 44455677777799999999874 6688888777788887776654455666666655543
No 126
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=29.81 E-value=1.5e+02 Score=27.14 Aligned_cols=58 Identities=19% Similarity=0.114 Sum_probs=39.2
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhCC-CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 588 RVALLGYGTAV----QSCLAASALLESNG-LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 588 dv~Iva~Gs~v----~~aleAa~~L~~~G-i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
+++|+++|+.. ..-..++++|++.. -+++++|..+.-+--...+++. +.+.+|+||.-
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~~~l~~~--~~d~lIiVDA~ 67 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIREL--RPTRLLIVDAT 67 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGHHHHHHH--CCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcC--CCCEEEEEEeC
Confidence 47899999976 34567788887652 3588999998754222333322 46889999964
No 127
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=29.72 E-value=59 Score=32.94 Aligned_cols=64 Identities=16% Similarity=0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccCcC-------c--HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 598 VQSCLAASALLESNGLRLTVADARFCKPL-------D--HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 598 v~~aleAa~~L~~~Gi~v~VId~~~l~P~-------d--~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
-..+..+++.|++.|++++++|+.-+..+ + .+.+.+.+...+.+|++=--+.+++...+..+|-
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~ID 147 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHHH
Confidence 35555677788888999999999876321 1 3345556667777776543345666666655554
No 128
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=29.59 E-value=95 Score=28.07 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred EEEechhH----HHHHHHHHHHHhCCCcEEEEEccc
Q 005820 591 LLGYGTAV----QSCLAASALLESNGLRLTVADARF 622 (676)
Q Consensus 591 Iva~Gs~v----~~aleAa~~L~~~Gi~v~VId~~~ 622 (676)
+|.|+|+. ..|...++.|++.|++++++|+..
T Consensus 4 ~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 39 (161)
T 3hly_A 4 LIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRA 39 (161)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34455555 444455566677799999998764
No 129
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=29.29 E-value=68 Score=29.70 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=38.4
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHH-------------HHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 595 GTAVQSCLAASALLESNGLRLTVADARFCKPLDHA-------------LIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e-------------~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
|..-..|...++.|++.|++++++++... +.+.- ...+.+.+.+.||+.=--+.|++...+..++.
T Consensus 17 g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld 95 (200)
T 2a5l_A 17 GATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLD 95 (200)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHH
Confidence 44445566667778778999999998764 21110 11233445666665543345666666666554
Q ss_pred H
Q 005820 662 Q 662 (676)
Q Consensus 662 ~ 662 (676)
.
T Consensus 96 ~ 96 (200)
T 2a5l_A 96 G 96 (200)
T ss_dssp T
T ss_pred H
Confidence 3
No 130
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=28.25 E-value=86 Score=28.92 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHHHHhC------CCcEEEEEccc--cCcCc--------------------HHHHHHHhccCCEEEEEcC
Q 005820 595 GTAVQSCLAASALLESN------GLRLTVADARF--CKPLD--------------------HALIRSLAKSHEVLITVEE 646 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~------Gi~v~VId~~~--l~P~d--------------------~e~i~~~~~~~~~vIvvEe 646 (676)
|..-..+...++.|++. |.+++++|+.. +.|++ .+.+.+.+...+.||++=-
T Consensus 14 ~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEec
Confidence 33445555666777765 78999999875 32221 1234455567777776654
Q ss_pred CCCCCHHHHHHHHHHH
Q 005820 647 GSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 647 ~~~gG~gs~v~~~l~~ 662 (676)
-+.+++.+.+..++-.
T Consensus 94 ~y~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 94 QYNWGYPAALKNAIDR 109 (191)
T ss_dssp CBTTBCCHHHHHHHHT
T ss_pred eECCCCCHHHHHHHHH
Confidence 4567777777777643
No 131
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=28.12 E-value=23 Score=31.91 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=27.6
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhCCCcEEEEEcc
Q 005820 586 GERVALLGYGTAVQS-CLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 586 G~dv~Iva~Gs~v~~-aleAa~~L~~~Gi~v~VId~~ 621 (676)
..|++||++|..... --+..+.|++.||.+++.|-+
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 479999999987632 234557788999999998844
No 132
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=27.92 E-value=85 Score=27.20 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEcccc
Q 005820 595 GTAVQSCLAASALLESNGLRLTVADARFC 623 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~Gi~v~VId~~~l 623 (676)
|+.-..|...++.|++.|++++++|+...
T Consensus 10 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 38 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGKDVNTINVSDV 38 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEEGGGC
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEEhhhC
Confidence 33444555555667778999999998643
No 133
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=27.83 E-value=88 Score=29.60 Aligned_cols=62 Identities=19% Similarity=0.098 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCcEEEEEccccCc---CcHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 601 CLAASALLESNGLRLTVADARFCKP---LDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 601 aleAa~~L~~~Gi~v~VId~~~l~P---~d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
+...++.+++.|.+++++|+....| .|.+...+.++.++.||+.=--+.+++.+.+..++-.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHH
Confidence 4444566777799999999987654 4666666677778877776544457777666666544
No 134
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=27.77 E-value=1.7e+02 Score=25.72 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=24.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+.++|+++|.... ..++.|.+.|.++.+|+..
T Consensus 4 ~~vlI~G~G~vG~---~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAI---NTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHH---HHHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHH---HHHHHHHHCCCCEEEEECC
Confidence 4688888877664 3556677789999999864
No 135
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=27.57 E-value=1.3e+02 Score=26.02 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEc
Q 005820 586 GERVALLGYGTAVQSCLAASALLESNGLRLTVADA 620 (676)
Q Consensus 586 G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~ 620 (676)
.+.++|+++|.... ..++.|.+.|.++.++|.
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEEC
Confidence 45789999987543 456677788999999985
No 136
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=27.42 E-value=23 Score=31.58 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=27.7
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhCCCcEEEEEcc
Q 005820 586 GERVALLGYGTAV-QSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 586 G~dv~Iva~Gs~v-~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
..|++||++|... ..--+..+.|++.||.+++.|-+
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 4799999999976 22235567788999999998843
No 137
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=27.36 E-value=1e+02 Score=29.16 Aligned_cols=64 Identities=3% Similarity=0.091 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEccccCcCcH----------HHHHHHhccCCEEEEEcCCCCCCHHHHH---HHHHH
Q 005820 598 VQSCLAASALLESNGLRLTVADARFCKPLDH----------ALIRSLAKSHEVLITVEEGSIGGFGSHV---VQFLA 661 (676)
Q Consensus 598 v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~----------e~i~~~~~~~~~vIvvEe~~~gG~gs~v---~~~l~ 661 (676)
.....+++..+.+.|++++++|+.-+-.|+. +.+++.++..+.+|++=--+.|++...+ ..++.
T Consensus 18 ~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwls 94 (190)
T 3u7r_A 18 NHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWAT 94 (190)
T ss_dssp HHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcccCCHHHHHHHHHhc
Confidence 3344445555556789999999876533332 2355666777766666543445544444 44554
No 138
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=27.14 E-value=1.5e+02 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.006 Sum_probs=34.1
Q ss_pred EEEEechhHH----HHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEEE
Q 005820 590 ALLGYGTAVQ----SCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 590 ~Iva~Gs~v~----~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vIv 643 (676)
++|.|+||.. .|...++.|+++|+++.++++..+..-|...+.+-+.+.+.+|+
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivl 325 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIF 325 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEE
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEE
Confidence 4456777663 44555666778899988888776665565555444445555554
No 139
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=26.67 E-value=1.1e+02 Score=24.24 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=38.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--ccCCEEEEEcCCCCCCHHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~~~~~vIvvEe~~~gG~gs 654 (676)
.+++.+. .....|..+...|++.|++.+.+|+..- |-..+.+.+.. .... +++++....+|+..
T Consensus 7 ~v~ly~~-~~C~~C~~~~~~L~~~~i~~~~~di~~~-~~~~~~l~~~~~~~~vP-~l~~~g~~i~g~~~ 72 (92)
T 2khp_A 7 DVIIYTR-PGCPYCARAKALLARKGAEFNEIDASAT-PELRAEMQERSGRNTFP-QIFIGSVHVGGCDD 72 (92)
T ss_dssp CEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEESTTS-HHHHHHHHHHHTSSCCC-EEEETTEEEESHHH
T ss_pred cEEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHhCCCCcC-EEEECCEEEcCHHH
Confidence 3555543 4558899999999999999999998731 11122333322 2345 44555444688654
No 140
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=26.54 E-value=77 Score=29.65 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHchhcC-CCCeEEEEEcCCcccccchHHHHHHhhhcCCCEEEEEECC
Q 005820 191 TSISAGLGMAVGRDLKG-RKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDN 247 (676)
Q Consensus 191 ~~ls~A~G~AlA~~~~~-~~~~vv~viGDGa~~eG~~~EAln~A~~~~~~li~Iv~dN 247 (676)
+.+..|+-.|+..-... ...+++.++.||.-+.+...+++..+...+.++.+|-.-+
T Consensus 92 T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~ 149 (218)
T 3ibs_A 92 TAIGEAINLATRSFTPQEGVGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGM 149 (218)
T ss_dssp CCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESC
T ss_pred CcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecC
Confidence 45666666655321111 3567999999999998866676776666555555555443
No 141
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=25.86 E-value=1.4e+02 Score=24.94 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=44.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHH---HHHHh--ccCCEEEEEcCCCCCCHHHH
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHAL---IRSLA--KSHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~---i~~~~--~~~~~vIvvEe~~~gG~gs~ 655 (676)
..|+|.+. +....|..|...|++.|+..+++|+....|-+.+. +.+.. .+.. .|.+.....||+...
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP-~ifi~g~~igG~~~~ 90 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVP-NVFVCGKHIGGCTDT 90 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSC-EEEETTEEEESHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcC-EEEECCEEEcCcHHH
Confidence 34777665 55689999999999999999999988654422332 33321 2234 456665567997654
No 142
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.51 E-value=1.4e+02 Score=25.89 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=25.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 587 ERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
..++|+++|.+... .++.|.+.|.++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 36999999987664 456677789999999954
No 143
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=25.28 E-value=73 Score=31.02 Aligned_cols=38 Identities=11% Similarity=-0.049 Sum_probs=29.1
Q ss_pred CcEEEEEechhHHHHHHHHHHHHh---CCCcEEEEEccccC
Q 005820 587 ERVALLGYGTAVQSCLAASALLES---NGLRLTVADARFCK 624 (676)
Q Consensus 587 ~dv~Iva~Gs~v~~aleAa~~L~~---~Gi~v~VId~~~l~ 624 (676)
..-++|-|||+...+.+.|+.|.+ .|++++|+++....
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~~ 80 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYR 80 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCC
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccCC
Confidence 344567799999999988887754 48889999877543
No 144
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=25.21 E-value=97 Score=28.07 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=22.4
Q ss_pred EEEEechhH----HHHHHHHHHHHhCCCcEEEEEcccc
Q 005820 590 ALLGYGTAV----QSCLAASALLESNGLRLTVADARFC 623 (676)
Q Consensus 590 ~Iva~Gs~v----~~aleAa~~L~~~Gi~v~VId~~~l 623 (676)
++|.|+|+. ..|...++.|++.|++++++|+...
T Consensus 7 v~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 7 IGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp EEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 344455555 4445556667778999999998754
No 145
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=24.90 E-value=1.2e+02 Score=29.78 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=33.5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHH
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSL 634 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~ 634 (676)
.+++++||+.|.. ++|.|..|.+.|.+|+++....-.+.+.+...+.
T Consensus 151 ~~~~vvViGgG~i---g~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~ 197 (314)
T 4a5l_A 151 RNKVLMVVGGGDA---AMEEALHLTKYGSKVIILHRRDAFRASKTMQERV 197 (314)
T ss_dssp TTSEEEEECSSHH---HHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHH
T ss_pred CCCeEEEECCChH---HHHHHHHHHHhCCeeeeecccccccccchhhhhh
Confidence 3678999998874 6778888988999999997554444444444333
No 146
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=24.89 E-value=1.5e+02 Score=22.57 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=42.3
Q ss_pred EEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHh--ccCCEEEEEcCCCCCCHHHHHHHHHHHcCCC
Q 005820 589 VALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLA--KSHEVLITVEEGSIGGFGSHVVQFLAQDGLL 666 (676)
Q Consensus 589 v~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~--~~~~~vIvvEe~~~gG~gs~v~~~l~~~~~l 666 (676)
+++.+. .....|..+...|++.|++.+.+|+..- |-..+.+.+.. .+... ++++....+|+. .|.++ .+.|.|
T Consensus 3 i~~y~~-~~C~~C~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~-l~~~g~~i~g~~-~i~~~-~~~g~l 77 (82)
T 1fov_A 3 VEIYTK-ETCPYCHRAKALLSSKGVSFQELPIDGN-AAKREEMIKRSGRTTVPQ-IFIDAQHIGGYD-DLYAL-DARGGL 77 (82)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCCEEEECTTC-SHHHHHHHHHHSSCCSCE-EEETTEEEESHH-HHHHH-HHTTCS
T ss_pred EEEEEC-CCChhHHHHHHHHHHCCCCcEEEECCCC-HHHHHHHHHHhCCCCcCE-EEECCEEEeCHH-HHHHH-HHCCCH
Confidence 455443 4457888888889888999999998741 21112233322 23344 445544478864 45544 455544
Q ss_pred C
Q 005820 667 D 667 (676)
Q Consensus 667 d 667 (676)
+
T Consensus 78 ~ 78 (82)
T 1fov_A 78 D 78 (82)
T ss_dssp H
T ss_pred H
Confidence 3
No 147
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=23.46 E-value=24 Score=31.69 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=29.4
Q ss_pred eecCCcEEEEEechhHH-HHHHHHHHHHhCCCcEEEEEcc
Q 005820 583 LIEGERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 583 l~eG~dv~Iva~Gs~v~-~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+..+.|++||++|.... .--+..+.|++.||.+++.|-+
T Consensus 61 l~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 61 LALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp HHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred HhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 34568999999999763 2234557788899999998843
No 148
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=23.08 E-value=33 Score=31.53 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.0
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhCCCcEEEEEcc
Q 005820 586 GERVALLGYGTAVQ-SCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 586 G~dv~Iva~Gs~v~-~aleAa~~L~~~Gi~v~VId~~ 621 (676)
..|++||++|.... .--+..+.|++.||.+++.|-.
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~ 124 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQ 124 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 56999999999763 3335567789999999998843
No 149
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=22.79 E-value=1.1e+02 Score=28.18 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.7
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhC-C--CcEEEEEccccCcCcHHHHHHHhccCCEEEEEcCC
Q 005820 588 RVALLGYGTAV----QSCLAASALLESN-G--LRLTVADARFCKPLDHALIRSLAKSHEVLITVEEG 647 (676)
Q Consensus 588 dv~Iva~Gs~v----~~aleAa~~L~~~-G--i~v~VId~~~l~P~d~e~i~~~~~~~~~vIvvEe~ 647 (676)
+++|+++|+.. ..-..++++|++. . -+++++|..+.-+ +.+ ..+...+.+|+||.-
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~p~~v~vid~gt~~~---~l~-~~l~~~d~lIiVDA~ 64 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGM---ELL-GDMANRDHLIIADAI 64 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEECCTTEEEEEEETCCG---GGH-HHHSSCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCCCCeEEEECCCCHH---HHH-HHHhCCCEEEEEEeh
Confidence 47899999975 3455677888763 2 3699999998643 334 345567899999974
No 150
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=22.09 E-value=55 Score=30.47 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCcEEEEEccccCcC-----------cHHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHHH
Q 005820 603 AASALLESNGLRLTVADARFCKPL-----------DHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLAQ 662 (676)
Q Consensus 603 eAa~~L~~~Gi~v~VId~~~l~P~-----------d~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~~ 662 (676)
.+++.|+ .|.+++++|+..+..+ |.+.+.+.+...+.||+.=--+.+++...+..++-.
T Consensus 28 ~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 28 EAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHHHHHH
T ss_pred HHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHHHHHH
Confidence 3344444 5788999998764322 223344555667777765443456666666555543
No 151
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=22.06 E-value=2.2e+02 Score=33.45 Aligned_cols=76 Identities=12% Similarity=-0.002 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcCCCC---EEEEeecCCCcCCCCCCC-----CChhhHhHhhcCCCCEEEecCCHHHHHHHHHHHHH---
Q 005820 478 RAYDQVVHDVDLQKLP---VRFAMDRAGLVGADGPTH-----CGSFDVTFMACLPNMVVMAPSDEAELFHMVATAAA--- 546 (676)
Q Consensus 478 ra~dqi~~~~a~~~lp---V~iv~~~~G~~G~dG~tH-----~~~~d~a~~~~iP~l~V~~Psd~~E~~~~~~~al~--- 546 (676)
..++. ++.++..++| +++++..-++ |..+++. ....+.+-.-.+|.+.| .=.|+.++...++.|++
T Consensus 294 ~v~Ea-ln~A~~~~lp~g~vi~iv~NN~~-g~st~~~~~~s~~~~~~~a~a~G~p~~~V-dG~D~~av~~a~~~A~~~ar 370 (868)
T 2yic_A 294 VVAET-LNLALLRGYRTGGTIHIVVNNQI-GFTTAPTDSRSSEYCTDVAKMIGAPIFHV-NGDDPEACAWVARLAVDFRQ 370 (868)
T ss_dssp HHHHH-HTTTTCTTTCCSCCEEEEEECSC-BTTBCHHHHCSSSSTTGGGGGGTCCEEEE-ETTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHhcCCCCCCeEEEEEcCCc-ccccCccccccccCHHHHHHhCCCcEEEE-eCCCHHHHHHHHHHHHHHHH
Confidence 33443 5788899998 8888865553 3323221 12334433334555443 44589999999998875
Q ss_pred hCCCCeEEEe
Q 005820 547 IDDRPSCFRY 556 (676)
Q Consensus 547 ~~~~P~~ir~ 556 (676)
..++|++|-.
T Consensus 371 ~~~~PvlIe~ 380 (868)
T 2yic_A 371 AFKKDVVIDM 380 (868)
T ss_dssp HHCCCEEEEE
T ss_pred hCCCCEEEEE
Confidence 3578998855
No 152
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=21.54 E-value=1.5e+02 Score=25.46 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhcc
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKS 637 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~ 637 (676)
+....|..|.+.|++.|+..+++|+.. .|.+.+.+.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~ 48 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSY 48 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhh
Confidence 456789999999999999999999874 57788888887653
No 153
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=21.47 E-value=1.6e+02 Score=31.32 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=26.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 586 GERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 586 G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+..|+|+++|..... .++.|.+.|+++.|||..
T Consensus 4 ~~~viIiG~Gr~G~~---va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQI---TGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp CCSEEEECCSHHHHH---HHHHHHHTTCCEEEEECC
T ss_pred CCeEEEECCCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 346999999987664 556788899999999954
No 154
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=21.46 E-value=1.7e+02 Score=23.64 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=39.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCc---EEEEEccccC--cCcHHHHHHHh--ccCCEEEEEcCCCCCCHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLR---LTVADARFCK--PLDHALIRSLA--KSHEVLITVEEGSIGGFG 653 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~---v~VId~~~l~--P~d~e~i~~~~--~~~~~vIvvEe~~~gG~g 653 (676)
.+++++. +....|..+...|++.+++ ..++|+..-. |--.+.+.+.. ..... |+++....||+.
T Consensus 13 ~v~~f~~-~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~-i~~~g~~i~g~~ 83 (105)
T 1kte_A 13 KVVVFIK-PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPR-VFIGKECIGGCT 83 (105)
T ss_dssp CEEEEEC-SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCE-EEETTEEEESHH
T ss_pred CEEEEEc-CCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCe-EEECCEEEeccH
Confidence 4666553 5558899999999999999 9999987431 10012333332 23344 456654578864
No 155
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=21.38 E-value=1.7e+02 Score=24.90 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=21.1
Q ss_pred EEEechhHH----HHHHHHHHHHhCCCcEEEEEcccc
Q 005820 591 LLGYGTAVQ----SCLAASALLESNGLRLTVADARFC 623 (676)
Q Consensus 591 Iva~Gs~v~----~aleAa~~L~~~Gi~v~VId~~~l 623 (676)
+|-|+|... .|...++.|++.|++++++++...
T Consensus 3 ~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~ 39 (137)
T 2fz5_A 3 EIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT 39 (137)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC
T ss_pred EEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC
Confidence 444555544 444445556667999999997643
No 156
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=20.96 E-value=1e+02 Score=31.79 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=39.4
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc----------------ccCc---CcHHHHHHHhccCCEEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR----------------FCKP---LDHALIRSLAKSHEVLIT 643 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~----------------~l~P---~d~e~i~~~~~~~~~vIv 643 (676)
+|+.++||+.|.++... ++..|...|..|+|.|.. +..+ .+.+.+.+.++..+.||+
T Consensus 176 ~gk~vvVIG~G~iVG~~--~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRP--LAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TTCEEEEECCCTTTHHH--HHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEECCCcchHHH--HHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 46789999999887654 566677788888888642 1111 233667778888887764
No 157
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=20.64 E-value=1e+02 Score=31.25 Aligned_cols=50 Identities=16% Similarity=0.326 Sum_probs=31.7
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccCCEEE
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSHEVLI 642 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~~~vI 642 (676)
+|+.++||+.|..+... ++..|...|..|++.+-++ +.+.+.++..+.||
T Consensus 159 ~Gk~vvVvGrs~iVG~p--~A~lL~~~gAtVtv~h~~t------~~L~~~~~~ADIVI 208 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRP--MATMLLNAGATVSVCHIKT------KDLSLYTRQADLII 208 (285)
T ss_dssp TTCEEEEECCCTTTHHH--HHHHHHHTTCEEEEECTTC------SCHHHHHTTCSEEE
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCeEEEEeCCc------hhHHHHhhcCCEEE
Confidence 46688888888877654 4445666788888877543 12344555555444
No 158
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=20.62 E-value=1.3e+02 Score=26.01 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhccC
Q 005820 596 TAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAKSH 638 (676)
Q Consensus 596 s~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~~~ 638 (676)
+....|..|.+.|++.|+..+++|+.. .|.+.+.+.++++..
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~ 52 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENS 52 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHc
Confidence 455789999999999999999999874 688899888887654
No 159
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=20.60 E-value=2e+02 Score=24.00 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=40.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhCCCc---EEEEEccccCcC---cHHHHHHHh--ccCCEEEEEcCCCCCCHHH
Q 005820 588 RVALLGYGTAVQSCLAASALLESNGLR---LTVADARFCKPL---DHALIRSLA--KSHEVLITVEEGSIGGFGS 654 (676)
Q Consensus 588 dv~Iva~Gs~v~~aleAa~~L~~~Gi~---v~VId~~~l~P~---d~e~i~~~~--~~~~~vIvvEe~~~gG~gs 654 (676)
.+++++. +....|..+...|++.|++ ...+|+..- |= ..+.+.+.. ..... |+++....||+..
T Consensus 20 ~vv~f~~-~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~-~~~~~~~~~l~~~~g~~~vP~-v~i~g~~igg~~~ 91 (114)
T 2hze_A 20 KVTIFVK-YTCPFCRNALDILNKFSFKRGAYEIVDIKEF-KPENELRDYFEQITGGKTVPR-IFFGKTSIGGYSD 91 (114)
T ss_dssp CEEEEEC-TTCHHHHHHHHHHTTSCBCTTSEEEEEGGGS-SSHHHHHHHHHHHHSCCSSCE-EEETTEEEESHHH
T ss_pred CEEEEEe-CCChhHHHHHHHHHHcCCCcCceEEEEccCC-CChHHHHHHHHHHhCCCCcCE-EEECCEEEeCcHH
Confidence 4666554 5568899999999999999 999998643 20 012333332 23454 4565444788753
No 160
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=20.60 E-value=3.2e+02 Score=22.80 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=43.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHH----HHHHHh-ccCCEEEEEcCCCCCCHHHH
Q 005820 586 GERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHA----LIRSLA-KSHEVLITVEEGSIGGFGSH 655 (676)
Q Consensus 586 G~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e----~i~~~~-~~~~~vIvvEe~~~gG~gs~ 655 (676)
...|+|.+. +....|..|.+.|++.|+..+++|+.... |.+ .+.+.. ..+=..|.+.....||+...
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l 87 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence 346777665 56688999999999999999999987431 222 232322 12223556665457997643
No 161
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=20.42 E-value=1.6e+02 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHhCCCcEEEEEcccc
Q 005820 595 GTAVQSCLAASALLESNGLRLTVADARFC 623 (676)
Q Consensus 595 Gs~v~~aleAa~~L~~~Gi~v~VId~~~l 623 (676)
|+.-..|...++.|++.|++++++++...
T Consensus 13 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T 3f6r_A 13 GNTESIAQKLEELIAAGGHEVTLLNAADA 41 (148)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETTTB
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEehhhC
Confidence 33344555555666677999999998754
No 162
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=20.41 E-value=84 Score=31.80 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=22.1
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEcc
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADAR 621 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~ 621 (676)
+|+.++||+.|..+... ++..|...|..|++.+-+
T Consensus 149 ~Gk~vvVvG~s~iVG~p--lA~lL~~~gAtVtv~~~~ 183 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRP--LSMMLLNRNYTVSVCHSK 183 (276)
T ss_dssp CSCEEEEECCCTTTHHH--HHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEEcCChHHHHH--HHHHHHHCCCeEEEEeCC
Confidence 35577788877666543 344455667777777644
No 163
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=20.38 E-value=2e+02 Score=28.16 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=34.7
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHHhCCCcEEEEEccccCcCcHHHHHHHhc
Q 005820 585 EGERVALLGYGTAVQSCLAASALLESNGLRLTVADARFCKPLDHALIRSLAK 636 (676)
Q Consensus 585 eG~dv~Iva~Gs~v~~aleAa~~L~~~Gi~v~VId~~~l~P~d~e~i~~~~~ 636 (676)
.++.++||+.|. .+++.+..|.+.|.+|+++....--+++.+...++.+
T Consensus 142 ~~~~v~VvG~G~---~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~ 190 (311)
T 2q0l_A 142 KNKEVAVLGGGD---TAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKN 190 (311)
T ss_dssp TTSEEEEECCSH---HHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHT
T ss_pred CCCEEEEECCCH---HHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhh
Confidence 356899998775 4566777888889999999865433566666655543
No 164
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=20.21 E-value=1.6e+02 Score=27.35 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEccccCcCc----------HHHHHHHhccCCEEEEEcCCCCCCHHHHHHHHHH
Q 005820 599 QSCLAASALLESNGLRLTVADARFCKPLD----------HALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLA 661 (676)
Q Consensus 599 ~~aleAa~~L~~~Gi~v~VId~~~l~P~d----------~e~i~~~~~~~~~vIvvEe~~~gG~gs~v~~~l~ 661 (676)
..+..+++.++ .|.+++++|+.-+-.++ .+.+.+.+...+.+|+.=--+.+++.+.+..++-
T Consensus 20 ~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD 91 (192)
T 3fvw_A 20 QLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLD 91 (192)
T ss_dssp HHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHH
Confidence 44445556665 68999999998642222 2345566677888887765456666666555543
Done!