Query 005823
Match_columns 675
No_of_seqs 389 out of 2442
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 14:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02730 carot_isom carotene 100.0 2.1E-60 4.5E-65 530.9 53.9 493 158-652 1-493 (493)
2 TIGR02734 crtI_fam phytoene de 100.0 4.4E-53 9.4E-58 474.1 52.1 478 160-655 1-496 (502)
3 TIGR02733 desat_CrtD C-3',4' d 100.0 2E-52 4.3E-57 467.3 52.1 474 158-650 2-491 (492)
4 KOG4254 Phytoene desaturase [C 100.0 4.8E-54 1E-58 437.0 30.7 497 155-663 12-558 (561)
5 COG1233 Phytoene dehydrogenase 100.0 8.2E-47 1.8E-51 418.2 38.4 469 156-651 2-483 (487)
6 PLN02612 phytoene desaturase 100.0 3E-32 6.5E-37 306.9 44.8 438 155-653 91-550 (567)
7 PLN02487 zeta-carotene desatur 100.0 1.1E-31 2.4E-36 298.7 41.4 471 131-652 46-554 (569)
8 PRK07233 hypothetical protein; 100.0 1.4E-31 3E-36 295.1 38.8 419 159-652 1-432 (434)
9 TIGR02732 zeta_caro_desat caro 100.0 1.2E-30 2.6E-35 288.5 36.7 444 159-648 1-474 (474)
10 PRK11883 protoporphyrinogen ox 100.0 7.6E-30 1.7E-34 282.8 33.6 424 158-650 1-451 (451)
11 TIGR00562 proto_IX_ox protopor 100.0 1.2E-29 2.6E-34 282.0 31.5 423 157-651 2-460 (462)
12 TIGR02731 phytoene_desat phyto 100.0 2.7E-28 5.7E-33 270.3 40.8 424 159-647 1-452 (453)
13 PRK12416 protoporphyrinogen ox 100.0 3.7E-28 8E-33 269.9 37.7 426 158-651 2-461 (463)
14 PRK07208 hypothetical protein; 100.0 1.4E-27 3.1E-32 266.5 33.4 427 155-651 2-461 (479)
15 PLN02268 probable polyamine ox 100.0 9.2E-28 2E-32 264.6 30.6 418 158-651 1-434 (435)
16 COG1232 HemY Protoporphyrinoge 100.0 7.9E-28 1.7E-32 256.9 28.7 417 159-648 2-443 (444)
17 PLN02576 protoporphyrinogen ox 100.0 2.4E-27 5.3E-32 265.7 33.1 427 155-652 10-488 (496)
18 PLN02676 polyamine oxidase 100.0 7.9E-27 1.7E-31 258.3 35.4 430 155-655 24-477 (487)
19 PLN02529 lysine-specific histo 100.0 5.4E-26 1.2E-30 257.8 37.1 418 155-653 158-600 (738)
20 PLN02568 polyamine oxidase 100.0 2.3E-26 5.1E-31 256.2 32.2 447 156-652 4-536 (539)
21 TIGR03467 HpnE squalene-associ 100.0 1.4E-25 3E-30 246.2 34.7 402 171-648 1-418 (419)
22 PLN02328 lysine-specific histo 99.9 1.4E-25 3E-30 255.4 33.1 419 155-654 236-682 (808)
23 PF01593 Amino_oxidase: Flavin 99.9 3.6E-26 7.9E-31 251.0 26.6 229 389-648 212-450 (450)
24 PLN03000 amine oxidase 99.9 6.8E-25 1.5E-29 249.2 36.4 422 156-653 183-625 (881)
25 PLN02976 amine oxidase 99.9 1.7E-23 3.8E-28 242.7 41.2 455 154-656 690-1191(1713)
26 COG1231 Monoamine oxidase [Ami 99.9 5.2E-24 1.1E-28 221.9 28.8 421 155-652 5-448 (450)
27 KOG0029 Amine oxidase [Seconda 99.9 2.3E-23 4.9E-28 228.2 30.4 432 155-652 13-460 (501)
28 KOG0685 Flavin-containing amin 99.9 4.4E-23 9.6E-28 214.4 23.7 438 156-653 20-493 (498)
29 COG3349 Uncharacterized conser 99.9 7.9E-21 1.7E-25 202.1 21.7 442 158-656 1-468 (485)
30 COG3380 Predicted NAD/FAD-depe 99.8 4.2E-20 9.1E-25 178.5 15.6 327 158-651 2-331 (331)
31 PTZ00363 rab-GDP dissociation 99.8 3E-18 6.4E-23 186.2 30.8 326 155-535 2-360 (443)
32 KOG1276 Protoporphyrinogen oxi 99.8 2.1E-16 4.6E-21 162.2 28.9 434 155-648 9-490 (491)
33 PF01266 DAO: FAD dependent ox 99.7 1.6E-16 3.5E-21 170.0 21.2 217 376-646 134-358 (358)
34 COG2907 Predicted NAD/FAD-bind 99.7 2.7E-15 5.9E-20 149.9 21.6 287 155-484 6-309 (447)
35 TIGR03329 Phn_aa_oxid putative 99.6 3.9E-14 8.4E-19 157.1 26.4 65 376-443 170-237 (460)
36 PRK13977 myosin-cross-reactive 99.6 1E-12 2.2E-17 144.4 36.0 72 155-232 20-97 (576)
37 PRK11259 solA N-methyltryptoph 99.6 1E-13 2.2E-18 150.1 27.6 219 377-650 137-360 (376)
38 TIGR01377 soxA_mon sarcosine o 99.6 2.3E-13 4.9E-18 147.5 27.9 65 377-443 133-200 (380)
39 PRK00711 D-amino acid dehydrog 99.6 3.2E-13 7E-18 148.2 28.1 68 376-444 188-258 (416)
40 TIGR01373 soxB sarcosine oxida 99.6 6E-13 1.3E-17 145.6 28.8 209 377-650 171-385 (407)
41 PRK12409 D-amino acid dehydrog 99.6 1E-12 2.2E-17 143.9 29.1 68 376-444 184-259 (410)
42 COG2081 Predicted flavoprotein 99.5 2E-13 4.4E-18 140.9 17.6 64 376-440 100-164 (408)
43 PRK01747 mnmC bifunctional tRN 99.5 4.1E-12 8.8E-17 147.2 27.6 66 376-443 395-463 (662)
44 COG0644 FixC Dehydrogenases (f 99.5 1.2E-11 2.7E-16 134.5 27.1 65 387-451 96-160 (396)
45 KOG2820 FAD-dependent oxidored 99.5 8E-12 1.7E-16 125.1 22.2 64 386-451 153-218 (399)
46 PRK10157 putative oxidoreducta 99.5 2.6E-11 5.6E-16 133.2 28.2 62 387-449 109-170 (428)
47 COG0665 DadA Glycine/D-amino a 99.5 3.4E-11 7.3E-16 130.8 27.8 67 376-444 143-213 (387)
48 PF03486 HI0933_like: HI0933-l 99.4 3E-12 6.6E-17 138.0 15.6 66 377-442 99-165 (409)
49 TIGR02032 GG-red-SF geranylger 99.4 3.3E-10 7.2E-15 117.9 28.8 63 387-450 92-155 (295)
50 PF13450 NAD_binding_8: NAD(P) 99.4 1.7E-12 3.6E-17 103.2 8.2 68 162-232 1-68 (68)
51 PRK10015 oxidoreductase; Provi 99.3 8.3E-10 1.8E-14 121.2 29.7 62 387-449 109-170 (429)
52 PRK08773 2-octaprenyl-3-methyl 99.3 3.3E-10 7.2E-15 123.3 24.7 63 387-450 114-176 (392)
53 TIGR01988 Ubi-OHases Ubiquinon 99.3 4.1E-10 8.9E-15 122.1 25.4 63 387-450 107-170 (385)
54 PLN02697 lycopene epsilon cycl 99.3 1.4E-09 3E-14 121.0 29.6 56 387-443 193-248 (529)
55 PRK06847 hypothetical protein; 99.3 1.8E-09 3.9E-14 116.8 30.1 62 387-449 108-169 (375)
56 COG0654 UbiH 2-polyprenyl-6-me 99.3 1.8E-09 3.9E-14 117.2 30.0 63 387-450 105-169 (387)
57 KOG2844 Dimethylglycine dehydr 99.3 5.1E-10 1.1E-14 121.0 24.3 70 374-444 172-244 (856)
58 COG1635 THI4 Ribulose 1,5-bisp 99.3 4.7E-11 1E-15 113.0 14.3 41 157-197 30-70 (262)
59 PRK06185 hypothetical protein; 99.3 3.9E-10 8.5E-15 123.4 24.1 64 387-450 109-176 (407)
60 PF00996 GDI: GDP dissociation 99.3 2E-10 4.4E-15 123.6 20.7 324 155-534 2-358 (438)
61 COG0579 Predicted dehydrogenas 99.3 9.9E-11 2.1E-15 125.1 17.3 69 376-444 140-212 (429)
62 PRK07364 2-octaprenyl-6-methox 99.3 1.1E-09 2.3E-14 120.3 25.9 63 387-450 122-188 (415)
63 TIGR00031 UDP-GALP_mutase UDP- 99.3 7.5E-11 1.6E-15 125.6 16.0 237 158-443 2-247 (377)
64 PRK09126 hypothetical protein; 99.3 3.9E-10 8.4E-15 122.8 21.8 62 388-450 112-174 (392)
65 PRK11728 hydroxyglutarate oxid 99.3 7.2E-11 1.6E-15 128.5 15.9 66 376-443 136-204 (393)
66 PRK11101 glpA sn-glycerol-3-ph 99.3 4.3E-11 9.2E-16 135.2 14.3 69 376-444 137-212 (546)
67 TIGR01984 UbiH 2-polyprenyl-6- 99.2 1.6E-09 3.4E-14 117.5 25.1 63 387-450 106-169 (382)
68 PLN02463 lycopene beta cyclase 99.2 2.8E-09 6E-14 116.8 26.8 56 387-444 115-170 (447)
69 TIGR02028 ChlP geranylgeranyl 99.2 3.1E-09 6.7E-14 115.7 26.6 36 158-193 1-36 (398)
70 PLN00093 geranylgeranyl diphos 99.2 9.4E-09 2E-13 113.2 30.4 36 155-190 37-72 (450)
71 PRK07045 putative monooxygenas 99.2 1.8E-09 3.9E-14 117.4 24.3 62 387-448 107-170 (388)
72 PRK04176 ribulose-1,5-biphosph 99.2 2.2E-10 4.7E-15 116.5 15.4 59 387-445 105-175 (257)
73 TIGR03364 HpnW_proposed FAD de 99.2 1.8E-10 3.8E-15 124.2 15.6 62 376-443 132-197 (365)
74 PRK05714 2-octaprenyl-3-methyl 99.2 3.9E-09 8.6E-14 115.4 26.4 64 387-451 113-176 (405)
75 PTZ00383 malate:quinone oxidor 99.2 1.3E-10 2.8E-15 128.6 14.4 67 377-444 198-274 (497)
76 PRK08244 hypothetical protein; 99.2 4.9E-09 1.1E-13 117.6 26.6 63 387-450 101-166 (493)
77 TIGR00292 thiazole biosynthesi 99.2 4.4E-10 9.5E-15 113.9 16.3 59 387-445 101-172 (254)
78 PRK07608 ubiquinone biosynthes 99.2 6.6E-09 1.4E-13 112.9 26.7 62 387-450 112-174 (388)
79 PRK08020 ubiF 2-octaprenyl-3-m 99.2 9.7E-09 2.1E-13 111.8 28.0 63 387-450 113-176 (391)
80 TIGR02023 BchP-ChlP geranylger 99.2 8.3E-09 1.8E-13 112.2 27.1 62 387-450 93-162 (388)
81 PRK06481 fumarate reductase fl 99.2 8.3E-10 1.8E-14 123.8 19.6 58 386-443 190-251 (506)
82 PRK08013 oxidoreductase; Provi 99.2 5.2E-09 1.1E-13 114.2 25.3 63 387-450 112-175 (400)
83 PRK07588 hypothetical protein; 99.2 5.2E-09 1.1E-13 113.9 25.0 61 387-449 104-164 (391)
84 PRK07333 2-octaprenyl-6-methox 99.2 4.2E-09 9.2E-14 115.1 24.2 63 387-450 112-174 (403)
85 PRK07494 2-octaprenyl-6-methox 99.2 4.2E-09 9.2E-14 114.5 23.4 63 387-450 112-174 (388)
86 PRK12845 3-ketosteroid-delta-1 99.2 2.2E-09 4.8E-14 121.3 21.5 63 381-444 213-279 (564)
87 PF01946 Thi4: Thi4 family; PD 99.2 3.2E-10 6.8E-15 108.4 12.2 42 156-197 16-57 (230)
88 PRK08274 tricarballylate dehyd 99.2 1.2E-09 2.5E-14 121.8 18.8 62 382-443 127-192 (466)
89 PF00890 FAD_binding_2: FAD bi 99.1 1.5E-09 3.2E-14 119.2 19.2 60 384-443 139-203 (417)
90 KOG2853 Possible oxidoreductas 99.1 5.3E-09 1.1E-13 104.8 20.4 79 552-650 404-482 (509)
91 PRK05732 2-octaprenyl-6-methox 99.1 1E-08 2.2E-13 111.7 25.0 62 388-450 114-176 (395)
92 PRK06183 mhpA 3-(3-hydroxyphen 99.1 2E-08 4.4E-13 113.8 28.1 62 388-450 115-181 (538)
93 TIGR01790 carotene-cycl lycope 99.1 2.7E-08 5.8E-13 108.2 27.0 56 387-443 86-141 (388)
94 PRK08850 2-octaprenyl-6-methox 99.1 2E-08 4.4E-13 109.8 26.1 62 388-450 113-175 (405)
95 PRK08132 FAD-dependent oxidore 99.1 6.8E-08 1.5E-12 109.8 31.2 64 388-451 127-193 (547)
96 COG0578 GlpA Glycerol-3-phosph 99.1 6.6E-10 1.4E-14 121.1 13.8 68 376-444 152-226 (532)
97 COG0493 GltD NADPH-dependent g 99.1 1.3E-10 2.9E-15 126.3 8.4 117 107-236 74-190 (457)
98 TIGR02352 thiamin_ThiO glycine 99.1 1.1E-08 2.4E-13 108.8 22.2 208 376-649 124-335 (337)
99 PRK12779 putative bifunctional 99.1 1.3E-10 2.8E-15 137.7 7.5 93 107-203 252-351 (944)
100 TIGR01320 mal_quin_oxido malat 99.1 1.8E-09 4E-14 119.7 15.9 68 376-444 165-241 (483)
101 COG2509 Uncharacterized FAD-de 99.1 2.7E-08 5.9E-13 104.3 23.3 57 386-442 173-229 (486)
102 PRK06753 hypothetical protein; 99.1 4.9E-08 1.1E-12 105.5 26.3 61 387-450 99-159 (373)
103 PRK12842 putative succinate de 99.1 8.2E-09 1.8E-13 117.6 21.0 58 386-443 214-275 (574)
104 PLN02464 glycerol-3-phosphate 99.1 4.4E-09 9.6E-14 120.3 18.6 58 386-443 232-296 (627)
105 PRK08849 2-octaprenyl-3-methyl 99.1 9.7E-08 2.1E-12 103.7 28.2 62 388-450 112-174 (384)
106 PRK12266 glpD glycerol-3-phosp 99.1 4.4E-09 9.5E-14 118.0 17.9 58 386-444 155-217 (508)
107 PLN02985 squalene monooxygenas 99.1 1.5E-07 3.2E-12 105.4 30.0 64 387-451 148-216 (514)
108 PRK07121 hypothetical protein; 99.1 8.9E-09 1.9E-13 115.4 20.3 60 384-443 175-239 (492)
109 PRK05257 malate:quinone oxidor 99.0 6.1E-09 1.3E-13 115.7 18.4 68 376-444 170-247 (494)
110 PRK13339 malate:quinone oxidor 99.0 2.8E-09 6.2E-14 117.6 15.1 67 377-444 172-248 (497)
111 PRK06617 2-octaprenyl-6-methox 99.0 1.1E-07 2.4E-12 102.8 27.2 63 387-451 105-168 (374)
112 PRK11445 putative oxidoreducta 99.0 1.8E-07 3.9E-12 100.2 28.7 57 392-450 105-164 (351)
113 PRK06126 hypothetical protein; 99.0 3E-08 6.4E-13 112.8 23.7 62 388-450 128-195 (545)
114 PRK12769 putative oxidoreducta 99.0 3.6E-10 7.8E-15 130.7 8.1 90 107-197 278-367 (654)
115 PRK12809 putative oxidoreducta 99.0 4.4E-10 9.5E-15 129.4 7.9 96 107-204 261-356 (639)
116 TIGR01813 flavo_cyto_c flavocy 99.0 6.8E-09 1.5E-13 114.7 17.0 59 386-444 130-193 (439)
117 COG0562 Glf UDP-galactopyranos 99.0 3.6E-09 7.8E-14 105.8 12.6 230 157-443 1-240 (374)
118 KOG2415 Electron transfer flav 99.0 4.3E-08 9.4E-13 100.8 20.5 58 386-443 183-256 (621)
119 PRK12831 putative oxidoreducta 99.0 3.9E-10 8.4E-15 124.9 6.4 89 107-197 92-180 (464)
120 PF05834 Lycopene_cycl: Lycope 99.0 6.1E-07 1.3E-11 96.9 30.8 54 387-442 88-141 (374)
121 PRK08163 salicylate hydroxylas 99.0 9.8E-09 2.1E-13 111.9 17.1 62 387-449 110-172 (396)
122 TIGR01318 gltD_gamma_fam gluta 99.0 7.9E-10 1.7E-14 122.6 8.2 90 107-197 92-181 (467)
123 PRK06996 hypothetical protein; 99.0 9.7E-08 2.1E-12 104.1 24.3 63 387-450 116-182 (398)
124 PRK12775 putative trifunctiona 99.0 6.4E-10 1.4E-14 133.0 7.4 88 107-197 383-470 (1006)
125 PRK07538 hypothetical protein; 99.0 2.6E-07 5.6E-12 101.3 27.4 63 387-450 103-172 (413)
126 PRK06134 putative FAD-binding 99.0 5.3E-08 1.1E-12 111.0 22.4 58 386-443 217-278 (581)
127 PRK06175 L-aspartate oxidase; 99.0 1.9E-08 4E-13 110.6 18.0 58 386-443 128-189 (433)
128 PRK07190 hypothetical protein; 99.0 9.7E-09 2.1E-13 114.4 16.0 62 388-450 111-172 (487)
129 PRK12835 3-ketosteroid-delta-1 99.0 2.1E-08 4.4E-13 114.2 18.6 59 385-443 212-275 (584)
130 PRK13369 glycerol-3-phosphate 99.0 2.8E-09 6E-14 119.6 11.4 57 386-443 155-215 (502)
131 TIGR01989 COQ6 Ubiquinone bios 99.0 1.8E-07 4E-12 103.2 25.3 64 387-450 118-190 (437)
132 TIGR03197 MnmC_Cterm tRNA U-34 98.9 4.1E-08 8.8E-13 106.5 19.8 66 376-443 122-190 (381)
133 PRK06184 hypothetical protein; 98.9 7.7E-09 1.7E-13 116.3 14.1 62 388-450 111-175 (502)
134 PRK12844 3-ketosteroid-delta-1 98.9 4.3E-08 9.3E-13 111.1 20.0 60 385-444 207-270 (557)
135 PRK06834 hypothetical protein; 98.9 9E-09 2E-13 114.8 14.0 63 387-450 101-163 (488)
136 PRK07573 sdhA succinate dehydr 98.9 2.6E-08 5.5E-13 114.4 17.4 55 389-443 173-232 (640)
137 PRK05192 tRNA uridine 5-carbox 98.9 1.8E-08 3.9E-13 112.3 15.5 56 387-443 101-157 (618)
138 PRK06452 sdhA succinate dehydr 98.9 3.4E-08 7.4E-13 112.1 18.0 58 386-443 136-198 (566)
139 PLN02661 Putative thiazole syn 98.9 2.7E-08 5.8E-13 103.8 15.6 41 156-196 91-132 (357)
140 PRK12834 putative FAD-binding 98.9 3E-08 6.5E-13 112.5 17.5 42 156-197 3-46 (549)
141 PRK12837 3-ketosteroid-delta-1 98.9 3.2E-08 6.9E-13 111.2 17.3 58 386-443 173-235 (513)
142 PRK12843 putative FAD-binding 98.9 1.1E-07 2.5E-12 108.3 21.7 59 386-444 221-283 (578)
143 PRK07236 hypothetical protein; 98.9 5.4E-08 1.2E-12 105.7 18.3 49 400-449 112-160 (386)
144 PF01134 GIDA: Glucose inhibit 98.9 1.6E-08 3.5E-13 107.0 13.4 55 387-442 96-151 (392)
145 TIGR01316 gltA glutamate synth 98.9 2.1E-09 4.5E-14 118.9 6.8 91 107-197 80-173 (449)
146 TIGR01812 sdhA_frdA_Gneg succi 98.9 7.6E-08 1.6E-12 109.8 19.7 58 386-443 129-191 (566)
147 KOG0399 Glutamate synthase [Am 98.9 2.1E-09 4.6E-14 121.0 6.6 97 107-207 1738-1834(2142)
148 PTZ00139 Succinate dehydrogena 98.9 8.3E-08 1.8E-12 109.9 19.8 58 386-443 166-229 (617)
149 PRK06854 adenylylsulfate reduc 98.9 8.8E-08 1.9E-12 109.5 19.9 58 386-443 132-195 (608)
150 TIGR00275 flavoprotein, HI0933 98.9 4.4E-08 9.6E-13 106.6 16.7 58 384-443 103-160 (400)
151 PRK08294 phenol 2-monooxygenas 98.9 3.2E-07 6.9E-12 105.4 24.3 63 387-450 142-217 (634)
152 PRK09078 sdhA succinate dehydr 98.9 1E-07 2.2E-12 108.9 20.0 58 386-443 149-212 (598)
153 PF01494 FAD_binding_3: FAD bi 98.9 1.4E-08 3E-13 108.5 12.1 64 387-450 112-179 (356)
154 PRK12778 putative bifunctional 98.9 2.5E-09 5.5E-14 125.6 6.8 91 107-197 381-471 (752)
155 PRK07843 3-ketosteroid-delta-1 98.9 5.2E-08 1.1E-12 110.5 17.0 60 385-444 207-270 (557)
156 PRK07804 L-aspartate oxidase; 98.9 9.7E-08 2.1E-12 107.9 19.0 58 386-443 144-210 (541)
157 KOG2614 Kynurenine 3-monooxyge 98.9 5.3E-07 1.2E-11 94.0 22.6 39 157-195 2-40 (420)
158 PRK08958 sdhA succinate dehydr 98.8 9.9E-08 2.1E-12 108.7 18.8 59 385-443 142-206 (588)
159 TIGR03378 glycerol3P_GlpB glyc 98.8 7E-08 1.5E-12 103.4 16.2 57 386-442 263-321 (419)
160 PLN02927 antheraxanthin epoxid 98.8 3.5E-06 7.6E-11 95.9 30.7 59 387-449 195-254 (668)
161 PRK05868 hypothetical protein; 98.8 5.6E-08 1.2E-12 104.9 15.7 52 398-450 116-167 (372)
162 PLN00128 Succinate dehydrogena 98.8 1.3E-07 2.9E-12 108.3 19.4 59 385-443 186-250 (635)
163 PRK12839 hypothetical protein; 98.8 1.1E-07 2.3E-12 107.9 18.2 59 386-444 214-277 (572)
164 PTZ00367 squalene epoxidase; P 98.8 1.2E-06 2.5E-11 98.9 26.2 35 156-190 32-66 (567)
165 PRK07803 sdhA succinate dehydr 98.8 1.5E-07 3.2E-12 108.1 19.4 58 386-443 138-213 (626)
166 PRK05945 sdhA succinate dehydr 98.8 7.1E-08 1.5E-12 109.9 16.6 59 385-443 134-197 (575)
167 TIGR03315 Se_ygfK putative sel 98.8 4.1E-09 9E-14 124.0 6.5 88 107-197 489-577 (1012)
168 PF13738 Pyr_redox_3: Pyridine 98.8 3E-08 6.6E-13 97.3 11.6 55 387-442 83-137 (203)
169 PRK08275 putative oxidoreducta 98.8 8.9E-08 1.9E-12 108.7 16.9 58 386-443 137-200 (554)
170 PRK08205 sdhA succinate dehydr 98.8 1.4E-07 3E-12 107.7 18.5 58 386-443 140-206 (583)
171 TIGR00551 nadB L-aspartate oxi 98.8 1E-07 2.2E-12 106.6 17.1 59 386-444 128-190 (488)
172 PRK12810 gltD glutamate syntha 98.8 4.7E-09 1E-13 116.8 6.3 88 107-197 96-183 (471)
173 PRK07057 sdhA succinate dehydr 98.8 2.8E-07 6.1E-12 105.2 20.6 58 386-443 148-211 (591)
174 PRK08401 L-aspartate oxidase; 98.8 2E-07 4.3E-12 103.6 18.6 57 386-444 120-176 (466)
175 PRK07395 L-aspartate oxidase; 98.8 1.5E-07 3.3E-12 106.3 17.8 59 385-443 133-197 (553)
176 KOG2852 Possible oxidoreductas 98.8 2.9E-07 6.3E-12 90.7 17.2 62 386-450 147-213 (380)
177 PRK06263 sdhA succinate dehydr 98.8 2.2E-07 4.7E-12 105.3 19.0 58 386-443 134-197 (543)
178 TIGR02485 CobZ_N-term precorri 98.8 1.3E-07 2.8E-12 104.3 16.8 63 380-442 117-182 (432)
179 PRK09853 putative selenate red 98.8 1.1E-08 2.3E-13 120.0 8.3 88 107-197 491-579 (1019)
180 PRK08626 fumarate reductase fl 98.8 9.6E-08 2.1E-12 109.9 16.0 60 384-443 156-220 (657)
181 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1.2E-07 2.6E-12 103.1 16.0 65 387-451 104-171 (390)
182 PRK06069 sdhA succinate dehydr 98.8 2.4E-07 5.2E-12 105.7 19.1 58 386-443 137-200 (577)
183 PRK08243 4-hydroxybenzoate 3-m 98.8 1.4E-07 3.1E-12 102.6 16.4 64 387-451 104-171 (392)
184 PRK05249 soluble pyridine nucl 98.8 2.8E-08 6.1E-13 110.6 10.8 57 386-443 216-272 (461)
185 PTZ00306 NADH-dependent fumara 98.8 2.2E-07 4.7E-12 113.7 19.3 43 155-197 407-449 (1167)
186 PRK05329 anaerobic glycerol-3- 98.8 7.1E-08 1.5E-12 104.6 13.5 58 386-443 259-318 (422)
187 PRK08071 L-aspartate oxidase; 98.7 3E-07 6.6E-12 103.2 18.4 57 386-443 130-190 (510)
188 TIGR01292 TRX_reduct thioredox 98.7 1.6E-07 3.4E-12 98.1 15.0 50 392-443 63-112 (300)
189 PLN02815 L-aspartate oxidase 98.7 2.4E-07 5.2E-12 105.2 17.1 58 386-443 155-222 (594)
190 PRK06475 salicylate hydroxylas 98.7 3.7E-07 8E-12 99.7 17.6 63 387-450 108-174 (400)
191 PRK07512 L-aspartate oxidase; 98.7 3.1E-07 6.7E-12 103.2 17.1 59 385-443 135-197 (513)
192 KOG1439 RAB proteins geranylge 98.7 2.7E-06 5.7E-11 88.0 22.2 247 156-437 3-283 (440)
193 PLN02172 flavin-containing mon 98.7 1.4E-07 3.1E-12 104.0 14.1 43 155-197 8-50 (461)
194 PF12831 FAD_oxidored: FAD dep 98.7 1.4E-08 3.1E-13 111.5 6.2 58 392-450 96-156 (428)
195 PRK06567 putative bifunctional 98.7 1.3E-08 2.8E-13 117.8 5.8 83 107-194 323-420 (1028)
196 TIGR01317 GOGAT_sm_gam glutama 98.7 2.4E-08 5.2E-13 111.3 7.4 89 106-197 95-183 (485)
197 PRK08641 sdhA succinate dehydr 98.7 5.9E-07 1.3E-11 102.5 18.8 58 386-443 133-200 (589)
198 TIGR03219 salicylate_mono sali 98.7 1.6E-07 3.5E-12 103.0 13.8 60 387-449 106-165 (414)
199 PF06100 Strep_67kDa_ant: Stre 98.7 1.6E-06 3.5E-11 93.1 20.5 69 158-232 3-77 (500)
200 PRK09231 fumarate reductase fl 98.7 4E-07 8.8E-12 103.7 16.9 58 386-443 133-196 (582)
201 TIGR01176 fum_red_Fp fumarate 98.7 5.4E-07 1.2E-11 102.5 17.9 59 385-443 131-195 (580)
202 TIGR01811 sdhA_Bsu succinate d 98.7 3.9E-07 8.4E-12 104.1 16.7 58 386-443 129-196 (603)
203 TIGR02462 pyranose_ox pyranose 98.7 5.1E-07 1.1E-11 100.6 16.7 37 158-194 1-37 (544)
204 PRK11749 dihydropyrimidine deh 98.6 3.4E-08 7.4E-13 109.6 6.1 89 107-197 92-180 (457)
205 PRK09077 L-aspartate oxidase; 98.6 1.9E-06 4.1E-11 97.4 20.2 58 386-443 138-207 (536)
206 PRK15317 alkyl hydroperoxide r 98.6 4.7E-07 1E-11 102.0 15.2 55 388-443 268-322 (517)
207 PRK05976 dihydrolipoamide dehy 98.6 6.1E-07 1.3E-11 100.1 15.9 42 155-197 2-43 (472)
208 TIGR01424 gluta_reduc_2 glutat 98.6 6.1E-07 1.3E-11 99.3 15.5 40 157-197 2-41 (446)
209 KOG1298 Squalene monooxygenase 98.6 1.6E-06 3.4E-11 88.9 16.9 64 387-451 148-216 (509)
210 COG0492 TrxB Thioredoxin reduc 98.6 4.4E-07 9.6E-12 94.2 13.0 53 388-443 63-115 (305)
211 TIGR03140 AhpF alkyl hydropero 98.6 5.1E-07 1.1E-11 101.7 14.5 53 390-443 271-323 (515)
212 PRK06467 dihydrolipoamide dehy 98.6 8.4E-07 1.8E-11 98.8 15.9 43 155-197 2-44 (471)
213 TIGR00136 gidA glucose-inhibit 98.6 6.9E-07 1.5E-11 99.7 14.7 56 387-443 97-154 (617)
214 PRK06116 glutathione reductase 98.6 7.2E-07 1.6E-11 98.9 15.1 41 156-197 3-43 (450)
215 TIGR02061 aprA adenosine phosp 98.6 3.1E-06 6.6E-11 96.4 19.5 57 387-443 127-191 (614)
216 PF00732 GMC_oxred_N: GMC oxid 98.6 4.1E-07 8.8E-12 95.0 11.7 63 387-449 193-264 (296)
217 PLN02507 glutathione reductase 98.5 9.1E-07 2E-11 99.1 13.7 57 386-443 244-300 (499)
218 TIGR01421 gluta_reduc_1 glutat 98.5 1.3E-06 2.8E-11 96.8 14.4 40 157-197 2-41 (450)
219 PRK12814 putative NADPH-depend 98.5 1E-07 2.2E-12 110.0 5.9 88 107-197 146-233 (652)
220 PRK12771 putative glutamate sy 98.5 2E-07 4.3E-12 106.3 8.0 87 107-197 91-177 (564)
221 KOG1335 Dihydrolipoamide dehyd 98.5 2.8E-07 6E-12 94.3 8.1 59 386-444 252-315 (506)
222 KOG2404 Fumarate reductase, fl 98.5 1.1E-06 2.5E-11 87.8 12.1 39 159-197 11-49 (477)
223 COG1249 Lpd Pyruvate/2-oxoglut 98.5 1.4E-06 2.9E-11 95.2 13.9 59 385-444 213-273 (454)
224 COG3075 GlpB Anaerobic glycero 98.5 1.8E-06 4E-11 86.8 13.1 56 387-442 259-316 (421)
225 PRK06416 dihydrolipoamide dehy 98.4 3.6E-06 7.9E-11 93.7 15.4 41 156-197 3-43 (462)
226 TIGR03143 AhpF_homolog putativ 98.4 1.8E-06 4E-11 98.0 13.1 40 156-196 3-42 (555)
227 TIGR01423 trypano_reduc trypan 98.4 1.9E-07 4.1E-12 104.0 4.8 58 386-443 231-288 (486)
228 PRK13800 putative oxidoreducta 98.4 5.2E-06 1.1E-10 99.4 17.0 58 386-443 139-205 (897)
229 PRK09897 hypothetical protein; 98.4 6.8E-06 1.5E-10 91.8 16.2 54 387-441 108-164 (534)
230 PRK06327 dihydrolipoamide dehy 98.4 5.6E-06 1.2E-10 92.4 15.7 33 156-188 3-35 (475)
231 COG2072 TrkA Predicted flavopr 98.4 5.7E-06 1.2E-10 91.0 14.9 43 155-197 6-49 (443)
232 PF04820 Trp_halogenase: Trypt 98.4 3.6E-06 7.9E-11 92.9 13.1 56 387-443 155-211 (454)
233 COG5044 MRS6 RAB proteins gera 98.3 7.6E-06 1.7E-10 83.7 13.8 245 155-437 4-278 (434)
234 PRK13984 putative oxidoreducta 98.3 5E-07 1.1E-11 104.0 5.8 88 107-197 235-323 (604)
235 TIGR01810 betA choline dehydro 98.3 1.3E-05 2.7E-10 91.0 17.1 57 389-445 196-257 (532)
236 PTZ00058 glutathione reductase 98.3 1E-05 2.2E-10 91.4 15.8 42 155-197 46-87 (561)
237 PRK02106 choline dehydrogenase 98.3 1.2E-05 2.6E-10 91.7 16.0 51 398-448 213-267 (560)
238 COG3573 Predicted oxidoreducta 98.3 1.8E-05 3.8E-10 79.8 14.6 39 156-194 4-44 (552)
239 PLN02546 glutathione reductase 98.3 9.3E-06 2E-10 91.7 14.3 34 155-188 77-110 (558)
240 PF13454 NAD_binding_9: FAD-NA 98.3 1.1E-05 2.4E-10 75.7 12.1 50 390-441 105-155 (156)
241 COG0029 NadB Aspartate oxidase 98.2 8.9E-06 1.9E-10 86.8 11.9 57 386-442 133-195 (518)
242 PF06039 Mqo: Malate:quinone o 98.2 2.4E-05 5.2E-10 83.4 14.9 69 385-455 180-254 (488)
243 PRK07845 flavoprotein disulfid 98.2 3.1E-05 6.8E-10 86.2 16.0 39 158-197 2-40 (466)
244 TIGR01438 TGR thioredoxin and 98.2 5.6E-06 1.2E-10 92.4 9.7 57 386-443 220-279 (484)
245 COG1053 SdhA Succinate dehydro 98.2 1.9E-05 4.1E-10 88.8 13.8 43 155-197 4-46 (562)
246 PF00070 Pyr_redox: Pyridine n 98.2 3.4E-05 7.4E-10 63.4 11.9 34 159-192 1-34 (80)
247 COG1252 Ndh NADH dehydrogenase 98.1 3.4E-05 7.5E-10 82.4 13.3 53 386-443 209-262 (405)
248 KOG0042 Glycerol-3-phosphate d 98.1 8.5E-06 1.8E-10 87.1 7.9 42 156-197 66-107 (680)
249 COG2303 BetA Choline dehydroge 98.1 7.8E-06 1.7E-10 92.2 8.2 37 154-190 4-40 (542)
250 PRK06115 dihydrolipoamide dehy 98.0 4.4E-06 9.5E-11 93.0 5.3 41 157-197 3-43 (466)
251 PRK07251 pyridine nucleotide-d 98.0 7E-06 1.5E-10 90.7 5.5 56 386-443 198-253 (438)
252 PRK06370 mercuric reductase; V 98.0 8.6E-06 1.9E-10 90.7 5.8 57 386-443 212-271 (463)
253 PRK08010 pyridine nucleotide-d 98.0 7.6E-06 1.6E-10 90.6 5.4 56 386-443 199-254 (441)
254 TIGR03377 glycerol3P_GlpA glyc 97.9 7.5E-05 1.6E-09 84.3 13.1 69 376-444 116-191 (516)
255 TIGR01350 lipoamide_DH dihydro 97.9 9.7E-06 2.1E-10 90.3 5.5 57 386-443 211-269 (461)
256 PRK14694 putative mercuric red 97.9 1.2E-05 2.6E-10 89.7 5.8 56 386-443 218-273 (468)
257 PRK07818 dihydrolipoamide dehy 97.9 1.3E-05 2.8E-10 89.3 5.8 57 386-443 213-273 (466)
258 PLN02852 ferredoxin-NADP+ redu 97.9 1.5E-05 3.3E-10 88.1 6.2 42 156-197 25-68 (491)
259 COG0445 GidA Flavin-dependent 97.9 1.8E-05 3.9E-10 85.3 6.5 52 390-442 104-157 (621)
260 PLN02785 Protein HOTHEAD 97.9 0.00018 4E-09 81.8 14.6 36 155-191 53-88 (587)
261 PRK08255 salicylyl-CoA 5-hydro 97.9 7E-05 1.5E-09 88.3 11.4 52 386-450 97-148 (765)
262 PRK06292 dihydrolipoamide dehy 97.9 1.5E-05 3.3E-10 88.7 5.6 41 156-197 2-42 (460)
263 KOG1399 Flavin-containing mono 97.9 1.6E-05 3.4E-10 86.6 5.3 42 156-197 5-46 (448)
264 TIGR02053 MerA mercuric reduct 97.8 2E-05 4.2E-10 87.9 5.4 57 386-443 207-266 (463)
265 COG4716 Myosin-crossreactive a 97.8 0.00016 3.4E-09 74.2 11.1 71 156-232 21-97 (587)
266 PRK14727 putative mercuric red 97.8 2.7E-05 5.8E-10 87.1 6.0 57 386-444 228-284 (479)
267 PRK13748 putative mercuric red 97.8 2.6E-05 5.7E-10 89.1 5.4 56 386-443 310-365 (561)
268 PRK09564 coenzyme A disulfide 97.7 0.00017 3.8E-09 79.8 11.6 47 396-443 66-115 (444)
269 PTZ00052 thioredoxin reductase 97.7 3.1E-05 6.8E-10 86.8 5.5 57 386-443 222-278 (499)
270 PTZ00188 adrenodoxin reductase 97.7 4.1E-05 8.8E-10 83.5 6.0 42 156-197 38-80 (506)
271 COG1148 HdrA Heterodisulfide r 97.7 3.4E-05 7.3E-10 81.7 5.0 43 156-198 123-165 (622)
272 PRK09754 phenylpropionate diox 97.7 0.00042 9.2E-09 75.5 13.9 50 392-443 192-241 (396)
273 PRK10262 thioredoxin reductase 97.7 4.8E-05 1E-09 80.5 5.7 41 156-197 5-45 (321)
274 PRK04965 NADH:flavorubredoxin 97.7 0.00054 1.2E-08 74.2 13.9 51 392-443 189-239 (377)
275 PTZ00153 lipoamide dehydrogena 97.7 0.00011 2.4E-09 84.3 8.5 43 155-197 114-157 (659)
276 KOG2665 Predicted FAD-dependen 97.6 0.00096 2.1E-08 67.2 13.6 59 385-443 195-257 (453)
277 PTZ00318 NADH dehydrogenase-li 97.6 0.00046 9.9E-09 76.0 12.0 51 386-441 228-278 (424)
278 TIGR01350 lipoamide_DH dihydro 97.6 0.00089 1.9E-08 74.6 14.1 34 158-191 171-204 (461)
279 KOG3923 D-aspartate oxidase [A 97.6 0.0052 1.1E-07 61.7 17.4 186 387-653 152-339 (342)
280 PRK05335 tRNA (uracil-5-)-meth 97.5 9.2E-05 2E-09 79.6 5.3 35 158-192 3-37 (436)
281 TIGR01372 soxA sarcosine oxida 97.5 9.5E-05 2.1E-09 89.5 6.1 42 156-197 162-203 (985)
282 TIGR01789 lycopene_cycl lycope 97.5 9.6E-05 2.1E-09 79.6 5.2 37 159-195 1-39 (370)
283 PF00743 FMO-like: Flavin-bind 97.5 9.5E-05 2.1E-09 83.0 5.1 40 158-197 2-41 (531)
284 PRK06416 dihydrolipoamide dehy 97.5 0.0011 2.4E-08 73.9 13.5 51 392-443 219-272 (462)
285 COG0446 HcaD Uncharacterized N 97.5 0.00075 1.6E-08 73.6 12.0 51 392-442 184-236 (415)
286 PRK06116 glutathione reductase 97.5 0.0016 3.4E-08 72.4 14.1 52 392-443 214-265 (450)
287 PF07992 Pyr_redox_2: Pyridine 97.5 0.00014 3.1E-09 71.0 5.0 32 159-190 1-32 (201)
288 PRK05976 dihydrolipoamide dehy 97.4 0.0015 3.2E-08 73.0 13.4 52 392-443 227-281 (472)
289 TIGR01421 gluta_reduc_1 glutat 97.4 0.0016 3.4E-08 72.3 13.4 52 392-443 213-265 (450)
290 PRK07845 flavoprotein disulfid 97.4 0.0022 4.9E-08 71.4 14.0 51 392-443 224-274 (466)
291 PRK07251 pyridine nucleotide-d 97.4 0.0021 4.5E-08 71.1 13.6 35 158-192 158-192 (438)
292 PRK14989 nitrite reductase sub 97.4 0.00099 2.1E-08 79.0 11.4 45 396-443 69-113 (847)
293 TIGR02374 nitri_red_nirB nitri 97.4 0.0017 3.8E-08 76.8 13.4 50 392-442 188-237 (785)
294 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.0002 4.3E-09 77.5 4.9 36 159-194 2-37 (433)
295 PRK14989 nitrite reductase sub 97.3 0.0019 4.2E-08 76.6 13.5 52 392-443 193-245 (847)
296 TIGR03862 flavo_PP4765 unchara 97.3 0.0041 8.8E-08 66.6 14.6 64 376-442 75-140 (376)
297 KOG0405 Pyridine nucleotide-di 97.3 0.00015 3.3E-09 73.7 3.5 61 383-443 226-287 (478)
298 KOG2311 NAD/FAD-utilizing prot 97.3 0.0014 3.1E-08 69.4 10.7 36 155-190 26-61 (679)
299 PRK07818 dihydrolipoamide dehy 97.3 0.0029 6.3E-08 70.5 13.8 34 158-191 173-206 (466)
300 PRK12770 putative glutamate sy 97.3 0.00034 7.4E-09 75.0 6.0 42 156-197 17-58 (352)
301 TIGR01424 gluta_reduc_2 glutat 97.3 0.0033 7.2E-08 69.7 13.7 50 393-443 214-263 (446)
302 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00056 1.2E-08 69.6 6.7 56 388-443 268-325 (520)
303 KOG1238 Glucose dehydrogenase/ 97.3 0.0034 7.3E-08 69.9 13.2 39 154-192 54-93 (623)
304 PRK06370 mercuric reductase; V 97.2 0.004 8.7E-08 69.4 14.0 35 158-192 172-206 (463)
305 PF13434 K_oxygenase: L-lysine 97.2 0.00053 1.1E-08 72.8 6.6 35 157-191 2-37 (341)
306 TIGR03385 CoA_CoA_reduc CoA-di 97.2 0.0037 8E-08 68.9 13.5 48 392-442 185-232 (427)
307 TIGR03169 Nterm_to_SelD pyridi 97.2 0.0012 2.7E-08 71.0 9.5 47 394-444 62-108 (364)
308 PRK06912 acoL dihydrolipoamide 97.2 0.00037 8.1E-09 77.5 5.4 56 386-443 211-268 (458)
309 TIGR02374 nitri_red_nirB nitri 97.2 0.00094 2E-08 79.1 8.9 45 396-443 64-108 (785)
310 PRK06327 dihydrolipoamide dehy 97.2 0.004 8.6E-08 69.6 13.5 50 393-443 231-284 (475)
311 PTZ00052 thioredoxin reductase 97.2 0.004 8.7E-08 69.9 13.1 32 158-189 183-214 (499)
312 TIGR02053 MerA mercuric reduct 97.1 0.0044 9.5E-08 69.1 13.1 35 158-192 167-201 (463)
313 PRK14694 putative mercuric red 97.1 0.0053 1.2E-07 68.5 13.7 32 158-189 179-210 (468)
314 PRK06912 acoL dihydrolipoamide 97.1 0.006 1.3E-07 67.9 14.1 35 158-192 171-205 (458)
315 PRK07846 mycothione reductase; 97.1 0.0051 1.1E-07 68.2 13.3 45 398-443 218-262 (451)
316 PRK13512 coenzyme A disulfide 97.1 0.0042 9.1E-08 68.7 12.4 47 392-443 195-241 (438)
317 PRK08010 pyridine nucleotide-d 97.1 0.0061 1.3E-07 67.5 13.6 34 158-191 159-192 (441)
318 PRK06115 dihydrolipoamide dehy 97.1 0.0072 1.6E-07 67.4 14.1 35 157-191 174-208 (466)
319 COG4529 Uncharacterized protei 97.1 0.0066 1.4E-07 65.4 12.9 39 158-197 2-44 (474)
320 PRK14727 putative mercuric red 97.1 0.0058 1.3E-07 68.4 13.2 32 158-189 189-220 (479)
321 PRK09564 coenzyme A disulfide 97.0 0.0078 1.7E-07 66.7 13.7 49 392-442 197-245 (444)
322 PRK13748 putative mercuric red 97.0 0.0077 1.7E-07 68.9 13.7 33 157-189 270-302 (561)
323 KOG0404 Thioredoxin reductase 97.0 0.0069 1.5E-07 58.2 10.8 54 387-443 71-124 (322)
324 PRK07846 mycothione reductase; 96.9 0.00086 1.9E-08 74.3 4.9 38 157-197 1-38 (451)
325 TIGR03452 mycothione_red mycot 96.9 0.011 2.4E-07 65.6 13.6 44 399-443 222-265 (452)
326 PRK05675 sdhA succinate dehydr 96.9 0.024 5.2E-07 64.7 16.4 59 385-443 125-189 (570)
327 TIGR03452 mycothione_red mycot 96.9 0.00097 2.1E-08 74.0 4.8 38 157-197 2-39 (452)
328 PTZ00058 glutathione reductase 96.9 0.012 2.7E-07 66.6 13.7 34 157-190 237-270 (561)
329 PF07156 Prenylcys_lyase: Pren 96.9 0.02 4.3E-07 61.2 14.1 111 326-442 69-186 (368)
330 KOG1800 Ferredoxin/adrenodoxin 96.8 0.0018 3.8E-08 67.1 5.2 42 156-197 19-62 (468)
331 PLN02546 glutathione reductase 96.8 0.015 3.2E-07 66.0 13.3 52 392-443 299-350 (558)
332 PRK10262 thioredoxin reductase 96.8 0.011 2.4E-07 62.4 11.5 50 393-442 192-247 (321)
333 TIGR03140 AhpF alkyl hydropero 96.7 0.0098 2.1E-07 67.2 11.0 44 399-442 401-449 (515)
334 PRK06467 dihydrolipoamide dehy 96.7 0.018 3.9E-07 64.3 12.9 34 158-191 175-208 (471)
335 KOG2960 Protein involved in th 96.6 0.00062 1.3E-08 64.6 0.7 41 157-197 76-118 (328)
336 TIGR01316 gltA glutamate synth 96.6 0.025 5.4E-07 62.7 13.3 34 157-190 272-305 (449)
337 PRK06292 dihydrolipoamide dehy 96.4 0.032 6.9E-07 62.1 13.0 35 157-191 169-203 (460)
338 KOG1336 Monodehydroascorbate/f 96.4 0.028 6.1E-07 60.4 11.5 53 391-443 260-313 (478)
339 KOG4716 Thioredoxin reductase 96.3 0.0059 1.3E-07 62.2 5.5 66 382-447 234-304 (503)
340 KOG4405 GDP dissociation inhib 96.3 0.12 2.5E-06 54.4 14.9 63 378-440 278-342 (547)
341 PRK09754 phenylpropionate diox 96.3 0.0049 1.1E-07 67.2 5.2 44 397-443 69-112 (396)
342 PRK12831 putative oxidoreducta 96.1 0.07 1.5E-06 59.4 13.3 34 156-189 280-313 (464)
343 PRK13512 coenzyme A disulfide 96.1 0.0066 1.4E-07 67.1 5.0 35 158-192 2-38 (438)
344 PRK11749 dihydropyrimidine deh 96.1 0.059 1.3E-06 59.9 12.6 34 156-189 272-306 (457)
345 PTZ00153 lipoamide dehydrogena 96.0 0.077 1.7E-06 61.3 13.0 34 158-191 313-346 (659)
346 PRK15317 alkyl hydroperoxide r 95.9 0.048 1E-06 61.7 11.2 44 399-442 400-448 (517)
347 TIGR01292 TRX_reduct thioredox 95.8 0.086 1.9E-06 54.7 11.6 33 157-189 141-173 (300)
348 COG1251 NirB NAD(P)H-nitrite r 95.6 0.031 6.6E-07 63.1 7.8 50 392-442 193-242 (793)
349 COG1206 Gid NAD(FAD)-utilizing 95.5 0.024 5.1E-07 57.9 5.8 37 157-193 3-39 (439)
350 COG3486 IucD Lysine/ornithine 95.3 0.063 1.4E-06 56.7 8.4 37 155-191 3-40 (436)
351 PF01210 NAD_Gly3P_dh_N: NAD-d 94.8 0.029 6.2E-07 52.6 3.9 32 159-190 1-32 (157)
352 TIGR01816 sdhA_forward succina 94.7 0.12 2.7E-06 58.9 9.5 59 385-443 118-181 (565)
353 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.04 8.6E-07 52.9 4.4 32 159-190 1-32 (180)
354 PRK04965 NADH:flavorubredoxin 94.6 0.044 9.6E-07 59.3 5.2 44 396-443 68-111 (377)
355 PRK12769 putative oxidoreducta 94.5 0.46 1E-05 55.4 13.6 39 615-653 615-653 (654)
356 TIGR01470 cysG_Nterm siroheme 94.4 0.91 2E-05 44.5 13.5 35 157-191 9-43 (205)
357 KOG3855 Monooxygenase involved 94.3 0.048 1E-06 57.4 4.4 37 155-191 34-74 (481)
358 TIGR01318 gltD_gamma_fam gluta 94.1 0.64 1.4E-05 51.9 13.2 34 157-190 282-316 (467)
359 PF03721 UDPG_MGDP_dh_N: UDP-g 94.1 0.053 1.1E-06 52.3 3.9 34 158-191 1-34 (185)
360 PRK02705 murD UDP-N-acetylmura 94.0 0.058 1.3E-06 60.0 4.7 34 159-192 2-35 (459)
361 TIGR01372 soxA sarcosine oxida 93.9 0.43 9.3E-06 58.3 12.2 46 396-442 361-410 (985)
362 PRK01438 murD UDP-N-acetylmura 93.8 0.077 1.7E-06 59.4 5.3 34 157-190 16-49 (480)
363 PRK06129 3-hydroxyacyl-CoA deh 93.1 0.1 2.2E-06 54.8 4.4 34 158-191 3-36 (308)
364 PF02558 ApbA: Ketopantoate re 92.9 0.16 3.4E-06 47.0 5.0 31 160-190 1-31 (151)
365 PRK06718 precorrin-2 dehydroge 92.8 3.3 7.2E-05 40.5 14.3 33 157-189 10-42 (202)
366 COG0569 TrkA K+ transport syst 92.7 0.13 2.9E-06 51.2 4.4 34 158-191 1-34 (225)
367 PRK07066 3-hydroxybutyryl-CoA 92.5 0.19 4.2E-06 52.7 5.5 34 158-191 8-41 (321)
368 PRK07819 3-hydroxybutyryl-CoA 92.4 0.18 3.9E-06 52.2 5.1 34 158-191 6-39 (286)
369 PRK14106 murD UDP-N-acetylmura 92.4 0.17 3.7E-06 56.2 5.2 34 157-190 5-38 (450)
370 PRK07530 3-hydroxybutyryl-CoA 92.0 0.21 4.5E-06 51.9 5.0 33 158-190 5-37 (292)
371 PRK08293 3-hydroxybutyryl-CoA 92.0 0.19 4.1E-06 52.2 4.7 33 158-190 4-36 (287)
372 PRK06249 2-dehydropantoate 2-r 91.9 0.24 5.3E-06 52.0 5.4 34 157-190 5-38 (313)
373 PRK09260 3-hydroxybutyryl-CoA 91.6 0.19 4.2E-06 52.1 4.3 33 159-191 3-35 (288)
374 PF13241 NAD_binding_7: Putati 91.5 0.13 2.7E-06 44.5 2.3 89 157-247 7-99 (103)
375 COG1249 Lpd Pyruvate/2-oxoglut 91.2 0.3 6.6E-06 53.8 5.3 37 156-192 172-208 (454)
376 PF01262 AlaDh_PNT_C: Alanine 91.1 0.34 7.4E-06 45.8 5.1 34 157-190 20-53 (168)
377 PF01488 Shikimate_DH: Shikima 91.1 0.37 8E-06 43.8 5.1 35 156-190 11-46 (135)
378 PRK05708 2-dehydropantoate 2-r 90.8 0.31 6.8E-06 51.0 4.8 34 157-190 2-35 (305)
379 PRK05249 soluble pyridine nucl 90.7 0.33 7.2E-06 54.0 5.2 36 157-192 175-210 (461)
380 COG1004 Ugd Predicted UDP-gluc 90.6 0.31 6.7E-06 51.6 4.4 33 158-190 1-33 (414)
381 PRK06035 3-hydroxyacyl-CoA deh 90.5 0.31 6.8E-06 50.6 4.5 33 158-190 4-36 (291)
382 PRK06522 2-dehydropantoate 2-r 90.5 0.33 7.2E-06 50.6 4.7 31 159-189 2-32 (304)
383 PF13738 Pyr_redox_3: Pyridine 90.3 0.34 7.3E-06 47.1 4.3 35 156-190 166-200 (203)
384 PRK14618 NAD(P)H-dependent gly 90.3 0.42 9.1E-06 50.6 5.3 33 158-190 5-37 (328)
385 PRK12921 2-dehydropantoate 2-r 90.1 0.35 7.6E-06 50.5 4.5 30 159-188 2-31 (305)
386 KOG1346 Programmed cell death 90.1 0.29 6.3E-06 51.6 3.7 55 387-442 394-448 (659)
387 PRK06130 3-hydroxybutyryl-CoA 90.0 0.43 9.3E-06 50.1 5.1 33 158-190 5-37 (311)
388 PLN02545 3-hydroxybutyryl-CoA 90.0 0.43 9.2E-06 49.7 5.0 33 158-190 5-37 (295)
389 PRK05808 3-hydroxybutyryl-CoA 89.9 0.35 7.5E-06 50.0 4.2 34 158-191 4-37 (282)
390 PRK11064 wecC UDP-N-acetyl-D-m 89.8 0.4 8.6E-06 52.5 4.8 34 158-191 4-37 (415)
391 PRK08229 2-dehydropantoate 2-r 89.7 0.42 9E-06 50.9 4.8 32 158-189 3-34 (341)
392 PRK06719 precorrin-2 dehydroge 89.7 0.56 1.2E-05 43.9 5.0 33 156-188 12-44 (157)
393 cd05292 LDH_2 A subgroup of L- 89.5 0.47 1E-05 49.7 4.9 33 159-191 2-36 (308)
394 PRK04148 hypothetical protein; 89.5 0.41 9E-06 43.2 3.8 33 158-191 18-50 (134)
395 COG0686 Ald Alanine dehydrogen 89.4 0.38 8.2E-06 49.1 3.8 35 155-189 166-200 (371)
396 TIGR01763 MalateDH_bact malate 89.4 0.54 1.2E-05 49.2 5.2 33 158-190 2-35 (305)
397 TIGR02354 thiF_fam2 thiamine b 89.3 0.57 1.2E-05 45.7 4.9 34 157-190 21-55 (200)
398 cd01080 NAD_bind_m-THF_DH_Cycl 89.3 0.62 1.3E-05 44.0 5.0 34 156-189 43-77 (168)
399 TIGR00518 alaDH alanine dehydr 89.1 0.55 1.2E-05 50.5 5.1 34 157-190 167-200 (370)
400 PRK08268 3-hydroxy-acyl-CoA de 89.0 0.56 1.2E-05 52.7 5.3 34 158-191 8-41 (507)
401 TIGR03026 NDP-sugDHase nucleot 88.9 0.46 9.9E-06 52.1 4.5 33 159-191 2-34 (411)
402 TIGR03169 Nterm_to_SelD pyridi 88.7 1.1 2.3E-05 48.1 7.2 51 387-442 192-242 (364)
403 PRK14619 NAD(P)H-dependent gly 88.7 0.63 1.4E-05 48.8 5.2 34 157-190 4-37 (308)
404 COG1748 LYS9 Saccharopine dehy 88.4 0.62 1.3E-05 49.9 4.8 32 158-189 2-34 (389)
405 KOG2495 NADH-dehydrogenase (ub 88.0 24 0.00052 38.1 16.0 53 387-442 274-328 (491)
406 PLN02507 glutathione reductase 88.0 0.64 1.4E-05 52.3 5.0 35 158-192 204-238 (499)
407 PRK09424 pntA NAD(P) transhydr 87.8 0.66 1.4E-05 51.7 4.9 35 156-190 164-198 (509)
408 PRK07531 bifunctional 3-hydrox 87.7 0.7 1.5E-05 51.9 5.0 33 158-190 5-37 (495)
409 PRK00094 gpsA NAD(P)H-dependen 87.7 0.66 1.4E-05 48.9 4.6 33 158-190 2-34 (325)
410 TIGR03143 AhpF_homolog putativ 87.6 0.69 1.5E-05 52.8 5.0 35 157-191 143-177 (555)
411 PF03446 NAD_binding_2: NAD bi 87.6 0.86 1.9E-05 42.8 4.9 33 158-190 2-34 (163)
412 PRK14620 NAD(P)H-dependent gly 87.5 0.67 1.5E-05 49.0 4.5 32 159-190 2-33 (326)
413 cd00401 AdoHcyase S-adenosyl-L 87.3 0.83 1.8E-05 49.6 5.1 35 156-190 201-235 (413)
414 PF02254 TrkA_N: TrkA-N domain 87.2 0.93 2E-05 39.6 4.6 32 160-191 1-32 (116)
415 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.2 0.68 1.5E-05 51.9 4.5 34 158-191 6-39 (503)
416 KOG3851 Sulfide:quinone oxidor 87.1 0.76 1.6E-05 47.1 4.3 52 384-435 234-288 (446)
417 PRK07417 arogenate dehydrogena 87.0 0.71 1.5E-05 47.6 4.2 32 159-190 2-33 (279)
418 PRK12770 putative glutamate sy 86.8 0.84 1.8E-05 48.8 4.8 34 157-190 172-206 (352)
419 cd01075 NAD_bind_Leu_Phe_Val_D 86.7 1.1 2.3E-05 43.9 5.1 34 157-190 28-61 (200)
420 KOG2755 Oxidoreductase [Genera 86.5 0.56 1.2E-05 46.7 2.9 34 159-192 1-36 (334)
421 PRK02472 murD UDP-N-acetylmura 86.5 0.86 1.9E-05 50.5 4.9 33 158-190 6-38 (447)
422 PRK04308 murD UDP-N-acetylmura 86.4 1 2.2E-05 49.9 5.4 35 158-192 6-40 (445)
423 PRK12549 shikimate 5-dehydroge 86.4 1 2.2E-05 46.6 5.0 34 157-190 127-161 (284)
424 TIGR01438 TGR thioredoxin and 86.3 0.91 2E-05 50.9 5.0 32 158-189 181-212 (484)
425 PTZ00082 L-lactate dehydrogena 86.3 1.3 2.8E-05 46.7 5.8 35 157-191 6-41 (321)
426 COG0771 MurD UDP-N-acetylmuram 86.2 0.98 2.1E-05 49.4 4.9 36 157-192 7-42 (448)
427 PRK00066 ldh L-lactate dehydro 86.0 1.3 2.9E-05 46.5 5.7 35 156-190 5-41 (315)
428 PRK01710 murD UDP-N-acetylmura 85.9 0.98 2.1E-05 50.2 5.0 33 158-190 15-47 (458)
429 PRK15057 UDP-glucose 6-dehydro 85.9 0.83 1.8E-05 49.5 4.2 32 159-191 2-33 (388)
430 KOG2304 3-hydroxyacyl-CoA dehy 85.9 0.83 1.8E-05 44.4 3.6 37 155-191 9-45 (298)
431 TIGR01915 npdG NADPH-dependent 85.6 1.2 2.5E-05 44.3 4.8 32 159-190 2-34 (219)
432 PRK08306 dipicolinate synthase 85.3 1.3 2.8E-05 46.1 5.2 34 157-190 152-185 (296)
433 PRK00421 murC UDP-N-acetylmura 85.1 1.1 2.4E-05 49.9 4.8 36 156-191 6-42 (461)
434 PF00899 ThiF: ThiF family; I 85.0 1.5 3.2E-05 39.7 4.9 35 157-191 2-37 (135)
435 TIGR01423 trypano_reduc trypan 85.0 1.3 2.8E-05 49.7 5.3 36 157-192 187-225 (486)
436 cd05191 NAD_bind_amino_acid_DH 85.0 1.8 3.9E-05 35.8 5.0 32 157-188 23-55 (86)
437 PRK12475 thiamine/molybdopteri 85.0 1.3 2.7E-05 47.1 5.0 35 157-191 24-59 (338)
438 PRK11730 fadB multifunctional 84.9 0.96 2.1E-05 53.2 4.4 34 158-191 314-347 (715)
439 PLN02353 probable UDP-glucose 84.9 1.1 2.5E-05 49.7 4.7 34 158-191 2-37 (473)
440 PRK06223 malate dehydrogenase; 84.8 1.4 2.9E-05 46.2 5.1 34 158-191 3-37 (307)
441 cd05291 HicDH_like L-2-hydroxy 84.7 1.3 2.8E-05 46.4 4.9 33 159-191 2-36 (306)
442 PRK03369 murD UDP-N-acetylmura 84.5 1.3 2.7E-05 49.8 5.0 33 157-189 12-44 (488)
443 PF13478 XdhC_C: XdhC Rossmann 84.5 1.3 2.8E-05 40.2 4.2 32 160-191 1-32 (136)
444 PRK15116 sulfur acceptor prote 84.4 1.5 3.3E-05 44.7 5.0 35 157-191 30-65 (268)
445 PRK04690 murD UDP-N-acetylmura 84.4 1.2 2.7E-05 49.5 4.9 34 158-191 9-42 (468)
446 cd01078 NAD_bind_H4MPT_DH NADP 84.3 1.6 3.5E-05 42.2 5.1 33 157-189 28-61 (194)
447 PRK07688 thiamine/molybdopteri 84.3 1.5 3.2E-05 46.6 5.1 34 157-190 24-58 (339)
448 TIGR01505 tartro_sem_red 2-hyd 84.1 1.1 2.4E-05 46.5 4.1 32 159-190 1-32 (291)
449 TIGR02437 FadB fatty oxidation 84.1 1.1 2.4E-05 52.6 4.4 36 156-191 312-347 (714)
450 PRK12810 gltD glutamate syntha 83.9 2.4 5.2E-05 47.3 6.9 50 392-441 335-398 (471)
451 TIGR02853 spore_dpaA dipicolin 83.8 1.5 3.2E-05 45.4 4.8 35 156-190 150-184 (287)
452 COG1250 FadB 3-hydroxyacyl-CoA 83.8 1.2 2.7E-05 46.2 4.1 33 158-190 4-36 (307)
453 PRK12548 shikimate 5-dehydroge 83.7 1.6 3.5E-05 45.3 5.0 34 157-190 126-160 (289)
454 cd05293 LDH_1 A subgroup of L- 83.4 1.8 4E-05 45.3 5.4 34 157-190 3-38 (312)
455 cd05311 NAD_bind_2_malic_enz N 83.4 1.6 3.4E-05 43.5 4.6 34 157-190 25-61 (226)
456 TIGR00561 pntA NAD(P) transhyd 83.4 1.5 3.3E-05 48.8 4.9 34 157-190 164-197 (511)
457 COG3634 AhpF Alkyl hydroperoxi 83.4 1.4 3.1E-05 45.6 4.3 36 154-189 351-386 (520)
458 PRK11199 tyrA bifunctional cho 83.0 1.3 2.7E-05 47.9 4.1 36 154-189 95-131 (374)
459 TIGR00507 aroE shikimate 5-deh 82.9 1.8 4E-05 44.4 5.0 34 157-190 117-150 (270)
460 PF00056 Ldh_1_N: lactate/mala 82.9 2.3 5E-05 38.9 5.2 33 158-190 1-36 (141)
461 PRK00141 murD UDP-N-acetylmura 82.8 1.6 3.5E-05 48.7 5.0 33 158-190 16-48 (473)
462 TIGR02356 adenyl_thiF thiazole 82.7 2 4.4E-05 42.0 5.0 34 157-190 21-55 (202)
463 cd01487 E1_ThiF_like E1_ThiF_l 82.6 1.9 4.1E-05 41.1 4.7 32 159-190 1-33 (174)
464 TIGR00936 ahcY adenosylhomocys 82.5 1.9 4E-05 46.8 5.0 35 156-190 194-228 (406)
465 PF00670 AdoHcyase_NAD: S-aden 82.4 1.9 4.1E-05 40.2 4.4 35 156-190 22-56 (162)
466 PTZ00117 malate dehydrogenase; 82.2 2.1 4.5E-05 45.1 5.2 34 157-190 5-39 (319)
467 PTZ00318 NADH dehydrogenase-li 82.1 1.8 3.9E-05 47.6 4.9 35 158-192 174-222 (424)
468 TIGR02441 fa_ox_alpha_mit fatt 82.1 1.4 3E-05 51.9 4.2 35 157-191 335-369 (737)
469 PRK07502 cyclohexadienyl dehyd 82.0 1.9 4.1E-05 45.2 4.8 33 158-190 7-41 (307)
470 PRK12778 putative bifunctional 81.8 1.8 3.8E-05 51.5 5.0 34 157-190 570-604 (752)
471 PRK15461 NADH-dependent gamma- 81.7 1.7 3.7E-05 45.3 4.3 32 159-190 3-34 (296)
472 cd01339 LDH-like_MDH L-lactate 81.6 1.7 3.8E-05 45.3 4.4 31 160-190 1-32 (300)
473 cd01483 E1_enzyme_family Super 81.2 2.5 5.4E-05 38.6 4.8 33 159-191 1-34 (143)
474 PRK01368 murD UDP-N-acetylmura 81.1 2 4.4E-05 47.6 4.9 32 157-189 6-37 (454)
475 COG1893 ApbA Ketopantoate redu 81.1 1.8 4E-05 45.2 4.3 34 158-191 1-34 (307)
476 PRK08644 thiamine biosynthesis 81.0 2.4 5.2E-05 41.8 4.8 34 157-190 28-62 (212)
477 PRK02006 murD UDP-N-acetylmura 80.9 2 4.2E-05 48.4 4.8 33 158-190 8-40 (498)
478 COG1251 NirB NAD(P)H-nitrite r 80.8 3.2 6.9E-05 47.5 6.2 56 386-444 59-114 (793)
479 PRK09496 trkA potassium transp 80.8 1.8 3.9E-05 47.9 4.5 33 159-191 2-34 (453)
480 PRK05476 S-adenosyl-L-homocyst 80.8 2.3 5E-05 46.4 5.1 36 156-191 211-246 (425)
481 PTZ00142 6-phosphogluconate de 80.8 1.7 3.6E-05 48.3 4.0 34 158-191 2-35 (470)
482 TIGR02440 FadJ fatty oxidation 80.7 1.8 3.9E-05 50.8 4.5 34 158-191 305-339 (699)
483 cd01065 NAD_bind_Shikimate_DH 80.7 2.8 6E-05 38.7 5.0 34 157-190 19-53 (155)
484 PRK11559 garR tartronate semia 80.5 2.2 4.7E-05 44.4 4.7 33 158-190 3-35 (296)
485 PRK11154 fadJ multifunctional 80.3 1.8 3.9E-05 50.9 4.4 34 157-190 309-343 (708)
486 PRK00683 murD UDP-N-acetylmura 80.1 2.2 4.8E-05 46.8 4.7 33 158-190 4-36 (418)
487 TIGR00872 gnd_rel 6-phosphoglu 80.0 2.2 4.7E-05 44.5 4.4 33 159-191 2-34 (298)
488 TIGR02355 moeB molybdopterin s 80.0 2.6 5.6E-05 42.4 4.8 35 157-191 24-59 (240)
489 COG2084 MmsB 3-hydroxyisobutyr 79.9 2.4 5.2E-05 43.6 4.6 33 159-191 2-34 (286)
490 PRK03803 murD UDP-N-acetylmura 79.9 2.1 4.6E-05 47.4 4.6 33 158-190 7-39 (448)
491 PRK00258 aroE shikimate 5-dehy 79.9 2.7 5.9E-05 43.3 5.1 34 157-190 123-157 (278)
492 TIGR02964 xanthine_xdhC xanthi 79.8 2.9 6.4E-05 42.2 5.1 36 156-191 99-134 (246)
493 TIGR01809 Shik-DH-AROM shikima 79.7 2.7 6E-05 43.4 5.0 34 157-190 125-159 (282)
494 PRK01390 murD UDP-N-acetylmura 79.5 2.2 4.7E-05 47.5 4.5 32 158-189 10-41 (460)
495 PRK05690 molybdopterin biosynt 79.4 2.9 6.3E-05 42.2 5.0 34 157-190 32-66 (245)
496 PLN02520 bifunctional 3-dehydr 78.8 2.7 5.8E-05 47.6 5.0 33 157-189 379-411 (529)
497 PRK12779 putative bifunctional 78.7 2.6 5.7E-05 51.0 5.2 35 156-190 446-480 (944)
498 TIGR03736 PRTRC_ThiF PRTRC sys 78.6 3.1 6.7E-05 41.8 4.8 35 156-190 10-55 (244)
499 PRK14027 quinate/shikimate deh 78.1 3.3 7.2E-05 42.7 5.0 34 157-190 127-161 (283)
500 PF07992 Pyr_redox_2: Pyridine 78.1 2.8 6.1E-05 40.3 4.4 52 391-442 63-121 (201)
No 1
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=2.1e-60 Score=530.94 Aligned_cols=493 Identities=70% Similarity=1.233 Sum_probs=406.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
+||||||||++||+||.+|+++|++|+|+||+..+||+++++.++|+.||.|++.+.++.+...++.+.+.+..++..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 69999999999999999999999999999999999999999999999999999999887655566778888888887766
Q ss_pred EeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhh
Q 005823 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLE 317 (675)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (675)
....+..+.+.+++|..+.++.+.+++.+++.+.+|.+.+++.+|++...+.+..+.......+..+..+...+...+..
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLA 160 (493)
T ss_pred ccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhh
Confidence 66655567778888888999999999999999999999999999999887766544332221222222222222222222
Q ss_pred hhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHH
Q 005823 318 CLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLA 397 (675)
Q Consensus 318 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l~ 397 (675)
...+..+...++.+++++++.++.++.++...+.+++...+.++|+..+.+.+.....+++++|.||++.++++|.+.++
T Consensus 161 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~~~~gG~~~l~~~L~~~~~ 240 (493)
T TIGR02730 161 CLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGINYPKGGVGQIAESLVKGLE 240 (493)
T ss_pred hhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEecCCChHHHHHHHHHHHHH
Confidence 22334455688999999999999999999887777665555778877666555444557889999999999999999999
Q ss_pred HcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEe
Q 005823 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMG 477 (675)
Q Consensus 398 ~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~ 477 (675)
++|++|+++++|++|..+++++.+|++.+|+++.||.||+|++++.++.+|++++.++...++..+.++.+++.+++|++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~ 320 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLG 320 (493)
T ss_pred HCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEE
Confidence 99999999999999999988999999999999999999999999999888998777776555555667788899999999
Q ss_pred eccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHHHHH
Q 005823 478 VKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADE 557 (675)
Q Consensus 478 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~ 557 (675)
++.+..|.....|++++ ++|..+..+.+.+|+++|+..||+++|+|+++++++++.+..+|.++++++|++.|+++.++
T Consensus 321 l~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~ 399 (493)
T TIGR02730 321 VKADVLPPGTECHHILL-EDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAER 399 (493)
T ss_pred ecCccCCCCCCccEEec-chhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHH
Confidence 99876554444456555 34655555566789999999999999999999988888777889888888899999999999
Q ss_pred HHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHh
Q 005823 558 IINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVA 637 (675)
Q Consensus 558 il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~ 637 (675)
+++.|+ +++|+++++|+..++.||.|+++|++..+|.||..+...+.+...+|..+|+++|||+||+++|||+|++||+
T Consensus 400 il~~l~-~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~ 478 (493)
T TIGR02730 400 IIDRLE-KIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVA 478 (493)
T ss_pred HHHHHH-HHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHHHHH
Confidence 999999 7899999999999999999999999999999987765443344433667899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhC
Q 005823 638 FSGVMCAHRVAADIG 652 (675)
Q Consensus 638 ~SG~~aA~~Il~~~g 652 (675)
.||+.||+.|++++|
T Consensus 479 ~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 479 FSGFACAHRVAADLG 493 (493)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999998764
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=4.4e-53 Score=474.07 Aligned_cols=478 Identities=25% Similarity=0.353 Sum_probs=371.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCc----
Q 005823 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE---- 235 (675)
Q Consensus 160 ~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~---- 235 (675)
|||||||++||+||.+|+++|++|+|+|+++.+||+++|++++|+.||.|++++.. +..+.++++.+|.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~------~~~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM------PEALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc------ccHHHHHHHHcCCChhhe
Confidence 69999999999999999999999999999999999999999999999999999862 34677888888854
Q ss_pred eeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhh-hhhhhccchhhHHHhhhhcC
Q 005823 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALN-SLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 314 (675)
+++.+.+....+.+++|..+.++.+.+.+.+++.+.+|.+.+.+.+|++.....+.... .+...+..... .+...
T Consensus 75 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 150 (502)
T TIGR02734 75 VELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPR----DLLRA 150 (502)
T ss_pred EEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHH----HHHhH
Confidence 34455445556677888889999999999999999999999999999988777665221 11111111111 11110
Q ss_pred hhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHHHHH
Q 005823 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAK 394 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~ 394 (675)
. .......+...++.+++++++.++.++.++.....+.+ ..+.+.+..+..+... ...++.++|.||++.++++|.+
T Consensus 151 ~-~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~~-~~~~g~~~~~gG~~~l~~al~~ 227 (502)
T TIGR02734 151 D-LPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG-GNPFRTPSIYALISAL-EREWGVWFPRGGTGALVAAMAK 227 (502)
T ss_pred h-hHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec-cCcccchHHHHHHHHH-HhhceEEEcCCCHHHHHHHHHH
Confidence 0 00112234467889999999999999999986554444 5677777665554433 3346888999999999999999
Q ss_pred HHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEE
Q 005823 395 GLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSI 474 (675)
Q Consensus 395 ~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v 474 (675)
.++++|++|+++++|++|..+++++++|++.+|+++.||.||+|+++..++..|++.+..+....+..++++.+.+.+++
T Consensus 228 ~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~ 307 (502)
T TIGR02734 228 LAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVL 307 (502)
T ss_pred HHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEE
Confidence 99999999999999999999888888999999999999999999999888877887654454444455566778889999
Q ss_pred EEeecccc-CCCCCCccceeeccchhhh-c-----c---CCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCCh
Q 005823 475 HMGVKAEV-LPPDTDCHHFVLEDDWNRL-E-----E---PYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQ 544 (675)
Q Consensus 475 ~l~l~~~~-~p~~~~~~~~~~~~~~~~~-~-----~---~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~ 544 (675)
+++++... ..+....|++++.++|+.. . . ....+|+++|+..||+++|+|++++++++..+.+.+ ..
T Consensus 308 ~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~---~~ 384 (502)
T TIGR02734 308 YFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGT---AD 384 (502)
T ss_pred EEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCC---CC
Confidence 99998421 1133345666666555431 1 0 124589999999999999999999988887653212 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-CCCCcCceEEEEecChhHHHHHhcCCCCc-ccCCCCCCCCCCCCCCC-CCCCCCcEE
Q 005823 545 KDYDAKKELVADEIINRLENKL-FPGLKQSIAFREIGSPKTHRRYLARDQGT-YGPMPRGTPKGLLGMPF-NTTGINGLY 621 (675)
Q Consensus 545 ~~~~~~ke~~~~~il~~L~~~~-~P~l~~~i~~~~v~tP~~~~~~~~~~~G~-yg~~p~~~~~~~~~~p~-~~t~i~gLy 621 (675)
.+|++.|+++.+++++.|+ +. +|+++++|+..++.||.|+++|++.++|+ ||..+...+... .+|. .+|+++|||
T Consensus 385 ~~~~~~k~~~~~~il~~l~-~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~-~rp~~~~t~i~gLy 462 (502)
T TIGR02734 385 VDWSVEGPRYRDRILAYLE-ERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAW-FRPHNRDRKIDNLY 462 (502)
T ss_pred CCcHHHHHHHHHHHHHHHH-HhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhccc-CCCCCCCCCCCCEE
Confidence 4577789999999999999 66 99999999999999999999999998886 776544333232 3554 468999999
Q ss_pred EeCCCccCCCChhHHhhhHHHHHHHHHHHhCCcc
Q 005823 622 CVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 622 laG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
+||++||||+|++||+.||++||+.|+++++...
T Consensus 463 l~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 463 LVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999988755
No 3
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=2e-52 Score=467.34 Aligned_cols=474 Identities=26% Similarity=0.376 Sum_probs=356.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
.||||||||++||+||.+|+++|++|+|+|+++.+||++++++++|+.||.|+|++.++.+. ..+.++++++|+.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~---~~~~~~~~~lg~~~~ 78 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPG---GIHARIFRELGIPLP 78 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcC---CHHHHHHHHcCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999875433 345677888998754
Q ss_pred -EeeCCCeEEEEcCCC-eEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhh-c---cchhhHHHhhh
Q 005823 238 -VIPDPTTVHFHLPND-LSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELK-S---LEEPIYLFGQF 311 (675)
Q Consensus 238 -~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 311 (675)
.........++++|| ..+.++.+.+.+.+++.+.+|.+.+ |+....+.+......... . ...+.. +...
T Consensus 79 ~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (492)
T TIGR02733 79 EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER----FWQLCSQLHQSNWRFAGRDPVLPPRNYWD-LLQL 153 (492)
T ss_pred ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH----HHHHHHHHHHHHHHHhhcCCCCCCCCHHH-HHHH
Confidence 233333455666887 5677889999999999999988743 333333333222111100 0 011111 1110
Q ss_pred hcC-hhhhhHHhhhccccHHHHHHHh--CCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHH-hhcCcccccCCCHHH
Q 005823 312 FKR-PLECLTLAYYLPQNAGNIARKY--IKDPQLLSFIDAECFIVSTINALQTPMINASMVLCD-RHFGGINYPVGGVGG 387 (675)
Q Consensus 312 ~~~-~~~~~~~~~~~~~s~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~g~~~p~gG~~~ 387 (675)
... .........+...++.++++++ +.++.++.+++..+..+.+..+.+.++.+..+.... ....|.++++||++.
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~GG~~~ 233 (492)
T TIGR02733 154 VSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGLWHLHGSMQT 233 (492)
T ss_pred HHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCceeecCcHHH
Confidence 000 0011112223457888999886 889999999988776555566667777665433322 223577889999999
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC-----CEEEcCEEEECCChhhHHhhccCCCCCChHHHHHH
Q 005823 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQ 462 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G-----~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~ 462 (675)
|+++|++.++++|++|+++++|++|..+++++++|++.+| +++.||.||+|+++..+. .|++++.+|++..+..
T Consensus 234 l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~-~ll~~~~~~~~~~~~~ 312 (492)
T TIGR02733 234 LSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLL-ELLGPLGLPPGYRKRL 312 (492)
T ss_pred HHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHH-HhcCcccCCHHHHHHH
Confidence 9999999999999999999999999999888878887665 578999999999998765 5777667777666666
Q ss_pred HhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccC
Q 005823 463 KLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGL 542 (675)
Q Consensus 463 ~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~ 542 (675)
..++++++.+++++++++...+.+...|..... ++.+.+|++.++ .||+++|+|++++++.++.+...|..+
T Consensus 313 ~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~-~d~~~aP~G~~~l~~~~~~~~~~~~~~ 384 (492)
T TIGR02733 313 KKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS-------DHQGSLFVSISQ-EGDGRAPQGEATLIASSFTDTNDWSSL 384 (492)
T ss_pred hcCCCCCceEEEEEeecccccCCCCCcceeecc-------CCCceEEEEeCC-ccccCCCCCceEEEEEcCCCHHHHcCC
Confidence 777778888899999998543322222222111 112357887755 578999999999988888877888766
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCc-ccCCCCCCCCCCCCCCCCCCCCCcEE
Q 005823 543 AQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGT-YGPMPRGTPKGLLGMPFNTTGINGLY 621 (675)
Q Consensus 543 ~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~-yg~~p~~~~~~~~~~p~~~t~i~gLy 621 (675)
++.+|++.|+++++++++.|+ +.+|+++++|+..++.||.||++|++..+|+ ||..+...+...+ ++..+|+++|||
T Consensus 385 ~~~~y~~~k~~~~~~il~~le-~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~-~~~~~t~i~gLy 462 (492)
T TIGR02733 385 DEEDYTAKKKQYTQTIIERLG-HYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPF-GLSSRTPVKGLW 462 (492)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCc-CCCCCCCCCCeE
Confidence 677899999999999999999 8899999999999999999999999998886 6655443332222 244579999999
Q ss_pred EeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 005823 622 CVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 622 laG~~~~pG~Gv~gA~~SG~~aA~~Il~~ 650 (675)
+||+++|||+|++|++.||+.||+.|++.
T Consensus 463 l~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 463 LCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred EecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999864
No 4
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.8e-54 Score=437.01 Aligned_cols=497 Identities=35% Similarity=0.520 Sum_probs=378.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCccee-EeeCCeEEccccccccCCCCCCchHH-HHHHHHHc
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY-YERDGYTFDVGSSVMFGFSDKGNLNL-ITQALAAV 232 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t-~~~~g~~~d~G~~~~~g~~~~~~~~~-~~~ll~~l 232 (675)
+++||++|||+|..||.||.+|+|.|.+|.|+|+....||.+.+ ..++|++|+.++..+-...+.+.... +.+..-.+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~~~~~~~l~r~gl~l 91 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPRGPQELELKRHGLRL 91 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhcccccccchHhhhhhhh
Confidence 56899999999999999999999999999999999777776655 45899999998776655444222111 11111111
Q ss_pred ----------------------CCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 005823 233 ----------------------GCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIF 290 (675)
Q Consensus 233 ----------------------Gl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 290 (675)
|.++...+++ ...|..+| ...++.+++|+.++...++...++.. +...++...
T Consensus 92 ~~r~p~sft~~~~~~lp~~lllg~dm~~n~~~-i~kfs~~d---a~~~peye~fl~~~~~~~~pl~d~~~-~~~~~~~~~ 166 (561)
T KOG4254|consen 92 HERSPCSFTPSLMGYLPEGLLLGRDMAENQKE-IAKFSQPD---ARAYPEYEKFLVELYGAIDPLLDAAP-ADPPLFIHG 166 (561)
T ss_pred ccCCCccccchhhccchhhhhhccccccchhh-hhhhcCCc---cccchhHHHHHHHHHhccchhhhccc-cccchhhhh
Confidence 1111111111 12222222 23445567777777766665544433 333334444
Q ss_pred HHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhC--CCHHHHHHHhhhhhhhccCCCCCchHHHHHH
Q 005823 291 NALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYI--KDPQLLSFIDAECFIVSTINALQTPMINASM 368 (675)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 368 (675)
............+|+.+.+.+..++...+....+.+.+ ..+.+|+ +++.+..+.|..++...+.....++......
T Consensus 167 ~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~~~ap~~--k~~~~~fesk~~ka~l~tDavi~~~asv~~pgt~yvllh~ 244 (561)
T KOG4254|consen 167 LLLVLYTLASTYAPLLLAGFIKMKPLGALYELLLAPIS--KVLNDWFESKDLKATLATDAVIGLLASVHTPGTGYVLLHH 244 (561)
T ss_pred hhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHHHhcchh--hHHhhhhhccchhhhhhHHHHHHhhcccCCCCcHHHHHHH
Confidence 44444444455566777777777777666655555544 3344444 4666777888888888877777777666554
Q ss_pred HH--HHhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh
Q 005823 369 VL--CDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG 446 (675)
Q Consensus 369 ~~--~~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~ 446 (675)
++ .+.+.++|.||.||+++++.++++.++++|++|.+++.|.+|..++++++||+++||+++.++.||+++++|.++.
T Consensus 245 vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~ 324 (561)
T KOG4254|consen 245 VLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFE 324 (561)
T ss_pred HHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHH
Confidence 55 6678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCChHHHHHHHhhc--------cCCcEEE---------EEEeeccccCCCCCCccceeeccchhhhccCCCceE
Q 005823 447 KLLKGEQLPKEEENFQKLYV--------KAPSFLS---------IHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIF 509 (675)
Q Consensus 447 ~Ll~~~~lp~~~~~~~~~~~--------~~~s~~~---------v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~ 509 (675)
+|++.+.+|++.. ++... ..++++. -+.++......++..+||.++.+.++.++...+.|+
T Consensus 325 kLlp~e~LPeef~--i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~ 402 (561)
T KOG4254|consen 325 KLLPGEALPEEFV--IQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIE 402 (561)
T ss_pred HhCCCccCCchhh--hhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEE
Confidence 9999999998752 22221 1222222 133333333344555677788887877878888899
Q ss_pred EecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHh
Q 005823 510 LSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYL 589 (675)
Q Consensus 510 ~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~ 589 (675)
+++||..||+++|+|+|+|++++....+.|++....+|++.|+++++++++.++ +++|+|++.++..++.||.|+++|+
T Consensus 403 ~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie-~l~Pgfsssv~~~dvgTP~t~qr~l 481 (561)
T KOG4254|consen 403 LSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIE-KLAPGFSSSVESYDVGTPPTHQRFL 481 (561)
T ss_pred EecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHH-HHcCCccceEEEEecCCCchhhHHh
Confidence 999999999999999999999999888999988777999999999999999999 9999999999999999999999999
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCC-----CCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhCCcccCcchhHH
Q 005823 590 ARDQGTYGPMPRGTPKGLLGMPFN-----TTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDAG 663 (675)
Q Consensus 590 ~~~~G~yg~~p~~~~~~~~~~p~~-----~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~~~~~~~~~~~ 663 (675)
+.++|+|++.+.....+.+.+|.. +|||+|||+||+++|||+||.+|. |+++|.....+....+....+|.+
T Consensus 482 ~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~A~~a~~~~~~~~~l~nl~v~ 558 (561)
T KOG4254|consen 482 GRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLAAHSAILDRKLYSDLKNLDVR 558 (561)
T ss_pred cCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHHHHHHhhhhhhHHHhhhhccc
Confidence 999999998888878888888877 899999999999999999999974 999999999988877666666554
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.2e-47 Score=418.17 Aligned_cols=469 Identities=30% Similarity=0.415 Sum_probs=339.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcC-C
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG-C 234 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG-l 234 (675)
+.+||||||||++||+||.+|+++|++|+||||++.+||+++|++..||+||+|++++.... .. .++++++ +
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~------~~-~~~~~l~~l 74 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPD------PG-PLFRELGNL 74 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCc------hH-HHHHHhccC
Confidence 46899999999999999999999999999999999999999999999999999998887432 22 4444555 3
Q ss_pred c---eeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005823 235 E---MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 235 ~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
+ +...+....+...+++|..+..+.+++.+...+...+|.+.+.+.++.....+.+..+........... +...
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 151 (487)
T COG1233 75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSE---LLLV 151 (487)
T ss_pred cccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhh---hhhc
Confidence 2 223333466677788899999999999999999999999999988888766555544433222211110 0012
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHH
Q 005823 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKS 391 (675)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~ 391 (675)
.......+.+..+...+..+++..+|.++.+++.+.....+.+ ..+...+ ....+.....+..|+++|+||++.|+++
T Consensus 152 ~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~-a~~~~~~~~~~~~G~~~p~GG~~al~~a 229 (487)
T COG1233 152 PDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPP-ALYLLLSHLGLSGGVFYPRGGMGALVDA 229 (487)
T ss_pred cccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchh-HHHHHHHHhcccCCeeeeeCCHHHHHHH
Confidence 2223334444555667788888888999999988877655544 4555555 3334444445668999999999999999
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcE
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSF 471 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~ 471 (675)
|++.++++|++|+++++|++|.+++++.++|+..+|+.+.+|.||+++.+ .+...+.+.. +. .+....+....+.
T Consensus 230 L~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~~--~~--~~~~~~~~~~~~a 304 (487)
T COG1233 230 LAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGEA--RR--PRYRGSYLKSLSA 304 (487)
T ss_pred HHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhhh--hh--hccccchhhhhHH
Confidence 99999999999999999999999999877888888877999999999998 4333343321 11 1122334445567
Q ss_pred EEEEEeeccccCCCCCCccceeeccchhhhccCCC-------ceEEecCCCCCCCCCCCCceEEE-EEecccchhhccCC
Q 005823 472 LSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYG-------SIFLSIPTVLDSSLAPEGHHILH-IFTICSIEDWEGLA 543 (675)
Q Consensus 472 ~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~s~~d~~~ap~G~~~l~-~~~~~~~~~w~~~~ 543 (675)
+..+++++.. .++...++.++..+.+..+...+. .+++++||..||+++|+|++.+. .+...+ .
T Consensus 305 l~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~-------~ 376 (487)
T COG1233 305 LSLYLGLKGD-LLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVP-------S 376 (487)
T ss_pred HHhccCCCCC-CcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecC-------c
Confidence 7778888775 333333333444443333333322 47899999999999999998322 222222 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCC-CCCCCcEEE
Q 005823 544 QKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN-TTGINGLYC 622 (675)
Q Consensus 544 ~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~-~t~i~gLyl 622 (675)
..+|++.++++.+. +..++ .++|+++++|+..++.+|.+++++.+.++|.+...+....+....+|.. .|+++|||+
T Consensus 377 ~~~~~~~~~~~~~~-~~~~~-~~~p~~~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl 454 (487)
T COG1233 377 LGDYDELKESLADA-IDALE-ELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYL 454 (487)
T ss_pred CCChHHHHHHHHHH-HHHHh-hcCCCcccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEE
Confidence 34567788888888 77787 8999999999999999999999998877887433333222233445554 599999999
Q ss_pred eCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 005823 623 VGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 623 aG~~~~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
||++||||.|++++..++..++..+..+.
T Consensus 455 ~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 455 VGASTHPGGGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred eCCcCCCCCCcchhhhhHHHHHhhhcccc
Confidence 99999999999998666666665555443
No 6
>PLN02612 phytoene desaturase
Probab=100.00 E-value=3e-32 Score=306.90 Aligned_cols=438 Identities=18% Similarity=0.267 Sum_probs=270.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee-CCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
....||+|||||++||+||++|+++|++|+|+|+.+.+||++.++.. +|+.+|.|.|++++..+ .+.++++++|
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~-----~~~~ll~elG 165 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP-----NVQNLFGELG 165 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCc-----hHHHHHHHhC
Confidence 34579999999999999999999999999999999999999999874 89999999999987533 3678899999
Q ss_pred CceeEeeCCCeEEEEcCC--CeEE--EEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHh
Q 005823 234 CEMEVIPDPTTVHFHLPN--DLSV--RVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFG 309 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~--g~~~--~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (675)
+............+.+++ +... .++. ..|.....+..++.. ...+ ...+.+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----------~~P~~l~~~~~~l~~-------~~~l---s~~~kl~~~~ 224 (567)
T PLN02612 166 INDRLQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAPLNGIWAILRN-------NEML---TWPEKIKFAI 224 (567)
T ss_pred CcccceecccceEEEecCCCCceeeCcCch-----------hcCChhhhhHHHHhc-------CccC---CHHHHHHHHH
Confidence 865433222222222221 1111 1110 011110111111100 0000 0000000000
Q ss_pred hhhcC-hhhhhHHhhhccccHHHHHHHhCCCHHHH-HHHhhhhhhhccCCCCCchHHHHHHHHHHh----hcCcccccCC
Q 005823 310 QFFKR-PLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDR----HFGGINYPVG 383 (675)
Q Consensus 310 ~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~g~~~p~g 383 (675)
..... .........+...++.+++++...++.+. .++..........++.+.++......+... +.....++.|
T Consensus 225 ~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G 304 (567)
T PLN02612 225 GLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDG 304 (567)
T ss_pred hhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecC
Confidence 00000 00000112344678889998876666554 466555444444566666665443222111 1123456666
Q ss_pred CH-HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHH
Q 005823 384 GV-GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENF 461 (675)
Q Consensus 384 G~-~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~ 461 (675)
+. +.++++|++.+++.|++|++|++|++|..+ ++++++|++.+|+++.||+||+|+++ ..+..|+++...+....+.
T Consensus 305 ~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~~Ll~~~~~~~~~~~~ 383 (567)
T PLN02612 305 NPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV-DILKLLLPDQWKEIPYFKK 383 (567)
T ss_pred CchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH-HHHHHhCcchhcCcHHHHH
Confidence 65 689999999999999999999999999985 55567788889999999999999976 4456777653333222223
Q ss_pred HHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhcc
Q 005823 462 QKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEG 541 (675)
Q Consensus 462 ~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~ 541 (675)
+..+. ..++++++++++++++.+ . .+ +++..+ +...++..++... +.+.++|+.++.+ +....++|.+
T Consensus 384 l~~l~-~~~v~~v~l~~dr~~~~~-~-~~-~~~~~~------~~~~~~~d~S~~~-~~~~~~~~~ll~~-~~~~a~~~~~ 451 (567)
T PLN02612 384 LDKLV-GVPVINVHIWFDRKLKNT-Y-DH-LLFSRS------PLLSVYADMSTTC-KEYYDPNKSMLEL-VFAPAEEWIS 451 (567)
T ss_pred HHhcC-CCCeEEEEEEECcccCCC-C-Cc-eeecCC------CCceeehhhhhcc-hhhcCCCCeEEEE-EEEcChhhhc
Confidence 33443 345889999999986422 1 12 233321 1212333232222 3345666665443 3445566754
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhCCCCc------CceEE-EEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCC
Q 005823 542 LAQKDYDAKKELVADEIINRLENKLFPGLK------QSIAF-REIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNT 614 (675)
Q Consensus 542 ~~~~~~~~~ke~~~~~il~~L~~~~~P~l~------~~i~~-~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~ 614 (675)
+ .+|++++.++++|+ +++|+.. ..++. ..+.+|.++ |...|...+ .+|..+
T Consensus 452 ~-------sdeei~e~vl~~L~-~lfp~~~~~~~~~~~i~~~~~v~~P~a~----------~~~~pg~~~----~rp~~~ 509 (567)
T PLN02612 452 R-------SDEDIIDATMKELA-KLFPDEISADQSKAKILKYHVVKTPRSV----------YKTVPNCEP----CRPLQR 509 (567)
T ss_pred C-------CHHHHHHHHHHHHH-HHCCcccccccCCceEEEEEEeccCCce----------EEeCCCCcc----cCcccc
Confidence 4 35899999999999 8999762 22333 456666653 333333221 256778
Q ss_pred CCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCC
Q 005823 615 TGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 615 t~i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
+|++|||||||||.++ ++|+||+.||++||++|+++++.
T Consensus 510 tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 510 SPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999775 48999999999999999999875
No 7
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.1e-31 Score=298.67 Aligned_cols=471 Identities=13% Similarity=0.150 Sum_probs=284.0
Q ss_pred hccccccccchhhh--cCCCCCCCCCC--CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe-eCCeE
Q 005823 131 LMAKTVMSVDNLVE--IGGNEGMSRGA--DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYT 205 (675)
Q Consensus 131 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~ 205 (675)
.++|+.+++..... ....+. +... +.++|+|||+|++||++|+.|+++|++|+|+|+.+.+||++.++. ..|+.
T Consensus 46 ~~l~r~~~d~~~~~~~~~~~~~-~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~ 124 (569)
T PLN02487 46 SSLDSNVSDMSVNAPKGLFPPE-PEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNH 124 (569)
T ss_pred HHHHHHhhhhhccccccccCCC-CcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcE
Confidence 46677777766544 222221 2222 346999999999999999999999999999999999999999886 57999
Q ss_pred EccccccccCCCCCCchHHHHHHHHHcCCceeEeeCCCeEEEEcCCCeEEEEcCC-----HHHHHHHHHHhCCCcHHHHH
Q 005823 206 FDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHRE-----YSDFVAELTSKFPHEKEGVL 280 (675)
Q Consensus 206 ~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~l~~~~p~~~~~~~ 280 (675)
+|.|.|++++.+ ..+.++++++|+..+.........+...++....+... +..+...+.+.. .-
T Consensus 125 ~e~G~h~~~~~~-----~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~-~L----- 193 (569)
T PLN02487 125 IEMGLHVFFGCY-----NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTN-QL----- 193 (569)
T ss_pred EecceeEecCCc-----HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCC-CC-----
Confidence 999999998743 35788999999975543322222232333433222100 000111111000 00
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh-hhhHHhhhccccHHHHHHHhCCCH-HHHHHHhhhhhhhccCCC
Q 005823 281 AFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL-ECLTLAYYLPQNAGNIARKYIKDP-QLLSFIDAECFIVSTINA 358 (675)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~ 358 (675)
...+++..... . ...+. ...+ ..+. .......+...++.++++++..++ .++.+++..+....+.++
T Consensus 194 ---s~~dklr~~~~-l----~~~~~--~~al-~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~ 262 (569)
T PLN02487 194 ---EPYDKARNALA-L----ATSPV--VRAL-VDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC 262 (569)
T ss_pred ---CHHHHHhhccc-c----cccch--hhhc-cCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH
Confidence 00000000000 0 00000 0000 0000 000011234578999999999877 677889988888888888
Q ss_pred CCchHHHHHHHHHH---hhc-CcccccCCCHHH-HHHHHHHHHHHcCcEEEecceeeEEEEeC---C--eEEEEEe---C
Q 005823 359 LQTPMINASMVLCD---RHF-GGINYPVGGVGG-IAKSLAKGLADKGSEILYKANVTKVILEQ---G--KAVGVRL---S 425 (675)
Q Consensus 359 ~~~p~~~~~~~~~~---~~~-~g~~~p~gG~~~-l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~---~--~v~gV~~---~ 425 (675)
+++++......+.. ... ....+++||... |++++++.++++|++|+++++|++|..++ + ++++|++ .
T Consensus 263 d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 263 DNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 88887765544332 111 236799999984 99999999999999999999999999973 2 3788988 3
Q ss_pred CCCEEEcCEEEECCChhhHHhhccCCCCCChHH-HHHHHhhccCCcEEEEEEeeccccCCCCC-Cc-cce----eeccch
Q 005823 426 DGREFYAKTIISNATRWDTFGKLLKGEQLPKEE-ENFQKLYVKAPSFLSIHMGVKAEVLPPDT-DC-HHF----VLEDDW 498 (675)
Q Consensus 426 ~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~-~~~~~~~~~~~s~~~v~l~l~~~~~p~~~-~~-~~~----~~~~~~ 498 (675)
+++++.+|.||+|++++.+ .+|+++. ++... ...+..+. +..++++++.+++++..+.. +. ..+ -+...|
T Consensus 343 ~~~~~~aD~VV~A~p~~~~-~~Llp~~-~~~~~~~~~l~~L~-~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~ 419 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGI-KRLLPEQ-WREYEFFDNIYKLV-GVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLL 419 (569)
T ss_pred CceEEECCEEEECCCHHHH-HHhCCch-hhccHHHhHHhcCC-CeeEEEEEEEecccccccccccccccccccccccccc
Confidence 4457899999999998854 6888763 22211 11222332 34588999999987643321 00 000 011112
Q ss_pred hhhccCCCceEEecCCCCCCC-C-C-CCCceEEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCc-e
Q 005823 499 NRLEEPYGSIFLSIPTVLDSS-L-A-PEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS-I 574 (675)
Q Consensus 499 ~~~~~~~~~i~~~~~s~~d~~-~-a-p~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~-i 574 (675)
+.......+|..+. ...+. + . .+| +.+.+.+.. .+.+. +..+|+++++++++|. +++|.+++. +
T Consensus 420 -~~~~~~~~f~~di~-l~~~~~~~~~~~g-~~l~~vis~-a~~~~-------~~~~~ei~~~~~~~L~-~~~p~~~~~~v 487 (569)
T PLN02487 420 -YSADADFSCFADLA-LTSPEDYYKEGEG-SLIQAVLTP-GDPYM-------PLSNDKIVEKVHKQVL-ELFPSSRGLEV 487 (569)
T ss_pred -cccCCCcceEeeee-cCCHHHHcccCCc-eEEEEEEcC-Ccccc-------CCCHHHHHHHHHHHHH-HhCcccccCce
Confidence 11111111111100 00011 1 1 123 334443332 23333 3346899999999999 999997654 3
Q ss_pred EEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhC
Q 005823 575 AFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 575 ~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
....+. ....++|...|... ..||..+|+++|||+|||||.++ .+|+||+.||+.||+.|++..+
T Consensus 488 ~~~~vv---------~~~~at~~~~pg~~----~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 488 TWSSVV---------KIGQSLYREAPGMD----PFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred EEEEEE---------EccCceeccCCCcc----ccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 332221 11244565555322 13688999999999999999765 4899999999999999988764
No 8
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-31 Score=295.14 Aligned_cols=419 Identities=20% Similarity=0.205 Sum_probs=268.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCceeE
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEMEV 238 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~~ 238 (675)
+|+|||||++||+||++|+++|++|+|+|+.+.+||++.++..+|+.+|.|.|++++. ...+.++++++|+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~-----~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKS-----DEALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccc-----cHHHHHHHHHcCCCCce
Confidence 5999999999999999999999999999999999999999999999999999998752 23578899999986443
Q ss_pred eeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCC-cH-HHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh
Q 005823 239 IPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPH-EK-EGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (675)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (675)
........+++. +....+ .+...+ .. ++. .. +.+... .... ....
T Consensus 76 ~~~~~~~~~~~~-~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~-------~~~~---~~~~---------------- 122 (434)
T PRK07233 76 RWRETKTGYYVD-GKLYPL-GTPLEL----LR-FPHLSLIDKFRLG-------LLTL---LARR---------------- 122 (434)
T ss_pred eeccCceEEEEC-CeEecC-CCHHHH----Hc-CCCCCHHHHHHhH-------HHHH---hhhh----------------
Confidence 332222233333 322211 122111 11 111 00 000000 0000 0000
Q ss_pred hhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhh-------cCcccccCCCHHHHH
Q 005823 317 ECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRH-------FGGINYPVGGVGGIA 389 (675)
Q Consensus 317 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~~g~~~p~gG~~~l~ 389 (675)
......+...++.+++.+.+.++.++.++...+....+..+.+.++......+.... ...+.+|+||++.++
T Consensus 123 -~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~ 201 (434)
T PRK07233 123 -IKDWRALDKVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLI 201 (434)
T ss_pred -cccccccccccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHH
Confidence 000112345778888888887777777887776666667778887755432221110 123678999999999
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCC
Q 005823 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAP 469 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~ 469 (675)
++|.+.+++.|++|+++++|++|..++++++.+. .+|+++.+|.||+|+++..+ ..++++ ++....+....+.+ .
T Consensus 202 ~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~-~~~~~~~ad~vI~a~p~~~~-~~ll~~--~~~~~~~~~~~~~~-~ 276 (434)
T PRK07233 202 DALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVE-VDGEEEDFDAVISTAPPPIL-ARLVPD--LPADVLARLRRIDY-Q 276 (434)
T ss_pred HHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEE-eCCceEECCEEEECCCHHHH-HhhcCC--CcHHHHhhhcccCc-c
Confidence 9999999999999999999999998888776555 56678999999999998665 467643 55544444455543 3
Q ss_pred cEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHH
Q 005823 470 SFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDA 549 (675)
Q Consensus 470 s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~ 549 (675)
+..+++++++.+..+ .++..+.+. +.++..+ ..++..++..+|+|++.+.+.++.+..+ ..|..
T Consensus 277 ~~~~~~l~~~~~~~~----~~~~~~~~~----~~~~~~~--~~~s~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~ 340 (434)
T PRK07233 277 GVVCMVLKLRRPLTD----YYWLNINDP----GAPFGGV--IEHTNLVPPERYGGEHLVYLPKYLPGDH------PLWQM 340 (434)
T ss_pred ceEEEEEEecCCCCC----CceeeecCC----CCCcceE--EEecccCCccccCCceEEEEeeecCCCC------hhhcC
Confidence 577889999876522 122222110 1223222 2345567777777877654443332222 12344
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcC-ceEEEEecChhHHHHHhcCCCCcccC-CCCCCCCCCCCCCCCCCCCCcEEEeCCCc
Q 005823 550 KKELVADEIINRLENKLFPGLKQ-SIAFREIGSPKTHRRYLARDQGTYGP-MPRGTPKGLLGMPFNTTGINGLYCVGDSC 627 (675)
Q Consensus 550 ~ke~~~~~il~~L~~~~~P~l~~-~i~~~~v~tP~~~~~~~~~~~G~yg~-~p~~~~~~~~~~p~~~t~i~gLylaG~~~ 627 (675)
.++++++++++.|+ +++|+++. .++...+. ++ ..++.. .|.. .-.+|...++++|||+||+++
T Consensus 341 ~~~~~~~~~~~~L~-~~~p~~~~~~~~~~~~~------r~----~~a~~~~~~g~----~~~~~~~~~~~~~l~~aG~~~ 405 (434)
T PRK07233 341 SDEELLDRFLSYLR-KMFPDFDRDDVRAVRIS------RA----PYAQPIYEPGY----LDKIPPYDTPIEGLYLAGMSQ 405 (434)
T ss_pred CHHHHHHHHHHHHH-HhCCCCChhheeeEEEE------Ee----ccccccccCch----hhcCCCcccCcCCEEEeCCcc
Confidence 57899999999999 89998853 34433321 11 111111 1110 012445567889999999964
Q ss_pred c--CCCChhHHhhhHHHHHHHHHHHhC
Q 005823 628 F--PGQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 628 ~--pG~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
. .+.+|++|+.||+.||++|++.+.
T Consensus 406 ~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 406 IYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 2 345899999999999999988764
No 9
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=1.2e-30 Score=288.54 Aligned_cols=444 Identities=15% Similarity=0.173 Sum_probs=259.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe-eCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
+|+|||||++||+||++|+++|++|+|+|+.+.+||+++++. ..|+.+|.|+|++++. ...+.++++++|+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~-----~~~~~~~~~~lg~~~~ 75 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC-----YANLFRLMKKVGAEDN 75 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc-----hHHHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999999974 6799999999999863 2347789999998754
Q ss_pred EeeCCCeEEEEcCCCeEEEEcC-----CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005823 238 VIPDPTTVHFHLPNDLSVRVHR-----EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
.........+...++....+.. .+......+.+ ++.- .+.+.. +........ + ....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~l-----s~~dkl-r~~~~~~~~-------~--~~~~~~ 139 (474)
T TIGR02732 76 LLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFT-TSQL-----KWVDKL-RNALALGTS-------P--IVRGLV 139 (474)
T ss_pred cccccceeEEEcCCCcccccccCCCCCCchhhhHHHhc-CCCC-----CHHHHH-HHHHHhhhh-------H--HHhhcc
Confidence 4333222222222232211110 00001111110 0000 000000 000000000 0 000000
Q ss_pred cChhhhhHHhhhccccHHHHHHHhCCCHH-HHHHHhhhhhhhccCCCCCchHHHHHH---HHHHhh-cCcccccCCCHHH
Q 005823 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQ-LLSFIDAECFIVSTINALQTPMINASM---VLCDRH-FGGINYPVGGVGG 387 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~-~~g~~~p~gG~~~ 387 (675)
...........+...++.++++++..++. ++.+++..+......+++++++..... .+.... .....+++||...
T Consensus 140 ~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~ 219 (474)
T TIGR02732 140 DYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDK 219 (474)
T ss_pred ccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcch
Confidence 00000011122345788999999988875 778888877777677888888765422 111111 1245678888765
Q ss_pred -HHHHHHHHHHHcCcEEEecceeeEEEEeC---C--eEEEEEeCCC---CEEEcCEEEECCChhhHHhhccCCCCCChHH
Q 005823 388 -IAKSLAKGLADKGSEILYKANVTKVILEQ---G--KAVGVRLSDG---REFYAKTIISNATRWDTFGKLLKGEQLPKEE 458 (675)
Q Consensus 388 -l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~---~--~v~gV~~~~G---~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~ 458 (675)
+.+.|.+.++++|++|+++++|++|..++ + ++++|++.+| +++.+|+||+|++++.+ ..|+++..-....
T Consensus 220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~-~~Ll~~~~~~~~~ 298 (474)
T TIGR02732 220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGI-KRLLPQEWRQFEE 298 (474)
T ss_pred hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHH-HhhCChhhhcCHH
Confidence 66889999999999999999999999864 2 3778888655 46899999999998865 5788752110112
Q ss_pred HHHHHhhccCCcEEEEEEeeccccCCCCC-Cccceee----ccchhhhccCCCceEEecCCCCCC-CCCCCCceE-EEEE
Q 005823 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDT-DCHHFVL----EDDWNRLEEPYGSIFLSIPTVLDS-SLAPEGHHI-LHIF 531 (675)
Q Consensus 459 ~~~~~~~~~~~s~~~v~l~l~~~~~p~~~-~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~d~-~~ap~G~~~-l~~~ 531 (675)
...+..+.+ .++.+|+++++++...+.. .....+. -+++-.+.+....+|..+ ....+ .+.++|... +.+.
T Consensus 299 ~~~l~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 376 (474)
T TIGR02732 299 FDNIYKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADL-ALTSPDDYYKEGQGSLLQCV 376 (474)
T ss_pred HhhHhcCCC-CCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehh-hccCHHHHhccCCCeEEEEE
Confidence 223334444 4588999999976533211 0000000 011100011100111110 01112 123334433 3333
Q ss_pred ecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCc-eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCC
Q 005823 532 TICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS-IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGM 610 (675)
Q Consensus 532 ~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~ 610 (675)
+... +++. +..+++++++++++|+ +++|.+.+. +....+ .....+.|...|... -.+
T Consensus 377 ~~~~-~~~~-------~~~~~~l~~~~~~~L~-~~~p~~~~~~~~~~~v---------~~~~~a~~~~~pg~~----~~~ 434 (474)
T TIGR02732 377 LTPG-DPWM-------PESNEEIAKRVDKQVR-ALFPSSKNLKLTWSSV---------VKLAQSLYREAPGMD----PFR 434 (474)
T ss_pred EeCh-hhhc-------CCCHHHHHHHHHHHHH-HhCccccCCceeEEEE---------EEecCceeccCCCCc----ccC
Confidence 3322 2332 2346899999999999 999986543 222111 111133444444322 136
Q ss_pred CCCCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHH
Q 005823 611 PFNTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 611 p~~~t~i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il 648 (675)
|..+|+++|||+||||+.++ .+|+||+.||+.||+.|+
T Consensus 435 P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 435 PDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 88899999999999999765 489999999999999874
No 10
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.97 E-value=7.6e-30 Score=282.78 Aligned_cols=424 Identities=18% Similarity=0.168 Sum_probs=253.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCc
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~ 235 (675)
.+|+|||||++||+||++|+++| ++|+|||+.+++||+++|...+|+.+|.|+|++++.. ..+.++++++|+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~-----~~~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARK-----PSAPALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCc-----HHHHHHHHHcCCc
Confidence 36999999999999999999988 8999999999999999999999999999999877532 2377899999987
Q ss_pred eeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 005823 236 MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGV--LAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (675)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (675)
...........+.+.+|....++... +. ..|...... ..++....+.... .. .. .
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~p~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~----------~ 132 (451)
T PRK11883 76 DELVANTTGQSYIYVNGKLHPIPPGT------VM-GIPTSIAPFLFAGLVSPIGKLRAA-AD-----LR----------P 132 (451)
T ss_pred cceecCCCCcceEEECCeEEECCCCC------ee-ccCCCchhhhcCCCCCHHHHHHhh-Cc-----cc----------C
Confidence 54433211122333445444433210 00 001000000 0000000000000 00 00 0
Q ss_pred ChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HH------------HHHhh-----
Q 005823 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MV------------LCDRH----- 374 (675)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~--~~------------~~~~~----- 374 (675)
.........++.+++++.+.+..++.++...+....+.++...++.... +. +....
T Consensus 133 -----~~~~~~~~~s~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (451)
T PRK11883 133 -----PRWKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK 207 (451)
T ss_pred -----CCCCCCCCcCHHHHHHHhccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCC
Confidence 0001123467788888777766666776665444444555555543221 00 00000
Q ss_pred --cCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCC
Q 005823 375 --FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (675)
Q Consensus 375 --~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~ 452 (675)
...+.+++||++.+++.|.+.+.+. +|+++++|++|..+++++ .|.+.+|+++.||+||+|+++..+. .++.+
T Consensus 208 ~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~-~l~~~- 282 (451)
T PRK11883 208 KTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDGY-EIVLSNGGEIEADAVIVAVPHPVLP-SLFVA- 282 (451)
T ss_pred CCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeE-EEEECCCCEEEcCEEEECCCHHHHH-HhccC-
Confidence 1134578999999999999988543 899999999999887765 4778899999999999999987754 55443
Q ss_pred CCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEe
Q 005823 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (675)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~ 532 (675)
+...+.+..+.+.+ ..++++.++.+.. .....+++++..+. +.++ ..+.+++...|..+|+|..++..+.
T Consensus 283 ---~~~~~~~~~~~~~~-~~~v~l~~~~~~~-~~~~~~~~~~~~~~---~~~~--~~~~~~s~~~~~~~p~g~~~~~~~~ 352 (451)
T PRK11883 283 ---PPAFALFKTIPSTS-VATVALAFPESAT-NLPDGTGFLVARNS---DYTI--TACTWTSKKWPHTTPEGKVLLRLYV 352 (451)
T ss_pred ---hhHHHHHhCCCCCc-eEEEEEEeccccC-CCCCceEEEecCCC---CCcE--EEEEeEcCcCCCCCCCCcEEEEEec
Confidence 22234455555554 6699999988742 12222344444221 0111 1233455566777888877666555
Q ss_pred cccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCC--CCCCC
Q 005823 533 ICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPK--GLLGM 610 (675)
Q Consensus 533 ~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~--~~~~~ 610 (675)
..+.+.+ .++..++++.+.+++.|+ ++++ +....+...+. + +..+|...+.+... ..+ +
T Consensus 353 ~~~~~~~------~~~~~~~~~~~~~~~~L~-~~~g-~~~~~~~~~~~------r----w~~a~p~~~~~~~~~~~~l-~ 413 (451)
T PRK11883 353 GRPGDEA------VVDATDEELVAFVLADLS-KVMG-ITGDPEFTIVQ------R----WKEAMPQYGVGHIERVAEL-R 413 (451)
T ss_pred CCCCCch------hccCCHHHHHHHHHHHHH-HHhC-CCCCceEEEEe------e----cCccCCCCCccHHHHHHHH-H
Confidence 4332221 123357899999999998 7663 33333332221 1 12222211111000 000 1
Q ss_pred CCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 005823 611 PFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 611 p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~ 650 (675)
+.... ++|||+||+|+. |.|+++|+.||+.+|++|+++
T Consensus 414 ~~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~~ 451 (451)
T PRK11883 414 AGLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLAE 451 (451)
T ss_pred Hhhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHhC
Confidence 11112 679999999975 789999999999999999763
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=1.2e-29 Score=281.98 Aligned_cols=423 Identities=15% Similarity=0.192 Sum_probs=260.3
Q ss_pred CccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHc
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (675)
.+||+|||||++||+||++|+++ |++|+|+|+.+++||+++|...+|+.+|.|+|++++.. ..+.++++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~-----~~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERK-----KSAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCC-----hHHHHHHHHc
Confidence 36899999999999999999999 99999999999999999999999999999999998532 2378899999
Q ss_pred CCceeEeeCCCeEEEE-cCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005823 233 GCEMEVIPDPTTVHFH-LPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 233 Gl~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
|++...........+. ..+|..+.++.....+.. ...-.-...+.... . .+
T Consensus 77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~---~~~~~~~~~~~~~~-------~------------------~~ 128 (462)
T TIGR00562 77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVK---TGLFSLGGKLRAGM-------D------------------FI 128 (462)
T ss_pred CCCcccccCCCCceEEEECCCceecCCCChHHHhc---CCCCCchhhHHhhh-------h------------------hc
Confidence 9865433222222222 232544444433222110 00000000000000 0 00
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HHHH------------Hh---h
Q 005823 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVLC------------DR---H 374 (675)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~------------~~---~ 374 (675)
.... .....++.+++++.+.++....+++..+....+.++.+.++.... +... .. .
T Consensus 129 ~~~~-------~~~d~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 201 (462)
T TIGR00562 129 RPAS-------PGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLP 201 (462)
T ss_pred cCCC-------CCCCcCHHHHHHHhcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccC
Confidence 0000 011357778888777776667777766554444555555543221 1000 00 0
Q ss_pred -----------cCc-ccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 375 -----------FGG-INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 375 -----------~~g-~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+. +..+.||++.++++|++.+.. ++|+++++|++|..++++++ |++++|+++.||+||+|+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~-v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 202 QGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRGSNYT-LELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred ccccccccccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecCCcEE-EEECCCcEEEcCEEEECCCHH
Confidence 011 456899999999999998852 68999999999998877664 788888889999999999987
Q ss_pred hHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCC
Q 005823 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP 522 (675)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap 522 (675)
.+ ..++++ +|....+.+..+.+.+ +.++.+.++.+.+........++.+++ .......+.+.+...|..+|
T Consensus 279 ~~-~~ll~~--~~~~~~~~l~~l~~~~-~~~v~l~~~~~~~~~~~~~~g~l~~~~-----~~~~~~~~i~~s~~~p~~~p 349 (462)
T TIGR00562 279 AA-AGLLSE--LSNSASSHLDKIHSPP-VANVNLGFPEGSVDGELEGFGFLISRS-----SKFAILGCIFTSKLFPNRAP 349 (462)
T ss_pred HH-HHHhcc--cCHHHHHHHhcCCCCc-eEEEEEEEchHHcCCCCCceEEEccCC-----CCCceEEEEEEccccCCcCC
Confidence 65 567753 6666666666666654 778899998765543322222232221 11111223334455577788
Q ss_pred CCceEEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCC
Q 005823 523 EGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRG 602 (675)
Q Consensus 523 ~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~ 602 (675)
+|+..++++...... .+.++..++++.+.+++.|. ++++ +...++...+. + +..+|-..+.+
T Consensus 350 ~g~~~l~~~~~g~~~------~~~~~~~~ee~~~~v~~~L~-~~~g-i~~~p~~~~v~------r----w~~a~P~~~~g 411 (462)
T TIGR00562 350 PGKTLLTAYIGGATD------ESIVDLSENEIINIVLRDLK-KVLN-INNEPEMLCVT------R----WHRAIPQYHVG 411 (462)
T ss_pred CCcEEEEEEeCCCCC------ccccCCCHHHHHHHHHHHHH-HHhC-CCCCCcEEEEe------E----ccccCCCCCCC
Confidence 888877776643211 11223346789999999998 7774 44333332221 1 11222111111
Q ss_pred CCCCCCC--CCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 005823 603 TPKGLLG--MPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 603 ~~~~~~~--~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
.. ..+. ++...++.+|||+||+|. .|.||++|+.+|..+|++|++.+
T Consensus 412 ~~-~~~~~i~~~l~~~~~~l~l~G~~~-~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 412 HD-QRLKEARELLESAYPGVFLTGNSF-EGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred hH-HHHHHHHHHHHhhCCCEEEecccc-CCCcHHHHHHHHHHHHHHHHHhh
Confidence 00 0000 000113357999999995 57899999999999999998765
No 12
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=2.7e-28 Score=270.28 Aligned_cols=424 Identities=19% Similarity=0.247 Sum_probs=247.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe-eCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
+|+|||||++||+||++|+++|++|+|+|+.+.+||++.|+. .+|+.+|.|.|++++.. ..+.++++++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~-----~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY-----PNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCC-----chHHHHHHHcCCccc
Confidence 589999999999999999999999999999999999999875 57999999999988543 246788999998643
Q ss_pred EeeCCCeEEEEcC--CCeEEE--EcCC--HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005823 238 VIPDPTTVHFHLP--NDLSVR--VHRE--YSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 238 ~~~~~~~~~~~~~--~g~~~~--~~~~--~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
.........+... ++.... .+.. .......+.+..+. .. +.+.. +....+. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~-~~~~~~~--------------~~~ 135 (453)
T TIGR02731 76 LQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDM--LT---WPEKI-KFAIGLL--------------PAI 135 (453)
T ss_pred eeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCC--CC---HHHHH-HHHHHhH--------------HHH
Confidence 3222221222211 111111 1100 00000000000000 00 00000 0000000 000
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhCCCHHHH-HHHhhhhhhhccCCCCCchHHHHHHHHHHhh--cCc--ccccCCC-H
Q 005823 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDRH--FGG--INYPVGG-V 385 (675)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~g--~~~p~gG-~ 385 (675)
.. .......+...++.+++++...++.+. .++........+.++.+.++......+.... ..+ ..+..|+ .
T Consensus 136 ~~---~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~ 212 (453)
T TIGR02731 136 VR---GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPP 212 (453)
T ss_pred hc---CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCCh
Confidence 00 000112345678889998876666654 4555554444445666666655432222111 111 1234444 4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCC-----EEEcCEEEECCChhhHHhhccCCCCCC-hHH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGR-----EFYAKTIISNATRWDTFGKLLKGEQLP-KEE 458 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~-----~i~ad~VI~A~g~~~~~~~Ll~~~~lp-~~~ 458 (675)
+.++++|.+.++++|++|++|++|++|..+ ++++++|++.+|+ ++.+|.||+|+++.. +..+++.. .+ ...
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~-~~~~~~ 290 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQP-WKQMPF 290 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchh-hhcCHH
Confidence 789999999999999999999999999864 5568889887765 799999999999865 56777542 22 222
Q ss_pred HHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchh
Q 005823 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIED 538 (675)
Q Consensus 459 ~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~ 538 (675)
.+....++ ..++++++++++++.+.+. ++++..+ +.......+..... ...++++.++.+++. ..+.
T Consensus 291 ~~~~~~~~-~~~~~~v~l~~~~~~~~~~----~~~~~~~------~~~~~~~~~s~~~~-~~~~~~~~l~~~~~~-~~~~ 357 (453)
T TIGR02731 291 FQKLNGLE-GVPVINVHIWFDRKLTTVD----HLLFSRS------PLLSVYADMSETCK-EYADPDKSMLELVFA-PAAD 357 (453)
T ss_pred HHHhhcCC-CCcEEEEEEEEccccCCCC----ceeeeCC------CcceeecchhhhCh-hhcCCCCeEEEEEec-Chhh
Confidence 22333444 3458899999998864322 2222211 11001111111111 123445555554332 2234
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhCCCC------cCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCC
Q 005823 539 WEGLAQKDYDAKKELVADEIINRLENKLFPGL------KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPF 612 (675)
Q Consensus 539 w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l------~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~ 612 (675)
|.+ ..+|++.+.++++|+ +++|+. .+.+...++..|.+ .|...|. .. ..+|.
T Consensus 358 ~~~-------~~~ee~~~~v~~~L~-~~~~~~~~~~~~~~~~~~~~~~~p~a----------~~~~~pg-~~---~~~~~ 415 (453)
T TIGR02731 358 WIG-------RSDEEIIDATMAELA-KLFPNHIKADSPAKILKYKVVKTPRS----------VYKTTPG-RQ---QYRPH 415 (453)
T ss_pred hhc-------CCHHHHHHHHHHHHH-HhCCcccCCCCCceEEEEEEEECCCc----------eeccCCC-Ch---hhCcc
Confidence 432 356899999999999 899852 12344556666654 1212222 10 12455
Q ss_pred CCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHH
Q 005823 613 NTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRV 647 (675)
Q Consensus 613 ~~t~i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~I 647 (675)
.++|++||||||+++.++ ++|+||+.||++||++|
T Consensus 416 ~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 416 QKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred ccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 678899999999998443 28999999999999987
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=3.7e-28 Score=269.89 Aligned_cols=426 Identities=15% Similarity=0.152 Sum_probs=249.6
Q ss_pred ccEEEECCChhHHHHHHHHHHc------CCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHH
Q 005823 158 YDAIVIGSGIGGLVAATQLAVK------GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~------g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (675)
.+|+|||||++||+||++|++. |++|+|||+.+++||+++|.+..|+.+|.|+|++++. ...+.+++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~-----~~~~~~l~~~ 76 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVAR-----NEHVMPLVKD 76 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcC-----CHHHHHHHHH
Confidence 3699999999999999999986 3799999999999999999999999999999998752 2346799999
Q ss_pred cCCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHH--HHHHHHHHHHHhhhhhhhccchhhHHHh
Q 005823 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLA--FYGECWKIFNALNSLELKSLEEPIYLFG 309 (675)
Q Consensus 232 lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (675)
+|++...........+.+.++....++.... . .+|.....+.. ++....+ ...+ .
T Consensus 77 lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~-~~p~~~~~~~~~~~~~~~~~-~~~~---------------~ 133 (463)
T PRK12416 77 LNLEEEMVYNETGISYIYSDNTLHPIPSDTI------F-GIPMSVESLFSSTLVSTKGK-IVAL---------------K 133 (463)
T ss_pred cCCccceecCCCCceEEEECCeEEECCCCCe------e-cCCCChHHhhcCCcCCHHHH-HHhh---------------h
Confidence 9987655433322233233343333322110 0 00100000000 0000000 0000 0
Q ss_pred hhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH--------------HH---
Q 005823 310 QFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL--------------CD--- 372 (675)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~--------------~~--- 372 (675)
..+.... ......++.+++++.+.++..+.++...+....+.++.+.++......+ ..
T Consensus 134 ~~~~~~~-----~~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~ 208 (463)
T PRK12416 134 DFITKNK-----EFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKK 208 (463)
T ss_pred hhccCCC-----CCCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhh
Confidence 0000000 0123567888888888777766777766554444566666543211100 00
Q ss_pred ----hhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhc
Q 005823 373 ----RHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKL 448 (675)
Q Consensus 373 ----~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~L 448 (675)
.....+.+++||++.|+++|++.+.+ ++|+++++|++|..+++++ .|++.+|+++.||+||+|+++..+ ..|
T Consensus 209 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~VI~a~p~~~~-~~l 284 (463)
T PRK12416 209 QFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRY-EISFANHESIQADYVVLAAPHDIA-ETL 284 (463)
T ss_pred ccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEE-EEEECCCCEEEeCEEEECCCHHHH-Hhh
Confidence 00123557899999999999999865 6899999999999988875 588888888999999999986654 677
Q ss_pred cCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEE
Q 005823 449 LKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHIL 528 (675)
Q Consensus 449 l~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l 528 (675)
+.++.++.. +..+.+ .++.+++++++.+.+........++.+++ .+...--+.+.+...+...+++..++
T Consensus 285 l~~~~l~~~----~~~~~~-~~~~~v~l~~~~~~~~~~~~g~G~l~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~l~ 354 (463)
T PRK12416 285 LQSNELNEQ----FHTFKN-SSLISIYLGFDILDEQLPADGTGFIVTEN-----SDLHCDACTWTSRKWKHTSGKQKLLV 354 (463)
T ss_pred cCCcchhHH----HhcCCC-CceEEEEEEechhhcCCCCCceEEEeeCC-----CCCeEEEEEeecCCCCCcCCCCeEEE
Confidence 765444432 334443 36889999998654321111122333321 11100011223333344455555455
Q ss_pred EEEecc---cchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCC--
Q 005823 529 HIFTIC---SIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGT-- 603 (675)
Q Consensus 529 ~~~~~~---~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~-- 603 (675)
.++... ..++|. +..+|++.+.++++|+ +++ ++....+...+.. | ..++-....+.
T Consensus 355 ~~~~~~~~~~~~~~~-------~~~dee~~~~~~~~L~-~~l-G~~~~p~~~~v~~---W-------~~a~P~y~~~~~~ 415 (463)
T PRK12416 355 RMFYKSTNPVYETIK-------NYSEEELVRVALYDIE-KSL-GIKGEPEVVEVTN---W-------KDLMPKYHLEHNQ 415 (463)
T ss_pred EEEeCCCCCCchhhh-------cCCHHHHHHHHHHHHH-HHh-CCCCCceEEEEEE---c-------cccCCCcCcCHHH
Confidence 444431 112222 2246889999999998 777 3443333333211 1 11111000000
Q ss_pred CCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 005823 604 PKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 604 ~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
....+. +....+.+|||+||++ +.|.||++|+.||+.+|++|++.+
T Consensus 416 ~~~~~~-~~l~~~~~~l~~aG~~-~~g~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 416 AVQSLQ-EKMMNLYPNIYLAGAS-YYGVGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred HHHHHH-HHHHhhCCCeEEeccc-cccccHHHHHHHHHHHHHHHHHHh
Confidence 000000 1111345899999999 458899999999999999998764
No 14
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=266.46 Aligned_cols=427 Identities=16% Similarity=0.124 Sum_probs=256.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
.+..||+|||||++||+||++|+++|++|+|+|+.+++||++.|...+|+.+|.|+|+++.. ...+.+++++++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~-----~~~~~~l~~~l~~ 76 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSK-----SPEVMDLWNEILP 76 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccC-----CHHHHHHHHHhcC
Confidence 35679999999999999999999999999999999999999999999999999999998742 2346788888875
Q ss_pred ceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 005823 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (675)
.-..........+++ +|....++.+...++. ..+. . ........... ....
T Consensus 77 ~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~l~----~~~~--~---~~~~~~~~~~~------------------~~~~- 127 (479)
T PRK07208 77 DDDFLLRPRLSRIYY-RGKFFDYPLKAFDALK----NLGL--W---RTAKCGASYLK------------------ARLR- 127 (479)
T ss_pred CCccccccccceEEE-CCEEecCCcchhHHHH----hCCH--h---HHHHHHHHHHH------------------HhcC-
Confidence 222222111112222 3444333322111111 0000 0 00000000000 0000
Q ss_pred hhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH-----------HH-HHHh---------
Q 005823 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS-----------MV-LCDR--------- 373 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-----------~~-~~~~--------- 373 (675)
+ .....++.+++.+.+.++..+.++..++....+.++.+.++.+.. +. ....
T Consensus 128 ~-------~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (479)
T PRK07208 128 P-------RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNK 200 (479)
T ss_pred C-------CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCC
Confidence 0 012467888888877777777777777665555666666654311 00 0000
Q ss_pred -----hcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCe-EEEEEe--CCCC--EEEcCEEEECCChhh
Q 005823 374 -----HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRL--SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 374 -----~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~-v~gV~~--~~G~--~i~ad~VI~A~g~~~ 443 (675)
....+.+|+||++.++++|.+.+++.|++|++|++|++|..++++ ++.+.. .+|+ ++.||+||+|++++.
T Consensus 201 ~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 201 EVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred CccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 012456889999999999999999999999999999999998765 444443 2453 588999999999887
Q ss_pred HHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCC
Q 005823 444 TFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPE 523 (675)
Q Consensus 444 ~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~ 523 (675)
+. .++.+ .+|....+....+.+. ++++++++++++...+ .+++++.+. ..+++. +..++.++|..+|+
T Consensus 281 l~-~~l~~-~~~~~~~~~~~~l~~~-~~~~v~l~~~~~~~~~---~~~~~~~~~----~~~~~r--~~~~~~~~~~~~p~ 348 (479)
T PRK07208 281 LV-AALDP-PPPPEVRAAAAGLRYR-DFITVGLLVKELNLFP---DNWIYIHDP----DVKVGR--LQNFNNWSPYLVPD 348 (479)
T ss_pred HH-HhcCC-CCCHHHHHHHhCCCcc-eeEEEEEEecCCCCCC---CceEEecCC----CCccce--ecccccCCcccCCC
Confidence 75 45553 4666655555566554 4788999998764222 234443321 011111 23345667888899
Q ss_pred Cce-EEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCC
Q 005823 524 GHH-ILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRG 602 (675)
Q Consensus 524 G~~-~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~ 602 (675)
|++ .+.+..+... + ...+...+|++.+.+++.|+ ++.+--.+.++..++.. + ..+|.....+
T Consensus 349 g~~~~l~~~~~~~~-~-----~~~~~~~deel~~~~~~~L~-~l~~~~~~~~~~~~v~r---~-------~~a~P~y~~~ 411 (479)
T PRK07208 349 GRDTWLGLEYFCFE-G-----DDLWNMSDEDLIALAIQELA-RLGLIRPADVEDGFVVR---V-------PKAYPVYDGT 411 (479)
T ss_pred CCceEEEEEEEccC-C-----CccccCCHHHHHHHHHHHHH-HcCCCChhheeEEEEEE---e-------cCcccCCCch
Confidence 885 2222111110 0 11223346789999999998 66431134444433211 0 1111111000
Q ss_pred CCCCCCCCCCCCCCCCcEEEeCCCc-cCCCChhHHhhhHHHHHHHHHHHh
Q 005823 603 TPKGLLGMPFNTTGINGLYCVGDSC-FPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 603 ~~~~~~~~p~~~t~i~gLylaG~~~-~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
.....-..-...++.+|||++|.++ +.-..+++|+.||..+|+.|.+..
T Consensus 412 ~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 412 YERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred HHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 0000000000225678999999875 334589999999999999998874
No 15
>PLN02268 probable polyamine oxidase
Probab=99.96 E-value=9.2e-28 Score=264.64 Aligned_cols=418 Identities=19% Similarity=0.188 Sum_probs=235.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
.+|||||||++||+||+.|.++|++|+|||+.+++||++.|....|+.+|.|++++++... .+.+.++++++|++..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~---~~~~~~l~~~lgl~~~ 77 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCN---ENPLAPLIGRLGLPLY 77 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCC---CchHHHHHHHhCCceE
Confidence 3799999999999999999999999999999999999999988889999999999986321 1236789999998643
Q ss_pred EeeCCCeEEEEcCCC-eEEEEc-CCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcCh
Q 005823 238 VIPDPTTVHFHLPND-LSVRVH-REYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRP 315 (675)
Q Consensus 238 ~~~~~~~~~~~~~~g-~~~~~~-~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (675)
...... .+.+.++ ....+. .... ..| ......+.....++........
T Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~------------------ 127 (435)
T PLN02268 78 RTSGDN--SVLYDHDLESYALFDMDGN--------QVP--QELVTKVGETFERILEETEKVR------------------ 127 (435)
T ss_pred eccCCc--cccccccccccceecCCCC--------CCC--HHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 221111 1111111 000000 0000 000 0000011000011111000000
Q ss_pred hhhhHHhhhccccHHHHHHHhCCCH-------HHHHHHhhhh---hhhccCCCCCchHHHHHHHHHHhhcCcccccCCCH
Q 005823 316 LECLTLAYYLPQNAGNIARKYIKDP-------QLLSFIDAEC---FIVSTINALQTPMINASMVLCDRHFGGINYPVGGV 385 (675)
Q Consensus 316 ~~~~~~~~~~~~s~~~~~~~~~~~~-------~l~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~ 385 (675)
.......++.+++++++... .-+.+++... ..+.+.++.+.++..... .....++..++.+|+
T Consensus 128 -----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~~~~~g~~~~~~~G~ 200 (435)
T PLN02268 128 -----DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--EELLEGGHGLMVRGY 200 (435)
T ss_pred -----hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--ccccCCCceeecCCH
Confidence 00011234444443332111 1122221110 011123344443321100 001122334577899
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc-CCCCCChHHHHHHHh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL-KGEQLPKEEENFQKL 464 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll-~~~~lp~~~~~~~~~ 464 (675)
+.++++|.+ |++|+++++|++|...+++++ |++.+|+++.||+||+|+++..+...++ -.+.+|..+++.+..
T Consensus 201 ~~l~~~l~~-----~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~ 274 (435)
T PLN02268 201 DPVINTLAK-----GLDIRLNHRVTKIVRRYNGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISD 274 (435)
T ss_pred HHHHHHHhc-----cCceeCCCeeEEEEEcCCcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHh
Confidence 999998865 457999999999998877765 8888898899999999998776532222 235688888777777
Q ss_pred hccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccc-hhhccCC
Q 005823 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSI-EDWEGLA 543 (675)
Q Consensus 465 ~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~-~~w~~~~ 543 (675)
+.++. ..++++.+++++|+.. .....+.+..+ .. ..+... ..+.|+.++.++..... ..+.
T Consensus 275 ~~~g~-~~Kv~l~f~~~fw~~~-~~~g~~~~~~~-----~~-~~~~~~-------~~~~g~~~l~~~~~g~~a~~~~--- 336 (435)
T PLN02268 275 LGVGI-ENKIALHFDSVFWPNV-EFLGVVAPTSY-----GC-SYFLNL-------HKATGHPVLVYMPAGRLARDIE--- 336 (435)
T ss_pred CCccc-eeEEEEEeCCCCCCCC-ceeeccCCCCC-----Cc-eEEEec-------ccCCCCCEEEEEeccHHHHHHH---
Confidence 76654 6789999999887542 11111111100 00 111111 11245566665554321 1222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEe
Q 005823 544 QKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCV 623 (675)
Q Consensus 544 ~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLyla 623 (675)
+..++++.+.+++.|. +++|.....+. ..+ ..|... ....|+|...+.+..... .+..+.|+++||||
T Consensus 337 ----~~~~~e~~~~v~~~L~-~~~~~~~~p~~-~~~---~~W~~d-p~~~G~~~~~~~g~~~~~--~~~l~~p~~~l~FA 404 (435)
T PLN02268 337 ----KLSDEAAANFAMSQLK-KMLPDATEPVQ-YLV---SRWGSD-PNSLGCYSYDLVGKPHDL--YERLRAPVDNLFFA 404 (435)
T ss_pred ----hCCHHHHHHHHHHHHH-HHcCCCCCccE-EEe---cccCCC-CCCCccCCCCCCCCCHHH--HHHHhCCCCCeEEe
Confidence 2346789999999999 88875432222 111 122211 112566654332211111 12345678999999
Q ss_pred CCCccCC--CChhHHhhhHHHHHHHHHHHh
Q 005823 624 GDSCFPG--QGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 624 G~~~~pG--~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
|+.|... +.|+||+.||++||++|++.+
T Consensus 405 Ge~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 405 GEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred eccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9998653 379999999999999998754
No 16
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=7.9e-28 Score=256.93 Aligned_cols=417 Identities=19% Similarity=0.202 Sum_probs=273.0
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCce
Q 005823 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
.|+|||||++||+||++|++++ ++|+|||+++++||..+|+..+|+.+|.|+|.+..- -..+.++++++|++.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-----~~~~l~li~eLGled 76 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-----KEEILDLIKELGLED 76 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc-----hHHHHHHHHHhCcHH
Confidence 5999999999999999999999 999999999999999999999999999999998853 145778999999987
Q ss_pred eEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh
Q 005823 237 EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (675)
..+.......+.+.+|+.+.++....-.+..+. .+ +...+..... .+...+
T Consensus 77 ~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~--~~-~~~~~~~~~~-------------------------~~~~~~- 127 (444)
T COG1232 77 KLLWNSTARKYIYYDGKLHPIPTPTILGIPLLL--LS-SEAGLARALQ-------------------------EFIRPK- 127 (444)
T ss_pred hhccCCcccceEeeCCcEEECCccceeecCCcc--cc-chhHHHHHHH-------------------------hhhccc-
Confidence 766433333355566766666544211100000 00 0111111100 000000
Q ss_pred hhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HHHHHh-------------h------c
Q 005823 317 ECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVLCDR-------------H------F 375 (675)
Q Consensus 317 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~-------------~------~ 375 (675)
......+.++.+++++.+.++.+..++........+.+.+..++.... ...... . .
T Consensus 128 ---~~~~~~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~ 204 (444)
T COG1232 128 ---SWEPKQDISVGEFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKK 204 (444)
T ss_pred ---CCCCCCCcCHHHHHHHHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccc
Confidence 001223567889999999888888888777665555666666654111 000000 0 0
Q ss_pred CcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCC
Q 005823 376 GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLP 455 (675)
Q Consensus 376 ~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp 455 (675)
.-..+++||++.+.++|++.+... |+++++|+.|..+.... ++.+.+|+++.||.||+|++++.+ ..++++..
T Consensus 205 ~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~-~~~~~~g~~~~~D~VI~t~p~~~l-~~ll~~~~-- 277 (444)
T COG1232 205 EKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKGAGK-TIVDVGGEKITADGVISTAPLPEL-ARLLGDEA-- 277 (444)
T ss_pred ccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcCCcc-EEEEcCCceEEcceEEEcCCHHHH-HHHcCCcc--
Confidence 124578999999999999999765 99999999999885444 366788888999999999998775 57777621
Q ss_pred hHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEeccc
Q 005823 456 KEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS 535 (675)
Q Consensus 456 ~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~ 535 (675)
......++. ..+..+|.++++.+..+...+.+++.+.++ .++ .-.+.++|..-|...|+|++++.+....+
T Consensus 278 --~~~~~~~~~-~~s~~~vv~~~~~~~~~~~~~~~g~~iad~-----~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~ 348 (444)
T COG1232 278 --VSKAAKELQ-YTSVVTVVVGLDEKDNPALPDGYGLLIADD-----DPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGP 348 (444)
T ss_pred --hhhhhhhcc-ccceEEEEEEeccccccCCCCceEEEEecC-----CCc-ceeEEEecccCCCCCCCCcEEEEEEeecC
Confidence 122334443 345778888998863333334467777653 232 23456788888999999999998888765
Q ss_pred chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCc--ccCCCCCCCCCCCCCCCC
Q 005823 536 IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGT--YGPMPRGTPKGLLGMPFN 613 (675)
Q Consensus 536 ~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~--yg~~p~~~~~~~~~~p~~ 613 (675)
.++|. +.+.+|++.+.+++.|. ++++...+.. ..++. .+..+. |..-....... + +...
T Consensus 349 g~~~~------~~~~dee~~~~~l~~L~-~~~~~~~~~~-~~~v~---------r~~~~~PqY~vG~~~~~~~-i-r~~l 409 (444)
T COG1232 349 GDESV------STMSDEELVAAVLDDLK-KLGGINGDPV-FVEVT---------RWKYAMPQYEVGHLDRLEP-I-RAAL 409 (444)
T ss_pred CCcch------hccCHHHHHHHHHHHHH-HHcCcCcchh-heeee---------eccccCCccchhHHHHHHH-H-HHhh
Confidence 44432 34457999999999999 8886555443 22221 111121 11100000000 0 1111
Q ss_pred CCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHH
Q 005823 614 TTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 614 ~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il 648 (675)
.+..+|++.+|.| ..|.|+++|+.+|..||+.++
T Consensus 410 ~~~y~gi~~~G~~-~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 410 KGAYPGIKSVGRY-GEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred ccccCCeEEeccC-CCCCCchHHHHHHHHHHHHhh
Confidence 1234899999999 456899999999999999875
No 17
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=2.4e-27 Score=265.74 Aligned_cols=427 Identities=18% Similarity=0.170 Sum_probs=252.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
...+||+|||||++||+||++|+++ |++|+|+|+.+++||++.|...+|+.+|.|+|++... ...+..+++. |
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~-----~~~~~~l~~~-g 83 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPS-----DPELTSAVDS-G 83 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccC-----cHHHHHHHHc-C
Confidence 3457999999999999999999999 9999999999999999999999999999999999742 2345555555 7
Q ss_pred CceeEee-CCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005823 234 CEMEVIP-DPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 234 l~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
+...... .+....+.+.+|....++.+...+. ...+-.....+... ... +...
T Consensus 84 l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~---~~~~~~~~~~~~~~-------~~~---~~~~------------- 137 (496)
T PLN02576 84 LRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLP---TFDLLSAPGKIRAG-------LGA---FGWK------------- 137 (496)
T ss_pred ChhheecCCCCceEEEEECCEEEEcCCChHHhc---CcCcCChhHHHHHh-------HHH---hhcc-------------
Confidence 6543322 2223333444666555554432211 00000000000000 000 0000
Q ss_pred cChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH--H-------------HHh----
Q 005823 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV--L-------------CDR---- 373 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~--~-------------~~~---- 373 (675)
... ......++.+++++.+.++....++........+.++.+.++....-. . ...
T Consensus 138 -~~~-----~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~ 211 (496)
T PLN02576 138 -RPP-----PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAK 211 (496)
T ss_pred -CCC-----CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhc
Confidence 000 001246788888888887777788777665555556666555432110 0 000
Q ss_pred ---------------hcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe--CCCC-EEEcCEE
Q 005823 374 ---------------HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDGR-EFYAKTI 435 (675)
Q Consensus 374 ---------------~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~--~~G~-~i~ad~V 435 (675)
.....+.++||++.|+++|++.+.+ .+|++|++|++|..++++.+.|++ .+|+ ++.||+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~V 289 (496)
T PLN02576 212 KNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAV 289 (496)
T ss_pred ccccccccccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEE
Confidence 0012356789999999999987721 589999999999987765123443 3554 6999999
Q ss_pred EECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCC------CCccceeeccchhhhccCCCceE
Q 005823 436 ISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD------TDCHHFVLEDDWNRLEEPYGSIF 509 (675)
Q Consensus 436 I~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~i~ 509 (675)
|+|+++..+ ..++.+ .++...+.+..+.+.+ +.+|++.++++.|+.+ ........+.. .....+.
T Consensus 290 I~a~P~~~l-~~ll~~--~~~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~-----~~~~~lg 360 (496)
T PLN02576 290 VMTAPLYVV-SEMLRP--KSPAAADALPEFYYPP-VAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRK-----QGVKTLG 360 (496)
T ss_pred EECCCHHHH-HHHhcc--cCHHHHHHhccCCCCc-eEEEEEEEchHHcccccccCCCCCceEEEccCC-----CCCceEE
Confidence 999987765 566653 4444555566665554 6789999988765441 11111111110 0111122
Q ss_pred EecCCCCCCCCCCCCceEEEEEeccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc-CceEEEEecChhHHHH
Q 005823 510 LSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRR 587 (675)
Q Consensus 510 ~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~v~tP~~~~~ 587 (675)
+...+...|.+.|+++..+..++... ...+ ++..++++.+.++++|. ++++.-. ...+...+. .|
T Consensus 361 ~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~-------~~~s~ee~~~~~~~~L~-~~~g~~~~~~p~~~~~~---~w-- 427 (496)
T PLN02576 361 TIYSSSLFPDRAPEGRVLLLNYIGGSRNTGI-------ASASEEELVEAVDRDLR-KLLLKPGAPPPKVVGVR---VW-- 427 (496)
T ss_pred EEeecCcCCCCCCCCCEEEEEEECCCCCccc-------ccCCHHHHHHHHHHHHH-HHhCCCCCCCCcEEEEe---Ec--
Confidence 23345556677787776666655432 1222 23346789999999998 7775321 111111110 01
Q ss_pred HhcCCCCcccCCCCCCCCCCCCCCCC---CCCC--CcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhC
Q 005823 588 YLARDQGTYGPMPRGTPKGLLGMPFN---TTGI--NGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 588 ~~~~~~G~yg~~p~~~~~~~~~~p~~---~t~i--~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
..++-..+.+.. . ..+.. .... +|||+||+|+. |.|+++|+.||+.+|++|++.+.
T Consensus 428 -----~~a~P~~~~g~~-~--~~~~~~~~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 428 -----PKAIPQYLLGHL-D--VLEAAEKMEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred -----CcccCCCCcCHH-H--HHHHHHHHHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHHHHh
Confidence 111111110000 0 00000 0122 79999999964 78999999999999999998764
No 18
>PLN02676 polyamine oxidase
Probab=99.96 E-value=7.9e-27 Score=258.28 Aligned_cols=430 Identities=14% Similarity=0.125 Sum_probs=244.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
...+||+|||||++||+||++|+++|. +|+|+|+.+++||++.+....|+.+|.|++++.+.... ..+.+.++++++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~-~~~~~~~l~~~~g 102 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGP-ESNPIWELANKLK 102 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCc-ccChHHHHHHhcC
Confidence 346899999999999999999999998 59999999999999999888999999999999864321 2345678888999
Q ss_pred CceeEeeCCC-eEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005823 234 CEMEVIPDPT-TVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 234 l~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
+.....+... ...++..+|.... ....+.+. ..+....+........ ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~----------- 154 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYKQDGGLYP-----KKVVQKSM-----------KVADASDEFGENLSIS-LSAK----------- 154 (487)
T ss_pred CceeecCccccceeEECCCCCCCC-----HHHHHHHH-----------HHHHHHHHHHHHHHHh-hccc-----------
Confidence 8754322111 2222223443221 11111111 1111111100000000 0000
Q ss_pred cChhhhhHHhhhccccH--HHHHHHhCCC---HHHHHHHhhhhhhhccCCCCCchHHHHHH-HHHHhhcCccccc--CCC
Q 005823 313 KRPLECLTLAYYLPQNA--GNIARKYIKD---PQLLSFIDAECFIVSTINALQTPMINASM-VLCDRHFGGINYP--VGG 384 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~--~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~p--~gG 384 (675)
.....+. .+.+.+.... .....++.. ....+..+...++..... .......+..++. +||
T Consensus 155 ----------~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G 222 (487)
T PLN02676 155 ----------KAVDISILTAQRLFGQVPKTPLEMVIDYYNY--DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRG 222 (487)
T ss_pred ----------CCCCccHHHHHHHHhhCCCCHHHHHHHHHhc--cceeccCccccchhhcCcccccccCCCceEEeecCCC
Confidence 0000011 1112222210 111111111 011123344444332110 0000011122333 689
Q ss_pred HHHHHHHHHHHHHHc------CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh-hccCCCCCChH
Q 005823 385 VGGIAKSLAKGLADK------GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKE 457 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~------Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~-~Ll~~~~lp~~ 457 (675)
+++|++.|++.+.++ +.+|++|++|++|..++++|+ |++.+|+++.||+||+|+++..+-. .+.-.+.||..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~ 301 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW 301 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHH
Confidence 999999999987543 357999999999999887765 8899999999999999998765422 13334579988
Q ss_pred HHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEeccc-c
Q 005823 458 EENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-I 536 (675)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~-~ 536 (675)
+++++..+.++ ...++++.+++++|+.+.....+.+.+. +..+..++.. .+. .+++..++.++...+ .
T Consensus 302 k~~ai~~l~~g-~~~Kv~l~f~~~FW~~~~~~~~~~~~~~----~~~~~~~~~~----~~~--~~~~~~~l~~~~~g~~a 370 (487)
T PLN02676 302 KIEAIYQFDMA-VYTKIFLKFPYKFWPSGPGTEFFLYAHE----RRGYYPFWQH----LEN--EYPGSNVLFVTVTDEES 370 (487)
T ss_pred HHHHHHhCCce-eeEEEEEEeCCCCCCCCCCceeeeeecc----ccccchhhhh----ccc--CCCCCCEEEEEechHHH
Confidence 87777777665 4789999999998876422111112110 0111111111 111 123444555554432 1
Q ss_pred hhhccCChhhHHHHHHHHHHHHHHHHHHhhCCC-Cc---CceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCC
Q 005823 537 EDWEGLAQKDYDAKKELVADEIINRLENKLFPG-LK---QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPF 612 (675)
Q Consensus 537 ~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~-l~---~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~ 612 (675)
..|.. ..+++..+.+++.|. ++++. .. +.+...|...|. ..|+|...+.+..... .+.
T Consensus 371 ~~~~~-------~s~e~~~~~vl~~L~-~~~g~~~~~p~~~~~~~W~~dp~--------s~Gsys~~~pG~~~~~--~~~ 432 (487)
T PLN02676 371 RRIEQ-------QPDSETKAEIMEVLR-KMFGPNIPEATDILVPRWWSNRF--------FKGSYSNWPIGVSRYE--FDQ 432 (487)
T ss_pred HHHHh-------CCHHHHHHHHHHHHH-HHhCCCCCCcceEEecccCCCCC--------CCcccCCCCCCCChhH--HHH
Confidence 22322 234678888999998 77752 22 222222222222 2577765543322111 123
Q ss_pred CCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCCcc
Q 005823 613 NTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 613 ~~t~i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
.+.|+++|||||+.|... +.|+||+.||++||++|++.+...+
T Consensus 433 L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~~ 477 (487)
T PLN02676 433 IRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKK 477 (487)
T ss_pred HhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhccCc
Confidence 346789999999988653 4799999999999999999887544
No 19
>PLN02529 lysine-specific histone demethylase 1
Probab=99.96 E-value=5.4e-26 Score=257.77 Aligned_cols=418 Identities=16% Similarity=0.175 Sum_probs=240.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeC--C--eEEccccccccCCCCCCchHHHHHHHH
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD--G--YTFDVGSSVMFGFSDKGNLNLITQALA 230 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~--g--~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (675)
...+||+|||||++||+||..|+++|++|+|+|+.+++||++.|.... | +.+|.|++++++... +.+..+.+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~----npl~~la~ 233 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHA----NPLGVLAR 233 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccccc----chHHHHHH
Confidence 346799999999999999999999999999999999999999988764 3 489999999998532 23667888
Q ss_pred HcCCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhh
Q 005823 231 AVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQ 310 (675)
Q Consensus 231 ~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (675)
++|+++.... ....++..+|..+....+. .+. ..+..+++...+.......
T Consensus 234 ~lgl~~~~~~--~~~~~~~~~G~~v~~~~~~-----~~~-------~~~~~~l~~~~~l~~~~~~--------------- 284 (738)
T PLN02529 234 QLSIPLHKVR--DNCPLYKPDGALVDKEIDS-----NIE-------FIFNKLLDKVTELRQIMGG--------------- 284 (738)
T ss_pred HhCCCccccC--CCceEEeCCCcCcchhhhh-----hHH-------HHHHHHHHHHHHHHHhccc---------------
Confidence 8898765332 2334455666544221110 000 0011111111111000000
Q ss_pred hhcChhhhhHHhhhccccHHHHHHHhC------CCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHH---hhcCccccc
Q 005823 311 FFKRPLECLTLAYYLPQNAGNIARKYI------KDPQLLSFIDAECFIVSTINALQTPMINASMVLCD---RHFGGINYP 381 (675)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~g~~~p 381 (675)
.....++.+++++.. .++.-+.+++..........+...+.+.......+ ...+....+
T Consensus 285 ------------~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i 352 (738)
T PLN02529 285 ------------FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFL 352 (738)
T ss_pred ------------CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEE
Confidence 011223333333221 12222333332221111112222222221111100 112345668
Q ss_pred CCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh-hccCCCCCChHHHH
Q 005823 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEEN 460 (675)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~-~Ll~~~~lp~~~~~ 460 (675)
.||+++|+++|++.+ .|++|++|++|..++++|+ |+. +++++.||+||+|+++..+.. .+.-.+.+|+.+.+
T Consensus 353 ~GG~~~Li~aLA~~L-----~IrLnt~V~~I~~~~dGVt-V~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~ 425 (738)
T PLN02529 353 AGGNWRLINALCEGV-----PIFYGKTVDTIKYGNDGVE-VIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLA 425 (738)
T ss_pred CCcHHHHHHHHHhcC-----CEEcCCceeEEEEcCCeEE-EEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHH
Confidence 899999999988754 6999999999999887764 654 455799999999999876532 22224468988888
Q ss_pred HHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccc-hhh
Q 005823 461 FQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSI-EDW 539 (675)
Q Consensus 461 ~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~-~~w 539 (675)
++.++.+++ ..+|++.|++++|+.+......+.... ...+.+++... ... +.|..++.+++.... ..+
T Consensus 426 AI~rL~yG~-v~KV~L~F~~~FW~~~~~~fG~l~~~~-----~~~g~~~~~~~----~~~-~~ggpvLvafv~G~~A~~l 494 (738)
T PLN02529 426 AIDRLGFGL-LNKVAMVFPSVFWGEELDTFGCLNESS-----NKRGEFFLFYG----YHT-VSGGPALVALVAGEAAQRF 494 (738)
T ss_pred HHHcCCCce-eEEEEEEeCCccccCCCCceEEEeccC-----CCCceEEEEec----CCC-CCCCCEEEEEECchhhHHH
Confidence 888887765 789999999998865432212221110 01111222111 111 223456666655432 223
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHhhCCC--C-----cCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCC
Q 005823 540 EGLAQKDYDAKKELVADEIINRLENKLFPG--L-----KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPF 612 (675)
Q Consensus 540 ~~~~~~~~~~~ke~~~~~il~~L~~~~~P~--l-----~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~ 612 (675)
.. ..++++.+.+++.|. ++++. . ...+...|...|.+ .|+|...+.+..... ...
T Consensus 495 e~-------lsdeeii~~vl~~L~-~ifgp~~~~vp~Pi~~v~t~W~~DP~s--------~GsYS~~~~g~~~~d--~~~ 556 (738)
T PLN02529 495 EN-------TDPSTLLHRVLSVLR-GIYNPKGINVPDPIQTICTRWGSDPLS--------YGSYSHVRVQSSGSD--YDI 556 (738)
T ss_pred hc-------CCHHHHHHHHHHHHH-HHhCccccccCCceEEEEccCCcCCCC--------CCCcccCCCCCchhH--HHH
Confidence 22 234688899999998 77642 1 12233333333332 566665432111100 001
Q ss_pred CCCC-CCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCC
Q 005823 613 NTTG-INGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 613 ~~t~-i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
...+ .++|||||++|.++ +.|+||+.||.+||++|++.+..
T Consensus 557 La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 557 LAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred HhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 1233 47999999998664 37999999999999999988754
No 20
>PLN02568 polyamine oxidase
Probab=99.95 E-value=2.3e-26 Score=256.23 Aligned_cols=447 Identities=13% Similarity=0.099 Sum_probs=238.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-----CeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHH
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKG-----ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g-----~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (675)
+.+||+|||||++||+||.+|++.| ++|+|||+..++||+++|....|+.+|.|+++++|... +.+.++++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~----~~~~~l~~ 79 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGG----SPVYKIAQ 79 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCC----CHHHHHHH
Confidence 3579999999999999999999887 89999999999999999999999999999999998642 35778889
Q ss_pred HcCCceeEeeCC------CeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH---hhhhhhhcc
Q 005823 231 AVGCEMEVIPDP------TTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNA---LNSLELKSL 301 (675)
Q Consensus 231 ~lGl~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 301 (675)
++|+.....+.. ....+...+|..+. . ...+.+.. .+..+++........ .....+..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~~~ 147 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVD--P---SIVESIST-------LFRGLMDDAQGKLIEPSEVDEVDFVKL 147 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCCC--H---HHHHHHHH-------HHHHHHHHhhccccccccccccccccc
Confidence 999853221100 01112223332211 0 11111110 001111110000000 000000000
Q ss_pred chhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhC-----------------CCH--H-HHHHHhhhhhhhc-cCCCCC
Q 005823 302 EEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYI-----------------KDP--Q-LLSFIDAECFIVS-TINALQ 360 (675)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----------------~~~--~-l~~~~~~~~~~~~-~~~~~~ 360 (675)
... ..+..... ...++++++++.+ .++ . .+..+.....+.. ......
T Consensus 148 ~~~---~~~~~~~~---------~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 215 (539)
T PLN02568 148 AAK---AARVCESG---------GGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADD 215 (539)
T ss_pred chh---ccchhccC---------CCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhcccccccc
Confidence 000 00000000 0011222221110 000 0 0111111110000 011111
Q ss_pred chHHHHHHHH-HHhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECC
Q 005823 361 TPMINASMVL-CDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNA 439 (675)
Q Consensus 361 ~p~~~~~~~~-~~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~ 439 (675)
.+.......- .....+....+.||++.|+++|++.+. +.+|+++++|++|..+++.++ |++.+|+++.||+||+|+
T Consensus 216 ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~-V~~~dG~~~~aD~VIvTv 292 (539)
T PLN02568 216 LSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVK-LHFADGSTMTADHVIVTV 292 (539)
T ss_pred HhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEE-EEEcCCCEEEcCEEEEcC
Confidence 1111000000 000123456789999999999999884 457999999999999887764 888899889999999999
Q ss_pred ChhhHHhh-----ccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCC-----ccceeeccchhhhccCCCceE
Q 005823 440 TRWDTFGK-----LLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTD-----CHHFVLEDDWNRLEEPYGSIF 509 (675)
Q Consensus 440 g~~~~~~~-----Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~-----~~~~~~~~~~~~~~~~~~~i~ 509 (675)
++..+... +.-.+.||..+.+++..+.++. ..+|++.+++++|+.+.. .-.+++.++-..........+
T Consensus 293 Pl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~-~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (539)
T PLN02568 293 SLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGV-VNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWW 371 (539)
T ss_pred CHHHHhhccccccceecCCCCHHHHHHHHhcCCce-eeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccch
Confidence 98765432 2233579998888888777654 779999999998764211 111111110000000000011
Q ss_pred EecCCCCCCCCCCCCceEEEEEeccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCC------------------
Q 005823 510 LSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGL------------------ 570 (675)
Q Consensus 510 ~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l------------------ 570 (675)
+.......+ ...+..++..++... +..|..+ .++++.+.+++.|. ++++.-
T Consensus 372 ~~~~~~~~~--~~~~~~vL~~~~~G~~A~~~e~l-------~~~~~~~~~~~~L~-~~~g~~~~~~~~~~~~~~~~~~~~ 441 (539)
T PLN02568 372 MRRTASICP--IHKNSSVLLSWFAGKEALELEKL-------SDEEIIRGVQTTLS-SFLKRRVAGLGSQSHPLCNGGASS 441 (539)
T ss_pred hhccccccc--cCCCCCEEEEEeccHHHHHHHcC-------CHHHHHHHHHHHHH-HHcCCcccCccccccccccccccc
Confidence 110000011 112555666666543 2233332 34688889999998 777521
Q ss_pred --------cCceEEEEecChhHHHHHhcCCCCcccCCCCCCCC---CCCCCCCC--------CCCCCcEEEeCCCccCC-
Q 005823 571 --------KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPK---GLLGMPFN--------TTGINGLYCVGDSCFPG- 630 (675)
Q Consensus 571 --------~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~---~~~~~p~~--------~t~i~gLylaG~~~~pG- 630 (675)
...++..|...|.+ .|+|...+.+... ..+..|.. ..+.++|||||..|+..
T Consensus 442 ~~~~~~~p~~~~~t~W~~dp~~--------~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~ 513 (539)
T PLN02568 442 NDGSRWKFVKVLKSKWGTDPLF--------LGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTH 513 (539)
T ss_pred ccccCCCCceEEeCCCCCCCcc--------CCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCc
Confidence 12222233333332 6777755332211 11222321 12334799999998664
Q ss_pred -CChhHHhhhHHHHHHHHHHHhC
Q 005823 631 -QGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 631 -~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
++|.||+.||+++|++|++.+.
T Consensus 514 ~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 514 YSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc
Confidence 3699999999999999998765
No 21
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.95 E-value=1.4e-25 Score=246.16 Aligned_cols=402 Identities=19% Similarity=0.209 Sum_probs=238.4
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeE--EccccccccCCCCCCchHHHHHHHHHcCCceeEeeCCCeEEEE
Q 005823 171 VAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT--FDVGSSVMFGFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFH 248 (675)
Q Consensus 171 ~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~--~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~~~~~~~~~~~~ 248 (675)
+||++|+++|++|+|||+.+++||++.|+..+|+. +|.|+|++++.. ..+.++++++|++...........+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~-----~~~~~l~~~lgl~~~~~~~~~~~~~~ 75 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAY-----TNLLALLRRIGAEPRLQGPRLPLPFY 75 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEccc-----HHHHHHHHHhCCchhhhcccCCccee
Confidence 58999999999999999999999999999988654 999999998532 34778999999875433111122233
Q ss_pred cCCCeEEEEcC----CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhhhhHHhhh
Q 005823 249 LPNDLSVRVHR----EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYY 324 (675)
Q Consensus 249 ~~~g~~~~~~~----~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (675)
.+++....+.. .+......+.....-......++........ .. ....+
T Consensus 76 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------------------~~-----~~~~~ 128 (419)
T TIGR03467 76 DPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR----------------------RT-----RFRAL 128 (419)
T ss_pred cCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----------------------hc-----Ccccc
Confidence 33333211110 0111111111111111111111111000000 00 00123
Q ss_pred ccccHHHHHHHhCCCHHHH-HHHhhhhhhhccCCCCCchHHHHHHHHHHhh-----cCcccccCCCHHHHH-HHHHHHHH
Q 005823 325 LPQNAGNIARKYIKDPQLL-SFIDAECFIVSTINALQTPMINASMVLCDRH-----FGGINYPVGGVGGIA-KSLAKGLA 397 (675)
Q Consensus 325 ~~~s~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----~~g~~~p~gG~~~l~-~~L~~~l~ 397 (675)
...++.+++++++.++.+. .+++..+....+.++.++++......+.... ..+.++|+||++++. ++|++.++
T Consensus 129 ~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~ 208 (419)
T TIGR03467 129 DDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD 208 (419)
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence 4678899999887555444 4666655555556777777665443332111 124788999987766 55999999
Q ss_pred HcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEe
Q 005823 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMG 477 (675)
Q Consensus 398 ~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~ 477 (675)
+.|++|++|++|++|..++++++.+...+|+++.||.||+|+++..+ ..+++.+ ...+.+..+.+.+ +.++++.
T Consensus 209 ~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~-~~ll~~~----~~~~~l~~~~~~~-~~~v~l~ 282 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHA-ASLLPGE----DLGALLTALGYSP-ITTVHLR 282 (419)
T ss_pred HcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHH-HHhCCCc----hHHHHHhhcCCcc-eEEEEEE
Confidence 99999999999999999888765333357778999999999998775 5676541 2334555666654 6799999
Q ss_pred eccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHHHHH
Q 005823 478 VKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADE 557 (675)
Q Consensus 478 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~ 557 (675)
+++++|.+. ....+ .. .+...++ . .+ ...+ ....+.+++.. ...+. +..++++.+.
T Consensus 283 ~~~~~~~~~-~~~~~-~~-------~~~~~~~-~-~~----~~~~-~~~~~~~~~~~-~~~~~-------~~~~e~~~~~ 338 (419)
T TIGR03467 283 LDRAVRLPA-PMVGL-VG-------GLAQWLF-D-RG----QLAG-EPGYLAVVISA-ARDLV-------DLPREELADR 338 (419)
T ss_pred eCCCcCCCC-Ceeee-cC-------CceeEEE-E-CC----cCCC-CCCEEEEEEec-chhhc-------cCCHHHHHHH
Confidence 998875332 11111 11 1111111 1 11 1111 11233333332 12222 2346899999
Q ss_pred HHHHHHHhhCCCCcC-ceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCC--CChh
Q 005823 558 IINRLENKLFPGLKQ-SIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPG--QGVI 634 (675)
Q Consensus 558 il~~L~~~~~P~l~~-~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG--~Gv~ 634 (675)
++++|+ +++|.... .++...+ .....+.|...|... ..+|...++++|||||||++++| ..|+
T Consensus 339 ~l~~l~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~----~~~~~~~~~~~~l~~aGd~~~~~~~~~~e 404 (419)
T TIGR03467 339 IVAELR-RAFPRVAGAKPLWARV---------IKEKRATFAATPGLN----RLRPGARTPWPNLFLAGDWTATGWPATME 404 (419)
T ss_pred HHHHHH-HhcCccccCCccceEE---------EEccCCccccCCccc----ccCCCCCCCcCCEEEecccccCCCcchHH
Confidence 999999 88886532 2222111 111233444333211 12455567889999999999875 3689
Q ss_pred HHhhhHHHHHHHHH
Q 005823 635 AVAFSGVMCAHRVA 648 (675)
Q Consensus 635 gA~~SG~~aA~~Il 648 (675)
||+.||++||+.|+
T Consensus 405 gA~~SG~~aA~~i~ 418 (419)
T TIGR03467 405 GAVRSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.95 E-value=1.4e-25 Score=255.36 Aligned_cols=419 Identities=19% Similarity=0.231 Sum_probs=239.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCe----EEccccccccCCCCCCchHHHHHHHH
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGY----TFDVGSSVMFGFSDKGNLNLITQALA 230 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~----~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (675)
....+|+|||||++||+||++|++.|++|+|+|+.+++||++.+....|. .+|.|++++++... +.+..+++
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~----npl~~l~~ 311 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGING----NPLGVLAR 311 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCc----cHHHHHHH
Confidence 34689999999999999999999999999999999999999999887653 68999999997632 34577888
Q ss_pred HcCCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhh
Q 005823 231 AVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQ 310 (675)
Q Consensus 231 ~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (675)
++|+++..+. ....+++++|..+... ...... ..+..+++...+....+.. ....
T Consensus 312 ~lgl~~~~~~--~~~~~~~~dG~~~~~~--~~~~v~----------~~f~~lL~~~~klr~~~~~-~~~~---------- 366 (808)
T PLN02328 312 QLGLPLHKVR--DICPLYLPDGKAVDAE--IDSKIE----------ASFNKLLDRVCKLRQAMIE-EVKS---------- 366 (808)
T ss_pred HcCCceEecC--CCceEEeCCCcCcchh--hhhhHH----------HHHHHHHHHHHHHHHhhhh-cccc----------
Confidence 9998765443 2234455666544211 110000 0011111111111000000 0000
Q ss_pred hhcChhhhhHHhhhccccHHHHHHH------hCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHH-----hhcCccc
Q 005823 311 FFKRPLECLTLAYYLPQNAGNIARK------YIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCD-----RHFGGIN 379 (675)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~g~~ 379 (675)
...++.+++++ +..++.-+.+++......-.......... .+.... ...+..+
T Consensus 367 --------------~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~L--Sl~~w~qd~~~e~~G~~~ 430 (808)
T PLN02328 367 --------------VDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNL--SMAYWDQDDPYEMGGDHC 430 (808)
T ss_pred --------------cCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHH--HhhhhhccccccCCCeEE
Confidence 01122222221 11122222222211100000000001000 000000 0113356
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh-hccCCCCCChHH
Q 005823 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEE 458 (675)
Q Consensus 380 ~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~-~Ll~~~~lp~~~ 458 (675)
.+.||++.|+++|++.+ .|++|++|++|...++++. | +.+|+++.||+||+|+++..+.. .+.-.+.+|..+
T Consensus 431 ~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV~-V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K 503 (808)
T PLN02328 431 FIPGGNDTFVRELAKDL-----PIFYERTVESIRYGVDGVI-V-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRK 503 (808)
T ss_pred EECCcHHHHHHHHHhhC-----CcccCCeeEEEEEcCCeEE-E-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHH
Confidence 67899999999999877 4999999999999877664 5 45788899999999999876532 122234699988
Q ss_pred HHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccc-h
Q 005823 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSI-E 537 (675)
Q Consensus 459 ~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~-~ 537 (675)
..++.++.++. ..+|++.+++++|......-..+..+ . ...+.+++. .+. . .+.|..++..++.... .
T Consensus 504 ~~AI~~l~yG~-~~KV~L~F~~~FW~~~~d~fG~l~~d-~----s~rG~~~lf-~s~-s---~~~G~~vLvafv~G~~A~ 572 (808)
T PLN02328 504 KDAIQRLGYGL-LNKVALLFPYNFWGGEIDTFGHLTED-P----SMRGEFFLF-YSY-S---SVSGGPLLIALVAGDAAV 572 (808)
T ss_pred HHHHHcCCCcc-eEEEEEEeCCccccCCCCceEEEeec-C----CCCceEEEE-ecC-C---CCCCCcEEEEEecChhhH
Confidence 88888887765 67999999999876543221122111 0 011112211 111 1 1235556666654432 2
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHHHhhCCC-------CcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCC
Q 005823 538 DWEGLAQKDYDAKKELVADEIINRLENKLFPG-------LKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGM 610 (675)
Q Consensus 538 ~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~-------l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~ 610 (675)
.+.. ..++++++.+++.|. ++++. ....++..|...|.+ .|+|...+.+..... .
T Consensus 573 ~~e~-------lsdeE~v~~vL~~Lr-~ifgp~~~~vp~P~~~~vtrW~~DP~s--------~GSYS~~~pG~~~~~--~ 634 (808)
T PLN02328 573 KFET-------LSPVESVKRVLQILR-GIFHPKGIVVPDPVQAVCTRWGKDCFT--------YGSYSYVAVGSSGDD--Y 634 (808)
T ss_pred HHhc-------CCHHHHHHHHHHHHH-HHhCcccccccCcceEEEecCCCCCCc--------CCCCCCCCCCCchhH--H
Confidence 2222 235678889999998 66642 223334344434433 566654432211000 1
Q ss_pred CCCCCCC--CcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCCc
Q 005823 611 PFNTTGI--NGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGLE 654 (675)
Q Consensus 611 p~~~t~i--~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~~ 654 (675)
+....++ ++|||||+.|... +.|+||+.||.+||++|++.+...
T Consensus 635 ~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 635 DILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred HHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence 1112333 5899999998643 379999999999999999977543
No 23
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.95 E-value=3.6e-26 Score=250.99 Aligned_cols=229 Identities=25% Similarity=0.383 Sum_probs=142.4
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh-hccCCCCCChHHHHHHHhhcc
Q 005823 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKLYVK 467 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~ 467 (675)
...+...+...|++|++|++|++|..++++++ |.+.+|+++.||+||+|+++..+.. .+.+ .+|.....++..+.+
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~~~~a~~~~~~ 288 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIEREDGGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPEDKRRAIENLPY 288 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEEESSEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHHHHHHHHTEEE
T ss_pred hHHHHHHHhhcCceeecCCcceeccccccccc-cccccceEEecceeeecCchhhhhhhhhcc--ccccccccccccccc
Confidence 33344444555789999999999999998886 8899999999999999999877654 3333 577766666666555
Q ss_pred CCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccc-hhhccCChhh
Q 005823 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSI-EDWEGLAQKD 546 (675)
Q Consensus 468 ~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~-~~w~~~~~~~ 546 (675)
.+ ..+|++.++.++|+++.....++..+. .....++..++..++. ++..++..++..+. ..|.+
T Consensus 289 ~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~----- 353 (450)
T PF01593_consen 289 SS-VSKVFLGFDRPFWPPDIDFFGILYSDG------FSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDD----- 353 (450)
T ss_dssp EE-EEEEEEEESSGGGGSTTTESEEEEESS------TSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTT-----
T ss_pred Cc-ceeEEEeeecccccccccccceecccC------ccccccccccccCccc---ccCCcceeeeeccccchhcc-----
Confidence 43 569999999999877532233333322 1111233334433322 35555555554432 23333
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC--CcCce---EEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCC-CcE
Q 005823 547 YDAKKELVADEIINRLENKLFPG--LKQSI---AFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGI-NGL 620 (675)
Q Consensus 547 ~~~~ke~~~~~il~~L~~~~~P~--l~~~i---~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i-~gL 620 (675)
..++++.+.++++|+ +++|. ..+.. ...|...| + ..++|+..+.+.. ...++..++++ +||
T Consensus 354 --~~~e~~~~~~~~~L~-~~~~~~~~~~~~~~~~~~w~~~~-----~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 420 (450)
T PF01593_consen 354 --LSDEEILERVLDDLR-KILPGASIPDPIDITVTRWSRDP-----Y---PRGSYSYFPPGQS--SQFRPALRTPIDPGL 420 (450)
T ss_dssp --SCHHHHHHHHHHHHH-HHHTTGGGGEESEEEEEECTTST-----T---TSSSCECHCTTHH--HHHHHHHHSCBTTTE
T ss_pred --cchhhhHHHHHHHhh-hcccccccccccccccccccccc-----c---ccccccccccccc--ccccccccCCcceEE
Confidence 345788999999998 88884 22211 11111111 1 2344443322211 00133445677 699
Q ss_pred EEeCCCccCC--CChhHHhhhHHHHHHHHH
Q 005823 621 YCVGDSCFPG--QGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 621 ylaG~~~~pG--~Gv~gA~~SG~~aA~~Il 648 (675)
||||++++++ +|++||+.||++||++|+
T Consensus 421 ~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 421 YFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp EE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9999999987 699999999999999986
No 24
>PLN03000 amine oxidase
Probab=99.95 E-value=6.8e-25 Score=249.22 Aligned_cols=422 Identities=17% Similarity=0.214 Sum_probs=239.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeC----CeEEccccccccCCCCCCchHHHHHHHHH
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD----GYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~----g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (675)
...||+|||||++||+||..|++.|++|+|+|+.+++||++.|.... |+.+|.|++++++.. .+.+..++++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~----~npl~~L~~q 258 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTL----GNPLGIIARQ 258 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCC----ccHHHHHHHH
Confidence 46899999999999999999999999999999999999999998864 578999999999753 2356677889
Q ss_pred cCCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005823 232 VGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 232 lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
+|+.+....+ ...++..+|..+. .+.. ..+. ..+..+++...+........ ....++. ..
T Consensus 259 lgl~l~~~~~--~~~ly~~~Gk~v~--~~~~---~~ve-------~~fn~lLd~~~~lr~l~~~~---~~D~SLg---~a 318 (881)
T PLN03000 259 LGSSLYKVRD--KCPLYRVDGKPVD--PDVD---LKVE-------VAFNQLLDKASKLRQLMGDV---SMDVSLG---AA 318 (881)
T ss_pred cCCceeecCC--CCeEEEeCCcCCc--hhhh---hhHH-------HHHHHHHHHHHHHHHHhccc---CcCCcHH---HH
Confidence 9987553322 2223344554431 1111 0000 01112222211111110000 0000000 00
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHH-H--hhcCcccccCCCHHHH
Q 005823 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLC-D--RHFGGINYPVGGVGGI 388 (675)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~--~~~~g~~~p~gG~~~l 388 (675)
+ + .+.++...-+.+.. +.++.......-.........+....... . ...+..+...||++.|
T Consensus 319 L----e----------~~~~~~g~~~t~e~-~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 319 L----E----------TFRQVSGNDVATEE-MGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred H----H----------HHHHHHcccCCHHH-HHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHH
Confidence 0 0 00000000011111 11111110000001111111111111100 0 0123355678999999
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh-hccCCCCCChHHHHHHHhhcc
Q 005823 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG-KLLKGEQLPKEEENFQKLYVK 467 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~ 467 (675)
+++|++.+ .|+++++|++|.++++.+. |++.+ +++.||+||+|+++..+-. .+.-.+.||+++.+++.++.+
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~-V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~ 456 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYGSNGVK-VIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGF 456 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEECCCeEE-EEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCC
Confidence 99999877 4999999999999887765 66543 5799999999998765431 222245799998888888877
Q ss_pred CCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCC-CCceEEEEEecccc-hhhccCChh
Q 005823 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAP-EGHHILHIFTICSI-EDWEGLAQK 545 (675)
Q Consensus 468 ~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap-~G~~~l~~~~~~~~-~~w~~~~~~ 545 (675)
+. ..+|++.|++++|+.+......+..+. ...+.+++. .+ ..| .|..++..++..+. ..|..+
T Consensus 457 G~-l~KViL~Fd~~FW~~d~~~FG~l~~~~-----~~rg~~~~f-~s-----~sp~~G~pVLvafv~Gd~A~~le~l--- 521 (881)
T PLN03000 457 GL-LNKVAMLFPYVFWSTDLDTFGHLTEDP-----NYRGEFFLF-YS-----YAPVAGGPLLIALVAGEAAHKFETM--- 521 (881)
T ss_pred cc-eEEEEEEeCCccccCCCCceeEEecCC-----CCCceeEEE-eC-----CCCCCCCcEEEEEecCchhHHhhcC---
Confidence 65 789999999999876543322232211 001112221 11 222 45566666665532 233333
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCC--C-----cCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCC-
Q 005823 546 DYDAKKELVADEIINRLENKLFPG--L-----KQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGI- 617 (675)
Q Consensus 546 ~~~~~ke~~~~~il~~L~~~~~P~--l-----~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i- 617 (675)
.++++.+.+++.|. ++++. . ...++..|...|.+ .|+|...+.+..... ....+.|+
T Consensus 522 ----SdeE~ve~vl~~Lr-kifg~~~~~vp~Pv~~ivtrW~~DPys--------rGSYS~~~pG~~~~~--~d~LaePv~ 586 (881)
T PLN03000 522 ----PPTDAVTRVLHILR-GIYEPQGINVPDPLQTVCTRWGGDPFS--------LGSYSNVAVGASGDD--YDILAESVG 586 (881)
T ss_pred ----CHHHHHHHHHHHHH-HHhCccccccCCceEEEEccCCCCCCC--------CccccCCCCCCchHH--HHHHhCcCC
Confidence 35788899999998 77742 1 12233333333332 677765543221110 11123444
Q ss_pred -CcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCC
Q 005823 618 -NGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 618 -~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
++|||||+.|... +.|+||+.||++||++|++.+..
T Consensus 587 ~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred CCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999887542 47999999999999999988764
No 25
>PLN02976 amine oxidase
Probab=99.94 E-value=1.7e-23 Score=242.74 Aligned_cols=455 Identities=16% Similarity=0.133 Sum_probs=244.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee-CCeEEccccccccCCCCCC----chHHHHHH
Q 005823 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKG----NLNLITQA 228 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~----~~~~~~~l 228 (675)
....+||+|||+|++|+++|++|++.|++|+|||+.+.+||++.+... .|+.+|.|+++++|..... .++.+..+
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~l 769 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLI 769 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHH
Confidence 345689999999999999999999999999999999999999988764 5889999999998753211 22445557
Q ss_pred HHHcCCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhh-hhhhhccchhhH-
Q 005823 229 LAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALN-SLELKSLEEPIY- 306 (675)
Q Consensus 229 l~~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~- 306 (675)
++.+|+.+........ .+...+|..+. .+ ..+.+.. .+..+++.......... .....++.+.+.
T Consensus 770 a~qlGl~l~~~~~~~~-~yd~~~G~~V~--~e---~~~~v~~-------~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~ 836 (1713)
T PLN02976 770 CAQLGLELTVLNSDCP-LYDVVTGEKVP--AD---LDEALEA-------EYNSLLDDMVLLVAQKGEHAMKMSLEDGLEY 836 (1713)
T ss_pred HHhcCCccccccCCCc-eeEccCCcCCC--HH---HHHHHHH-------HHHHHHHHHHHHHhhcccCccCCCHHHHHHH
Confidence 7888887644332211 13334443321 11 1111111 11111111110000000 000000000000
Q ss_pred HHhhhhcC-h---------------hhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhh---ccCCCCCchHHHHH
Q 005823 307 LFGQFFKR-P---------------LECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIV---STINALQTPMINAS 367 (675)
Q Consensus 307 ~~~~~~~~-~---------------~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~p~~~~~ 367 (675)
.+...... . ....................-+.++..+.+++...... .+..+.+.++.+..
T Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~ 916 (1713)
T PLN02976 837 ALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWN 916 (1713)
T ss_pred HHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhh
Confidence 00000000 0 00000000000000011111111122222222211111 01122222222111
Q ss_pred HH-HHHhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEe----------CCeEEEEEeCCCCEEEcCEEE
Q 005823 368 MV-LCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE----------QGKAVGVRLSDGREFYAKTII 436 (675)
Q Consensus 368 ~~-~~~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~----------~~~v~gV~~~~G~~i~ad~VI 436 (675)
.- ......+..+.+.||++.|+++|++.+ .|++|++|++|.+. +++| .|.+.+|+++.||+||
T Consensus 917 qd~~y~~fgG~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVI 990 (1713)
T PLN02976 917 QDDVYGGFGGAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVL 990 (1713)
T ss_pred cccccccCCCceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEE
Confidence 00 000112234568999999999999876 49999999999984 2344 4788999899999999
Q ss_pred ECCChhhHHh-hccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCC
Q 005823 437 SNATRWDTFG-KLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTV 515 (675)
Q Consensus 437 ~A~g~~~~~~-~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 515 (675)
+|+++..+-. .+.-.++||..+..++..+.++. ..+|++.|++++|+.+....... +... ...+.++..++
T Consensus 991 VTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~-lnKV~LeFdrpFW~~d~d~FG~s----~edt-dlrG~~~~~wn-- 1062 (1713)
T PLN02976 991 ITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGV-LNKVVLEFPEVFWDDSVDYFGAT----AEET-DLRGQCFMFWN-- 1062 (1713)
T ss_pred EeCCHHHhhhcccccCCcccHHHHHHHHhhcccc-ceEEEEEeCCccccCCCCccccc----cccC-CCCceEEEecc--
Confidence 9999765432 23334579998888888877764 77999999999887643211111 1100 01112232221
Q ss_pred CCCCCCCCCceEEEEEecccc-hhhccCChhhHHHHHHHHHHHHHHHHHHhhCCC-----CcCceEEEEecChhHHHHHh
Q 005823 516 LDSSLAPEGHHILHIFTICSI-EDWEGLAQKDYDAKKELVADEIINRLENKLFPG-----LKQSIAFREIGSPKTHRRYL 589 (675)
Q Consensus 516 ~d~~~ap~G~~~l~~~~~~~~-~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~-----l~~~i~~~~v~tP~~~~~~~ 589 (675)
...+.|..+|..++.... ..|.. ...+++.+.+++.|. ++|++ ....++..|...|.+
T Consensus 1063 ---lr~psG~pVLVafv~G~aAreiEs-------LSDEE~Ve~ALe~Lr-KlFG~~~iPdPv~~vvTrWssDPyS----- 1126 (1713)
T PLN02976 1063 ---VKKTVGAPVLIALVVGKAAIDGQS-------MSSSDHVNHALMVLR-KLFGEALVPDPVASVVTDWGRDPFS----- 1126 (1713)
T ss_pred ---CCCCCCCCEEEEEeccHhHHHHhh-------CCHHHHHHHHHHHHH-HHcCcccccCcceeEEecCCCCCCc-----
Confidence 122346566666655432 22322 235678889999998 88863 222333334434432
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCCCCc-EEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCCccc
Q 005823 590 ARDQGTYGPMPRGTPKGLLGMPFNTTGING-LYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGLEKK 656 (675)
Q Consensus 590 ~~~~G~yg~~p~~~~~~~~~~p~~~t~i~g-LylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~~~~ 656 (675)
.|+|...+.+..... +.....|+.| |||||..|.+. +.|.||+.||++||++|+..+..+..
T Consensus 1127 ---rGSYSy~~PGs~~~d--~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1127 ---YGAYSYVAIGASGED--YDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred ---CccccCCCCCCCchH--HHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 677765433221111 1112355666 99999987553 47999999999999999999865443
No 26
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=5.2e-24 Score=221.92 Aligned_cols=421 Identities=18% Similarity=0.133 Sum_probs=237.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
....||||||+|.+||++|+.|.+.||+|+|+|..+++|||+.+.+..|...|.|.+++.. ..+.+..+.++.|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-----~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-----THDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-----cchhhhhhHHhcCC
Confidence 4568999999999999999999999999999999999999999988888888999777753 34566778888998
Q ss_pred ceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 005823 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (675)
..+...........+..... ..+..+.+.. .+.......+.......+.+. ....+
T Consensus 80 ~~~~fi~~g~~~~~~~~~~~----~~p~~~~~~~-----~d~~~~~~~~~~~a~~~~~~~-----~~~t~---------- 135 (450)
T COG1231 80 PLEPFIRDGDNVIGYVGSSK----STPKRSLTAA-----ADVRGLVAELEAKARSAGELD-----PGLTP---------- 135 (450)
T ss_pred CCCceeccCccccccccccc----ccchhccchh-----hhhcchhhhhhhhhhcccccC-----cccCc----------
Confidence 76543321111111100000 0000000000 000000000000000000000 00000
Q ss_pred hhhhhHHhhhccccHHHH----HHHhCCCHHHHHHHhhhhhhhccCCCCCchHH---HHHHHHHH-------hhcCcccc
Q 005823 315 PLECLTLAYYLPQNAGNI----ARKYIKDPQLLSFIDAECFIVSTINALQTPMI---NASMVLCD-------RHFGGINY 380 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~-------~~~~g~~~ 380 (675)
...+.+.++..+| .+.+-.++..+ .. .+...+.+.... ........ ........
T Consensus 136 -----~~~e~~~~~~~~W~~~~~~~~~~~~~a~------~~-~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~ 203 (450)
T COG1231 136 -----EDRELDLESLAAWKTSSLRGLSRDPGAR------VS-PGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQ 203 (450)
T ss_pred -----chhhhhhHHHHhhhhccccccccCccce------ec-cCCCCcccccchhhhhhhhhhhhccccccccccchhhc
Confidence 0000111111222 01110111000 00 000111111100 00000000 01122345
Q ss_pred cCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHH
Q 005823 381 PVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEEN 460 (675)
Q Consensus 381 p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~ 460 (675)
+.|||+.|++++++.+ |-.|+++++|.+|..++++|+ |++.+..++.+|.||+|+++..+ ..+--.+.+|...++
T Consensus 204 ~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~~gV~-Vt~~~~~~~~ad~~i~tiPl~~l-~qI~f~P~l~~~~~~ 278 (450)
T COG1231 204 RLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDGDGVT-VTADDVGQYVADYVLVTIPLAIL-GQIDFAPLLPAEYKQ 278 (450)
T ss_pred cCccHHHHHHHHHHHh---hceEEecCceeeEEEcCCeEE-EEeCCcceEEecEEEEecCHHHH-hhcccCCCCCHHHHH
Confidence 5699999999999888 568999999999999988876 88888567999999999987554 444434468888777
Q ss_pred HHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEE-e-cccchh
Q 005823 461 FQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF-T-ICSIED 538 (675)
Q Consensus 461 ~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~-~-~~~~~~ 538 (675)
+.+.+.+.+ ..++.+.+++++|..........+.| .+ ..+++.++. + -.+|..+|.-+ . ...+..
T Consensus 279 a~~~~~y~~-~~K~~v~f~rpFWee~~~l~G~~~tD------~~--~~~i~~~s~-~---~~~G~gVl~g~~~~g~~A~~ 345 (450)
T COG1231 279 AAKGVPYGS-ATKIGVAFSRPFWEEAGILGGESLTD------LG--LGFISYPSA-P---FADGPGVLLGSYAFGDDALV 345 (450)
T ss_pred HhcCcCcch-heeeeeecCchhhhhcccCCceEeec------CC--cceEecCcc-c---cCCCceEEEeeeecccccee
Confidence 777766554 67999999999987653122223332 12 245666554 2 22466665542 2 234445
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc-Cc----eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCC
Q 005823 539 WEGLAQKDYDAKKELVADEIINRLENKLFPGLK-QS----IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 613 (675)
Q Consensus 539 w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~----i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~ 613 (675)
|..+++ ++.++.++.++. +++|+-. +. ..+.|...|.+ .|.+..++.+....+ -|..
T Consensus 346 ~~~~~~-------~~r~~~vl~~l~-~~~g~~a~~~f~~~~~~~W~~dpwt--------~G~~aa~~~g~~~~~--~~~l 407 (450)
T COG1231 346 IDALPE-------AERRQKVLARLA-KLFGDEAADPFDYGASVDWSKDPWT--------LGGTAAYPPGQRTKL--YPTL 407 (450)
T ss_pred EecCCH-------HHHHHHHHHhHh-hhCChhhccccccceeeecccCCcC--------CccccccCCcccccc--cccc
Confidence 655543 678899999999 8999432 22 22233333322 343443433322211 2334
Q ss_pred CCCCCcEEEeC-CCc-cCCCChhHHhhhHHHHHHHHHHHhC
Q 005823 614 TTGINGLYCVG-DSC-FPGQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 614 ~t~i~gLylaG-~~~-~pG~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
..+.+.+|+|| ..+ ..++.++||+.||++||.+|...+.
T Consensus 408 ~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 408 PAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred cCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 46789999999 332 2256899999999999999987653
No 27
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.3e-23 Score=228.21 Aligned_cols=432 Identities=18% Similarity=0.178 Sum_probs=231.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeE-EccccccccCCCCCCchHHHHHHHHHcC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT-FDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~-~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
.+.++|||||||++||+||.+|...|++|+|||+.+++|||+.|++..+.. +|+|+++++|... +.+.-+.+++|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~----npl~~l~~qlg 88 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYN----NPLALLSKQLG 88 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCc----cHHHHHHHHhC
Confidence 456799999999999999999999999999999999999999999977665 9999999998654 25777888899
Q ss_pred CceeEeeCCCeEEEEcCCCeEEEEcC-CHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005823 234 CEMEVIPDPTTVHFHLPNDLSVRVHR-EYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
++.....+.... +...++....... ..+.... .++................ +. ...+....
T Consensus 89 l~~~~~~~~~~l-~~~~~~~~~~~~d~~~~~~~~--------------~l~~~~~~~~~~~~~~~~~-i~--~~~~~~~~ 150 (501)
T KOG0029|consen 89 LELYKVRDTCPL-FNENGGESDKVFDDFVEQEFN--------------RLLDDASNLEQRLDNEIIG-IS--DDSFGEAL 150 (501)
T ss_pred cccceecccccc-cccCCcccccccccchhhhhH--------------HHHHHHhhhhhhhhhcccc-cc--cccHHHHH
Confidence 876443322111 1111111110000 0110000 1111100000000000000 00 00000000
Q ss_pred cChhhhhHHhhhccccHHHHHHHhCC-CHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcC---cccccCCCHHHH
Q 005823 313 KRPLECLTLAYYLPQNAGNIARKYIK-DPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFG---GINYPVGGVGGI 388 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---g~~~p~gG~~~l 388 (675)
.... .... ..........+.. +..+...+...+.. ...............+...+ ......+|...+
T Consensus 151 ~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v 221 (501)
T KOG0029|consen 151 EAFL---SASR--LMKTLLELLLEGEADKVLQWHLVNLELT----FIAHLENASARLWDQDELFGGGGIHLLMKGGYEPV 221 (501)
T ss_pred HhHH---HHHH--HHHhhHHHhhhhhhhHHHHHHHHHHHHH----hhccHhHhhHHhhhhhhhcccccchhHhhCCccHH
Confidence 0000 0000 0000000000000 00111001000000 00000000011111111111 124557788888
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhh-ccCCCCCChHHHHHHHhhcc
Q 005823 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGK-LLKGEQLPKEEENFQKLYVK 467 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~-Ll~~~~lp~~~~~~~~~~~~ 467 (675)
...++. |.+|+++..|.+|.+.++..+.|++.++..+.+|.||++++...+-.. +.-.+.+|.++.++++++..
T Consensus 222 ~~~la~-----~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~ 296 (501)
T KOG0029|consen 222 VNSLAE-----GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGF 296 (501)
T ss_pred HhhcCC-----CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCC
Confidence 887776 789999999999999766533466667767999999999987665331 33356799999999999876
Q ss_pred CCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEeccc-chhhccCChhh
Q 005823 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGLAQKD 546 (675)
Q Consensus 468 ~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~~~~~~ 546 (675)
+. ..+|.+.|++.+|+++.+.-.. ..++-. ....+ .++-+.+ -.+...++.+.... ...+
T Consensus 297 g~-~~Kv~l~F~~~fW~~~~d~fg~-~~~~~~-~~~~~-~f~~~~~--------~~~~~~l~~~~~~~~a~~~------- 357 (501)
T KOG0029|consen 297 GL-VNKVILEFPRVFWDQDIDFFGI-VPETSV-LRGLF-TFYDCKP--------VAGHPVLMSVVVGEAAERV------- 357 (501)
T ss_pred Cc-eeEEEEEeccccCCCCcCeEEE-cccccc-ccchh-hhhhcCc--------cCCCCeEEEEehhhhhHHH-------
Confidence 54 7899999999999755432111 111100 00000 0111111 11222333333322 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCC--Cc---CceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCc-E
Q 005823 547 YDAKKELVADEIINRLENKLFPG--LK---QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGING-L 620 (675)
Q Consensus 547 ~~~~ke~~~~~il~~L~~~~~P~--l~---~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~g-L 620 (675)
+...++++++.++..|+ ++|++ .. +..+..|-..+ ...|+|...+...+... .+..+.++.| +
T Consensus 358 ~~~~~~~~~~~~~~~l~-k~f~~~~~~~p~~~~vt~w~~d~--------~~~gsys~~~~~~~~~~--y~~l~~pi~~~~ 426 (501)
T KOG0029|consen 358 ETLSDSEIVKKAMKLLR-KVFGSEEVPDPLDALVTRWGTDP--------LSGGSYSYVAVGSDGDD--YDRLAEPIKNRV 426 (501)
T ss_pred hcCCHHHHHHHHHHHHH-HHhccCcCCCccceeeeeecccc--------cCCccccccCCCCChhH--HHHHhccccCcE
Confidence 34457899999999998 88882 22 22222222211 22566655444333111 1223578888 9
Q ss_pred EEeCCCccCC--CChhHHhhhHHHHHHHHHHHhC
Q 005823 621 YCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 621 ylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
||||..|-.. +.|.||+.||.++|..|+..+.
T Consensus 427 ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 427 FFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred EecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 9999887322 4899999999999999998876
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.91 E-value=4.4e-23 Score=214.45 Aligned_cols=438 Identities=20% Similarity=0.234 Sum_probs=234.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcC-
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG- 233 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG- 233 (675)
...+|+|||||+|||+||.+|.+.|. .|+|+|+.++.|||+.|....+..+|.|+++++|..+ +.+.++.++.|
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~g----NpVY~la~~~g~ 95 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEG----NPVYELAKEYGD 95 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCC----ChHHHHHHHhCc
Confidence 34689999999999999999997765 6999999999999999999877799999999998443 34677888777
Q ss_pred CceeEeeCCCeEE--EEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhH-HHhh
Q 005823 234 CEMEVIPDPTTVH--FHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIY-LFGQ 310 (675)
Q Consensus 234 l~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 310 (675)
++.-....+.... ....+|.. -+..+.+.+.+.........+ .........++...+. .+..
T Consensus 96 ~~~~~~tg~~~~~~~~~~~~g~~-----V~~~~~~~~~~~~~~~~~~~r----------~~~~~~~~~SvG~~ln~~~~~ 160 (498)
T KOG0685|consen 96 LKLLEVTGPAYVDNFHTRSNGEV-----VPEELLDELNEITVTLSDKLR----------EAEIAHDEGSVGEYLNSEFWD 160 (498)
T ss_pred cceeccCCccccceeEEEecCcc-----CcHHHHHHHHHHHHhhhhhcc----------cccccCccccHHHHHHHHHHH
Confidence 2211111111110 01112211 122233222211100000000 0000000000000000 0000
Q ss_pred hhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcC--cccccCCCHHHH
Q 005823 311 FFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFG--GINYPVGGVGGI 388 (675)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--g~~~p~gG~~~l 388 (675)
....+.+ +. .++-+....+..++..++.+.+..+..+.+....... ....+ ......-|...+
T Consensus 161 ~~~~~e~--------~~-----~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey--~~~~ge~~~~~~~kGy~~i 225 (498)
T KOG0685|consen 161 ELRGPEN--------PE-----IDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEY--TECPGEELLIWNKKGYKRI 225 (498)
T ss_pred Hhccccc--------cc-----hhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccce--eecCchhhheechhHHHHH
Confidence 0000000 00 0011111222233344443333222222222111000 00111 223334577788
Q ss_pred HHHHHHHHHHc----C--cEEEecceeeEEEEeC-CeEEEEEeCCCCEEEcCEEEECCChhhHHh---hccCCCCCChHH
Q 005823 389 AKSLAKGLADK----G--SEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDTFG---KLLKGEQLPKEE 458 (675)
Q Consensus 389 ~~~L~~~l~~~----G--v~v~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~---~Ll~~~~lp~~~ 458 (675)
.+.|.+.+.+. | .+++++++|.+|..++ +.+ .|++.||+.+.||+||++++...+-. +|+ .++||..+
T Consensus 226 L~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF-~P~LP~~K 303 (498)
T KOG0685|consen 226 LKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLF-VPPLPAEK 303 (498)
T ss_pred HHHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhc-CCCCCHHH
Confidence 87777765443 2 3456679999999875 445 59999999999999999998654421 244 35799999
Q ss_pred HHHHHhhccCCcEEEEEEeeccccCCCCCCccceee-ccchhhhcc-C---CCceEEecCCCCCCCCCCCCceEEEEEec
Q 005823 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVL-EDDWNRLEE-P---YGSIFLSIPTVLDSSLAPEGHHILHIFTI 533 (675)
Q Consensus 459 ~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~-~~~~~~~~~-~---~~~i~~~~~s~~d~~~ap~G~~~l~~~~~ 533 (675)
.+++.++..+. +.++++.+.+++||++...-.+++ .++...+.. . +..++.-.+..+. | +++...+.
T Consensus 304 ~~AIe~lgfGt-v~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~----~---~vL~gWia 375 (498)
T KOG0685|consen 304 QRAIERLGFGT-VNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWA----P---NVLLGWIA 375 (498)
T ss_pred HHHHHhccCCc-cceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcc----h---hhhheecc
Confidence 99999998876 779999999999998754333443 333121111 0 0112222222211 1 23333332
Q ss_pred cc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc-----CceEEEEecChhHHHHHhcCCCCcccCCCCCC---C
Q 005823 534 CS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-----QSIAFREIGSPKTHRRYLARDQGTYGPMPRGT---P 604 (675)
Q Consensus 534 ~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-----~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~---~ 604 (675)
.. +.... ..++|++.+.+...|. ++..+.. .-+-..|...|. .+|+|.+.+.+. .
T Consensus 376 G~~~~~me-------~lsdEev~e~~~~~lr-~fl~n~~iP~p~kilRs~W~snp~--------frGSYSY~svgs~~~d 439 (498)
T KOG0685|consen 376 GREARHME-------TLSDEEVLEGLTKLLR-KFLKNPEIPKPKKILRSQWISNPF--------FRGSYSYRSVGSDGSD 439 (498)
T ss_pred CCcceehh-------hCCHHHHHHHHHHHHH-HhcCCCCCCCchhhhhhcccCCCc--------cCceeeEeeccccccc
Confidence 21 11112 2345778888888887 6554422 111112333332 267776654321 1
Q ss_pred CCCCCCC---CCCCCCCcEEEeCCCccCC--CChhHHhhhHHHHHHHHHHHhCC
Q 005823 605 KGLLGMP---FNTTGINGLYCVGDSCFPG--QGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 605 ~~~~~~p---~~~t~i~gLylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
.+.+..| ...+.-|.+-|||..||.- .++.||+.||++.|+++++.+..
T Consensus 440 ~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 440 TGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred cchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 1222222 2234557899999999764 47899999999999999986543
No 29
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=7.9e-21 Score=202.11 Aligned_cols=442 Identities=16% Similarity=0.163 Sum_probs=244.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee-CCeEEccccccccCCCCCCchHHHHHHHHHcCCce
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
++|+|+|||+|||+||++|+.+|++|+|+|+++++||.+.+++. +|...|.|.|++++++ ..+.+++++++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y-----~n~~~ll~~~~~~~ 75 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY-----YNLLTLLKELPIED 75 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhH-----HHHHHHhhhCCchh
Confidence 36999999999999999999999999999999999999999984 6889999999999854 45678888888765
Q ss_pred eEeeCCCeEEE-EcC--CCeE--EEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005823 237 EVIPDPTTVHF-HLP--NDLS--VRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 237 ~~~~~~~~~~~-~~~--~g~~--~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
....+.....+ ... .|.. +..+..+. ....+..++..- .+. ..+.....-..
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~------------p~~~~~~~l~~~--------~~~---~~~~~~~~~~l 132 (485)
T COG3349 76 RLQLREHTKTFVGSGTRPGAIGRFARPDAPQ------------PTNGLKAFLRLP--------QLP---RREKIRFVLRL 132 (485)
T ss_pred eeehHhhhhhhcccCCCCCcccccccCCCCC------------cchhhhhhhhcc--------ccC---HHHHhHHhhcc
Confidence 44333222111 000 1110 11111100 001111111000 000 00000000000
Q ss_pred hcChh-hhhHHhhhccccHHHHHHHhCCC-HHHHHHHhhhhhhhccCCCCCchHHHHH---HHHHHhh-c-CcccccCCC
Q 005823 312 FKRPL-ECLTLAYYLPQNAGNIARKYIKD-PQLLSFIDAECFIVSTINALQTPMINAS---MVLCDRH-F-GGINYPVGG 384 (675)
Q Consensus 312 ~~~~~-~~~~~~~~~~~s~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~-~-~g~~~p~gG 384 (675)
...+. +...+.++...++.+++++.-.. ...++.+...........++..++.... ..+.... . .-....+|+
T Consensus 133 ~~~~~g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~ 212 (485)
T COG3349 133 GDAPIGADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGS 212 (485)
T ss_pred ccccchhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCC
Confidence 00111 23445566778888888886443 3445666665555555666666652211 1111111 1 123445666
Q ss_pred H-HHHHHHHHHHHHHcCcEEEecceeeEEEEeC----CeEEEEEeCCCCEE---EcCEEEECCChhhHHhhccCCCCCCh
Q 005823 385 V-GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRLSDGREF---YAKTIISNATRWDTFGKLLKGEQLPK 456 (675)
Q Consensus 385 ~-~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~----~~v~gV~~~~G~~i---~ad~VI~A~g~~~~~~~Ll~~~~lp~ 456 (675)
. ..+...+.+.+.+.|.+++.+.+|++|..+. .+++|+.+. +... .++.++.+.+... +...++.+.-+.
T Consensus 213 ~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~-~~~~~ps~W~~~ 290 (485)
T COG3349 213 PDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQR-FKRDLPSEWPKW 290 (485)
T ss_pred CcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccch-HhhcCccccccc
Confidence 5 5677899999999999999999999998763 346777766 4433 3444555444333 334444322211
Q ss_pred HHHHHHHhh-ccCCcEEEEEEeeccccCCCCCCccceeec-cchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecc
Q 005823 457 EEENFQKLY-VKAPSFLSIHMGVKAEVLPPDTDCHHFVLE-DDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTIC 534 (675)
Q Consensus 457 ~~~~~~~~~-~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~ 534 (675)
.. +...+ .+..++.++++.++...++....-+.+.+. ..|. ..+....+.-.+.... ....+|.....-....
T Consensus 291 ~~--f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s--~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~ 365 (485)
T COG3349 291 SN--FDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWS--DDTLGGVVADLALTSP-DYVEPGAGCYLEKVLA 365 (485)
T ss_pred cc--ccccccccccceeEEEEeecCccccccccchhhhhhccccc--cccCCceeeeccccch-hhccccchhhhhhhhc
Confidence 11 11111 134457788999987654332211111111 1111 1111122222222211 2333343211111112
Q ss_pred cchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCce-EEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCC
Q 005823 535 SIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSI-AFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 613 (675)
Q Consensus 535 ~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i-~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~ 613 (675)
+..+|. .+.++++.....+.++ .++|...... ....+.++ .+.|...|...+ .||..
T Consensus 366 ~~~~~~-------~~~~~~~~a~~e~~~~-~~vP~~~~a~~~~~~i~~~----------q~~~~~~pgs~~----~rP~~ 423 (485)
T COG3349 366 PGWPFL-------FESDEAIVATFEKELY-ELVPSLAEAKLKSSVLVNQ----------QSLYGLAPGSYH----YRPEQ 423 (485)
T ss_pred cccccc-------ccchhhHHHHHHHHhh-hcCCchhcccccccceecc----------ccccccCCCccc----cCCCC
Confidence 222332 2345677777888887 7888765432 22333333 233444444332 47888
Q ss_pred CCCCCcEEEeCCCccC--CCChhHHhhhHHHHHHHHHHHhCCccc
Q 005823 614 TTGINGLYCVGDSCFP--GQGVIAVAFSGVMCAHRVAADIGLEKK 656 (675)
Q Consensus 614 ~t~i~gLylaG~~~~p--G~Gv~gA~~SG~~aA~~Il~~~g~~~~ 656 (675)
.|+++|++++||++.. -..|++|..||+.||+.|++.++....
T Consensus 424 ~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 424 KTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred CCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhcCc
Confidence 8999999999999842 247999999999999999988774443
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.84 E-value=4.2e-20 Score=178.45 Aligned_cols=327 Identities=23% Similarity=0.286 Sum_probs=188.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
.+|+|||+||+||+||+.|+.+|+.|+||||+.-+|||..|.+.+|..||.|+.++..- ...+.+.++.+..+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~-----~~~F~~~Ve~~~~~-- 74 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPR-----DELFLRAVEALRDD-- 74 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCC-----chHHHHHHHHHHhC--
Confidence 36999999999999999999999999999999999999999999999999998887521 11233322222110
Q ss_pred EeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhh
Q 005823 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLE 317 (675)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (675)
|. +..+.. ..+
T Consensus 75 --------------gl-V~~W~~-------------------------------------------~~~----------- 85 (331)
T COG3380 75 --------------GL-VDVWTP-------------------------------------------AVW----------- 85 (331)
T ss_pred --------------Cc-eeeccc-------------------------------------------ccc-----------
Confidence 00 000000 000
Q ss_pred hhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHH
Q 005823 318 CLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLA 397 (675)
Q Consensus 318 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l~ 397 (675)
.+..+. . ....++ .-|.-.-||.+|++.|+.-+
T Consensus 86 -----------------~~~~~~-~------------~~~~d~----------------~pyvg~pgmsalak~LAtdL- 118 (331)
T COG3380 86 -----------------TFTGDG-S------------PPRGDE----------------DPYVGEPGMSALAKFLATDL- 118 (331)
T ss_pred -----------------ccccCC-C------------CCCCCC----------------CccccCcchHHHHHHHhccc-
Confidence 000000 0 000000 11333457778888777666
Q ss_pred HcCcEEEecceeeEEEEeCCeEEEEEeCCC-CEEEcCEEEECCChhhHHhhccCC--CCCChHHHHHHHhhccCCcEEEE
Q 005823 398 DKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWDTFGKLLKG--EQLPKEEENFQKLYVKAPSFLSI 474 (675)
Q Consensus 398 ~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G-~~i~ad~VI~A~g~~~~~~~Ll~~--~~lp~~~~~~~~~~~~~~s~~~v 474 (675)
+|+++++|++|...++.++ +.+++| +...+|.||+|+++..+. .||.. ..+|...+..+....+.| +.++
T Consensus 119 ----~V~~~~rVt~v~~~~~~W~-l~~~~g~~~~~~d~vvla~PAPQ~~-~LLt~~~~~~p~~l~~~~a~V~y~P-c~s~ 191 (331)
T COG3380 119 ----TVVLETRVTEVARTDNDWT-LHTDDGTRHTQFDDVVLAIPAPQTA-TLLTTDADDLPAALRAALADVVYAP-CWSA 191 (331)
T ss_pred ----hhhhhhhhhhheecCCeeE-EEecCCCcccccceEEEecCCCcch-hhcCcccccchHHHHHhhccceehh-HHHH
Confidence 7999999999998866654 888665 467899999999988774 46643 467877766666655555 4466
Q ss_pred EEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHH
Q 005823 475 HMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELV 554 (675)
Q Consensus 475 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~ 554 (675)
.++|..+..-|. ...++.+ .+..++ .. +..-+.+.|.|.. +.+- ...+|. ++.++..+|+.
T Consensus 192 ~lg~~q~l~~P~---~G~~vdg------~~laWl--a~-d~sK~g~~p~~~~-~vvq---asp~wS---r~h~~~~~e~~ 252 (331)
T COG3380 192 VLGYPQPLDRPW---PGNFVDG------HPLAWL--AR-DASKKGHVPDGEI-WVVQ---ASPDWS---REHLDHPAEQV 252 (331)
T ss_pred HhcCCccCCCCC---CCcccCC------Ceeeee--ec-cccCCCCCCcCce-EEEE---eCchHH---HHhhcCCHHHH
Confidence 677765432121 1122221 233222 22 2234566777762 2221 122563 44555566666
Q ss_pred HHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCCChh
Q 005823 555 ADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVI 634 (675)
Q Consensus 555 ~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~ 634 (675)
++.+-.... .+.+.--+...+ ...++| . |.. |.... -..+-...+--+||+||||++ |+=++
T Consensus 253 i~~l~aA~~-~~~~~~~~~p~~------s~~H~W----r--YA~-P~~~~---~~~~L~ad~~~~l~~cGDwc~-GgrVE 314 (331)
T COG3380 253 IVALRAAAQ-ELDGDRLPEPDW------SDAHRW----R--YAI-PNDAV---AGPPLDADRELPLYACGDWCA-GGRVE 314 (331)
T ss_pred HHHHHHhhh-hccCCCCCcchH------HHhhcc----c--ccc-ccccc---cCCccccCCCCceeeeccccc-Ccchh
Confidence 644333333 233211111111 111122 1 221 11100 001111233469999999985 56799
Q ss_pred HHhhhHHHHHHHHHHHh
Q 005823 635 AVAFSGVMCAHRVAADI 651 (675)
Q Consensus 635 gA~~SG~~aA~~Il~~~ 651 (675)
||.+||..+|+.|++.|
T Consensus 315 gA~LSGlAaA~~i~~~L 331 (331)
T COG3380 315 GAVLSGLAAADHILNGL 331 (331)
T ss_pred HHHhccHHHHHHHHhcC
Confidence 99999999999998764
No 31
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.83 E-value=3e-18 Score=186.21 Aligned_cols=326 Identities=17% Similarity=0.265 Sum_probs=195.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCC--------------------eEEcccccccc
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDG--------------------YTFDVGSSVMF 214 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g--------------------~~~d~G~~~~~ 214 (675)
+.++||||||+|++|+.+|..|++.|++|+++|+++..||+.+|+...+ +.+|..++.++
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 4579999999999999999999999999999999999999999874332 23444455554
Q ss_pred CCCCCCchHHHHHHHHHcCCce--eEeeCCCeEEEEc-CCCeEEEEcCC-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 005823 215 GFSDKGNLNLITQALAAVGCEM--EVIPDPTTVHFHL-PNDLSVRVHRE-YSDFVAELTSKFPHEKEGVLAFYGECWKIF 290 (675)
Q Consensus 215 g~~~~~~~~~~~~ll~~lGl~~--~~~~~~~~~~~~~-~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ 290 (675)
. ...+.+++...++.- ++.... ..+.+ .+|.....|.+ .+.+...+...+ ++..+.+|+.......
T Consensus 82 ~------~G~lv~lL~~s~v~ryleF~~l~--g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~--eKr~l~kfl~~v~~~~ 151 (443)
T PTZ00363 82 A------SGELVKILLHTDVTRYLEFKVID--GSYVYQKEGKIHKVPATDMEALSSPLMGFF--EKNRCKNFLQYVSNYD 151 (443)
T ss_pred c------CChHHHHHhhcCccceeeeEEec--eEEEEecCCeEEECCCCHHHHhhCCCcchh--hHHHHHHHHHHHHhhc
Confidence 2 124556666666532 222222 22222 55666666664 334444444333 5566666665442211
Q ss_pred HHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH-
Q 005823 291 NALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV- 369 (675)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~- 369 (675)
. ..+ .. .....+...++.++++++..++..+.++.............+.|+......
T Consensus 152 ~----------~~~-~~-----------~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri 209 (443)
T PTZ00363 152 E----------NDP-ET-----------HKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRI 209 (443)
T ss_pred c----------CCh-hh-----------hcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHH
Confidence 0 000 00 000112346788999999888888877654332221111122333222211
Q ss_pred --HH---Hhh-cCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 370 --LC---DRH-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 370 --~~---~~~-~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+. ..+ ...+.||.||+++|+++|++.+...|++++++++|++|..++ +++++|++++|+++.|+.||++...+
T Consensus 210 ~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 210 KLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccc
Confidence 11 111 134578999999999999999999999999999999999875 67889999999999999999855432
Q ss_pred hHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCC-CCCccceeeccchhhhccCCCceEEecCCCCCCCCC
Q 005823 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPP-DTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA 521 (675)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~a 521 (675)
. . ..+ ....+....+.++.+.... +.....++++..- +.+ -..+|+.+.+ .+...+
T Consensus 290 p-------~-----~~~-------~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~--~~~-~~~i~v~~~s-~~~~~c 346 (443)
T PTZ00363 290 P-------D-----KVK-------KVGKVIRCICILNHPIPNTNNANSCQIIIPQKQ--LGR-KNDIYIMLVS-SNHGVC 346 (443)
T ss_pred c-------c-----ccc-------cccEEEEEEEEEcccccccCcCccEEEEECCcc--cCC-CCCEEEEEec-CCCCcC
Confidence 1 1 100 0111333444556554111 1112235555421 111 1246765543 244668
Q ss_pred CCCceEEEEEeccc
Q 005823 522 PEGHHILHIFTICS 535 (675)
Q Consensus 522 p~G~~~l~~~~~~~ 535 (675)
|.|+.++++.+...
T Consensus 347 p~g~~i~~~st~~~ 360 (443)
T PTZ00363 347 PKGKYIAIISTTVE 360 (443)
T ss_pred CCCcEEEEEEEecC
Confidence 99999988887653
No 32
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.78 E-value=2.1e-16 Score=162.15 Aligned_cols=434 Identities=16% Similarity=0.129 Sum_probs=240.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCe--EEEEecCCCCCCccee-EeeCCeEEccccccccCCCCCCchHHHHHHHHH
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGAR--VLVLEKYVIPGGSSGY-YERDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~--v~~~e~~~~~gg~~~t-~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (675)
....+|+|||||++||++|++|++++-+ |+|+|+.+++||.++| ...+|+.||-|+..+-+..+.+ ....+++.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g--~~~l~lv~d 86 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGG--AETLDLVSD 86 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcch--hHHHHHHHH
Confidence 4568999999999999999999999766 5669999999999999 5578999999999998655533 246788999
Q ss_pred cCCceeEeeCCCe-----EEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhH
Q 005823 232 VGCEMEVIPDPTT-----VHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIY 306 (675)
Q Consensus 232 lGl~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (675)
+|++.+.++-+.. .++.+..+....++........... -|..+.-+..+
T Consensus 87 LGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l--~p~~k~L~~a~------------------------ 140 (491)
T KOG1276|consen 87 LGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSL--QPFGKPLLEAF------------------------ 140 (491)
T ss_pred cCccceeeecCCCChhhhheeeccCcccccCCccccccccccc--CcccchhHHHH------------------------
Confidence 9997665542211 2333334444444433221110000 00000000000
Q ss_pred HHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HHHHHh-----------
Q 005823 307 LFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVLCDR----------- 373 (675)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~----------- 373 (675)
+.+.++... -..-..+++.+++++.|.++..-.+++..+....+.++.+.++.... +.....
T Consensus 141 -l~e~fr~~~----~~~~~dESV~sF~~RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~ 215 (491)
T KOG1276|consen 141 -LRELFRKKV----SDPSADESVESFARRRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIR 215 (491)
T ss_pred -HhhhccccC----CCCCccccHHHHHHHhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHH
Confidence 011111100 00112467778888888866666777777666666677666654221 000000
Q ss_pred ---------------------hcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeE-EEEEeCCCC-E
Q 005823 374 ---------------------HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKA-VGVRLSDGR-E 429 (675)
Q Consensus 374 ---------------------~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v-~gV~~~~G~-~ 429 (675)
.....+..+||.+.+.+++.+.|.+..+.|.++-++..+... .+++ ...+..++. .
T Consensus 216 ~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~ 295 (491)
T KOG1276|consen 216 AKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQR 295 (491)
T ss_pred HHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCcee
Confidence 011234568899999999999999888888888888888754 2322 223334444 2
Q ss_pred EEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCC-CccceeeccchhhhccCCCce
Q 005823 430 FYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDT-DCHHFVLEDDWNRLEEPYGSI 508 (675)
Q Consensus 430 i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~i 508 (675)
+..+++..+.++.. +.++++. +.....+++.++.+ +++.+|++.|..+....+. ....++.++. ..++..+
T Consensus 296 ~~~~~~~~t~~~~k-~a~ll~~--~~~sls~~L~ei~y-~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~----~~~~~~L 367 (491)
T KOG1276|consen 296 VVVSYDAATLPAVK-LAKLLRG--LQNSLSNALSEIPY-VPVAVVNTYYPKEKIDLPLQGFGLLVPSEP----KNGFKTL 367 (491)
T ss_pred eeccccccccchHH-hhhhccc--cchhhhhhhhcCCC-CceEEEEEeccCcccccccccceeeccCCC----CCCCcee
Confidence 34455555666554 4567764 22333345555544 4577888888775211111 1233333211 1222222
Q ss_pred EEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHH
Q 005823 509 FLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRY 588 (675)
Q Consensus 509 ~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~ 588 (675)
-+.+.+...|.++|.++.+++..... ..+|... ....|++.+.+.++|. +++ +++......++. -|++-
T Consensus 368 G~ifdS~~Fp~~~~s~~vtvm~gg~~-~~n~~~~-----~~S~ee~~~~v~~alq-~~L-gi~~~P~~~~v~---l~~~c 436 (491)
T KOG1276|consen 368 GTIFDSMLFPDRSPSPKVTVMMGGGG-STNTSLA-----VPSPEELVNAVTSALQ-KML-GISNKPVSVNVH---LWKNC 436 (491)
T ss_pred EEEeecccCCCCCCCceEEEEecccc-cccCcCC-----CCCHHHHHHHHHHHHH-HHh-CCCCCcccccce---ehhhc
Confidence 22233444556666665555443322 2244322 1234678888888887 544 555443322221 01100
Q ss_pred hcCCCCcccCCCCCCCCCCCCCCCCCCCC--CcEEEeCCCccCCCChhHHhhhHHHHHHHHH
Q 005823 589 LARDQGTYGPMPRGTPKGLLGMPFNTTGI--NGLYCVGDSCFPGQGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 589 ~~~~~G~yg~~p~~~~~~~~~~p~~~t~i--~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il 648 (675)
.... ..|+. ...... . ...+.. .+|+++|.+ +.|.++..++++|+.+|.++.
T Consensus 437 iPqy--~vGh~--~~le~a-~--~~l~~~~g~~l~l~G~~-y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 437 IPQY--TVGHD--DVLEAA-K--SMLTDSPGLGLFLGGNH-YGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ccce--ecchH--HHHHHH-H--HHHHhCCCCceEeeccc-cCCCChhHHHHhhHHHHHhhc
Confidence 0000 00100 000000 0 011222 499999998 678999999999999998764
No 33
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.73 E-value=1.6e-16 Score=170.00 Aligned_cols=217 Identities=24% Similarity=0.373 Sum_probs=121.8
Q ss_pred CcccccCCC---HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCC
Q 005823 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (675)
Q Consensus 376 ~g~~~p~gG---~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~ 452 (675)
.+++++.+| ...++++|.+.+++.|++|+.+++|++|..+++++++|++.+|+ +.||.||+|+|++.. .++...
T Consensus 134 ~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~--~l~~~~ 210 (358)
T PF01266_consen 134 GGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSP--QLLPLL 210 (358)
T ss_dssp EEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHH--HHHHTT
T ss_pred hhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccce--eeeecc
Confidence 466777888 68999999999999999999999999999999999999999997 999999999999864 333321
Q ss_pred CCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEe
Q 005823 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (675)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~ 532 (675)
..+. .+. ......+.++.... .. .+.+.+.+.. ..+...+|+. |. + |...+ .+
T Consensus 211 ~~~~-------~~~---~~~~~~~~~~~~~~--~~-~~~~~~~~~~---~~~~~~~~~~-p~-------~-g~~~i--g~ 263 (358)
T PF01266_consen 211 GLDL-------PLR---PVRGQVLVLEPPES--PL-APAILFPPVI---FGPSDGVYIR-PR-------P-GGVLI--GT 263 (358)
T ss_dssp TTSS-------TEE---EEEEEEEEEEGCCS--GS-SSEEEEEEEC---ESSCTEEEEE-EE-------T-TEEEE--EE
T ss_pred cccc-------ccc---ccceEEEEEccCCc--cc-cccccccccc---ccccccceec-cc-------c-ccccc--cc
Confidence 1110 000 12223333432211 11 1111111100 0111112221 10 1 22222 11
Q ss_pred cccchhhccCChhh-----HHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCC
Q 005823 533 ICSIEDWEGLAQKD-----YDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGL 607 (675)
Q Consensus 533 ~~~~~~w~~~~~~~-----~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~ 607 (675)
.. ..|....... ....+++ .+++++.++ +++|++.+.-+.... .|.+...|+..| +
T Consensus 264 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~-~~~p~l~~~~v~~~~-------------~g~r~~t~d~~p--~ 324 (358)
T PF01266_consen 264 AD--GNYDPGPSPEDSSGEDPDVDEE-IDELLERLA-RLLPGLGDAEVVRSW-------------AGIRPFTPDGRP--I 324 (358)
T ss_dssp SE--CEEEESSSHHHHSHHHHHHHHH-HHHHHHHHH-HHSGGGGGSEEEEEE-------------EEEEEEETTSEC--E
T ss_pred cc--ccccccccccccccccccccHH-HHHhHHHHH-HHHHHhhhccccccc-------------cceeeeccCCCe--e
Confidence 11 1111111111 1223444 778999998 899999865443221 233333343322 1
Q ss_pred CCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHH
Q 005823 608 LGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHR 646 (675)
Q Consensus 608 ~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~ 646 (675)
++ ..+..+|||+++.. .|.|+..|..+|+.+|++
T Consensus 325 ig---~~~~~~~l~~~~g~--~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 325 IG---ELPGSPNLYLAGGH--GGHGFTLAPGLAELLADL 358 (358)
T ss_dssp EE---EESSEEEEEEEECE--TTCHHHHHHHHHHHHHHH
T ss_pred ee---ecCCCCCEEEEECC--CchHHHHHHHHHHHHhcC
Confidence 11 12457899999774 478999999999988874
No 34
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.69 E-value=2.7e-15 Score=149.87 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=156.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe----eCCeEEccccccccCCCCCCchHHHHHHHH
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE----RDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~----~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (675)
.+..+|+|||+|++||+||+.|+++ ++|++||++.+.||+++|.. -.|+.+|+|.+++.+.. +..+.++++
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~t----Ypnl~~Lf~ 80 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERT----YPNLTRLFK 80 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCC----cchHHHHHH
Confidence 3467899999999999999999986 69999999999999999984 34679999999887533 234778999
Q ss_pred HcCCceeEeeCCCeEEEEcCCCeEEEEc--CCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHH
Q 005823 231 AVGCEMEVIPDPTTVHFHLPNDLSVRVH--REYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLF 308 (675)
Q Consensus 231 ~lGl~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (675)
.+|.+.+ .....+.+.+.+|. +.+. ..+..+.. ..-.-....+..++..........
T Consensus 81 ~iGv~t~--as~Msf~v~~d~gg-lEy~g~tgl~~L~a---qk~n~l~pRf~~mlaeiLrf~r~~--------------- 139 (447)
T COG2907 81 TIGVDTK--ASFMSFSVSLDMGG-LEYSGLTGLAGLLA---QKRNLLRPRFPCMLAEILRFYRSD--------------- 139 (447)
T ss_pred HcCCCCc--ccceeEEEEecCCc-eeeccCCCccchhh---ccccccchhHHHHHHHHHHHhhhh---------------
Confidence 9998633 22222333333221 1111 11111100 000000001111111111111100
Q ss_pred hhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHH-HHHhhhhh-hhcc--CCCCCchHHHHHHHHHHhh-------cCc
Q 005823 309 GQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLL-SFIDAECF-IVST--INALQTPMINASMVLCDRH-------FGG 377 (675)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~~~~~~~-~~~~--~~~~~~p~~~~~~~~~~~~-------~~g 377 (675)
............+..+++++.--..... .++..... ++++ .+....|+.+. +.++..+ ..-
T Consensus 140 -------~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~-~~f~~nhGll~l~~rp~ 211 (447)
T COG2907 140 -------LAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNF-LVFTDNHGLLYLPKRPT 211 (447)
T ss_pred -------ccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHH-HHHHhccCceecCCCCc
Confidence 0000111122344555554432222111 11111111 1110 01111122221 2232222 123
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChH
Q 005823 378 INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKE 457 (675)
Q Consensus 378 ~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~ 457 (675)
|..+.||+...++.|...+ +++|.++++|.+|..-.+++. |...+|++-.+|.||+|+.+..++ .||++ .-|+
T Consensus 212 wrtV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~-l~~~~G~s~rFD~vViAth~dqAl-~mL~e-~sp~- 284 (447)
T COG2907 212 WRTVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDGVV-LVNADGESRRFDAVVIATHPDQAL-ALLDE-PSPE- 284 (447)
T ss_pred eeEcccchHHHHHHHhccc---cceeecCCceeeeeeCCCceE-EecCCCCccccceeeeecChHHHH-HhcCC-CCHH-
Confidence 4556889999999988777 468999999999998766554 555679988999999999999876 56654 3344
Q ss_pred HHHHHHhhccCCcEEEEEEeeccccCC
Q 005823 458 EENFQKLYVKAPSFLSIHMGVKAEVLP 484 (675)
Q Consensus 458 ~~~~~~~~~~~~s~~~v~l~l~~~~~p 484 (675)
+++.+..+.|+. +...+.-+...+|
T Consensus 285 e~qll~a~~Ys~--n~aVlhtd~~lmP 309 (447)
T COG2907 285 ERQLLGALRYSA--NTAVLHTDASLMP 309 (447)
T ss_pred HHHHHHhhhhhh--ceeEEeecccccc
Confidence 444677777654 3333334444444
No 35
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.64 E-value=3.9e-14 Score=157.14 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=52.7
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++++.+.+|. .+++..|++.+++.|++|+.+++|++|.. ++. +.|++.+| ++.||+||+|+++|.
T Consensus 170 ~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~-~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 170 EGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP-AVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred EEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc-eEEEeCCc-EEECCEEEEcccccc
Confidence 3556666653 68999999999999999999999999974 333 45778777 599999999999885
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.64 E-value=1e-12 Score=144.36 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=59.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCCcceeEe--eCCeEEccccccccCCCCCCchHHHHHH
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQA 228 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~d~G~~~~~g~~~~~~~~~~~~l 228 (675)
....+|+|||||++||+||++|++. |++|+|||+.+.+||++.++. ..||.++.|..... .+..+.++
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~~------~y~~l~~l 93 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREMEN------HFECLWDL 93 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCccc------hHHHHHHH
Confidence 3457999999999999999999996 689999999999999998755 67999988876422 45567777
Q ss_pred HHHc
Q 005823 229 LAAV 232 (675)
Q Consensus 229 l~~l 232 (675)
++.+
T Consensus 94 l~~i 97 (576)
T PRK13977 94 FRSI 97 (576)
T ss_pred HHhc
Confidence 7665
No 37
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.63 E-value=1e-13 Score=150.06 Aligned_cols=219 Identities=16% Similarity=0.193 Sum_probs=116.7
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCC
Q 005823 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQ 453 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~ 453 (675)
+++.+.+|. ..++..+.+.+.+.|++++++++|++|..+++.+ .|++++| ++.+|.||+|+|+|.. .+++...
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G~~~~--~l~~~~~ 212 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGV-TVTTADG-TYEAKKLVVSAGAWVK--DLLPPLE 212 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeE-EEEeCCC-EEEeeEEEEecCcchh--hhccccc
Confidence 344455553 5778888888888999999999999999877765 4888877 6999999999998863 4444211
Q ss_pred CChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEec
Q 005823 454 LPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTI 533 (675)
Q Consensus 454 lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~ 533 (675)
+|.. ..-...+.++...-.........+.... ... ..+|+ .|. .+|..++ +-..
T Consensus 213 ~~i~------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~-~~~y~-~p~-------~~~~~l~-ig~~ 266 (376)
T PRK11259 213 LPLT------------PVRQVLAWFQADGRYSEPNRFPAFIWEV----PDG-DQYYG-FPA-------ENGPGLK-IGKH 266 (376)
T ss_pred CCce------------EEEEEEEEEecCCccCCccCCCEEEEec----CCC-ceeEe-ccC-------CCCCceE-EEEC
Confidence 2110 0111112222110000000000000000 000 00221 111 1122121 1111
Q ss_pred ccchhhccCChhhH--HHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCC
Q 005823 534 CSIEDWEGLAQKDY--DAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMP 611 (675)
Q Consensus 534 ~~~~~w~~~~~~~~--~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p 611 (675)
.. ..+.. ....+ ....++..+.+++.+. +++|.+.+ +... +.|.+...|+..| .++
T Consensus 267 ~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~P~~~~-~~~~--------------~~g~~~~t~D~~P--~ig-- 324 (376)
T PRK11259 267 NG-GQEIT-SPDERDRFVTVAEDGAELRPFLR-NYLPGVGP-CLRG--------------AACTYTNTPDEHF--IID-- 324 (376)
T ss_pred CC-CCCCC-ChhhccCCCCcHHHHHHHHHHHH-HHCCCCCc-cccc--------------eEEecccCCCCCc--eee--
Confidence 10 00000 00000 0011456777788888 89998876 3322 2444555565444 222
Q ss_pred CCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 005823 612 FNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 612 ~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~ 650 (675)
....++|||++..+ .|+|+.-+...|+.+|+.|+..
T Consensus 325 -~~~~~~gl~~~~G~--~g~G~~~ap~~g~~la~li~~~ 360 (376)
T PRK11259 325 -TLPGHPNVLVASGC--SGHGFKFASVLGEILADLAQDG 360 (376)
T ss_pred -cCCCCCCEEEEecc--cchhhhccHHHHHHHHHHHhcC
Confidence 12347899998875 4789999999999999999864
No 38
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.61 E-value=2.3e-13 Score=147.49 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=53.1
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+++.+.+|. ..+++.|.+.+++.|++++.+++|++|..+++++. |++.+| ++.+|.||+|+|.+.
T Consensus 133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~-v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVT-VKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEE-EEeCCC-EEEeCEEEEecCcch
Confidence 445555553 57888999999999999999999999988777654 777766 699999999999875
No 39
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.60 E-value=3.2e-13 Score=148.19 Aligned_cols=68 Identities=21% Similarity=0.361 Sum_probs=57.0
Q ss_pred CcccccCCC---HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG---~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
+++++|.+| ...++++|.+.+++.|++|+++++|++|..+++++++|++.++ ++.||.||+|+|+|..
T Consensus 188 ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 188 GGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred eEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 455666655 3688899999999999999999999999988888777887765 6999999999999863
No 40
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.59 E-value=6e-13 Score=145.57 Aligned_cols=209 Identities=22% Similarity=0.326 Sum_probs=116.0
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhhH-HhhccCC
Q 005823 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDT-FGKLLKG 451 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~~-~~~Ll~~ 451 (675)
+++.+.+|. ..++.+|.+.++++|++++.+++|++|+.+ ++++++|++.+| ++.++.||+|++.+.. +.++++.
T Consensus 171 a~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~ 249 (407)
T TIGR01373 171 GLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGF 249 (407)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCC
Confidence 344444443 467888999999999999999999999864 567778888888 5999999999998863 2333321
Q ss_pred CCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEE
Q 005823 452 EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF 531 (675)
Q Consensus 452 ~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~ 531 (675)
.+|... . ...+.+..+. ++.. ..++...+ ..+|+. |. ++|. +.+-
T Consensus 250 -~~~~~~--------~-----~~~~~~~~~~-~~~~--~~~~~~~~--------~~~y~~-p~-------~~g~--~~ig 294 (407)
T TIGR01373 250 -RLPIES--------H-----PLQALVSEPL-KPII--DTVVMSNA--------VHFYVS-QS-------DKGE--LVIG 294 (407)
T ss_pred -CCCcCc--------c-----cceEEEecCC-CCCc--CCeEEeCC--------CceEEE-Ec-------CCce--EEEe
Confidence 122110 0 0111111111 1100 11111110 012221 11 1232 1111
Q ss_pred eccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCC
Q 005823 532 TICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGM 610 (675)
Q Consensus 532 ~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~ 610 (675)
.... ...... . ...+..+.+++.+. +++|++++.-+... |.|.+..+|+..| .++.
T Consensus 295 ~~~~~~~~~~~--~-----~~~~~~~~l~~~~~-~~~P~l~~~~~~~~-------------w~G~~~~t~D~~P--iIg~ 351 (407)
T TIGR01373 295 GGIDGYNSYAQ--R-----GNLPTLEHVLAAIL-EMFPILSRVRMLRS-------------WGGIVDVTPDGSP--IIGK 351 (407)
T ss_pred cCCCCCCccCc--C-----CCHHHHHHHHHHHH-HhCCCcCCCCeEEE-------------eccccccCCCCCc--eeCC
Confidence 1100 000000 0 01234566777777 78999976422211 2566666666554 2222
Q ss_pred CCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 005823 611 PFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 611 p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~ 650 (675)
.+.+|+|++..+ .|+|+..|...|+.+|+.|+..
T Consensus 352 ----~~~~gl~~a~G~--~g~G~~~ap~~G~~la~li~~~ 385 (407)
T TIGR01373 352 ----TPLPNLYLNCGW--GTGGFKATPASGTVFAHTLARG 385 (407)
T ss_pred ----CCCCCeEEEecc--CCcchhhchHHHHHHHHHHhCC
Confidence 235899998864 4789999999999999998754
No 41
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.58 E-value=1e-12 Score=143.92 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=53.2
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC-----CEEEcCEEEECCChhhH
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G-----~~i~ad~VI~A~g~~~~ 444 (675)
++++++.+|. ..++..|.+.+++.|++|+.+++|++|..+++.++ |.+.++ .++.||.||+|+|+|..
T Consensus 184 ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 184 GGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred eEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCCccceEecCEEEECCCcChH
Confidence 4566666543 57788999999999999999999999998777664 443332 36899999999999863
No 42
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.54 E-value=2e-13 Score=140.85 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=56.9
Q ss_pred CcccccC-CCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCC
Q 005823 376 GGINYPV-GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNAT 440 (675)
Q Consensus 376 ~g~~~p~-gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g 440 (675)
.|-.+|. ...+.|+++|.+.+++.||+|+++++|.+|..++.. ..|.+.+|+++.||.+|+|+|
T Consensus 100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEcCCCCEEEccEEEEecC
Confidence 4666777 778899999999999999999999999999988744 458899998999999999999
No 43
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.51 E-value=4.1e-12 Score=147.18 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++++++.+|. ..++++|.+.+++ |++|+.+++|++|..++++++ |++++|..+.+|.||+|+|.+.
T Consensus 395 ~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 395 GGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred CcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEE-EEECCCcEEECCEEEECCCCCc
Confidence 5677777774 6899999999988 999999999999998888775 8888887788999999999886
No 44
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.48 E-value=1.2e-11 Score=134.47 Aligned_cols=65 Identities=25% Similarity=0.185 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+.+.|++.+++.|++++.+++|+.+..+++.++.+...++.++.|+.||.|.|+...+.+.++.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 44456888999999999999999999998877665555555789999999999988777666654
No 45
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.47 E-value=8e-12 Score=125.12 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe--CCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+-.+++...+++.|+.|+-+..|+.+... .+..++|++.+|..+.|+.+|+|+|+|. .+||+.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence 466678889999999999999999999853 4456679999999999999999999997 467773
No 46
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.46 E-value=2.6e-11 Score=133.17 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+-+.|.+.+++.|++|+.+++|++|..+++++++|+ .+|+++.||.||.|.|....+.+.+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE-ADGDVIEAKTVILADGVNSILAEKL 170 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEE-cCCcEEECCEEEEEeCCCHHHHHHc
Confidence 4445577888889999999999999998888876665 4667899999999999876554443
No 47
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.45 E-value=3.4e-11 Score=130.78 Aligned_cols=67 Identities=27% Similarity=0.403 Sum_probs=54.7
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
++++.+.+|. ..++++|++.+++.| ..+..+++|..+..+. ++++|.+.+|+ +.||+||+|+|+|..
T Consensus 143 ~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 143 GGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred eeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 4556666664 689999999999999 5666689999998764 66789998887 999999999999863
No 48
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.41 E-value=3e-12 Score=138.00 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=49.7
Q ss_pred cccccCC-CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 377 GINYPVG-GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 377 g~~~p~g-G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+..||.. -...+.+.|.+.+++.|++|+++++|++|+.+++++..|++++++++.||.||+|+|-.
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----S
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCC
Confidence 5556654 35789999999999999999999999999999998888999777789999999999843
No 49
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.39 E-value=3.3e-10 Score=117.90 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++++++++|+++..+++++. |.+. ++.++++|.||.|.|.+..+.+.++
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~ 155 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKLG 155 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE-EEEcCccEEEEeCEEEECCCcchHHHHhcC
Confidence 4556678888889999999999999988887654 4444 3457999999999998776555443
No 50
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.38 E-value=1.7e-12 Score=103.19 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=57.4
Q ss_pred EECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHc
Q 005823 162 VIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (675)
Q Consensus 162 iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (675)
|||||++||++|++|+++|++|+|+|+.+.+||++.++..+|+.+|.|++.+....+ ...+.++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~---~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDD---YPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTS---CHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCC---chHHHHHHcCC
Confidence 899999999999999999999999999999999999999999999999999976422 23466666653
No 51
>PRK10015 oxidoreductase; Provisional
Probab=99.34 E-value=8.3e-10 Score=121.16 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+-+.|.+.+++.|++++.+++|+.|..+++++++|+. ++.++.||.||.|.|....+.+.+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~-~~~~i~A~~VI~AdG~~s~v~~~l 170 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA-GDDILEANVVILADGVNSMLGRSL 170 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe-CCeEEECCEEEEccCcchhhhccc
Confidence 34455778888889999999999999888888877765 445799999999999876654433
No 52
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.32 E-value=3.3e-10 Score=123.30 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++++++++|++|..+++.++ |++++|+++.+|.||.|.|.+..+.+.++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~g 176 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVR-LRLDDGRRLEAALAIAADGAASTLRELAG 176 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEE-EEECCCCEEEeCEEEEecCCCchHHHhhc
Confidence 5667788888889999999999999998877765 88888889999999999998876666554
No 53
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.32 E-value=4.1e-10 Score=122.14 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+.| ++|+.+++|++|..+++++. |++++|+++.+|.||.|.|.+..+.+.+.
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLDDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 56677888888888 99999999999988877764 88889999999999999998877666654
No 54
>PLN02697 lycopene epsilon cyclase
Probab=99.31 E-value=1.4e-09 Score=121.05 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.|.+.+.+.|+++ ++++|++|..+++.+..|.+.+|+++.|+.||.|.|++.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 55677888888889998 788999998877766556677888999999999999887
No 55
>PRK06847 hypothetical protein; Provisional
Probab=99.31 E-value=1.8e-09 Score=116.77 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+.+.|.+.+++.|++|+++++|++|..+++++ .|.+.+|+++.+|.||.|.|.+....+.+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDGV-TVTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEE-EEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 567778888888899999999999998877765 47788999999999999999887665544
No 56
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.31 E-value=1.8e-09 Score=117.21 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeC-CCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLS-DGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~-~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+.+ ++++.+++|+.+..+++.+. |+++ ||+++.||.||-|-|.+..+.+.++
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 67778889998877 89999999999999988887 8888 9999999999999999988888877
No 57
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.30 E-value=5.1e-10 Score=120.97 Aligned_cols=70 Identities=26% Similarity=0.487 Sum_probs=62.2
Q ss_pred hcCcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 374 HFGGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 374 ~~~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
..++.+.|..|. ..++++|+..+++.|+.|..+++|++|....++..+|++..|. |++.+||.|+|.|+-
T Consensus 172 v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWAR 244 (856)
T ss_pred heeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHHH
Confidence 346777887774 7899999999999999999999999999988887899999996 999999999999974
No 58
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.30 E-value=4.7e-11 Score=112.96 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=38.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+.||+||||||+||+||++|+++|.+|+|+||.-.+||-+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 57999999999999999999999999999999999998665
No 59
>PRK06185 hypothetical protein; Provisional
Probab=99.30 E-value=3.9e-10 Score=123.38 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEe--CCCC-EEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGR-EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~--~~G~-~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+. |++++.+++|+++..+++++++|++ .+|+ ++.||.||.|.|.+..+.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4555677767664 8999999999999998888876654 4664 7999999999999887776665
No 60
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.29 E-value=2e-10 Score=123.61 Aligned_cols=324 Identities=16% Similarity=0.241 Sum_probs=173.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee---------------------CCeEEccccccc
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER---------------------DGYTFDVGSSVM 213 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~---------------------~g~~~d~G~~~~ 213 (675)
+.+|||||+|.|+.-...|..|++.|.+|+.+|+++..||..+++.. ..|.+|.-+..+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 46799999999999999999999999999999999999999887652 135677777777
Q ss_pred cCCCCCCchHHHHHHHHHcCCc--eeEeeCCCeEEEEcCCCeEEEEcCCHHHHH-HHHHHhCCCcHHHHHHHHHHHHHHH
Q 005823 214 FGFSDKGNLNLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHREYSDFV-AELTSKFPHEKEGVLAFYGECWKIF 290 (675)
Q Consensus 214 ~g~~~~~~~~~~~~ll~~lGl~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~l~~~~p~~~~~~~~~~~~~~~~~ 290 (675)
+. ...+.++|-..++. +++..... .+.+.++....+|....+.. ..+... .++..+.+|+..+...
T Consensus 82 ~a------~g~LV~lLi~S~V~rYLEFk~V~~--~~v~~~~~l~kVP~sr~dvf~s~~lsl--~eKR~lmkFl~~v~~~- 150 (438)
T PF00996_consen 82 YA------RGPLVKLLISSGVTRYLEFKAVDG--SYVYKNGKLHKVPCSREDVFKSKLLSL--FEKRRLMKFLKFVANY- 150 (438)
T ss_dssp ET------TSHHHHHHHHCTGGGGSEEEEESE--EEEEETTEEEE--SSHHHHHC-TTS-H--HHHHHHHHHHHHHHHG-
T ss_pred hc------cCHHHHHHHhCCcccceEEEEcce--eEEEeCCEEeeCCCCHHHhhcCCCccH--HHHHHHHHHHHHHhhc-
Confidence 63 22455666666642 22322222 23334677777776654322 211111 1445555555443211
Q ss_pred HHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHH--
Q 005823 291 NALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASM-- 368 (675)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~-- 368 (675)
.... .......+....++.+++++|--++.++.++.....+.........|+..+..
T Consensus 151 ------~~~~---------------~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri 209 (438)
T PF00996_consen 151 ------EEDD---------------PSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERI 209 (438)
T ss_dssp ------CTTB---------------GGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHH
T ss_pred ------ccCC---------------cchhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHH
Confidence 0000 00000112334677888888877888888875322111111111223332221
Q ss_pred -HHHH---hh-cCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 369 -VLCD---RH-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 369 -~~~~---~~-~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.. .+ ...+.||..|.++|++++.+...=.|+.+.+|++|.+|.++ ++++.+|.. +|+++.|+.||. ++.
T Consensus 210 ~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~--dps 286 (438)
T PF00996_consen 210 KLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG--DPS 286 (438)
T ss_dssp HHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE--EGG
T ss_pred HHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE--CCc
Confidence 1111 11 23567899999999999999999999999999999999984 678888875 888999999995 333
Q ss_pred hHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCC-CCccceeeccchhhhccCCCceEEecCCCCCCCCC
Q 005823 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD-TDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA 521 (675)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~a 521 (675)
.. ++ + ......+....+.++.+..... .....++++..- . +.-..+|+...+ .+...+
T Consensus 287 y~-----p~-----~-------v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~--~-~~~~dIyv~~~s-s~~~~C 345 (438)
T PF00996_consen 287 YL-----PE-----K-------VKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQ--V-GRKSDIYVLQLS-SSTGVC 345 (438)
T ss_dssp GB-----GC-----G-------EEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGG--C-TSSS-EEEEEEE-GGGTSS
T ss_pred cC-----cc-----c-------ccccceEEEEEEEEcCCCCCCCCCceEEEecCCcc--c-CCCCCeEEEEEC-CCcccc
Confidence 21 11 0 0111124445556666653221 112234454321 1 111236664432 244568
Q ss_pred CCCceEEEEEecc
Q 005823 522 PEGHHILHIFTIC 534 (675)
Q Consensus 522 p~G~~~l~~~~~~ 534 (675)
|.|+.++++.+..
T Consensus 346 P~G~yi~~~St~~ 358 (438)
T PF00996_consen 346 PKGQYIAYVSTTV 358 (438)
T ss_dssp -TT-EEEEEEEEE
T ss_pred CCCcEEEEEEecc
Confidence 9999988887764
No 61
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.28 E-value=9.9e-11 Score=125.10 Aligned_cols=69 Identities=25% Similarity=0.381 Sum_probs=58.1
Q ss_pred CcccccCCC---HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCE-EEcCEEEECCChhhH
Q 005823 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE-FYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG---~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~-i~ad~VI~A~g~~~~ 444 (675)
++.+.|.+| ...++.+|++.++++|++|++|++|+.|..++++++.+.+.+|++ ++|+.||.|+|..+.
T Consensus 140 aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 140 AALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred eeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHH
Confidence 345566665 378999999999999999999999999999877666688888887 999999999997653
No 62
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.28 E-value=1.1e-09 Score=120.33 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCC-C--CEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD-G--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~-G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+. |++++++++|++|+.+++.+. |++.+ + .+++||.||.|.|.+..+.+.++
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 4666777777775 799999999999988777654 66653 3 36999999999999887766654
No 63
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.27 E-value=7.5e-11 Score=125.62 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=128.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeE-EccccccccCCCCCCchHHHHHHHHHcCCce
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYT-FDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~-~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
+||+|||||++||++|++|++.|.+|+|+|+.+.+||.+.+....|.. .+.|+|.++.. ...+.+++..+. ++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~-----~~~v~~~~~~~~-~~ 75 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTN-----NQYVWDYISPFF-EL 75 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecC-----cHHHHHHHHhhc-cc
Confidence 699999999999999999999999999999999999998887666644 58999988742 233445555432 11
Q ss_pred eEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcCh
Q 005823 237 EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHE-KEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRP 315 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (675)
.... ... ...-+|..+.+|-.... +..+++.+ ...+..++... .........+.+
T Consensus 76 ~~~~--~~~-~~~~~g~~~~~P~~~~~----i~~l~~~~~~~~~~~~l~~~---~~~~~~~~~~~~-------------- 131 (377)
T TIGR00031 76 NNYQ--HRV-LALYNNLDLTLPFNFNQ----FRKLLGVKDAQELQNFFNAQ---FKYGDHVPLEEL-------------- 131 (377)
T ss_pred ccee--EEE-EEEECCeEEccCCCHHH----HHHhcccchHHHHHHHHHHH---hhcccCCCCCCH--------------
Confidence 1111 111 12234666666654322 22222211 11111111111 000000000000
Q ss_pred hhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH-----HHHhh--cCcccccCCCHHHH
Q 005823 316 LECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV-----LCDRH--FGGINYPVGGVGGI 388 (675)
Q Consensus 316 ~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~--~~g~~~p~gG~~~l 388 (675)
+...++.-+.+.......++..+..-.++..+.+.++.....+ ..+.. ..-..+|++|..++
T Consensus 132 -----------~e~~d~~~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~ 200 (377)
T TIGR00031 132 -----------QEIADPDIQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKL 200 (377)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHH
Confidence 0111122333344444455555544444555665554432210 00001 12246899998888
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.|.+. .+++|++|+.+..+..+++++ .+.++ .+. +.||.+.+...
T Consensus 201 ~~~ml~~---~~i~v~l~~~~~~~~~~~~~~---~~~~~-~~~-~~vi~Tg~id~ 247 (377)
T TIGR00031 201 FEKMLDH---PLIDVKLNCHINLLKDKDSQL---HFANK-AIR-KPVIYTGLIDQ 247 (377)
T ss_pred HHHHHhc---CCCEEEeCCccceeeccccce---eeccc-ccc-CcEEEecCchH
Confidence 8877643 368999999777776544433 33433 233 78998655444
No 64
>PRK09126 hypothetical protein; Provisional
Probab=99.27 E-value=3.9e-10 Score=122.77 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=48.1
Q ss_pred HHHHHHHHH-HHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGL-ADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l-~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+.+.|.+.+ ++.|++|+++++|+++..+++.+ .|++++|+++.+|.||.|.|......+.++
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGA-QVTLANGRRLTARLLVAADSRFSATRRQLG 174 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhcC
Confidence 334455544 34689999999999998777665 488889999999999999998876666654
No 65
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.27 E-value=7.2e-11 Score=128.50 Aligned_cols=66 Identities=30% Similarity=0.415 Sum_probs=55.1
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++++.+.+|. ..+.++|.+.+++.|++++++++|++|..+++++ .|++.+| ++.+|.||+|+|.+.
T Consensus 136 ~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 136 GAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred ceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeE-EEEECCC-EEEeCEEEECCCcch
Confidence 3455666653 7899999999999999999999999998877765 5777777 699999999999886
No 66
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.26 E-value=4.3e-11 Score=135.21 Aligned_cols=69 Identities=26% Similarity=0.415 Sum_probs=55.2
Q ss_pred CcccccCCC--HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CC--CEEEcCEEEECCChhhH
Q 005823 376 GGINYPVGG--VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG--~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G--~~i~ad~VI~A~g~~~~ 444 (675)
++++++.|- ...++.++++.++++|++|+++++|++|..+++++++|++. +| .+|.|+.||+|+|+|..
T Consensus 137 ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 137 GAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EEEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 345555422 25788888899999999999999999999988888888863 23 36899999999999963
No 67
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.25 E-value=1.6e-09 Score=117.54 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+. |++++++++|++|..+++.++ |++.+|+++.||.||.|.|.+..+.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 6777788888884 999999999999988777664 77888888999999999998877666664
No 68
>PLN02463 lycopene beta cyclase
Probab=99.24 E-value=2.8e-09 Score=116.84 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
.+.+.|.+.+.+.|++++ .++|++|..+++++ .|++++|+++.||.||.|.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~-~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKS-LVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeE-EEEECCCCEEEcCEEEECcCCCcC
Confidence 455667788888899996 57899998877765 588999989999999999997653
No 69
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.23 E-value=3.1e-09 Score=115.69 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
+||+||||||+|++||+.|+++|++|+|+||....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976544
No 70
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.23 E-value=9.4e-09 Score=113.19 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=33.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+||+||||||+|++||+.|+++|++|+|+|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 456999999999999999999999999999999975
No 71
>PRK07045 putative monooxygenase; Reviewed
Probab=99.23 E-value=1.8e-09 Score=117.37 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHH-cCcEEEecceeeEEEEeCCe-EEEEEeCCCCEEEcCEEEECCChhhHHhhc
Q 005823 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGK-AVGVRLSDGREFYAKTIISNATRWDTFGKL 448 (675)
Q Consensus 387 ~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~-v~gV~~~~G~~i~ad~VI~A~g~~~~~~~L 448 (675)
.+.+.|.+.+.+ .|++++++++|++|..+++. ++.|++++|+++.+|.||-|-|....+++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 455667777654 57999999999999886444 456888999999999999999998877774
No 72
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=2.2e-10 Score=116.52 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCC-eEEEEEeCC-----------CCEEEcCEEEECCChhhHH
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRLSD-----------GREFYAKTIISNATRWDTF 445 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~-~v~gV~~~~-----------G~~i~ad~VI~A~g~~~~~ 445 (675)
.+...|.+.+++.|++|++++.|+++..+++ ++.||.+.. ..++.|+.||.|+|.+..+
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v 175 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEV 175 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHH
Confidence 6667788888999999999999999988665 788877532 2368999999999977643
No 73
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.22 E-value=1.8e-10 Score=124.23 Aligned_cols=62 Identities=29% Similarity=0.286 Sum_probs=48.8
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++++++.+|. ..++.+|.+.+.++ |++|+.+++|++|.. + .|++.+|+ +.||+||+|+|++.
T Consensus 132 ~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 132 GGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred EEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCCc-EEeCEEEECCCCCh
Confidence 3555565552 57888899888776 999999999999963 2 47777775 78999999999986
No 74
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.21 E-value=3.9e-09 Score=115.40 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+.+.|.+.+++.|++|+.+++|++|..+++.+. |++.+|+++.||.||.|.|.+..+.++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWL-LTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 5556778888888999999999999988777664 888899899999999999999888777754
No 75
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.21 E-value=1.3e-10 Score=128.56 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=55.3
Q ss_pred cccccCCC----HHHHHHHHHHHHHH----cC--cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 377 GINYPVGG----VGGIAKSLAKGLAD----KG--SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 377 g~~~p~gG----~~~l~~~L~~~l~~----~G--v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
+.+.|.+| ...++.+|.+.+++ .| ++|+++++|++|..++++++.|++.+| ++.||.||+|+|+|..
T Consensus 198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 45566543 26899999999998 78 789999999999988666667888877 5999999999999874
No 76
>PRK08244 hypothetical protein; Provisional
Probab=99.20 E-value=4.9e-09 Score=117.60 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe--CCC-CEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDG-REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~--~~G-~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+++.|++|+++++|++|..++++++ |++ .+| +++++|.||.|.|.+..+.+.++
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 3445577777888999999999999988877664 444 356 47999999999999887777764
No 77
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=4.4e-10 Score=113.89 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCC--eEEEEEeCC-----------CCEEEcCEEEECCChhhHH
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQG--KAVGVRLSD-----------GREFYAKTIISNATRWDTF 445 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~--~v~gV~~~~-----------G~~i~ad~VI~A~g~~~~~ 445 (675)
.+.+.|.+.+.+.|++++.++.|++|..+++ ++.||.++. ..++.|+.||.|+|....+
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v 172 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEI 172 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchH
Confidence 5566788888889999999999999998776 688887742 2378999999999965543
No 78
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.19 E-value=6.6e-09 Score=112.93 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.| ++++ +++|++|..+++.+. |++.+|+++.||.||.|.|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 56677888888888 8998 999999987777654 88888888999999999999877766664
No 79
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.19 E-value=9.7e-09 Score=111.77 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++. |++++.+++|+++..+++.+ .|++.+|+++.||.||.|.|.+..+.+.++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4556677777776 99999999999998777665 478888889999999999999987777665
No 80
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.19 E-value=8.3e-09 Score=112.16 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC------C--CEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD------G--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~------G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+.+.|++++.+ .|++|..+++.+. |++.+ | .++.||.||.|.|....+.+.++
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEE-EEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 34455777788889999765 5999987777653 65542 2 36899999999998877666554
No 81
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.19 E-value=8.3e-10 Score=123.79 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC--CCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+++++|++|+.+++++++|++. +|+ ++.++.||+|+|.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 4688889999999999999999999999888888888763 433 588999999999654
No 82
>PRK08013 oxidoreductase; Provisional
Probab=99.18 E-value=5.2e-09 Score=114.23 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+++. |++++++++|++|+.+++.+. |++.+|+++.||.||-|-|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4556677777775 799999999999988776654 77889999999999999999988877765
No 83
>PRK07588 hypothetical protein; Provisional
Probab=99.18 E-value=5.2e-09 Score=113.89 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+.+.|.+.+. .|++|+++++|++|+.+++.+. |++++|+++.+|.||.|.|.+....+.+
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence 34445555553 3799999999999998877765 8889999999999999999988776654
No 84
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.17 E-value=4.2e-09 Score=115.05 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+.|++|+++++|++|..+++.+. |++.+|+++.+|.||.|.|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVT-VTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEE-EEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 6777788888888999999999999988777664 78888989999999999998877666654
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.16 E-value=4.2e-09 Score=114.46 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+.|+..+++++|+++..+++.+. |++++|+++.+|.||.|.|.+..+.+.++
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEVT-VTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 4566777888777655588999999988877765 88888989999999999998877666654
No 86
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=2.2e-09 Score=121.32 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=51.2
Q ss_pred cCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CCC--EEEc-CEEEECCChhhH
Q 005823 381 PVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYA-KTIISNATRWDT 444 (675)
Q Consensus 381 p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~a-d~VI~A~g~~~~ 444 (675)
..+| ..|+.+|.+.+++.|++|+++++|++++.++++|+||... +|+ .+.+ +.||+|+|-+..
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 3445 8999999999999999999999999999878899998653 443 3556 579999997654
No 87
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.16 E-value=3.2e-10 Score=108.38 Aligned_cols=42 Identities=40% Similarity=0.647 Sum_probs=35.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.++||+|||||++||+||++|+++|++|+|+|+...+||...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 368999999999999999999999999999999999998664
No 88
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.15 E-value=1.2e-09 Score=121.82 Aligned_cols=62 Identities=31% Similarity=0.483 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC--CC--CEEEcCEEEECCChhh
Q 005823 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWD 443 (675)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VI~A~g~~~ 443 (675)
.++...+...|.+.+++.|++|+++++|++|+.+++++++|++. +| .++.++.||+|+|.+.
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 34556788999999999999999999999999888899998763 33 3588999999999654
No 89
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.15 E-value=1.5e-09 Score=119.21 Aligned_cols=60 Identities=30% Similarity=0.506 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
+...+.+.|.+.++++|++|+++++|++++.++++|+||... +|+ ++.|+.||+|+|...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 456889999999999999999999999999999999999876 455 578999999999765
No 90
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.14 E-value=5.3e-09 Score=104.84 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCC
Q 005823 552 ELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQ 631 (675)
Q Consensus 552 e~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~ 631 (675)
+...+.|+-.|. --+|.+....+.. .|.|.|...-- ...+.++ .++-.-|||++-+ +.|+
T Consensus 404 d~F~qkiwP~L~-nRVP~fetakVqs-------------aWaGyyD~Ntf-D~ngViG---~HP~y~Nly~atG--Fsgh 463 (509)
T KOG2853|consen 404 DYFYQKIWPHLA-NRVPAFETAKVQS-------------AWAGYYDHNTF-DDNGVIG---EHPLYTNLYMATG--FSGH 463 (509)
T ss_pred HHHHhhhhHHHH-hcccccceeeeee-------------hhccccccccc-ccCCccc---CCcceeeeeeeec--cccc
Confidence 456778888888 5678887543321 22455543211 1122333 2344679999766 5689
Q ss_pred ChhHHhhhHHHHHHHHHHH
Q 005823 632 GVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 632 Gv~gA~~SG~~aA~~Il~~ 650 (675)
|+.-++.-|+..|+.|+..
T Consensus 464 Gvqqs~avgRAiaElIldG 482 (509)
T KOG2853|consen 464 GVQQSPAVGRAIAELILDG 482 (509)
T ss_pred chhcchHHHHHHHHHHhcC
Confidence 9999999999999999864
No 91
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.14 E-value=1e-08 Score=111.69 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=48.6
Q ss_pred HHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+-+.|.+.+.+ .|++++++++|++|..+++++. |++++|+++.+|.||.|.|.+..+.+.++
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~~ 176 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDDGETLTGRLLVAADGSHSALREALG 176 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCChhhHHhhC
Confidence 33456666655 4799999999999987777664 88888888999999999998876666554
No 92
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.14 E-value=2e-08 Score=113.83 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeC--CC--CEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+-+.|.+.+.+. |++|+++++|++|+.++++++ |+++ +| ++++||.||-|.|....+.+.++
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 344566666664 899999999999998877765 6654 56 36999999999999988877775
No 93
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.12 E-value=2.7e-08 Score=108.17 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.|.+.+.+.|++++ .++|+.+..+++....|++.+|+++.|+.||.|.|.+.
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 556667888888899886 56799988774445568888888899999999999876
No 94
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.12 E-value=2e-08 Score=109.78 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+.+.|.+.+.+. |++++++++|++|..+++.+ .|++.+|+++.||.||.|-|....+.+.++
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEA-WLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 444566666654 79999999999998877765 488899999999999999998887776665
No 95
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.12 E-value=6.8e-08 Score=109.80 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEE-EEEeCCCC-EEEcCEEEECCChhhHHhhccCC
Q 005823 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAV-GVRLSDGR-EFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 388 l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~-gV~~~~G~-~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
+-+.|.+.+.+. |++|+++++|+++..+++.++ .++..+|+ ++.+|.||.|.|....+.+.++.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~ 193 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGL 193 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCC
Confidence 334566667665 689999999999998777654 12334554 68999999999998887777753
No 96
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.11 E-value=6.6e-10 Score=121.14 Aligned_cols=68 Identities=31% Similarity=0.513 Sum_probs=56.1
Q ss_pred CcccccCCCH--HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC-----EEEcCEEEECCChhhH
Q 005823 376 GGINYPVGGV--GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-----EFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG~--~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~-----~i~ad~VI~A~g~~~~ 444 (675)
+++.|+.+=. .+++...+..+.++|.+++..++|+++..+++ ++||++.|.+ +++|+.||.|+|||.-
T Consensus 152 ga~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 152 GAFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred ceEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 3555665543 47888888889999999999999999999988 8999987643 5899999999999963
No 97
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.11 E-value=1.3e-10 Score=126.35 Aligned_cols=117 Identities=21% Similarity=0.133 Sum_probs=93.0
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||++.+|++.|+++. ...++.|..++.++.+......+..+..+......+|+||||||+||+||..|++.|+.|+|+
T Consensus 74 vcp~~~~ceg~cv~~~-~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~ 152 (457)
T COG0493 74 VCPLGNLCEGACVLGI-EELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVF 152 (457)
T ss_pred cCCCCCceeeeeeecc-CCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEe
Confidence 7999999999999986 357899999999999999888776655443455689999999999999999999999999999
Q ss_pred ecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCce
Q 005823 187 EKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 187 e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
|+.+.+||+.. |.++.++.+.. ......++|...|.++
T Consensus 153 e~~~~~GGll~-yGIP~~kl~k~-----------i~d~~i~~l~~~Gv~~ 190 (457)
T COG0493 153 ERVALDGGLLL-YGIPDFKLPKD-----------ILDRRLELLERSGVEF 190 (457)
T ss_pred CCcCCCceeEE-ecCchhhccch-----------HHHHHHHHHHHcCeEE
Confidence 99999999887 44555443321 2334556677777543
No 98
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.09 E-value=1.1e-08 Score=108.79 Aligned_cols=208 Identities=18% Similarity=0.308 Sum_probs=121.6
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCC
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGE 452 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~ 452 (675)
++++.+.+|. ..++..|++.++++|++++.+++|++|..+++++++|.+.+| ++.||.||+|+|+|.. .+.+
T Consensus 124 ~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~--~l~~-- 198 (337)
T TIGR02352 124 GAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG--ELLP-- 198 (337)
T ss_pred eEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh--hccc--
Confidence 4666676664 789999999999999999999999999998888888988777 7999999999999874 3443
Q ss_pred CCChHHHHHHHhhccCCcEEEEEEeeccccCC-CCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEE
Q 005823 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLP-PDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIF 531 (675)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~ 531 (675)
+|. ...... .+. +..+..+ .+......+.. . .+|+ .|. +.|. .+ +-
T Consensus 199 -~~~---------~~~~g~-~~~--~~~~~~~~~~~~~~~~~~~--------~--~~y~-~p~-------~~g~-~~-iG 245 (337)
T TIGR02352 199 -LPL---------RPVRGQ-PLR--LEAPAVPLLNRPLRAVVYG--------R--RVYI-VPR-------RDGR-LV-VG 245 (337)
T ss_pred -CCc---------cccCce-EEE--eeccccccCCcccceEEEc--------C--CEEE-EEc-------CCCe-EE-EE
Confidence 221 111111 111 2211000 00000000100 0 1222 121 1232 11 11
Q ss_pred ecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCC
Q 005823 532 TICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMP 611 (675)
Q Consensus 532 ~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p 611 (675)
.......|.. ...++..+.+++.+. +++|.+.+.-+ ...+.|.+...++..| .++.
T Consensus 246 ~~~~~~~~~~-------~~~~~~~~~l~~~~~-~~~P~l~~~~~-------------~~~~~g~r~~t~D~~p--iig~- 301 (337)
T TIGR02352 246 ATMEESGFDT-------TPTLGGIKELLRDAY-TILPALKEARL-------------LETWAGLRPGTPDNLP--YIGE- 301 (337)
T ss_pred EeccccCccC-------CCCHHHHHHHHHHHH-HhCCCcccCcH-------------HHheecCCCCCCCCCC--EeCc-
Confidence 1111112211 012345667788888 88998865311 1223566665665444 2221
Q ss_pred CCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHH
Q 005823 612 FNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 649 (675)
Q Consensus 612 ~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~ 649 (675)
....+|+|+++.. .|.|+..+...|+..|+.|+.
T Consensus 302 --~~~~~~~~~~~g~--~g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 302 --HPEDRRLLIATGH--YRNGILLAPATAEVIADLILG 335 (337)
T ss_pred --cCCCCCEEEEccc--ccCceehhhHHHHHHHHHHhc
Confidence 2345799998875 478999999999999999874
No 99
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.08 E-value=1.3e-10 Score=137.75 Aligned_cols=93 Identities=19% Similarity=0.067 Sum_probs=72.1
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCC--CCC----CC-CCCCCccEEEECCChhHHHHHHHHHHc
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGG--NEG----MS-RGADDYDAIVIGSGIGGLVAATQLAVK 179 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~iig~g~~g~~~a~~l~~~ 179 (675)
.||++.+||+.|+++ ..++.|..+|+++++.....+.. ... .+ .....++|+|||||||||+||++|+++
T Consensus 252 VCp~~~~CE~~C~~~---~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~Lar~ 328 (944)
T PRK12779 252 VCPQELQCQGVCTHT---KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLLAVE 328 (944)
T ss_pred cCCCccCHHHhccCC---CcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHHHHC
Confidence 799999999999887 35999999999988753221110 000 01 123578999999999999999999999
Q ss_pred CCeEEEEecCCCCCCcceeEeeCC
Q 005823 180 GARVLVLEKYVIPGGSSGYYERDG 203 (675)
Q Consensus 180 g~~v~~~e~~~~~gg~~~t~~~~g 203 (675)
||+|+|||+.+.+||..+ +.++.
T Consensus 329 G~~VtVfE~~~~~GG~l~-yGIP~ 351 (944)
T PRK12779 329 GFPVTVFEAFHDLGGVLR-YGIPE 351 (944)
T ss_pred CCeEEEEeeCCCCCceEE-ccCCC
Confidence 999999999999999765 33443
No 100
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=1.8e-09 Score=119.73 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=52.8
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCC-eEEEEEe---CCCC--EEEcCEEEECCChhhH
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQG-KAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~-~v~gV~~---~~G~--~i~ad~VI~A~g~~~~ 444 (675)
++++.|.+|. ..++++|.+.++++|++|+++++|++|..+++ .+. |++ .+|+ ++.||.||+|+|.|..
T Consensus 165 gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 165 AANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred EEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence 3556676663 78999999999999999999999999988643 433 432 3342 6899999999998863
No 101
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.08 E-value=2.7e-08 Score=104.34 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
..+++.+.+.+++.|++|+++++|+.|+..++.+.+|.+++|+++.+|+||+|.|..
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 478899999999999999999999999999988888999999999999999999954
No 102
>PRK06753 hypothetical protein; Provisional
Probab=99.07 E-value=4.9e-08 Score=105.51 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+. +.+|+++++|++|..+++++. |++++|+++.+|.||-|-|.+...++.+.
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENETDKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecCCcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 34444555543 358999999999987777654 78889999999999999999888777665
No 103
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.07 E-value=8.2e-09 Score=117.61 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC--CC-EEEcC-EEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--GR-EFYAK-TIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~--G~-~i~ad-~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+++++|++|..+++++++|++.+ ++ ++.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 67889999999999999999999999999889999988754 33 46785 7999999775
No 104
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.06 E-value=4.4e-09 Score=120.35 Aligned_cols=58 Identities=29% Similarity=0.468 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe--CCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..++.+|++.++++|++|+.+++|++|..+ ++++++|++ .+|+ ++.+|.||+|+|+|.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 588999999999999999999999999887 477878776 2344 589999999999995
No 105
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.06 E-value=9.7e-08 Score=103.65 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+-..|.+.+.+. |++++.+++|++++.+++.++ |++++|+++++|.||.|.|....+++.++
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~g 174 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLESGAEIEAKWVIGADGANSQVRQLAG 174 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEECCCCEEEeeEEEEecCCCchhHHhcC
Confidence 444566665554 699999999999998877765 88899999999999999999888776664
No 106
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.05 E-value=4.4e-09 Score=117.95 Aligned_cols=58 Identities=28% Similarity=0.431 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---CC--EEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VI~A~g~~~~ 444 (675)
..++..+++.++++|++++.+++|++|..+++.+ +|++.+ |+ ++.|+.||+|+|+|..
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLW-HVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEE-EEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 5777888888999999999999999998876654 566543 53 6899999999999863
No 107
>PLN02985 squalene monooxygenase
Probab=99.05 E-value=1.5e-07 Score=105.41 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEe--CCCCE--EEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL--SDGRE--FYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~--~~G~~--i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+.+.|.+.+.+. |++++.+ .|+++..+++.+.+|++ .+|++ +.||.||.|.|.+..+++.+..
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~ 216 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLND 216 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhcc
Confidence 6667788877766 6888865 58888777777777776 35654 5689999999999887776653
No 108
>PRK07121 hypothetical protein; Validated
Probab=99.05 E-value=8.9e-09 Score=115.41 Aligned_cols=60 Identities=30% Similarity=0.474 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCC-CC--EEEc-CEEEECCChhh
Q 005823 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSD-GR--EFYA-KTIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~-G~--~i~a-d~VI~A~g~~~ 443 (675)
+...+.+.|.+.+++.|++|+++++|++|+.+ ++++++|+..+ ++ ++.| +.||+|+|.+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 45678999999999999999999999999986 46898987643 33 4788 99999999765
No 109
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.05 E-value=6.1e-09 Score=115.72 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=52.3
Q ss_pred CcccccCCC---HHHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCe-EEEEEe---CCCC--EEEcCEEEECCChhhH
Q 005823 376 GGINYPVGG---VGGIAKSLAKGLADKG-SEILYKANVTKVILEQGK-AVGVRL---SDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG---~~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~-v~gV~~---~~G~--~i~ad~VI~A~g~~~~ 444 (675)
++.+.|.+| ...++++|.+.+++.| ++|+++++|++|..++++ +. |.+ .+|+ ++.|+.||+|+|.|..
T Consensus 170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 355666665 3689999999999987 799999999999985443 43 443 3454 6899999999999864
No 110
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.04 E-value=2.8e-09 Score=117.56 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=51.2
Q ss_pred cccccCCC---HHHHHHHHHHHHHH-cCcEEEecceeeEEEEe-CCeEEEEE---eCCCC--EEEcCEEEECCChhhH
Q 005823 377 GINYPVGG---VGGIAKSLAKGLAD-KGSEILYKANVTKVILE-QGKAVGVR---LSDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 377 g~~~p~gG---~~~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~-~~~v~gV~---~~~G~--~i~ad~VI~A~g~~~~ 444 (675)
+.+.|.++ ...+.++|.+.+.+ .|++++++++|+.|..+ ++.++ |+ +.+|+ ++.||.||+|+|.|..
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 45566665 36888999999865 48999999999999877 55554 43 34453 6899999999999873
No 111
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.04 E-value=1.1e-07 Score=102.85 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+-+.|.+.+++.+ ++++++++|++|..+++.+. |.+.++ ++.||.||-|-|....+++.+..
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~~-~~~adlvIgADG~~S~vR~~l~~ 168 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFDDK-QIKCNLLIICDGANSKVRSHYFA 168 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEcCC-EEeeCEEEEeCCCCchhHHhcCC
Confidence 66677888887775 89999999999988777764 788776 89999999999999887776643
No 112
>PRK11445 putative oxidoreductase; Provisional
Probab=99.04 E-value=1.8e-07 Score=100.17 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe-CCCC--EEEcCEEEECCChhhHHhhccC
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~-~~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
|.+. .+.|+++++++.|++|..+++.+. |++ .+|+ ++.||.||.|.|....+.+.+.
T Consensus 105 L~~~-~~~gv~v~~~~~v~~i~~~~~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 105 LKSL-IPASVEVYHNSLCRKIWREDDGYH-VIFRADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred HHHH-HhcCCEEEcCCEEEEEEEcCCEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 4443 356899999999999988777654 654 5665 6899999999998877665554
No 113
>PRK06126 hypothetical protein; Provisional
Probab=99.03 E-value=3e-08 Score=112.78 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+-+.|.+.+++. |++|+++++|++|..++++++ |++ .+|+ ++.+|.||.|.|.+..+.+.++
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 445567777654 799999999999998877765 444 3464 6899999999999988777765
No 114
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.03 E-value=3.6e-10 Score=130.68 Aligned_cols=90 Identities=19% Similarity=0.091 Sum_probs=75.1
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||++..||..|+++.. ..++.|..+++++.+......+............+|+|||||++||+||.+|++.|++|+|+
T Consensus 278 vCp~~~~Ce~~C~~~~~-~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~ 356 (654)
T PRK12769 278 VCPQDRLCEGACTLRDE-YGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVY 356 (654)
T ss_pred cCCCCCChHHhccCCCC-CCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999999854 47999999999998877655543322222245689999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||...
T Consensus 357 E~~~~~GG~l~ 367 (654)
T PRK12769 357 DRHPEIGGLLT 367 (654)
T ss_pred ecCCCCCceee
Confidence 99999999765
No 115
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.01 E-value=4.4e-10 Score=129.41 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=78.4
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||++.+||..|+++.. ..++.|..+++++.+.....++............+|+|||+|++||++|+.|++.|++|+|+
T Consensus 261 vCp~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~ 339 (639)
T PRK12809 261 VCPQDRLCEGACTLKDH-SGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVF 339 (639)
T ss_pred cCCCCCChHHhccCCCc-CCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEE
Confidence 79999999999998854 47999999999999887666554432222345789999999999999999999999999999
Q ss_pred ecCCCCCCcceeEeeCCe
Q 005823 187 EKYVIPGGSSGYYERDGY 204 (675)
Q Consensus 187 e~~~~~gg~~~t~~~~g~ 204 (675)
|+.+.+||..+ +.++.+
T Consensus 340 e~~~~~GG~l~-~gip~~ 356 (639)
T PRK12809 340 DRHPEIGGMLT-FGIPPF 356 (639)
T ss_pred eCCCCCCCeee-ccCCcc
Confidence 99999999765 334433
No 116
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.01 E-value=6.8e-09 Score=114.74 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeC--CCC--EEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS--DGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~--~G~--~i~ad~VI~A~g~~~~ 444 (675)
..+.+.|.+.+++.|++|+++++|++|+.+ ++++++|++. +++ .+.++.||+|+|.+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 578899999999999999999999999985 5678887764 343 3688999999997754
No 117
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=3.6e-09 Score=105.81 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=131.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee--CC-eEEccccccccCCCCCCchHHHHHHHHHcC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER--DG-YTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~--~g-~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
.+|.+|||||++|+.+|..|++.|++|+|+||.+..||.|-+... .| ..+-.|+|+++. +...+++.+...-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT-----~~~~Vwdyv~~F~ 75 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHT-----DNKRVWDYVNQFT 75 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeec-----CchHHHHHHhhhh
Confidence 379999999999999999999999999999999999999987654 45 467789999984 3345666665542
Q ss_pred CceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 005823 234 CEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (675)
.-...... + +.+.+|..+.+|-++..+..-+...+ ..+..+.|...... ....
T Consensus 76 e~~~Y~hr---V-la~~ng~~~~lP~nl~ti~ql~G~~~--~p~~a~~~i~~~~~---~~~~------------------ 128 (374)
T COG0562 76 EFNPYQHR---V-LALVNGQLYPLPFNLNTINQLFGKNF--TPDEARKFIEEQAA---EIDI------------------ 128 (374)
T ss_pred hhhhhccc---e-eEEECCeeeeccccHHHHHHHhCccC--CHHHHHHHHHHhhc---cccc------------------
Confidence 21111111 1 34467888888877765444333222 11222233222110 0000
Q ss_pred ChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH-----HHHhhcCc--ccccCCCHH
Q 005823 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV-----LCDRHFGG--INYPVGGVG 386 (675)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~g--~~~p~gG~~ 386 (675)
..+++..+..-+++..+....++..+..-.++.+|.+.|+.....+ ..+.+... ...|++|.-
T Consensus 129 ----------~~~q~~ee~ais~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT 198 (374)
T COG0562 129 ----------AEPQNLEEQAISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYT 198 (374)
T ss_pred ----------cchhhhhhHHHHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHH
Confidence 0112222333334444445555555544445566766665432211 11111111 246888988
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++.+.|++ ...++|++||.-..+..... + +.+..||.+ |+.+
T Consensus 199 ~~~~kMl~---hp~I~V~Lntd~~~~~~~~~---------~--~~~~~Vvyt-G~iD 240 (374)
T COG0562 199 AMFEKMLD---HPNIDVRLNTDFFDVKDQLR---------A--IPFAPVVYT-GPID 240 (374)
T ss_pred HHHHHHhc---CCCceEEecCcHHHHhhhhc---------c--cCCCceEEe-cchH
Confidence 88777664 33679999997665532211 1 445588884 4444
No 118
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.00 E-value=4.3e-08 Score=100.84 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCC------C---------CEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSD------G---------REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~------G---------~~i~ad~VI~A~g~~~ 443 (675)
.+++..|-+.+++.|++|.-+..+.+|.++ ++.|.||-++| | -++.|+.-|+|-|...
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence 488899999999999999999999999986 67788887754 2 2578888999888653
No 119
>PRK12831 putative oxidoreductase; Provisional
Probab=99.00 E-value=3.9e-10 Score=124.86 Aligned_cols=89 Identities=19% Similarity=0.061 Sum_probs=75.0
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||.+..||..|+++.. ..++.|..+++++.+.....+.... .+...+.+||+|||||++||+||++|++.|++|+|+
T Consensus 92 vC~~~~~Ce~~C~r~~~-~~~v~I~~l~r~~~~~~~~~~~~~~-~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 92 VCPQESQCEGKCVLGIK-GEPVAIGKLERFVADWARENGIDLS-ETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred cCCCCCChHHHhcCCCC-CCCeehhHHHHHHHHHHHHcCCCCC-CCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999998855 4789999999999887655444322 334456789999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||.+.
T Consensus 170 e~~~~~GG~l~ 180 (464)
T PRK12831 170 EALHEPGGVLV 180 (464)
T ss_pred ecCCCCCCeee
Confidence 99999999764
No 120
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.99 E-value=6.1e-07 Score=96.90 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+-+.+.+.+. .++.+++++.|++|...++.+ .|++++|+++.|+.||-|.|+.
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~-~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGV-LVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceE-EEEECCCCEEEeeEEEECCCcc
Confidence 34455677777 566788999999998887744 4789999999999999998854
No 121
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.99 E-value=9.8e-09 Score=111.91 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+.+.|.+.+.+.| ++++++++|+++..+++.+. |++.+|+++.||.||.|.|.+......+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 45666777777765 89999999999987776664 7788898999999999999987765544
No 122
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.99 E-value=7.9e-10 Score=122.60 Aligned_cols=90 Identities=18% Similarity=0.068 Sum_probs=74.3
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||.+..||..|+++.. ..++.|..+++++.+................+..+|+|||+|++||++|..|++.|++|+|+
T Consensus 92 vC~~~~~Ce~~C~~~~~-~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~ 170 (467)
T TIGR01318 92 VCPQDRLCEGACTLNDE-FGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVF 170 (467)
T ss_pred cCCCCCChHHhCcCCCC-CCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 79999999999999854 47999999999998876544433322222345689999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||..+
T Consensus 171 e~~~~~gG~l~ 181 (467)
T TIGR01318 171 DRHPEIGGLLT 181 (467)
T ss_pred ecCCCCCceee
Confidence 99999999665
No 123
>PRK06996 hypothetical protein; Provisional
Probab=98.98 E-value=9.7e-08 Score=104.14 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC---CEEEcCEEEECCCh-hhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATR-WDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VI~A~g~-~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++++++++|+++..+++.++ |++.+| ++++||.||-|-|. .....+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 5667788889999999999999999987777664 667654 57999999999884 333334443
No 124
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.97 E-value=6.4e-10 Score=133.04 Aligned_cols=88 Identities=17% Similarity=0.051 Sum_probs=73.7
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||++.+||..|+++.. ..++.|..+++++++.........+ ......+||+|||||++||+||++|+++|++|+||
T Consensus 383 vCp~~~~Ce~~C~~~~~-~~pv~I~~ler~~~d~~~~~~~~~~--~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~ 459 (1006)
T PRK12775 383 VCPQETQCEAQCIIAKK-HESVGIGRLERFVGDNARAKPVKPP--RFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVY 459 (1006)
T ss_pred cCCCCCCHHHhCcCCCC-CCCeeecHHHHHHHHHHHHcCCCCC--CCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 79999999999999854 4799999999999887654443222 12234689999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||..+
T Consensus 460 E~~~~~GG~l~ 470 (1006)
T PRK12775 460 EALHVVGGVLQ 470 (1006)
T ss_pred ecCCCCcceee
Confidence 99999999765
No 125
>PRK07538 hypothetical protein; Provisional
Probab=98.97 E-value=2.6e-07 Score=101.32 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHH-cC-cEEEecceeeEEEEeCCeEEEEEeCCC-----CEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLAD-KG-SEILYKANVTKVILEQGKAVGVRLSDG-----REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~-~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G-----~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+.+ .| .+|+++++|+++..+++.++ +.+.++ +++.||.||-|-|......+.+.
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~ 172 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY 172 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence 455567766655 36 46999999999987665433 334332 47999999999999888776664
No 126
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.97 E-value=5.3e-08 Score=111.05 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC--CCC-EEEc-CEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR-EFYA-KTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G~-~i~a-d~VI~A~g~~~ 443 (675)
..+++.|.+.++++|++|+++++|++|+.+++++++|+.. ++. ++.+ +.||+|+|.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 5788999999999999999999999999888899888763 332 4788 99999999885
No 127
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.97 E-value=1.9e-08 Score=110.61 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEe-CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~-~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++ .|++|+++++|++|+.++++++||.. .+++ ++.|+.||+|+|...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 4688888888875 49999999999999888888888653 3554 589999999999754
No 128
>PRK07190 hypothetical protein; Provisional
Probab=98.97 E-value=9.7e-09 Score=114.40 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+-+.|.+.+++.|++|+++++|++|..++++++ |.+.+|+++.|+.||.|.|....+.+.++
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 445577778888999999999999998877765 56678889999999999999988877765
No 129
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=2.1e-08 Score=114.17 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeC-CCC--EEEcC-EEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS-DGR--EFYAK-TIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~-~G~--~i~ad-~VI~A~g~~~ 443 (675)
...+...|.+.+++.|++|+++++|++|+.+ +++|+||... +|+ ++.|+ .||+|+|...
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 3578888888899999999999999999986 6789998764 343 47787 5999999765
No 130
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=2.8e-09 Score=119.59 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC----CEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG----REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G----~~i~ad~VI~A~g~~~ 443 (675)
..++..++..++++|++++.+++|++|..+++. ++|++.++ .++.|+.||+|+|+|.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 577788888899999999999999999887664 45766554 2589999999999986
No 131
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.95 E-value=1.8e-07 Score=103.22 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcC---cEEEecceeeEEEEe------CCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKG---SEILYKANVTKVILE------QGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~G---v~v~~~~~V~~I~~~------~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.+ ++++++++|++|..+ ++..+.|++.+|++++||.||-|-|....+++.++
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 45566777777765 899999999999753 12223588899999999999999999988877765
No 132
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.95 E-value=4.1e-08 Score=106.49 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=56.2
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++.+++.+|. ..++.+|.+.+++ |++|+.+++|++|..+++++ .|++.+|+++.||+||+|+|+|.
T Consensus 122 gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~-~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 122 GGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGW-QLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred CceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeE-EEEeCCCCEEEcCEEEEcCCccc
Confidence 3556666664 6899999999998 99999999999999877764 58888888899999999999986
No 133
>PRK06184 hypothetical protein; Provisional
Probab=98.94 E-value=7.7e-09 Score=116.30 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCCEEEcCEEEECCChhhHHhhccC
Q 005823 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+-+.|.+.+.+.|++|+++++|++|..+++.++ |++ .++++++||.||.|.|.+..+.+.++
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 445677888888999999999999988777664 444 55678999999999999988777775
No 134
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.94 E-value=4.3e-08 Score=111.12 Aligned_cols=60 Identities=20% Similarity=0.367 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CCC--EEEcC-EEEECCChhhH
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad-~VI~A~g~~~~ 444 (675)
...+...|.+.+++.|++|+++++|++|+.++++|+||... +|+ ++.|+ .||+|+|....
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 35788899999999999999999999999989999998763 454 47785 69999996653
No 135
>PRK06834 hypothetical protein; Provisional
Probab=98.93 E-value=9e-09 Score=114.78 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+++.|++|+++++|++|..+++.+. |++.+|+++.+|.||.|.|.+..+.+.++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 4556678888888999999999999998877765 77788888999999999999887776664
No 136
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=2.6e-08 Score=114.41 Aligned_cols=55 Identities=13% Similarity=0.321 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
.+.|.+.+++.|++|++++.|++++.++++|+||... +|+ .+.|+.||+|+|-..
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 4667778888899999999999999988999999864 454 588999999999765
No 137
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.91 E-value=1.8e-08 Score=112.30 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+...|.+.+.+. |+++. .+.|++|..+++++.+|.+.+|.++.|+.||+|+|.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4456677777766 78874 66799999999999999999999999999999999653
No 138
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=3.4e-08 Score=112.14 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+.+.|++|++++.+++++.++++|+||... +|+ .+.|+.||+|+|...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688889988888899999999999999999999998764 333 578999999999765
No 139
>PLN02661 Putative thiazole synthesis
Probab=98.91 E-value=2.7e-08 Score=103.76 Aligned_cols=41 Identities=34% Similarity=0.687 Sum_probs=37.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCCCCcc
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSS 196 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~ 196 (675)
.++||+|||+|++|++||++|++. |++|+|+||...+||..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 468999999999999999999986 89999999999888733
No 140
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.91 E-value=3e-08 Score=112.47 Aligned_cols=42 Identities=48% Similarity=0.669 Sum_probs=38.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC--CCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~~ 197 (675)
.++||||||+|.+||+||+.+++.|.+|+||||.. ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 7788553
No 141
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.90 E-value=3.2e-08 Score=111.25 Aligned_cols=58 Identities=16% Similarity=0.349 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeC-CCC--EEEcC-EEEECCChhh
Q 005823 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad-~VI~A~g~~~ 443 (675)
..+...+.+.+.++ |++|+++++|++|+.++++|+||... +|+ ++.|+ .||+|+|.+.
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 45777777777664 99999999999999888899998753 343 57886 7999999764
No 142
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.90 E-value=1.1e-07 Score=108.27 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC-CC--EEEc-CEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYA-KTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~-G~--~i~a-d~VI~A~g~~~~ 444 (675)
..+.++|.+.+++.|++|+++++|++|+.++++|++|...+ |+ ++.+ +.||+|+|....
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 47889999999999999999999999998889999988754 33 4676 689999997754
No 143
>PRK07236 hypothetical protein; Provisional
Probab=98.90 E-value=5.4e-08 Score=105.74 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=42.0
Q ss_pred CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 400 GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 400 Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
+++|+++++|++|..+++.++ |++++|+++.+|.||.|-|....+++.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVT-ARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEE-EEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 468999999999998877765 8889999999999999999887776655
No 144
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.89 E-value=1.6e-08 Score=107.02 Aligned_cols=55 Identities=25% Similarity=0.459 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.+.+.+.++++ +++|. ..+|++|..+++++.||.+.+|+++.+|.||+|+|+.
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 3445566777774 57775 6789999999999999999999999999999999983
No 145
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.89 E-value=2.1e-09 Score=118.85 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=73.0
Q ss_pred CCCCCCCCCCcccccc-c--ccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeE
Q 005823 107 NFNGSTLRSEDLGCGE-S--ERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARV 183 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v 183 (675)
.||++..||..|+++. + ...++.|..+++++.+.....+......+.....+||+|||+|++||+||.+|++.|++|
T Consensus 80 vC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V 159 (449)
T TIGR01316 80 VCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSV 159 (449)
T ss_pred CCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcE
Confidence 7999999999998875 1 346899999999988765544332222233456789999999999999999999999999
Q ss_pred EEEecCCCCCCcce
Q 005823 184 LVLEKYVIPGGSSG 197 (675)
Q Consensus 184 ~~~e~~~~~gg~~~ 197 (675)
+|+|+.+.+||...
T Consensus 160 ~vie~~~~~GG~l~ 173 (449)
T TIGR01316 160 TVFEALHKPGGVVT 173 (449)
T ss_pred EEEecCCCCCcEee
Confidence 99999999998653
No 146
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.88 E-value=7.6e-08 Score=109.79 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+++.|++|++++.|++|+.++++++||.. .+|+ .+.|+.||+|+|...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 467788888888889999999999999998899988865 3564 588999999999765
No 147
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.88 E-value=2.1e-09 Score=120.97 Aligned_cols=97 Identities=21% Similarity=0.070 Sum_probs=85.3
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||.. ||+.|+++-. -.++.|-.++..+.+.+..++|-.+.++.....++|+|||+||+||+||-.|-+.|+.|+|+
T Consensus 1738 vcpap--cegactlgii-e~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vy 1814 (2142)
T KOG0399|consen 1738 VCPAP--CEGACTLGII-EPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVY 1814 (2142)
T ss_pred cCCCC--cCcceeeecc-cCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEE
Confidence 58875 9999999965 36788888999999999999999998888888999999999999999999999999999999
Q ss_pred ecCCCCCCcceeEeeCCeEEc
Q 005823 187 EKYVIPGGSSGYYERDGYTFD 207 (675)
Q Consensus 187 e~~~~~gg~~~t~~~~g~~~d 207 (675)
||.+++||... |.++.+..|
T Consensus 1815 er~dr~ggll~-ygipnmkld 1834 (2142)
T KOG0399|consen 1815 ERSDRVGGLLM-YGIPNMKLD 1834 (2142)
T ss_pred EecCCcCceee-ecCCccchh
Confidence 99999999776 555554444
No 148
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.88 E-value=8.3e-08 Score=109.86 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEE-eCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~-~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+++.|++|+.++.|++++. ++++|.||.. .+|+ .+.|+.||+|+|...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 57888999999999999999999999998 6788999864 3564 578999999998654
No 149
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.88 E-value=8.8e-08 Score=109.55 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.++++| ++|+.++.|++|..++++++||.. .+|+ .+.|+.||+|+|.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 356677888888876 999999999999988888888753 3554 589999999999765
No 150
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.88 E-value=4.4e-08 Score=106.62 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
....+.+.|.+.+++.|++++++++|++|..+++.+ .|++ +++++.+|.||+|+|...
T Consensus 103 ~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~-~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 103 SAADVLDALLNELKELGVEILTNSKVKSIKKDDNGF-GVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeE-EEEE-CCcEEEcCEEEECCCCcc
Confidence 356888999999999999999999999997766544 4776 466799999999999754
No 151
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.87 E-value=3.2e-07 Score=105.43 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCc--EEEecceeeEEEEeCC---eEEEEEeC------CC--CEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGS--EILYKANVTKVILEQG---KAVGVRLS------DG--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv--~v~~~~~V~~I~~~~~---~v~gV~~~------~G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+.+.|+ +++++++|+++..++. .| .|++. +| ++++||.||-|-|....+++.++
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 344567777877764 7889999999987642 24 35553 35 47999999999999988888775
No 152
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=1e-07 Score=108.86 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+++.|++|++++.|++++.++ ++|+||.. .+|+ .+.|+.||+|+|-..
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688999999999999999999999999875 78999875 3565 578999999999765
No 153
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.87 E-value=1.4e-08 Score=108.50 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe-C-CCC--EEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL-S-DGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~-~-~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+++.|++|+++++|+.+..++++++.+.. . +|+ +++||.||-|-|.+..+.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 56677889999999999999999999988887653322 2 343 6899999999999988777665
No 154
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.86 E-value=2.5e-09 Score=125.63 Aligned_cols=91 Identities=19% Similarity=0.050 Sum_probs=72.5
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||.+.+||..|+++.....++.|..+++++.+..................+||+|||||+|||+||++|+++|++|+|+
T Consensus 381 vC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~ 460 (752)
T PRK12778 381 VCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVF 460 (752)
T ss_pred cCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999998865436899999999987754332211111222346789999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||...
T Consensus 461 e~~~~~GG~l~ 471 (752)
T PRK12778 461 EALHEIGGVLK 471 (752)
T ss_pred ecCCCCCCeee
Confidence 99999998754
No 155
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.86 E-value=5.2e-08 Score=110.55 Aligned_cols=60 Identities=23% Similarity=0.417 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CCC--EEEcC-EEEECCChhhH
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAK-TIISNATRWDT 444 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad-~VI~A~g~~~~ 444 (675)
...+...|.+.+++.|++|+++++|++|+.++++|+||... +|+ ++.|+ .||+|+|....
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 35678889999999999999999999999888899998764 454 47786 59999886543
No 156
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.85 E-value=9.7e-08 Score=107.93 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeC-------CC-CEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLS-------DG-REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~-------~G-~~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+.++.|++|+.++ +++.||.+. ++ ..+.|+.||+|+|...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 5788899999999999999999999999875 688888763 22 2588999999999765
No 157
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.85 E-value=5.3e-07 Score=94.00 Aligned_cols=39 Identities=38% Similarity=0.583 Sum_probs=35.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGS 195 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~ 195 (675)
+.+|||||||++||++|..|.|+|++|+|||+...+-|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 458999999999999999999999999999998776543
No 158
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=9.9e-08 Score=108.73 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
...|...|.+.+++.|++|++++.|++++.+ +++|+||.. .+|+ .+.|+.||+|+|...
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3578889999888899999999999999985 789999875 3565 478999999999765
No 159
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.84 E-value=7e-08 Score=103.42 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC--CEEEcCEEEECCChh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VI~A~g~~ 442 (675)
.++.++|.+.++++|+++..+++|.++..+++++++|.+.++ .++.||+||+|+|+|
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 588899999999999999999999999999999998887776 479999999999998
No 160
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.84 E-value=3.5e-06 Score=95.86 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCc-EEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKGS-EILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv-~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.|.+.|.+.+ |. .++++++|++|..++++++ |++.+|+++.+|.||.|-|.+....+.+
T Consensus 195 ~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAV---GEDVIRNESNVVDFEDSGDKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 4555555544 33 4678999999998888776 8889998999999999999988765544
No 161
>PRK05868 hypothetical protein; Validated
Probab=98.84 E-value=5.6e-08 Score=104.90 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=44.5
Q ss_pred HcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 398 ~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
..|++++++++|++|..+++.++ |+++||+++++|.||-|-|.+..+++.+.
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 45899999999999987766664 88999999999999999999988877664
No 162
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.83 E-value=1.3e-07 Score=108.27 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
-..+.+.|.+.+.+.|++|+.++.+++++.+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 3578899999888899999999999999887 688999875 3564 578999999999764
No 163
>PRK12839 hypothetical protein; Provisional
Probab=98.83 E-value=1.1e-07 Score=107.94 Aligned_cols=59 Identities=17% Similarity=0.374 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeC--CCC-EEE-cCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLS--DGR-EFY-AKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~--~G~-~i~-ad~VI~A~g~~~~ 444 (675)
..++..|.+.+++.|++|+++++|++|+.+ +++|+||... +|+ ++. ++.||+|+|.+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 578889999999999999999999999875 6789998753 444 344 4899999997753
No 164
>PTZ00367 squalene epoxidase; Provisional
Probab=98.82 E-value=1.2e-06 Score=98.93 Aligned_cols=35 Identities=43% Similarity=0.736 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+||+|||||++|+++|+.|+++|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999975
No 165
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=1.5e-07 Score=108.09 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHc--------C-----cEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADK--------G-----SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~--------G-----v~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++. | ++|+.++.|++|+.+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 56888888888776 7 999999999999988888888764 3554 579999999999754
No 166
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=7.1e-08 Score=109.91 Aligned_cols=59 Identities=29% Similarity=0.378 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
...+.+.|.+.+++.|++|++++.|+++..+++++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 3578899999999999999999999999988888888763 4564 589999999999765
No 167
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.82 E-value=4.1e-09 Score=123.97 Aligned_cols=88 Identities=23% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCC-CCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEG-MSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~ 185 (675)
.||. .||..|+++.. ..++.|..+++++++........... .......+||+|||||+|||+||++|+++|++|+|
T Consensus 489 VC~h--~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV 565 (1012)
T TIGR03315 489 ICDH--QCQYKCTRLDY-DESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVTV 565 (1012)
T ss_pred cCCc--chHHHhcCCCC-CCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 7887 79999988764 47899999999987765433111111 11123568999999999999999999999999999
Q ss_pred EecCCCCCCcce
Q 005823 186 LEKYVIPGGSSG 197 (675)
Q Consensus 186 ~e~~~~~gg~~~ 197 (675)
+|+.+.+||..+
T Consensus 566 ~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 566 FEKKEKPGGVVK 577 (1012)
T ss_pred EecccccCceee
Confidence 999999999875
No 168
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.81 E-value=3e-08 Score=97.32 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.+.|.+.+++.|.+++++++|++|..+++++ .|++.+++++.||.||+|+|..
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w-~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDGW-TVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETTTE-EEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEeccEE-EEEEEecceeeeeeEEEeeecc
Confidence 344556677778888999999999999998874 5999999889999999999953
No 169
>PRK08275 putative oxidoreductase; Provisional
Probab=98.81 E-value=8.9e-08 Score=108.71 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|++++.|++|+.+ ++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 467888999999999999999999999987 778888864 3565 478999999999754
No 170
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=1.4e-07 Score=107.67 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC----CeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~----~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+.++.|++|+.++ +++.||.. .+|+ .+.|+.||+|+|...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 5788899999999999999999999999875 78888865 3554 578999999999765
No 171
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.81 E-value=1e-07 Score=106.57 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEeCC-C--CEEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSD-G--REFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~~~-G--~~i~ad~VI~A~g~~~~ 444 (675)
..+.+.|.+.+++ .|++|++++.|++|+.++++++||.+.+ + ..+.++.||+|+|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 4788889999987 6999999999999998888888887654 3 36899999999998763
No 172
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.81 E-value=4.7e-09 Score=116.78 Aligned_cols=88 Identities=20% Similarity=0.071 Sum_probs=71.9
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||.+ ||..|+++. ...++.|..+++++.+.........+..+.....+||+|||+|++||++|.+|++.|++|+|+
T Consensus 96 vC~~~--Ce~~C~~~~-~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vi 172 (471)
T PRK12810 96 VCPAP--CEGACTLNI-NFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVF 172 (471)
T ss_pred cCCch--hHHhccCCC-CCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 79988 999999886 458899999999998766544431222233445689999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||...
T Consensus 173 e~~~~~GG~l~ 183 (471)
T PRK12810 173 ERADRIGGLLR 183 (471)
T ss_pred ecCCCCCceee
Confidence 99999998654
No 173
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=2.8e-07 Score=105.16 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+.+.|++++.++.|++++.+ ++++.||.. .+|+ .+.|+.||+|+|-..
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 568888999888999999999999999986 578999875 2454 578999999999765
No 174
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.79 E-value=2e-07 Score=103.63 Aligned_cols=57 Identities=23% Similarity=0.277 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
..+.+.|.+.+++.|++++.+ .|+.+..+++++++|.. +|+.+.++.||+|+|.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 478899999999999999876 79999888888888887 5667999999999998764
No 175
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.79 E-value=1.5e-07 Score=106.27 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHc-CcEEEecceeeEEEEeC--CeEEEEEeC-CCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQ--GKAVGVRLS-DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~--~~v~gV~~~-~G~--~i~ad~VI~A~g~~~ 443 (675)
...+.+.|.+.++++ |++|++++.|++++.++ ++++||... +|+ .+.|+.||+|+|...
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 357888898888765 99999999999999863 788888653 454 378999999999753
No 176
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.79 E-value=2.9e-07 Score=90.74 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeC---C-CCEEEcCEEEECCChhhHHhhccC
Q 005823 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLS---D-GREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 386 ~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~---~-G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+.+++.+.+.+++.| |++.++. |++|..+..++.+|-.+ + +.....+++|+++|||.- +|++
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~Gk-v~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs--kllp 213 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFGK-VKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS--KLLP 213 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEee-eEEeecccccccccchhhhcCceEEeeeeEEEEecCCCch--hhcc
Confidence 377888888888876 8999887 88997666777766554 2 335677899999999984 5555
No 177
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=2.2e-07 Score=105.32 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCe-EEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~-v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|++++.|+++..++++ ++||.. .+|+ .+.|+.||+|+|...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 568888988888899999999999999987664 888764 4564 588999999999764
No 178
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.79 E-value=1.3e-07 Score=104.32 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=52.9
Q ss_pred ccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEe--CCeEEEEEeCC-CCEEEcCEEEECCChh
Q 005823 380 YPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSD-GREFYAKTIISNATRW 442 (675)
Q Consensus 380 ~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~~~-G~~i~ad~VI~A~g~~ 442 (675)
++.++...+.+.|.+.+++.|++|+++++|++|+.+ ++++++|...+ +.++.++.||+|+|..
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 445666789999999999999999999999999886 57788887644 3579999999999955
No 179
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.78 E-value=1.1e-08 Score=119.99 Aligned_cols=88 Identities=22% Similarity=0.061 Sum_probs=69.4
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCC-CCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMS-RGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~ 185 (675)
.||. .||..|+++.. ..++.|..+++++++............+ ......+|+|||||+|||+||++|+++|++|+|
T Consensus 491 VCph--~Ce~~C~R~~~-d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV 567 (1019)
T PRK09853 491 ICDH--QCQYNCTRLDY-DEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVTV 567 (1019)
T ss_pred cCCc--hhHHHhcCCCC-CCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 7887 79999988864 4789999999988776443221111111 134578999999999999999999999999999
Q ss_pred EecCCCCCCcce
Q 005823 186 LEKYVIPGGSSG 197 (675)
Q Consensus 186 ~e~~~~~gg~~~ 197 (675)
+|+.+.+||..+
T Consensus 568 ~Ek~~~~GG~lr 579 (1019)
T PRK09853 568 FEREENAGGVVK 579 (1019)
T ss_pred EecccccCccee
Confidence 999999999875
No 180
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.78 E-value=9.6e-08 Score=109.93 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
....+...|.+.+++.|++|+.++.|++|+.+++++.||... +|+ .+.|+.||+|+|.+.
T Consensus 156 tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 156 TGHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 345677788888999999999999999999988999888753 565 467999999999765
No 181
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.78 E-value=1.2e-07 Score=103.05 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CCC--EEEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+...|.+.+.+.|++++++++++++...++....|++. +|+ ++++|.||-|-|....+.+.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 444557777777899999999988886533222357775 775 68999999999999888777654
No 182
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=2.4e-07 Score=105.70 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+.+ .|++++.++.|++++.++++++||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4688888888876 58999999999999988888888764 3564 578999999999764
No 183
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.77 E-value=1.4e-07 Score=102.61 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEE-eCCeEEEEEe-CCCC--EEEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~-~~~~v~gV~~-~~G~--~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+.+.|.+.+.+.|++++++++|++|.. +++.+ .|++ .+|+ ++++|.||-|-|....+.+.++.
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~ 171 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPA 171 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCc
Confidence 3445566666778999999999999976 34433 4666 4674 68999999999998887777653
No 184
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.76 E-value=2.8e-08 Score=110.59 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++++++++|++|..+++.+. +++.+|+++.+|.||+|+|...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 56778899999999999999999999987666554 6677888999999999999654
No 185
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.76 E-value=2.2e-07 Score=113.69 Aligned_cols=43 Identities=40% Similarity=0.527 Sum_probs=39.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+||||||+|.|||+||+.+++.|.+|+|+||....||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4568999999999999999999999999999999999998653
No 186
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.76 E-value=7.1e-08 Score=104.62 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VI~A~g~~~ 443 (675)
.++.+.|.+.+++.|++++++++|+++..++++++.|...+|+ ++.+|.||+|+|...
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 3789999999999999999999999999888888776665554 589999999999753
No 187
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.75 E-value=3e-07 Score=103.17 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC--CC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--GR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~--G~--~i~ad~VI~A~g~~~ 443 (675)
..+.++|.+.++ .|++|+.++.|++|..+++++.||...+ |+ .+.|+.||+|+|.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 467888888776 6999999999999998888898887643 33 578999999999765
No 188
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=1.6e-07 Score=98.06 Aligned_cols=50 Identities=30% Similarity=0.422 Sum_probs=40.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|+++++ ++|++|..+++.+. |++.+|+++.+|.||+|+|...
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~-v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFK-VKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCeeE-EEeCCCCEEEeCEEEECCCCCc
Confidence 45556777999999 88999988766543 7778888999999999999754
No 189
>PLN02815 L-aspartate oxidase
Probab=98.73 E-value=2.4e-07 Score=105.20 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEecceeeEEEEe-CC---eEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADK-GSEILYKANVTKVILE-QG---KAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~-~~---~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+++. |++|+.++.+++++.+ ++ +|+||.. .+|+ .+.|+.||+|+|-..
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46888888888775 8999999999999985 33 3788875 3454 468999999999664
No 190
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.72 E-value=3.7e-07 Score=99.69 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEe---CCCCEEEcCEEEECCChhhHHhhccC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+. |++++++++|+++..++++++ |++ .+++++.+|.||-|-|.+...++.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 5666677777664 799999999999988776654 444 34457999999999999988877764
No 191
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.72 E-value=3.1e-07 Score=103.20 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCC-CC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~-G~--~i~ad~VI~A~g~~~ 443 (675)
...+.+.|.+.++++ |++|+.++.|++|..++++++||...+ ++ .+.|+.||+|+|...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 357889999988875 899999999999988888899987643 33 588999999999754
No 192
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.7e-06 Score=88.02 Aligned_cols=247 Identities=19% Similarity=0.266 Sum_probs=136.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCC---------------------eEEcccccccc
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDG---------------------YTFDVGSSVMF 214 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g---------------------~~~d~G~~~~~ 214 (675)
.+|||+|+|.|+.-...+..|+..|.+|+.+||++..||-..|..... +-+|.-+-.++
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 459999999999999999999999999999999999999888755210 11222233222
Q ss_pred CCCCCCchHHHHHHHHHcCCc--eeEeeCCCeEEEEcCCCeEEEEcCCHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 005823 215 GFSDKGNLNLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHREYSD-FVAELTSKFPHEKEGVLAFYGECWKIFN 291 (675)
Q Consensus 215 g~~~~~~~~~~~~ll~~lGl~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 291 (675)
. ...+.++|-+.|+. +++.. ....+.+..|+...++.+..+ +...+...| ++..+.+|+........
T Consensus 83 A------n~~Lvk~Li~T~V~~YL~fk~--i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~--eKrr~~kFl~~V~n~~e 152 (440)
T KOG1439|consen 83 A------NGELVKILIHTGVTRYLEFKS--ISGSFVYKKGKIYKVPATEAEALTSPLMGLF--EKRRVMKFLKFVLNYDE 152 (440)
T ss_pred c------cchHHHHHHHhchhhheEEEe--ecceEEEECCeEEECCCCHHHHhcCCccchh--HHHHHHHHHHHHhhhhh
Confidence 1 11233445555542 11222 122334455566666654332 222222222 34444445443322111
Q ss_pred HhhhhhhhccchhhHHHhhhhcChhhhhHHhhhc--cccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHH-
Q 005823 292 ALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYL--PQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASM- 368 (675)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~- 368 (675)
.-. ..+..+. ..++.++..+++.......+.......+-.......|...+..
T Consensus 153 ~~~------------------------~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~r 208 (440)
T KOG1439|consen 153 EDP------------------------KTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLER 208 (440)
T ss_pred hcc------------------------ccccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHH
Confidence 100 0001111 1255666666665554443332211111111223333322211
Q ss_pred --HHH----HhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEE-eCCeEEEEEeCCCCEEEcCEEEE
Q 005823 369 --VLC----DRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGREFYAKTIIS 437 (675)
Q Consensus 369 --~~~----~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~-~~~~v~gV~~~~G~~i~ad~VI~ 437 (675)
.+. ........||..|.++|++.+++...-.|++..+|.++.+|+. +++++.+|+..+ +...++.||.
T Consensus 209 i~~Y~~S~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~-~v~~~k~vi~ 283 (440)
T KOG1439|consen 209 ILLYVRSFARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGG-EVAKCKKVIC 283 (440)
T ss_pred HHHHHHHHhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCC-ceeecceEEe
Confidence 111 1111225789999999999999999889999999999999998 677777776443 3456676664
No 193
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.71 E-value=1.4e-07 Score=104.03 Aligned_cols=43 Identities=37% Similarity=0.490 Sum_probs=39.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...++|+|||||++||+||.+|.+.|++|+|||+++.+||...
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 3468999999999999999999999999999999999998554
No 194
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.71 E-value=1.4e-08 Score=111.49 Aligned_cols=58 Identities=31% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---CCEEEcCEEEECCChhhHHhhccC
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
|.+.+++.|++|++++.|.++..+++++++|++.+ ..++.|+.||-|+|-..+ ..+.+
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l-~~~aG 156 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDL-AALAG 156 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 34445677999999999999999999999998865 357999999999995443 34444
No 195
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.71 E-value=1.3e-08 Score=117.80 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=63.0
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhh-----------hcCCC----CCCCCCCCCccEEEECCChhHHH
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLV-----------EIGGN----EGMSRGADDYDAIVIGSGIGGLV 171 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~iig~g~~g~~ 171 (675)
.|| .||..|+++ +..|+.|..+|+++.+.... ..+.. ...+...+.++|+|||||||||+
T Consensus 323 VCp---~CE~aC~r~--~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAGLs 397 (1028)
T PRK06567 323 ICN---DCSKACIYQ--KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAGFS 397 (1028)
T ss_pred cCc---chHHHhcCC--CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHHHH
Confidence 688 499999988 45899999999988774210 01111 01123356789999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCC
Q 005823 172 AATQLAVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 172 ~a~~l~~~g~~v~~~e~~~~~gg 194 (675)
||++|+++||+|+|+|+.+..|+
T Consensus 398 AA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 398 LSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred HHHHHHhCCCeEEEEcccccccc
Confidence 99999999999999999765444
No 196
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.69 E-value=2.4e-08 Score=111.28 Aligned_cols=89 Identities=21% Similarity=0.088 Sum_probs=70.0
Q ss_pred CCCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 005823 106 SNFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (675)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~ 185 (675)
-.||+ .|+..|+++.. ..++.|..+++++.+............+.....++|+|||+|++|+++|.+|+++|++|+|
T Consensus 95 rvC~~--~Ce~~C~~~~~-~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v 171 (485)
T TIGR01317 95 RVCPA--PCEGACTLGIS-EDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTV 171 (485)
T ss_pred CcCCh--hhHHhccCCCC-CCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 37997 69999988865 3688999999988665444333232222233457999999999999999999999999999
Q ss_pred EecCCCCCCcce
Q 005823 186 LEKYVIPGGSSG 197 (675)
Q Consensus 186 ~e~~~~~gg~~~ 197 (675)
+|+.+.+||...
T Consensus 172 ~e~~~~~gG~l~ 183 (485)
T TIGR01317 172 FEREDRCGGLLM 183 (485)
T ss_pred EecCCCCCceee
Confidence 999999998665
No 197
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=5.9e-07 Score=102.52 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcC----cEEEecceeeEEEEe-CCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKG----SEILYKANVTKVILE-QGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~G----v~v~~~~~V~~I~~~-~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
..|...|.+.+++.+ ++++.++.+++++.+ +++|+||... +|+ .+.|+.||+|+|-..
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 467788887776654 789999999999985 6889998864 344 478999999999765
No 198
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.69 E-value=1.6e-07 Score=102.96 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+.+.|.+.+. ++.++++++|++|..+++++ .|++++|+++.+|.||.|.|.+..+++.+
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEV-QVLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcE-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 45566666653 35689999999998877765 48888999999999999999998776655
No 199
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.69 E-value=1.6e-06 Score=93.11 Aligned_cols=69 Identities=29% Similarity=0.443 Sum_probs=51.1
Q ss_pred ccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCCcceeEe--eCCeEEccccccccCCCCCCchHHHHHHHHH
Q 005823 158 YDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQALAA 231 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~ 231 (675)
.++-|||+|+|+|+||.+|.|. |-+|+|||+.+.+||...+.. ..||..-.|...- ..+..++++++.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~------~~~eclwdLls~ 76 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMME------FHYECLWDLLSS 76 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcccc------chhHHHHHHHHh
Confidence 5788999999999999999996 568999999999999876544 3465554443221 144567777665
Q ss_pred c
Q 005823 232 V 232 (675)
Q Consensus 232 l 232 (675)
+
T Consensus 77 I 77 (500)
T PF06100_consen 77 I 77 (500)
T ss_pred C
Confidence 4
No 200
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.68 E-value=4e-07 Score=103.71 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..|.+.|.+.+.+. |++++.++.|++++.+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 46778888877775 7999999999999998899888754 4664 688999999999765
No 201
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.68 E-value=5.4e-07 Score=102.47 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
-..|.+.|.+.+.+. |++++.++.|++++.+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 357888898888764 7999999999999998899998764 4664 578999999999765
No 202
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.68 E-value=3.9e-07 Score=104.11 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHH----cCcEEEecceeeEEEEe-CCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLAD----KGSEILYKANVTKVILE-QGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~----~Gv~v~~~~~V~~I~~~-~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+++ .|++|+++++|++|+.+ +++|+||... +|+ .+.|+.||+|+|-..
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3565666655544 38999999999999985 4589998864 454 578999999999754
No 203
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.66 E-value=5.1e-07 Score=100.58 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=35.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (675)
|||+|||+|++|+++|+.|+++|++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999999886
No 204
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.63 E-value=3.4e-08 Score=109.63 Aligned_cols=89 Identities=20% Similarity=0.053 Sum_probs=69.9
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||.+.+|+..|+++.. ..++.|..++.++.+.........+ .......++|+|||||++||++|..|+++|++|+|+
T Consensus 92 vc~~~~~C~~~C~~~~~-~~~v~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 92 VCPQERLCEGACVRGKK-GEPVAIGRLERYITDWAMETGWVLF-KRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred cCCCccCHHHHhcCCCC-CCCcchHHHHHHHHHHHHhcCCCCC-CCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999988754 4577888888777665443333211 122345689999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||...
T Consensus 170 e~~~~~gG~l~ 180 (457)
T PRK11749 170 EARDKAGGLLR 180 (457)
T ss_pred ccCCCCCcEee
Confidence 99999988653
No 205
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.62 E-value=1.9e-06 Score=97.44 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEecceeeEEEEeC------CeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADK-GSEILYKANVTKVILEQ------GKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~------~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+.++ |++|+.++.|++++.++ ++++||... +|+ .+.++.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 46778888888765 89999999999998764 789998753 454 578999999999765
No 206
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.62 E-value=4.7e-07 Score=102.03 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+.+++.|++++++++|++|..+++.. .|++.+|+++.+|.||+|+|...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~-~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAAGLI-EVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecCCeE-EEEECCCCEEEcCEEEECCCCCc
Confidence 33446666778899999999999998876544 47788888899999999999743
No 207
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.62 E-value=6.1e-07 Score=100.10 Aligned_cols=42 Identities=38% Similarity=0.599 Sum_probs=38.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...|||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 35799999999999999999999999999999996 6788765
No 208
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.61 E-value=6.1e-07 Score=99.34 Aligned_cols=40 Identities=45% Similarity=0.645 Sum_probs=36.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+|||+|||||++|++||.++++.|++|+|+|+. .+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence 589999999999999999999999999999995 7888665
No 209
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.61 E-value=1.6e-06 Score=88.94 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCC--CCE--EEcCEEEECCChhhHHhhccCC
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSD--GRE--FYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~--G~~--i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
++++.|.+++... ++++..++ |+++..+++.++||++++ |++ ..|..-|+|-|...-+++-|.+
T Consensus 148 RFvq~lR~ka~slpNV~~eeGt-V~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~ 216 (509)
T KOG1298|consen 148 RFVQRLRKKAASLPNVRLEEGT-VKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCD 216 (509)
T ss_pred HHHHHHHHHHhcCCCeEEeeee-HHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcC
Confidence 7777888766544 67777666 999998999999999854 444 4566678888887766555544
No 210
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.4e-07 Score=94.15 Aligned_cols=53 Identities=26% Similarity=0.348 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+.++..|+++.. ..|.++...++ ...|++.+|+ ++++.||+|+|...
T Consensus 63 L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 63 LMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEECCCe-EEEeEEEECcCCcc
Confidence 344456666667888887 66888876654 5568888887 99999999999765
No 211
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.60 E-value=5.1e-07 Score=101.68 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+++.|++++++++|++|..+++.. .|++.+|+++.+|.||+|+|...
T Consensus 271 ~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~-~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 271 ANLEEHIKQYPIDLMENQRAKKIETEDGLI-VVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHhCCeEEcCCEEEEEEecCCeE-EEEECCCCEEEeCEEEECCCCCc
Confidence 345566677799999999999998766544 47788888899999999999753
No 212
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=8.4e-07 Score=98.81 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=39.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+.+|||+|||||++|++||.+|++.|++|+|+|+.+..||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 3469999999999999999999999999999999878888664
No 213
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.58 E-value=6.9e-07 Score=99.67 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADK-GSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+...|.+.+++. |++++. ..|+++..+ ++++.+|.+.+|.++.|+.||+|+|.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4556677788887 677765 468888776 7789999999999999999999999884
No 214
>PRK06116 glutathione reductase; Validated
Probab=98.58 E-value=7.2e-07 Score=98.94 Aligned_cols=41 Identities=44% Similarity=0.719 Sum_probs=37.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.+|||+|||||++|++||.+|+++|++|+|+|+. ..||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 4699999999999999999999999999999996 6788664
No 215
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.56 E-value=3.1e-06 Score=96.37 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeC---CeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQ---GKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~---~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
.+...+.+.+++.+++|+.++.|++++.++ ++++||.. .+|+ .+.|+.||+|+|.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 444556666777778999999999999865 68999865 3565 578999999999875
No 216
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.56 E-value=4.1e-07 Score=95.03 Aligned_cols=63 Identities=33% Similarity=0.403 Sum_probs=44.6
Q ss_pred HHHHH-HHHHHHHcCcEEEecceeeEEEEe--CCeEEEEEeCC--CC----EEEcCEEEECCChhhHHhhcc
Q 005823 387 GIAKS-LAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSD--GR----EFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~-L~~~l~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~~~--G~----~i~ad~VI~A~g~~~~~~~Ll 449 (675)
..... |...+...+.+|++++.|++|..+ ++++++|++.+ +. .+.++.||+|+|+..+-+-|+
T Consensus 193 s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl 264 (296)
T PF00732_consen 193 SAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLL 264 (296)
T ss_dssp HHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHH
T ss_pred ehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhc
Confidence 33344 444444448999999999999876 78899998743 33 467899999999887754444
No 217
>PLN02507 glutathione reductase
Probab=98.52 E-value=9.1e-07 Score=99.07 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|+++++++.|++|..+++++ .|++.+|+++.+|.||+++|...
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~-~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGI-KVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeE-EEEECCCcEEEcCEEEEeecCCC
Confidence 4677788888999999999999999998766654 36777888999999999999654
No 218
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.51 E-value=1.3e-06 Score=96.81 Aligned_cols=40 Identities=40% Similarity=0.676 Sum_probs=36.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+|||+|||||++|++||..|++.|++|+|+|+. ..||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 589999999999999999999999999999995 5788664
No 219
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.51 E-value=1e-07 Score=109.99 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=67.1
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||. .||..|.++.. ..++.|..+++++.+..................++|+|||+|++||++|+.|++.|++|+|+
T Consensus 146 vC~~--~Ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 146 ICPA--PCEEACRRHGV-DEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred CcCc--hhhHHHcCCCC-CCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 7998 69999987643 35778888888877644332221111122345689999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||...
T Consensus 223 e~~~~~GG~l~ 233 (652)
T PRK12814 223 DANEQAGGMMR 233 (652)
T ss_pred ecCCCCCceee
Confidence 99999999764
No 220
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.50 E-value=2e-07 Score=106.26 Aligned_cols=87 Identities=17% Similarity=0.054 Sum_probs=68.6
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||. .||..|+++.. ..++.+..+++.+.+.....+...+ ........+|+|||+|++||++|..|++.|++|+|+
T Consensus 91 vc~~--~ce~~C~r~~~-~~~v~i~~l~r~~~~~~~~~~~~~~-~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~ 166 (564)
T PRK12771 91 VCYH--PCESGCNRGQV-DDAVGINAVERFLGDYAIANGWKFP-APAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIF 166 (564)
T ss_pred cCCc--hhHHhccCCCC-CCCcCHHHHHHHHHHHHHHcCCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 6887 79999988754 4678888888877665544333322 222445789999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005823 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||..+
T Consensus 167 e~~~~~GG~l~ 177 (564)
T PRK12771 167 EAGPKLGGMMR 177 (564)
T ss_pred ecCCCCCCeee
Confidence 99999999654
No 221
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.50 E-value=2.8e-07 Score=94.26 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---C--CEEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VI~A~g~~~~ 444 (675)
.++..++.+.|+++|.+++++++|..+..++++.+.|++.+ | +++++|.+.+++|....
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 48889999999999999999999999998866433455533 3 37899999999996653
No 222
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.50 E-value=1.1e-06 Score=87.77 Aligned_cols=39 Identities=41% Similarity=0.596 Sum_probs=36.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.|||||+|+|||+|+..+...|-.|+++|+....||.+.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 599999999999999999999888999999999999664
No 223
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.50 E-value=1.4e-06 Score=95.21 Aligned_cols=59 Identities=31% Similarity=0.335 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC--EEEcCEEEECCChhhH
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VI~A~g~~~~ 444 (675)
-..+++.+.+.+++.|++++++++|+++...++. ..|++++|+ ++++|.|++|+|....
T Consensus 213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCCCEEEeeEEEEccCCccC
Confidence 3688999999999988999999999999887776 458888876 6899999999997643
No 224
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.8e-06 Score=86.83 Aligned_cols=56 Identities=11% Similarity=0.183 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCE--EEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE--FYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~--i~ad~VI~A~g~~ 442 (675)
++-+.|...+++.|+.+..+-+|......+++|+.|.+.++.. +.||.+|+|+|..
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSF 316 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeecccc
Confidence 6778899999999999999999999999999999999888764 6899999999854
No 225
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=3.6e-06 Score=93.70 Aligned_cols=41 Identities=46% Similarity=0.647 Sum_probs=37.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..|||+|||||++|++||..|++.|++|+|+|+.. .||.|.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 46999999999999999999999999999999987 888664
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.42 E-value=1.8e-06 Score=97.97 Aligned_cols=40 Identities=35% Similarity=0.461 Sum_probs=35.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcc
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 196 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~ 196 (675)
..|||+|||||+|||+||.+|+++|++|+|+|+. ..||.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 4699999999999999999999999999999996 566643
No 227
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.42 E-value=1.9e-07 Score=103.98 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|+++++++.|++|..+++....|++.+|+++.+|.||+|+|...
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 5788889999999999999999999998664444457777888899999999999654
No 228
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.41 E-value=5.2e-06 Score=99.44 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHc----CcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADK----GSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~----Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
..+...|.+.+.++ ++++..+..+.+++.+++++.||.. .+|+ .+.|+.||+|+|...
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 45666677666554 5777777777888888889998874 3565 478999999999754
No 229
>PRK09897 hypothetical protein; Provisional
Probab=98.39 E-value=6.8e-06 Score=91.82 Aligned_cols=54 Identities=6% Similarity=-0.021 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcC--cEEEecceeeEEEEeCCeEEEEEeCC-CCEEEcCEEEECCCh
Q 005823 387 GIAKSLAKGLADKG--SEILYKANVTKVILEQGKAVGVRLSD-GREFYAKTIISNATR 441 (675)
Q Consensus 387 ~l~~~L~~~l~~~G--v~v~~~~~V~~I~~~~~~v~gV~~~~-G~~i~ad~VI~A~g~ 441 (675)
...+.+.+.+++.| ++++.+++|++|..+++++. |.+.+ |..+.+|.||+|+|-
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEE-EEECCCCeEEEcCEEEECCCC
Confidence 44455667777777 78888999999988877754 77655 467999999999994
No 230
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.38 E-value=5.6e-06 Score=92.41 Aligned_cols=33 Identities=42% Similarity=0.704 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~ 188 (675)
..||++|||||++|++||.++++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 231
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.37 E-value=5.7e-06 Score=91.04 Aligned_cols=43 Identities=35% Similarity=0.463 Sum_probs=39.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCe-EEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~~~gg~~~ 197 (675)
...+||+|||||++||++|++|.++|.. ++||||++.+||.=+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~ 49 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWR 49 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcch
Confidence 4578999999999999999999999999 999999999998544
No 232
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.36 E-value=3.6e-06 Score=92.93 Aligned_cols=56 Identities=29% Similarity=0.457 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.|.+.++++|++++.++ |+++..+ ++.+++|++.+|+++.||.||=|+|...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 667778899999999999886 7777765 6678899999999999999999999755
No 233
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=7.6e-06 Score=83.70 Aligned_cols=245 Identities=19% Similarity=0.213 Sum_probs=126.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeC--------------------CeEEcccccccc
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD--------------------GYTFDVGSSVMF 214 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~--------------------g~~~d~G~~~~~ 214 (675)
...|||+|+|.|+.-...+..|+.+|.+|+.+|+++..|+...|.... .+-.|.-+-.++
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~ 83 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF 83 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc
Confidence 347999999999999999999999999999999999999988775421 122333333333
Q ss_pred CCCCCCchHHHHHHHHHcCCceeEeeCCCeEEEEcCCCeEEEEcCCHHH-HHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Q 005823 215 GFSDKGNLNLITQALAAVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSD-FVAELTSKFPHEKEGVLAFYGECWKIFNAL 293 (675)
Q Consensus 215 g~~~~~~~~~~~~ll~~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 293 (675)
. ..-+..+|.+.|+.--+.-......+.+.++....++.+..+ +...+...+ ++..+.+|+++........
T Consensus 84 A------~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~--eKr~vmrFl~~V~n~~~~~ 155 (434)
T COG5044 84 A------NSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLF--EKRRVMRFLKWVSNYAEQK 155 (434)
T ss_pred c------cchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchh--hHHHHHHHHHHHHhHHhhh
Confidence 1 112334455555421111111122233444555555544322 222122222 3445555554422211100
Q ss_pred hhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHH-HhCCCHHHHHHHhh-hhhhhccCCCCCchHHHHHH---
Q 005823 294 NSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIAR-KYIKDPQLLSFIDA-ECFIVSTINALQTPMINASM--- 368 (675)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~~~~p~~~~~~--- 368 (675)
...+.. +..+...+.+. .|........++.. .+..+ ....|+..+.-
T Consensus 156 --~~~~~~----------------------~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l----dl~~p~re~~erIl 207 (434)
T COG5044 156 --STLQEL----------------------YESKDTMEFLFEKFGLSGATEEFIGHGIALSL----DLDIPAREALERIL 207 (434)
T ss_pred --hhchhh----------------------hhcccHHHHHHHHHccCcchhhhhhhhhhhhc----cccCCchHHHHHHH
Confidence 000000 00011111111 11111111111111 01100 02222222110
Q ss_pred HHH-H---hhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEE
Q 005823 369 VLC-D---RHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIIS 437 (675)
Q Consensus 369 ~~~-~---~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~ 437 (675)
.++ . .-.....||+-|.++|++.+++...-.|+++.+|+++.+|...+. |.+|.. ++.+..|..||.
T Consensus 208 ~Y~~Sf~~yg~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~-v~~v~~-~~~~~ka~KiI~ 278 (434)
T COG5044 208 RYMRSFGDYGKSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD-VETVDK-GSLTQKAGKIIS 278 (434)
T ss_pred HHHHhhcccCCCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc-eeeeec-CcceeecCcccC
Confidence 000 0 001235688989999999999999889999999999999987665 344543 445788999885
No 234
>PRK13984 putative oxidoreductase; Provisional
Probab=98.33 E-value=5e-07 Score=103.96 Aligned_cols=88 Identities=23% Similarity=0.143 Sum_probs=67.6
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCC-CCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEE
Q 005823 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNE-GMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLV 185 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~ 185 (675)
.||+ .||..|+++.. ..++.|..+++++.+....+..... ......+..+|+|||+|++|+++|..|+++|++|+|
T Consensus 235 vC~~--~Ce~~C~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~v 311 (604)
T PRK13984 235 VCTH--KCETVCSIGHR-GEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTV 311 (604)
T ss_pred cCCc--hHHHhhcccCC-CCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 6887 69999988853 4678888888877766443322111 112234568999999999999999999999999999
Q ss_pred EecCCCCCCcce
Q 005823 186 LEKYVIPGGSSG 197 (675)
Q Consensus 186 ~e~~~~~gg~~~ 197 (675)
+|+.+.+||...
T Consensus 312 ie~~~~~gG~~~ 323 (604)
T PRK13984 312 YESLSKPGGVMR 323 (604)
T ss_pred EecCCCCCceEe
Confidence 999999998654
No 235
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.33 E-value=1.3e-05 Score=90.97 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=42.9
Q ss_pred HHHHHHHHH-HcCcEEEecceeeEEEEeCCeEEEEEeCCC-C---EEEcCEEEECCChhhHH
Q 005823 389 AKSLAKGLA-DKGSEILYKANVTKVILEQGKAVGVRLSDG-R---EFYAKTIISNATRWDTF 445 (675)
Q Consensus 389 ~~~L~~~l~-~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G-~---~i~ad~VI~A~g~~~~~ 445 (675)
...+...+. +.|.+|++++.|++|+.++++++||++.++ + .+.++.||+|+|+..+-
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP 257 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSP 257 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCH
Confidence 333333343 457999999999999999999999987543 2 25789999999986553
No 236
>PTZ00058 glutathione reductase; Provisional
Probab=98.32 E-value=1e-05 Score=91.36 Aligned_cols=42 Identities=43% Similarity=0.576 Sum_probs=38.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..+|||+|||||++|++||..+++.|.+|+|+|+. .+||.|-
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 35799999999999999999999999999999996 6888764
No 237
>PRK02106 choline dehydrogenase; Validated
Probab=98.30 E-value=1.2e-05 Score=91.68 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=40.8
Q ss_pred HcCcEEEecceeeEEEEeCCeEEEEEeCCC--C--EEEcCEEEECCChhhHHhhc
Q 005823 398 DKGSEILYKANVTKVILEQGKAVGVRLSDG--R--EFYAKTIISNATRWDTFGKL 448 (675)
Q Consensus 398 ~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G--~--~i~ad~VI~A~g~~~~~~~L 448 (675)
..+.+|++++.|++|+.++++++||++.+. + .+.++.||+|+|...+-+-|
T Consensus 213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LL 267 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLL 267 (560)
T ss_pred CCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHH
Confidence 456999999999999999889999997543 2 35789999999987664333
No 238
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.28 E-value=1.8e-05 Score=79.80 Aligned_cols=39 Identities=49% Similarity=0.707 Sum_probs=34.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC--CCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI--PGG 194 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~--~gg 194 (675)
..+||||||+|++||.||.+|+.+|.+|+|+|.... .||
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGG 44 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccc
Confidence 468999999999999999999999999999997644 455
No 239
>PLN02546 glutathione reductase
Probab=98.28 E-value=9.3e-06 Score=91.71 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~ 188 (675)
..+|||+|||+|++|+.||..+++.|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3469999999999999999999999999999996
No 240
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.26 E-value=1.1e-05 Score=75.69 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCcEEE-ecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCCh
Q 005823 390 KSLAKGLADKGSEIL-YKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~-~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~ 441 (675)
+.+.+.+ ..|++|. ...+|+.|...+++. .|.+.+|..+.+|+||+|+|-
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDDDGY-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcCCcE-EEEECCCCEEEeCEEEECCCC
Confidence 3344444 4566653 467899999887775 588899999999999999983
No 241
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.23 E-value=8.9e-06 Score=86.84 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHH-cCcEEEecceeeEEEEeCC-eEEEEEeCCC----CEEEcCEEEECCChh
Q 005823 386 GGIAKSLAKGLAD-KGSEILYKANVTKVILEQG-KAVGVRLSDG----REFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~-~v~gV~~~~G----~~i~ad~VI~A~g~~ 442 (675)
..+..+|.+.+++ .+++|+.++.+.+|..+++ .+.||.+.+. .++.++.||+|+|-.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 4788899999887 4899999999999999988 4558877432 368899999999954
No 242
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.22 E-value=2.4e-05 Score=83.39 Aligned_cols=69 Identities=25% Similarity=0.340 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeC---CC--CEEEcCEEEECCChhhHHhhccCCCCCC
Q 005823 385 VGGIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWDTFGKLLKGEQLP 455 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G--~~i~ad~VI~A~g~~~~~~~Ll~~~~lp 455 (675)
++.|++.|.+.+++. |++++++++|+.|...++.-+.|.+. +| .++.|+.|++.+|..++ .|+....+|
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqksgi~ 254 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQKSGIP 254 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH--HHHHHcCCh
Confidence 479999999999888 99999999999999876653446542 23 47999999999998764 344433344
No 243
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.19 E-value=3.1e-05 Score=86.19 Aligned_cols=39 Identities=38% Similarity=0.480 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.||+|||+|++|+.||..++++|.+|+|+|+.. .||.|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence 489999999999999999999999999999875 688664
No 244
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.18 E-value=5.6e-06 Score=92.42 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC---CEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|++++.+++|...++.+ .|++.+| +++.+|.||+|+|...
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKV-KVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEecCCcceEEEeCEEEEEecCCc
Confidence 4677788889999999999999999998665544 3666555 3799999999999654
No 245
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.18 E-value=1.9e-05 Score=88.78 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=38.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..++||||||||.|||.||..++.+|.+|+|+||....+|.+.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 4578999999999999999999999999999999998886443
No 246
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.17 E-value=3.4e-05 Score=63.44 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999998754
No 247
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.10 E-value=3.4e-05 Score=82.36 Aligned_cols=53 Identities=32% Similarity=0.407 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC-EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~-~i~ad~VI~A~g~~~ 443 (675)
.++.+...+.|+++|++|++++.|++|..+ +|++++|+ +|.++.||+|+|...
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD-----GVTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCC-----cEEEccCCeeEecCEEEEcCCCcC
Confidence 578888889999999999999999999543 46788888 499999999999653
No 248
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.08 E-value=8.5e-06 Score=87.10 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=39.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.++||+|||||..|.-||...+-+|.+|.++|+++...|.++
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 469999999999999999999999999999999999888665
No 249
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.07 E-value=7.8e-06 Score=92.21 Aligned_cols=37 Identities=41% Similarity=0.527 Sum_probs=34.4
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+..++|+||||+|.+|.+.|.+|+..|++|+|||++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4568999999999999999999999999999999974
No 250
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.04 E-value=4.4e-06 Score=93.01 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=38.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+|||+|||+|++|++||.+++++|++|+|+|+...+||.|.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 59999999999999999999999999999998778899764
No 251
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=7e-06 Score=90.74 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++++++++|++|..+++++. +. .+|+++.+|.||+|+|...
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~-v~-~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVL-VV-TEDETYRFDALLYATGRKP 253 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEE-EE-ECCeEEEcCEEEEeeCCCC
Confidence 45667777888999999999999999987665543 43 4567899999999999654
No 252
>PRK06370 mercuric reductase; Validated
Probab=97.96 E-value=8.6e-06 Score=90.71 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe--C-CCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--S-DGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~--~-~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++++++++|++|..+++.+ .|++ . +++++.+|.||+|+|...
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~Vi~A~G~~p 271 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGI-AVGLDCNGGAPEITGSHILVAVGRVP 271 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEECcCCCc
Confidence 4567788889999999999999999998765543 2333 2 345799999999999654
No 253
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.96 E-value=7.6e-06 Score=90.58 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++++++++|++|..+++++ .|.+.++ ++.+|.||+|+|...
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v-~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQV-QVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEEcCC-eEEeCEEEEeecCCc
Confidence 5677888899999999999999999998766654 3555555 589999999999654
No 254
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.95 E-value=7.5e-05 Score=84.32 Aligned_cols=69 Identities=25% Similarity=0.428 Sum_probs=55.7
Q ss_pred CcccccCCC--HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhhH
Q 005823 376 GGINYPVGG--VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG--~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~~ 444 (675)
++++++.|- ...++.++++.++++|++|+++++|++|..+++++++|++. +|+ ++.|+.||+|+|+|..
T Consensus 116 ga~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 116 GAVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred EEEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 345555321 25888999999999999999999999999988888888763 343 6899999999999963
No 255
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.93 E-value=9.7e-06 Score=90.29 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC--CEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++++++++|++|..+++++. +++.+| +++.+|.||+|+|...
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 56778888999999999999999999988777665 666667 4799999999999654
No 256
>PRK14694 putative mercuric reductase; Provisional
Probab=97.91 E-value=1.2e-05 Score=89.67 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|+++++++.|++|..+++.+ .+.+.++ ++.+|.||+|+|...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~-~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREF-ILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEECCC-EEEeCEEEEccCCCC
Confidence 5778889999999999999999999998766544 3555544 699999999999654
No 257
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.90 E-value=1.3e-05 Score=89.31 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC--CCC--EEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..+++.+. |++. +|+ ++.+|.||+|+|...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVT-VTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEE-EEEEecCCCeEEEEeCEEEECcCccc
Confidence 56778889999999999999999999986655443 4443 663 699999999999654
No 258
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.90 E-value=1.5e-05 Score=88.05 Aligned_cols=42 Identities=33% Similarity=0.498 Sum_probs=38.8
Q ss_pred CCccEEEECCChhHHHHHHHHHH--cCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAV--KGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~--~g~~v~~~e~~~~~gg~~~ 197 (675)
...+|+|||||||||+||..|++ .|++|+|||+.+.+||..+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 45789999999999999999997 7999999999999999776
No 259
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=1.8e-05 Score=85.27 Aligned_cols=52 Identities=29% Similarity=0.555 Sum_probs=39.1
Q ss_pred HHHHHHHHHc-CcEEEecceeeEEEEeCC-eEEEEEeCCCCEEEcCEEEECCChh
Q 005823 390 KSLAKGLADK-GSEILYKANVTKVILEQG-KAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 390 ~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~-~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
..+.+.++.. +..++.++ |++++++++ +|+||.+.+|..+.|+.||+++|-.
T Consensus 104 ~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 104 RAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 3344555443 45665544 888888766 6999999999999999999999954
No 260
>PLN02785 Protein HOTHEAD
Probab=97.87 E-value=0.00018 Score=81.81 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=32.8
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...||+||||+|.+|+.+|.+|++ +.+|+|||++..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 446999999999999999999999 689999999864
No 261
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.86 E-value=7e-05 Score=88.30 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
..|.+.|.+.+++.|++|+++++|+++.. ....+|.||.|.|.+..++..+.
T Consensus 97 ~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~~~~~D~VVgADG~~S~vR~~~~ 148 (765)
T PRK08255 97 KRLLNILQARCEELGVKLVFETEVPDDQA-------------LAADADLVIASDGLNSRIRTRYA 148 (765)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCccCchhh-------------hhcCCCEEEEcCCCCHHHHHHHH
Confidence 47788899999999999999999877631 01478999999998887766543
No 262
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=1.5e-05 Score=88.70 Aligned_cols=41 Identities=44% Similarity=0.631 Sum_probs=37.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..|||+|||||++|++||.+|++.|++|+|+|+ ...||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 359999999999999999999999999999999 67788654
No 263
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.85 E-value=1.6e-05 Score=86.57 Aligned_cols=42 Identities=38% Similarity=0.450 Sum_probs=38.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+|+|||||++||++|..|.+.|++|+|+||.+.+||.-.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 457999999999999999999999999999999999999544
No 264
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.81 E-value=2e-05 Score=87.88 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++++++++|++|..+++.. .|++. +++++.+|.||+|+|...
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~-~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGK-IITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEE-EEEEEeCCCceEEEeCEEEEeECCCc
Confidence 4677788888999999999999999998765543 34443 235799999999999554
No 265
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.81 E-value=0.00016 Score=74.23 Aligned_cols=71 Identities=25% Similarity=0.450 Sum_probs=49.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCCcceeEe--eCCeEEccccccccCCCCCCchHHHHHHH
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQAL 229 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~t~~--~~g~~~d~G~~~~~g~~~~~~~~~~~~ll 229 (675)
....+-|||+|+|||++|.+|.|. |.++.|+|..+..||..-... ..|+..-.| ..+ .+....+++++
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGG-Rem-----EnhfEc~WDlf 94 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGG-REM-----ENHFECLWDLF 94 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCc-HHH-----HHHHHHHHHHH
Confidence 346789999999999999999996 668999999999999665322 235444333 222 12445666666
Q ss_pred HHc
Q 005823 230 AAV 232 (675)
Q Consensus 230 ~~l 232 (675)
+.+
T Consensus 95 rsI 97 (587)
T COG4716 95 RSI 97 (587)
T ss_pred hcC
Confidence 553
No 266
>PRK14727 putative mercuric reductase; Provisional
Probab=97.79 E-value=2.7e-05 Score=87.06 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
..+.+.+.+.+++.|++++++++|++|..+++.+. |.+.++ ++.+|.||+|+|....
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~-v~~~~g-~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFV-LTTGHG-ELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEE-EEEcCC-eEEeCEEEEccCCCCC
Confidence 46778888999999999999999999987666543 556555 5899999999997653
No 267
>PRK13748 putative mercuric reductase; Provisional
Probab=97.76 E-value=2.6e-05 Score=89.07 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|++++.|++|..+++.+. +.+.++ ++.+|.||+|+|...
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~-v~~~~~-~i~~D~vi~a~G~~p 365 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFV-LTTGHG-ELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEE-EEecCC-eEEeCEEEEccCCCc
Confidence 56778888999999999999999999987666543 655555 699999999999654
No 268
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.75 E-value=0.00017 Score=79.84 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=35.5
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEe-CCCCEEE--cCEEEECCChhh
Q 005823 396 LADKGSEILYKANVTKVILEQGKAVGVRL-SDGREFY--AKTIISNATRWD 443 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~-~~G~~i~--ad~VI~A~g~~~ 443 (675)
+++.|+++++++.|++|..+++.+. ++. .+|+++. +|++|+|+|...
T Consensus 66 ~~~~gv~~~~~~~V~~id~~~~~v~-~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 66 FIKSGIDVKTEHEVVKVDAKNKTIT-VKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHCCCeEEecCEEEEEECCCCEEE-EEECCCCCEEEecCCEEEECCCCCC
Confidence 4567899999999999988776543 332 2366666 999999999754
No 269
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.74 E-value=3.1e-05 Score=86.82 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|+++++++.|++|...++.+ .|++.+|+++.+|.||+++|...
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~-~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKI-KVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeE-EEEECCCCEEEcCEEEEeeCCCC
Confidence 4577888899999999999999999998655544 47778888899999999999654
No 270
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.73 E-value=4.1e-05 Score=83.53 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=37.8
Q ss_pred CCccEEEECCChhHHHHHHHHH-HcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~-~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+|+|||||||||.||.+|+ +.|++|+|||+.+.+||..+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR 80 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIR 80 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEE
Confidence 4568999999999999999765 67999999999999999887
No 271
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.72 E-value=3.4e-05 Score=81.68 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=39.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCccee
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGY 198 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t 198 (675)
...+++|||||++|++||..|++.|++|.++||.+..||+...
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 3568999999999999999999999999999999999998763
No 272
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.72 E-value=0.00042 Score=75.53 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=40.1
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|++|.. ++.+ .|++.+|+++.+|.||+++|...
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-GEKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-CCEE-EEEECCCCEEECCEEEECCCCCh
Confidence 34556778999999999999975 4443 47888999999999999999653
No 273
>PRK10262 thioredoxin reductase; Provisional
Probab=97.69 E-value=4.8e-05 Score=80.45 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=36.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++||+||.+|+++|++|+++|+. ..||.+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 4689999999999999999999999999999965 5677543
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.68 E-value=0.00054 Score=74.16 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=41.4
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++++++++|++|..+++.+ .|++.+|+++.+|.||+|+|...
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSGI-RATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCEE-EEEEcCCcEEECCEEEECcCCCc
Confidence 3455677899999999999998765554 47888999999999999999643
No 275
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.66 E-value=0.00011 Score=84.27 Aligned_cols=43 Identities=30% Similarity=0.555 Sum_probs=38.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecC-CCCCCcce
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY-VIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~-~~~gg~~~ 197 (675)
..+|||+|||+|++|..||..+++.|.+|+|+|+. ...||.|-
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 44799999999999999999999999999999975 36788764
No 276
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.65 E-value=0.00096 Score=67.19 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCe----EEEEEeCCCCEEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGK----AVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~----v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++.+...+.+.++..|+++.+|-+|..|...+.. .+.|.-..|++++...||-+++...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 3577888889999999999999999999765432 1113323467899999999888654
No 277
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.60 E-value=0.00046 Score=75.97 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCCh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~ 441 (675)
..+.+.+.+.++++|++|+++++|++|. ++ .|++++|+++.+|.||+++|.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~~---~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVL--DK---EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEe--CC---EEEECCCCEEEccEEEEccCC
Confidence 4677888899999999999999999985 33 366889999999999999884
No 278
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.58 E-value=0.00089 Score=74.58 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 5899999999999999999999999999998764
No 279
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0052 Score=61.74 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhc
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYV 466 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~ 466 (675)
.+..-|.+.+.++|+++.. .+|+++.. +.+ -.+|.||.|+|.+. ..|.+++++-+
T Consensus 152 ~ylpyl~k~l~e~Gvef~~-r~v~~l~E---------~~~---~~~DVivNCtGL~a--~~L~gDd~~yP---------- 206 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFVQ-RRVESLEE---------VAR---PEYDVIVNCTGLGA--GKLAGDDDLYP---------- 206 (342)
T ss_pred hhhHHHHHHHHhcCcEEEE-eeeccHHH---------hcc---CCCcEEEECCcccc--ccccCCcceee----------
Confidence 4556688999999999865 34666531 111 35899999999886 56666543211
Q ss_pred cCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhh
Q 005823 467 KAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKD 546 (675)
Q Consensus 467 ~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~ 546 (675)
.. -+.+.++.+. ..++.+.| .. + .| .+ +|.+.|++-...-..+|.....
T Consensus 207 -iR---GqVl~V~ApW------vkhf~~~D-~~---~----ty-~i----------P~~~~V~lGg~~Q~g~w~~ei~-- 255 (342)
T KOG3923|consen 207 -IR---GQVLKVDAPW------VKHFIYRD-FS---R----TY-II----------PGTESVTLGGTKQEGNWNLEIT-- 255 (342)
T ss_pred -cc---ceEEEeeCCc------eeEEEEec-CC---c----cE-Ee----------cCCceEEEccccccCcccCcCC--
Confidence 11 1223444432 12333321 10 0 01 11 2444443322222235542211
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcCc-eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCC-CCCcEEEeC
Q 005823 547 YDAKKELVADEIINRLENKLFPGLKQS-IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTT-GINGLYCVG 624 (675)
Q Consensus 547 ~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t-~i~gLylaG 624 (675)
++=...|+++-. ++.|.|+.. |+..+ .|.-|...+ ..--++.++ .=..+-.+-
T Consensus 256 -----~~D~~dIl~rc~-aL~P~l~~a~ii~E~-----------------vGlRP~Rk~--vRlE~e~~~~~~k~~~VVH 310 (342)
T KOG3923|consen 256 -----DEDRRDILERCC-ALEPSLRHAEIIREW-----------------VGLRPGRKQ--VRLEAELRTRGGKRLTVVH 310 (342)
T ss_pred -----hhhHHHHHHHHH-HhCcccccceehhhh-----------------hcccCCCCc--eeeeeeeecCCCccceeEe
Confidence 111233455555 788999863 33222 122333221 100111122 224555577
Q ss_pred CCccCCCChhHHhhhHHHHHHHHHHHhCC
Q 005823 625 DSCFPGQGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 625 ~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
+|.|.|.|+.-+.-++.-||+.++..++.
T Consensus 311 nYGHgG~G~Tl~wGtAlea~~Lv~~~l~~ 339 (342)
T KOG3923|consen 311 NYGHGGNGFTLGWGTALEAAKLVLDALGA 339 (342)
T ss_pred eccCCCCceecccchHHHHHHHHHHHhhh
Confidence 88888888887777888888888776543
No 280
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.54 E-value=9.2e-05 Score=79.58 Aligned_cols=35 Identities=37% Similarity=0.409 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.||+|||||++|+.||+.|+++|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987654
No 281
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.54 E-value=9.5e-05 Score=89.54 Aligned_cols=42 Identities=38% Similarity=0.549 Sum_probs=39.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||+|||+||.+|++.|++|+|+|+.+.+||...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 468999999999999999999999999999999999999664
No 282
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.52 E-value=9.6e-05 Score=79.61 Aligned_cols=37 Identities=32% Similarity=0.516 Sum_probs=34.1
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCCc
Q 005823 159 DAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGS 195 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~ 195 (675)
||+|||||++||++|+.|++. |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999877663
No 283
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.51 E-value=9.5e-05 Score=83.03 Aligned_cols=40 Identities=38% Similarity=0.394 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.+|+|||||++||++|..|.+.|++|++|||.+.+||.=+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 5799999999999999999999999999999999999543
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=0.0011 Score=73.89 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC---CEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|++|..+++.+. |++.+| +++.+|.||+|+|...
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTDDGVT-VTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 34456778999999999999987766553 666665 6799999999999654
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.50 E-value=0.00075 Score=73.62 Aligned_cols=51 Identities=29% Similarity=0.229 Sum_probs=41.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEE--EEeCCCCEEEcCEEEECCChh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVG--VRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~g--V~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.++++|+++++++.|.+|....+..+. +...++.++.+|.++++.+..
T Consensus 184 ~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 184 LAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred HHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 456678889999999999999987765544 567788899999999988744
No 286
>PRK06116 glutathione reductase; Validated
Probab=97.47 E-value=0.0016 Score=72.41 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=41.2
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|++|..+++....|++.+|+++.+|.||+|+|...
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 3455677899999999999998765442347788898999999999999653
No 287
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.45 E-value=0.00014 Score=70.95 Aligned_cols=32 Identities=50% Similarity=0.762 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
||+|||||++|++||.+|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998765
No 288
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.43 E-value=0.0015 Score=73.01 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHHcCcEEEecceeeEEEE-eCCeEEEEEeCCCC--EEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~-~~~~v~gV~~~~G~--~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|+++++++.|++|.. .++++..+.+.+|+ ++.+|.||+|+|...
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 34556778999999999999975 24445445566774 689999999999654
No 289
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.43 E-value=0.0016 Score=72.33 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=40.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC-CEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G-~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|+++++++.|++|..+++....|++.+| +++.+|.||+|+|...
T Consensus 213 ~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 213 ITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 445567789999999999999865443234777778 5699999999999654
No 290
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.38 E-value=0.0022 Score=71.41 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=41.5
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|++|..+++++. |.+.+|+++.+|.||+++|...
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDGVV-VTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEECCCcEEEecEEEEeecCCc
Confidence 44556788999999999999987666654 7778888999999999998654
No 291
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.37 E-value=0.0021 Score=71.09 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 47999999999999999999999999999997654
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.36 E-value=0.00099 Score=79.04 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=36.9
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+++.|+++++++.|++|..+.. .|.+.+|+++.+|++|+|+|...
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~---~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEK---VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCc---EEEECCCcEEECCEEEECCCCCc
Confidence 3557999999999999976543 25678888999999999999764
No 293
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.35 E-value=0.0017 Score=76.83 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=41.6
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.++++|++|++++.|++|..+ +++.+|++.||+++.+|.||+++|..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCCCEEEcCEEEECCCCC
Confidence 445567889999999999999654 45667889999999999999999954
No 294
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.35 E-value=0.0002 Score=77.54 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=33.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (675)
||+|||||++|+.||+.|+++|++|+|+|+.+..+-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999998776543
No 295
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.34 E-value=0.0019 Score=76.59 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=42.6
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++|++++.|++|..++ +....|.+.+|+++.+|.||+|+|...
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 4566788899999999999997543 345568889999999999999999543
No 296
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.34 E-value=0.0041 Score=66.56 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=51.4
Q ss_pred CcccccC-CCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC-CEEEcCEEEECCChh
Q 005823 376 GGINYPV-GGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG-REFYAKTIISNATRW 442 (675)
Q Consensus 376 ~g~~~p~-gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G-~~i~ad~VI~A~g~~ 442 (675)
.|..||. .-.+.++++|.+.+++.|++|+++++|++| ++++ ..|++.++ +++.||.||+|+|-.
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGGA 140 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCCc
Confidence 4667774 456899999999999999999999999999 4443 45776543 469999999999964
No 297
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.00015 Score=73.73 Aligned_cols=61 Identities=23% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCHH-HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 383 GGVG-GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 383 gG~~-~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.|++ .+.+.+.+.++..|++++.++.+++++..++.-.-+....|.....|.+++|+|...
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence 3444 456777899999999999999999998865543335556675556999999999653
No 298
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0014 Score=69.41 Aligned_cols=36 Identities=42% Similarity=0.612 Sum_probs=31.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...|||||||||.||.-||...+|.|.+.+++-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 457999999999999999999999999988876543
No 299
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.30 E-value=0.0029 Score=70.54 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4799999999999999999999999999997654
No 300
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.30 E-value=0.00034 Score=74.99 Aligned_cols=42 Identities=38% Similarity=0.462 Sum_probs=38.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+|+|||+|++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 457999999999999999999999999999999999998654
No 301
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.27 E-value=0.0033 Score=69.67 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=39.9
Q ss_pred HHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 393 ~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.++++|+++++++.|++|..+++.+ .|++.+|+++.+|.||+|+|...
T Consensus 214 ~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 214 ARNMEGRGIRIHPQTSLTSITKTDDGL-KVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCeE-EEEEcCCcEeecCEEEEeeCCCc
Confidence 345677899999999999998655554 36777888899999999999643
No 302
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00056 Score=69.64 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEe--CCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 388 IAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++.+|.+..++..+++..-.++++++.. .+....|++++|....++.||+++|+..
T Consensus 268 l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 3344555555556666555666666652 3445568999999999999999999765
No 303
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.26 E-value=0.0034 Score=69.85 Aligned_cols=39 Identities=38% Similarity=0.479 Sum_probs=34.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCC
Q 005823 154 GADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIP 192 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~~~ 192 (675)
...+||.||||||-||...|.+|++. ..+|+|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45689999999999999999999996 5799999998765
No 304
>PRK06370 mercuric reductase; Validated
Probab=97.24 E-value=0.004 Score=69.41 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 58999999999999999999999999999987654
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.24 E-value=0.00053 Score=72.83 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=27.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (675)
.+|+|+||.||++|+.|..|...+ .+++.||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999876 89999998764
No 306
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.23 E-value=0.0037 Score=68.90 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.++++|+++++++.|++|..++ .+ +.+.+|+++.+|.||+|+|..
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~-~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE-RV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC-CE--EEEcCCCEEEeCEEEECCCcc
Confidence 3455677899999999999997543 33 456788899999999999965
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.23 E-value=0.0012 Score=71.01 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 394 ~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
+.+++.|++++.+ +|++|..+++. |.+.+|+++.+|++|+|+|....
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~~~~~---V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDPDRRK---VLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEecccCE---EEECCCCcccccEEEEccCCCCC
Confidence 4455678999875 69999877663 66888988999999999997653
No 308
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.21 E-value=0.00037 Score=77.47 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC--CEEEcCEEEECCChhh
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..+++.+. +.. +| +++.+|.||+|+|...
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~-~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQAL-FEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEE-EEE-CCceEEEEeCEEEEecCCcc
Confidence 56788888999999999999999999976555432 333 34 3689999999999654
No 309
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.21 E-value=0.00094 Score=79.06 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=37.7
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++++|++++++++|++|..+... |.+.+|+++.+|++|+|+|...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~k~---V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQKQ---VITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCCCE---EEECCCcEeeCCEEEECCCCCc
Confidence 45679999999999999876653 5678898999999999999754
No 310
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.20 E-value=0.004 Score=69.62 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=37.8
Q ss_pred HHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC--C--CEEEcCEEEECCChhh
Q 005823 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSD--G--REFYAKTIISNATRWD 443 (675)
Q Consensus 393 ~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~--G--~~i~ad~VI~A~g~~~ 443 (675)
.+.++++|++|+++++|++|..+++++. |++.+ | +++.+|.||+|+|...
T Consensus 231 ~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 231 AKAFTKQGLDIHLGVKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred HHHHHHcCcEEEeCcEEEEEEEcCCEEE-EEEEeCCCceeEEEcCEEEEccCCcc
Confidence 3445678999999999999987666553 55544 3 4689999999999654
No 311
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.17 E-value=0.004 Score=69.93 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999864
No 312
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.15 E-value=0.0044 Score=69.09 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 58999999999999999999999999999987643
No 313
>PRK14694 putative mercuric reductase; Provisional
Probab=97.14 E-value=0.0053 Score=68.50 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999874
No 314
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.14 E-value=0.006 Score=67.86 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+++|||+|.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 57999999999999999999999999999987643
No 315
>PRK07846 mycothione reductase; Reviewed
Probab=97.13 E-value=0.0051 Score=68.22 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=36.9
Q ss_pred HcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 398 DKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 398 ~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.|++++++++|++|..+++++ .|.+.+|+++.+|.||+|+|...
T Consensus 218 ~~~v~i~~~~~v~~i~~~~~~v-~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQDGSGV-TLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred hcCeEEEeCCEEEEEEEcCCEE-EEEECCCcEeecCEEEEEECCcc
Confidence 4578999999999998766554 37778888999999999999654
No 316
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.12 E-value=0.0042 Score=68.68 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=37.4
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|++|. +. .|++.+|+++.+|.||+|+|...
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCCc
Confidence 4455678899999999999995 22 36677888899999999999643
No 317
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.10 E-value=0.0061 Score=67.51 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 192 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASL 192 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999998754
No 318
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.09 E-value=0.0072 Score=67.38 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 35799999999999999999999999999998553
No 319
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.0066 Score=65.45 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCCCCCcce
Q 005823 158 YDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~----g~~v~~~e~~~~~gg~~~ 197 (675)
++|+|||+|++|+..|.+|.+. +. |.|+|+....|+-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence 6899999999999999999985 33 999999998886443
No 320
>PRK14727 putative mercuric reductase; Provisional
Probab=97.08 E-value=0.0058 Score=68.40 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999874
No 321
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.04 E-value=0.0078 Score=66.70 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=37.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.++++|++|+++++|++|.. ++++..+.+++ .++.+|.||+|+|..
T Consensus 197 l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~-~~i~~d~vi~a~G~~ 245 (444)
T PRK09564 197 MEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDK-GEYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCC-CEEEcCEEEECcCCC
Confidence 44556778999999999999964 44555566654 479999999999964
No 322
>PRK13748 putative mercuric reductase; Provisional
Probab=97.01 E-value=0.0077 Score=68.88 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
..+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 358999999999999999999999999999974
No 323
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0069 Score=58.24 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.|.+.|.+..++.|.+|...+ |.++..+..-.+ |.+ +.+.+.+|.||+|+|+.+
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~sskpF~-l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLSSKPFK-LWT-DARPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhccccCCCeE-EEe-cCCceeeeeEEEecccce
Confidence 455667788888899998866 999988776443 444 555699999999999755
No 324
>PRK07846 mycothione reductase; Reviewed
Probab=96.93 E-value=0.00086 Score=74.34 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+||++|||+|++|.+||.. ..|.+|+|+|+. ..||.|-
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~ 38 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCL 38 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCccc
Confidence 3899999999999999876 369999999985 5677664
No 325
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.92 E-value=0.011 Score=65.58 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=36.3
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 399 KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.|+++++++.|++|..+++++. |++.+|+++.+|.||+|+|...
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVT-LTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence 4789999999999987666543 6777888899999999999554
No 326
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.90 E-value=0.024 Score=64.73 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
...|...|.+.+++.|++|+.++.+++++.+ +++|+||.. .+|+ .+.|+.||+|+|-..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 3578899999999999999999999999985 789999875 3565 478999999999765
No 327
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.89 E-value=0.00097 Score=73.99 Aligned_cols=38 Identities=32% Similarity=0.571 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
+||++|||+|++|..||.. ..|.+|+++|+. ..||.|-
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeee
Confidence 5899999999999998754 469999999985 5788664
No 328
>PTZ00058 glutathione reductase; Provisional
Probab=96.88 E-value=0.012 Score=66.64 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 4689999999999999999999999999999865
No 329
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.85 E-value=0.02 Score=61.24 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=64.7
Q ss_pred cccHHHHHHHhCCCHHH-HHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHcCcEEE
Q 005823 326 PQNAGNIARKYIKDPQL-LSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGLADKGSEIL 404 (675)
Q Consensus 326 ~~s~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~ 404 (675)
..+..+.+.+..-++.+ ..++.......-+-+ ...+++.+...+.. ..+|.+.++||..+|++.|.+. .|+++
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~-a~~gl~sV~GGN~qI~~~ll~~---S~A~v- 142 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG-ATGGLWSVEGGNWQIFEGLLEA---SGANV- 142 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee-ccCCceEecCCHHHHHHHHHHH---ccCcE-
Confidence 34445555544333333 345544443333222 33444433333222 3468889999999999998875 47899
Q ss_pred ecceeeEEE-EeC-Ce-EEEEEeCC--CC-EEEcCEEEECCChh
Q 005823 405 YKANVTKVI-LEQ-GK-AVGVRLSD--GR-EFYAKTIISNATRW 442 (675)
Q Consensus 405 ~~~~V~~I~-~~~-~~-v~gV~~~~--G~-~i~ad~VI~A~g~~ 442 (675)
++++|++|. ..+ +. ...|...+ +. .-.+|.||+|++..
T Consensus 143 l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 143 LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 999999993 332 22 23454433 22 33569999999864
No 330
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0018 Score=67.08 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=37.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCCcce
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (675)
..+.|.|||+||||+.+|..|.++ +..|.|+|+.+.|.|..+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvR 62 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVR 62 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceee
Confidence 345899999999999999999884 689999999999999887
No 331
>PLN02546 glutathione reductase
Probab=96.78 E-value=0.015 Score=66.04 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|+++++++.|++|..+++....|.+.+++...+|.||+++|...
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence 4455678899999999999997643333346666665455899999999654
No 332
>PRK10262 thioredoxin reductase; Provisional
Probab=96.76 E-value=0.011 Score=62.39 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=37.9
Q ss_pred HHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC------CEEEcCEEEECCChh
Q 005823 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG------REFYAKTIISNATRW 442 (675)
Q Consensus 393 ~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G------~~i~ad~VI~A~g~~ 442 (675)
.+.+++.|+++++++.|++|..+++++.+|++.++ +++.+|.||+++|..
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 34456778999999999999766556666776542 369999999999853
No 333
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.68 E-value=0.0098 Score=67.16 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=35.6
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCC---C--CEEEcCEEEECCChh
Q 005823 399 KGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRW 442 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VI~A~g~~ 442 (675)
+|++|++++.|++|.-+++++.+|++.+ | +++.+|.||+++|..
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 5899999999999987767777787654 2 368999999999854
No 334
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.68 E-value=0.018 Score=64.31 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 5899999999999999999999999999998754
No 335
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.63 E-value=0.00062 Score=64.61 Aligned_cols=41 Identities=34% Similarity=0.615 Sum_probs=36.5
Q ss_pred CccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCCcce
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (675)
+.||+|||+|-+||++||+.+++ ..+|.|+|..-.|||-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 46999999999999999999864 679999999999998654
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.60 E-value=0.025 Score=62.74 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|.+.|.+|+|+++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998753
No 337
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.43 E-value=0.032 Score=62.13 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+++|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 35899999999999999999999999999998753
No 338
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.42 E-value=0.028 Score=60.38 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=46.2
Q ss_pred HHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 391 SLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 391 ~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.+++.|+++++++.+.++..+ +|+++.|.+.||+++.||.||+.+|...
T Consensus 260 ~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 260 FYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 3556678899999999999999875 4788899999999999999999999754
No 339
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0059 Score=62.19 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhhHHhh
Q 005823 382 VGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDTFGK 447 (675)
Q Consensus 382 ~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~~~~~ 447 (675)
+|-.+.+++.+.+.++++|++|...+.+++|+..+++-..|... .++ +-.+|.|++|+|......+
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~ 304 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDD 304 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhh
Confidence 44458899999999999999999998888888654332334332 222 3468999999997665443
No 340
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.12 Score=54.36 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=50.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeE--EEEEeCCCCEEEcCEEEECCC
Q 005823 378 INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKA--VGVRLSDGREFYAKTIISNAT 440 (675)
Q Consensus 378 ~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v--~gV~~~~G~~i~ad~VI~A~g 440 (675)
..+|--|-++|.+.+.+.+.=.|+-.-++.+|..|..+++.. +.+....|+++.++.+|++-.
T Consensus 278 fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~ 342 (547)
T KOG4405|consen 278 FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPS 342 (547)
T ss_pred ceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCc
Confidence 568889999999999999988899999999999999886643 222335688889998887543
No 341
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.27 E-value=0.0049 Score=67.17 Aligned_cols=44 Identities=5% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 397 ADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 397 ~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.|+++++++.|+.|..++.. |.+.+|+++.+|++|+|+|...
T Consensus 69 ~~~~i~~~~g~~V~~id~~~~~---v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRDTRE---LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEECCCCE---EEECCCCEEEcCEEEEccCCCC
Confidence 3568899999999999876543 5567888899999999999654
No 342
>PRK12831 putative oxidoreductase; Provisional
Probab=96.11 E-value=0.07 Score=59.38 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...+|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 3568999999999999999999999999999864
No 343
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.08 E-value=0.0066 Score=67.10 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~ 192 (675)
.+|+|||||++|++||..|++. +++|+|+|+.+..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 3799999999999999999886 6789999998753
No 344
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.07 E-value=0.059 Score=59.93 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (675)
...+|+|||+|..|+-+|..|++.|. +|+++++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 34689999999999999999999998 79998864
No 345
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.96 E-value=0.077 Score=61.30 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|+|||+|..|+-.|..|++.|.+|+|+|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 4799999999999999999999999999998764
No 346
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.94 E-value=0.048 Score=61.68 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=35.1
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCC---CC--EEEcCEEEECCChh
Q 005823 399 KGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATRW 442 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VI~A~g~~ 442 (675)
.|+++++++.|++|..+++++++|++.+ |+ ++.+|.|++++|..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 4889999999999987767777777643 43 58999999998853
No 347
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.77 E-value=0.086 Score=54.66 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=29.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 358999999999999999999999999999874
No 348
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.64 E-value=0.031 Score=63.11 Aligned_cols=50 Identities=28% Similarity=0.447 Sum_probs=44.2
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
|.+.+++.|+++++++.+++|.. .+++.+|+++||.++.||-||+|+|..
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc-CcceeeEeecCCCcccceeEEEecccc
Confidence 66778888999999999988876 667889999999999999999999954
No 349
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.024 Score=57.87 Aligned_cols=37 Identities=35% Similarity=0.489 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
...|.|||||+||.-|||+++++|.+|.++|-.+.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 3469999999999999999999999999999876544
No 350
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.34 E-value=0.063 Score=56.66 Aligned_cols=37 Identities=32% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (675)
...+|+|.||-||.-|+.|..|...+ .+++.+||.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 45689999999999999999999875 78999999764
No 351
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.83 E-value=0.029 Score=52.58 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||||..|.++|..|+++|++|+++.+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 352
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.74 E-value=0.12 Score=58.94 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005823 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
...|...|.+.+++.|++|+.++.|++++.++|+|+||.. .+|+ .+.|+.||+|+|-..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 3578899999999999999999999999988899999875 3565 578999999999764
No 353
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.63 E-value=0.04 Score=52.89 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999865
No 354
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.57 E-value=0.044 Score=59.26 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=34.7
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005823 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+++.|++++++++|++|..++.. |.+ +|+++.+|+||+|+|...
T Consensus 68 ~~~~gv~~~~~~~V~~id~~~~~---v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAEAQV---VKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHhCCCEEECCCEEEEEECCCCE---EEE-CCeEEeCCEEEECCCCCC
Confidence 45668999999999999876653 334 566899999999999754
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.51 E-value=0.46 Score=55.41 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhCC
Q 005823 615 TGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 615 t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
|.++|+|.+||.+....-+.-|+..|+.||..|.+.|+.
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 677999999998743334578999999999999998875
No 356
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.43 E-value=0.91 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||||..|+..+..|.+.|.+|+|++....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 35899999999999999999999999999987543
No 357
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.32 E-value=0.048 Score=57.44 Aligned_cols=37 Identities=30% Similarity=0.507 Sum_probs=31.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc----CCeEEEEecCCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVK----GARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~----g~~v~~~e~~~~ 191 (675)
...+||+|||||+.|++.|..|... ..+|+++|..+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 4479999999999999999988863 468999998743
No 358
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.11 E-value=0.64 Score=51.85 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4689999999999999999999995 699998753
No 359
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.09 E-value=0.053 Score=52.28 Aligned_cols=34 Identities=35% Similarity=0.359 Sum_probs=27.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++|.|||.|..||.+|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4699999999999999999999999999998763
No 360
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.02 E-value=0.058 Score=60.03 Aligned_cols=34 Identities=38% Similarity=0.466 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
+|+|||.|.+|+++|..|+++|++|+++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987654
No 361
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.91 E-value=0.43 Score=58.31 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeC----CCCEEEcCEEEECCChh
Q 005823 396 LADKGSEILYKANVTKVILEQGKAVGVRLS----DGREFYAKTIISNATRW 442 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~----~G~~i~ad~VI~A~g~~ 442 (675)
++++|++|++++.|++|.-+ +++.+|++. +++++.+|.|+++.|..
T Consensus 361 L~~~GV~i~~~~~v~~i~g~-~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG-KRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC-CcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 46678999999999998643 455566654 45679999999999854
No 362
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.82 E-value=0.077 Score=59.41 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|.+|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999765
No 363
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.12 E-value=0.1 Score=54.76 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||+|..|.+.|..|+++|++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 3699999999999999999999999999998754
No 364
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.91 E-value=0.16 Score=47.01 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 160 ~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
|+|+|+|..|...|++|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999865
No 365
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.83 E-value=3.3 Score=40.45 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468999999999999999999999999999864
No 366
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.75 E-value=0.13 Score=51.19 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++++|||+|..|.+.|..|.+.|+.|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 3699999999999999999999999999999865
No 367
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.52 E-value=0.19 Score=52.70 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..|.|||+|..|..-|..++..|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.40 E-value=0.18 Score=52.24 Aligned_cols=34 Identities=32% Similarity=0.257 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||+|..|..-|..+++.|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998764
No 369
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.40 E-value=0.17 Score=56.17 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999864
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.01 E-value=0.21 Score=51.95 Aligned_cols=33 Identities=30% Similarity=0.226 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 371
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.00 E-value=0.19 Score=52.16 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 372
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.90 E-value=0.24 Score=52.03 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.++|+|||+|..|...|..|++.|++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4579999999999999999999999999999864
No 373
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.64 E-value=0.19 Score=52.10 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 599999999999999999999999999998753
No 374
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.51 E-value=0.13 Score=44.47 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=51.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC--CCCCcceeEeeCCeEEcc-ccccccCCC-CCCchHHHHHHHHHc
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV--IPGGSSGYYERDGYTFDV-GSSVMFGFS-DKGNLNLITQALAAV 232 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~--~~gg~~~t~~~~g~~~d~-G~~~~~g~~-~~~~~~~~~~ll~~l 232 (675)
...|+|||+|..|..-+..|.+.|.+|+|+.... .- +... +....+.-+. +...++... +......+.+..+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-~~i~-~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~ 84 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-GLIQ-LIRREFEEDLDGADLVFAATDDPELNEAIYADARAR 84 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-TSCE-EEESS-GGGCTTESEEEE-SS-HHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-hHHH-HHhhhHHHHHhhheEEEecCCCHHHHHHHHHHHhhC
Confidence 4689999999999999999999999999999873 12 3332 3333332111 122222111 111223455666777
Q ss_pred CCceeEeeCCCeEEE
Q 005823 233 GCEMEVIPDPTTVHF 247 (675)
Q Consensus 233 Gl~~~~~~~~~~~~~ 247 (675)
++.+.....+....|
T Consensus 85 ~i~vn~~D~p~~~dF 99 (103)
T PF13241_consen 85 GILVNVVDDPELCDF 99 (103)
T ss_dssp TSEEEETT-CCCCSE
T ss_pred CEEEEECCCcCCCeE
Confidence 776655544444333
No 375
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.18 E-value=0.3 Score=53.76 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
-...++|||||..|+=.|..+++.|.+|+|+|+.+..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3457999999999999999999999999999998865
No 376
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.14 E-value=0.34 Score=45.84 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=29.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...|+|+|+|.+|..||..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4789999999999999999999999999999754
No 377
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=91.13 E-value=0.37 Score=43.79 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
...+++|||+|-+|-+++.+|+..|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 357899999999999999999999987 99999864
No 378
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.76 E-value=0.31 Score=51.00 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.++|+|||+|..|...|.+|++.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999863
No 379
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=90.68 E-value=0.33 Score=54.00 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 358999999999999999999999999999998754
No 380
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.57 E-value=0.31 Score=51.58 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+++.|||+|-.||+.|.-|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 468999999999999999999999999999865
No 381
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.50 E-value=0.31 Score=50.62 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 382
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=90.49 E-value=0.33 Score=50.63 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
+|+|||+|..|...|..|++.|++|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999985
No 383
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.28 E-value=0.34 Score=47.07 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 34789999999999999999999999999998865
No 384
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.27 E-value=0.42 Score=50.60 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 385
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.12 E-value=0.35 Score=50.51 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~ 188 (675)
+|.|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 599999999999999999999999999997
No 386
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.11 E-value=0.29 Score=51.58 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
-|.+.-.+.+++.|++|+-|+.|.++....+.++ +.++||.++..|.||+|+|--
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~-lkL~dG~~l~tD~vVvavG~e 448 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV-LKLSDGSELRTDLVVVAVGEE 448 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhccceE-EEecCCCeeeeeeEEEEecCC
Confidence 3566777899999999999999999988777765 889999999999999999954
No 387
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.00 E-value=0.43 Score=50.10 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999765
No 388
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.97 E-value=0.43 Score=49.72 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 389
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.91 E-value=0.35 Score=50.04 Aligned_cols=34 Identities=29% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||+|..|.+.|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999997653
No 390
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.83 E-value=0.4 Score=52.52 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||.|..|+..|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998654
No 391
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=89.73 E-value=0.42 Score=50.88 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 46999999999999999999999999999985
No 392
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=89.66 E-value=0.56 Score=43.87 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=29.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~ 188 (675)
...+|+|||||-.|+.-|..|.+.|++|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 356899999999999999999999999999953
No 393
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.53 E-value=0.47 Score=49.71 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~ 191 (675)
+|.|||+|..|.++|+.|+++| .+|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 6999999999999999999999 58999998653
No 394
>PRK04148 hypothetical protein; Provisional
Probab=89.52 E-value=0.41 Score=43.15 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.++++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 579999999 999999999999999999998765
No 395
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.38 E-value=0.38 Score=49.08 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
-..-+|+|||+|.+|.-+|.-+...|.+|+|+|.+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 34568999999999999999999999999999987
No 396
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.37 E-value=0.54 Score=49.19 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
.+|.|||+|..|...|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999843
No 397
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.26 E-value=0.57 Score=45.74 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4679999999999999999999999 599999874
No 398
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.25 E-value=0.62 Score=44.04 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCccEEEECCCh-hHHHHHHHHHHcCCeEEEEecC
Q 005823 156 DDYDAIVIGSGI-GGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g~-~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...+|+|||+|- .|..+|.+|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999996 6999999999999999999975
No 399
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.06 E-value=0.55 Score=50.55 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|.+|+.+|..|.+.|.+|+++|+..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999854
No 400
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.98 E-value=0.56 Score=52.70 Aligned_cols=34 Identities=29% Similarity=0.265 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..|.|||+|..|...|..|++.|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999998765
No 401
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.89 E-value=0.46 Score=52.06 Aligned_cols=33 Identities=33% Similarity=0.246 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998754
No 402
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=88.74 E-value=1.1 Score=48.14 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.+.+.+.++++|++++++++|++|. ++ .|.+.+|+++.+|.||+|+|..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCCC
Confidence 566778888999999999999999884 33 3667889999999999999854
No 403
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.74 E-value=0.63 Score=48.77 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.++|.|||+|..|.+.|..|++.|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999875
No 404
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.39 E-value=0.62 Score=49.90 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcC-CeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~ 189 (675)
.+|+|||+|-.|.++|+.|++.| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 899999997
No 405
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=87.97 E-value=24 Score=38.09 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC--EEEcCEEEECCChh
Q 005823 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VI~A~g~~ 442 (675)
++.+-..+.+.+.|+++++++.|+.+. +..+ .+.+.||+ +|.+..+|+++|..
T Consensus 274 rl~~yae~~f~~~~I~~~~~t~Vk~V~--~~~I-~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 274 RLVEYAENQFVRDGIDLDTGTMVKKVT--EKTI-HAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred HHHHHHHHHhhhccceeecccEEEeec--CcEE-EEEcCCCceeeecceEEEecCCCC
Confidence 566666777888899999999999884 3333 35556664 68889999999843
No 406
>PLN02507 glutathione reductase
Probab=87.96 E-value=0.64 Score=52.27 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+|+|||+|..|+-.|..|++.|.+|+|+++.+.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 57999999999999999999999999999987643
No 407
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.84 E-value=0.66 Score=51.73 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+|+|+|+|++||.++..+...|.+|+++|..+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999999999999999999999999764
No 408
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.72 E-value=0.7 Score=51.87 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|..-|..|+++|++|+|+|+.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 409
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.68 E-value=0.66 Score=48.88 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|...|..|++.|++|+++++.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 369999999999999999999999999999864
No 410
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.63 E-value=0.69 Score=52.78 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998764
No 411
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=87.63 E-value=0.86 Score=42.85 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.+||-|..|...|..|+++|++|.++|+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999874
No 412
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.51 E-value=0.67 Score=49.00 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||+|..|.+.|..|++.|++|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999854
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.31 E-value=0.83 Score=49.59 Aligned_cols=35 Identities=37% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|+|.|+.|+.+|..+...|.+|+++|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 35689999999999999999999999999999865
No 414
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.18 E-value=0.93 Score=39.63 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 160 ~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
|+|+|.|..|...|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998889999999864
No 415
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.16 E-value=0.68 Score=51.91 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 416
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=87.06 E-value=0.76 Score=47.06 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC-CC--EEEcCEE
Q 005823 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD-GR--EFYAKTI 435 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~-G~--~i~ad~V 435 (675)
|....+++|.+.++++.++|.+.....+|..++..++=-.+.+ |. +++++.+
T Consensus 234 gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslL 288 (446)
T KOG3851|consen 234 GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLL 288 (446)
T ss_pred cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeee
Confidence 5678999999999999999999998888877765543111233 53 4566643
No 417
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.96 E-value=0.71 Score=47.65 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 418
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=86.78 E-value=0.84 Score=48.83 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
...|+|||+|..|+-+|..|.+.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35799999999999999999999987 99998753
No 419
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.75 E-value=1.1 Score=43.87 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...++|+|.|-.|..+|..|.+.|++|++.|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4679999999999999999999999999998753
No 420
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=86.49 E-value=0.56 Score=46.70 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=27.8
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIP 192 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~ 192 (675)
+.+|||||+||.+||-.|+.. ..+|+++-+...+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 368999999999999999984 4578888776554
No 421
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.47 E-value=0.86 Score=50.47 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..|+|+|+|.+|+++|..|++.|++|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999764
No 422
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.37 E-value=1 Score=49.86 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..++|+|.|.+|+++|..|+++|++|+++|.....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 57999999999999999999999999999976643
No 423
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.36 E-value=1 Score=46.60 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|-+|.++|+.|++.|. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3679999999999999999999998 699999864
No 424
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.35 E-value=0.91 Score=50.87 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 46999999999999999999999999999874
No 425
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.26 E-value=1.3 Score=46.70 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|..|.+.|+.++..|+ +|+++|..+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 8999998765
No 426
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.23 E-value=0.98 Score=49.40 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=33.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|+|-|.+|++||..|.+.|++|++.|..+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999977665
No 427
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.03 E-value=1.3 Score=46.50 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
...+|+|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45699999999999999999999988 799999854
No 428
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.92 E-value=0.98 Score=50.24 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|+|.|.+|+++|..|.+.|++|++.|+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999765
No 429
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.88 E-value=0.83 Score=49.47 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|.|||.|..|+..|..++. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 58999999999999988875 999999998654
No 430
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=85.87 E-value=0.83 Score=44.41 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.....|.|||+|..|.-.|-..+..|+.|.++|++..
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 3456799999999999999999999999999998764
No 431
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.56 E-value=1.2 Score=44.25 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.9
Q ss_pred cEEEEC-CChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.||| +|..|.+.|..|++.|++|++++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998754
No 432
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.31 E-value=1.3 Score=46.14 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||.|.+|..+|..|.+.|.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999999999999999999999999999874
No 433
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=85.05 E-value=1.1 Score=49.94 Aligned_cols=36 Identities=19% Similarity=0.006 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHH-HHHHHHHcCCeEEEEecCCC
Q 005823 156 DDYDAIVIGSGIGGLV-AATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~-~a~~l~~~g~~v~~~e~~~~ 191 (675)
+..+|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3457999999999999 69999999999999997654
No 434
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=85.03 E-value=1.5 Score=39.73 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|...|..|++.|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3579999999999999999999998 6999997654
No 435
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=85.03 E-value=1.3 Score=49.68 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHH---cCCeEEEEecCCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAV---KGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~---~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-.|..++. .|.+|+|+|+.+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 3579999999999999976654 49999999998764
No 436
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=85.02 E-value=1.8 Score=35.79 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.1
Q ss_pred CccEEEECCChhHHHHHHHHHHc-CCeEEEEec
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVK-GARVLVLEK 188 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~ 188 (675)
..+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 45799999999999999999998 678999998
No 437
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.00 E-value=1.3 Score=47.08 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4679999999999999999999998 7999998754
No 438
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.86 E-value=0.96 Score=53.17 Aligned_cols=34 Identities=35% Similarity=0.318 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..|.|||+|..|...|..++..|++|+++|..+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 439
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.86 E-value=1.1 Score=49.67 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~ 191 (675)
++|.|||.|..|+.+|..|+++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4699999999999999999998 588999997653
No 440
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.76 E-value=1.4 Score=46.24 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
.+|+|||+|..|.+.|+.++..|+ +|+++|..+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 579999999999999999999876 8999998553
No 441
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.72 E-value=1.3 Score=46.44 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~ 191 (675)
+|+|||+|-.|.++|+.|+..| .+++++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 57999998654
No 442
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.55 E-value=1.3 Score=49.79 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...|+|+|.|.+|++++..|.+.|++|++.|..
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999965
No 443
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=84.51 E-value=1.3 Score=40.24 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.6
Q ss_pred EEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 160 AIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 160 ~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++|+|+|..+.+.|..++..|++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999997743
No 444
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.43 E-value=1.5 Score=44.74 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
...|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4679999999999999999999995 7999997653
No 445
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.39 E-value=1.2 Score=49.54 Aligned_cols=34 Identities=15% Similarity=-0.039 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|+|+|.|.+|.++|..|.+.|.+|++.|....
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 4799999999999999999999999999996543
No 446
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.32 E-value=1.6 Score=42.24 Aligned_cols=33 Identities=39% Similarity=0.514 Sum_probs=29.8
Q ss_pred CccEEEECC-ChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
..+++|+|+ |..|..+|..|++.|++|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999997 999999999999999999999875
No 447
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.31 E-value=1.5 Score=46.61 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|-.|..+|..|++.|. +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4679999999999999999999999 799999864
No 448
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=84.10 E-value=1.1 Score=46.46 Aligned_cols=32 Identities=28% Similarity=0.202 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999874
No 449
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=84.09 E-value=1.1 Score=52.63 Aligned_cols=36 Identities=33% Similarity=0.309 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.-..|.|||+|..|...|..++.+|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998754
No 450
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=83.88 E-value=2.4 Score=47.34 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=38.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-----CC---------CEEEcCEEEECCCh
Q 005823 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-----DG---------REFYAKTIISNATR 441 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-----~G---------~~i~ad~VI~A~g~ 441 (675)
..+.+++.|+++++++.+++|..+++++++|++. +| +++.+|.||+|+|.
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 3456778899999999999997667888877642 22 36889999988883
No 451
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.79 E-value=1.5 Score=45.42 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....++|||.|-.|...|..|+..|.+|++++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999865
No 452
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.77 E-value=1.2 Score=46.17 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..|.|||||..|-.-|..++..|++|+++|...
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 579999999999999999999889999999873
No 453
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=83.67 E-value=1.6 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
...++|+|+|-+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 35799999999999999999999996 99999864
No 454
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.44 E-value=1.8 Score=45.33 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
+.+|+|||+|-.|.++|+.|+..|. ++.++|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 5689999999999999999999876 599999765
No 455
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=83.39 E-value=1.6 Score=43.53 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe---EEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGAR---VLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~---v~~~e~~~ 190 (675)
..+++|+|+|-+|..+|..|.+.|.+ |.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 35799999999999999999999974 99999874
No 456
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.38 E-value=1.5 Score=48.84 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|+|+|.+|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4789999999999999999999999999999764
No 457
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=1.4 Score=45.62 Aligned_cols=36 Identities=33% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.-..+||+|||||-+|.-||+.|+--=..|+++|=.
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 345789999999999999999998755579999843
No 458
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=83.04 E-value=1.3 Score=47.89 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCCCccEEEEC-CChhHHHHHHHHHHcCCeEEEEecC
Q 005823 154 GADDYDAIVIG-SGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 154 ~~~~~~~~iig-~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+....|.||| .|..|-+.|..|.++|+.|+++++.
T Consensus 95 ~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 95 NPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 33557899999 8999999999999999999999985
No 459
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.90 E-value=1.8 Score=44.36 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...++|+|+|-+|.+.|..|++.|++|+|++|..
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999998864
No 460
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=82.89 E-value=2.3 Score=38.92 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=29.4
Q ss_pred ccEEEECC-ChhHHHHHHHHHHcCC--eEEEEecCC
Q 005823 158 YDAIVIGS-GIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~-g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
.+|.|||+ |..|.+.|+.|...+. ++.++|..+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999865 699999874
No 461
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.75 E-value=1.6 Score=48.68 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..|.|+|.|.+|+++|..|.+.|++|++.|+..
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 469999999999999999999999999999753
No 462
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.70 E-value=2 Score=41.96 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4689999999999999999999998 799999764
No 463
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.65 E-value=1.9 Score=41.06 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
+|+|||+|-.|...|..|++.|.. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999864
No 464
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=82.47 E-value=1.9 Score=46.79 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 35689999999999999999999999999999765
No 465
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.41 E-value=1.9 Score=40.22 Aligned_cols=35 Identities=37% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....++|+|=|-.|-.+|..|+..|.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 35679999999999999999999999999999876
No 466
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.16 E-value=2.1 Score=45.10 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (675)
..+|+|||+|..|.+.|+.|+..| .+++++|..+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 468999999999999999999998 5899999865
No 467
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=82.15 E-value=1.8 Score=47.63 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHH--------------cCCeEEEEecCCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAV--------------KGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~--------------~g~~v~~~e~~~~~ 192 (675)
.+|+|||+|++|+-.|..|+. .|.+|+|+|+.+.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 479999999999999988875 37899999988654
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.07 E-value=1.4 Score=51.94 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
-..|.|||+|..|...|..++..|++|+++|..+.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 35799999999999999999999999999998764
No 469
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.98 E-value=1.9 Score=45.17 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
.+|.|||+|..|.+.|..|.+.|+ +|+++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899999864
No 470
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=81.78 E-value=1.8 Score=51.49 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
..+|+|||||..|+-+|..+.+.|.+ |+|+++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99998754
No 471
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=81.73 E-value=1.7 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999865
No 472
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.64 E-value=1.7 Score=45.27 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 160 AIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 160 ~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
|.|||+|..|...|+.|+.+|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999874
No 473
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.24 E-value=2.5 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
+|+|||.|-.|...|..|++.|. +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 6999997654
No 474
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.11 E-value=2 Score=47.61 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 3579999999999999999995 9999999954
No 475
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.05 E-value=1.8 Score=45.23 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++|.|+|+|..|...|++|++.|..|+++-|.+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 3699999999999999999999988888887653
No 476
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.97 E-value=2.4 Score=41.78 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
..+|+|||+|-.|..+|..|++.|.. ++|+|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46799999999999999999999985 99999864
No 477
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.92 E-value=2 Score=48.42 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..|.|||.|.+|+++|..|.+.|++|++.|...
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 469999999999999999999999999999754
No 478
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=80.84 E-value=3.2 Score=47.53 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005823 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
..+...-.+..+++|++++.+.+|+.|..+++. |.+++|.++.+|.+|+|+|....
T Consensus 59 edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~---V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 59 EDISLNRNDWYEENGITLYTGEKVIQIDRANKV---VTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HHHhccchhhHHHcCcEEEcCCeeEEeccCcce---EEccCCcEeecceeEEecCcccc
Confidence 344444455668899999999999999877654 56889999999999999997653
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.83 E-value=1.8 Score=47.95 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|+|+|+|..|...|..|.+.|++|+++|++..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998654
No 480
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.79 E-value=2.3 Score=46.36 Aligned_cols=36 Identities=36% Similarity=0.295 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
....|+|+|.|..|..+|..|...|.+|+++|+.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 356899999999999999999999999999998653
No 481
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=80.76 E-value=1.7 Score=48.30 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||.|..|...|..|+++|++|+++++...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999999765
No 482
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=80.72 E-value=1.8 Score=50.78 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHH-HcCCeEEEEecCCC
Q 005823 158 YDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~-~~g~~v~~~e~~~~ 191 (675)
..|.|||+|..|...|..++ +.|++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 57999999999999999998 58999999998753
No 483
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.68 E-value=2.8 Score=38.69 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=30.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (675)
..+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357999999999999999999986 7899999864
No 484
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=80.49 E-value=2.2 Score=44.38 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 369999999999999999999999999999864
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.33 E-value=1.8 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.111 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHH-HcCCeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLA-VKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~-~~g~~v~~~e~~~ 190 (675)
-..|.|||+|..|...|..++ +.|++|+++|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999998 8899999999865
No 486
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.07 E-value=2.2 Score=46.80 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|+|||-|.+|+++|..|.++|++|++.|+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999999754
No 487
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=80.03 E-value=2.2 Score=44.53 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|.|||.|..|...|..|++.|++|++++++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 599999999999999999999999999998753
No 488
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.02 E-value=2.6 Score=42.44 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 4689999999999999999999997 5999997654
No 489
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=79.95 E-value=2.4 Score=43.56 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|.+||-|..|...|.+|.++|+.|++++|...
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 689999999999999999999999999999864
No 490
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.91 E-value=2.1 Score=47.43 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
--|+|||-|-+|+++|..|.+.|++|++.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 348999999999999999999999999999765
No 491
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=79.88 E-value=2.7 Score=43.30 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (675)
...|+|+|+|-+|.++|..|+..| .+|+|+.|..
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 457999999999999999999999 6899999864
No 492
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=79.77 E-value=2.9 Score=42.17 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+...++|+|+|..+...|..+...|++|+|+|-.+.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999996543
No 493
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=79.73 E-value=2.7 Score=43.36 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|-++-++|+.|++.|. +|+|+.|..
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4579999999999999999999997 699998864
No 494
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.52 E-value=2.2 Score=47.50 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+|.|||.|-+|+++|..|.+.|++|.+.|..
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 47999999999999999999999999999965
No 495
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=79.42 E-value=2.9 Score=42.21 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||.|-.|..+|..|++.|. +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999997 699999764
No 496
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=78.83 E-value=2.7 Score=47.57 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...++|+|+|-+|.++|+.|++.|.+|+|+.|.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999999999999999999999999999875
No 497
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=78.74 E-value=2.6 Score=51.04 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+|+|||||..|+-||..+.+.|.+|+++.+..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 34689999999999999999999999999998764
No 498
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=78.56 E-value=3.1 Score=41.80 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-----------eEEEEecCC
Q 005823 156 DDYDAIVIGSGIGGLVAATQLAVKGA-----------RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-----------~v~~~e~~~ 190 (675)
...+|+|||+|-.|..++..|++.|+ +++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45789999999999999999999752 667777543
No 499
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=78.14 E-value=3.3 Score=42.74 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005823 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...++|+|+|-++-++|+.|++.|. +++|++|..
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3579999999999999999999997 699998864
No 500
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=78.14 E-value=2.8 Score=40.34 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=39.4
Q ss_pred HHHHHHHHcCcEEEecceeeEEEEeCCeE-------EEEEeCCCCEEEcCEEEECCChh
Q 005823 391 SLAKGLADKGSEILYKANVTKVILEQGKA-------VGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 391 ~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v-------~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.+.+...+++++++++|.+|....+.+ ..+...++.++.+|.||+|+|..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 45666677799999999999998887742 11233456689999999999954
Done!