BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005822
(675 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G SGGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNSGGALVNLNGELIGINT 226
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G SGGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNSGGALVNLNGELIGINT 226
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G SGGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNSGGALVNLNGELIGINT 226
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G +GGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNAGGALVNLNGELIGINT 226
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G +GGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNAGGALVNLNGELIGINT 226
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G +GGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNAGGALVNLNGELIGINT 226
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G +GGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNAGGALVNLNGELIGINT 226
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y ++T AA++ G +GGA+VNL+G +IG+ T
Sbjct: 195 YENFIQTDAAINRGNAGGALVNLNGELIGINT 226
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T AA++PG SGGA+VN G +IG+ T
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINT 221
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T AA++PG SGGA+VN G +IG+ T
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINT 221
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T AA++PG +GGA+VN G +IG+ T
Sbjct: 194 IQTDAAINPGNAGGALVNAKGELIGINT 221
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 597 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Y +++T AA++PG SGG ++N+ G +IG+ T
Sbjct: 168 YVGLIQTDAAINPGNSGGPLLNIHGEVIGINT 199
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 217 VAILGVSSYLKDLPNIALTPLNKR--GDLLLAVGSPFGVLSPMHFFNSVSMG--SVANCY 272
+A++ + + K P + +K G+ +A+G+P G F ++V++G S N
Sbjct: 105 IAVIKIKASDKKFPYLEFGDSDKVKIGEWAIAIGNPLG------FQHTVTVGVVSATNRR 158
Query: 273 PPRSTTRS----LLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEA 328
P+ L+ D PG GGP+ H +GI + + + IP
Sbjct: 159 IPKPDGSGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINT 218
Query: 329 IATACSDLLLKE 340
+ +L ++
Sbjct: 219 VKKFLDTILTQK 230
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++PG SGGA+VN G ++G+ T F S
Sbjct: 175 LQTDASINPGNSGGALVNSLGELMGINTLSFDKS 208
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++PG SGGA+VN G ++G+ T F S
Sbjct: 175 LQTDASINPGNSGGALVNSLGELMGINTLSFDKS 208
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++PG SGGA+VN G ++G+ T F S
Sbjct: 175 LQTDASINPGNSGGALVNSLGELMGINTLSFDKS 208
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRY------FKLSCLKMSKFM 642
++T A ++ G SGG +VNLDG +IG+ T F + K+ KF+
Sbjct: 161 IQTDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFL 208
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 593 RNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTRY------FKLSCLKMSKFM 642
RNS ++T A ++ G SGG +VNLDG +IG+ T F + K+ KF+
Sbjct: 154 RNSDMD-YIQTDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFL 208
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRY------FKLSCLKMSKFM 642
++T A ++ G SGG +VNLDG +IG+ T F + K+ KF+
Sbjct: 178 IQTDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFL 225
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLSC 635
++T AA++PG SGGA+VN + ++G+ + L
Sbjct: 158 IQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGA 192
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 234 LTPLNKRGDLLLAVGSP-FGVLSPMHFFNSVSMGSVANCYPPRSTTR---------SLLM 283
LTP++ L VG P + SP+ +V+ G V+ P STT +
Sbjct: 100 LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQNTVLDAIQ 159
Query: 284 ADIRCLPGMEGGPVFGEHAHFVGI 307
D PG GG + +A VG+
Sbjct: 160 TDAAINPGNSGGALVNXNAQLVGV 183
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 600 MLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T A+++ G SGGA++NL+G +IG+ T
Sbjct: 175 FIQTDASINRGNSGGALLNLNGELIGINT 203
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 600 MLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T A+++ G SGGA++NL+G +IG+ T
Sbjct: 175 FIQTDASINRGNSGGALLNLNGELIGINT 203
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 217 VAILGVSS--YLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVA----N 270
+A+L V S + K + L L + D + VG P G + SV+ G V+
Sbjct: 123 IALLSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTI-----SVTKGVVSRIEVT 177
Query: 271 CYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIA 330
Y S+ + D PG GGP F + +G+ + R + I VIP ++
Sbjct: 178 SYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVS 237
Query: 331 TACSD 335
+D
Sbjct: 238 HFLTD 242
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRY------FKLSCLKMSKFM 642
++T A ++ G +GG +VNLDG +IG+ T F + K+ KF+
Sbjct: 161 IQTDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFL 208
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 592 QRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVT 628
Q N Y ++T AA+ G +GG +VNLDG +IG+ T
Sbjct: 156 QTNVEY---IQTDAAIDFGNAGGPLVNLDGEVIGVNT 189
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++PG GGA+VN G ++G+ T F S
Sbjct: 175 LQTDASINPGNXGGALVNSLGELMGINTLSFDKS 208
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 23/28 (82%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T A+++ G +GGA++NL+G +IG+ T
Sbjct: 176 IQTDASINRGNAGGALLNLNGELIGINT 203
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRY------FKLSCLKMSKFM 642
++T A ++ G +GG +VNLDG +IG+ T F + K+ KF+
Sbjct: 178 IQTDAIINYGNAGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFL 225
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVT 628
++T AA+ G SGGA+VN G +IG+ T
Sbjct: 194 IQTDAAIGGGNSGGALVNAKGELIGINT 221
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 149 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 182
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 600 MLETTAAVHPGGSGGAVVNLDGHMIGLVTRYF 631
+++T AA++PG SGG +++ G +IG+ T +
Sbjct: 168 VIQTDAAINPGNSGGPLLDSSGTLIGINTAIY 199
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 165 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 198
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 177 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 210
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 175 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 208
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 177 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 210
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 175 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 208
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 154 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 187
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 149 LQTDASINHGNSGGALVNSLGELMGINTLSFDKS 182
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 600 MLETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G + G+ T F S
Sbjct: 176 FLQTDASINHGNSGGALVNSLGELXGINTLSFDKS 210
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 600 MLETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L+T A+++ G SGGA+VN G + G+ T F S
Sbjct: 148 FLQTDASINHGNSGGALVNSLGELXGINTLSFDKS 182
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 601 LETTAAVHPGGSGGAVVNLDGHMIGLVTRYFKLS 634
L T A+++ G SGGA+VN G ++G+ T F S
Sbjct: 177 LATDASINHGNSGGALVNSLGELMGINTLSFDKS 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,470,557
Number of Sequences: 62578
Number of extensions: 790998
Number of successful extensions: 1626
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1515
Number of HSP's gapped (non-prelim): 116
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)