Query 005824
Match_columns 675
No_of_seqs 464 out of 2299
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 14:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 6E-76 1.3E-80 576.2 38.2 404 8-415 37-450 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 7.4E-65 1.6E-69 572.9 52.7 420 8-427 5-428 (653)
3 PTZ00186 heat shock 70 kDa pre 100.0 6.1E-64 1.3E-68 559.8 49.1 391 8-408 28-422 (657)
4 PTZ00400 DnaK-type molecular c 100.0 1.8E-62 3.8E-67 552.9 48.4 409 8-427 42-458 (663)
5 PRK13410 molecular chaperone D 100.0 4.3E-62 9.3E-67 547.7 51.3 390 8-408 3-397 (668)
6 PRK13411 molecular chaperone D 100.0 4.7E-62 1E-66 549.4 49.9 413 8-431 3-423 (653)
7 PRK00290 dnaK molecular chaper 100.0 1.7E-61 3.8E-66 545.9 50.7 410 8-430 3-420 (627)
8 PLN03184 chloroplast Hsp70; Pr 100.0 2.5E-61 5.4E-66 543.6 49.9 411 8-429 40-458 (673)
9 TIGR02350 prok_dnaK chaperone 100.0 1.5E-60 3.2E-65 536.9 49.5 409 8-429 1-417 (595)
10 CHL00094 dnaK heat shock prote 100.0 5.3E-60 1.1E-64 532.0 50.3 411 8-429 3-421 (621)
11 TIGR01991 HscA Fe-S protein as 100.0 4.8E-60 1E-64 528.8 49.6 382 9-408 1-383 (599)
12 PRK05183 hscA chaperone protei 100.0 1.8E-59 4E-64 525.0 49.3 380 8-408 20-399 (616)
13 PF00012 HSP70: Hsp70 protein; 100.0 5.2E-60 1.1E-64 538.4 44.1 396 9-408 1-399 (602)
14 KOG0101 Molecular chaperones H 100.0 8.7E-60 1.9E-64 501.1 35.2 425 1-425 1-428 (620)
15 KOG0102 Molecular chaperones m 100.0 1.5E-59 3.2E-64 478.1 31.1 397 8-415 28-438 (640)
16 COG0443 DnaK Molecular chapero 100.0 3.8E-57 8.3E-62 498.3 42.9 372 8-409 6-379 (579)
17 KOG0103 Molecular chaperones H 100.0 8.2E-58 1.8E-62 479.5 32.5 397 7-406 1-402 (727)
18 PRK01433 hscA chaperone protei 100.0 2.8E-55 6.1E-60 486.5 43.9 354 8-408 20-377 (595)
19 KOG0104 Molecular chaperones G 100.0 1.4E-53 3E-58 448.0 35.3 428 8-438 23-478 (902)
20 PRK11678 putative chaperone; P 100.0 1.5E-49 3.3E-54 425.8 40.6 337 9-384 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.5E-36 3.2E-41 318.9 34.6 307 10-384 6-324 (336)
22 PRK13929 rod-share determining 100.0 5.7E-36 1.2E-40 313.3 33.8 305 9-381 6-324 (335)
23 PRK13927 rod shape-determining 100.0 7.8E-34 1.7E-38 298.8 34.7 306 9-383 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 1.2E-33 2.5E-38 296.7 35.0 306 10-383 5-327 (333)
25 PRK13930 rod shape-determining 100.0 5.5E-33 1.2E-37 292.8 34.1 307 10-384 11-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 3.4E-33 7.4E-38 284.6 23.9 306 9-382 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 2.7E-29 5.8E-34 244.8 28.3 310 9-386 8-334 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 4.7E-29 1E-33 247.2 24.0 204 117-379 35-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 1.5E-26 3.2E-31 233.5 28.7 202 121-381 66-267 (267)
30 PRK09472 ftsA cell division pr 99.9 6.7E-24 1.4E-28 228.5 24.0 196 159-383 168-388 (420)
31 TIGR01174 ftsA cell division p 99.9 1.2E-23 2.6E-28 224.2 23.0 195 156-380 157-371 (371)
32 COG0849 ftsA Cell division ATP 99.9 3.4E-22 7.4E-27 208.8 23.1 197 159-384 167-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 6.9E-17 1.5E-21 172.7 15.7 299 10-383 2-347 (371)
34 COG4820 EutJ Ethanolamine util 99.7 1.5E-17 3.3E-22 150.3 7.8 197 126-381 76-272 (277)
35 PRK13917 plasmid segregation p 99.7 2.7E-15 5.9E-20 157.0 25.2 206 146-386 115-339 (344)
36 smart00268 ACTIN Actin. ACTIN 99.7 2.4E-16 5.3E-21 168.7 15.9 300 8-383 2-347 (373)
37 PTZ00280 Actin-related protein 99.6 1.6E-14 3.5E-19 156.1 23.3 226 120-359 80-337 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.6 7.5E-14 1.6E-18 145.5 19.7 207 142-381 101-318 (320)
39 PTZ00004 actin-2; Provisional 99.6 1.1E-13 2.4E-18 147.6 19.8 303 1-382 1-351 (378)
40 PF00022 Actin: Actin; InterP 99.6 9E-14 1.9E-18 150.1 18.5 309 8-383 5-367 (393)
41 PTZ00452 actin; Provisional 99.6 2.5E-13 5.5E-18 144.2 21.3 299 8-382 6-348 (375)
42 TIGR01175 pilM type IV pilus a 99.6 5.5E-13 1.2E-17 141.5 23.0 179 156-381 142-347 (348)
43 PF11104 PilM_2: Type IV pilus 99.5 1E-13 2.2E-18 145.9 15.7 207 125-381 88-339 (340)
44 PTZ00281 actin; Provisional 99.5 3.7E-13 8E-18 143.4 17.9 239 120-382 79-349 (376)
45 PTZ00466 actin-like protein; P 99.5 4.2E-13 9E-18 142.7 15.7 238 120-382 85-353 (380)
46 PF06406 StbA: StbA protein; 99.4 8.2E-13 1.8E-17 137.2 13.1 175 171-378 140-316 (318)
47 COG4972 PilM Tfp pilus assembl 99.3 1.4E-10 3.1E-15 114.3 20.9 157 157-358 149-311 (354)
48 KOG0679 Actin-related protein 99.2 6E-10 1.3E-14 111.4 19.1 117 119-248 83-202 (426)
49 COG5277 Actin and related prot 99.2 7.3E-10 1.6E-14 118.5 18.9 231 144-382 107-417 (444)
50 TIGR00241 CoA_E_activ CoA-subs 99.1 5.2E-09 1.1E-13 105.1 17.1 170 175-380 73-248 (248)
51 TIGR03192 benz_CoA_bzdQ benzoy 99.0 6.1E-08 1.3E-12 96.9 20.4 176 175-383 106-288 (293)
52 PRK10719 eutA reactivating fac 98.9 3.9E-09 8.5E-14 110.7 9.8 83 145-240 90-184 (475)
53 TIGR03286 methan_mark_15 putat 98.8 3.1E-07 6.7E-12 95.4 20.2 180 175-382 220-402 (404)
54 COG1924 Activator of 2-hydroxy 98.8 2.4E-07 5.2E-12 93.7 18.0 179 175-383 211-390 (396)
55 KOG0676 Actin and related prot 98.7 8.8E-08 1.9E-12 98.9 12.2 231 125-382 82-345 (372)
56 TIGR02261 benz_CoA_red_D benzo 98.7 1.8E-06 3.9E-11 85.3 20.5 178 176-381 80-262 (262)
57 TIGR02259 benz_CoA_red_A benzo 98.7 2.7E-06 5.9E-11 87.3 20.7 179 175-381 249-432 (432)
58 PF07520 SrfB: Virulence facto 98.6 1.1E-05 2.3E-10 92.0 25.5 327 53-385 331-836 (1002)
59 PF07649 C1_3: C1-like domain; 98.5 1.9E-08 4.2E-13 64.3 0.1 29 444-472 1-30 (30)
60 PF07649 C1_3: C1-like domain; 98.5 2.4E-08 5.1E-13 63.9 0.1 29 510-538 1-30 (30)
61 KOG0677 Actin-related protein 98.5 6.1E-06 1.3E-10 78.6 16.1 194 143-358 101-318 (389)
62 PF03107 C1_2: C1 domain; Int 98.4 1.1E-07 2.4E-12 60.6 2.4 28 511-538 2-30 (30)
63 PF08841 DDR: Diol dehydratase 98.4 5.9E-06 1.3E-10 80.0 14.0 192 166-382 105-330 (332)
64 PRK13317 pantothenate kinase; 98.4 6.6E-05 1.4E-09 75.9 22.0 49 334-382 222-273 (277)
65 PF03107 C1_2: C1 domain; Int 98.1 1.5E-06 3.3E-11 55.4 2.2 29 444-472 1-30 (30)
66 cd02340 ZZ_NBR1_like Zinc fing 98.1 1.3E-06 2.7E-11 60.8 1.8 31 445-475 2-33 (43)
67 PF06277 EutA: Ethanolamine ut 97.9 2.7E-05 5.9E-10 82.2 8.8 88 145-237 87-178 (473)
68 KOG0680 Actin-related protein 97.9 0.00036 7.7E-09 69.1 14.2 101 143-246 93-198 (400)
69 COG4457 SrfB Uncharacterized p 97.8 0.0022 4.8E-08 69.3 20.3 83 297-385 743-848 (1014)
70 PF01869 BcrAD_BadFG: BadF/Bad 97.7 0.016 3.5E-07 59.0 24.3 72 307-381 196-271 (271)
71 TIGR00555 panK_eukar pantothen 97.7 0.0089 1.9E-07 60.2 21.6 47 333-379 229-278 (279)
72 KOG0797 Actin-related protein 97.7 0.00033 7.3E-09 73.3 11.5 121 116-246 195-321 (618)
73 cd02339 ZZ_Mind_bomb Zinc fing 97.7 2.3E-05 5E-10 54.9 1.9 30 445-474 2-33 (45)
74 PRK11031 guanosine pentaphosph 97.5 0.0035 7.7E-08 69.4 17.5 79 159-242 94-172 (496)
75 cd02340 ZZ_NBR1_like Zinc fing 97.4 9.4E-05 2E-09 51.5 2.3 39 511-552 2-41 (43)
76 KOG4236 Serine/threonine prote 97.3 2.4E-05 5.2E-10 82.1 -3.1 42 433-474 146-190 (888)
77 cd02249 ZZ Zinc finger, ZZ typ 97.2 0.00022 4.8E-09 50.7 2.4 32 444-475 1-33 (46)
78 cd02344 ZZ_HERC2 Zinc finger, 97.2 0.00032 6.8E-09 49.0 2.7 30 445-474 2-33 (45)
79 PF14574 DUF4445: Domain of un 97.2 0.034 7.4E-07 59.3 19.2 85 296-381 290-375 (412)
80 PRK10854 exopolyphosphatase; P 97.2 0.017 3.7E-07 64.4 17.8 79 159-242 99-177 (513)
81 cd02341 ZZ_ZZZ3 Zinc finger, Z 97.1 0.00028 6.1E-09 50.2 1.8 32 444-475 1-36 (48)
82 KOG0696 Serine/threonine prote 97.0 0.00016 3.5E-09 73.9 -0.3 96 433-540 46-155 (683)
83 cd02342 ZZ_UBA_plant Zinc fing 97.0 0.00031 6.8E-09 47.7 1.1 30 445-474 2-33 (43)
84 COG4819 EutA Ethanolamine util 96.9 0.0019 4.2E-08 64.2 6.6 87 146-237 90-180 (473)
85 PF02782 FGGY_C: FGGY family o 96.8 0.0024 5.1E-08 61.7 5.9 75 307-383 121-196 (198)
86 PF00130 C1_1: Phorbol esters/ 96.7 0.001 2.2E-08 49.0 2.3 42 433-474 1-45 (53)
87 cd02338 ZZ_PCMF_like Zinc fing 96.6 0.0011 2.4E-08 47.7 1.8 31 445-475 2-34 (49)
88 cd02345 ZZ_dah Zinc finger, ZZ 96.6 0.0011 2.4E-08 47.6 1.8 31 445-475 2-34 (49)
89 PF14450 FtsA: Cell division p 96.6 0.0045 9.8E-08 54.4 5.6 50 199-248 1-55 (120)
90 PF13941 MutL: MutL protein 96.5 0.011 2.5E-07 63.4 9.5 41 9-55 2-44 (457)
91 cd02334 ZZ_dystrophin Zinc fin 96.5 0.0015 3.3E-08 46.7 2.0 31 445-475 2-34 (49)
92 cd02335 ZZ_ADA2 Zinc finger, Z 96.5 0.002 4.4E-08 46.4 2.6 32 444-475 1-34 (49)
93 cd02249 ZZ Zinc finger, ZZ typ 96.5 0.0016 3.5E-08 46.3 2.1 40 511-551 2-43 (46)
94 cd02339 ZZ_Mind_bomb Zinc fing 96.5 0.0017 3.7E-08 45.6 2.0 30 511-540 2-33 (45)
95 cd02341 ZZ_ZZZ3 Zinc finger, Z 96.5 0.0017 3.7E-08 46.2 2.0 39 511-551 2-45 (48)
96 TIGR00744 ROK_glcA_fam ROK fam 96.3 0.46 1E-05 49.6 20.4 46 168-215 96-141 (318)
97 KOG0681 Actin-related protein 96.3 0.032 6.9E-07 59.5 10.6 124 119-248 92-216 (645)
98 PF00569 ZZ: Zinc finger, ZZ t 96.1 0.0019 4.1E-08 45.9 0.7 32 443-474 4-37 (46)
99 cd02343 ZZ_EF Zinc finger, ZZ 96.1 0.0033 7.1E-08 44.4 1.8 31 445-475 2-33 (48)
100 smart00842 FtsA Cell division 96.1 0.01 2.2E-07 56.7 6.0 30 157-186 157-186 (187)
101 TIGR03706 exo_poly_only exopol 96.0 0.1 2.2E-06 54.0 13.3 76 159-241 87-164 (300)
102 PRK09557 fructokinase; Reviewe 96.0 1.4 3E-05 45.6 21.7 38 169-207 96-133 (301)
103 COG0248 GppA Exopolyphosphatas 96.0 0.14 3E-06 56.1 14.5 59 159-217 91-149 (492)
104 PRK13318 pantothenate kinase; 96.0 0.15 3.2E-06 51.5 13.7 20 9-28 2-21 (258)
105 TIGR01315 5C_CHO_kinase FGGY-f 95.9 0.024 5.3E-07 63.8 8.4 83 302-386 411-493 (541)
106 PRK15027 xylulokinase; Provisi 95.8 0.021 4.5E-07 63.5 7.7 80 302-386 357-437 (484)
107 PLN02669 xylulokinase 95.8 0.026 5.7E-07 63.5 8.4 71 310-383 422-492 (556)
108 cd02335 ZZ_ADA2 Zinc finger, Z 95.8 0.0073 1.6E-07 43.5 2.4 42 511-552 2-47 (49)
109 smart00291 ZnF_ZZ Zinc-binding 95.8 0.005 1.1E-07 43.2 1.5 33 443-475 4-37 (44)
110 KOG0678 Actin-related protein 95.7 0.091 2E-06 52.6 10.5 100 144-246 107-208 (415)
111 cd02337 ZZ_CBP Zinc finger, ZZ 95.6 0.006 1.3E-07 41.9 1.4 31 444-475 1-32 (41)
112 KOG4582 Uncharacterized conser 95.6 0.0088 1.9E-07 60.5 3.0 31 443-473 152-184 (278)
113 PRK03011 butyrate kinase; Prov 95.4 1.5 3.2E-05 46.4 19.0 47 334-380 295-344 (358)
114 PRK05082 N-acetylmannosamine k 95.3 2.4 5.2E-05 43.5 20.2 49 334-382 233-287 (291)
115 COG1069 AraB Ribulose kinase [ 95.3 0.21 4.5E-06 54.0 12.2 80 302-386 399-481 (544)
116 PRK13321 pantothenate kinase; 95.2 0.36 7.7E-06 48.6 13.2 19 9-27 2-20 (256)
117 smart00291 ZnF_ZZ Zinc-binding 95.2 0.012 2.6E-07 41.3 1.8 32 510-541 5-37 (44)
118 PRK04123 ribulokinase; Provisi 95.2 0.046 9.9E-07 61.8 7.4 51 334-386 438-489 (548)
119 PRK00047 glpK glycerol kinase; 95.1 0.052 1.1E-06 60.5 7.7 51 334-386 403-453 (498)
120 PTZ00294 glycerol kinase-like 95.1 0.055 1.2E-06 60.5 7.8 51 334-386 406-456 (504)
121 KOG0681 Actin-related protein 95.1 0.016 3.5E-07 61.6 3.3 67 317-383 539-614 (645)
122 PRK00976 hypothetical protein; 95.1 4.8 0.0001 41.5 23.5 50 334-386 263-314 (326)
123 PF00130 C1_1: Phorbol esters/ 95.1 0.024 5.2E-07 41.6 3.2 45 550-599 2-46 (53)
124 TIGR01312 XylB D-xylulose kina 95.0 0.067 1.4E-06 59.5 8.0 51 334-386 390-440 (481)
125 TIGR01234 L-ribulokinase L-rib 95.0 0.063 1.4E-06 60.4 7.8 51 334-386 435-486 (536)
126 cd02342 ZZ_UBA_plant Zinc fing 94.9 0.012 2.6E-07 40.2 1.1 31 511-541 2-34 (43)
127 PRK13310 N-acetyl-D-glucosamin 94.9 4.4 9.4E-05 41.9 20.9 48 334-381 245-300 (303)
128 TIGR01311 glycerol_kin glycero 94.9 0.06 1.3E-06 60.0 7.2 51 334-386 399-449 (493)
129 TIGR02628 fuculo_kin_coli L-fu 94.8 0.07 1.5E-06 59.0 7.5 51 334-386 393-443 (465)
130 PRK10331 L-fuculokinase; Provi 94.8 0.074 1.6E-06 58.9 7.6 51 334-386 389-439 (470)
131 TIGR01314 gntK_FGGY gluconate 94.7 0.077 1.7E-06 59.3 7.5 51 334-386 401-451 (505)
132 KOG1280 Uncharacterized conser 94.7 0.02 4.2E-07 57.4 2.4 34 442-475 7-42 (381)
133 cd00029 C1 Protein kinase C co 94.7 0.017 3.6E-07 41.8 1.5 37 438-474 6-45 (50)
134 cd02344 ZZ_HERC2 Zinc finger, 94.6 0.027 5.8E-07 39.4 2.2 30 511-540 2-33 (45)
135 smart00109 C1 Protein kinase C 94.6 0.017 3.7E-07 41.5 1.3 35 440-474 8-44 (49)
136 KOG2517 Ribulose kinase and re 94.5 0.12 2.6E-06 56.1 8.0 74 312-387 391-465 (516)
137 TIGR02627 rhamnulo_kin rhamnul 94.5 0.093 2E-06 57.8 7.4 50 334-386 387-436 (454)
138 PLN02295 glycerol kinase 94.5 0.095 2.1E-06 58.7 7.6 51 334-386 412-462 (512)
139 TIGR00671 baf pantothenate kin 94.5 1.1 2.3E-05 44.8 14.2 19 10-28 2-20 (243)
140 cd02338 ZZ_PCMF_like Zinc fing 94.3 0.026 5.5E-07 40.6 1.7 33 511-543 2-36 (49)
141 PF01968 Hydantoinase_A: Hydan 94.2 0.05 1.1E-06 55.9 4.4 69 308-380 215-284 (290)
142 cd02345 ZZ_dah Zinc finger, ZZ 94.1 0.023 5E-07 40.9 1.1 32 511-542 2-35 (49)
143 PRK10939 autoinducer-2 (AI-2) 94.1 0.12 2.6E-06 58.0 7.4 51 334-386 409-459 (520)
144 KOG0954 PHD finger protein [Ge 94.1 0.035 7.6E-07 61.0 2.9 133 442-601 270-415 (893)
145 COG3426 Butyrate kinase [Energ 94.0 0.66 1.4E-05 45.9 11.1 50 332-381 294-346 (358)
146 KOG2531 Sugar (pentulose and h 93.9 0.2 4.4E-06 52.6 8.0 54 327-382 435-488 (545)
147 PTZ00288 glucokinase 1; Provis 93.9 0.57 1.2E-05 50.2 11.6 21 6-26 25-45 (405)
148 PF00569 ZZ: Zinc finger, ZZ t 93.9 0.019 4.1E-07 40.8 0.3 31 510-540 5-37 (46)
149 PRK10640 rhaB rhamnulokinase; 93.8 0.15 3.3E-06 56.3 7.5 50 334-386 375-424 (471)
150 PRK12408 glucokinase; Provisio 93.6 3 6.6E-05 43.8 16.5 41 168-208 107-157 (336)
151 COG1521 Pantothenate kinase ty 93.5 1.2 2.6E-05 44.1 12.2 50 303-354 181-230 (251)
152 PF02541 Ppx-GppA: Ppx/GppA ph 93.4 0.18 3.8E-06 51.8 6.6 76 161-241 76-151 (285)
153 KOG0957 PHD finger protein [Ge 93.4 0.038 8.3E-07 57.8 1.6 130 445-599 121-275 (707)
154 cd02343 ZZ_EF Zinc finger, ZZ 93.3 0.04 8.7E-07 39.0 1.1 34 511-544 2-36 (48)
155 PRK09585 anmK anhydro-N-acetyl 93.1 0.84 1.8E-05 48.0 11.1 67 312-382 267-337 (365)
156 PLN02666 5-oxoprolinase 92.9 1.7 3.6E-05 53.4 14.5 79 301-383 454-534 (1275)
157 COG1070 XylB Sugar (pentulose 92.9 0.5 1.1E-05 52.7 9.6 52 333-385 400-451 (502)
158 cd02334 ZZ_dystrophin Zinc fin 92.8 0.055 1.2E-06 38.8 1.2 32 511-542 2-35 (49)
159 cd02337 ZZ_CBP Zinc finger, ZZ 92.5 0.067 1.4E-06 36.8 1.3 30 511-541 2-32 (41)
160 PRK09698 D-allose kinase; Prov 92.4 7.4 0.00016 40.1 17.1 49 334-382 236-295 (302)
161 KOG1280 Uncharacterized conser 92.3 0.069 1.5E-06 53.7 1.6 60 510-569 9-89 (381)
162 COG1548 Predicted transcriptio 92.2 0.95 2.1E-05 44.1 9.1 71 128-216 76-149 (330)
163 cd00029 C1 Protein kinase C co 91.9 0.062 1.3E-06 38.8 0.7 36 559-599 11-46 (50)
164 PF07318 DUF1464: Protein of u 91.2 1.1 2.4E-05 46.2 9.0 73 309-386 239-318 (343)
165 KOG0956 PHD finger protein AF1 90.9 0.14 2.9E-06 56.1 2.2 125 445-599 7-157 (900)
166 TIGR03123 one_C_unchar_1 proba 90.9 1.6 3.4E-05 45.1 9.8 21 197-217 128-148 (318)
167 PRK00292 glk glucokinase; Prov 90.7 23 0.0005 36.8 20.1 43 167-209 88-140 (316)
168 smart00109 C1 Protein kinase C 90.6 0.088 1.9E-06 37.7 0.3 37 558-600 10-46 (49)
169 PF03702 UPF0075: Uncharacteri 90.3 0.84 1.8E-05 48.1 7.4 73 308-383 261-337 (364)
170 COG2377 Predicted molecular ch 90.1 2.7 5.7E-05 43.6 10.5 53 332-384 288-344 (371)
171 PRK14878 UGMP family protein; 90.0 12 0.00025 39.2 15.7 34 334-367 241-276 (323)
172 cd02336 ZZ_RSC8 Zinc finger, Z 89.8 0.19 4.1E-06 35.3 1.4 29 511-539 2-31 (45)
173 PRK09605 bifunctional UGMP fam 89.2 43 0.00094 37.7 22.0 53 334-386 245-302 (535)
174 COG4020 Uncharacterized protei 88.7 25 0.00055 34.4 16.5 68 315-385 249-319 (332)
175 PF14450 FtsA: Cell division p 88.7 0.11 2.4E-06 45.6 -0.4 21 9-29 1-21 (120)
176 PRK14101 bifunctional glucokin 88.2 18 0.00039 41.8 17.0 22 165-186 101-122 (638)
177 KOG1169 Diacylglycerol kinase 87.7 0.2 4.2E-06 55.4 0.6 91 510-602 45-150 (634)
178 TIGR00329 gcp_kae1 metallohydr 87.0 20 0.00043 37.1 15.0 45 317-366 246-292 (305)
179 PRK09604 UGMP family protein; 85.8 49 0.0011 34.6 28.6 53 334-386 254-311 (332)
180 TIGR03722 arch_KAE1 universal 85.6 49 0.0011 34.5 19.3 43 334-376 242-289 (322)
181 PLN02920 pantothenate kinase 1 85.4 17 0.00038 38.4 13.3 50 333-382 296-351 (398)
182 KOG0694 Serine/threonine prote 85.0 0.19 4.1E-06 55.6 -1.2 101 439-540 165-275 (694)
183 KOG2807 RNA polymerase II tran 84.8 0.49 1.1E-05 47.3 1.6 31 510-540 331-362 (378)
184 COG0554 GlpK Glycerol kinase [ 84.6 3 6.5E-05 44.8 7.3 81 301-386 371-452 (499)
185 KOG0956 PHD finger protein AF1 84.4 0.72 1.6E-05 50.7 2.8 97 439-546 44-162 (900)
186 KOG4582 Uncharacterized conser 84.4 0.42 9.2E-06 48.4 1.0 31 511-541 154-186 (278)
187 COG2971 Predicted N-acetylgluc 84.4 51 0.0011 33.6 21.8 67 312-386 227-294 (301)
188 PF08735 DUF1786: Putative pyr 84.3 11 0.00023 37.4 10.6 94 140-238 111-206 (254)
189 PF13832 zf-HC5HC2H_2: PHD-zin 84.1 1.1 2.5E-05 38.4 3.5 76 512-598 3-87 (110)
190 KOG1169 Diacylglycerol kinase 83.8 0.95 2.1E-05 50.2 3.4 153 445-603 46-216 (634)
191 TIGR03723 bact_gcp putative gl 83.5 43 0.00094 34.8 15.5 70 304-378 233-308 (314)
192 TIGR03281 methan_mark_12 putat 82.3 7.8 0.00017 39.2 8.8 49 335-386 263-314 (326)
193 smart00249 PHD PHD zinc finger 82.1 1.8 3.9E-05 30.1 3.3 32 512-543 2-34 (47)
194 TIGR00622 ssl1 transcription f 82.0 2.6 5.7E-05 35.9 4.7 31 510-540 56-98 (112)
195 COG1940 NagC Transcriptional r 81.7 13 0.00028 38.6 11.0 36 172-207 108-143 (314)
196 KOG0696 Serine/threonine prote 81.7 0.35 7.5E-06 50.3 -0.8 43 432-474 110-155 (683)
197 COG5141 PHD zinc finger-contai 81.1 0.92 2E-05 47.9 2.0 127 446-599 196-336 (669)
198 KOG4236 Serine/threonine prote 81.1 0.18 4E-06 53.9 -3.1 42 433-474 268-312 (888)
199 PTZ00340 O-sialoglycoprotein e 81.0 77 0.0017 33.3 21.6 208 142-372 70-302 (345)
200 TIGR01319 glmL_fam conserved h 80.4 50 0.0011 35.8 14.6 60 156-215 193-267 (463)
201 PF13832 zf-HC5HC2H_2: PHD-zin 80.3 1.6 3.5E-05 37.5 3.0 85 445-541 2-88 (110)
202 PF03630 Fumble: Fumble ; Int 77.7 12 0.00025 39.3 8.9 49 333-381 286-340 (341)
203 COG0145 HyuA N-methylhydantoin 77.4 2.9 6.3E-05 47.8 4.7 43 174-217 256-298 (674)
204 PF00480 ROK: ROK family; Int 77.0 16 0.00035 34.1 9.1 43 170-214 92-134 (179)
205 PF02543 CmcH_NodU: Carbamoylt 76.8 11 0.00023 40.0 8.5 83 300-386 132-216 (360)
206 COG2192 Predicted carbamoyl tr 76.8 1.3E+02 0.0028 33.4 22.9 82 300-386 255-338 (555)
207 KOG0955 PHD finger protein BR1 76.6 2.3 5E-05 50.4 3.7 133 441-599 217-363 (1051)
208 PF07754 DUF1610: Domain of un 76.4 2.1 4.5E-05 25.5 1.7 20 512-531 1-24 (24)
209 KOG2708 Predicted metalloprote 76.2 45 0.00097 32.3 11.3 75 301-381 225-302 (336)
210 PRK00047 glpK glycerol kinase; 75.7 2.6 5.5E-05 47.1 3.7 24 1-26 1-24 (498)
211 KOG2807 RNA polymerase II tran 75.7 1.4 3E-05 44.2 1.4 80 509-599 276-363 (378)
212 COG0533 QRI7 Metal-dependent p 75.3 1.1E+02 0.0024 31.9 19.2 224 119-366 42-295 (342)
213 smart00732 YqgFc Likely ribonu 75.1 2.7 5.9E-05 35.0 2.9 19 8-26 2-20 (99)
214 TIGR00143 hypF [NiFe] hydrogen 75.0 8.3 0.00018 44.7 7.6 49 334-382 658-711 (711)
215 PTZ00297 pantothenate kinase; 73.2 2.7E+02 0.0059 35.5 26.5 49 333-381 1390-1444(1452)
216 PF03652 UPF0081: Uncharacteri 72.7 3.7 7.9E-05 36.8 3.2 22 7-28 1-22 (135)
217 KOG0193 Serine/threonine prote 72.2 1.8 3.8E-05 47.7 1.2 46 429-474 175-220 (678)
218 PF00628 PHD: PHD-finger; Int 71.5 4.1 8.9E-05 29.3 2.7 34 511-544 1-35 (51)
219 PTZ00107 hexokinase; Provision 70.9 41 0.00088 36.9 11.3 37 155-191 193-231 (464)
220 COG5026 Hexokinase [Carbohydra 70.9 82 0.0018 33.8 12.8 80 159-238 184-294 (466)
221 PLN02405 hexokinase 70.2 43 0.00093 37.1 11.3 35 156-190 205-241 (497)
222 PLN02362 hexokinase 70.0 45 0.00098 37.0 11.4 35 156-190 205-241 (509)
223 PF00370 FGGY_N: FGGY family o 69.6 4.8 0.0001 40.1 3.7 20 8-27 1-20 (245)
224 KOG0457 Histone acetyltransfer 69.4 2.4 5.3E-05 44.5 1.5 34 442-475 13-48 (438)
225 PLN02914 hexokinase 68.5 42 0.00092 37.0 10.8 35 156-190 205-241 (490)
226 COG1070 XylB Sugar (pentulose 68.4 5.4 0.00012 44.5 4.1 20 8-27 5-24 (502)
227 KOG4286 Dystrophin-like protei 68.2 2.6 5.6E-05 47.1 1.4 43 443-486 603-647 (966)
228 PRK13311 N-acetyl-D-glucosamin 68.0 49 0.0011 33.1 10.6 37 170-207 97-133 (256)
229 KOG1385 Nucleoside phosphatase 67.5 12 0.00026 39.5 5.9 20 196-215 212-231 (453)
230 KOG1512 PHD Zn-finger protein 66.6 1.8 3.9E-05 42.4 -0.1 69 522-598 278-346 (381)
231 COG4012 Uncharacterized protei 65.9 10 0.00022 37.3 4.8 73 198-277 2-97 (342)
232 COG2888 Predicted Zn-ribbon RN 65.9 3.2 7E-05 30.6 1.1 21 510-532 39-59 (61)
233 KOG1701 Focal adhesion adaptor 65.7 1.4 3E-05 46.0 -1.1 30 445-474 276-305 (468)
234 KOG2707 Predicted metalloprote 64.2 1.9E+02 0.0041 30.2 20.2 220 125-358 83-329 (405)
235 COG5151 SSL1 RNA polymerase II 63.7 2.3 5E-05 42.3 0.0 86 442-539 307-404 (421)
236 KOG1244 Predicted transcriptio 60.9 3.5 7.7E-05 40.3 0.7 98 443-567 224-330 (336)
237 PF14446 Prok-RING_1: Prokaryo 60.4 5.2 0.00011 29.2 1.3 32 510-541 6-39 (54)
238 PF13831 PHD_2: PHD-finger; PD 59.8 2.3 5E-05 28.3 -0.5 23 522-544 3-25 (36)
239 PF10367 Vps39_2: Vacuolar sor 59.1 7.9 0.00017 32.8 2.6 32 559-598 78-109 (109)
240 KOG2996 Rho guanine nucleotide 58.9 2.5 5.4E-05 45.8 -0.7 43 432-474 523-568 (865)
241 PRK07058 acetate kinase; Provi 58.3 49 0.0011 35.3 8.6 47 309-359 297-344 (396)
242 PF02685 Glucokinase: Glucokin 58.0 1E+02 0.0022 32.1 10.9 82 167-249 88-181 (316)
243 COG2441 Predicted butyrate kin 57.9 32 0.00069 34.3 6.6 54 333-386 272-335 (374)
244 cd06007 R3H_DEXH_helicase R3H 57.2 38 0.00082 25.4 5.5 29 145-173 16-44 (59)
245 PF00349 Hexokinase_1: Hexokin 57.0 16 0.00036 35.2 4.6 31 159-189 171-204 (206)
246 PRK13329 pantothenate kinase; 56.5 2.2E+02 0.0047 28.5 12.7 70 303-382 176-245 (249)
247 PLN02596 hexokinase-like 56.1 1.4E+02 0.003 33.1 11.9 53 156-212 205-259 (490)
248 KOG1244 Predicted transcriptio 56.0 4.3 9.3E-05 39.7 0.4 86 510-603 225-318 (336)
249 TIGR02707 butyr_kinase butyrat 56.0 37 0.00079 35.9 7.3 67 310-379 272-341 (351)
250 COG0816 Predicted endonuclease 54.4 12 0.00027 33.6 3.0 22 7-28 2-23 (141)
251 KOG1170 Diacylglycerol kinase 54.2 15 0.00032 41.8 4.1 42 558-603 117-158 (1099)
252 PRK10331 L-fuculokinase; Provi 54.0 10 0.00022 41.9 3.0 20 8-27 3-22 (470)
253 KOG0797 Actin-related protein 53.9 4.7 0.0001 43.3 0.3 52 334-385 526-591 (618)
254 PRK00109 Holliday junction res 53.8 13 0.00028 33.4 3.1 21 7-27 4-24 (138)
255 KOG0954 PHD finger protein [Ge 53.5 8.5 0.00018 43.2 2.2 31 510-541 272-306 (893)
256 PRK14890 putative Zn-ribbon RN 53.4 7.9 0.00017 28.7 1.3 19 512-532 39-57 (59)
257 TIGR00622 ssl1 transcription f 53.3 17 0.00038 31.0 3.5 87 510-597 2-97 (112)
258 COG4012 Uncharacterized protei 53.2 97 0.0021 30.8 8.9 70 174-248 207-276 (342)
259 KOG4301 Beta-dystrobrevin [Cyt 53.0 5 0.00011 40.7 0.3 34 441-474 238-273 (434)
260 PRK13331 pantothenate kinase; 52.8 19 0.00042 35.9 4.4 28 1-28 1-28 (251)
261 cd02336 ZZ_RSC8 Zinc finger, Z 52.4 7.8 0.00017 27.3 1.1 31 444-474 1-32 (45)
262 KOG1369 Hexokinase [Carbohydra 51.8 1.2E+02 0.0027 33.1 10.5 62 152-217 187-251 (474)
263 PRK04123 ribulokinase; Provisi 51.8 14 0.00031 41.7 3.8 18 8-25 4-21 (548)
264 KOG0957 PHD finger protein [Ge 51.6 4.1 8.8E-05 43.3 -0.6 94 441-544 168-278 (707)
265 PTZ00294 glycerol kinase-like 51.5 13 0.00029 41.4 3.5 20 8-27 3-22 (504)
266 KOG0695 Serine/threonine prote 51.1 4.9 0.00011 40.9 -0.1 43 432-474 130-175 (593)
267 KOG0457 Histone acetyltransfer 51.1 8.6 0.00019 40.6 1.7 47 510-556 15-65 (438)
268 PRK10939 autoinducer-2 (AI-2) 50.7 14 0.0003 41.5 3.4 20 8-27 4-23 (520)
269 TIGR02628 fuculo_kin_coli L-fu 50.5 14 0.0003 40.8 3.3 20 8-27 2-21 (465)
270 PF10571 UPF0547: Uncharacteri 50.2 9.7 0.00021 23.3 1.1 23 511-533 2-24 (26)
271 PRK15027 xylulokinase; Provisi 48.3 15 0.00032 40.8 3.2 19 9-27 2-20 (484)
272 PHA00626 hypothetical protein 48.0 14 0.00031 26.9 1.9 22 512-535 14-35 (59)
273 PF09297 zf-NADH-PPase: NADH p 47.9 9.6 0.00021 24.5 0.9 23 509-531 3-29 (32)
274 COG5114 Histone acetyltransfer 47.9 7.4 0.00016 39.0 0.6 74 443-517 5-83 (432)
275 KOG3623 Homeobox transcription 47.6 4.5 9.7E-05 45.2 -1.0 28 485-519 933-960 (1007)
276 TIGR01314 gntK_FGGY gluconate 47.6 16 0.00034 40.9 3.2 20 8-27 1-20 (505)
277 TIGR01234 L-ribulokinase L-rib 47.4 17 0.00038 40.9 3.6 18 8-25 2-19 (536)
278 PLN02295 glycerol kinase 46.5 17 0.00036 40.7 3.3 19 8-26 1-19 (512)
279 TIGR01311 glycerol_kin glycero 46.5 17 0.00038 40.4 3.3 20 8-27 2-21 (493)
280 KOG0825 PHD Zn-finger protein 46.3 11 0.00024 42.6 1.7 35 441-475 213-249 (1134)
281 PF13909 zf-H2C2_5: C2H2-type 45.8 9.6 0.00021 22.4 0.7 10 458-467 1-10 (24)
282 PF14574 DUF4445: Domain of un 44.7 58 0.0012 35.1 6.7 45 307-351 56-100 (412)
283 smart00249 PHD PHD zinc finger 44.6 15 0.00032 25.3 1.6 30 446-475 2-32 (47)
284 TIGR01315 5C_CHO_kinase FGGY-f 44.4 19 0.00041 40.6 3.3 18 9-26 2-19 (541)
285 cd02640 R3H_NRF R3H domain of 44.2 86 0.0019 23.6 5.7 30 145-174 17-46 (60)
286 PF13842 Tnp_zf-ribbon_2: DDE_ 43.9 20 0.00044 23.1 2.0 28 561-594 2-29 (32)
287 COG5026 Hexokinase [Carbohydra 43.9 1E+02 0.0022 33.1 8.1 29 195-223 73-102 (466)
288 PRK00039 ruvC Holliday junctio 43.8 21 0.00046 33.1 2.9 19 7-25 2-20 (164)
289 PF00628 PHD: PHD-finger; Int 42.9 26 0.00057 25.0 2.8 30 446-475 2-32 (51)
290 KOG4443 Putative transcription 42.4 11 0.00023 42.0 0.8 31 445-475 70-101 (694)
291 PF08746 zf-RING-like: RING-li 42.2 11 0.00025 26.1 0.7 27 446-473 1-29 (43)
292 PRK04023 DNA polymerase II lar 41.9 18 0.00039 42.6 2.5 20 510-531 627-646 (1121)
293 TIGR01384 TFS_arch transcripti 41.6 70 0.0015 26.9 5.6 25 511-535 2-28 (104)
294 PF07282 OrfB_Zn_ribbon: Putat 41.5 43 0.00093 25.7 3.9 36 555-594 24-59 (69)
295 PF07975 C1_4: TFIIH C1-like d 41.4 7.7 0.00017 28.1 -0.3 26 446-471 2-35 (51)
296 KOG4286 Dystrophin-like protei 40.7 9 0.0002 43.0 -0.0 35 510-544 604-640 (966)
297 TIGR01319 glmL_fam conserved h 39.3 1.8E+02 0.0039 31.7 9.4 49 202-251 1-49 (463)
298 COG5151 SSL1 RNA polymerase II 39.3 8.2 0.00018 38.6 -0.6 86 510-599 309-406 (421)
299 PLN02669 xylulokinase 38.8 29 0.00063 39.3 3.6 22 6-27 7-28 (556)
300 PRK11199 tyrA bifunctional cho 38.3 2.9E+02 0.0062 29.5 10.9 16 235-250 13-28 (374)
301 KOG1512 PHD Zn-finger protein 37.3 13 0.00027 36.8 0.4 70 456-542 278-348 (381)
302 PRK04023 DNA polymerase II lar 37.2 32 0.00069 40.6 3.5 23 510-534 652-674 (1121)
303 smart00396 ZnF_UBR1 Putative z 37.0 27 0.00058 27.3 2.1 54 514-568 2-58 (71)
304 PRK14714 DNA polymerase II lar 35.8 31 0.00067 41.8 3.2 15 300-314 500-514 (1337)
305 PRK13320 pantothenate kinase; 35.8 42 0.00091 33.4 3.8 20 9-28 4-23 (244)
306 PF14569 zf-UDP: Zinc-binding 35.7 14 0.00029 29.1 0.2 46 509-567 9-59 (80)
307 KOG4443 Putative transcription 35.6 15 0.00033 40.9 0.6 75 512-599 21-101 (694)
308 PF02075 RuvC: Crossover junct 35.4 58 0.0012 29.7 4.4 24 9-32 1-26 (149)
309 COG0837 Glk Glucokinase [Carbo 35.4 5.1E+02 0.011 26.6 11.4 85 166-250 91-186 (320)
310 TIGR03655 anti_R_Lar restricti 35.3 50 0.0011 24.0 3.2 46 561-606 3-51 (53)
311 PF14803 Nudix_N_2: Nudix N-te 35.3 23 0.00051 23.2 1.3 9 523-531 22-30 (34)
312 PRK00180 acetate kinase A/prop 35.2 1.1E+02 0.0023 33.0 6.9 48 309-359 301-349 (402)
313 KOG0694 Serine/threonine prote 34.6 9.6 0.00021 42.8 -1.0 88 510-602 170-279 (694)
314 COG4126 Hydantoin racemase [Am 34.2 1.5E+02 0.0032 28.9 6.8 40 143-188 70-109 (230)
315 KOG1705 Uncharacterized conser 33.8 30 0.00065 27.9 1.9 34 488-535 6-39 (110)
316 KOG2186 Cell growth-regulating 33.5 16 0.00035 35.6 0.5 32 510-541 4-54 (276)
317 cd00350 rubredoxin_like Rubred 33.5 37 0.00081 21.9 2.0 11 524-534 2-12 (33)
318 PLN02902 pantothenate kinase 33.0 5.8E+02 0.013 30.4 12.6 49 333-382 345-400 (876)
319 KOG0193 Serine/threonine prote 32.2 19 0.00042 40.0 0.8 31 510-540 190-220 (678)
320 cd02641 R3H_Smubp-2_like R3H d 31.9 2E+02 0.0042 21.6 6.0 30 145-174 17-46 (60)
321 PF12647 RNHCP: RNHCP domain; 31.3 56 0.0012 26.8 3.1 28 509-536 4-37 (92)
322 KOG2517 Ribulose kinase and re 31.2 67 0.0015 35.5 4.7 18 8-25 7-24 (516)
323 PF00349 Hexokinase_1: Hexokin 30.9 2.7E+02 0.0058 26.9 8.4 25 195-219 61-85 (206)
324 PF10367 Vps39_2: Vacuolar sor 30.6 38 0.00083 28.5 2.3 31 443-473 78-108 (109)
325 TIGR00250 RNAse_H_YqgF RNAse H 30.4 34 0.00073 30.4 1.9 18 10-27 1-18 (130)
326 PRK13326 pantothenate kinase; 30.0 56 0.0012 32.9 3.6 21 8-28 7-27 (262)
327 PF07191 zinc-ribbons_6: zinc- 29.9 20 0.00044 27.7 0.3 53 511-570 3-61 (70)
328 COG0248 GppA Exopolyphosphatas 29.2 4.4E+02 0.0095 29.3 10.6 73 197-285 3-75 (492)
329 PF12773 DZR: Double zinc ribb 29.1 62 0.0013 23.0 2.8 20 510-529 30-49 (50)
330 PF02148 zf-UBP: Zn-finger in 28.7 40 0.00087 25.5 1.8 53 512-568 1-58 (63)
331 KOG2186 Cell growth-regulating 28.2 17 0.00037 35.5 -0.4 17 588-606 43-59 (276)
332 PRK14714 DNA polymerase II lar 28.2 46 0.001 40.4 3.0 10 560-569 710-719 (1337)
333 cd02639 R3H_RRM R3H domain of 28.1 1.5E+02 0.0033 22.3 4.8 30 145-174 17-46 (60)
334 smart00659 RPOLCX RNA polymera 28.0 37 0.0008 23.7 1.4 23 510-532 3-28 (44)
335 cd02646 R3H_G-patch R3H domain 27.8 1.6E+02 0.0035 21.8 4.9 28 145-173 16-43 (58)
336 KOG3507 DNA-directed RNA polym 27.6 30 0.00065 25.5 0.8 24 510-533 21-47 (62)
337 TIGR00016 ackA acetate kinase. 27.0 1.8E+02 0.0039 31.3 6.9 47 310-359 306-353 (404)
338 KOG4367 Predicted Zn-finger pr 27.0 31 0.00067 36.2 1.2 95 444-550 163-259 (699)
339 PF08392 FAE1_CUT1_RppA: FAE1/ 26.7 1.4E+02 0.003 30.4 5.7 45 315-359 85-130 (290)
340 PRK09710 lar restriction allev 26.5 88 0.0019 23.8 3.2 53 560-614 7-60 (64)
341 PF04848 Pox_A22: Poxvirus A22 26.2 1E+02 0.0022 27.8 4.2 19 7-25 1-19 (143)
342 smart00661 RPOL9 RNA polymeras 26.0 54 0.0012 23.5 2.0 24 511-534 2-31 (52)
343 PF00091 Tubulin: Tubulin/FtsZ 25.6 99 0.0022 30.0 4.5 48 311-362 104-157 (216)
344 KOG3116 Predicted C3H1-type Zn 25.6 28 0.00061 30.9 0.5 34 560-602 28-61 (177)
345 PLN02377 3-ketoacyl-CoA syntha 25.3 2.1E+02 0.0045 31.8 7.3 57 305-362 164-221 (502)
346 PF13941 MutL: MutL protein 24.9 1.5E+02 0.0033 32.4 6.0 47 199-245 2-49 (457)
347 PF11781 RRN7: RNA polymerase 23.6 39 0.00085 22.4 0.8 22 510-532 9-34 (36)
348 PF00301 Rubredoxin: Rubredoxi 23.1 53 0.0011 23.4 1.4 44 523-569 1-44 (47)
349 KOG4349 Uncharacterized conser 23.0 69 0.0015 27.5 2.3 36 635-670 73-108 (143)
350 PF03309 Pan_kinase: Type III 23.0 98 0.0021 29.8 3.8 21 9-29 1-21 (206)
351 KOG1044 Actin-binding LIM Zn-f 22.8 31 0.00067 37.9 0.3 77 441-539 131-220 (670)
352 PF01363 FYVE: FYVE zinc finge 22.8 75 0.0016 24.3 2.4 36 558-599 8-43 (69)
353 PRK13324 pantothenate kinase; 22.3 94 0.002 31.2 3.6 20 9-28 2-21 (258)
354 PRK13321 pantothenate kinase; 22.0 3.3E+02 0.0071 27.2 7.5 46 199-245 2-47 (256)
355 PF05378 Hydant_A_N: Hydantoin 22.0 1.1E+02 0.0025 28.6 3.9 27 10-43 2-30 (176)
356 KOG1701 Focal adhesion adaptor 21.8 30 0.00065 36.5 -0.0 32 442-473 301-339 (468)
357 COG1645 Uncharacterized Zn-fin 21.7 55 0.0012 28.9 1.5 21 510-531 29-52 (131)
358 TIGR03394 indol_phenyl_DC indo 21.5 5.2E+02 0.011 29.0 9.8 64 143-211 14-78 (535)
359 TIGR01053 LSD1 zinc finger dom 21.3 55 0.0012 21.0 1.1 22 445-466 3-28 (31)
360 COG2069 CdhD CO dehydrogenase/ 21.2 1.4E+02 0.003 30.2 4.3 66 145-211 252-327 (403)
361 KOG0695 Serine/threonine prote 21.2 29 0.00063 35.5 -0.3 56 547-607 129-184 (593)
362 KOG1011 Neurotransmitter relea 21.2 23 0.00049 39.2 -1.1 43 432-474 172-217 (1283)
363 PRK07220 DNA topoisomerase I; 20.9 81 0.0018 37.1 3.2 30 560-589 636-665 (740)
364 KOG4301 Beta-dystrobrevin [Cyt 20.8 33 0.00071 35.0 0.0 31 510-540 241-273 (434)
365 TIGR03393 indolpyr_decarb indo 20.8 3.2E+02 0.007 30.7 8.0 62 144-211 16-78 (539)
366 COG1996 RPC10 DNA-directed RNA 20.8 55 0.0012 23.5 1.1 24 510-533 7-34 (49)
367 KOG4239 Ras GTPase effector RA 20.7 28 0.00061 35.1 -0.5 47 547-603 50-101 (348)
368 PLN02854 3-ketoacyl-CoA syntha 20.6 2E+02 0.0044 32.1 6.0 54 306-359 181-235 (521)
369 PF13240 zinc_ribbon_2: zinc-r 20.1 59 0.0013 19.2 1.0 20 512-531 2-21 (23)
370 TIGR02707 butyr_kinase butyrat 20.0 1.7E+02 0.0036 31.0 5.1 28 199-226 2-29 (351)
371 TIGR02627 rhamnulo_kin rhamnul 20.0 50 0.0011 36.3 1.3 17 10-26 1-17 (454)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-76 Score=576.16 Aligned_cols=404 Identities=64% Similarity=0.989 Sum_probs=389.8
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSVQ 87 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (675)
.+||||+||||++++++++|.++++.|.+|+|.+||.|+|.++++++|+.|..+...||++++++.||++|+.++++.++
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEEeCCCCCceEEEEEc-CceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 88 EDIKLWPFKVIAGPNDKPMIAVKYK-GGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
++++.+||+++ +.++++.++++.. +..+.++|+++.+|+|..+++.|+.+++..+.+.|+|||+||++.||++.++|-
T Consensus 117 ~Dik~~Pfkvv-~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 117 KDIKFLPFKVV-NKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred hhhhcCceEEE-cCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccc
Confidence 99999999998 8899999999987 447889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
..|||+++++|+||+|||++|+++... .+.++||+|+||||||+|++.+.++.|+++++.++..+||.+||+++++++.
T Consensus 196 tIAgLnV~RIiNePTaAAIAYGLDKk~-gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 196 TIAGLNVVRIINEPTAAAIAYGLDKKD-GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred eeccceEEEeecCccHHHHHhcccccC-CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHH
Confidence 999999999999999999999998774 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLR 326 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~ 326 (675)
+-|+++.+.+++.+.++..+|++++|++|+.||++.+..+.|+++++|.|++..+||..||++-.+++..++..++++|+
T Consensus 275 klykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~ 354 (663)
T KOG0100|consen 275 KLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLE 354 (663)
T ss_pred HHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccCCCC
Q 005824 327 NGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSKYNS 406 (675)
Q Consensus 327 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~~~~ 406 (675)
++++...+|+.|+|+||++|+|.+|+.|++.|.|++.....||++|||.|||.+|..++|. ....++++.|++|++.|
T Consensus 355 Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~pLtlG 432 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNPLTLG 432 (663)
T ss_pred hcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeeccccce
Confidence 9999999999999999999999999999999999999999999999999999999999995 56789999999999988
Q ss_pred C---------CCcCCccc
Q 005824 407 S---------LEPKTTTS 415 (675)
Q Consensus 407 ~---------~~~~~~~~ 415 (675)
. .+||||..
T Consensus 433 IETvGGVMTklI~RNTvi 450 (663)
T KOG0100|consen 433 IETVGGVMTKLIPRNTVI 450 (663)
T ss_pred eeeecceeeccccCCccc
Confidence 4 36666553
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=7.4e-65 Score=572.89 Aligned_cols=420 Identities=66% Similarity=1.024 Sum_probs=386.6
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSVQ 87 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (675)
.+|||||||||++||++.+|.++++++..|++.+||+|+|.++++++|+.|..+...+|.++++++||++|+.++++.++
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~ 84 (653)
T PTZ00009 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQ 84 (653)
T ss_pred cEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 005824 88 EDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGA 167 (675)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~ 167 (675)
...+.+||.+..+.++...+.+.+.+....++|+++++++|++|++.++++++..+.++|||||++|++.||+++++|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~ 164 (653)
T PTZ00009 85 SDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGT 164 (653)
T ss_pred hhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHHH
Confidence 88889999998888899999998888778999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 005824 168 MAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQ 247 (675)
Q Consensus 168 ~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~ 247 (675)
.||++.+++++||+|||++|+.......+.+++|+|+||||+|++++++.++.++++++.++..+||++||+.|++++.+
T Consensus 165 ~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~ 244 (653)
T PTZ00009 165 IAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQ 244 (653)
T ss_pred HcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999886654456889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-cCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHH
Q 005824 248 EFKRKK-KKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLR 326 (675)
Q Consensus 248 ~~~~~~-~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~ 326 (675)
+|..++ +.++..+++.+.+|+.+||++|+.||.+....+.++.+.++.++.+.|||++|+++++++++++.+.++++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 324 (653)
T PTZ00009 245 DFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLK 324 (653)
T ss_pred HHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998766 3567778999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred cCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccCCCC
Q 005824 327 NGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSKYNS 406 (675)
Q Consensus 327 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~~~~ 406 (675)
+++++..+|+.|+|+||+||+|.|++.|++.|++.++....||+++||.|||++|+.+++...++++++.+.|++|+++|
T Consensus 325 ~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slg 404 (653)
T PTZ00009 325 DAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLG 404 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccccC
Confidence 99999899999999999999999999999999767788889999999999999999999866678889999999999998
Q ss_pred CCCcCCc--ccc-cccCCCCcccc
Q 005824 407 SLEPKTT--TSF-AAQDLPSRAGH 427 (675)
Q Consensus 407 ~~~~~~~--~~~-~~~~~p~~i~h 427 (675)
.....+. ..+ ++..+|.+..+
T Consensus 405 i~~~~~~~~~ii~~~t~iP~~~~~ 428 (653)
T PTZ00009 405 LETAGGVMTKLIERNTTIPTKKSQ 428 (653)
T ss_pred ccccCCceEEEEeCCCcCCcccee
Confidence 6432211 122 45666765443
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.1e-64 Score=559.84 Aligned_cols=391 Identities=44% Similarity=0.739 Sum_probs=362.8
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSVQ 87 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (675)
.+||||||||||++|++.++.++++++..|.+.+||+|+|.++++++|..|..+...+|.++++++||++|+.++++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 005824 88 EDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGA 167 (675)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~ 167 (675)
..++.+||.+..+.++...+.. ..+..++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 9999999999877776655442 2357899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 005824 168 MAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQ 247 (675)
Q Consensus 168 ~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~ 247 (675)
.|||+.+++++||+|||++|+.... .+.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++++.+
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~ 262 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHH
Confidence 9999999999999999999997654 56899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCC----ceeEEEEeHHHHHHHHHHHHHHHHHHHHH
Q 005824 248 EFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEG----IDFSSVITRARFEELNMDLFRKCIKHVDM 323 (675)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~~ 323 (675)
+|..+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++...|||++|+++++++++++...+++
T Consensus 263 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~ 342 (657)
T PTZ00186 263 EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQ 342 (657)
T ss_pred HHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999999999999999988888765432 35788999999999999999999999999
Q ss_pred HHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccC
Q 005824 324 CLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSK 403 (675)
Q Consensus 324 ~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~ 403 (675)
+|++++++..+|+.|+|+||+||+|.|++.|++.| +.++....||++|||.|||++|+.+++. ++++.+.|++|+
T Consensus 343 ~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~ 417 (657)
T PTZ00186 343 CMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPL 417 (657)
T ss_pred HHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeeccc
Confidence 99999999999999999999999999999999999 5666788899999999999999999873 578999999999
Q ss_pred CCCCC
Q 005824 404 YNSSL 408 (675)
Q Consensus 404 ~~~~~ 408 (675)
++|..
T Consensus 418 slgie 422 (657)
T PTZ00186 418 SLGIE 422 (657)
T ss_pred cccce
Confidence 99864
No 4
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.8e-62 Score=552.92 Aligned_cols=409 Identities=45% Similarity=0.749 Sum_probs=369.6
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeC-CceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTK-KERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+|||||||||+++|++.+|.++++++..|++.+||+|+|.+ +++++|..|..+...+|+++++++||++|+.++++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 689999999999999999999999999999999999999985 4899999999999999999999999999999999988
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+.....+||.+..+.++...+.+. +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 888889999998777776665542 4689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+++++||+|||++|+.... .+..+||+|+||||||++++++.++.++++++.++..+||++||+.|++++.
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~ 275 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLI 275 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccC--CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999988654 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCC----ceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEG----IDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|+++++.++..+++.+.+|+.+||++|+.||.+....+.++.+..+ .++.+.|||++|+++++++++++.+.++
T Consensus 276 ~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~ 355 (663)
T PTZ00400 276 AEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCE 355 (663)
T ss_pred HHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888889999999999999999999998888888765433 4688999999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++....||+++||.|||++|+.+++. .+++.+.|++|
T Consensus 356 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p 430 (663)
T PTZ00400 356 KCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTP 430 (663)
T ss_pred HHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEEeccc
Confidence 999999999999999999999999999999999999 5778888999999999999999999872 57899999999
Q ss_pred CCCCCCCcCCcc--cc-cccCCCCcccc
Q 005824 403 KYNSSLEPKTTT--SF-AAQDLPSRAGH 427 (675)
Q Consensus 403 ~~~~~~~~~~~~--~~-~~~~~p~~i~h 427 (675)
+++|.....+.. .+ ++..+|.+...
T Consensus 431 ~slgi~~~~g~~~~ii~~~t~iP~~~~~ 458 (663)
T PTZ00400 431 LSLGIETLGGVFTRLINRNTTIPTKKSQ 458 (663)
T ss_pred cceEEEecCCeeEEEEecCccCCcccee
Confidence 999864322211 12 44556665433
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.3e-62 Score=547.72 Aligned_cols=390 Identities=46% Similarity=0.723 Sum_probs=358.6
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeC-CceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTK-KERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+||||||||||+||++.+|.+.++.+..|.+.+||+|+|.+ +++++|..|..+...+|.++++++||++|+++.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 689999999999999999999999999999999999999975 5899999999999999999999999999998865 4
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+.....+||.+..+.++...+.+. ..+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~--~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCP--RLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 555677899998777776655543 345789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.|||+.+++++||+|||++|+.... .+.++||||+||||||++++++.++.++++++.++..+||.+||+.|++++.
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHH
Confidence 99999999999999999999988754 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCC----ceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEG----IDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|..+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++...|||++|+++++++++++.+.++
T Consensus 237 ~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~ 316 (668)
T PRK13410 237 EQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVK 316 (668)
T ss_pred HHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888889999999999999999999999888888876432 3678899999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++ .++++.+.|++|
T Consensus 317 ~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv~p 391 (668)
T PRK13410 317 RALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDVTP 391 (668)
T ss_pred HHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEEeecc
Confidence 999999999999999999999999999999999999 677888899999999999999999987 367899999999
Q ss_pred CCCCCC
Q 005824 403 KYNSSL 408 (675)
Q Consensus 403 ~~~~~~ 408 (675)
+++|..
T Consensus 392 ~slgie 397 (668)
T PRK13410 392 LSLGLE 397 (668)
T ss_pred ccccce
Confidence 999864
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.7e-62 Score=549.38 Aligned_cols=413 Identities=45% Similarity=0.731 Sum_probs=367.9
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-ceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+||||||||||++|++.+|.+.++++..|++.+||+|+|.++ ++++|..|..+...+|.++++++|||+|+.+++..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 6899999999999999999999999999999999999999764 89999999999999999999999999999998753
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
...+.+||.++...++...+.+ . +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i--~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQI--R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 3456789998877666655554 2 4679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+++++||+|||++|+..... .+.++||+|+||||+|++++++.++.++++++.++..+||++||+.|++++.
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~~-~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQD-QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhcccccC-CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999886542 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccC----CceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYE----GIDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|..+.+.++..+++.+.+|+.+||++|+.||....+.+.++.+.. +.++.+.|||++|+++++|+++++.+.++
T Consensus 236 ~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 315 (653)
T PRK13411 236 ENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQ 315 (653)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888999999999999999999999988888876543 34678899999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+|+.|+|+||+|++|+|++.|++.|++.++....||++|||.|||++|+.+++. ++++.+.|++|
T Consensus 316 ~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p 391 (653)
T PRK13411 316 QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTP 391 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeeccc
Confidence 99999999989999999999999999999999999976788888999999999999999999873 67899999999
Q ss_pred CCCCCCCcCCcc--c-ccccCCCCccccceee
Q 005824 403 KYNSSLEPKTTT--S-FAAQDLPSRAGHKTHR 431 (675)
Q Consensus 403 ~~~~~~~~~~~~--~-~~~~~~p~~i~h~~h~ 431 (675)
+++|........ . .++..+|.+..+.+..
T Consensus 392 ~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t 423 (653)
T PRK13411 392 LSLGIETLGEVFTKIIERNTTIPTSKSQVFST 423 (653)
T ss_pred ceeeEEecCCceEEEEECCCcccceeeEEEEe
Confidence 999854322211 1 2455667765554443
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.7e-61 Score=545.89 Aligned_cols=410 Identities=47% Similarity=0.766 Sum_probs=368.3
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEe-CCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFT-KKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+||||||||||++|++.+|.++++++..|++.+||+|+|. ++++++|+.|..+...+|.++++++|+|+|+. ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 68999999999999999999999999999999999999997 56899999999999999999999999999998 5567
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+...+.+||.+..+.++...+.+ + +..++|+++++++|++|++.++++++.++.++|||||++|++.||+++++|+
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVEI--D--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEEE--C--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 77788999999977766655543 3 3689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+.+++||+|||++|+.... .+.++||||+||||||++++++.++.++++++.++..+||.+||+.|++++.
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999987664 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccC----CceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYE----GIDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|+.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++++++++.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 314 (627)
T PRK00290 235 DEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCK 314 (627)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888999999999999999999999999888887653 25688899999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++....||++|||.|||++|+.+++ +++++.+.|++|
T Consensus 315 ~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d~~~ 389 (627)
T PRK00290 315 QALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLDVTP 389 (627)
T ss_pred HHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeeeeccc
Confidence 999999999999999999999999999999999999 678888999999999999999999987 367899999999
Q ss_pred CCCCCCCcCCc--cc-ccccCCCCcccccee
Q 005824 403 KYNSSLEPKTT--TS-FAAQDLPSRAGHKTH 430 (675)
Q Consensus 403 ~~~~~~~~~~~--~~-~~~~~~p~~i~h~~h 430 (675)
+++|.....+. +. .++..+|.+..+.+.
T Consensus 390 ~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~ 420 (627)
T PRK00290 390 LSLGIETLGGVMTKLIERNTTIPTKKSQVFS 420 (627)
T ss_pred eEEEEEecCCeEEEEecCCCcCCccceEEEE
Confidence 99885322211 12 245556665544443
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.5e-61 Score=543.65 Aligned_cols=411 Identities=46% Similarity=0.716 Sum_probs=365.8
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeC-CceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTK-KERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+||||||||||++|++.+|.+++++|..|++.+||+|+|.+ +++++|..|..+...+|.++++++|||+|+++.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 589999999999999999999999999999999999999975 4799999999999999999999999999999866 4
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+...+.+||.+..+.++...+.+... +..++++++++++|++|++.++++++.++.++|||||++|++.||+++++|+
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 45667789999877777666555433 4689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+++++||+|||++|+.... .+..+||||+||||||++++++.++.++++++.++..+||++||+.|++++.
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~ 273 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 273 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHH
Confidence 99999999999999999999988654 5678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccC----CceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYE----GIDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|..+++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. +.++...|||++|+++++++++++.+.|+
T Consensus 274 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~ 353 (673)
T PLN03184 274 SNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVE 353 (673)
T ss_pred HHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888999999999999999999999988888876532 35688899999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+|+.|+|+||+|++|.|++.|++.| +.++....||+++||.|||++|+.+++ +++++.+.|++|
T Consensus 354 ~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~p 428 (673)
T PLN03184 354 NALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLLDVTP 428 (673)
T ss_pred HHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEEeccc
Confidence 999999999999999999999999999999999999 677788889999999999999999987 357899999999
Q ss_pred CCCCCCCcCCc--ccc-cccCCCCccccce
Q 005824 403 KYNSSLEPKTT--TSF-AAQDLPSRAGHKT 429 (675)
Q Consensus 403 ~~~~~~~~~~~--~~~-~~~~~p~~i~h~~ 429 (675)
+++|....... ..+ ++..+|.+..+.+
T Consensus 429 ~slgi~~~~~~~~~ii~r~t~iP~~~~~~f 458 (673)
T PLN03184 429 LSLGLETLGGVMTKIIPRNTTLPTSKSEVF 458 (673)
T ss_pred ccceEEecCCeeEEEEeCCCccceecceEe
Confidence 99985422111 112 4455666544333
No 9
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.5e-60 Score=536.92 Aligned_cols=409 Identities=47% Similarity=0.764 Sum_probs=363.5
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-ceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+||||||||||++|++.+|.++++++..|++.+||+|+|.++ ++++|..|..+...+|+++++++|+++|+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999866 89999999999999999999999999999883 36
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+...+.+||.+ ...++...+.+ + +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 79 ~~~~~~~~~~v-~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKV-VGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeE-EcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 66677899984 45566555554 2 4679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+.+++||+|||++|+.... ..+.++||||+||||||++++++.++.++++++.++..+||++||+.|++++.
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHH
Confidence 99999999999999999999987653 35789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccC----CceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYE----GIDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|.++++.++..+++.+.+|+.+||++|+.||.+....+.++.+.. +.++.+.|||++|+++++++++++.+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~ 312 (595)
T TIGR02350 233 DEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVR 312 (595)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888999999999999999999999988888876543 35678899999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+++.|+|+||+|++|+|++.|++.| +.++....||++|||.|||++|+.+++. ++++.+.|++|
T Consensus 313 ~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~ 387 (595)
T TIGR02350 313 QALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTP 387 (595)
T ss_pred HHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeeccc
Confidence 999999999999999999999999999999999999 5778888999999999999999999873 67889999999
Q ss_pred CCCCCCCcCCc--ccc-cccCCCCccccce
Q 005824 403 KYNSSLEPKTT--TSF-AAQDLPSRAGHKT 429 (675)
Q Consensus 403 ~~~~~~~~~~~--~~~-~~~~~p~~i~h~~ 429 (675)
+++|....... +.+ ++..+|.+..+.+
T Consensus 388 ~~igi~~~~~~~~~ii~~~~~iP~~~~~~~ 417 (595)
T TIGR02350 388 LSLGIETLGGVMTKLIERNTTIPTKKSQVF 417 (595)
T ss_pred ceeEEEecCCceEEEEeCCCcCCccceEee
Confidence 99885422211 122 4555666544433
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.3e-60 Score=531.96 Aligned_cols=411 Identities=48% Similarity=0.744 Sum_probs=365.5
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-ceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+|||||||||+++|++.+|.++++++..|++.+||+|+|.++ ++++|..|..+...+|+++++++||++|+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 6899999999999999999999999999999999999999764 799999999999999999999999999998865 5
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
....+.+||.+..+.++...+.+.. .+..++++++.+++|++|++.++..++.++.++|||||++|++.||+++++|+
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~--~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPA--LNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5566779999887776766655443 34678999999999999999999999988999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+++++||+|||++|+.... .+.++||+|+||||||++++++.++.++++++.++..+||++||+.|++++.
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHH
Confidence 99999999999999999999987654 5678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccC----CceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYE----GIDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
++|.++++.++..+++.+.+|+.+||++|+.||......+.++.+.. +.++...|+|++|+++++++++++...++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 316 (621)
T CHL00094 237 KEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVE 316 (621)
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888999999999999999999999888888876543 24678899999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
++|+++++...+++.|+|+||+|++|.|++.|++.| +.++....||+++||.|||++|+.+++ ..+++.+.|++|
T Consensus 317 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~~ 391 (621)
T CHL00094 317 NALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDVTP 391 (621)
T ss_pred HHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeeeeeec
Confidence 999999999899999999999999999999999999 677888899999999999999999987 357889999999
Q ss_pred CCCCCCCcCCcc--c-ccccCCCCccccce
Q 005824 403 KYNSSLEPKTTT--S-FAAQDLPSRAGHKT 429 (675)
Q Consensus 403 ~~~~~~~~~~~~--~-~~~~~~p~~i~h~~ 429 (675)
+++|........ . .++..+|.+..+.+
T Consensus 392 ~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~ 421 (621)
T CHL00094 392 LSLGVETLGGVMTKIIPRNTTIPTKKSEVF 421 (621)
T ss_pred eeeeeeccCCEEEEEEeCCCccceeeeEEE
Confidence 999864322211 1 24555666544433
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=4.8e-60 Score=528.76 Aligned_cols=382 Identities=37% Similarity=0.619 Sum_probs=346.5
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-ceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhhh
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSVQ 87 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (675)
+||||||||||+||++.+|.++++++..|++.+||+|+|.++ .+++|..|..+...+|.++++++||++|+++.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999866 89999999999999999999999999999887643
Q ss_pred hhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 005824 88 EDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGA 167 (675)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~ 167 (675)
. .+.+||.+....++...+.+. + ..++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 556899887666665555442 2 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 005824 168 MAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQ 247 (675)
Q Consensus 168 ~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~ 247 (675)
.||++.+++++||+|||++|+.... .+.++||+|+||||||++++++.++.++++++.++..+||++||+.|++++.+
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987764 57899999999999999999999999999999999999999999999999987
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005824 248 EFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRN 327 (675)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~ 327 (675)
++ +.+...+++.+.+|+.+||++|+.||......+.++. +|.++.+.|||++|+++++++++++.+.++++|++
T Consensus 232 ~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~ 305 (599)
T TIGR01991 232 QL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD 305 (599)
T ss_pred hh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 3344567889999999999999999999888888864 67889999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccCCCCC
Q 005824 328 GKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSKYNSS 407 (675)
Q Consensus 328 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~~~~~ 407 (675)
+++...+++.|+|+||+|++|+|++.|++.| +.++....||++|||.|||++|+.+++ .+..+++.+.|++|+++|.
T Consensus 306 a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 306 AGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred cCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEE
Confidence 9999999999999999999999999999999 566777889999999999999999987 3455789999999999985
Q ss_pred C
Q 005824 408 L 408 (675)
Q Consensus 408 ~ 408 (675)
.
T Consensus 383 ~ 383 (599)
T TIGR01991 383 E 383 (599)
T ss_pred E
Confidence 3
No 12
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.8e-59 Score=524.96 Aligned_cols=380 Identities=38% Similarity=0.625 Sum_probs=343.4
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSVQ 87 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (675)
.+||||||||||+||++.+|.++++++..|++.+||+|+|.++++++|..|..+...+|.++++++||++|+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 7899999999999999999999999999999999999999988899999999999999999999999999998866 34
Q ss_pred hhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 005824 88 EDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGA 167 (675)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~ 167 (675)
.....+||.+....++...+.+. ...++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEec----CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 44566889887666666665543 24789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 005824 168 MAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQ 247 (675)
Q Consensus 168 ~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~ 247 (675)
.||++.+++++||+|||++|+.... .+..++|||+||||||++++++.++.++++++.++..+||++||+.|++++.+
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~ 251 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE 251 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999987654 56899999999999999999999999999999999999999999999999988
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005824 248 EFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRN 327 (675)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~ 327 (675)
+++. +...+++.+.+|+.+||++|+.||....+.+.+..+ ...|||++|+++++++++++.+.++++|++
T Consensus 252 ~~~~----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~~ 321 (616)
T PRK05183 252 QAGL----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALRD 321 (616)
T ss_pred HcCC----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7643 334678899999999999999999998888877532 224999999999999999999999999999
Q ss_pred CCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccCCCCC
Q 005824 328 GKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSKYNSS 407 (675)
Q Consensus 328 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~~~~~ 407 (675)
+++...+|+.|+|+||+|++|+|++.|++.| +.++....||+++||.|||++|+.+++. +..+++.+.|++|+++|.
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 322 AGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred cCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeeccccccc
Confidence 9999999999999999999999999999999 5666778899999999999999999883 345789999999999986
Q ss_pred C
Q 005824 408 L 408 (675)
Q Consensus 408 ~ 408 (675)
.
T Consensus 399 ~ 399 (616)
T PRK05183 399 E 399 (616)
T ss_pred e
Confidence 4
No 13
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=5.2e-60 Score=538.36 Aligned_cols=396 Identities=49% Similarity=0.812 Sum_probs=360.6
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhhhh
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSVQE 88 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~~ 88 (675)
||||||||+|++||++.++.++++.+..|++++||+|+|.++++++|..|......+|.++++++|+|+|+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 005824 89 DIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGAM 168 (675)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~~ 168 (675)
..+.+||.+..+.++...+.+.+.+....++|+++++++|++|++.++..++..+.++|||||++|++.||++|++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 89999999998889999999998887789999999999999999999999999899999999999999999999999999
Q ss_pred cCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 005824 169 AGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQE 248 (675)
Q Consensus 169 Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~ 248 (675)
||++.+.+++||+|||++|...... .+..+||||+||||+|++++++.++.+++++..++..+||.+||+.|++++.++
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc-cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 9999999999999999999877664 688999999999999999999999999999999989999999999999999999
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHHHHccC--CCceEEEEecccC-CceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q 005824 249 FKRKKKKDISGSPRAVQRLTTACERAKRTLSS--TSQTTIEIDSLYE-GIDFSSVITRARFEELNMDLFRKCIKHVDMCL 325 (675)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--~~~~~~~i~~~~~-~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l 325 (675)
++.+.+.++..+++.+.+|+.+||++|+.||. .....+.++.+.+ |.++.+.|+|++|+++++++++++.+.++++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 99988888888999999999999999999999 5667777877777 88899999999999999999999999999999
Q ss_pred HcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccCCC
Q 005824 326 RNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSKYN 405 (675)
Q Consensus 326 ~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~~~ 405 (675)
++++....+|+.|+|+||+|++|+|++.|++.|+ .++....||++|||.|||++|+.+++ .++.+++.+.|+.|+++
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESSEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--ccccccccccccccccc
Confidence 9999988999999999999999999999999995 88888899999999999999999987 46678889999999988
Q ss_pred CCC
Q 005824 406 SSL 408 (675)
Q Consensus 406 ~~~ 408 (675)
|..
T Consensus 397 ~i~ 399 (602)
T PF00012_consen 397 GIE 399 (602)
T ss_dssp EEE
T ss_pred ccc
Confidence 753
No 14
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-60 Score=501.15 Aligned_cols=425 Identities=65% Similarity=0.992 Sum_probs=399.0
Q ss_pred CCcCCCCcEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCC
Q 005824 1 MARKEGVLGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRR 80 (675)
Q Consensus 1 M~~~~~~~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 80 (675)
|+...-+.+||||||||+++++++.++.++++.+.+|++.+||.++|.++++++|++|..+...+|.++++++|+++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 33333448899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 005824 81 FSDVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQ 160 (675)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~ 160 (675)
++++.++..++.|||.+..+.++.+.+.+.++++.+.++++++..+.|..+++.++.+++..+.++|+|||++|++.||+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999977888999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHH
Q 005824 161 ATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNR 240 (675)
Q Consensus 161 ~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~ 240 (675)
++.+|+..||++.+++++||+|||++|+++.......+++|+|+||||+|++++.+..+.+.+.++.++..+||++||+.
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~ 240 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNK 240 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHH
Confidence 99999999999999999999999999998877667889999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHH
Q 005824 241 MVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKH 320 (675)
Q Consensus 241 i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (675)
+++|+..+|+++++.++..++++..+|+.++|.+|+.||....+.+.++.+++|.++...++|.+|++++.+++..+.+.
T Consensus 241 l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~ 320 (620)
T KOG0101|consen 241 LVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEP 320 (620)
T ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEe
Q 005824 321 VDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDV 400 (675)
Q Consensus 321 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~ 400 (675)
+.+.|.++.++..+|+.|+||||++++|.++..+++.|+++++..+.||+++||.||+++|+.+++.....+.++++.|+
T Consensus 321 v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~ 400 (620)
T KOG0101|consen 321 VEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDV 400 (620)
T ss_pred HHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeec
Confidence 99999999999999999999999999999999999999889999999999999999999999999988877899999999
Q ss_pred ccCCCCCCCcCCc--ccc-cccCCCCcc
Q 005824 401 NSKYNSSLEPKTT--TSF-AAQDLPSRA 425 (675)
Q Consensus 401 ~p~~~~~~~~~~~--~~~-~~~~~p~~i 425 (675)
.|+++|.....+. +.| +...+|.+.
T Consensus 401 ~pl~~gve~a~~~~~~~i~~~t~~P~~k 428 (620)
T KOG0101|consen 401 APLSLGVETAGGVFTVLIPRNTSIPTKK 428 (620)
T ss_pred ccccccccccCCcceeeeecccccceee
Confidence 9999987644432 222 445555543
No 15
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-59 Score=478.06 Aligned_cols=397 Identities=51% Similarity=0.797 Sum_probs=376.6
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-ceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.++|||+|||+|++++..++.+.++.|.+|++.+||+++|..+ ++++|-.|..+...+|.++++.-|+++|+.++++++
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 7999999999999999999999999999999999999999765 899999999999999999999999999999999999
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+.+.+..||+++...+|...++. .+..++|.++.+++|.++++.++++++..+.+.|+|||+||.+.||++..+|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999987788777776 46899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++++++++||+|||++|+++... ...++|+|+||||+|++++.+.++.+++.++.++..+||++||..+.+++.
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccC--CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHH
Confidence 999999999999999999999998773 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCC----ceeEEEEeHHHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEG----IDFSSVITRARFEELNMDLFRKCIKHVD 322 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (675)
.+|++..+.++..+..++.++.+++|++|.+||+..++.+.++.+..+ ..+++++||.+|++++.+++++.++.++
T Consensus 262 ~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~ 341 (640)
T KOG0102|consen 262 SEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCK 341 (640)
T ss_pred HhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999887554 5688999999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEecc
Q 005824 323 MCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNS 402 (675)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p 402 (675)
+.|.++++...||+.|+|+||.+|+|.+++.+++.| +.......||+++||.||++++..+.++ +++++++||.|
T Consensus 342 ~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdVtp 416 (640)
T KOG0102|consen 342 KALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDVTP 416 (640)
T ss_pred HHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeecch
Confidence 999999999999999999999999999999999999 7777888899999999999999999984 89999999999
Q ss_pred CCCC---------CCCcCCccc
Q 005824 403 KYNS---------SLEPKTTTS 415 (675)
Q Consensus 403 ~~~~---------~~~~~~~~~ 415 (675)
+++| ..+||||+.
T Consensus 417 LsLgietlggvft~Li~rnttI 438 (640)
T KOG0102|consen 417 LSLGIETLGGVFTKLIPRNTTI 438 (640)
T ss_pred HHHHHHhhhhhheecccCCccc
Confidence 9987 357777765
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-57 Score=498.26 Aligned_cols=372 Identities=53% Similarity=0.799 Sum_probs=345.2
Q ss_pred cEEEEecccccEEEEEEECC-eEEEEecCCCCcccceEEEEeCCc-eeecHHHHHHhhhCcCchhhcchhhhCCCCCChh
Q 005824 8 LGIGIDLGTTYSCVGVWQHN-RVEIIANDQGNRTTPSYVAFTKKE-RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVS 85 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g-~~~~l~~~~g~~~~PS~v~~~~~~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (675)
.+||||||||||+||+++++ .+.++.+..|.+.+||+|+|..++ +++|..|..+...+|.++++.+|+++|+.....
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~- 84 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGL- 84 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCCC-
Confidence 68999999999999999988 799999999999999999999775 999999999999999999999999999762110
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005824 86 VQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDA 165 (675)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a 165 (675)
.+.+.+. +..++++++.+++|++|++.++..++..+..+|||||++|++.||+++++|
T Consensus 85 --------------------~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 85 --------------------KISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred --------------------cceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 0111122 267899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHH
Q 005824 166 GAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (675)
Q Consensus 166 ~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l 245 (675)
++.||++++++++||+|||++|+.+.. .+..++|||+||||||+|++++.++.++++++.++..+||++||.+|++++
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHH
Confidence 999999999999999999999999887 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Q 005824 246 IQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCL 325 (675)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l 325 (675)
..+|..+.+.++..++..+.+|+.++|++|+.||......+.++.+..+.++..+|+|++||+++.++++++...+.+++
T Consensus 221 ~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al 300 (579)
T COG0443 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQAL 300 (579)
T ss_pred HHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888999999999999999999999999999999998877777788899999999999999999999999999
Q ss_pred HcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccCCC
Q 005824 326 RNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSKYN 405 (675)
Q Consensus 326 ~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~~~ 405 (675)
.+++++..+|+.|+|+||++|+|.|++.+++.| +.++....||+++||.|||++|..+++.. +++++.|+.|++.
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~~----~d~ll~Dv~plsl 375 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEV----PDVLLLDVIPLSL 375 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCcc----cCceEEeeeeecc
Confidence 999999999999999999999999999999999 58888999999999999999999999843 3899999999999
Q ss_pred CCCC
Q 005824 406 SSLE 409 (675)
Q Consensus 406 ~~~~ 409 (675)
|...
T Consensus 376 gie~ 379 (579)
T COG0443 376 GIET 379 (579)
T ss_pred cccc
Confidence 8643
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-58 Score=479.50 Aligned_cols=397 Identities=40% Similarity=0.627 Sum_probs=385.3
Q ss_pred CcEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 7 VLGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 7 ~~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
|+++|||||+.++.+|.+..+++++|.|+.+++.+|++|+|...+|++|.+|..+...++.+++..+||++|+.+.+|.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
+...+.+|+.+....|+...+.+.+.+..+.++++++++|+|.+|++.+++.+..++.+++|+||++|++.||+++.+|+
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCC-----CCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKA-----SSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRM 241 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~-----~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i 241 (675)
+.|||+.+++++|.+|+|++|+..... .++.+++++|+|.+++.+++..+.++.+.++++..+..+||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999986543 246789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHH
Q 005824 242 VNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHV 321 (675)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (675)
.+++.++|+.+|+.++..++++..||..+||++|+.+|.++..+.+|+.++++.|.+..++|++|++++.|+++++...+
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEec
Q 005824 322 DMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVN 401 (675)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 401 (675)
.++|++++++..||+.|.++||+||+|.|++.|++.| ++.+.++.|.++|||+|||++.|++++ .++++++-+.|+.
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~ 397 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIV 397 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceeccc
Confidence 9999999999999999999999999999999999999 899999999999999999999999998 7899999999999
Q ss_pred cCCCC
Q 005824 402 SKYNS 406 (675)
Q Consensus 402 p~~~~ 406 (675)
|++++
T Consensus 398 pysIs 402 (727)
T KOG0103|consen 398 PYSIS 402 (727)
T ss_pred ceeEE
Confidence 99985
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.8e-55 Score=486.49 Aligned_cols=354 Identities=31% Similarity=0.521 Sum_probs=303.8
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCCh---
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDV--- 84 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~--- 84 (675)
.+||||||||||++|++.+|.++++++..|++.+||+|+|.++++++|..| +++++||++|+++++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 589999999999999999999999999999999999999998889999876 6899999999987652
Q ss_pred -hhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 005824 85 -SVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATK 163 (675)
Q Consensus 85 -~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~ 163 (675)
.+....+. .. ......+.+... +..++++++.+++|++|++.++.+++.++.++|||||++|++.||++++
T Consensus 90 ~~~~~~~k~----~~--~~~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YL--DVNSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----ee--ecCCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 11111111 11 111223333333 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHH
Q 005824 164 DAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVN 243 (675)
Q Consensus 164 ~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~ 243 (675)
+|++.||++.+++++||+|||++|+.... ....+||+|+||||+|+|++++.++.++++++.++..+||++||+.|++
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~ 239 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQ 239 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHH
Confidence 99999999999999999999999987654 4568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHH
Q 005824 244 HFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDM 323 (675)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~ 323 (675)
++.++|.. ..+.+ .++.||++|+.||....... ..+.|||++|+++++++++++.+.+++
T Consensus 240 ~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~ 299 (595)
T PRK01433 240 YLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQE 299 (595)
T ss_pred HHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99887732 22222 23459999999988764321 167899999999999999999999999
Q ss_pred HHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCCccceEEEEeccC
Q 005824 324 CLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDKVEDTVVLDVNSK 403 (675)
Q Consensus 324 ~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~~~~~~~~d~~p~ 403 (675)
+|++++ ..+|+.|+|+||+|++|+|++.|++.| +.++....||++|||.|||++|+.+++. ..++.+.|++|+
T Consensus 300 ~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~ 372 (595)
T PRK01433 300 CLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPL 372 (595)
T ss_pred HHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEeccc
Confidence 999988 568999999999999999999999999 6778888999999999999999998762 357889999999
Q ss_pred CCCCC
Q 005824 404 YNSSL 408 (675)
Q Consensus 404 ~~~~~ 408 (675)
++|..
T Consensus 373 slgi~ 377 (595)
T PRK01433 373 SLGME 377 (595)
T ss_pred ceEEE
Confidence 99853
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-53 Score=447.98 Aligned_cols=428 Identities=31% Similarity=0.506 Sum_probs=380.0
Q ss_pred cEEEEecccccEEEEEEECCe-EEEEecCCCCcccceEEEEeCCceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNR-VEIIANDQGNRTTPSYVAFTKKERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~-~~~l~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
.+++||+||.++++++..+|. .+++.|..++|++|+.|+|.+++|+||++|.....++|+.++..++.++|+...++.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 789999999999999999986 5889999999999999999999999999999999999999999999999999999888
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
..+.+.+|+--+.....+..+.+.+.+ ...|+++++++|+|.+.+..|+.+...++.++|||||.+|++.+|+++.+|+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa 181 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAA 181 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHH
Confidence 877777776433333367777777665 6889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCC---CCCceEEEEEeCCCcEEEEEEEEe----------CCEEEEEEEcCCCCCc
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKA---SSEKNVLIFDLGGGTFDVSLLTIG----------KGIFKVKATAGDTHLG 233 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~---~~~~~vlvvDiGggT~dvsv~~~~----------~~~~~~l~~~~~~~~G 233 (675)
+.||++++.+|+|-.|+|+.|+..+.. ....+++|||||+|+|..+++.+. ...+++++.+.+..+|
T Consensus 182 ~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLG 261 (902)
T KOG0104|consen 182 QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLG 261 (902)
T ss_pred HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccc
Confidence 999999999999999999999987532 467899999999999999999874 1478899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHH
Q 005824 234 GEDFDNRMVNHFIQEFKRKKKK--DISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNM 311 (675)
Q Consensus 234 G~~id~~i~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~ 311 (675)
|..|+++|.++|.+.|.+..+. ++..+++++.+|..+|+++|..||.+.+....|++++++.|+...|||++|+++|+
T Consensus 262 G~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~ 341 (902)
T KOG0104|consen 262 GLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCA 341 (902)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHH
Confidence 9999999999999999887653 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCCCCCC
Q 005824 312 DLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGNRSDK 391 (675)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~~~~~ 391 (675)
++..++...|.++|..+.+...+|+.|+|.||++|+|.||+.|.+..+..++....|.++|+++||+++|+.|+. .|+
T Consensus 342 Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sFK 419 (902)
T KOG0104|consen 342 DLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SFK 419 (902)
T ss_pred HHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--ccc
Confidence 999999999999999999999999999999999999999999999997778989999999999999999999998 899
Q ss_pred ccceEEEEeccCCCCCC---CcC-----Ccc--cc-cccCCCCc-cccceeecccceec
Q 005824 392 VEDTVVLDVNSKYNSSL---EPK-----TTT--SF-AAQDLPSR-AGHKTHRAHDLQLK 438 (675)
Q Consensus 392 ~~~~~~~d~~p~~~~~~---~~~-----~~~--~~-~~~~~p~~-i~h~~h~~H~l~l~ 438 (675)
++++.+.|.+++++... .|. ++. .| +...+|.+ ..|+.+..|.+.+.
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~ 478 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFN 478 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccc
Confidence 99999999998776432 111 111 13 34566775 35555554555443
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.5e-49 Score=425.84 Aligned_cols=337 Identities=26% Similarity=0.383 Sum_probs=284.7
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEe----------------------------------------
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFT---------------------------------------- 48 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~---------------------------------------- 48 (675)
++|||||||||.+|++.+|+++++++..|...+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceeecHHHHHHhhhCcCch--hhcchhhhCCCCCChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHH
Q 005824 49 -KKERFAGNAAKNQLAMNPTNT--VFDAKRLIGRRFSDVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISS 125 (675)
Q Consensus 49 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 125 (675)
++..++|..|.+....+|+.+ +.++|+++|...-.+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 335679999999999999988 679999998653110 01224889999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCc
Q 005824 126 MVLAKMREIAKAYLGSNVKNAVVTVPAYFT-----DSQRQA---TKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEK 197 (675)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~vitvP~~~~-----~~~r~~---l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~ 197 (675)
.+|++|++.++..++.++.++|||||++|+ +.+|++ |++|++.||++.+.+++||+|||++|..... .+.
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~--~~~ 209 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT--EEK 209 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC--CCC
Confidence 999999999999999999999999999998 677655 7999999999999999999999999986543 678
Q ss_pred eEEEEEeCCCcEEEEEEEEeCC-------EEEEEEEcCCCCCcHHHHHHHHH-HHHHHHHHhh----ccCCC--------
Q 005824 198 NVLIFDLGGGTFDVSLLTIGKG-------IFKVKATAGDTHLGGEDFDNRMV-NHFIQEFKRK----KKKDI-------- 257 (675)
Q Consensus 198 ~vlvvDiGggT~dvsv~~~~~~-------~~~~l~~~~~~~~GG~~id~~i~-~~l~~~~~~~----~~~~~-------- 257 (675)
.+||+|+||||+|+|++++.++ ..++++..+ ..+||++||+.|+ +++...|... .+..+
T Consensus 210 ~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~ 288 (450)
T PRK11678 210 RVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNA 288 (450)
T ss_pred eEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhh
Confidence 9999999999999999998653 357888887 6899999999998 5777766421 11100
Q ss_pred ---------------------------CCCHHHH------------HHHHHHHHHHHHHccCCCceEEEEecccCCceeE
Q 005824 258 ---------------------------SGSPRAV------------QRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFS 298 (675)
Q Consensus 258 ---------------------------~~~~~~~------------~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~ 298 (675)
..+++.+ .+|+.++|++|+.||..+.+.+.++.+.. ++.
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~~~ 366 (450)
T PRK11678 289 VAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD--GLA 366 (450)
T ss_pred hhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC--Ccc
Confidence 0123333 26788999999999999999988886543 467
Q ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHH
Q 005824 299 SVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAA 378 (675)
Q Consensus 299 ~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa 378 (675)
..|+|++|+++++++++++.+.++++|++++.. ++.|+||||+|++|+|++.|++.|++.++.. .+|..+||.|++
T Consensus 367 ~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~-g~~~~sVa~Gla 442 (450)
T PRK11678 367 TEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVG-GDDFGSVTAGLA 442 (450)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEe-CCCcchHHHHHH
Confidence 899999999999999999999999999999865 4799999999999999999999997666664 599999999999
Q ss_pred HHHHHH
Q 005824 379 VQAAVL 384 (675)
Q Consensus 379 ~~a~~l 384 (675)
++|.++
T Consensus 443 ~~a~~~ 448 (450)
T PRK11678 443 RWAQVV 448 (450)
T ss_pred HHHHhh
Confidence 999763
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1.5e-36 Score=318.90 Aligned_cols=307 Identities=24% Similarity=0.349 Sum_probs=236.9
Q ss_pred EEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC--c-eeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 10 IGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK--E-RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
+||||||++|+++.. ++..++ ..||+|++..+ . ..+|++|.....+.|.+...-
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~-------~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVL-------NEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-------------- 62 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEE-------ccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--------------
Confidence 899999999999776 333444 36999999964 2 358999988765555544210
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
.|. . ...+...+....+++++.+.+..........+++|||++|+..+|+++.+|+
T Consensus 63 ------~pi-----~-------------~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 ------RPL-----R-------------DGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------ccC-----C-------------CCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 010 0 1122344566666777665443222223347999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.||++.+.+++||.|||++++.+.. ++..++|+|+||||||+++++.+. +...++..+||++||+.|.+++.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS--QPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987554 567799999999999999999865 33456789999999999999998
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCC----ceEEEEec--ccCCceeEEEEeHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTS----QTTIEIDS--LYEGIDFSSVITRARFEELNMDLFRKCIKH 320 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (675)
++|....+ ...+|++|+.++... ...+.+.. +..+.+..+.|++++|+++++++++++.+.
T Consensus 192 ~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~ 258 (336)
T PRK13928 192 KKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQA 258 (336)
T ss_pred HHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHH
Confidence 77642211 257899999876431 23333322 234556778999999999999999999999
Q ss_pred HHHHHHcCC--CCCCCcc-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHH
Q 005824 321 VDMCLRNGK--MDKSRVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVL 384 (675)
Q Consensus 321 i~~~l~~~~--~~~~~i~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l 384 (675)
+++.|+.++ +....++ .|+|+||+|++|+|+++|++.| +.++....||+++||.||++++..+
T Consensus 259 i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 259 VKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 999999876 3345566 7999999999999999999999 7888888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=5.7e-36 Score=313.27 Aligned_cols=305 Identities=26% Similarity=0.392 Sum_probs=241.8
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-c--eeecHHHHHHhhhCcCchhhcchhhhCCCCCChh
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-E--RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVS 85 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (675)
.|||||||+++.+ +.+++..++ + .||+|+++.+ + ..+|++|.....+.|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~---------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R---------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----------
Confidence 4999999999985 445544333 2 5999999865 2 468999999888777766431 1
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEEeCCCCCHHHHHHHH
Q 005824 86 VQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVK--NAVVTVPAYFTDSQRQATK 163 (675)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~--~~vitvP~~~~~~~r~~l~ 163 (675)
|.. ...+..-++.+.+|++++..++..++..+. .+++|+|++|+..+|+++.
T Consensus 65 --------pi~------------------~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 --------PMK------------------DGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred --------cCC------------------CCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 100 012233478899999999988777765443 7999999999999999999
Q ss_pred HHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHH
Q 005824 164 DAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVN 243 (675)
Q Consensus 164 ~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~ 243 (675)
+|++.||++.+.+++||.|||++++.... ....++|+|+|+||||++++..+. ....++..+||++||+.|.+
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHHHHHHH
Confidence 99999999999999999999999877544 567899999999999999998765 33456678999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCC----ceEEEEec--ccCCceeEEEEeHHHHHHHHHHHHHHH
Q 005824 244 HFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTS----QTTIEIDS--LYEGIDFSSVITRARFEELNMDLFRKC 317 (675)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~~~i 317 (675)
++.+++.. .. + ...||++|+.++... ...+.+.. +..+.+..+.+++++|++++.+++.++
T Consensus 192 ~l~~~~~~----~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i 258 (335)
T PRK13929 192 FVRKKYNL----LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHI 258 (335)
T ss_pred HHHHHhCc----Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHH
Confidence 99765521 11 1 267999999997531 22333332 234556788999999999999999999
Q ss_pred HHHHHHHHHcCCCC--CCCcc-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHH
Q 005824 318 IKHVDMCLRNGKMD--KSRVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 318 ~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 381 (675)
.+.+++.|++.+.+ ...++ +|+|+||+|++|++.++|++.| +.++....||+++|+.||+..-
T Consensus 259 ~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 259 LEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 99999999997643 34566 6999999999999999999999 7888888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.8e-34 Score=298.78 Aligned_cols=306 Identities=25% Similarity=0.380 Sum_probs=228.1
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-c--eeecHHHHHHhhhCcCchhhcchhhhCCCCCChh
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-E--RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVS 85 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (675)
.|||||||++++++...++ .++ .+||+|++.++ + .++|++|.......|.++...
T Consensus 7 ~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------- 64 (334)
T ss_pred eeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------------
Confidence 4999999999998543322 233 37999999865 3 479999998876555543210
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005824 86 VQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDA 165 (675)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a 165 (675)
.|+ .+ ..+...+....+++++.....+... .-..+++|+|++|++.+|+++++|
T Consensus 65 -------~pi-----~~-------------G~i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 65 -------RPM-----KD-------------GVIADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -------ecC-----CC-------------CeecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 111 00 0111112334444444443322222 123899999999999999999999
Q ss_pred HHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHH
Q 005824 166 GAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (675)
Q Consensus 166 ~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l 245 (675)
++.||++.+.+++||.|||++++.... .+..++|+|+|+||||+++++.+. ....+...+||++||+.|.+++
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvDiGggttdvs~v~~~~-----~~~~~~~~lGG~~id~~l~~~l 191 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVDIGGGTTEVAVISLGG-----IVYSKSVRVGGDKFDEAIINYV 191 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEecCC-----eEeeCCcCChHHHHHHHHHHHH
Confidence 999999999999999999999987544 466789999999999999998765 3345567899999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCc----eEEEEe--cccCCceeEEEEeHHHHHHHHHHHHHHHHH
Q 005824 246 IQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQ----TTIEID--SLYEGIDFSSVITRARFEELNMDLFRKCIK 319 (675)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~i~~ 319 (675)
.+++... . + .+.+|++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.++++.+
T Consensus 192 ~~~~~~~----~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 258 (334)
T PRK13927 192 RRNYNLL----I--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVE 258 (334)
T ss_pred HHHhCcC----c--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 8665321 1 1 2568999998864322 223332 233455667899999999999999999999
Q ss_pred HHHHHHHcCCCC--CCCcc-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHH
Q 005824 320 HVDMCLRNGKMD--KSRVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 320 ~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
.+.+.|++++.. ...++ .|+|+||+|++|+++++|++.| +.++....+|+++||.||++++..
T Consensus 259 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 259 AVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 999999987643 22234 5999999999999999999999 688888889999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.2e-33 Score=296.75 Aligned_cols=306 Identities=25% Similarity=0.360 Sum_probs=225.5
Q ss_pred EEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-----c--eeecHHHHHHhhhCcCchhhcchhhhCCCCC
Q 005824 10 IGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-----E--RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFS 82 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~ 82 (675)
|||||||++|.++....| .++ ..||+|+|.++ + ..+|++|.....+.|.+... ++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecC-----
Confidence 999999999998875433 233 47999999844 3 56999998876555544321 1111
Q ss_pred ChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 005824 83 DVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQAT 162 (675)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l 162 (675)
.+ ..+...+....+++++.....+........+++|+|++|+..+|+++
T Consensus 69 ------------------~~-------------G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 69 ------------------KD-------------GVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ------------------CC-------------CEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 00 01112233334444444333222111223899999999999999999
Q ss_pred HHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHH
Q 005824 163 KDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMV 242 (675)
Q Consensus 163 ~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~ 242 (675)
+++++.+|++.+.+++||.|||++|+.... .+..++|+|+|+||||+++++.+. ....++..+||++||+.|.
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~did~~l~ 190 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEFDEAII 190 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHHHHHHH
Confidence 999999999999999999999999886543 567889999999999999998875 3345667899999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCc-----eEEEEec--ccCCceeEEEEeHHHHHHHHHHHHH
Q 005824 243 NHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQ-----TTIEIDS--LYEGIDFSSVITRARFEELNMDLFR 315 (675)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~-----~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~~ 315 (675)
+++.+++.. ... .+.+|++|+.++.... ..+.+.. ...+......|+++++.+++.+.++
T Consensus 191 ~~l~~~~~~----~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 257 (333)
T TIGR00904 191 NYIRRTYNL----LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVN 257 (333)
T ss_pred HHHHHHhcc----cCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHH
Confidence 999766521 111 2578999999865321 1222221 1123345678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-CCc-c-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHH
Q 005824 316 KCIKHVDMCLRNGKMDK-SRV-D-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 316 ~i~~~i~~~l~~~~~~~-~~i-~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
++.+.+.+.++..+... .++ + .|+|+||+|++|+++++|++.| +.++....||+++||.||+++...
T Consensus 258 ~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 258 QIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999876432 233 3 7999999999999999999999 789999999999999999998754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.5e-33 Score=292.80 Aligned_cols=307 Identities=25% Similarity=0.355 Sum_probs=231.6
Q ss_pred EEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC---ceeecHHHHHHhhhCcCchhhcchhhhCCCCCChhh
Q 005824 10 IGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK---ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVSV 86 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (675)
+||||||++|+++++..+ .++ .+||+|++.+. ..++|++|.......|.+.. ++
T Consensus 11 vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------------ 67 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI------------ 67 (335)
T ss_pred eEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee------------
Confidence 999999999999886333 233 26999999853 35799999887654444321 00
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005824 87 QEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG 166 (675)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~ 166 (675)
.|+ .+ ..+...+....+++++.+.+..........+++|+|++|+..+|+.+.+++
T Consensus 68 ------~pi-----~~-------------G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 68 ------RPL-----KD-------------GVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred ------ecC-----CC-------------CeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 111 00 111223446667777765554433444568999999999999999999999
Q ss_pred HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
+.+|++.+.+++||.|||++++.... .....+|||+|+||||++++..+. ....+...+||.+||+.|.+++.
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVvDiG~gttdvs~v~~g~-----~~~~~~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEEEeCCCeEEEEEEEeCC-----EEeecCcCchhHHHHHHHHHHHH
Confidence 99999999999999999999876543 345679999999999999998765 23456689999999999999997
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCc----eEEEEec--ccCCceeEEEEeHHHHHHHHHHHHHHHHHH
Q 005824 247 QEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQ----TTIEIDS--LYEGIDFSSVITRARFEELNMDLFRKCIKH 320 (675)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (675)
+++. .... .+.+|++|+.++.... ..+.+.. ...+.+..+.|++++|++++.+.++++.+.
T Consensus 197 ~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 263 (335)
T PRK13930 197 RKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEA 263 (335)
T ss_pred HHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHH
Confidence 7652 1111 2578999999865432 2233322 223445678899999999999999999999
Q ss_pred HHHHHHcCCCC--CCCcc-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHH
Q 005824 321 VDMCLRNGKMD--KSRVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVL 384 (675)
Q Consensus 321 i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l 384 (675)
+.+.|+..... ...++ .|+|+||+|++|+++++|++.| +.++....+|+.+||.||++.+...
T Consensus 264 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 264 VKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 99999986533 22345 4999999999999999999999 6888888899999999999998653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=3.4e-33 Score=284.63 Aligned_cols=306 Identities=26% Similarity=0.370 Sum_probs=222.4
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-c--eeecHHHHHHhhhCcCchhhcchhhhCCCCCChh
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-E--RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSDVS 85 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (675)
-|||||||++|.+.....| .++ ..||+|+|+.+ + ..+|++|.....+.|.+...
T Consensus 3 ~igIDLGT~~t~i~~~~~G--iv~-------~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG--IVL-------NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE--EEE-------EEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred ceEEecCcccEEEEECCCC--EEE-------ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 4999999999998432222 223 35999999976 2 33899998776555554310
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005824 86 VQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDA 165 (675)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a 165 (675)
..|.. +..+...++...+|+++.+.+.......-..++++||+..++.+|+++.++
T Consensus 60 ------~~Pl~------------------~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 60 ------VRPLK------------------DGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp ------E-SEE------------------TTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred ------Ecccc------------------CCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 01211 123444567777888877766653223344899999999999999999999
Q ss_pred HHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHH
Q 005824 166 GAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (675)
Q Consensus 166 ~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l 245 (675)
+..+|...+.+++||.|||++.+.+-. +....||+|+||||||++++..+. +..+.....||++||++|.+++
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~--~~~g~miVDIG~GtTdiavislgg-----iv~s~si~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIF--EPRGSMIVDIGGGTTDIAVISLGG-----IVASRSIRIGGDDIDEAIIRYI 188 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TT--SSS-EEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCC--CCCceEEEEECCCeEEEEEEECCC-----EEEEEEEEecCcchhHHHHHHH
Confidence 999999999999999999999887655 567889999999999999998766 4445557899999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCC----ceEEEE--ecccCCceeEEEEeHHHHHHHHHHHHHHHHH
Q 005824 246 IQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTS----QTTIEI--DSLYEGIDFSSVITRARFEELNMDLFRKCIK 319 (675)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~~~i--~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~ 319 (675)
.++|.-..+ ...||++|++++... .....+ ..+..|....+.|+.+++.+++++.+++|.+
T Consensus 189 r~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~ 255 (326)
T PF06723_consen 189 REKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVE 255 (326)
T ss_dssp HHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHH
Confidence 998843222 167999999986432 223444 3457888899999999999999999999999
Q ss_pred HHHHHHHcCCCCC-CCc--cEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHH
Q 005824 320 HVDMCLRNGKMDK-SRV--DDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 320 ~i~~~l~~~~~~~-~~i--~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
.+++.|+...... .|+ ++|+|+||+|++++|.++|++.+ +.+|....+|..+|+.||.....
T Consensus 256 ~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 256 AIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999999865331 233 67999999999999999999999 89999999999999999987553
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.7e-29 Score=244.79 Aligned_cols=310 Identities=25% Similarity=0.348 Sum_probs=241.5
Q ss_pred EEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeC--C-c--eeecHHHHHHhhhCcCchhhcchhhhCCCCCC
Q 005824 9 GIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTK--K-E--RFAGNAAKNQLAMNPTNTVFDAKRLIGRRFSD 83 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~--~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 83 (675)
-||||+||.||.|..- ++.-++ ..||+|++.. + . ..+|.+|+...-+.|.+...
T Consensus 8 diGIDLGTanTlV~~k--~kgIVl-------~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------------ 66 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------------ 66 (342)
T ss_pred cceeeecccceEEEEc--CceEEe-------cCceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------------
Confidence 4999999999998654 332233 4599999988 3 2 23799988776555555411
Q ss_pred hhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCCCCCHHHHHHH
Q 005824 84 VSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLG-SNVKNAVVTVPAYFTDSQRQAT 162 (675)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~-~~~~~~vitvP~~~~~~~r~~l 162 (675)
.. | . ++..+..-++...+++|+.+....... .....+++++|..-++.+|+++
T Consensus 67 ---iR-----P-----m-------------kdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi 120 (342)
T COG1077 67 ---IR-----P-----M-------------KDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAI 120 (342)
T ss_pred ---Ee-----e-----c-------------CCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHH
Confidence 00 0 0 123445567777888888776653322 3344799999999999999999
Q ss_pred HHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHH
Q 005824 163 KDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMV 242 (675)
Q Consensus 163 ~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~ 242 (675)
++|++.||...+.+++||.|||+...+.-. .+..-||||+||||||++++.+.+ +....+..+||+.||++|.
T Consensus 121 ~ea~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~~De~Ii 193 (342)
T COG1077 121 KEAAESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDKMDEAII 193 (342)
T ss_pred HHHHHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecchhhHHHH
Confidence 999999999999999999999998776554 455679999999999999999998 6667778999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCC--------CceEEEEecccCCceeEEEEeHHHHHHHHHHHH
Q 005824 243 NHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSST--------SQTTIEIDSLYEGIDFSSVITRARFEELNMDLF 314 (675)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~--------~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~ 314 (675)
+++.++|+-..+. ..+|++|...... .+..+.-..+..|....++++.+++.+++++.+
T Consensus 194 ~yvr~~~nl~IGe-------------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v 260 (342)
T COG1077 194 VYVRKKYNLLIGE-------------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPL 260 (342)
T ss_pred HHHHHHhCeeecH-------------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHH
Confidence 9998887543332 4578888775322 123444455667888889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC--CCCcc-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 315 RKCIKHVDMCLRNGKMD--KSRVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 315 ~~i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
+.|.+.++..|+..... .+-++ .++|+||+|.+..+.+.|++.. +.++....+|..+||.|+.+....+..
T Consensus 261 ~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~~ 334 (342)
T COG1077 261 NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALDL 334 (342)
T ss_pred HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhHh
Confidence 99999999999985432 22234 4999999999999999999998 899999999999999999988876653
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=4.7e-29 Score=247.16 Aligned_cols=204 Identities=21% Similarity=0.321 Sum_probs=175.3
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCC
Q 005824 117 KYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSE 196 (675)
Q Consensus 117 ~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~ 196 (675)
.+..-+...++|+++++.++..++..+.++|+|||++|++.+|+++.+|++.||++.+.++.||.|++++|...
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34456788899999999998888888899999999999999999999999999999999999999999988642
Q ss_pred ceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 005824 197 KNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKR 276 (675)
Q Consensus 197 ~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 276 (675)
..+|+|+||||||+++++.+. +...++..+||++||+.|.+.+. +. .+++|++|+
T Consensus 109 -~~~vvDiGggtt~i~i~~~G~-----i~~~~~~~~GG~~it~~Ia~~~~----------i~---------~~~AE~~K~ 163 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKKGK-----VIYSADEPTGGTHMSLVLAGAYG----------IS---------FEEAEEYKR 163 (239)
T ss_pred -CcEEEEeCCCcEEEEEEECCe-----EEEEEeeecchHHHHHHHHHHhC----------CC---------HHHHHHHHH
Confidence 259999999999999987544 23355678999999999876652 11 177899998
Q ss_pred HccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHH
Q 005824 277 TLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQE 356 (675)
Q Consensus 277 ~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~ 356 (675)
.+. +.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|+|++.+++
T Consensus 164 ~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~ 216 (239)
T TIGR02529 164 GHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEK 216 (239)
T ss_pred hcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHH
Confidence 753 146677899999999999999999864 45799999999999999999999
Q ss_pred hcCCCcccccCCchhhHHhHHHH
Q 005824 357 FFNGKRLCQNINPDEAVAYGAAV 379 (675)
Q Consensus 357 ~~~~~~v~~~~~p~~ava~Gaa~ 379 (675)
.| +.++..+.||++++|.||++
T Consensus 217 ~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 217 QL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred Hh-CCCcccCCCCCeehhheeec
Confidence 99 78999999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=1.5e-26 Score=233.47 Aligned_cols=202 Identities=22% Similarity=0.337 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEE
Q 005824 121 EDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVL 200 (675)
Q Consensus 121 ~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vl 200 (675)
.+.....++++++.++...+.++..++++||.+++..+++++.++++.||++...+++||.|++.++... ..+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~ 138 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGA 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcE
Confidence 4566677888888888888888889999999999999999999999999999999999999999987542 159
Q ss_pred EEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccC
Q 005824 201 IFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSS 280 (675)
Q Consensus 201 vvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~ 280 (675)
|+|+||||||+++++.+. +...++..+||++||+.|.+.+.-. .+++|++|+.++
T Consensus 139 vvDIGggtt~i~v~~~g~-----~~~~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~- 193 (267)
T PRK15080 139 VVDIGGGTTGISILKDGK-----VVYSADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK- 193 (267)
T ss_pred EEEeCCCcEEEEEEECCe-----EEEEecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC-
Confidence 999999999999987544 2334568999999999999876211 267888887642
Q ss_pred CCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCC
Q 005824 281 TSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNG 360 (675)
Q Consensus 281 ~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~ 360 (675)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|+|++.+++.| +
T Consensus 194 ---------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g 246 (267)
T PRK15080 194 ---------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-G 246 (267)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-C
Confidence 357889999999999999999999863 5689999999999999999999999 7
Q ss_pred CcccccCCchhhHHhHHHHHH
Q 005824 361 KRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 361 ~~v~~~~~p~~ava~Gaa~~a 381 (675)
.++..+.+|++++|.||++++
T Consensus 247 ~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 247 LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCcccCCCchHHHHHHHHhhC
Confidence 899999999999999999863
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.92 E-value=6.7e-24 Score=228.54 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=153.3
Q ss_pred HHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHH
Q 005824 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 159 r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id 238 (675)
.+++.++++.||++...++.||.|+|.+++.... ++..++|+|+||||||+++++.+. +......++||++|+
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e--~~~gv~vvDiGggtTdisv~~~G~-----l~~~~~i~~GG~~it 240 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE--RELGVCVVDIGGGTMDIAVYTGGA-----LRHTKVIPYAGNVVT 240 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh--hhcCeEEEEeCCCceEEEEEECCE-----EEEEeeeechHHHHH
Confidence 5566789999999999999999999999865533 577899999999999999998443 445566899999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCC------CceEEEEecccCCceeEEEEeHHHHHHHHHH
Q 005824 239 NRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSST------SQTTIEIDSLYEGIDFSSVITRARFEELNMD 312 (675)
Q Consensus 239 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~ 312 (675)
+.|...+.-. ..+||++|..+... ....+.++.+.+.. ...++++++.+++++
T Consensus 241 ~dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIEP 299 (420)
T ss_pred HHHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHHH
Confidence 9998766211 27899999775421 23455555433322 357899999999999
Q ss_pred HHHHHHHHHHH-------HHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccc------------cCCchhhH
Q 005824 313 LFRKCIKHVDM-------CLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQ------------NINPDEAV 373 (675)
Q Consensus 313 ~~~~i~~~i~~-------~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~------------~~~p~~av 373 (675)
.+++|.+.+++ .+...+.....+++|+|+||+|++|+|++.+++.| +.++.. ..+|.+++
T Consensus 300 r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~at 378 (420)
T PRK09472 300 RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYST 378 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHH
Confidence 88888887765 44556666667899999999999999999999999 454432 24899999
Q ss_pred HhHHHHHHHH
Q 005824 374 AYGAAVQAAV 383 (675)
Q Consensus 374 a~Gaa~~a~~ 383 (675)
|.|+++++..
T Consensus 379 a~Gl~~~~~~ 388 (420)
T PRK09472 379 AVGLLHYGKE 388 (420)
T ss_pred HHHHHHHhhh
Confidence 9999999864
No 31
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.92 E-value=1.2e-23 Score=224.23 Aligned_cols=195 Identities=21% Similarity=0.284 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHH
Q 005824 156 DSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGE 235 (675)
Q Consensus 156 ~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~ 235 (675)
....+.+.++++.||++...++.||.|+|+++..... ....++|+|+|+||||++++..+. +...+...+||+
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~--~~~~~~vvDiG~gtt~i~i~~~g~-----~~~~~~i~~GG~ 229 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE--KELGVCLIDIGGGTTDIAVYTGGS-----IRYTKVIPIGGN 229 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch--hcCCEEEEEeCCCcEEEEEEECCE-----EEEEeeecchHH
Confidence 3456788899999999999999999999998865333 467899999999999999997443 223455789999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCC------CceEEEEecccCCceeEEEEeHHHHHHH
Q 005824 236 DFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSST------SQTTIEIDSLYEGIDFSSVITRARFEEL 309 (675)
Q Consensus 236 ~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~~~~ 309 (675)
+||+.|.+.+.- ..++||++|+.++.. ....+.++... .+....+++++|+++
T Consensus 230 ~it~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~i 288 (371)
T TIGR01174 230 HITKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEI 288 (371)
T ss_pred HHHHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHH
Confidence 999998876511 137899999998753 23456665443 355678999999999
Q ss_pred HHHHHHHHHHHHH-HHHHcCCCCCCCccE-EEEecCCcChHHHHHHHHHhcCCCcccc------------cCCchhhHHh
Q 005824 310 NMDLFRKCIKHVD-MCLRNGKMDKSRVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCQ------------NINPDEAVAY 375 (675)
Q Consensus 310 ~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-VvLvGG~s~~p~l~~~l~~~~~~~~v~~------------~~~p~~ava~ 375 (675)
+++.+++|.+.++ +.|++++.. .+++. |+|+||+|++|+|++.+++.| +.++.. ..+|.+++|.
T Consensus 289 i~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~ 366 (371)
T TIGR01174 289 IEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAV 366 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHH
Confidence 9999999999997 999988766 55665 999999999999999999999 443322 2278899999
Q ss_pred HHHHH
Q 005824 376 GAAVQ 380 (675)
Q Consensus 376 Gaa~~ 380 (675)
|++++
T Consensus 367 Gl~~~ 371 (371)
T TIGR01174 367 GLLLY 371 (371)
T ss_pred HHHhC
Confidence 98864
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.90 E-value=3.4e-22 Score=208.83 Aligned_cols=197 Identities=26% Similarity=0.387 Sum_probs=166.4
Q ss_pred HHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHH
Q 005824 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 159 r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id 238 (675)
.++|.++++++|++...++.+|.|++.+.+...+ ++.+++++|+||||||+++++-+. +...+..++||++++
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE--kelGv~lIDiG~GTTdIai~~~G~-----l~~~~~ipvgG~~vT 239 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTEDE--KELGVALIDIGGGTTDIAIYKNGA-----LRYTGVIPVGGDHVT 239 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc--HhcCeEEEEeCCCcEEEEEEECCE-----EEEEeeEeeCccHHH
Confidence 6789999999999999999999999998877665 788999999999999999999766 666777899999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCC------ceEEEEecccCCceeEEEEeHHHHHHHHHH
Q 005824 239 NRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTS------QTTIEIDSLYEGIDFSSVITRARFEELNMD 312 (675)
Q Consensus 239 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~------~~~~~i~~~~~~~~~~~~itr~~~~~~~~~ 312 (675)
.+|..-|.-.+ +.||+.|..+.... +..+.++...+.. ..++++.++.+++++
T Consensus 240 ~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEIIEA 298 (418)
T ss_pred HHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHHHh
Confidence 99999884443 78999999875433 3346666544433 678999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccc------------cCCchhhHHhHHHHH
Q 005824 313 LFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQ------------NINPDEAVAYGAAVQ 380 (675)
Q Consensus 313 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~------------~~~p~~ava~Gaa~~ 380 (675)
.+++++.++++.|++.+....-...|+|+||++.+|++.+..++.|. .+++. ..+|.++.|.|..++
T Consensus 299 R~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~ 377 (418)
T COG0849 299 RVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLY 377 (418)
T ss_pred hHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHH
Confidence 99999999999999998876667899999999999999999999993 33221 236899999999999
Q ss_pred HHHH
Q 005824 381 AAVL 384 (675)
Q Consensus 381 a~~l 384 (675)
++.+
T Consensus 378 ~~~~ 381 (418)
T COG0849 378 GALM 381 (418)
T ss_pred Hhhc
Confidence 9864
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.72 E-value=6.9e-17 Score=172.66 Aligned_cols=299 Identities=18% Similarity=0.179 Sum_probs=189.3
Q ss_pred EEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------ceeecHHHHHHhhhCcCchhhcchhhhCC
Q 005824 10 IGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK----------ERFAGNAAKNQLAMNPTNTVFDAKRLIGR 79 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k~~lg~ 79 (675)
|.||+||.+++++++.++.+.. .+||+++.... ..++|++|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~--------~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~--------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRV--------VFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL--------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCce--------EeeccceeecCcccccccCCCceEEchhhhhCCCC---------------
Confidence 7899999999999986664432 25777766532 34567665542110
Q ss_pred CCCChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHH
Q 005824 80 RFSDVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQR 159 (675)
Q Consensus 80 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r 159 (675)
+ .....|+. ...+..-+.+..+++++...... .......+++++|..++..+|
T Consensus 59 ---~-----~~~~~P~~------------------~G~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 59 ---G-----LELIYPIE------------------HGIVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ---c-----eEEccccc------------------CCEEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 0 00011211 11223334555666666543211 122345799999999998888
Q ss_pred HHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHH
Q 005824 160 QATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 160 ~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id 238 (675)
+.+.+ +.+..+++.+.++++|.+|+++++. .+.+|||+|+++|+++.+.-+. . +........+||+++|
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~~G~--~-~~~~~~~~~~GG~~l~ 181 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVVDSGDGVTHVVPVYDGY--V-LPHAIKRLDLAGRDLT 181 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEEECCCCeeEEEEEECCE--E-chhhheeccccHHHHH
Confidence 88877 5677999999999999999998764 5779999999999998887432 1 1222345689999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCC-----------------ceEEEEecccCCceeEEEE
Q 005824 239 NRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTS-----------------QTTIEIDSLYEGIDFSSVI 301 (675)
Q Consensus 239 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~-----------------~~~~~i~~~~~~~~~~~~i 301 (675)
+.|.+++..+... .... .-...++..|+.+.... ...+. +.++. .+.+
T Consensus 182 ~~l~~~l~~~~~~---~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~---lpd~~--~i~~ 246 (371)
T cd00012 182 RYLKELLRERGYE---LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYE---LPDGR--TIKV 246 (371)
T ss_pred HHHHHHHHhcCCC---ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEE---CCCCe--EEEE
Confidence 9999988654210 0111 11233555555532110 01111 12232 3455
Q ss_pred eHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCCC--CCCccEEEEecCCcChHHHHHHHHHhcC----C-----Cc
Q 005824 302 TRARF---EELNMD-----LFRKCIKHVDMCLRNGKMD--KSRVDDVVIVGGSARIPKVQQLLQEFFN----G-----KR 362 (675)
Q Consensus 302 tr~~~---~~~~~~-----~~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~----~-----~~ 362 (675)
+.+.+ |.++.| ....+.+.|.+.++....+ ....+.|+|+||+|++|++.++|++.+. . ..
T Consensus 247 ~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~ 326 (371)
T cd00012 247 GNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVK 326 (371)
T ss_pred ChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEE
Confidence 55433 233333 2337788888888876433 2336789999999999999999998883 1 23
Q ss_pred ccccCCchhhHHhHHHHHHHH
Q 005824 363 LCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 363 v~~~~~p~~ava~Gaa~~a~~ 383 (675)
+....+|..++..||.+++..
T Consensus 327 ~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 327 VIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EccCCCccccEEeCchhhcCc
Confidence 445668999999999999854
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.71 E-value=1.5e-17 Score=150.32 Aligned_cols=197 Identities=21% Similarity=0.334 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeC
Q 005824 126 MVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLG 205 (675)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiG 205 (675)
.+.+.+++.++++++....+..-++|..-.....+...+..+.||++...+++||+|||.-..++.. .|+|+|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-------~VVDiG 148 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-------GVVDIG 148 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-------cEEEeC
Confidence 4568888999999999988999999988877777788889999999999999999999987666554 899999
Q ss_pred CCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceE
Q 005824 206 GGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTT 285 (675)
Q Consensus 206 ggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~ 285 (675)
||||-+++++-++ ..+..+...||.+++.-|+-.. +.+ .+++|+.|+.-..
T Consensus 149 GGTTGIsi~kkGk-----Viy~ADEpTGGtHmtLvlAG~y--------gi~-----------~EeAE~~Kr~~k~----- 199 (277)
T COG4820 149 GGTTGISIVKKGK-----VIYSADEPTGGTHMTLVLAGNY--------GIS-----------LEEAEQYKRGHKK----- 199 (277)
T ss_pred CCcceeEEEEcCc-----EEEeccCCCCceeEEEEEeccc--------CcC-----------HhHHHHhhhcccc-----
Confidence 9999999999887 5557778999998876554322 222 2677777764211
Q ss_pred EEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccc
Q 005824 286 IEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQ 365 (675)
Q Consensus 286 ~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~ 365 (675)
.+|.-..+.|+++++.+.+++.++.. .+..+.|+||++.-|.+.+..++.| +.++..
T Consensus 200 -----------------~~Eif~~v~PV~eKMAeIv~~hie~~-----~i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~ 256 (277)
T COG4820 200 -----------------GEEIFPVVKPVYEKMAEIVARHIEGQ-----GITDLWLVGGACMQPGVEELFEKQL-ALQVHL 256 (277)
T ss_pred -----------------chhcccchhHHHHHHHHHHHHHhccC-----CCcceEEecccccCccHHHHHHHHh-cccccc
Confidence 13333456899999999999999874 4568999999999999999999999 899999
Q ss_pred cCCchhhHHhHHHHHH
Q 005824 366 NINPDEAVAYGAAVQA 381 (675)
Q Consensus 366 ~~~p~~ava~Gaa~~a 381 (675)
+..|..-.-.|.|+.+
T Consensus 257 P~~p~y~TPLgIA~sg 272 (277)
T COG4820 257 PQHPLYMTPLGIASSG 272 (277)
T ss_pred CCCcceechhhhhhcc
Confidence 9999888888877644
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.71 E-value=2.7e-15 Score=157.02 Aligned_cols=206 Identities=16% Similarity=0.205 Sum_probs=139.2
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------------CCceeEeeChhHHHHHHhccccC------CCCCceEEEEEeCC
Q 005824 146 AVVTVPAYFTDSQ-RQATKDAGAMA------------GLNVLKIISEPTAAAIAYGLHRK------ASSEKNVLIFDLGG 206 (675)
Q Consensus 146 ~vitvP~~~~~~~-r~~l~~a~~~A------------gl~~v~li~Ep~Aaa~~~~~~~~------~~~~~~vlvvDiGg 206 (675)
+++.+|..+...+ ++.+++..... .+..+.+++||.+|.+.+..+.. ......++|||+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4468998875444 46677665332 23568899999999887765422 12446789999999
Q ss_pred CcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEE
Q 005824 207 GTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTI 286 (675)
Q Consensus 207 gT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~ 286 (675)
+|||+.++.-. .+ +....++...|..++.+.|.+.+..+. .+.. .+... ++++ +... .+
T Consensus 195 ~TtD~~v~~~~--~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~--~~~~~-------ie~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQNL--KR-VEEESFVIPKGTIDVYKRIASHISKKE---EGAS--ITPYM-------LEKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEeCc--EE-cccccccccchHHHHHHHHHHHHHhhC---CCCC--CCHHH-------HHHH---HHcC---cE
Confidence 99999998722 22 233345578999999999998885432 1211 12211 2222 1111 11
Q ss_pred EEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCccccc
Q 005824 287 EIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQN 366 (675)
Q Consensus 287 ~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~ 366 (675)
.+. .+.. +.+ ++++.++++++++++.+.++..+.+ ..+++.|+|+||++++ +++.|++.|+. +...
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~ 319 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD--VEKA 319 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC--eEEc
Confidence 111 1111 222 4667788999999999888888864 2478899999999986 89999999974 4566
Q ss_pred CCchhhHHhHHHHHHHHHcC
Q 005824 367 INPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 367 ~~p~~ava~Gaa~~a~~l~~ 386 (675)
.||++|.|+|...++..+.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 79999999999999987654
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.69 E-value=2.4e-16 Score=168.68 Aligned_cols=300 Identities=18% Similarity=0.182 Sum_probs=185.6
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCCc---------eeecHHHHHHhhhCcCchhhcchhhhC
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKKE---------RFAGNAAKNQLAMNPTNTVFDAKRLIG 78 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~~---------~~~G~~A~~~~~~~~~~~~~~~k~~lg 78 (675)
..|.||+||.++++++..+..|.++ +||+|+...+. .++|++|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 4699999999999999866655433 58888775432 34566553211 000
Q ss_pred CCCCChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEeCCCCCH
Q 005824 79 RRFSDVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLG--SNVKNAVVTVPAYFTD 156 (675)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~ 156 (675)
....|+. ...+...+.+..+++++... .++ .....++++.|...+.
T Consensus 61 -----------~~~~P~~------------------~G~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 61 -----------ELKYPIE------------------HGIVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred -----------eecCCCc------------------CCEEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 0012211 12223445666677766553 222 2234689999999989
Q ss_pred HHHHHHHHHH-HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHH
Q 005824 157 SQRQATKDAG-AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGE 235 (675)
Q Consensus 157 ~~r~~l~~a~-~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~ 235 (675)
.+|+.+.+.+ +..+++.+.++++|.+++++++ ..+.+|||+|+++|+++.+.-+. . +........+||.
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~~G~--~-~~~~~~~~~~GG~ 178 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVVDGY--V-LPHAIKRIDIAGR 178 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEECCE--E-chhhheeccCcHH
Confidence 9999998865 5779999999999999999875 35779999999999999887332 1 1222334689999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCC-----------------CceEEEEecccCCceeE
Q 005824 236 DFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSST-----------------SQTTIEIDSLYEGIDFS 298 (675)
Q Consensus 236 ~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~-----------------~~~~~~i~~~~~~~~~~ 298 (675)
++|+.|.+++..+- ..... . .-...++.+|+.+... ........ +.+|..+
T Consensus 179 ~l~~~l~~~l~~~~---~~~~~----~---~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-lpdg~~~- 246 (373)
T smart00268 179 DLTDYLKELLSERG---YQFNS----S---AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE-LPDGNTI- 246 (373)
T ss_pred HHHHHHHHHHHhcC---CCCCc----H---HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE-CCCCCEE-
Confidence 99999999886510 00010 0 0113344445443110 00011111 2233332
Q ss_pred EEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCccEEEEecCCcChHHHHHHHHHhcC-----C--C
Q 005824 299 SVITRARF---EELNMDL-----FRKCIKHVDMCLRNGKMD--KSRVDDVVIVGGSARIPKVQQLLQEFFN-----G--K 361 (675)
Q Consensus 299 ~~itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~-----~--~ 361 (675)
.+..+.+ |.++.|. ...+.+.|.+.|.....+ ..-.+.|+|+||+|++|++.++|++.+. . .
T Consensus 247 -~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v 325 (373)
T smart00268 247 -KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKV 325 (373)
T ss_pred -EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCcee
Confidence 3333332 2233331 246778888888775433 1224679999999999999999998872 1 2
Q ss_pred cccccCCchhhHHhHHHHHHHH
Q 005824 362 RLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 362 ~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
++....++..++-.||++++..
T Consensus 326 ~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 326 KVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EEecCCCCccceEeCcccccCc
Confidence 4445556778888888887753
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.65 E-value=1.6e-14 Score=156.13 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeEeeChhHHHHHHhccccCCC---C
Q 005824 120 AEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG-AMAGLNVLKIISEPTAAAIAYGLHRKAS---S 195 (675)
Q Consensus 120 ~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~-~~Agl~~v~li~Ep~Aaa~~~~~~~~~~---~ 195 (675)
.-+.+..+++++..... ........+++|.|..++..+|+.|.+.+ +..+++.+.+..+|.++++++....... .
T Consensus 80 dwd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred CHHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 34555566666433211 11222346899999999999999998854 5669999999999999998863321110 2
Q ss_pred CceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHH
Q 005824 196 EKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAK 275 (675)
Q Consensus 196 ~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 275 (675)
..+-+|||+|.++|+++-+.-+ .. +.......++||.++|+.|.++|.++. ..+... .....++++|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~~G--~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVVDG--YV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEECC--EE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHH
Confidence 2455999999999999877632 22 111223358999999999999985431 111111 0113355555
Q ss_pred HHccCC-----------------CceEEEEecccCCceeEEEEeHHHHH---HHHHHHH------HHHHHHHHHHHHcCC
Q 005824 276 RTLSST-----------------SQTTIEIDSLYEGIDFSSVITRARFE---ELNMDLF------RKCIKHVDMCLRNGK 329 (675)
Q Consensus 276 ~~ls~~-----------------~~~~~~i~~~~~~~~~~~~itr~~~~---~~~~~~~------~~i~~~i~~~l~~~~ 329 (675)
+.+.-. ....+.++...++....+.|..+.|. -+|.|-+ ..+.+.|.+.|.+..
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 554211 01112222222233345677776653 3444422 246777778887765
Q ss_pred CC--CCCccEEEEecCCcChHHHHHHHHHhcC
Q 005824 330 MD--KSRVDDVVIVGGSARIPKVQQLLQEFFN 359 (675)
Q Consensus 330 ~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~ 359 (675)
.+ ..-.+.|+|+||+|.+|++.++|++.+.
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 33 2335789999999999999999998883
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.58 E-value=7.5e-14 Score=145.46 Aligned_cols=207 Identities=16% Similarity=0.200 Sum_probs=135.7
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeEeeChhHHHHHHhccccC--CCCCceEEEEEeCCCcEE
Q 005824 142 NVKNAVVTVPAYFTDSQRQATKDAGAMA---------GLNVLKIISEPTAAAIAYGLHRK--ASSEKNVLIFDLGGGTFD 210 (675)
Q Consensus 142 ~~~~~vitvP~~~~~~~r~~l~~a~~~A---------gl~~v~li~Ep~Aaa~~~~~~~~--~~~~~~vlvvDiGggT~d 210 (675)
.+..+|+.+|..+...+++.|++.+... .+..+.+++||.+|.+.+..+.. ......++|||+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4557999999999888999999987642 44678999999999888765432 125677899999999999
Q ss_pred EEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEec
Q 005824 211 VSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDS 290 (675)
Q Consensus 211 vsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~ 290 (675)
+.+++ +..+ +....++...|...+.+.|.+.+.+++.. ....+...+. ...++-|. +.+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~----~~~~~~~~i~---~~l~~g~~---------~~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGT----PAYRDIDRID---LALRTGKQ---------PRI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCC----CCccCHHHHH---HHHHhCCc---------eee--
Confidence 98775 2222 33445567889999999988888766532 1001111111 11111110 000
Q ss_pred ccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCch
Q 005824 291 LYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPD 370 (675)
Q Consensus 291 ~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~ 370 (675)
.+. .+.|+ +.++ ..+..++++...+.+.+.. ..+++.|+|+||++. .+++.|++.|+...+....||+
T Consensus 240 --~gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~~~----~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQK--PVDIK-RCLE-LAETVAQQAVSTMMTWIGA----PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --cce--ecCch-HHHH-HHHHHHHHHHHHHHHhccc----CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 111 11222 2222 3344445555555444422 245889999999987 6899999999876666778999
Q ss_pred hhHHhHHHHHH
Q 005824 371 EAVAYGAAVQA 381 (675)
Q Consensus 371 ~ava~Gaa~~a 381 (675)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 39
>PTZ00004 actin-2; Provisional
Probab=99.57 E-value=1.1e-13 Score=147.58 Aligned_cols=303 Identities=14% Similarity=0.162 Sum_probs=184.8
Q ss_pred CCcCCCCcEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------ceeecHHHHHHhhhCcCchh
Q 005824 1 MARKEGVLGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK----------ERFAGNAAKNQLAMNPTNTV 70 (675)
Q Consensus 1 M~~~~~~~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~----------~~~~G~~A~~~~~~~~~~~~ 70 (675)
|+-+.. ..|.||+|+.+++++++.++.|..+ +||+++.... ..++|+++.... ..
T Consensus 1 ~~~~~~-~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~- 65 (378)
T PTZ00004 1 MSVEET-NAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----GI- 65 (378)
T ss_pred CCCCCC-CeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc-----cc-
Confidence 665544 6799999999999999866655433 5777766432 233454432110 00
Q ss_pred hcchhhhCCCCCChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhC--CCCCcEEE
Q 005824 71 FDAKRLIGRRFSDVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLG--SNVKNAVV 148 (675)
Q Consensus 71 ~~~k~~lg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~--~~~~~~vi 148 (675)
.. ...|+. ...+..-+.+..+++++.. ..+. .....+++
T Consensus 66 ~~------------------l~~Pi~------------------~G~i~d~d~~e~i~~~~~~---~~l~v~~~~~pvll 106 (378)
T PTZ00004 66 LT------------------LKYPIE------------------HGIVTNWDDMEKIWHHTFY---NELRVAPEEHPVLL 106 (378)
T ss_pred ce------------------EcccCc------------------CCEEcCHHHHHHHHHHHHH---hhcccCCccCccee
Confidence 00 001110 1122334455556666432 1222 23346889
Q ss_pred EeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEc
Q 005824 149 TVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATA 227 (675)
Q Consensus 149 tvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~ 227 (675)
|-|..++..+|+.+.+ ..+..+++.+.+..+|.+++++++. .+-+|||+|.+.|+++-+.- +.. +....
T Consensus 107 te~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~d--G~~-l~~~~ 176 (378)
T PTZ00004 107 TEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYE--GYS-LPHAI 176 (378)
T ss_pred ecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEEC--CEE-eecce
Confidence 9999999999988877 5577899999999999999987653 35599999999999977653 222 22233
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccC---------------CC--ceEEEEec
Q 005824 228 GDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSS---------------TS--QTTIEIDS 290 (675)
Q Consensus 228 ~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~---------------~~--~~~~~i~~ 290 (675)
...++||.++++.|.+.|..+. ..+. +... ...+++.|+.+.. .. ...+.
T Consensus 177 ~~~~~GG~~lt~~L~~lL~~~~-----~~~~--~~~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~--- 243 (378)
T PTZ00004 177 HRLDVAGRDLTEYMMKILHERG-----TTFT--TTAE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE--- 243 (378)
T ss_pred eeecccHHHHHHHHHHHHHhcC-----CCCC--cHHH---HHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---
Confidence 3468999999999999885431 1111 1111 1223444444310 00 11122
Q ss_pred ccCCceeEEEEeHHHH---HHHHHHH------HHHHHHHHHHHHHcCCCC--CCCccEEEEecCCcChHHHHHHHHHhcC
Q 005824 291 LYEGIDFSSVITRARF---EELNMDL------FRKCIKHVDMCLRNGKMD--KSRVDDVVIVGGSARIPKVQQLLQEFFN 359 (675)
Q Consensus 291 ~~~~~~~~~~itr~~~---~~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~ 359 (675)
+.+|.. +.+..+.+ |-+|.|- ...+.++|.+.+.+...+ ..-.+.|+|+||+|.+|++.++|++.+.
T Consensus 244 lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~ 321 (378)
T PTZ00004 244 LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELT 321 (378)
T ss_pred CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHH
Confidence 234443 44555554 2345543 235667788888776533 2235789999999999999999998872
Q ss_pred -------CCcccccCCchhhHHhHHHHHHH
Q 005824 360 -------GKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 360 -------~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
..++....++..++-+|+++++.
T Consensus 322 ~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 322 TLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HhCCCCccEEEecCCCCceeEEECcccccC
Confidence 12444555777888888888774
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.56 E-value=9e-14 Score=150.13 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=181.8
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC-----ceeecHHHHHHhhhCcCchhhcchhhhCCCCC
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK-----ERFAGNAAKNQLAMNPTNTVFDAKRLIGRRFS 82 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~ 82 (675)
.+|-||+|+.+++++++.+..|..+ +||.++.... ..++|..+... .+... +
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~---~--------- 61 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE---L--------- 61 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTGEE---E---------
T ss_pred CEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhhee---e---------
Confidence 6899999999999999866555433 5888776554 24677663321 00000 0
Q ss_pred ChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 005824 83 DVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQAT 162 (675)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l 162 (675)
..|+. ...+...+.+..+++++..... ........++++.|..++...|+.|
T Consensus 62 ---------~~p~~------------------~g~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l 113 (393)
T PF00022_consen 62 ---------RSPIE------------------NGVIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKL 113 (393)
T ss_dssp ---------EESEE------------------TTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHH
T ss_pred ---------eeecc------------------cccccccccccccccccccccc-ccccccceeeeeccccCCchhhhhh
Confidence 01110 1122233455556666554321 1123345699999999999999988
Q ss_pred HH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHH
Q 005824 163 KD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRM 241 (675)
Q Consensus 163 ~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i 241 (675)
.+ +.+..+++.+.+++++.+|+++++.. +-+|||+|.+.|.++-+. ++.. +........+||+++++.|
T Consensus 114 ~e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 114 AEILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp HHHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHH
T ss_pred hhhhhcccccceeeeeecccccccccccc-------cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHH
Confidence 77 45677999999999999999988754 349999999999887764 2221 1111223589999999999
Q ss_pred HHHHHHHHHh---hccCCC--C--CCHHHHHHHHHHHHHHHHHc---------------cCCCceEEEEecccCCceeEE
Q 005824 242 VNHFIQEFKR---KKKKDI--S--GSPRAVQRLTTACERAKRTL---------------SSTSQTTIEIDSLYEGIDFSS 299 (675)
Q Consensus 242 ~~~l~~~~~~---~~~~~~--~--~~~~~~~~l~~~~e~~K~~l---------------s~~~~~~~~i~~~~~~~~~~~ 299 (675)
.+.|.++-.. .+.... . ...-....-...++.+|+.+ .......+.++ ++. .+
T Consensus 184 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i 258 (393)
T PF00022_consen 184 KELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TI 258 (393)
T ss_dssp HHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EE
T ss_pred HHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--cc
Confidence 9988774110 000000 0 00000011112233333332 12223344332 443 44
Q ss_pred EEeHHHHHHHHHHHHH----------------HHHHHHHHHHHcCCCCCC--CccEEEEecCCcChHHHHHHHHHhcC--
Q 005824 300 VITRARFEELNMDLFR----------------KCIKHVDMCLRNGKMDKS--RVDDVVIVGGSARIPKVQQLLQEFFN-- 359 (675)
Q Consensus 300 ~itr~~~~~~~~~~~~----------------~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~l~~~l~~~~~-- 359 (675)
.+..+.+ .+.+.+++ .+.++|.+.+.....+.. -.+.|+|+||+|++|++.++|++.+.
T Consensus 259 ~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~ 337 (393)
T PF00022_consen 259 ILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSL 337 (393)
T ss_dssp EESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhh
Confidence 5555444 22333322 577888888888754422 25789999999999999999998873
Q ss_pred -----CCcccccC-CchhhHHhHHHHHHHH
Q 005824 360 -----GKRLCQNI-NPDEAVAYGAAVQAAV 383 (675)
Q Consensus 360 -----~~~v~~~~-~p~~ava~Gaa~~a~~ 383 (675)
..++.... +|..++-.||+++|..
T Consensus 338 ~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 338 LPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp SGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhccccceeccCchhhhhcccccceeeecc
Confidence 23556666 8999999999999863
No 41
>PTZ00452 actin; Provisional
Probab=99.56 E-value=2.5e-13 Score=144.22 Aligned_cols=299 Identities=15% Similarity=0.166 Sum_probs=180.4
Q ss_pred cEEEEecccccEEEEEEECCeEEEEecCCCCcccceEEEEeCC----------ceeecHHHHHHhhhCcCchhhcchhhh
Q 005824 8 LGIGIDLGTTYSCVGVWQHNRVEIIANDQGNRTTPSYVAFTKK----------ERFAGNAAKNQLAMNPTNTVFDAKRLI 77 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~~~~l~~~~g~~~~PS~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k~~l 77 (675)
..|-||+|+.+++++++.+..|.++ +||+|+.... ..++|++|.... ....+
T Consensus 6 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~~~~l---- 67 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------GVLAI---- 67 (375)
T ss_pred CEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc------cCcEE----
Confidence 5799999999999999977766543 5777765432 223444432110 00000
Q ss_pred CCCCCChhhhhhcccCCeEEEeCCCCCceEEEEEcCceeeeeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHH
Q 005824 78 GRRFSDVSVQEDIKLWPFKVIAGPNDKPMIAVKYKGGEKKYAAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDS 157 (675)
Q Consensus 78 g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~ 157 (675)
..|. ....+..-+.+..+++++....- ........+++|-|..++..
T Consensus 68 --------------~~Pi------------------~~G~I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~ 114 (375)
T PTZ00452 68 --------------KEPI------------------QNGIINSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKF 114 (375)
T ss_pred --------------cccC------------------cCCEEcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHH
Confidence 0111 01222333444456666532211 12233456899999999999
Q ss_pred HHHHHHHH-HHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHH
Q 005824 158 QRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGED 236 (675)
Q Consensus 158 ~r~~l~~a-~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~ 236 (675)
.|+.|.+. .+..+++.+.+..++.+++++++. .+-+|||+|.+.|+++-+.- +.. +.......++||.+
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV~d--G~~-l~~~~~r~~~gG~~ 184 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPVFE--GHQ-IPQAITKINLAGRL 184 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEEEC--CEE-eccceEEeeccchH
Confidence 99999885 567799999999999999987653 35599999999999876652 222 12222335799999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCC--------------C--ceEEEEecccCCceeEEE
Q 005824 237 FDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSST--------------S--QTTIEIDSLYEGIDFSSV 300 (675)
Q Consensus 237 id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~--------------~--~~~~~i~~~~~~~~~~~~ 300 (675)
+++.|.+.|.++ +..+.. ... ...++..|+.+.-. . ..... +.+|. .+.
T Consensus 185 lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~ 249 (375)
T PTZ00452 185 CTDYLTQILQEL-----GYSLTE-PHQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILT 249 (375)
T ss_pred HHHHHHHHHHhc-----CCCCCC-HHH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEE
Confidence 999998887432 111111 110 11234444443210 0 11222 23444 345
Q ss_pred EeHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCCC--CCCccEEEEecCCcChHHHHHHHHHhcC-----C--Ccc
Q 005824 301 ITRARF---EELNMDLF-----RKCIKHVDMCLRNGKMD--KSRVDDVVIVGGSARIPKVQQLLQEFFN-----G--KRL 363 (675)
Q Consensus 301 itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~-----~--~~v 363 (675)
+..+.+ |-+|+|.+ ..+.+++.+.+.....+ ..-.++|+|+||+|.+|++.++|++.+. . .++
T Consensus 250 l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v 329 (375)
T PTZ00452 250 IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQV 329 (375)
T ss_pred eehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEE
Confidence 666655 23344432 24667777777776433 3346899999999999999999998872 1 234
Q ss_pred cccCCchhhHHhHHHHHHH
Q 005824 364 CQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 364 ~~~~~p~~ava~Gaa~~a~ 382 (675)
..+.++..++-.|+++++.
T Consensus 330 ~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 330 AAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred ecCCCcceeEEECchhhcC
Confidence 4455667788888888874
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.55 E-value=5.5e-13 Score=141.45 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHcCCceeEeeChhHHHHHHhc-----cccCCCCCc-eEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCC
Q 005824 156 DSQRQATKDAGAMAGLNVLKIISEPTAAAIAYG-----LHRKASSEK-NVLIFDLGGGTFDVSLLTIGKGIFKVKATAGD 229 (675)
Q Consensus 156 ~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~-----~~~~~~~~~-~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~ 229 (675)
....+.+.++++.||++...+..+|.|.+-.+. .... .... .++++|+|+++|+++++.-+. +...+.
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~~g~-----~~~~r~ 215 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLHPGR-----MLFTRE 215 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEECCe-----EEEEEE
Confidence 566788999999999999999999999877663 1112 1334 499999999999999998665 555667
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHH
Q 005824 230 THLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEEL 309 (675)
Q Consensus 230 ~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~ 309 (675)
..+||.+|++.|.+.+.-. .++||+.|........ ...++
T Consensus 216 i~~G~~~i~~~i~~~~~~~-------------------~~~Ae~~k~~~~~~~~---------------------~~~~~ 255 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYGLN-------------------PEEAGEAKQQGGLPLL---------------------YDPEV 255 (348)
T ss_pred eechHHHHHHHHHHHcCCC-------------------HHHHHHHHhcCCCCCc---------------------hhHHH
Confidence 8999999999987655111 1667887765321100 01234
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccc-------------------cCC
Q 005824 310 NMDLFRKCIKHVDMCLRNG--KMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQ-------------------NIN 368 (675)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~-------------------~~~ 368 (675)
+++.++++...|.+.++.. ......++.|+|+||++.+++|.+.+++.| +.++.. ...
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~ 334 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDA 334 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhh
Confidence 5566666666666666432 223346899999999999999999999999 443322 134
Q ss_pred chhhHHhHHHHHH
Q 005824 369 PDEAVAYGAAVQA 381 (675)
Q Consensus 369 p~~ava~Gaa~~a 381 (675)
|..++|.|+|+++
T Consensus 335 ~~~~~a~Glalr~ 347 (348)
T TIGR01175 335 PALMTALGLALRG 347 (348)
T ss_pred HHHHHHhhHhhcC
Confidence 5677888888764
No 43
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.54 E-value=1e-13 Score=145.91 Aligned_cols=207 Identities=19% Similarity=0.281 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCcE--------------------EEEeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHH
Q 005824 125 SMVLAKMREIAKAYLGSNVKNA--------------------VVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAA 184 (675)
Q Consensus 125 ~~~L~~l~~~a~~~~~~~~~~~--------------------vitvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa 184 (675)
.++-+.+...+++++..++.++ ++++| .+..+.+.++++.||+++..+--++.|.+
T Consensus 88 ~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~ 163 (340)
T PF11104_consen 88 KELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALA 163 (340)
T ss_dssp HHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHH
Confidence 3444556677777776555443 33333 45567888999999999999988888876
Q ss_pred HHhcccc---C-CCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 005824 185 IAYGLHR---K-ASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGS 260 (675)
Q Consensus 185 ~~~~~~~---~-~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~ 260 (675)
-.+.... + ......++++|+|+.+|.+.+++-+. +...+...+||.++++.|.+.+.-.+
T Consensus 164 r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~-----~~f~R~i~~G~~~l~~~i~~~~~i~~----------- 227 (340)
T PF11104_consen 164 RLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGK-----PIFSRSIPIGGNDLTEAIARELGIDF----------- 227 (340)
T ss_dssp GGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHHHHTT--H-----------
T ss_pred HHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCE-----EEEEEEEeeCHHHHHHHHHHhcCCCH-----------
Confidence 5554321 1 12456899999999999999988554 34456679999999999998763332
Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCccEE
Q 005824 261 PRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRN--GKMDKSRVDDV 338 (675)
Q Consensus 261 ~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~V 338 (675)
.++|+.|...+.. .+...+++++.++++.+.|++.++- .......|+.|
T Consensus 228 --------~~Ae~~k~~~~l~---------------------~~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I 278 (340)
T PF11104_consen 228 --------EEAEELKRSGGLP---------------------EEYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERI 278 (340)
T ss_dssp --------HHHHHHHHHT---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEE
T ss_pred --------HHHHHHHhcCCCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEE
Confidence 5667777652110 1223455556666666666665552 12234579999
Q ss_pred EEecCCcChHHHHHHHHHhcCCCcccc---------cC----------CchhhHHhHHHHHH
Q 005824 339 VIVGGSARIPKVQQLLQEFFNGKRLCQ---------NI----------NPDEAVAYGAAVQA 381 (675)
Q Consensus 339 vLvGG~s~~p~l~~~l~~~~~~~~v~~---------~~----------~p~~ava~Gaa~~a 381 (675)
+|+||+|++++|.+.|++.+ +.++.. .. .|..++|.|+|+++
T Consensus 279 ~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 279 YLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp EEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 99999999999999999999 454321 11 37789999999975
No 44
>PTZ00281 actin; Provisional
Probab=99.51 E-value=3.7e-13 Score=143.42 Aligned_cols=239 Identities=14% Similarity=0.142 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCce
Q 005824 120 AEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKN 198 (675)
Q Consensus 120 ~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~ 198 (675)
.-+.+..+++++....- ........+++|-|..++..+|+.|.+ +.+..+++.+.+..+|.+++++++. .+
T Consensus 79 dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~t 150 (376)
T PTZ00281 79 NWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TT 150 (376)
T ss_pred CHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ce
Confidence 33445555565543110 112233568999999999999999988 5677899999999999999987653 35
Q ss_pred EEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHc
Q 005824 199 VLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTL 278 (675)
Q Consensus 199 vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l 278 (675)
-+|||+|.+.|.++-+.-+. .+.......++||.++++.|.+.|..+- ..+.. . .. ...++.+|+.+
T Consensus 151 glVVDiG~~~t~v~PV~dG~---~~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~-~~---~~~~~~iKe~~ 217 (376)
T PTZ00281 151 GIVMDSGDGVSHTVPIYEGY---ALPHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-T-AE---REIVRDIKEKL 217 (376)
T ss_pred EEEEECCCceEEEEEEEecc---cchhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-H-HH---HHHHHHHHHhc
Confidence 69999999999987555332 1122233468999999999998885431 11111 1 11 12355556553
Q ss_pred cCCC--------------ceEEEEecccCCceeEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCCC--CCC
Q 005824 279 SSTS--------------QTTIEIDSLYEGIDFSSVITRARF---EELNMDLF-----RKCIKHVDMCLRNGKMD--KSR 334 (675)
Q Consensus 279 s~~~--------------~~~~~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~ 334 (675)
.-.. ....... +.+|. .+.+..+.+ |.+|+|.+ ..|.++|.+.+.+...+ ..-
T Consensus 218 c~v~~d~~~~~~~~~~~~~~~~~y~-LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L 294 (376)
T PTZ00281 218 AYVALDFEAEMQTAASSSALEKSYE-LPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 294 (376)
T ss_pred EEecCCchHHHHhhhcCcccceeEE-CCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHH
Confidence 2100 0011111 22333 345555544 33444432 24667777777766433 223
Q ss_pred ccEEEEecCCcChHHHHHHHHHhcC-------CCcccccCCchhhHHhHHHHHHH
Q 005824 335 VDDVVIVGGSARIPKVQQLLQEFFN-------GKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 335 i~~VvLvGG~s~~p~l~~~l~~~~~-------~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
.+.|+|+||+|.+|++.++|++.+. ..++..+.++..++.+|+++++.
T Consensus 295 ~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 295 YGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 5789999999999999999998872 12445555777888888888875
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.49 E-value=4.2e-13 Score=142.71 Aligned_cols=238 Identities=14% Similarity=0.138 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCce
Q 005824 120 AEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKN 198 (675)
Q Consensus 120 ~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~ 198 (675)
.-+.+..+++++.+... .......+++|-|..++..+|+.|.+ ..+..+++.+.+.++|.+++++++. .+
T Consensus 85 dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~t 155 (380)
T PTZ00466 85 NWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TN 155 (380)
T ss_pred CHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ce
Confidence 34455555566543211 12233468899999999999999877 5577899999999999999988653 35
Q ss_pred EEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHc
Q 005824 199 VLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTL 278 (675)
Q Consensus 199 vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l 278 (675)
-+|||+|.+.|.++-+.- +.. +.......++||.++++.|.+.|.++ +... +... -.+.++..|+.+
T Consensus 156 glVVD~G~~~t~v~PV~~--G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~--~~~~---~~~~v~~iKe~~ 222 (380)
T PTZ00466 156 GTVLDCGDGVCHCVSIYE--GYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLF--NTSA---EMEVVKNMKENC 222 (380)
T ss_pred EEEEeCCCCceEEEEEEC--CEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCC--CcHH---HHHHHHHHHHhC
Confidence 699999999999866552 222 12223335899999999999887432 1111 1111 112344555543
Q ss_pred cC-------------CCceEEEEecccCCceeEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCCC--CCCc
Q 005824 279 SS-------------TSQTTIEIDSLYEGIDFSSVITRARF---EELNMDLF-----RKCIKHVDMCLRNGKMD--KSRV 335 (675)
Q Consensus 279 s~-------------~~~~~~~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i 335 (675)
.- ........+ +.+|. .+.|..+.+ |-+|.|-+ ..+.++|.+.+.+...+ ..-.
T Consensus 223 c~v~~d~~~e~~~~~~~~~~~~y~-LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~ 299 (380)
T PTZ00466 223 CYVSFNMNKEKNSSEKALTTLPYI-LPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLY 299 (380)
T ss_pred eEecCChHHHHhhccccccceeEE-CCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHh
Confidence 10 000011111 22443 344565555 33344421 24667777777776433 2335
Q ss_pred cEEEEecCCcChHHHHHHHHHhcC-----C--CcccccCCchhhHHhHHHHHHH
Q 005824 336 DDVVIVGGSARIPKVQQLLQEFFN-----G--KRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 336 ~~VvLvGG~s~~p~l~~~l~~~~~-----~--~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
.+|+|+||+|.+|++.++|++.+. . .++..+.++..++-+|++++|.
T Consensus 300 ~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 300 SHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred hcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 899999999999999999998882 1 2345555777888888888874
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.44 E-value=8.2e-13 Score=137.23 Aligned_cols=175 Identities=18% Similarity=0.259 Sum_probs=104.4
Q ss_pred CceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHH
Q 005824 171 LNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFK 250 (675)
Q Consensus 171 l~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~ 250 (675)
+..+.+++|+.||.+.+..+.. +...++|||+||+|+|++++.-.-.. +....+...+|-..+.+.+.+.|... .
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~~~--~~~~~lVVDIGG~T~Dv~~v~~~~~~--~~~~~~~~~~Gvs~~~~~I~~~l~~~-~ 214 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMDLD--EDESVLVVDIGGRTTDVAVVRGGLPD--ISKCSGTPEIGVSDLYDAIAQALRSA-G 214 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEEGGG----EEEEEEETTSSTHHHHHHHHHHTT---S
T ss_pred EeeEEEEcccHHHHHHHHHhhc--ccCcEEEEEcCCCeEEeeeecCCccc--cchhccCCchhHHHHHHHHHHHHHHh-c
Confidence 3578999999999998776633 45789999999999999998632111 12234445789999999988887541 0
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005824 251 RKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKM 330 (675)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~ 330 (675)
.. .+......+...-. -+.-++ ......+ ..+++.++++..++++.+.|.+.+.+.
T Consensus 215 ~~------~s~~~~~~ii~~~~-~~~~~~----------~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~~-- 270 (318)
T PF06406_consen 215 ID------TSELQIDDIIRNRK-DKGYLR----------QVINDED-----VIDDVSEVIEEAVEELINRILRELGDF-- 270 (318)
T ss_dssp BH------HHHHHHHHHHHTTT--HHHHH----------HHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred CC------CcHHHHHHHHHhhh-ccceec----------ccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 00 00011111111000 000000 0000000 234555666666666666666666532
Q ss_pred CCCCccEEEEecCCcChHHHHHHHHHhcC--CCcccccCCchhhHHhHHH
Q 005824 331 DKSRVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNINPDEAVAYGAA 378 (675)
Q Consensus 331 ~~~~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~Gaa 378 (675)
.+++.|+|+||+|. .+.+.|++.|+ ..++....||++|.|+|-+
T Consensus 271 --~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 271 --SDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ---S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --ccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 46789999999986 69999999984 3578888899999999975
No 47
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.4e-10 Score=114.31 Aligned_cols=157 Identities=17% Similarity=0.229 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCceeEeeChhHHHHHHhccc--cCC--CCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCC
Q 005824 157 SQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLH--RKA--SSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHL 232 (675)
Q Consensus 157 ~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~--~~~--~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~ 232 (675)
+..+...+|++.||++...+--|..|..-+|... +-. ....+++|+|+|+..+.+.++.-++ ....+...+
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~ 223 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPV 223 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe-----eeeEeeccC
Confidence 3356778899999999999999999987766521 111 1223468999999999999999777 455677899
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHH
Q 005824 233 GGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMD 312 (675)
Q Consensus 233 GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~ 312 (675)
||+.+++.|.+.+.-.+ ..++.+|.....-. +.-.++..+
T Consensus 224 g~~Qlt~~i~r~~~L~~-------------------~~a~~~k~~~~~P~---------------------~y~~~vl~~ 263 (354)
T COG4972 224 GTDQLTQEIQRAYSLTE-------------------EKAEEIKRGGTLPT---------------------DYGSEVLRP 263 (354)
T ss_pred cHHHHHHHHHHHhCCCh-------------------hHhHHHHhCCCCCC---------------------chhHHHHHH
Confidence 99999999887662111 45666666432111 223455566
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCccEEEEecCCcChHHHHHHHHHhc
Q 005824 313 LFRKCIKHVDMCLRNG--KMDKSRVDDVVIVGGSARIPKVQQLLQEFF 358 (675)
Q Consensus 313 ~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~ 358 (675)
+++++.+.|++.|+.. .....+|+.|+|.||++.+.+|.+.+.+.+
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 6666666666665531 224567999999999999999999999998
No 48
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.24 E-value=6e-10 Score=111.41 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=87.8
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCC
Q 005824 119 AAEDISSMVLAKMREIAKAYLGS--NVKNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASS 195 (675)
Q Consensus 119 ~~~~l~~~~L~~l~~~a~~~~~~--~~~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~ 195 (675)
..-++..+..++..+ .++.. .-.-++||-|++-+.+.|+.+.+ +.+...++...+..+|.++|++.+.
T Consensus 83 ~dWD~~~~~w~~~~~---~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr------ 153 (426)
T KOG0679|consen 83 EDWDLFEMQWRYAYK---NQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR------ 153 (426)
T ss_pred ccHHHHHHHHHHHHh---hhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC------
Confidence 344667777777663 23332 23458999999889999988877 5678899999999999999998653
Q ss_pred CceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 005824 196 EKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQE 248 (675)
Q Consensus 196 ~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~ 248 (675)
.+.+|||+|++++.++-+- ++.+-..+... ..+||+.|+..+.+.|..+
T Consensus 154 -stalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 -STALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred -CceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 4669999999999887554 34443344444 5899999999999998764
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.20 E-value=7.3e-10 Score=118.48 Aligned_cols=231 Identities=17% Similarity=0.195 Sum_probs=137.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEE
Q 005824 144 KNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFK 222 (675)
Q Consensus 144 ~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~ 222 (675)
..+++|-|..+....|+.+.+ .++...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++=+.-+- .
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ViD~G~~~t~v~PV~DG~---~ 178 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-----ETGLVIDSGDSVTHVIPVVDGI---V 178 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-----CceEEEEcCCCceeeEeeeccc---c
Confidence 468999999999999988777 678888999999999999998766532 4779999999999997665332 1
Q ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCC-----CCHHHHHHHH------------------HHHHHHHHHcc
Q 005824 223 VKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDIS-----GSPRAVQRLT------------------TACERAKRTLS 279 (675)
Q Consensus 223 ~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~-----~~~~~~~~l~------------------~~~e~~K~~ls 279 (675)
+........+||++++..|.+.|........+..+. .+......+. +..++.++...
T Consensus 179 l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~ 258 (444)
T COG5277 179 LPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPA 258 (444)
T ss_pred ccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhh
Confidence 222233468999999999999987743211111111 1111111111 11122222110
Q ss_pred ---------CCCceEEEEecccCCceeEEEEeHH-HH---HHHHHHH--H-----HH-----------------------
Q 005824 280 ---------STSQTTIEIDSLYEGIDFSSVITRA-RF---EELNMDL--F-----RK----------------------- 316 (675)
Q Consensus 280 ---------~~~~~~~~i~~~~~~~~~~~~itr~-~~---~~~~~~~--~-----~~----------------------- 316 (675)
...........+.......+.+-.+ .| +.++.|- + +.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (444)
T COG5277 259 EKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGN 338 (444)
T ss_pred hhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccc
Confidence 0000111111111111112222222 11 1122222 0 11
Q ss_pred ----HHHHHHHHHHcCCCC--CCCccEEEEecCCcChHHHHHHHHHhcC-------CCcccccCCchhhHHhHHHHHHH
Q 005824 317 ----CIKHVDMCLRNGKMD--KSRVDDVVIVGGSARIPKVQQLLQEFFN-------GKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 317 ----i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~-------~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
+.+++.+.+..+..+ ......|+|+||+|.+|++.++|.+.+. ...+..+.+|...+-.||.+++.
T Consensus 339 ~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 339 DIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred cccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 445555555544322 2336899999999999999999998873 23666777999999999999886
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.06 E-value=5.2e-09 Score=105.06 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=109.1
Q ss_pred EeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhcc
Q 005824 175 KIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKK 254 (675)
Q Consensus 175 ~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~ 254 (675)
..++|..|.+.+...-.+ . .-.|+|+||..+-+..++ ++...-....+....|+..|.+.+++.|.-.
T Consensus 73 ~~~~ei~~~~~g~~~~~~--~--~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~------ 140 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--E--ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVS------ 140 (248)
T ss_pred CceEEhhHHHHHHHHHCC--C--CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCC------
Confidence 357788887665544333 1 225999999999888877 4555444566667788888888888776211
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHc----cCCCceEEEEec-ccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 005824 255 KDISGSPRAVQRLTTACERAKRTL----SSTSQTTIEIDS-LYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGK 329 (675)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~l----s~~~~~~~~i~~-~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~ 329 (675)
. ++++..+..- .-+....+..+. +.... ....+ .+++++.+.+.+...+.+.+....
T Consensus 141 ------~-------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g~~---~~di~~~~~~~va~~i~~~~~~~~ 202 (248)
T TIGR00241 141 ------V-------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAGVK---KEDILAGVYESIAERVAEMLQRLK 202 (248)
T ss_pred ------H-------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCCCC---HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1 3334333331 111122222221 00000 00112 245666666666666666665432
Q ss_pred CCCCCcc-EEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHH
Q 005824 330 MDKSRVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQ 380 (675)
Q Consensus 330 ~~~~~i~-~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~ 380 (675)
++ .|+|+||.++++++.+.+++.+ +.++..+.+|+.+.|+|||++
T Consensus 203 -----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 -----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred -----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 34 7999999999999999999999 899999999999999999973
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.98 E-value=6.1e-08 Score=96.94 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=101.0
Q ss_pred EeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhcc
Q 005824 175 KIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKK 254 (675)
Q Consensus 175 ~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~ 254 (675)
..++|..|.|.+.....+ +..-.|+|+||..+-+-.+. .++.+.-.....--.-|.-.|-+.+++.|.
T Consensus 106 ~~v~EItaha~Ga~~~~p---p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg-------- 173 (293)
T TIGR03192 106 KAITEIACHARGANYMGG---NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDLMQ-------- 173 (293)
T ss_pred cceeeHHHHHHHHHHhcC---CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHHcC--------
Confidence 358999998876544321 13348999999876654442 234443334444334454444444555551
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHccCCCceEEEEec-----ccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005824 255 KDISGSPRAVQRLTTACERAK-RTLSSTSQTTIEIDS-----LYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNG 328 (675)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K-~~ls~~~~~~~~i~~-----~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~ 328 (675)
+ +...+. +.+.+.+ ....-+....+..+. +..| ++++ +++..+...+.+.+...+.+.
T Consensus 174 --i--~leel~---~~a~~~~~~p~~Iss~CtVFAeSevi~l~~~G------~~~e---dI~aGl~~sia~rv~~~~~~~ 237 (293)
T TIGR03192 174 --I--PIADLG---PRSFDVETEPEAVSSICVVFAKSEALGLLKAG------YTKN---MVIAAYCQAMAERVVSLLERI 237 (293)
T ss_pred --C--CHHHHH---HHHHhcCCCCCCcCCcceEeccHhHHHHHHCC------CCHH---HHHHHHHHHHHHHHHHHhccc
Confidence 1 111111 1121221 222223334443332 1112 2333 344555555555555555544
Q ss_pred CCCCCCccEEEEecCCcChHHHHHHHHHhcCCCccc-ccCCchhhHHhHHHHHHHH
Q 005824 329 KMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLC-QNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 329 ~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~-~~~~p~~ava~Gaa~~a~~ 383 (675)
++. +.|+|+||.++.+.+.+.+++.+ +.++. .+.+|+.+-|.|||++|..
T Consensus 238 ~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 238 GVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 333 36899999999999999999999 67776 5778999999999999864
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.92 E-value=3.9e-09 Score=110.72 Aligned_cols=83 Identities=22% Similarity=0.345 Sum_probs=63.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEE
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAM------------AGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVS 212 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~------------Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvs 212 (675)
-.+||-.+ ..+++++++++. ||++...++. |.|++.+.... +++..++++|+|||||+++
T Consensus 90 ahIITg~~----~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 90 AVIITGET----ARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTANYA 161 (475)
T ss_pred EEEEEech----hHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceEEE
Confidence 35777664 456777777776 6665555555 99988877742 4789999999999999999
Q ss_pred EEEEeCCEEEEEEEcCCCCCcHHHHHHH
Q 005824 213 LLTIGKGIFKVKATAGDTHLGGEDFDNR 240 (675)
Q Consensus 213 v~~~~~~~~~~l~~~~~~~~GG~~id~~ 240 (675)
+++-+. +...+..++||++++..
T Consensus 162 Vf~~G~-----l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 162 LFDAGK-----VIDTACLNVGGRLIETD 184 (475)
T ss_pred EEECCE-----EEEEEEEecccceEEEC
Confidence 999776 55666789999988754
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.83 E-value=3.1e-07 Score=95.45 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=100.4
Q ss_pred EeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhcc
Q 005824 175 KIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKK 254 (675)
Q Consensus 175 ~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~ 254 (675)
.+++|-.|.+.+...-.+. .+..-.|+|+||.-.- ++++.++.+.-....+...-|+-.|-+.+.+.|.-.
T Consensus 220 ~iv~EItaha~GA~~L~p~-~~~v~TIIDIGGQDsK--~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~------ 290 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLADK-QEGPATVIDIGGMDNK--AISVWDGIPDNFTMGGICAGASGRFLEMTAKRLGVD------ 290 (404)
T ss_pred ceEEEEhhHHHHHHHhccc-CCCCcEEEEeCCCceE--EEEEcCCceeeEEEcCcccccCcHHHHHHHHHhCCC------
Confidence 3478888876554332221 1234689999996544 455556655544555544445555555555555111
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHccCCCceEEEEec-ccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHH-HHHcCCCC
Q 005824 255 KDISGSPRAVQRLTTACERAK-RTLSSTSQTTIEIDS-LYEGIDFSSVITRARFEELNMDLFRKCIKHVDM-CLRNGKMD 331 (675)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K-~~ls~~~~~~~~i~~-~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~-~l~~~~~~ 331 (675)
. ..|-+.+.+.+ +...-+....+.-+. +.. -...-.++ ++++..+...+.+.+.. +++..+..
T Consensus 291 ------i---eEl~~lA~~~~~~pv~IsS~CtVFaeSevIs--ll~~G~~~---eDIaAGl~~SIa~rv~~~l~~~~~i~ 356 (404)
T TIGR03286 291 ------I---TELGKLALKGMPEKVRMNSYCIVFGIQDLVT--ALAEGASP---EDVAAAACHSVAEQVYEQQLQEIDVR 356 (404)
T ss_pred ------H---HHHHHHHHhCCCCCCCccCcccccccHhHHH--HHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 1 12222233332 111111222221111 000 00001233 34444555555555543 34443322
Q ss_pred CCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHH
Q 005824 332 KSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 332 ~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
+.|+++||.++++.+.+.+++.+ +.++..+.+|+.+-|.|||++|+
T Consensus 357 ----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 ----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred ----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 36999999999999999999999 78999999999999999999984
No 54
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.82 E-value=2.4e-07 Score=93.70 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=105.0
Q ss_pred EeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhcc
Q 005824 175 KIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKK 254 (675)
Q Consensus 175 ~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~ 254 (675)
..++|-.|-+.+...-.+. -+ .|+||||.-+-+ +++.++...-.....-..-|.-.|-+.+++.|.-.
T Consensus 211 ~~~~Ei~ah~kgA~~f~p~--~d--tIiDIGGQD~K~--i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lgv~------ 278 (396)
T COG1924 211 KVVVEISAHAKGARYFAPD--VD--TVIDIGGQDSKV--IKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLGVD------ 278 (396)
T ss_pred cceeeeehhHHHHHHhCCC--Cc--EEEEecCcceeE--EEEeCCeeeeeEeccccccccchHHHHHHHHhCCC------
Confidence 3566666665544332221 12 899999976555 45556666555555444445444555555554111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCC
Q 005824 255 KDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDM-CLRNGKMDKS 333 (675)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~-~l~~~~~~~~ 333 (675)
+..+-+.+++.+....-+....+..+.-. ++..=.-...|+++..+...+.+.+-. +++..+...
T Consensus 279 ---------v~E~~~~A~~~~~~v~i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~- 344 (396)
T COG1924 279 ---------VEELGKLALKATPPVKINSRCAVFAESEV----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE- 344 (396)
T ss_pred ---------HHHHHHHHhcCCCCcccCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC-
Confidence 11222333443332223333333332200 000000012456666677776666655 555544332
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
-|+|+||.+....+...+++.+ +.+|..+.+|+..-|.|||+++..
T Consensus 345 ---~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 345 ---PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred ---CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 3999999999999999999999 899999999999999999999964
No 55
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.73 E-value=8.8e-08 Score=98.91 Aligned_cols=231 Identities=15% Similarity=0.202 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEE
Q 005824 125 SMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDAG-AMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFD 203 (675)
Q Consensus 125 ~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a~-~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvD 203 (675)
..+..++...-. ........+++|-|..|+...|+.|.+.+ +..+.+.+.+ .-.|..++++. .+=+|+|
T Consensus 82 e~iw~~if~~~L-~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~-------ttG~VvD 151 (372)
T KOG0676|consen 82 EKIWHHLFYSEL-LVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGR-------TTGLVVD 151 (372)
T ss_pred HHHHHHHHHHhh-ccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCC-------eeEEEEE
Confidence 555555552111 11123357999999999999999998854 5556666555 22333323332 3449999
Q ss_pred eCCCcEEE-EEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCC-CCHHHHHHHHHHHHHHHHHc---
Q 005824 204 LGGGTFDV-SLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDIS-GSPRAVQRLTTACERAKRTL--- 278 (675)
Q Consensus 204 iGggT~dv-sv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~e~~K~~l--- 278 (675)
+|.|-|++ -+++- +.+........+||+++++-+...|.+ .+.... .... +-.+.+|+.+
T Consensus 152 ~G~gvt~~vPI~eG----~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~~------eIv~diKeklCyv 216 (372)
T KOG0676|consen 152 SGDGVTHVVPIYEG----YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAEF------EIVRDIKEKLCYV 216 (372)
T ss_pred cCCCceeeeecccc----cccchhhheecccchhhHHHHHHHHHh-----cccccccccHH------HHHHHhHhhhccc
Confidence 99997755 44431 222333445789999999988777765 111111 1111 1122333322
Q ss_pred --------cC-CCceEEEEec-ccCCceeEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHcCC--CCCCCccEE
Q 005824 279 --------SS-TSQTTIEIDS-LYEGIDFSSVITRARF---EELNMDLF-----RKCIKHVDMCLRNGK--MDKSRVDDV 338 (675)
Q Consensus 279 --------s~-~~~~~~~i~~-~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~--~~~~~i~~V 338 (675)
.. .....+.... +.+|.. +.+..+.+ |-+++|.+ ..|.+.+-..+.+.. +.+....+|
T Consensus 217 ald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~ni 294 (372)
T KOG0676|consen 217 ALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENI 294 (372)
T ss_pred ccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhhe
Confidence 11 0001111110 223322 44443332 22233222 334444444444433 333346789
Q ss_pred EEecCCcChHHHHHHHHHhcC-----C--CcccccCCchhhHHhHHHHHHH
Q 005824 339 VIVGGSARIPKVQQLLQEFFN-----G--KRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 339 vLvGG~s~~p~l~~~l~~~~~-----~--~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
+|+||++..|++.+++++.+. . .++..+.+...++-.|+.+.|.
T Consensus 295 vLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 295 VLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred EEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 999999999999999998772 1 1334443334555666666553
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.72 E-value=1.8e-06 Score=85.33 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=98.0
Q ss_pred eeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEE-eCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhcc
Q 005824 176 IISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTI-GKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKK 254 (675)
Q Consensus 176 li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~-~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~ 254 (675)
.++|..|.|.+.....+ +.-.|+|+||.-+-+ +++ .++.+.-.....--.-|.-.|-+.+++.|.
T Consensus 80 ~vtEIt~ha~GA~~~~p----~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~-------- 145 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP----EARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYLG-------- 145 (262)
T ss_pred CeeEEeHHHHHHHHHCC----CCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHhC--------
Confidence 35678887766544333 233899999987765 444 234444344444334454444444455541
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 005824 255 KDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSR 334 (675)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 334 (675)
+ +. ..|-+.+.+.++...-+....+..+.-.-. -+.--.++ ++++..+.+.+.+.+...+++.+..
T Consensus 146 --i--~l---eel~~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~--- 211 (262)
T TIGR02261 146 --I--AQ---DEIGSLSQQADNPEKVSGICAVLAETDVIN-MVSRGISA---PNILKGIHESMADRLAKLLKSLGAL--- 211 (262)
T ss_pred --C--CH---HHHHHHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC---
Confidence 1 11 112222333333333333444433320000 00001233 3444555555555555555554321
Q ss_pred ccEEEEecCCcChHHHHHHHHHhcCCCc----ccccCCchhhHHhHHHHHH
Q 005824 335 VDDVVIVGGSARIPKVQQLLQEFFNGKR----LCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 335 i~~VvLvGG~s~~p~l~~~l~~~~~~~~----v~~~~~p~~ava~Gaa~~a 381 (675)
-..|+|+||.++.+.+.+.|++.+++.+ +..+.+|+.+-|.|||+++
T Consensus 212 ~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1369999999999999999999884332 5567789999999999874
No 57
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.67 E-value=2.7e-06 Score=87.34 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=104.5
Q ss_pred EeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEe-CCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhc
Q 005824 175 KIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIG-KGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKK 253 (675)
Q Consensus 175 ~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~-~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~ 253 (675)
.+++|.+|.|.+.....+ +.-.|+|+||..+-+ +++. ++.+.-.....-..-|.-.|-+.+++.|.
T Consensus 249 ~vitEItcHA~GA~~l~P----~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lg------- 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP----GTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMN------- 315 (432)
T ss_pred ceeeeHHHHHHHHHHHCC----CCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHcC-------
Confidence 356888888776544333 334899999987765 4443 34444344444344555555555555441
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHccCCCceEEEEecccCCceeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 005824 254 KKDISGSPRAVQRLTTACERAKRTLSSTSQTTIEIDSLYEGIDFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKS 333 (675)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 333 (675)
+ +. ..|-..+.+.++...-+....+..+.-.-. -+.--+++ ++++..+...+...+...+.+.. .
T Consensus 316 ---i--~l---eEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~ 380 (432)
T TIGR02259 316 ---M--GL---HELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG---G 380 (432)
T ss_pred ---C--CH---HHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---C
Confidence 1 11 122233334443333344444443320000 00001233 34455566666666666666542 1
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC----CCcccccCCchhhHHhHHHHHH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN----GKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~----~~~v~~~~~p~~ava~Gaa~~a 381 (675)
.-+.|+|+||.++.+.+.+.|++.+. +.+|..+.+|+.+-|.|||++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 12479999999999999999999994 4678889999999999999975
No 58
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.62 E-value=1.1e-05 Score=92.01 Aligned_cols=327 Identities=16% Similarity=0.246 Sum_probs=182.9
Q ss_pred eecHHHHHHhhh----CcCchhhcchhhhCCCC--CC------hhhhhh----cccCCeEEEeCCCCCceEEE-EEcC--
Q 005824 53 FAGNAAKNQLAM----NPTNTVFDAKRLIGRRF--SD------VSVQED----IKLWPFKVIAGPNDKPMIAV-KYKG-- 113 (675)
Q Consensus 53 ~~G~~A~~~~~~----~~~~~~~~~k~~lg~~~--~~------~~v~~~----~~~~~~~~~~~~~~~~~~~v-~~~~-- 113 (675)
-+|.+|...... +....+.+.||+|=... .. ...... ....|+.-..+++|.+...+ ....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 478888877643 45556778888873211 00 000000 01122222235556665555 1111
Q ss_pred --ceeeeeHHHHHHHHHHHHHHHHHHHhCC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 005824 114 --GEKKYAAEDISSMVLAKMREIAKAYLGS--------------NVKNAVVTVPAYFTDSQRQATKDAGAMA-------- 169 (675)
Q Consensus 114 --~~~~~~~~~l~~~~L~~l~~~a~~~~~~--------------~~~~~vitvP~~~~~~~r~~l~~a~~~A-------- 169 (675)
-.-.||-..++..+|..+..+|.-+.+. ....+++|+|+.-+..+|+.+++.++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1234666788888888888887766543 2467999999999999999998888766
Q ss_pred CCc--------------------eeE-eeChhHHHHHHhcc------------------ccC---------CCCCceEEE
Q 005824 170 GLN--------------------VLK-IISEPTAAAIAYGL------------------HRK---------ASSEKNVLI 201 (675)
Q Consensus 170 gl~--------------------~v~-li~Ep~Aaa~~~~~------------------~~~---------~~~~~~vlv 201 (675)
|.. .+. =-+|.++.-+-|.. .++ ..+.-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 321 011 12455544332211 111 113457889
Q ss_pred EEeCCCcEEEEEEEEe----CCE-EEEEE---EcCCCCCcHHHHHHHHHHHH-HHHHHhh----------------ccCC
Q 005824 202 FDLGGGTFDVSLLTIG----KGI-FKVKA---TAGDTHLGGEDFDNRMVNHF-IQEFKRK----------------KKKD 256 (675)
Q Consensus 202 vDiGggT~dvsv~~~~----~~~-~~~l~---~~~~~~~GG~~id~~i~~~l-~~~~~~~----------------~~~~ 256 (675)
|||||||||+.|-+.. .+. ..+.. ...+..+.|++|-..+++.+ +..+... ++.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999987765 221 21111 12335789999988887654 2222211 1111
Q ss_pred CCCCH-HHH-------------HHHHHHHHHHHHHccCCCceEEEEecc---------------------------cCCc
Q 005824 257 ISGSP-RAV-------------QRLTTACERAKRTLSSTSQTTIEIDSL---------------------------YEGI 295 (675)
Q Consensus 257 ~~~~~-~~~-------------~~l~~~~e~~K~~ls~~~~~~~~i~~~---------------------------~~~~ 295 (675)
-.... +.. .+++.++|+.-. +.........+..+ ++=.
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~-~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDP-LDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 00000 000 011222222110 00000111111100 0112
Q ss_pred eeEEEEeHHHHHHHHH---HHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCC----------C-
Q 005824 296 DFSSVITRARFEELNM---DLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNG----------K- 361 (675)
Q Consensus 296 ~~~~~itr~~~~~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~----------~- 361 (675)
++.+.|+..++.+.+. -.+..++..+-+++..- +-|-++|+|=-|++|+|+..+++..+- .
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4567889999988775 66777777777777653 346899999999999999999998840 0
Q ss_pred --------cccccCCchhhHHhHHHHHHHHHc
Q 005824 362 --------RLCQNINPDEAVAYGAAVQAAVLS 385 (675)
Q Consensus 362 --------~v~~~~~p~~ava~Gaa~~a~~l~ 385 (675)
+-....||...||+||.+......
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 111445999999999998775444
No 59
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.51 E-value=1.9e-08 Score=64.33 Aligned_cols=29 Identities=41% Similarity=1.109 Sum_probs=14.2
Q ss_pred ccCCcccCCCCC-CcccccCCCceeccccc
Q 005824 444 SECNGCKRPAFG-LMYRCELCNFNLHIPCM 472 (675)
Q Consensus 444 ~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca 472 (675)
+.|++|++++.+ ..|+|.+|||+||+.||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 469999999988 88999999999999996
No 60
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.49 E-value=2.4e-08 Score=63.93 Aligned_cols=29 Identities=41% Similarity=0.962 Sum_probs=14.2
Q ss_pred cccccccCCCCC-ceeecCCCCcccccccC
Q 005824 510 KHCHACARPADG-FVYHCEEKGRNLHPCCF 538 (675)
Q Consensus 510 ~~C~~C~~~~~g-~~Y~C~~C~f~lH~~Ca 538 (675)
|.|++|++++.+ +.|+|.+|+|+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 359999999988 99999999999999986
No 61
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.49 E-value=6.1e-06 Score=78.61 Aligned_cols=194 Identities=16% Similarity=0.202 Sum_probs=120.6
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEE
Q 005824 143 VKNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIF 221 (675)
Q Consensus 143 ~~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~ 221 (675)
...+.+|-|.--....|+.|.+ ..+..||..+.+.-...-+.++-++... +|+|-|.|-|-+.-+.- .+
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG-------vVvDSGDGVTHi~PVye---~~ 170 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG-------VVVDSGDGVTHIVPVYE---GF 170 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce-------EEEecCCCeeEEeeeec---ce
Confidence 3478999999999899998877 5688899998887766666665554433 89999999887754331 11
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcc-----------CCCceEEEEec
Q 005824 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTLS-----------STSQTTIEIDS 290 (675)
Q Consensus 222 ~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls-----------~~~~~~~~i~~ 290 (675)
..-...+...+.|+++++-++++|..+ .+...-..+- +..+..|+.|- -..++++-++.
T Consensus 171 ~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~ 240 (389)
T KOG0677|consen 171 VLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVES 240 (389)
T ss_pred ehhhhhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeee
Confidence 112224456899999999999988654 2221112222 23334444431 01122222222
Q ss_pred --ccCCceeEEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHcCCCCC--CCccEEEEecCCcChHHHHHHHHHhc
Q 005824 291 --LYEGIDFSSVITRARFE---ELNMDLF-----RKCIKHVDMCLRNGKMDK--SRVDDVVIVGGSARIPKVQQLLQEFF 358 (675)
Q Consensus 291 --~~~~~~~~~~itr~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~l~~~l~~~~ 358 (675)
+.+|. .+++-.+.|+ .+|+|-+ ..+.+++-..++.+.++. .--++|+|+||++.-|++..+|++.+
T Consensus 241 YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 241 YTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred eecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHH
Confidence 33444 3344455553 4555533 235566666666665442 22478999999999999999988776
No 62
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.45 E-value=1.1e-07 Score=60.64 Aligned_cols=28 Identities=46% Similarity=0.959 Sum_probs=26.9
Q ss_pred ccccccCCCCCc-eeecCCCCcccccccC
Q 005824 511 HCHACARPADGF-VYHCEEKGRNLHPCCF 538 (675)
Q Consensus 511 ~C~~C~~~~~g~-~Y~C~~C~f~lH~~Ca 538 (675)
.|++|++.+.|+ +|+|..|+|.||+.||
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 599999999999 9999999999999997
No 63
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.41 E-value=5.9e-06 Score=80.04 Aligned_cols=192 Identities=18% Similarity=0.137 Sum_probs=109.3
Q ss_pred HHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHH
Q 005824 166 GAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (675)
Q Consensus 166 ~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l 245 (675)
-+..|.+...-=.|+++|.++...... .+..+.|+|+|||+||.+++...+ .+..+.. .-.|+.++..|...|
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG--t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHl----AGAG~mVTmlI~sEL 177 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG--TDKPLAILDMGGGSTDASIINRDG-EVTAIHL----AGAGNMVTMLINSEL 177 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TTS--EEEEEE----E-SHHHHHHHHHHHC
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC--CCCCeEEEecCCCcccHHHhCCCC-cEEEEEe----cCCchhhHHHHHHhh
Confidence 345577777777899999998876555 567789999999999999998655 2322222 235788887776554
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHcc----------CCCceEEEEecc------------cCCc--eeEEEE
Q 005824 246 IQEFKRKKKKDISGSPRAVQRLTTACERAKRTLS----------STSQTTIEIDSL------------YEGI--DFSSVI 301 (675)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls----------~~~~~~~~i~~~------------~~~~--~~~~~i 301 (675)
- .+ . +..+|..|+--- ..+.+...++.. .++. .+...+
T Consensus 178 G--------l~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 178 G--------LE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp T---------S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred C--------CC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 1 10 0 145677776310 000011111110 0111 111123
Q ss_pred eHHHHHHHHHHHHHHH-HHHHHHHHHcCCCC--CCCccEEEEecCCcChHHHHHHHHHhcCCC-------cccccCCchh
Q 005824 302 TRARFEELNMDLFRKC-IKHVDMCLRNGKMD--KSRVDDVVIVGGSARIPKVQQLLQEFFNGK-------RLCQNINPDE 371 (675)
Q Consensus 302 tr~~~~~~~~~~~~~i-~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~-------~v~~~~~p~~ 371 (675)
+-+.+..+=+..-+++ .....++|+....+ ..+|+.|+|+||++.-.-|.+.+.+.+... +++-..-|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3444444333332322 23444566654433 367899999999999888899999888533 5566668999
Q ss_pred hHHhHHHHHHH
Q 005824 372 AVAYGAAVQAA 382 (675)
Q Consensus 372 ava~Gaa~~a~ 382 (675)
|||.|+++.-+
T Consensus 320 AVATGLvlsy~ 330 (332)
T PF08841_consen 320 AVATGLVLSYA 330 (332)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998643
No 64
>PRK13317 pantothenate kinase; Provisional
Probab=98.39 E-value=6.6e-05 Score=75.93 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=43.5
Q ss_pred CccEEEEec-CCcChHHHHHHHHHhcC--CCcccccCCchhhHHhHHHHHHH
Q 005824 334 RVDDVVIVG-GSARIPKVQQLLQEFFN--GKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 334 ~i~~VvLvG-G~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
.++.|+++| |.+..|.+++.+++.+. +.++..+.+|+.+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 346899999 79999999999999884 67888999999999999999875
No 65
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.13 E-value=1.5e-06 Score=55.38 Aligned_cols=29 Identities=38% Similarity=0.965 Sum_probs=27.1
Q ss_pred ccCCcccCCCCCC-cccccCCCceeccccc
Q 005824 444 SECNGCKRPAFGL-MYRCELCNFNLHIPCM 472 (675)
Q Consensus 444 ~~C~~C~~~~~g~-~Y~C~~C~f~lH~~Ca 472 (675)
+.|+.|.+.+.+. +|+|+.|+|.||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4699999999998 9999999999999997
No 66
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=98.11 E-value=1.3e-06 Score=60.82 Aligned_cols=31 Identities=32% Similarity=0.975 Sum_probs=28.5
Q ss_pred cCCcccCCCCCCcccccCC-CceecccccccC
Q 005824 445 ECNGCKRPAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 445 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
.|++|++++.|.+|+|..| ||+|+..|...+
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 5999999999999999999 999999998644
No 67
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.95 E-value=2.7e-05 Score=82.23 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=56.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeE---eeChhHHHHHHhccccC-CCCCceEEEEEeCCCcEEEEEEEEeCCE
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVLK---IISEPTAAAIAYGLHRK-ASSEKNVLIFDLGGGTFDVSLLTIGKGI 220 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~v~---li~Ep~Aaa~~~~~~~~-~~~~~~vlvvDiGggT~dvsv~~~~~~~ 220 (675)
-++||==+.-.+++++.+...+..||==++. --.|+.-|+.+.+.... ......++=+|+||||+.+++++.++
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 3667666666677788888888888721111 12355555444333222 23567888999999999999999765
Q ss_pred EEEEEEcCCCCCcHHHH
Q 005824 221 FKVKATAGDTHLGGEDF 237 (675)
Q Consensus 221 ~~~l~~~~~~~~GG~~i 237 (675)
+......++||+.|
T Consensus 165 ---v~~T~cl~IGGRLi 178 (473)
T PF06277_consen 165 ---VIDTACLDIGGRLI 178 (473)
T ss_pred ---EEEEEEEeeccEEE
Confidence 33344478888753
No 68
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=97.87 E-value=0.00036 Score=69.06 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=61.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHH-hccccCC---CCCceEEEEEeCCCcEEEEEEEEe
Q 005824 143 VKNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIA-YGLHRKA---SSEKNVLIFDLGGGTFDVSLLTIG 217 (675)
Q Consensus 143 ~~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~-~~~~~~~---~~~~~vlvvDiGggT~dvsv~~~~ 217 (675)
..++++|-|..--+.-.+.+.+ ..+..+++.+.-.+-.+-+|.. |..+.+. ......+|||.|-+-|-+.-+-.+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g 172 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKG 172 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcC
Confidence 4578999997655555555544 5677777765444433333333 3333221 235689999999997766443322
Q ss_pred CCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 218 KGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 218 ~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
.... -+.. ...+||..+++.|.+.+.
T Consensus 173 ~~~~--qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 173 IPYY--QAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred cchh--hceE-EeecchHHHHHHHHHHhh
Confidence 2111 1222 368999999999988773
No 69
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.82 E-value=0.0022 Score=69.26 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred eEEEEeHHHHHHHHHHH---HHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCC------------
Q 005824 297 FSSVITRARFEELNMDL---FRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGK------------ 361 (675)
Q Consensus 297 ~~~~itr~~~~~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~------------ 361 (675)
+.+.|.-.++.+.+-.. +......+-+++.- -+-|-++|+|--+++|+++..+....+ .
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 34456666665544332 33444444444443 234689999999999999999998763 1
Q ss_pred --------cccccCCchhhHHhHHHHHHHHHc
Q 005824 362 --------RLCQNINPDEAVAYGAAVQAAVLS 385 (675)
Q Consensus 362 --------~v~~~~~p~~ava~Gaa~~a~~l~ 385 (675)
+--...||...+|.||-+-+..+.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 112334899999999988776544
No 70
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.70 E-value=0.016 Score=59.00 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHH----hcCCCcccccCCchhhHHhHHHHHH
Q 005824 307 EELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQE----FFNGKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~----~~~~~~v~~~~~p~~ava~Gaa~~a 381 (675)
.++++...+.+.+.+...+.+...... .|+|+||......+.+.+.+ .++..++..+..|....+.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 456666677777777777777543321 29999999999777766643 3345566677789999999999986
No 71
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.69 E-value=0.0089 Score=60.21 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCccEEEEecC-CcChHHHHHHHHHhc--CCCcccccCCchhhHHhHHHH
Q 005824 333 SRVDDVVIVGG-SARIPKVQQLLQEFF--NGKRLCQNINPDEAVAYGAAV 379 (675)
Q Consensus 333 ~~i~~VvLvGG-~s~~p~l~~~l~~~~--~~~~v~~~~~p~~ava~Gaa~ 379 (675)
..++.|+++|| ....|.+++.+...+ .+.++..+.++....|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45679999999 778899999998766 256888899999999999986
No 72
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.69 E-value=0.00033 Score=73.31 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=89.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHhCCCC-----CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeeChhHHHHHHhcc
Q 005824 116 KKYAAEDISSMVLAKMREIAKAYLGSNV-----KNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGL 189 (675)
Q Consensus 116 ~~~~~~~l~~~~L~~l~~~a~~~~~~~~-----~~~vitvP~~~~~~~r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~~~ 189 (675)
..++..++.+++-+-+.....+.+.-+. -.+|+-||-.|...+.+.+.. .+...||..+.++-|+.|+.++.++
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 4557777777776666555555555443 358999999999888766555 6778899999999999999988776
Q ss_pred ccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 190 HRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 190 ~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
. ...|||||+.+|.++.++-+- ....+.-....||++|++.|+-++.
T Consensus 275 s-------s~CVVdiGAQkTsIaCVEdGv---s~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 S-------SACVVDIGAQKTSIACVEDGV---SLPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred c-------ceeEEEccCcceeEEEeecCc---cccCceEEeccCCchHHHHHHHHHH
Confidence 4 349999999999999888542 1122222357899999999987664
No 73
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.66 E-value=2.3e-05 Score=54.93 Aligned_cols=30 Identities=27% Similarity=0.876 Sum_probs=26.7
Q ss_pred cCCccc-CCCCCCcccccCC-Cceeccccccc
Q 005824 445 ECNGCK-RPAFGLMYRCELC-NFNLHIPCMFI 474 (675)
Q Consensus 445 ~C~~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~~ 474 (675)
.|++|+ .++.|.+|+|..| ||+|+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 599999 5678999999999 99999999763
No 74
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.52 E-value=0.0035 Score=69.36 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHH
Q 005824 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 159 r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id 238 (675)
.+.+.++-+..|++.-.+-.|-||-..+.+.....+..+..+|+|+|||+|.+++++-+. +....+.++|.-.+.
T Consensus 94 ~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~-----~~~~~Sl~lG~vrl~ 168 (496)
T PRK11031 94 DEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQ-----ATSLFSLSMGCVTWL 168 (496)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCc-----eeeeeEEeccchHHH
Confidence 445555667779987655556666555444443333334689999999999999987443 233445688888776
Q ss_pred HHHH
Q 005824 239 NRMV 242 (675)
Q Consensus 239 ~~i~ 242 (675)
+.+.
T Consensus 169 e~f~ 172 (496)
T PRK11031 169 ERYF 172 (496)
T ss_pred HHhc
Confidence 6554
No 75
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.42 E-value=9.4e-05 Score=51.49 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=33.0
Q ss_pred ccccccCCCCCceeecCCC-CcccccccCCCCcceeeCCeeeE
Q 005824 511 HCHACARPADGFVYHCEEK-GRNLHPCCFNLPRKLAIGSVEFV 552 (675)
Q Consensus 511 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lp~~i~~~~h~~~ 552 (675)
.||.|++++.|..|+|..| +|||+..|...+ .|..|++.
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~---~H~~H~f~ 41 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG---VHPEHAML 41 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC---CCCCCCEE
Confidence 4999999999999999999 699999999876 44556653
No 76
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=97.26 E-value=2.4e-05 Score=82.12 Aligned_cols=42 Identities=36% Similarity=0.721 Sum_probs=37.2
Q ss_pred ccceecccccCccCCcccCCCCCCc---ccccCCCceeccccccc
Q 005824 433 HDLQLKNHKILSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 474 (675)
Q Consensus 433 H~l~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 474 (675)
|.|-...+..|..||.|+|..+|.. -+|+.|+.+.|+.||..
T Consensus 146 H~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k 190 (888)
T KOG4236|consen 146 HTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK 190 (888)
T ss_pred ceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence 7777778888999999999998854 99999999999999865
No 77
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=97.22 E-value=0.00022 Score=50.70 Aligned_cols=32 Identities=34% Similarity=0.982 Sum_probs=28.9
Q ss_pred ccCCcccCCCCCCcccccCC-CceecccccccC
Q 005824 444 SECNGCKRPAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 444 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
+.|++|+.++.|.+|+|..| ||+|...|...+
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 46999999999999999999 599999998765
No 78
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.17 E-value=0.00032 Score=49.00 Aligned_cols=30 Identities=30% Similarity=0.929 Sum_probs=26.7
Q ss_pred cCCcccC-CCCCCcccccCC-Cceeccccccc
Q 005824 445 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 474 (675)
Q Consensus 445 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 474 (675)
.||+|.. ++.|.+|+|..| ||+|.+.|...
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 5999984 799999999999 89999999754
No 79
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.17 E-value=0.034 Score=59.29 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=51.3
Q ss_pred eeEEEEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHH-HhcCCCcccccCCchhhHH
Q 005824 296 DFSSVITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQ-EFFNGKRLCQNINPDEAVA 374 (675)
Q Consensus 296 ~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~-~~~~~~~v~~~~~p~~ava 374 (675)
.-.+.||..|++++ +---..|..-++-.+++++++..+++.|+|.||++.-=-+.+.+. ..+|....-....--.++-
T Consensus 290 ~~~i~itq~DIr~~-qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al 368 (412)
T PF14574_consen 290 GDDIYITQKDIREF-QLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAAL 368 (412)
T ss_dssp SS-EEEEHHHHHHH-HHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHH
T ss_pred CCCEEEeHHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHH
Confidence 44678999999876 333445667777888999999999999999999998766666665 2334332222222234566
Q ss_pred hHHHHHH
Q 005824 375 YGAAVQA 381 (675)
Q Consensus 375 ~Gaa~~a 381 (675)
.||.+..
T Consensus 369 ~GA~~~L 375 (412)
T PF14574_consen 369 AGARMAL 375 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 80
>PRK10854 exopolyphosphatase; Provisional
Probab=97.16 E-value=0.017 Score=64.37 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHH
Q 005824 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 159 r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id 238 (675)
.+.+.++-+..|++.-.+-.|-+|-..+.+.....+.....+|+|+|||+|.+++++-++... ..+.++|.-.+.
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~-----~~S~~lG~vrl~ 173 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL-----VESRRMGCVSFA 173 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE-----eEEEecceeeHH
Confidence 344555566679877545555555544444443333345689999999999999987543111 122378887766
Q ss_pred HHHH
Q 005824 239 NRMV 242 (675)
Q Consensus 239 ~~i~ 242 (675)
+.+.
T Consensus 174 e~f~ 177 (513)
T PRK10854 174 QLYF 177 (513)
T ss_pred hhhC
Confidence 6543
No 81
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.09 E-value=0.00028 Score=50.19 Aligned_cols=32 Identities=31% Similarity=0.818 Sum_probs=28.7
Q ss_pred ccCCcccC-CCCCCcccccCCC---ceecccccccC
Q 005824 444 SECNGCKR-PAFGLMYRCELCN---FNLHIPCMFID 475 (675)
Q Consensus 444 ~~C~~C~~-~~~g~~Y~C~~C~---f~lH~~Ca~~~ 475 (675)
+.|++|.. ++.|.+|+|..|. |+|...|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 56999998 8999999999996 99999998755
No 82
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.98 E-value=0.00016 Score=73.91 Aligned_cols=96 Identities=22% Similarity=0.469 Sum_probs=65.9
Q ss_pred ccceecccccCccCCcccCCCCCC---cccccCCCceeccccccc-----C---CcCccccCCCCCcceEECCCCCCCCC
Q 005824 433 HDLQLKNHKILSECNGCKRPAFGL---MYRCELCNFNLHIPCMFI-----D---RKPAAKHEFFGNSTFKSLPKLPGICS 501 (675)
Q Consensus 433 H~l~l~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~-----~---~~~~~~h~~~~~~~l~~~~~~~~~~~ 501 (675)
|.+...-.+.|..|..|+..++|. -++|..|-|.+|+.|-.. | .-+..+.|.. +|.++.+.-..
T Consensus 46 HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~-kHkf~~~tYss---- 120 (683)
T KOG0696|consen 46 HKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRS-KHKFKIHTYSS---- 120 (683)
T ss_pred ceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCccc-ccceeeeecCC----
Confidence 544433445688899999998763 399999999999999543 1 1133344432 35665543211
Q ss_pred CccccccccccccccCCCCCc---eeecCCCCcccccccCCC
Q 005824 502 TRDCRDCNKHCHACARPADGF---VYHCEEKGRNLHPCCFNL 540 (675)
Q Consensus 502 ~~~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~l 540 (675)
..+||-||.-..|. -.+|..|+..+|..|...
T Consensus 121 -------PTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~n 155 (683)
T KOG0696|consen 121 -------PTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVEN 155 (683)
T ss_pred -------CchhhhHHHHHHHHHhcccccccccchHHHHHhhc
Confidence 15699999866554 367999999999999854
No 83
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.97 E-value=0.00031 Score=47.70 Aligned_cols=30 Identities=27% Similarity=0.726 Sum_probs=26.5
Q ss_pred cCCcccC-CCCCCcccccCC-Cceeccccccc
Q 005824 445 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 474 (675)
Q Consensus 445 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 474 (675)
.||+|.. |+.|.+|+|..| ||+|.+.|...
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 5999986 789999999998 99999999653
No 84
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.92 E-value=0.0019 Score=64.22 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=50.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeE---eeChhHHHHHHhcccc-CCCCCceEEEEEeCCCcEEEEEEEEeCCEE
Q 005824 146 AVVTVPAYFTDSQRQATKDAGAMAGLNVLK---IISEPTAAAIAYGLHR-KASSEKNVLIFDLGGGTFDVSLLTIGKGIF 221 (675)
Q Consensus 146 ~vitvP~~~~~~~r~~l~~a~~~Agl~~v~---li~Ep~Aaa~~~~~~~-~~~~~~~vlvvDiGggT~dvsv~~~~~~~~ 221 (675)
++||=-+.-..+.|..+......||==++. --.|+.-|.-+.+... ..++...++=+|+||||+.++++..++
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk--- 166 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK--- 166 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc---
Confidence 566655555566666666555555521111 1234444433332222 223557788899999999999998766
Q ss_pred EEEEEcCCCCCcHHHH
Q 005824 222 KVKATAGDTHLGGEDF 237 (675)
Q Consensus 222 ~~l~~~~~~~~GG~~i 237 (675)
+.-....++||+.|
T Consensus 167 --v~dTaCLdiGGRLi 180 (473)
T COG4819 167 --VSDTACLDIGGRLI 180 (473)
T ss_pred --cccceeeecCcEEE
Confidence 33344467888743
No 85
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.77 E-value=0.0024 Score=61.74 Aligned_cols=75 Identities=24% Similarity=0.300 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-CCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHH
Q 005824 307 EELNMDLFRKCIKHVDMCLRNGKMD-KSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
.++.+-+++.+.-.++..++..... ...++.|+++||+++++.+.+.+.+.+ +.+|....+ .++.+.|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 3444444555444444444432111 245899999999999999999999999 788877644 89999999999864
No 86
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=96.72 E-value=0.001 Score=49.03 Aligned_cols=42 Identities=24% Similarity=0.556 Sum_probs=30.9
Q ss_pred ccceecccccCccCCcccCCCCC---CcccccCCCceeccccccc
Q 005824 433 HDLQLKNHKILSECNGCKRPAFG---LMYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 433 H~l~l~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 474 (675)
|.+...+...+..|+.|++.++| ..|+|+.|++..|+.|...
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 34444555678889999999855 3399999999999999754
No 87
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=96.63 E-value=0.0011 Score=47.73 Aligned_cols=31 Identities=29% Similarity=0.831 Sum_probs=27.8
Q ss_pred cCCccc-CCCCCCcccccCC-CceecccccccC
Q 005824 445 ECNGCK-RPAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 445 ~C~~C~-~~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
.|++|+ .++.|.+|+|..| ||+|...|....
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence 599999 7789999999999 999999997654
No 88
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=96.61 E-value=0.0011 Score=47.64 Aligned_cols=31 Identities=23% Similarity=0.895 Sum_probs=27.9
Q ss_pred cCCcccC-CCCCCcccccCC-CceecccccccC
Q 005824 445 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 445 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
.|++|.. ++.|.+|+|..| ||+|...|....
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKG 34 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence 5999998 899999999999 999999997654
No 89
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.55 E-value=0.0045 Score=54.44 Aligned_cols=50 Identities=14% Similarity=0.309 Sum_probs=28.1
Q ss_pred EEEEEeCCCcEEEEEEEEeC-CEEEEEEEcCC--CCCcHHHHH--HHHHHHHHHH
Q 005824 199 VLIFDLGGGTFDVSLLTIGK-GIFKVKATAGD--THLGGEDFD--NRMVNHFIQE 248 (675)
Q Consensus 199 vlvvDiGggT~dvsv~~~~~-~~~~~l~~~~~--~~~GG~~id--~~i~~~l~~~ 248 (675)
++++|+|++++.+.+++.+. +.++++..... ..+=+..|+ +.+.+-+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a 55 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIA 55 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHH
Confidence 58999999999999999744 22333322110 111178888 7777666443
No 90
>PF13941 MutL: MutL protein
Probab=96.53 E-value=0.011 Score=63.45 Aligned_cols=41 Identities=24% Similarity=0.484 Sum_probs=31.2
Q ss_pred EEEEecccccEEEEEEE--CCeEEEEecCCCCcccceEEEEeCCceeec
Q 005824 9 GIGIDLGTTYSCVGVWQ--HNRVEIIANDQGNRTTPSYVAFTKKERFAG 55 (675)
Q Consensus 9 viGID~GTt~s~va~~~--~g~~~~l~~~~g~~~~PS~v~~~~~~~~~G 55 (675)
++.+|||||+|++..++ .+..+++ ++...||.| .+.++..|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~~Dv~~G 44 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EPGDVTIG 44 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--CcccHHHH
Confidence 68899999999999997 7777777 556778877 22345555
No 91
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.52 E-value=0.0015 Score=46.68 Aligned_cols=31 Identities=45% Similarity=1.073 Sum_probs=27.2
Q ss_pred cCCcccC-CCCCCcccccCC-CceecccccccC
Q 005824 445 ECNGCKR-PAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 445 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
.|++|+. ++.|.+|+|..| ||+|...|....
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g 34 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhCC
Confidence 5999995 689999999999 999999997543
No 92
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.52 E-value=0.002 Score=46.41 Aligned_cols=32 Identities=25% Similarity=0.778 Sum_probs=27.7
Q ss_pred ccCCcccCCCCC-CcccccCC-CceecccccccC
Q 005824 444 SECNGCKRPAFG-LMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 444 ~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
+.|++|...+.+ .+|+|..| ||+|...|....
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence 469999988765 88999999 999999997654
No 93
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.52 E-value=0.0016 Score=46.26 Aligned_cols=40 Identities=25% Similarity=0.572 Sum_probs=33.1
Q ss_pred ccccccCCCCCceeecCCCC-cccccccCCCCcceee-CCeee
Q 005824 511 HCHACARPADGFVYHCEEKG-RNLHPCCFNLPRKLAI-GSVEF 551 (675)
Q Consensus 511 ~C~~C~~~~~g~~Y~C~~C~-f~lH~~Ca~lp~~i~~-~~h~~ 551 (675)
.||.|++++.|..|+|..|. |+|...|...+. -.| ..|++
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~-~~H~~~H~~ 43 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK-KGHPPDHSF 43 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc-CCCCCCCCE
Confidence 59999999999999999998 999999999876 223 25554
No 94
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.50 E-value=0.0017 Score=45.59 Aligned_cols=30 Identities=23% Similarity=0.631 Sum_probs=26.8
Q ss_pred ccccccC-CCCCceeecCCC-CcccccccCCC
Q 005824 511 HCHACAR-PADGFVYHCEEK-GRNLHPCCFNL 540 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~l 540 (675)
.||.|++ ++.|..|+|..| +|||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 4999995 678999999999 69999999974
No 95
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.47 E-value=0.0017 Score=46.22 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=32.4
Q ss_pred ccccccC-CCCCceeecCCCC---cccccccCCCCcceee-CCeee
Q 005824 511 HCHACAR-PADGFVYHCEEKG---RNLHPCCFNLPRKLAI-GSVEF 551 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C~---f~lH~~Ca~lp~~i~~-~~h~~ 551 (675)
.||.|+. ++.|..|+|..|. |||...|...+. .| ..|++
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~--~H~~~H~~ 45 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE--SHQEDHWL 45 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC--CCCCCCce
Confidence 4999998 8899999999998 999999998776 33 34544
No 96
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.35 E-value=0.46 Score=49.57 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=31.2
Q ss_pred HcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEE
Q 005824 168 MAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLT 215 (675)
Q Consensus 168 ~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~ 215 (675)
..|+ ++.+.++..|+|++-.........++++++.+|.|- -.+++.
T Consensus 96 ~~~~-pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 96 RVGL-PVVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHCC-CEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 3465 478999999999876543333345788999999875 445443
No 97
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=96.25 E-value=0.032 Score=59.48 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=75.6
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEeeChhHHHHHHhccccCCCCCc
Q 005824 119 AAEDISSMVLAKMREIAKAYLGSNVKNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLHRKASSEK 197 (675)
Q Consensus 119 ~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~l~~a-~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~ 197 (675)
+--++...+|.|+.....-.-..-...+++|-+..-....|+.|.+. .+..|++.|.+=-+..=+.+ .+.......
T Consensus 92 tNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~---hN~~~~~~~ 168 (645)
T KOG0681|consen 92 TNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFY---HNYGKSSNK 168 (645)
T ss_pred ccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHh---hccCcccCc
Confidence 34455555555554432211111123478888888778889998885 56678888765433322222 222222334
Q ss_pred eEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 005824 198 NVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQE 248 (675)
Q Consensus 198 ~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~ 248 (675)
.-+||++|..+|.+-.+.-+.. ++....-.++||.....-|.+++..+
T Consensus 169 ~~liis~g~~~T~vipvldG~~---il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPVLDGRL---ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ceEEEecCCCcceeEEEecCch---hhhcceeeccCcchHHHHHHHHHhcc
Confidence 7899999999998876664432 12333447899998888877777554
No 98
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.14 E-value=0.0019 Score=45.87 Aligned_cols=32 Identities=31% Similarity=0.895 Sum_probs=25.5
Q ss_pred CccCCcccC-CCCCCcccccCC-Cceeccccccc
Q 005824 443 LSECNGCKR-PAFGLMYRCELC-NFNLHIPCMFI 474 (675)
Q Consensus 443 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~~ 474 (675)
.+.|++|+. ++.|.+|+|..| ||+|...|...
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 467999998 788999999999 89999999754
No 99
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.13 E-value=0.0033 Score=44.41 Aligned_cols=31 Identities=32% Similarity=0.750 Sum_probs=27.2
Q ss_pred cCCcccCCCCCCcccccCC-CceecccccccC
Q 005824 445 ECNGCKRPAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 445 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
.||+|.....+.+|+|-.| ||+|...|....
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhCC
Confidence 4999998888889999999 999999996543
No 100
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.13 E-value=0.01 Score=56.74 Aligned_cols=30 Identities=40% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCceeEeeChhHHHHHH
Q 005824 157 SQRQATKDAGAMAGLNVLKIISEPTAAAIA 186 (675)
Q Consensus 157 ~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~ 186 (675)
...+.+.++++.+|++...++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457889999999999999999999998754
No 101
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.04 E-value=0.1 Score=53.95 Aligned_cols=76 Identities=22% Similarity=0.306 Sum_probs=44.0
Q ss_pred HHHHHH-HHHHcCCceeEeeChhHHHHHHh-ccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHH
Q 005824 159 RQATKD-AGAMAGLNVLKIISEPTAAAIAY-GLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGED 236 (675)
Q Consensus 159 r~~l~~-a~~~Agl~~v~li~Ep~Aaa~~~-~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~ 236 (675)
++.+.+ .-+..|++.- +++..+=|.+.| +........ ..+++|+|||+|.++.+.-++ +....+.++|...
T Consensus 87 ~~~~~~~i~~~tgi~i~-visg~eEa~l~~~gv~~~~~~~-~~~v~DiGGGSte~~~~~~~~-----~~~~~Sl~lG~vr 159 (300)
T TIGR03706 87 GPEFLREAEAILGLPIE-VISGEEEARLIYLGVAHTLPIA-DGLVVDIGGGSTELILGKDFE-----PGEGVSLPLGCVR 159 (300)
T ss_pred HHHHHHHHHHHHCCCeE-EeChHHHHHHHHHHHHhCCCCC-CcEEEEecCCeEEEEEecCCC-----EeEEEEEccceEE
Confidence 334444 4456788764 555555444444 333222222 249999999999999886443 2233345677766
Q ss_pred HHHHH
Q 005824 237 FDNRM 241 (675)
Q Consensus 237 id~~i 241 (675)
+.+.+
T Consensus 160 l~e~f 164 (300)
T TIGR03706 160 LTEQF 164 (300)
T ss_pred hHHhh
Confidence 66553
No 102
>PRK09557 fructokinase; Reviewed
Probab=96.02 E-value=1.4 Score=45.62 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=26.3
Q ss_pred cCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCC
Q 005824 169 AGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGG 207 (675)
Q Consensus 169 Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGgg 207 (675)
.++ ++.+.++..|+|++-.........++++.+.+|.|
T Consensus 96 ~~~-pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNR-EVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HCC-CEEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 366 57799999999988654333334467788888754
No 103
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.14 Score=56.13 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEe
Q 005824 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIG 217 (675)
Q Consensus 159 r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~ 217 (675)
.+.+..+-+..|++.-.+--|-||-..+.+.-...+.....+|+|+|||+|.+++....
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~ 149 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNF 149 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCC
Confidence 46677788888998876777777766555554444347788999999999999998743
No 104
>PRK13318 pantothenate kinase; Reviewed
Probab=95.96 E-value=0.15 Score=51.51 Aligned_cols=20 Identities=25% Similarity=0.586 Sum_probs=17.5
Q ss_pred EEEEecccccEEEEEEECCe
Q 005824 9 GIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~ 28 (675)
+++||+|.|+++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 58999999999999998554
No 105
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.87 E-value=0.024 Score=63.78 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=62.1
Q ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHH
Q 005824 302 TRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 302 tr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 381 (675)
++.++..+++.+++.+.-.++..++........++.|.++||+++++...+.+.+.+ +.+|....++ ++.++|||+.|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHHHH
Confidence 466666677777777665555555443211235789999999999999999999999 8999877554 57899999999
Q ss_pred HHHcC
Q 005824 382 AVLSG 386 (675)
Q Consensus 382 ~~l~~ 386 (675)
+.-.|
T Consensus 489 ~~~~G 493 (541)
T TIGR01315 489 AKAAG 493 (541)
T ss_pred HHhcC
Confidence 87655
No 106
>PRK15027 xylulokinase; Provisional
Probab=95.85 E-value=0.021 Score=63.45 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=56.8
Q ss_pred eHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHH
Q 005824 302 TRARFEEL-NMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQ 380 (675)
Q Consensus 302 tr~~~~~~-~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~ 380 (675)
++.+|... ++.+.-.+...+ +.+++.+ ..++.|+++||+++++...+.+.+.+ +.+|....+.+++.++|||+.
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~-~~l~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGM-DVVHACG---IKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcC---CCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHH
Confidence 55655433 333333333333 3344333 34689999999999999999999999 899966666777889999999
Q ss_pred HHHHcC
Q 005824 381 AAVLSG 386 (675)
Q Consensus 381 a~~l~~ 386 (675)
|+.-.|
T Consensus 432 A~~~~G 437 (484)
T PRK15027 432 AQIAAN 437 (484)
T ss_pred HHHhcC
Confidence 987665
No 107
>PLN02669 xylulokinase
Probab=95.84 E-value=0.026 Score=63.54 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHH
Q 005824 310 NMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
++.+++.+.=.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.++|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 3444444444444444433322 35789999999999999999999999 7888776555 6889999999975
No 108
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.78 E-value=0.0073 Score=43.52 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=32.6
Q ss_pred ccccccCCC-CCceeecCCC-CcccccccCCCCccee-e-CCeeeE
Q 005824 511 HCHACARPA-DGFVYHCEEK-GRNLHPCCFNLPRKLA-I-GSVEFV 552 (675)
Q Consensus 511 ~C~~C~~~~-~g~~Y~C~~C-~f~lH~~Ca~lp~~i~-~-~~h~~~ 552 (675)
.||.|.+.. .|..|+|..| +|+|...|........ | ..|++.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~ 47 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYR 47 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeE
Confidence 499999976 5599999999 7999999998875542 2 245543
No 109
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=95.76 E-value=0.005 Score=43.23 Aligned_cols=33 Identities=27% Similarity=0.862 Sum_probs=29.1
Q ss_pred CccCCcccCCCCCCcccccCC-CceecccccccC
Q 005824 443 LSECNGCKRPAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 443 ~~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
.+.|+.|+.++.|.+|+|..| ||+|...|....
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~ 37 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG 37 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence 456999999999999999999 999999997543
No 110
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=95.74 E-value=0.091 Score=52.64 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHH-HcCCceeEeeChh-HHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEE
Q 005824 144 KNAVVTVPAYFTDSQRQATKDAGA-MAGLNVLKIISEP-TAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIF 221 (675)
Q Consensus 144 ~~~vitvP~~~~~~~r~~l~~a~~-~Agl~~v~li~Ep-~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~ 221 (675)
....+|-|.--+++.|+.+.+..- ..+...+.+.-.. .|.|+.+....-.+..-+=+|+|-|.|-|-+-.+. .+ +
T Consensus 107 h~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipva--Eg-y 183 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVA--EG-Y 183 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEee--cc-e
Confidence 357899998888888888777543 2233322221111 12222222221112334558999999988765444 22 2
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH
Q 005824 222 KVKATAGDTHLGGEDFDNRMVNHFI 246 (675)
Q Consensus 222 ~~l~~~~~~~~GG~~id~~i~~~l~ 246 (675)
-+.+......+.|++++--+..++.
T Consensus 184 VigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 184 VIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred EEeeeeccccccCCchhHHHHHHhh
Confidence 2344456689999999877666663
No 111
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.62 E-value=0.006 Score=41.91 Aligned_cols=31 Identities=29% Similarity=0.829 Sum_probs=26.0
Q ss_pred ccCCcccCCCCCCcccccCC-CceecccccccC
Q 005824 444 SECNGCKRPAFGLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 444 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
+.|++|.. ..|.+|+|..| ||+|-..|...+
T Consensus 1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~~ 32 (41)
T cd02337 1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNTK 32 (41)
T ss_pred CcCCCCCC-cCCCceECCCCcchhhHHHHhCCC
Confidence 46999987 45799999999 999999997543
No 112
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=95.57 E-value=0.0088 Score=60.45 Aligned_cols=31 Identities=26% Similarity=0.817 Sum_probs=27.9
Q ss_pred CccCCcccC-CCCCCcccccCC-Cceecccccc
Q 005824 443 LSECNGCKR-PAFGLMYRCELC-NFNLHIPCMF 473 (675)
Q Consensus 443 ~~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~ 473 (675)
...||.|.. ++.|.+|+|.+| ||||.+.|-.
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~ 184 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEA 184 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhc
Confidence 356999999 799999999999 9999999953
No 113
>PRK03011 butyrate kinase; Provisional
Probab=95.39 E-value=1.5 Score=46.38 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=37.4
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC---CCcccccCCchhhHHhHHHHH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN---GKRLCQNINPDEAVAYGAAVQ 380 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~---~~~v~~~~~p~~ava~Gaa~~ 380 (675)
+++.|+|+||.+..+.+.+.|++.+. ...+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57999999999999999998888763 345556656678999998753
No 114
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=95.30 E-value=2.4 Score=43.52 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=33.0
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCC------CcccccCCchhhHHhHHHHHHH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNG------KRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~------~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
+++.|+|.|+.+..+.+.+.+++.+.. .++....-.+.+.+.||+..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 457899988877766666767766532 2333444456788999998763
No 115
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.29 E-value=0.21 Score=54.03 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=58.2
Q ss_pred eHHHHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHH
Q 005824 302 TRARFEELNMDLFRKCIK---HVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAA 378 (675)
Q Consensus 302 tr~~~~~~~~~~~~~i~~---~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa 378 (675)
+.+.+..+..-.++-+.- .|-+.+++.+ -.|+.|+.+||..+.|.+.+.+.+.. |.++..+ ..+++++.|+|
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsA 473 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAA 473 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHH
Confidence 345444555555544443 3333444433 56899999999999999999999999 7877776 67789999999
Q ss_pred HHHHHHcC
Q 005824 379 VQAAVLSG 386 (675)
Q Consensus 379 ~~a~~l~~ 386 (675)
+.++.-.+
T Consensus 474 m~~avAag 481 (544)
T COG1069 474 MFAAVAAG 481 (544)
T ss_pred HHHHHHhc
Confidence 99987555
No 116
>PRK13321 pantothenate kinase; Reviewed
Probab=95.19 E-value=0.36 Score=48.65 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=17.1
Q ss_pred EEEEecccccEEEEEEECC
Q 005824 9 GIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g 27 (675)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 5899999999999999865
No 117
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=95.17 E-value=0.012 Score=41.31 Aligned_cols=32 Identities=31% Similarity=0.718 Sum_probs=28.6
Q ss_pred cccccccCCCCCceeecCCC-CcccccccCCCC
Q 005824 510 KHCHACARPADGFVYHCEEK-GRNLHPCCFNLP 541 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lp 541 (675)
..|+.|+.+..|..|+|..| +|+|.+.|....
T Consensus 5 ~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~ 37 (44)
T smart00291 5 YSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG 37 (44)
T ss_pred cCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence 56999999999999999999 599999998654
No 118
>PRK04123 ribulokinase; Provisional
Probab=95.16 E-value=0.046 Score=61.81 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=43.9
Q ss_pred CccEEEEecCC-cChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGS-ARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|+++||+ |+++.+.+.+.+.+ +.+|... ++.++.+.|||+.|+.-.|
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 46889999999 99999999999999 7888665 4567889999999987555
No 119
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.13 E-value=0.052 Score=60.54 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=44.1
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.++|||+.|+.-.|
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcC
Confidence 4689999999999999999999999 79987664 456889999999987655
No 120
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.12 E-value=0.055 Score=60.47 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=44.2
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.| +.+|.... ..++.+.|||+.++.-.|
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 3689999999999999999999999 88887765 445789999999987665
No 121
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.12 E-value=0.016 Score=61.58 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCCCC--CCccEEEEecCCcChHHHHHHHHHhcC-------CCcccccCCchhhHHhHHHHHHHH
Q 005824 317 CIKHVDMCLRNGKMDK--SRVDDVVIVGGSARIPKVQQLLQEFFN-------GKRLCQNINPDEAVAYGAAVQAAV 383 (675)
Q Consensus 317 i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~l~~~l~~~~~-------~~~v~~~~~p~~ava~Gaa~~a~~ 383 (675)
|.+++...|.....+. ..+..|+|+||.|.+|++.++|+..+- ...|....||...+-+||+.+++.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 4455555555543222 238899999999999999999998873 457778889999999999999975
No 122
>PRK00976 hypothetical protein; Provisional
Probab=95.09 E-value=4.8 Score=41.48 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=38.0
Q ss_pred CccEEEEecCCcChH--HHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIP--KVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p--~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
+++.|+|-||-|+.+ .+.+.+++.+. .++ ..-...+.++|||+.+.-+.+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-ccc--cccCCchHHHHHHHHHHHHhC
Confidence 468999999999987 78899988883 332 223458999999999876643
No 123
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=95.07 E-value=0.024 Score=41.65 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=31.0
Q ss_pred eeEecCCCCcccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHH
Q 005824 550 EFVLSDKELSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEM 599 (675)
Q Consensus 550 ~~~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~ 599 (675)
.|....-..+..|+.|++... ......|+|..|++.+|.+|+..+
T Consensus 2 ~f~~~~~~~~~~C~~C~~~i~-----g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 2 HFVPTTFSKPTYCDVCGKFIW-----GLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp EEEEEESSSTEB-TTSSSBEC-----SSSSCEEEETTTT-EEETTGGCTS
T ss_pred eEEEccCCCCCCCcccCcccC-----CCCCCeEEECCCCChHhhhhhhhc
Confidence 333333234568999999862 124678999999999999999875
No 124
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=94.97 E-value=0.067 Score=59.49 Aligned_cols=51 Identities=31% Similarity=0.505 Sum_probs=44.7
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|+++||+++++.+.+.+.+.+ +.+|.... ..++.++|||+.++.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 78887764 566889999999987665
No 125
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=94.96 E-value=0.063 Score=60.45 Aligned_cols=51 Identities=29% Similarity=0.430 Sum_probs=44.4
Q ss_pred CccEEEEecCC-cChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGS-ARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|+++||+ ++++.+.+.+.+.| +.+|....++ ++.++|||+.|+.-.|
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 57899999999 99999999999999 7998776554 6789999999987665
No 126
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=94.93 E-value=0.012 Score=40.17 Aligned_cols=31 Identities=29% Similarity=0.627 Sum_probs=26.7
Q ss_pred ccccccC-CCCCceeecCCCC-cccccccCCCC
Q 005824 511 HCHACAR-PADGFVYHCEEKG-RNLHPCCFNLP 541 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~lp 541 (675)
.||.||. ++.|..|+|..|. |||...|-.-+
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 3999998 7899999999885 99998887654
No 127
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=94.90 E-value=4.4 Score=41.89 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=31.7
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC--------CCcccccCCchhhHHhHHHHHH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN--------GKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~--------~~~v~~~~~p~~ava~Gaa~~a 381 (675)
+++.|+|-||.+..+.+.+.|++.+. ..++....-.+.+.+.||+..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 45788887777766666666666552 1233444456678899999876
No 128
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=94.87 E-value=0.06 Score=59.97 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=44.0
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|..... .++.|+|||+.++.-.|
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~-~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKV-TETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEecCC-CcchHHHHHHHHHhhcC
Confidence 4689999999999999999999999 888877544 56789999999987655
No 129
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=94.80 E-value=0.07 Score=58.97 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=44.1
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|....++ ++.+.|||+.|+.-.|
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 4688999999999999999999999 7998776554 6779999999986555
No 130
>PRK10331 L-fuculokinase; Provisional
Probab=94.76 E-value=0.074 Score=58.86 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=44.0
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.++|||+.++.-.|
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 78887665 446889999999987555
No 131
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.69 E-value=0.077 Score=59.31 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=44.5
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|....++ ++.++|||+.|+.-.|
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhcC
Confidence 5789999999999999999999999 7888776544 5889999999987665
No 132
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=94.68 E-value=0.02 Score=57.44 Aligned_cols=34 Identities=29% Similarity=0.713 Sum_probs=28.1
Q ss_pred cCccCCcccCCCC-CCcccccCC-CceecccccccC
Q 005824 442 ILSECNGCKRPAF-GLMYRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 442 ~~~~C~~C~~~~~-g~~Y~C~~C-~f~lH~~Ca~~~ 475 (675)
....|+||...-+ +.+|+|-.| ||+|...|....
T Consensus 7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~ 42 (381)
T KOG1280|consen 7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENG 42 (381)
T ss_pred CCceeccccccceeeeeeEeeeecchhHHHHHhhcC
Confidence 4556999987754 677999999 999999997654
No 133
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=94.67 E-value=0.017 Score=41.80 Aligned_cols=37 Identities=24% Similarity=0.548 Sum_probs=30.2
Q ss_pred cccccCccCCcccCCCCC---CcccccCCCceeccccccc
Q 005824 438 KNHKILSECNGCKRPAFG---LMYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 438 ~~~~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~ 474 (675)
.+...+..|+.|.+.+++ ..|+|+.|.+..|..|+..
T Consensus 6 ~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 6 KSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred eeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 333457789999999886 5599999999999999753
No 134
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.57 E-value=0.027 Score=39.44 Aligned_cols=30 Identities=23% Similarity=0.697 Sum_probs=27.2
Q ss_pred ccccccC-CCCCceeecCCCC-cccccccCCC
Q 005824 511 HCHACAR-PADGFVYHCEEKG-RNLHPCCFNL 540 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~l 540 (675)
.||.|+. ++.|..|+|..|. |||...|...
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 3999996 7899999999997 9999999977
No 135
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=94.56 E-value=0.017 Score=41.46 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=29.7
Q ss_pred cccCccCCcccCCCCCC--cccccCCCceeccccccc
Q 005824 440 HKILSECNGCKRPAFGL--MYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 440 ~~~~~~C~~C~~~~~g~--~Y~C~~C~f~lH~~Ca~~ 474 (675)
...+..|+.|.+.+++. .|+|..|++..|..|+..
T Consensus 8 ~~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 8 FKKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred cCCCCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 35577899999998873 699999999999999753
No 136
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.51 E-value=0.12 Score=56.11 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCC-CCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcCC
Q 005824 312 DLFRKCIKHVDMCLRNGKMDK-SRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSGN 387 (675)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~-~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~~ 387 (675)
-.++.|.-.+++.|+....+. ..++.+.+.||.|+.+.+.+.+.+.+ |.+|..+.+.+. ++.|||+.++..+++
T Consensus 391 A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 444444444444444332222 56788999999999999999999999 799999888777 999999999988874
No 137
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.47 E-value=0.093 Score=57.79 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=43.2
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++...+.+.+.+ +++|... +.++.++|||+.++.-.|
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999 8888654 366889999999987555
No 138
>PLN02295 glycerol kinase
Probab=94.46 E-value=0.095 Score=58.67 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=44.0
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.++|||+.|+.-.|
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHHHHhhcC
Confidence 4788999999999999999999999 88887654 457889999999986655
No 139
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=94.45 E-value=1.1 Score=44.78 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.9
Q ss_pred EEEecccccEEEEEEECCe
Q 005824 10 IGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g~ 28 (675)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998765
No 140
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=94.34 E-value=0.026 Score=40.64 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=28.6
Q ss_pred cccccc-CCCCCceeecCCCC-cccccccCCCCcc
Q 005824 511 HCHACA-RPADGFVYHCEEKG-RNLHPCCFNLPRK 543 (675)
Q Consensus 511 ~C~~C~-~~~~g~~Y~C~~C~-f~lH~~Ca~lp~~ 543 (675)
.||.|+ .+..|..|+|..|. |+|...|...+..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~ 36 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVT 36 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCc
Confidence 399999 68899999999995 9999999987644
No 141
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.25 E-value=0.05 Score=55.85 Aligned_cols=69 Identities=22% Similarity=0.144 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCC-cccccCCchhhHHhHHHHH
Q 005824 308 ELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGK-RLCQNINPDEAVAYGAAVQ 380 (675)
Q Consensus 308 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~-~v~~~~~p~~ava~Gaa~~ 380 (675)
.+++-..+++.+.|++.....+..+.+ -.++.+||.+ |.+...|.+.+ +. .+..+..+.-+.|.|+++.
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~l-g~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEEL-GIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--ccccccccccc-cccccccccccccccccccccc
Confidence 444455556666666664443433322 2355556665 67888888888 55 4555556788999999864
No 142
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=94.12 E-value=0.023 Score=40.86 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=28.5
Q ss_pred ccccccC-CCCCceeecCCCC-cccccccCCCCc
Q 005824 511 HCHACAR-PADGFVYHCEEKG-RNLHPCCFNLPR 542 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~lp~ 542 (675)
.|+.|.+ ++.|..|+|..|. |||...|.....
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 3999999 8999999999996 999999988664
No 143
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.08 E-value=0.12 Score=58.01 Aligned_cols=51 Identities=27% Similarity=0.334 Sum_probs=44.3
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|+++||+++++...+.+.+.+ +.+|....++ ++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 4789999999999999999999999 8999877544 5779999999987655
No 144
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.06 E-value=0.035 Score=61.00 Aligned_cols=133 Identities=20% Similarity=0.299 Sum_probs=81.7
Q ss_pred cCccCCcccCCC---CCCcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccCC
Q 005824 442 ILSECNGCKRPA---FGLMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARP 518 (675)
Q Consensus 442 ~~~~C~~C~~~~---~g~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~ 518 (675)
..-.||.|..+- ...+-.|.-||.-+|..|+..-..+ .-||.=. .=.+-..|| |-.|-+.
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p--~gpWlCr-~Calg~~pp--------------CvLCPkk 332 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVP--EGPWLCR-TCALGIEPP--------------CVLCPKK 332 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecC--CCCeeeh-hccccCCCC--------------eeecccc
Confidence 455699999883 2345889999999999998764222 2333211 111112222 9999887
Q ss_pred CCCceeecCCCCcccccccCCCCcceeeCC----eeeEecCC-CCcc---cccccccccccCCCCCCCCeEEeec--CCC
Q 005824 519 ADGFVYHCEEKGRNLHPCCFNLPRKLAIGS----VEFVLSDK-ELSQ---ECIWCESKRLQGSASDNWGWSYVSK--CNN 588 (675)
Q Consensus 519 ~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~~~----h~~~l~~~-~~~~---~C~~C~~~~~~~~~~~~~~w~Y~c~--~c~ 588 (675)
+..+-|.=+ -.--.|..||.-=+.+.++. .|.+-... ..++ .|.+|+.+. |-.-+|. .|.
T Consensus 333 GGamK~~~s-gT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k~---------GACIqCs~k~C~ 402 (893)
T KOG0954|consen 333 GGAMKPTKS-GTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVKS---------GACIQCSNKTCR 402 (893)
T ss_pred CCcccccCC-CCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhcccC---------cceEEecccchh
Confidence 766666533 33568999997555555531 11111111 1122 599999874 5566775 499
Q ss_pred eeEeccchHHHHH
Q 005824 589 YHCHAFCSTEMLL 601 (675)
Q Consensus 589 ~~lH~~C~~~~~~ 601 (675)
-.+|+.||-+--.
T Consensus 403 t~fHv~CA~~aG~ 415 (893)
T KOG0954|consen 403 TAFHVTCAFEAGL 415 (893)
T ss_pred hhccchhhhhcCC
Confidence 9999999987533
No 145
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=94.03 E-value=0.66 Score=45.86 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=38.7
Q ss_pred CCCccEEEEecCCcChHHHHHHHHHhcC---CCcccccCCchhhHHhHHHHHH
Q 005824 332 KSRVDDVVIVGGSARIPKVQQLLQEFFN---GKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 332 ~~~i~~VvLvGG~s~~p~l~~~l~~~~~---~~~v~~~~~p~~ava~Gaa~~a 381 (675)
+.++|.|+|+||.++...+-+.|.+... ..-+.-..+-.+|.|.|+...-
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRVL 346 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRVL 346 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHHh
Confidence 4678999999999999999999998762 2344455577789999987543
No 146
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.94 E-value=0.2 Score=52.56 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=45.9
Q ss_pred cCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHH
Q 005824 327 NGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 327 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
..+.+......|+.+||.|+...|-+.|.+.| +.+|... +-..+.+.|+|++++
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~ 488 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAA 488 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHH
Confidence 34455556789999999999999999999999 7888776 777889999999875
No 147
>PTZ00288 glucokinase 1; Provisional
Probab=93.88 E-value=0.57 Score=50.20 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.2
Q ss_pred CCcEEEEecccccEEEEEEEC
Q 005824 6 GVLGIGIDLGTTYSCVGVWQH 26 (675)
Q Consensus 6 ~~~viGID~GTt~s~va~~~~ 26 (675)
.++++|+|+|-|++++++++.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 347999999999999999854
No 148
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=93.87 E-value=0.019 Score=40.76 Aligned_cols=31 Identities=32% Similarity=0.671 Sum_probs=24.3
Q ss_pred cccccccC-CCCCceeecCCCC-cccccccCCC
Q 005824 510 KHCHACAR-PADGFVYHCEEKG-RNLHPCCFNL 540 (675)
Q Consensus 510 ~~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~l 540 (675)
..||.|+. +..|..|+|..|. |||...|...
T Consensus 5 ~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 5 YTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp CE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred eECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 67999998 7789999999997 9999988754
No 149
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=93.81 E-value=0.15 Score=56.29 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=43.1
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|.++||+++++.+.+.+.+.+ +.+|.... .++.+.||++.++.-.|
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999 78886543 37889999999987665
No 150
>PRK12408 glucokinase; Provisional
Probab=93.63 E-value=3 Score=43.81 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=27.6
Q ss_pred HcCCceeEeeChhHHHHHHhcccc---------CCCCC-ceEEEEEeCCCc
Q 005824 168 MAGLNVLKIISEPTAAAIAYGLHR---------KASSE-KNVLIFDLGGGT 208 (675)
Q Consensus 168 ~Agl~~v~li~Ep~Aaa~~~~~~~---------~~~~~-~~vlvvDiGggT 208 (675)
..|++++.++++..|+|++-.... ..... ..++++-+|.|-
T Consensus 107 ~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGi 157 (336)
T PRK12408 107 QLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGL 157 (336)
T ss_pred HcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcc
Confidence 458878999999999999854331 11121 467888777653
No 151
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=93.46 E-value=1.2 Score=44.13 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHH
Q 005824 303 RARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLL 354 (675)
Q Consensus 303 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l 354 (675)
.+..+.+...++-.....|+..+++.......-..++++||.+++ +.+.+
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~--~~~~~ 230 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL--LLDEL 230 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh--hhhhc
Confidence 355666666666666666666665533221123589999998763 44444
No 152
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.41 E-value=0.18 Score=51.83 Aligned_cols=76 Identities=24% Similarity=0.352 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHH
Q 005824 161 ATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNR 240 (675)
Q Consensus 161 ~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~ 240 (675)
.+.+.-+..|++.-.+-.|-+|...+.+...........+|+|+|||+|.++.++-+. +....+.++|.-.+.+.
T Consensus 76 ~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~-----~~~~~Sl~lG~vrl~e~ 150 (285)
T PF02541_consen 76 FLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGK-----VVFSQSLPLGAVRLTER 150 (285)
T ss_dssp HHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTE-----EEEEEEES--HHHHHHH
T ss_pred HHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCe-----eeEeeeeehHHHHHHHH
Confidence 3444556679877555555555443333322222456789999999999999887433 22333468898887766
Q ss_pred H
Q 005824 241 M 241 (675)
Q Consensus 241 i 241 (675)
+
T Consensus 151 ~ 151 (285)
T PF02541_consen 151 F 151 (285)
T ss_dssp H
T ss_pred H
Confidence 5
No 153
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=93.37 E-value=0.038 Score=57.83 Aligned_cols=130 Identities=20% Similarity=0.272 Sum_probs=77.4
Q ss_pred cCCcccCCC---CCCcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccCCCCC
Q 005824 445 ECNGCKRPA---FGLMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPADG 521 (675)
Q Consensus 445 ~C~~C~~~~---~g~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~g 521 (675)
.|-.|...- .+.+-.|..|...+|+.|....... .-|... ...... .-+|++|.-.+.-
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~--si~s~~---------s~~ste-------pWfCeaC~~Gvs~ 182 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNV--SIPSGS---------SDCSTE-------PWFCEACLYGVSL 182 (707)
T ss_pred EEEEeecCccccccceeeccccCceeccccccccccc--ccCCCC---------ccCCCC-------chhhhhHhcCCCC
Confidence 587886552 4677999999999999997543111 111000 000011 1569999765542
Q ss_pred ceeecCCCC-----c-------ccccccCCCCcceee-CCee---eEec----CCCCcccccccccccccCCCCCCCCeE
Q 005824 522 FVYHCEEKG-----R-------NLHPCCFNLPRKLAI-GSVE---FVLS----DKELSQECIWCESKRLQGSASDNWGWS 581 (675)
Q Consensus 522 ~~Y~C~~C~-----f-------~lH~~Ca~lp~~i~~-~~h~---~~l~----~~~~~~~C~~C~~~~~~~~~~~~~~w~ 581 (675)
=||.-|. | -+|.-||..-.-+.. +-|. .+|. .+-+...|..|..+.-+ +.|-.
T Consensus 183 --P~CElCPn~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fA-----RtGvc 255 (707)
T KOG0957|consen 183 --PHCELCPNRFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFA-----RTGVC 255 (707)
T ss_pred --CccccCCCcCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhh-----hccee
Confidence 4777775 2 389999965433332 2222 1221 11133479999987632 24556
Q ss_pred EeecC--CCeeEeccchHHH
Q 005824 582 YVSKC--NNYHCHAFCSTEM 599 (675)
Q Consensus 582 Y~c~~--c~~~lH~~C~~~~ 599 (675)
-+|.- |.-|+|+.|+-.+
T Consensus 256 i~CdaGMCk~YfHVTCAQk~ 275 (707)
T KOG0957|consen 256 IRCDAGMCKEYFHVTCAQKL 275 (707)
T ss_pred eeccchhhhhhhhhhHHhhh
Confidence 67753 8999999999764
No 154
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.26 E-value=0.04 Score=38.99 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=28.8
Q ss_pred ccccccCCCCCceeecCCCC-cccccccCCCCcce
Q 005824 511 HCHACARPADGFVYHCEEKG-RNLHPCCFNLPRKL 544 (675)
Q Consensus 511 ~C~~C~~~~~g~~Y~C~~C~-f~lH~~Ca~lp~~i 544 (675)
.||.|.+...++.|+|..|. |||...|...-...
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~ 36 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKP 36 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhCCccC
Confidence 39999998899999999996 99999998665443
No 155
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.13 E-value=0.84 Score=48.01 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCccccc----CCchhhHHhHHHHHHH
Q 005824 312 DLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQN----INPDEAVAYGAAVQAA 382 (675)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~----~~p~~ava~Gaa~~a~ 382 (675)
.+.+=+...|.+.+.... ...+.|+++||+++.|.|.++|++.++ .+|... .+++.-=|+.-|++|.
T Consensus 267 Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 267 TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHH
Confidence 333334444555554332 224689999999999999999999996 444432 2455555555666664
No 156
>PLN02666 5-oxoprolinase
Probab=92.86 E-value=1.7 Score=53.41 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=52.5
Q ss_pred EeHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCc-ccccCCchhhHHhHHH
Q 005824 301 ITRARFEELNMDLFR-KCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKR-LCQNINPDEAVAYGAA 378 (675)
Q Consensus 301 itr~~~~~~~~~~~~-~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~-v~~~~~p~~ava~Gaa 378 (675)
++-++..+-+..+++ .+.+.|+......+.++.+ -.++-.||++ |...-.|.+.+ +.+ |+.+.+|.-..|.|++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~l-gi~~vivP~~~gv~sA~G~~ 529 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARAL-GMSEVFVHRYCGILSAYGMG 529 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHc-CCCEEEeCCCccHHHHHHHH
Confidence 455666555555444 3455666666665655544 2444455554 78899999999 565 8888899999999998
Q ss_pred HHHHH
Q 005824 379 VQAAV 383 (675)
Q Consensus 379 ~~a~~ 383 (675)
+.-..
T Consensus 530 ~ad~~ 534 (1275)
T PLN02666 530 LADVV 534 (1275)
T ss_pred hhhhh
Confidence 75543
No 157
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.85 E-value=0.5 Score=52.74 Aligned_cols=52 Identities=31% Similarity=0.357 Sum_probs=40.3
Q ss_pred CCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHc
Q 005824 333 SRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLS 385 (675)
Q Consensus 333 ~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 385 (675)
..++.|.++||+++++...+.+.+.+ +.+|..+...+.+.+-||++.+....
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAAALG 451 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHHHhC
Confidence 44678999999999999999999999 89988765555555666665555443
No 158
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=92.76 E-value=0.055 Score=38.78 Aligned_cols=32 Identities=34% Similarity=0.751 Sum_probs=27.6
Q ss_pred ccccccC-CCCCceeecCCCC-cccccccCCCCc
Q 005824 511 HCHACAR-PADGFVYHCEEKG-RNLHPCCFNLPR 542 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~lp~ 542 (675)
.||.|++ ++.|+.|+|..|. |||...|...-.
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~ 35 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGR 35 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhCCC
Confidence 3999997 6899999999996 999999986553
No 159
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=92.47 E-value=0.067 Score=36.78 Aligned_cols=30 Identities=23% Similarity=0.565 Sum_probs=25.3
Q ss_pred ccccccCCCCCceeecCCC-CcccccccCCCC
Q 005824 511 HCHACARPADGFVYHCEEK-GRNLHPCCFNLP 541 (675)
Q Consensus 511 ~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~lp 541 (675)
.||.|.. ..|..|+|..| +|||-..|...+
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~~ 32 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNTK 32 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCCC
Confidence 4999988 44699999999 599999998764
No 160
>PRK09698 D-allose kinase; Provisional
Probab=92.36 E-value=7.4 Score=40.15 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=31.4
Q ss_pred CccEEEEecCCcCh-----HHHHHHHHHhcC------CCcccccCCchhhHHhHHHHHHH
Q 005824 334 RVDDVVIVGGSARI-----PKVQQLLQEFFN------GKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 334 ~i~~VvLvGG~s~~-----p~l~~~l~~~~~------~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
+++.|+|-||.+.. +.|++.+++... ..++......+.+.+.||++.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 45788888876653 345556655431 12345555567788999998864
No 161
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=92.27 E-value=0.069 Score=53.68 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=40.5
Q ss_pred cccccccCCC-CCceeecCCCC-cccccccCCCCcceee--CCee---------eEecC--------CCCcccccccccc
Q 005824 510 KHCHACARPA-DGFVYHCEEKG-RNLHPCCFNLPRKLAI--GSVE---------FVLSD--------KELSQECIWCESK 568 (675)
Q Consensus 510 ~~C~~C~~~~-~g~~Y~C~~C~-f~lH~~Ca~lp~~i~~--~~h~---------~~l~~--------~~~~~~C~~C~~~ 568 (675)
..||+||+.. .+..|+|..|- |||...|-.--....+ ..|+ |.|.. ...++.|..|++.
T Consensus 9 v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~f~Ge~i~~y~~qSftCPyC~~~ 88 (381)
T KOG1280|consen 9 VSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELYFGGEPISHYDPQSFTCPYCGIM 88 (381)
T ss_pred ceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeEecCccccccccccccCCccccc
Confidence 5599999964 77799999995 9999999865543332 3444 22211 1235788888875
Q ss_pred c
Q 005824 569 R 569 (675)
Q Consensus 569 ~ 569 (675)
+
T Consensus 89 G 89 (381)
T KOG1280|consen 89 G 89 (381)
T ss_pred c
Confidence 4
No 162
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.23 E-value=0.95 Score=44.14 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeEeeChhHHHHHHhcccc--CCCCCceEEEEEe
Q 005824 128 LAKMREIAKAYLGSNVKNAVVTVPAYFTDS-QRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHR--KASSEKNVLIFDL 204 (675)
Q Consensus 128 L~~l~~~a~~~~~~~~~~~vitvP~~~~~~-~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~--~~~~~~~vlvvDi 204 (675)
.+++.+..+..++.++ .++++-..|... .....++. |||.+...-+ .....+..++||+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEec
Confidence 4556666676666553 778888777653 33323332 2222211110 0114567899999
Q ss_pred CCCcEEEEEEEE
Q 005824 205 GGGTFDVSLLTI 216 (675)
Q Consensus 205 GggT~dvsv~~~ 216 (675)
|+.|+|+-=+..
T Consensus 138 GSTTtDIIPi~~ 149 (330)
T COG1548 138 GSTTTDIIPIKD 149 (330)
T ss_pred CCcccceEeecc
Confidence 999999976653
No 163
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=91.90 E-value=0.062 Score=38.75 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=28.5
Q ss_pred cccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHH
Q 005824 559 SQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEM 599 (675)
Q Consensus 559 ~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~ 599 (675)
...|..|++... ......|+|..|++..|.+|...+
T Consensus 11 ~~~C~~C~~~i~-----~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 11 PTFCDVCRKSIW-----GLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCChhhcchhhh-----ccccceeEcCCCCCchhhhhhccC
Confidence 457999999762 112478999999999999998765
No 164
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.16 E-value=1.1 Score=46.16 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCC---cccccCCc----hhhHHhHHHHHH
Q 005824 309 LNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGK---RLCQNINP----DEAVAYGAAVQA 381 (675)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~---~v~~~~~p----~~ava~Gaa~~a 381 (675)
.++..++.+.+.|...+... .+++.|+|+|-.++++-+.+.+++.|.+. ++.. ..+ -...|+|+|+.|
T Consensus 239 a~ea~~E~i~k~V~~l~~~~----~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~-l~~~~~~aKeaA~GaAiIA 313 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLASV----PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRK-LEGLARKAKEAAQGAAIIA 313 (343)
T ss_pred HHHHHHHHHHHHHHHHhccc----CCCCEEEEeccccccHHHHHHHHHHHHhhcccceee-cccccccchhhhhhHHHHh
Confidence 34445555555655554442 45678999999999999988888877322 2221 122 245899999999
Q ss_pred HHHcC
Q 005824 382 AVLSG 386 (675)
Q Consensus 382 ~~l~~ 386 (675)
.-+.|
T Consensus 314 ~glaG 318 (343)
T PF07318_consen 314 NGLAG 318 (343)
T ss_pred hhhhc
Confidence 77766
No 165
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=90.91 E-value=0.14 Score=56.08 Aligned_cols=125 Identities=17% Similarity=0.374 Sum_probs=74.6
Q ss_pred cCCccc-CCCCC--Cccccc--CCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccCCC
Q 005824 445 ECNGCK-RPAFG--LMYRCE--LCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPA 519 (675)
Q Consensus 445 ~C~~C~-~~~~g--~~Y~C~--~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 519 (675)
-|-.|. |.||- +.-.|+ .|..-+|..|+..-..+ .-| -+|.-|...-
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVP--tGp--------------------------WfCrKCesqe 58 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVP--TGP--------------------------WFCRKCESQE 58 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEecC--CCc--------------------------hhhhhhhhhh
Confidence 477774 44764 445685 59999999997543111 122 3466676655
Q ss_pred CCceeecCCCCcc------------cccccCCCCcceeeC-Ce---eeEec--CC-CCcccccccccccccCCCCCCCCe
Q 005824 520 DGFVYHCEEKGRN------------LHPCCFNLPRKLAIG-SV---EFVLS--DK-ELSQECIWCESKRLQGSASDNWGW 580 (675)
Q Consensus 520 ~g~~Y~C~~C~f~------------lH~~Ca~lp~~i~~~-~h---~~~l~--~~-~~~~~C~~C~~~~~~~~~~~~~~w 580 (675)
+-...+|+-|.++ .|+.||..-.++... -| |..|. +- .....|.+|.+.+-.- .-..+-
T Consensus 59 raarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~Grpn--kA~~GA 136 (900)
T KOG0956|consen 59 RAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPN--KAAKGA 136 (900)
T ss_pred hhccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCcc--cccccc
Confidence 5556778877764 899999764444332 12 12221 11 1234799998764111 112455
Q ss_pred EEeec--CCCeeEeccchHHH
Q 005824 581 SYVSK--CNNYHCHAFCSTEM 599 (675)
Q Consensus 581 ~Y~c~--~c~~~lH~~C~~~~ 599 (675)
.-.|. .|.-.+|+.|+-..
T Consensus 137 CMtCNKs~CkqaFHVTCAQ~~ 157 (900)
T KOG0956|consen 137 CMTCNKSGCKQAFHVTCAQRA 157 (900)
T ss_pred ceecccccchhhhhhhHhhhh
Confidence 66774 49999999999764
No 166
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=90.86 E-value=1.6 Score=45.09 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.3
Q ss_pred ceEEEEEeCCCcEEEEEEEEe
Q 005824 197 KNVLIFDLGGGTFDVSLLTIG 217 (675)
Q Consensus 197 ~~vlvvDiGggT~dvsv~~~~ 217 (675)
..++++||||+|||++++.-+
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCEEEEEcCccceeeEEecCC
Confidence 458999999999999998744
No 167
>PRK00292 glk glucokinase; Provisional
Probab=90.67 E-value=23 Score=36.75 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=29.3
Q ss_pred HHcCCceeEeeChhHHHHHHhccc---------cCCC-CCceEEEEEeCCCcE
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLH---------RKAS-SEKNVLIFDLGGGTF 209 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~---------~~~~-~~~~vlvvDiGggT~ 209 (675)
+..|++++.+.++..|+|++-... .... ....++++-+|.|-=
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG 140 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLG 140 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcce
Confidence 345887899999999999985431 1111 136788888887643
No 168
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=90.57 E-value=0.088 Score=37.66 Aligned_cols=37 Identities=14% Similarity=0.362 Sum_probs=27.9
Q ss_pred CcccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHHH
Q 005824 558 LSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEML 600 (675)
Q Consensus 558 ~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~~ 600 (675)
....|..|++.... .. -.|.|..|++..|.+|+..+.
T Consensus 10 ~~~~C~~C~~~i~~-----~~-~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 10 KPTKCCVCRKSIWG-----SF-QGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCccccccccCc-----CC-CCcCCCCCCchHHHHHHhhcC
Confidence 34579999997521 01 268999999999999998763
No 169
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=90.26 E-value=0.84 Score=48.10 Aligned_cols=73 Identities=26% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCccccc----CCchhhHHhHHHHHHHH
Q 005824 308 ELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQN----INPDEAVAYGAAVQAAV 383 (675)
Q Consensus 308 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~----~~p~~ava~Gaa~~a~~ 383 (675)
+++..+.+=+.+.|.+.++... ..++.|+++||+++.+.|.++|++.+++.+|... .+|+.-=|.+-|++|..
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~ 337 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYR 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHH
Confidence 3444444444555555555432 2368999999999999999999999987666433 24454445555566653
No 170
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=2.7 Score=43.62 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=41.2
Q ss_pred CCCccEEEEecCCcChHHHHHHHHHhcCCCccccc----CCchhhHHhHHHHHHHHH
Q 005824 332 KSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQN----INPDEAVAYGAAVQAAVL 384 (675)
Q Consensus 332 ~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~----~~p~~ava~Gaa~~a~~l 384 (675)
..+.+.++++||+.+.|.+.+.|...+++.+|... .+++.-=|.+-++++...
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 35678999999999999999999999987666533 366666677777777543
No 171
>PRK14878 UGMP family protein; Provisional
Probab=89.97 E-value=12 Score=39.16 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.9
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC--CCcccccC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNI 367 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~ 367 (675)
.++.|+|+||-+...+|++.+.+.+. +.++..+.
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 276 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVP 276 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 35689999999999999999998762 44555543
No 172
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=89.76 E-value=0.19 Score=35.27 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=25.8
Q ss_pred ccccccCCCCCceeecCCCC-cccccccCC
Q 005824 511 HCHACARPADGFVYHCEEKG-RNLHPCCFN 539 (675)
Q Consensus 511 ~C~~C~~~~~g~~Y~C~~C~-f~lH~~Ca~ 539 (675)
.|+.||.+.....|||..+. ++|.+.|..
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHh
Confidence 49999999999999999776 999999974
No 173
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=89.18 E-value=43 Score=37.69 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=39.5
Q ss_pred CccEEEEecCCcChHHHHHHHHHhc--CCCcccccCC---chhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFF--NGKRLCQNIN---PDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~--~~~~v~~~~~---p~~ava~Gaa~~a~~l~~ 386 (675)
.++.|+|+||-+...++++.|.+.+ .+.++..+.. -|.+++.|++.+.....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 3568999999999999999999665 2456655542 367889988876655544
No 174
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.75 E-value=25 Score=34.43 Aligned_cols=68 Identities=21% Similarity=0.151 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHH---HHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHc
Q 005824 315 RKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPK---VQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLS 385 (675)
Q Consensus 315 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~---l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 385 (675)
+.+.-.+.-.+........+.+.|+|.|.-+.... ++..|+.... .++ .. -|-++.++|.|+.|.-..
T Consensus 249 dtlal~vamEIagL~~~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~-~k~-~~-l~~esaaiG~a~IA~DI~ 319 (332)
T COG4020 249 DTLALLVAMEIAGLLMVVYGCDGVVLAGSVGGDREPMDVLKRIKSKVF-NKV-AV-LPPESAAIGLALIARDIA 319 (332)
T ss_pred HHHHHHHHHHHhhhhceecCCceEEEecccccccchhhHHHHHHHHHH-HHH-hh-cCchhhhhhhHHHHHHHH
Confidence 33444433333333323456788999997777666 6666666552 222 22 355568999999887443
No 175
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.73 E-value=0.11 Score=45.56 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=17.4
Q ss_pred EEEEecccccEEEEEEECCeE
Q 005824 9 GIGIDLGTTYSCVGVWQHNRV 29 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~ 29 (675)
+++||+|++.+.+++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999987653
No 176
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=88.19 E-value=18 Score=41.76 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.2
Q ss_pred HHHHcCCceeEeeChhHHHHHH
Q 005824 165 AGAMAGLNVLKIISEPTAAAIA 186 (675)
Q Consensus 165 a~~~Agl~~v~li~Ep~Aaa~~ 186 (675)
..+..|++++.++++-.|+|++
T Consensus 101 l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 101 TRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHcCCCeEEEEchHHHHHcC
Confidence 3344588889999999999998
No 177
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=87.71 E-value=0.2 Score=55.40 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=58.9
Q ss_pred cccccccCCCCCceeecCCCCcccccccCCCCcce------------ee-CCeeeEecCC--CCcccccccccccccCCC
Q 005824 510 KHCHACARPADGFVYHCEEKGRNLHPCCFNLPRKL------------AI-GSVEFVLSDK--ELSQECIWCESKRLQGSA 574 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~lp~~i------------~~-~~h~~~l~~~--~~~~~C~~C~~~~~~~~~ 574 (675)
..|..|.+.-.-..-+|..|+..+|..|...-.+. .+ ..|.++...+ ..+..|..|.+....-..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~ 124 (634)
T KOG1169|consen 45 MVCCVCLWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSCGSCGV 124 (634)
T ss_pred hhhhhhhhcccccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccccchhh
Confidence 36999998555557789999999999998754221 11 1233333333 234578888875411100
Q ss_pred CCCCCeEEeecCCCeeEeccchHHHHHH
Q 005824 575 SDNWGWSYVSKCNNYHCHAFCSTEMLLE 602 (675)
Q Consensus 575 ~~~~~w~Y~c~~c~~~lH~~C~~~~~~~ 602 (675)
. ..--++|.+|++.+|..|...+.-+
T Consensus 125 ~--~~~g~~C~~C~~~vh~~C~~~~~~~ 150 (634)
T KOG1169|consen 125 G--IKQGLCCDWCGRTVHERCVRRADPE 150 (634)
T ss_pred c--ccCceeeccccchHHHHHHhhcCcc
Confidence 0 1123789999999999999998776
No 178
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=87.03 E-value=20 Score=37.07 Aligned_cols=45 Identities=16% Similarity=0.380 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcC--CCccccc
Q 005824 317 CIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQN 366 (675)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~ 366 (675)
+.+.+++.++. ..++.|+|+||-+...++++.|.+.+. +.++..+
T Consensus 246 l~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~ 292 (305)
T TIGR00329 246 LIEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLCQELNVEFYYP 292 (305)
T ss_pred HHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECC
Confidence 34445555544 246789999999999999999998873 3344444
No 179
>PRK09604 UGMP family protein; Validated
Probab=85.76 E-value=49 Score=34.64 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=39.8
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC--CCcccccCC---chhhHHhHHHHHHHHHcC
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNIN---PDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~~---p~~ava~Gaa~~a~~l~~ 386 (675)
+++.|+|+||-+...++.+.|.+.+. +.++..+.. -|.++++|++=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 46789999999999999999998873 345555443 367888888866555555
No 180
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=85.64 E-value=49 Score=34.48 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=31.6
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC--CCcccccCC---chhhHHhH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNIN---PDEAVAYG 376 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~~---p~~ava~G 376 (675)
.++.|+|+||-+...++.+.|.+.+. +.++..+.. -|.++++|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 35689999999999999999999652 455554432 25567777
No 181
>PLN02920 pantothenate kinase 1
Probab=85.44 E-value=17 Score=38.39 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=38.1
Q ss_pred CCccEEEEecCCcChH-HHHHHHHH---hc--CCCcccccCCchhhHHhHHHHHHH
Q 005824 333 SRVDDVVIVGGSARIP-KVQQLLQE---FF--NGKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 333 ~~i~~VvLvGG~s~~p-~l~~~l~~---~~--~~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
..++.|+++|.+.+.+ ...+.|.- .+ .+.+.....+....-|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 5688999999999998 66664433 33 356777888899999999987653
No 182
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.04 E-value=0.19 Score=55.61 Aligned_cols=101 Identities=18% Similarity=0.278 Sum_probs=57.6
Q ss_pred ccccCccCCcccCCCCC--Cc-ccccCCCceecccccccCC--cCcccc-CCCCCcceE-ECCCCCCCCCCccccccccc
Q 005824 439 NHKILSECNGCKRPAFG--LM-YRCELCNFNLHIPCMFIDR--KPAAKH-EFFGNSTFK-SLPKLPGICSTRDCRDCNKH 511 (675)
Q Consensus 439 ~~~~~~~C~~C~~~~~g--~~-Y~C~~C~f~lH~~Ca~~~~--~~~~~h-~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 511 (675)
.-..+..|..|.+.++| .. |+|..|.++.|+.|...-- ...... ..-+.-.+. +-..-|.... ........+
T Consensus 165 ~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~~~~~~Phrf~-~~~~q~ptF 243 (694)
T KOG0694|consen 165 SLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFEFTFRNPHRFV-KLNRQRPTF 243 (694)
T ss_pred eccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccccccccccCCCcch-hhhccCccH
Confidence 34457779999999887 43 9999999999999964410 000011 111100000 1011110000 000001266
Q ss_pred cccccCCCCC---ceeecCCCCcccccccCCC
Q 005824 512 CHACARPADG---FVYHCEEKGRNLHPCCFNL 540 (675)
Q Consensus 512 C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~l 540 (675)
|+-||....+ -..+|+.|+-..|-.|..+
T Consensus 244 c~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~ 275 (694)
T KOG0694|consen 244 CDHCGSVLYRLRQQGLKCSTCGRNVHNRCVEN 275 (694)
T ss_pred HHhcchhhhhhcccCeeehhhhccccHHHHHh
Confidence 9999986533 3578999999999999864
No 183
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=84.82 E-value=0.49 Score=47.33 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=23.8
Q ss_pred cccccc-cCCCCCceeecCCCCcccccccCCC
Q 005824 510 KHCHAC-ARPADGFVYHCEEKGRNLHPCCFNL 540 (675)
Q Consensus 510 ~~C~~C-~~~~~g~~Y~C~~C~f~lH~~Ca~l 540 (675)
+.|-+| ++...+-.|+|..|.-.+..+|-.+
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVF 362 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHH
Confidence 569999 4445777999999988777777543
No 184
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=84.56 E-value=3 Score=44.77 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=55.9
Q ss_pred EeHHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHH
Q 005824 301 ITRARFEE-LNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAV 379 (675)
Q Consensus 301 itr~~~~~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~ 379 (675)
.+++++.. .++.+.-++.+.++.+-++.+. +++.+-+=||.+++.++.+...+.+ +.+|..+. -.+..|.|||+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALGAAY 445 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHHHHH
Confidence 34555432 2333333333444433344432 5778888999999999999999999 79988874 46789999999
Q ss_pred HHHHHcC
Q 005824 380 QAAVLSG 386 (675)
Q Consensus 380 ~a~~l~~ 386 (675)
.|..-.|
T Consensus 446 lAGla~G 452 (499)
T COG0554 446 LAGLAVG 452 (499)
T ss_pred HHhhhhC
Confidence 9987655
No 185
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=84.41 E-value=0.72 Score=50.71 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=62.5
Q ss_pred ccccCccCCcccCCCCCCcccccCCCce------------eccccccc-CCcCcc-ccCCCCCcceEECCCCCCCCCCcc
Q 005824 439 NHKILSECNGCKRPAFGLMYRCELCNFN------------LHIPCMFI-DRKPAA-KHEFFGNSTFKSLPKLPGICSTRD 504 (675)
Q Consensus 439 ~~~~~~~C~~C~~~~~g~~Y~C~~C~f~------------lH~~Ca~~-~~~~~~-~h~~~~~~~l~~~~~~~~~~~~~~ 504 (675)
-...+.+|.-|.....-.+.+|+.|-|. -|..||.+ |+.+.. .|-+- |..|-.-|...+
T Consensus 44 VPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TME---PIiLq~VP~dRf---- 116 (900)
T KOG0956|consen 44 VPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTME---PIILQDVPHDRF---- 116 (900)
T ss_pred cCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeeccccccc---ceeeccCchhhh----
Confidence 3456889999988777788999999665 79999986 322221 12222 233322222222
Q ss_pred ccccccccccccCCC------CCceeecC--CCCcccccccCCCCcceee
Q 005824 505 CRDCNKHCHACARPA------DGFVYHCE--EKGRNLHPCCFNLPRKLAI 546 (675)
Q Consensus 505 ~~~~~~~C~~C~~~~------~g~~Y~C~--~C~f~lH~~Ca~lp~~i~~ 546 (675)
.+.|-.|.+.+ .|-...|. .|.-.+|+-||..-.-+.-
T Consensus 117 ----nKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCE 162 (900)
T KOG0956|consen 117 ----NKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCE 162 (900)
T ss_pred ----cceeeeecccCCccccccccceecccccchhhhhhhHhhhhcccee
Confidence 26688886643 56667775 5788999999977655443
No 186
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=84.39 E-value=0.42 Score=48.41 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=28.2
Q ss_pred ccccccC-CCCCceeecCCCC-cccccccCCCC
Q 005824 511 HCHACAR-PADGFVYHCEEKG-RNLHPCCFNLP 541 (675)
Q Consensus 511 ~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~lp 541 (675)
.||.|++ ++-|..|+|..|. |||.-.|-.-.
T Consensus 154 ~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 154 PCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 3999999 8899999999996 99999998765
No 187
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=84.39 E-value=51 Score=33.60 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcCh-HHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 312 DLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARI-PKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~-p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.++++....|...++.... ......+.|.||..+. +++.+...+.+. . +|+..+..||.+.|.....
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~-~------~~~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALL-V------PPIGDALSGAVLLALGRFG 294 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhc-C------CccccHHHHHHHHHHHhhh
Confidence 3445555555555554321 2345689999998877 888888877762 2 2356688899988865443
No 188
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=84.31 E-value=11 Score=37.42 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=58.7
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEe
Q 005824 140 GSNVKNAVV--TVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIG 217 (675)
Q Consensus 140 ~~~~~~~vi--tvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~ 217 (675)
+..+..++. .+|.+|+. -+.+++.+...|.+. .+++--.||.++...+........++++|+|=|.|-.++++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~-- 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK-- 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe--
Confidence 345557777 67776443 245556666666655 56677777777777666555678899999999999888774
Q ss_pred CCEEEEEEEcCCCCCcHHHHH
Q 005824 218 KGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 218 ~~~~~~l~~~~~~~~GG~~id 238 (675)
++.+.=+-..-+..+-...+.
T Consensus 186 ~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 186 DGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred CCEEEEEEecccCCCCHHHHH
Confidence 333332333333344444433
No 189
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=84.10 E-value=1.1 Score=38.41 Aligned_cols=76 Identities=13% Similarity=0.307 Sum_probs=49.0
Q ss_pred cccccCCCCCceeecCCCCcccccccCCCCcceee-CCeee------EecCCCCcccccccccccccCCCCCCCCeEEee
Q 005824 512 CHACARPADGFVYHCEEKGRNLHPCCFNLPRKLAI-GSVEF------VLSDKELSQECIWCESKRLQGSASDNWGWSYVS 584 (675)
Q Consensus 512 C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~-~~h~~------~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~Y~c 584 (675)
|-.|++... .++-...+--+|..||..-..+.. +.... .+.+.....+|.+|++.. |-.=.|
T Consensus 3 C~lC~~~~G--alk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~---------G~~i~C 71 (110)
T PF13832_consen 3 CVLCPKRGG--ALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKSG---------GACIKC 71 (110)
T ss_pred cEeCCCCCC--cccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCCC---------ceeEEc
Confidence 888887543 345555678899999986433332 22221 111212346899999963 445577
Q ss_pred cC--CCeeEeccchHH
Q 005824 585 KC--NNYHCHAFCSTE 598 (675)
Q Consensus 585 ~~--c~~~lH~~C~~~ 598 (675)
.. |..++|+.|+..
T Consensus 72 ~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 72 SHPGCSTAFHPTCARK 87 (110)
T ss_pred CCCCCCcCCCHHHHHH
Confidence 66 999999999865
No 190
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=83.75 E-value=0.95 Score=50.22 Aligned_cols=153 Identities=14% Similarity=0.156 Sum_probs=79.5
Q ss_pred cCCcccCCCCCCcccccCCCceecccccccCCc--C-----ccccCCCCCcceEECCCCCCCCCCccccccccccccccC
Q 005824 445 ECNGCKRPAFGLMYRCELCNFNLHIPCMFIDRK--P-----AAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACAR 517 (675)
Q Consensus 445 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~~~~--~-----~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~ 517 (675)
.|.-|....--+.-.|+.|...+|..|...-.+ + -..|-.|..-..+. .++......-.|-.|...|..|+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~c~~c~~~c~~~~~ 124 (634)
T KOG1169|consen 46 VCCVCLWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHV-WRPKHLWKPAYCFVCPKSCGSCGV 124 (634)
T ss_pred hhhhhhhcccccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCcee-ccCCCCCCCceEEeccccccchhh
Confidence 677777644445689999999999999543211 0 01111121101111 111111122222222333444443
Q ss_pred CCCCceeecCCCCcccccccCCCCcce--ee-C--------CeeeEecCCCCcccccccccccccCCCCCCCCeEEeecC
Q 005824 518 PADGFVYHCEEKGRNLHPCCFNLPRKL--AI-G--------SVEFVLSDKELSQECIWCESKRLQGSASDNWGWSYVSKC 586 (675)
Q Consensus 518 ~~~g~~Y~C~~C~f~lH~~Ca~lp~~i--~~-~--------~h~~~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~ 586 (675)
.. .--|+|.-|++.+|..|..-+.+= .. + -++...........|..|.+...... ..--++|.+
T Consensus 125 ~~-~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~c~~ 199 (634)
T KOG1169|consen 125 GI-KQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKSVKADQ----GLTGPRCGW 199 (634)
T ss_pred cc-cCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhhhccccccc----cccccccce
Confidence 32 224889999999999998765221 11 0 01111111122456777776532111 122579999
Q ss_pred CCeeEeccchHHHHHHh
Q 005824 587 NNYHCHAFCSTEMLLEN 603 (675)
Q Consensus 587 c~~~lH~~C~~~~~~~~ 603 (675)
|...+|..|..++..+-
T Consensus 200 ~~~~~h~~~~~~~~~~~ 216 (634)
T KOG1169|consen 200 CQIRVHDKCKSELSQEC 216 (634)
T ss_pred eeeeeecchHHHHhhhc
Confidence 99999999998764443
No 191
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=83.49 E-value=43 Score=34.76 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=43.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcC--CCcccccCC---chhhHHhHH
Q 005824 304 ARFEELNMDLF-RKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNIN---PDEAVAYGA 377 (675)
Q Consensus 304 ~~~~~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~~---p~~ava~Ga 377 (675)
.++...++..+ +-+.+.++..++. ..++.|+|+||-+...++.+.|.+.+. +.++..+.. -|.++++|+
T Consensus 233 ~~iA~~~q~~l~~~l~~~~~~~~~~-----~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ 307 (314)
T TIGR03723 233 ADIAASFQAAVVDVLVEKTKRALKK-----TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAA 307 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHH
Confidence 34443343333 2233444444443 346789999999999999999998873 335544433 256777776
Q ss_pred H
Q 005824 378 A 378 (675)
Q Consensus 378 a 378 (675)
+
T Consensus 308 a 308 (314)
T TIGR03723 308 A 308 (314)
T ss_pred H
Confidence 5
No 192
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=82.31 E-value=7.8 Score=39.23 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=38.9
Q ss_pred ccEEEEecC--CcChH-HHHHHHHHhcCCCcccccCCchhhHHhHHHHHHHHHcC
Q 005824 335 VDDVVIVGG--SARIP-KVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 335 i~~VvLvGG--~s~~p-~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 386 (675)
.+.|+|+|- .++.| .+++.|++.+ +.++..- +. ...|.|+|+.|.-+.+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L-~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVL-DS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEe-cc-hhhhhhHHHHHHHHhC
Confidence 348999987 88999 9999999999 4555543 22 7899999999976654
No 193
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.05 E-value=2.6 Score=35.87 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=22.3
Q ss_pred cccccccCCCC------------CceeecCCCCcccccccCCC
Q 005824 510 KHCHACARPAD------------GFVYHCEEKGRNLHPCCFNL 540 (675)
Q Consensus 510 ~~C~~C~~~~~------------g~~Y~C~~C~f~lH~~Ca~l 540 (675)
..|-+|..+.. .-.|.|..|.-++..+|-..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 98 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF 98 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence 56999988532 34799999887777777543
No 195
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=81.69 E-value=13 Score=38.56 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=26.0
Q ss_pred ceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCC
Q 005824 172 NVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGG 207 (675)
Q Consensus 172 ~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGgg 207 (675)
-++.+-++..|+|++-.+.........++.+-+|-|
T Consensus 108 ~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 108 LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 467899999999998765544334567777777765
No 196
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.66 E-value=0.35 Score=50.34 Aligned_cols=43 Identities=23% Similarity=0.680 Sum_probs=37.3
Q ss_pred cccceecccccCccCCcccCCCCCCc---ccccCCCceeccccccc
Q 005824 432 AHDLQLKNHKILSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 474 (675)
Q Consensus 432 ~H~l~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 474 (675)
+|..+..++..|..||.|+..++|.. -+|+.||.++|..|...
T Consensus 110 kHkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~n 155 (683)
T KOG0696|consen 110 KHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVEN 155 (683)
T ss_pred ccceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhc
Confidence 68888888889999999999877743 89999999999999654
No 197
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=81.13 E-value=0.92 Score=47.85 Aligned_cols=127 Identities=20% Similarity=0.312 Sum_probs=67.9
Q ss_pred CCcccCCCC---CCcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccc-cccccccCCCCC
Q 005824 446 CNGCKRPAF---GLMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCN-KHCHACARPADG 521 (675)
Q Consensus 446 C~~C~~~~~---g~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~C~~C~~~~~g 521 (675)
|-.|.+.-. ...-.|..||..+|..|...+..+.- -+ |-.+.-... +. +.|.-|-.. +|
T Consensus 196 C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG--~W-------lCrkCi~~~-------~~i~~C~fCps~-dG 258 (669)
T COG5141 196 CTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEG--FW-------LCRKCIYGE-------YQIRCCSFCPSS-DG 258 (669)
T ss_pred hHhccccccCCcceEEEecCcchhhhhhcccceecCcc--hh-------hhhhhcccc-------cceeEEEeccCC-CC
Confidence 556655533 23477999999999999876532210 00 101110000 01 226666542 23
Q ss_pred ceeecCCCCcccccccCCCCcceee-CCeeeEecCC----CCcc---cccccccccccCCCCCCCCeEEeec--CCCeeE
Q 005824 522 FVYHCEEKGRNLHPCCFNLPRKLAI-GSVEFVLSDK----ELSQ---ECIWCESKRLQGSASDNWGWSYVSK--CNNYHC 591 (675)
Q Consensus 522 ~~Y~C~~C~f~lH~~Ca~lp~~i~~-~~h~~~l~~~----~~~~---~C~~C~~~~~~~~~~~~~~w~Y~c~--~c~~~l 591 (675)
-+ .=..=+--.|.-||..-+.+.- +-|...+-.. ..++ .|..|++.. |-.-.|. .|--.+
T Consensus 259 aF-kqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~~---------GtcIqCs~~nC~~aY 328 (669)
T COG5141 259 AF-KQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEFG---------GTCIQCSYFNCTRAY 328 (669)
T ss_pred ce-eeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEcccC---------cceeeecccchhhhh
Confidence 22 2233456689999976555542 2222222221 1122 599999864 3344564 488889
Q ss_pred eccchHHH
Q 005824 592 HAFCSTEM 599 (675)
Q Consensus 592 H~~C~~~~ 599 (675)
|+.||.+.
T Consensus 329 HVtCArra 336 (669)
T COG5141 329 HVTCARRA 336 (669)
T ss_pred hhhhhhhc
Confidence 99999874
No 198
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=81.08 E-value=0.18 Score=53.92 Aligned_cols=42 Identities=29% Similarity=0.622 Sum_probs=35.1
Q ss_pred ccceecccccCccCCcccCCCCCCc---ccccCCCceeccccccc
Q 005824 433 HDLQLKNHKILSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 474 (675)
Q Consensus 433 H~l~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 474 (675)
|.+....+..+..|..|+....|.+ .+|..|.|+.|+.||..
T Consensus 268 HTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~ 312 (888)
T KOG4236|consen 268 HTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMK 312 (888)
T ss_pred eeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhh
Confidence 6676667777888999999876654 89999999999999854
No 199
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=80.97 E-value=77 Score=33.28 Aligned_cols=208 Identities=12% Similarity=0.106 Sum_probs=98.4
Q ss_pred CCCcEEEEe-CCCCCHHHH--HHHHHHHHHcCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeC
Q 005824 142 NVKNAVVTV-PAYFTDSQR--QATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGK 218 (675)
Q Consensus 142 ~~~~~vitv-P~~~~~~~r--~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~ 218 (675)
+++.+.+|. |..|+.-.. ..-+-.+...+.+ +.=++.-+|-+++..+......+ +.+=+-||+|.+.. ...
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~P-ligV~HlegHi~a~~l~~~~~~P---l~LlVSGGhT~l~~--~~~ 143 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKP-LVGVNHCVAHIEMGRLVTGAENP---VVLYVSGGNTQVIA--YSE 143 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCC-EeecchHHHHHHHHhhccCCCCC---eEEEEeCCceEEEE--ecC
Confidence 455666665 544443221 2222233333444 44566666666654443332222 67777888998776 344
Q ss_pred CEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHHHHccCC-CceEEEEecccC---
Q 005824 219 GIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKD-ISGSPRAVQRLTTACERAKRTLSST-SQTTIEIDSLYE--- 293 (675)
Q Consensus 219 ~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~e~~K~~ls~~-~~~~~~i~~~~~--- 293 (675)
+.++++....| .--|+.||+- .+.| +.. .+..-..+++|...... ...|... ....+.+.++..
T Consensus 144 ~~~~ilG~T~D-da~Gea~DKv-ar~L--------GL~~yp~gGp~iE~lA~~g~~-~~~~P~~~~~~dfSFSGlkTav~ 212 (345)
T PTZ00340 144 HRYRIFGETID-IAVGNCLDRF-ARLL--------NLSNDPAPGYNIEQLAKKGKN-LIELPYVVKGMDMSFSGILTYIE 212 (345)
T ss_pred CeEEEEEeecc-cchhHHHHHH-HHHh--------CCCCCCCChHHHHHHHhhCCC-ccCCCCCCCCCcEECccHHHHHH
Confidence 67888888775 4456666643 2222 222 11012333333211100 0001000 011111111100
Q ss_pred -----Cce-e-------E-EEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhc
Q 005824 294 -----GID-F-------S-SVITRARFEELNM-DLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFF 358 (675)
Q Consensus 294 -----~~~-~-------~-~~itr~~~~~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~ 358 (675)
+.. . . ......++...++ -+++-+.+.+..+++.. .++.|+++||-+...+|+++|++..
T Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 213 DLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 000 0 0 0011223322222 23444455555555542 4578999999999999999999987
Q ss_pred C--CCcccccCCchhh
Q 005824 359 N--GKRLCQNINPDEA 372 (675)
Q Consensus 359 ~--~~~v~~~~~p~~a 372 (675)
. +.++..+ .|..+
T Consensus 288 ~~~~~~~~~p-~~~~c 302 (345)
T PTZ00340 288 KERGGKLFAM-DERYC 302 (345)
T ss_pred HHcCCEEEeC-ChHhh
Confidence 3 4555554 44443
No 200
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=80.37 E-value=50 Score=35.84 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH-----cCCc------eeEeeChhHHHHHHhccccCC---CCC-ceEEEEEeCCCcEEEEEEE
Q 005824 156 DSQRQATKDAGAM-----AGLN------VLKIISEPTAAAIAYGLHRKA---SSE-KNVLIFDLGGGTFDVSLLT 215 (675)
Q Consensus 156 ~~~r~~l~~a~~~-----Agl~------~v~li~Ep~Aaa~~~~~~~~~---~~~-~~vlvvDiGggT~dvsv~~ 215 (675)
+..|+.+++...+ =|++ ...+++-|.|+..+..+-... ..+ ..+++||+||-|||+--+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 4456666666322 2442 345677788876554322221 122 3489999999999994433
No 201
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=80.35 E-value=1.6 Score=37.48 Aligned_cols=85 Identities=14% Similarity=0.295 Sum_probs=49.8
Q ss_pred cCCcccCCCCCCcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccCCCCCcee
Q 005824 445 ECNGCKRPAFGLMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPADGFVY 524 (675)
Q Consensus 445 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~g~~Y 524 (675)
.|-.|...+ ..++-..-+--.|..||..-+......+... -+.. +...+... ....|..|++. .|..-
T Consensus 2 ~C~lC~~~~--Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~-~~v~-~~~i~~~~-------~~~~C~iC~~~-~G~~i 69 (110)
T PF13832_consen 2 SCVLCPKRG--GALKRTSDGQWVHVLCALWIPEVIFNNGESM-EPVD-ISNIPPSR-------FKLKCSICGKS-GGACI 69 (110)
T ss_pred ccEeCCCCC--CcccCccCCcEEEeEccceeCccEEeechhc-Cccc-ceeecchh-------cCCcCcCCCCC-CceeE
Confidence 367776652 2234444577899999987422221211110 1111 11111110 12669999987 67788
Q ss_pred ecCC--CCcccccccCCCC
Q 005824 525 HCEE--KGRNLHPCCFNLP 541 (675)
Q Consensus 525 ~C~~--C~f~lH~~Ca~lp 541 (675)
+|.. |...+||-||..-
T Consensus 70 ~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 70 KCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred EcCCCCCCcCCCHHHHHHC
Confidence 9997 9999999999764
No 202
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=77.67 E-value=12 Score=39.31 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCccEEEEecCCcCh-HHHHHHHH---Hhc--CCCcccccCCchhhHHhHHHHHH
Q 005824 333 SRVDDVVIVGGSARI-PKVQQLLQ---EFF--NGKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 333 ~~i~~VvLvGG~s~~-p~l~~~l~---~~~--~~~~v~~~~~p~~ava~Gaa~~a 381 (675)
..++.|+++|..-+. |...+.|+ +.| +..+.....+....-|.||.+..
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 457899999998864 77788888 555 35577777899999999998753
No 203
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.38 E-value=2.9 Score=47.81 Aligned_cols=43 Identities=30% Similarity=0.532 Sum_probs=30.1
Q ss_pred eEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEe
Q 005824 174 LKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIG 217 (675)
Q Consensus 174 v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~ 217 (675)
..+.+=|.|..++.........+ +++++||||.|||++++.-+
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~G 298 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIIDG 298 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeecC
Confidence 44667777766655443222233 69999999999999999843
No 204
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=76.99 E-value=16 Score=34.13 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=30.3
Q ss_pred CCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEE
Q 005824 170 GLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLL 214 (675)
Q Consensus 170 gl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~ 214 (675)
++ ++.+.++..|+|++..........+.++.+.+|.| .-.+++
T Consensus 92 ~~-pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 92 GV-PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp TS-EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred ce-EEEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 44 67899999999988766444335578888889876 344444
No 205
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=76.84 E-value=11 Score=40.00 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=56.1
Q ss_pred EEeHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCc-hhhHHhHH
Q 005824 300 VITRARFEELNMDLFRKCI-KHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINP-DEAVAYGA 377 (675)
Q Consensus 300 ~itr~~~~~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p-~~ava~Ga 377 (675)
.-...++...++..+++++ ..++..++..+.+ +.|.|+||.+..-.+-..|.+..+-.++..++-+ |..+|+||
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~~----~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGa 207 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTGID----NNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGA 207 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHH
Confidence 3467788877888777765 4555666664422 3499999999998888888887533456555544 67899999
Q ss_pred HHHHHHHcC
Q 005824 378 AVQAAVLSG 386 (675)
Q Consensus 378 a~~a~~l~~ 386 (675)
|+++....+
T Consensus 208 A~~~~~~~~ 216 (360)
T PF02543_consen 208 ALYAWHELG 216 (360)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999986654
No 206
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=76.78 E-value=1.3e+02 Score=33.42 Aligned_cols=82 Identities=21% Similarity=0.184 Sum_probs=55.5
Q ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHH-HHHHHhcCCCcccccC-CchhhHHhHH
Q 005824 300 VITRARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQ-QLLQEFFNGKRLCQNI-NPDEAVAYGA 377 (675)
Q Consensus 300 ~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~-~~l~~~~~~~~v~~~~-~p~~ava~Ga 377 (675)
.....++...++..+++++..+...+.+.. ..+.+.++||-+..-..- ..|.+.+ ..++...+ --|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 344566677777777777776666665431 146899999988776555 5555555 44555444 3467799999
Q ss_pred HHHHHHHcC
Q 005824 378 AVQAAVLSG 386 (675)
Q Consensus 378 a~~a~~l~~ 386 (675)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999987655
No 207
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=76.57 E-value=2.3 Score=50.43 Aligned_cols=133 Identities=17% Similarity=0.291 Sum_probs=73.6
Q ss_pred ccCccCCcccCCCCC---CcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccC
Q 005824 441 KILSECNGCKRPAFG---LMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACAR 517 (675)
Q Consensus 441 ~~~~~C~~C~~~~~g---~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~ 517 (675)
+....|..|.+--.. ..-.|..||..+|..|...|..+...--.. +-+-++.+. ..|..|-.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr-----~Cl~s~~~~----------v~c~~cp~ 281 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCR-----RCLQSPQRP----------VRCLLCPS 281 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeeh-----hhccCcCcc----------cceEeccC
Confidence 456679999877433 338899999999999987553221100000 001111111 23666654
Q ss_pred CCCCceeecCCCCcccccccCCCCcceeeCCeeeEecCC-------CC--cccccccccccccCCCCCCCCeEEeec--C
Q 005824 518 PADGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDK-------EL--SQECIWCESKRLQGSASDNWGWSYVSK--C 586 (675)
Q Consensus 518 ~~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~-------~~--~~~C~~C~~~~~~~~~~~~~~w~Y~c~--~ 586 (675)
... .+.=..-+--.|..||..=+.+.-. +.+.+.+- .+ -..|..|+.++ .+-+=.|. .
T Consensus 282 ~~g--AFkqt~dgrw~Hv~caiwipev~F~-nt~~~E~I~~i~~i~~aRwkL~cy~cK~~~--------~gaciqcs~~~ 350 (1051)
T KOG0955|consen 282 KGG--AFKQTDDGRWAHVVCAIWIPEVSFA-NTVFLEPIDSIENIPPARWKLTCYICKQKG--------LGACIQCSKAN 350 (1051)
T ss_pred CCC--cceeccCCceeeeehhhcccccccc-cchhhccccchhcCcHhhhhceeeeeccCC--------CCcceecchhh
Confidence 332 2222344566899999765444321 11111100 01 13699999875 23444664 3
Q ss_pred CCeeEeccchHHH
Q 005824 587 NNYHCHAFCSTEM 599 (675)
Q Consensus 587 c~~~lH~~C~~~~ 599 (675)
|--++|+.|+-+-
T Consensus 351 c~~a~hvtca~~a 363 (1051)
T KOG0955|consen 351 CYTAFHVTCARRA 363 (1051)
T ss_pred hhhhhhhhhHhhc
Confidence 8889999998763
No 208
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=76.42 E-value=2.1 Score=25.54 Aligned_cols=20 Identities=30% Similarity=0.866 Sum_probs=14.1
Q ss_pred cccccCCC----CCceeecCCCCc
Q 005824 512 CHACARPA----DGFVYHCEEKGR 531 (675)
Q Consensus 512 C~~C~~~~----~g~~Y~C~~C~f 531 (675)
|..|+..+ .+..|.|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 56676643 366899999986
No 209
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=76.15 E-value=45 Score=32.25 Aligned_cols=75 Identities=16% Similarity=0.326 Sum_probs=44.6
Q ss_pred EeHHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcC--CCcccccCCchhhHHhHH
Q 005824 301 ITRARFE-ELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNINPDEAVAYGA 377 (675)
Q Consensus 301 itr~~~~-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~Ga 377 (675)
++.+++- ++-+.++.-+.+..++++.-.+ -+.|+++||-+..-.||+++..... +-++.. -|-.+++-.|+
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~fa-TDeRfCIDNG~ 298 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFA-TDERFCIDNGV 298 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEe-cccceeeeCch
Confidence 4444442 3334445555555556665543 2589999999999999999988773 223322 24455555565
Q ss_pred HHHH
Q 005824 378 AVQA 381 (675)
Q Consensus 378 a~~a 381 (675)
-+..
T Consensus 299 MIA~ 302 (336)
T KOG2708|consen 299 MIAQ 302 (336)
T ss_pred HHHH
Confidence 5433
No 210
>PRK00047 glpK glycerol kinase; Provisional
Probab=75.69 E-value=2.6 Score=47.09 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.4
Q ss_pred CCcCCCCcEEEEecccccEEEEEEEC
Q 005824 1 MARKEGVLGIGIDLGTTYSCVGVWQH 26 (675)
Q Consensus 1 M~~~~~~~viGID~GTt~s~va~~~~ 26 (675)
|+|++ .+||||+|||++++++++.
T Consensus 1 ~~m~~--~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 1 MMMKK--YILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CCccC--EEEEEecCCCceEEEEECC
Confidence 67763 8999999999999999853
No 211
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=75.68 E-value=1.4 Score=44.23 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=48.6
Q ss_pred ccccccccCCCCCceeecCCCCcccccccCCCCcceeeCCeeeEec--------CCCCcccccccccccccCCCCCCCCe
Q 005824 509 NKHCHACARPADGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLS--------DKELSQECIWCESKRLQGSASDNWGW 580 (675)
Q Consensus 509 ~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~--------~~~~~~~C~~C~~~~~~~~~~~~~~w 580 (675)
++.|-.|+-.+-...-.|+.|++.|=.. ..|.+... |-+.|. ....+..|-+|..+.. ..-
T Consensus 276 Gy~CP~CkakvCsLP~eCpiC~ltLVss-~hLARSyh---hL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~-------~~~ 344 (378)
T KOG2807|consen 276 GYFCPQCKAKVCSLPIECPICSLTLVSS-PHLARSYH---HLFPLKPFVEIPETEYNGSRFCFACQGELL-------SSG 344 (378)
T ss_pred ceeCCcccCeeecCCccCCccceeEecc-hHHHHHHH---hhcCCcchhhccccccCCCcceeeeccccC-------CCC
Confidence 3778888877777777888888665310 11222222 222221 1123346999955432 467
Q ss_pred EEeecCCCeeEeccchHHH
Q 005824 581 SYVSKCNNYHCHAFCSTEM 599 (675)
Q Consensus 581 ~Y~c~~c~~~lH~~C~~~~ 599 (675)
.|+|..|.-++++.|-.=+
T Consensus 345 ~y~C~~Ck~~FCldCDv~i 363 (378)
T KOG2807|consen 345 RYRCESCKNVFCLDCDVFI 363 (378)
T ss_pred cEEchhccceeeccchHHH
Confidence 8999999999999986544
No 212
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=75.28 E-value=1.1e+02 Score=31.89 Aligned_cols=224 Identities=16% Similarity=0.223 Sum_probs=104.8
Q ss_pred eHHHHHHHHHHHHHHHHHHHh---C---CCCCcEEEEeCCCCCHHHHHH--HHHH-HHHcCCceeEeeChhHHHHHHhcc
Q 005824 119 AAEDISSMVLAKMREIAKAYL---G---SNVKNAVVTVPAYFTDSQRQA--TKDA-GAMAGLNVLKIISEPTAAAIAYGL 189 (675)
Q Consensus 119 ~~~~l~~~~L~~l~~~a~~~~---~---~~~~~~vitvP~~~~~~~r~~--l~~a-~~~Agl~~v~li~Ep~Aaa~~~~~ 189 (675)
-|+.....-.+.+-...++.+ + .+++-+.+|.=......-+-- +-++ +...+ .++.=++--++-.++..+
T Consensus 42 vPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~-kPli~VnH~~gHi~a~~l 120 (342)
T COG0533 42 VPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALN-KPLIPVNHLEGHIEAARL 120 (342)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhC-CCEeecchHHHHHHHHHh
Confidence 455555555555444444333 2 245556666544444333211 1112 22223 344456666666665444
Q ss_pred ccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH
Q 005824 190 HRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTT 269 (675)
Q Consensus 190 ~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 269 (675)
..+. ....+..=+-||.|.+..++- -+.++++...-|.. -|+.||.- . +..+...+..| ..++|
T Consensus 121 ~~~~--~~p~v~LlVSGGHTqli~~~~-~g~y~ilGeTlDdA-~Gea~DKv-A--------R~lGL~yPGGp-~Ie~l-- 184 (342)
T COG0533 121 ETGL--AFPPVALLVSGGHTQLIAVRG-IGRYEVLGETLDDA-AGEAFDKV-A--------RLLGLGYPGGP-AIEKL-- 184 (342)
T ss_pred ccCC--CCCcEEEEEecCceEEEEEcC-CCcEEEEeeechhh-hhHHHHHH-H--------HHhCCCCCCcH-HHHHH--
Confidence 3332 233444445677776655442 15688888877543 45555532 2 22233333333 11211
Q ss_pred HHHHHH---HHccC----CCceEEEEecccC--------CceeEEEEeHHHHHHHHH----HHHHHHHHHHHHHHHcCCC
Q 005824 270 ACERAK---RTLSS----TSQTTIEIDSLYE--------GIDFSSVITRARFEELNM----DLFRKCIKHVDMCLRNGKM 330 (675)
Q Consensus 270 ~~e~~K---~~ls~----~~~~~~~i~~~~~--------~~~~~~~itr~~~~~~~~----~~~~~i~~~i~~~l~~~~~ 330 (675)
+++.. ..|.- .....+++.++.. ... ...+..++.++++. ..++-+.+...++++..
T Consensus 185 -A~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~-~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~-- 260 (342)
T COG0533 185 -AKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQ-KEELNEEDKEDIAASFQEAVFDMLVEKTERALKHT-- 260 (342)
T ss_pred -HhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 11111 00100 0001111111100 000 01122333333333 24555566666677664
Q ss_pred CCCCccEEEEecCCcChHHHHHHHHHhc--CCCccccc
Q 005824 331 DKSRVDDVVIVGGSARIPKVQQLLQEFF--NGKRLCQN 366 (675)
Q Consensus 331 ~~~~i~~VvLvGG~s~~p~l~~~l~~~~--~~~~v~~~ 366 (675)
..+.++++||-+....||+.+++.. .+.++..+
T Consensus 261 ---~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p 295 (342)
T COG0533 261 ---GKKELVIAGGVAANSRLREMLEEMCKERGAEVYIP 295 (342)
T ss_pred ---CCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcC
Confidence 3568999999999999999999876 24445443
No 213
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=75.08 E-value=2.7 Score=35.02 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.8
Q ss_pred cEEEEecccccEEEEEEEC
Q 005824 8 LGIGIDLGTTYSCVGVWQH 26 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~ 26 (675)
.++|||+|.|++++|+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 5899999999999999853
No 214
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=75.03 E-value=8.3 Score=44.74 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=38.2
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcC--CCcccccCC---chhhHHhHHHHHHH
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCQNIN---PDEAVAYGAAVQAA 382 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~--~~~v~~~~~---p~~ava~Gaa~~a~ 382 (675)
.++.|+|+||-+....|.+.|.+.+. +.++..+.. -|.+++.|.+++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998873 355555432 36789999988763
No 215
>PTZ00297 pantothenate kinase; Provisional
Probab=73.19 E-value=2.7e+02 Score=35.51 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=37.5
Q ss_pred CCccEEEEecC-CcChHHHHHHHHHhc-----CCCcccccCCchhhHHhHHHHHH
Q 005824 333 SRVDDVVIVGG-SARIPKVQQLLQEFF-----NGKRLCQNINPDEAVAYGAAVQA 381 (675)
Q Consensus 333 ~~i~~VvLvGG-~s~~p~l~~~l~~~~-----~~~~v~~~~~p~~ava~Gaa~~a 381 (675)
.+++.|+++|+ ....|...+.|.... ++.+.....+....-|+||++..
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 56889999999 566788888887654 34566666677888999998754
No 216
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=72.73 E-value=3.7 Score=36.78 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.0
Q ss_pred CcEEEEecccccEEEEEEECCe
Q 005824 7 VLGIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 7 ~~viGID~GTt~s~va~~~~g~ 28 (675)
|.++|||+|+..+++|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 5789999999999999997664
No 217
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=72.19 E-value=1.8 Score=47.66 Aligned_cols=46 Identities=22% Similarity=0.480 Sum_probs=34.2
Q ss_pred eeecccceecccccCccCCcccCCCCCCcccccCCCceeccccccc
Q 005824 429 THRAHDLQLKNHKILSECNGCKRPAFGLMYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 429 ~h~~H~l~l~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~ 474 (675)
.+..|.+..+..-..-.|+-|..+.+-.-++|..|.|.+|..|+..
T Consensus 175 pl~~H~~~rktf~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~ 220 (678)
T KOG0193|consen 175 PLTTHNFVRKTFFPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPR 220 (678)
T ss_pred CccceeeeeccccchhhhhhhcchhhhcccccCCCCCccccccCCC
Confidence 4455665555555555688777777666699999999999999754
No 218
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=71.50 E-value=4.1 Score=29.29 Aligned_cols=34 Identities=29% Similarity=0.651 Sum_probs=28.0
Q ss_pred ccccccCC-CCCceeecCCCCcccccccCCCCcce
Q 005824 511 HCHACARP-ADGFVYHCEEKGRNLHPCCFNLPRKL 544 (675)
Q Consensus 511 ~C~~C~~~-~~g~~Y~C~~C~f~lH~~Ca~lp~~i 544 (675)
+|..|+.. ..+..-.|..|+--.|..|..++...
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~ 35 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKA 35 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhh
Confidence 37788873 47778899999999999999998653
No 219
>PTZ00107 hexokinase; Provisional
Probab=70.91 E-value=41 Score=36.94 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCC--ceeEeeChhHHHHHHhcccc
Q 005824 155 TDSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLHR 191 (675)
Q Consensus 155 ~~~~r~~l~~a~~~Agl--~~v~li~Ep~Aaa~~~~~~~ 191 (675)
...-.+.|.+|.++-|+ +++.++++..|..++.....
T Consensus 193 G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 193 GKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 34457888999988887 56889999999888766554
No 220
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=70.88 E-value=82 Score=33.77 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCC--ceeEeeChhHHHHHHhccccCC-------------------------C----CCceEEEEEeCCC
Q 005824 159 RQATKDAGAMAGL--NVLKIISEPTAAAIAYGLHRKA-------------------------S----SEKNVLIFDLGGG 207 (675)
Q Consensus 159 r~~l~~a~~~Agl--~~v~li~Ep~Aaa~~~~~~~~~-------------------------~----~~~~vlvvDiGgg 207 (675)
.+.|.++++.-++ ..+.++++.+++.++-...... . ..+.=++|++--|
T Consensus 184 v~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwG 263 (466)
T COG5026 184 VRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWG 263 (466)
T ss_pred HHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEeccc
Confidence 5677788877776 5688899999988763221110 0 1122267777778
Q ss_pred cEEEEEEEEeCCEEEEEEEcCCCCCcHHHHH
Q 005824 208 TFDVSLLTIGKGIFKVKATAGDTHLGGEDFD 238 (675)
Q Consensus 208 T~dvsv~~~~~~~~~~l~~~~~~~~GG~~id 238 (675)
.||.-...+....+.++.......-|=..|+
T Consensus 264 sfdn~~~~Lp~t~ydv~idq~s~~pg~~~~E 294 (466)
T COG5026 264 SFDNELSVLPRTKYDVLIDQESPNPGHQIFE 294 (466)
T ss_pred ccCcceeeccccceeeeeccCCCCcchHHHh
Confidence 8885444444445555555544444433333
No 221
>PLN02405 hexokinase
Probab=70.20 E-value=43 Score=37.08 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeeChhHHHHHHhccc
Q 005824 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLH 190 (675)
Q Consensus 156 ~~~r~~l~~a~~~Agl--~~v~li~Ep~Aaa~~~~~~ 190 (675)
..-.+.|++|.++-|+ +.+.++++..+..++....
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~ 241 (497)
T PLN02405 205 QDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYY 241 (497)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcC
Confidence 3447888999988887 4688999999988776554
No 222
>PLN02362 hexokinase
Probab=70.01 E-value=45 Score=37.02 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeeChhHHHHHHhccc
Q 005824 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLH 190 (675)
Q Consensus 156 ~~~r~~l~~a~~~Agl--~~v~li~Ep~Aaa~~~~~~ 190 (675)
..-.+.|.+|.++-|+ +++.++++..|..++....
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~ 241 (509)
T PLN02362 205 KDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYH 241 (509)
T ss_pred chHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcC
Confidence 3457888999988886 5688999999987775443
No 223
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=69.60 E-value=4.8 Score=40.10 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.3
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
+++|||+|||++++++++.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 47999999999999998644
No 224
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=69.41 E-value=2.4 Score=44.50 Aligned_cols=34 Identities=26% Similarity=0.719 Sum_probs=29.0
Q ss_pred cCccCCcccCCCCCCc-ccccCC-CceecccccccC
Q 005824 442 ILSECNGCKRPAFGLM-YRCELC-NFNLHIPCMFID 475 (675)
Q Consensus 442 ~~~~C~~C~~~~~g~~-Y~C~~C-~f~lH~~Ca~~~ 475 (675)
..+.|+.|...+.+.. -+|.+| ||+|+..|....
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~G 48 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVG 48 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHhcc
Confidence 4567999999999977 999999 599999996543
No 225
>PLN02914 hexokinase
Probab=68.48 E-value=42 Score=37.00 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeeChhHHHHHHhccc
Q 005824 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLH 190 (675)
Q Consensus 156 ~~~r~~l~~a~~~Agl--~~v~li~Ep~Aaa~~~~~~ 190 (675)
..-.+.|.+|.++-|+ +++.++++..|..++....
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~ 241 (490)
T PLN02914 205 KDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW 241 (490)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcC
Confidence 4457888999988776 5688899999988776554
No 226
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=68.40 E-value=5.4 Score=44.52 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.3
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++|+.+++.+
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCC
Confidence 89999999999999998655
No 227
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=68.24 E-value=2.6 Score=47.12 Aligned_cols=43 Identities=30% Similarity=0.598 Sum_probs=32.3
Q ss_pred CccCCcccCC-CCCCcccccCC-CceecccccccCCcCccccCCCC
Q 005824 443 LSECNGCKRP-AFGLMYRCELC-NFNLHIPCMFIDRKPAAKHEFFG 486 (675)
Q Consensus 443 ~~~C~~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~~~~~~~~~h~~~~ 486 (675)
...|++|++. +.|.+|+|-.| |++|+..|..... ....|-.|+
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgr-aak~hk~~~ 647 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGR-AAKGHKMHY 647 (966)
T ss_pred hhhcchhhhCccceeeeeehhhcChhHHhhHhhhcc-cccCCCCCC
Confidence 4469999765 88999999999 9999999976542 233455444
No 228
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=67.99 E-value=49 Score=33.12 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCC
Q 005824 170 GLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGG 207 (675)
Q Consensus 170 gl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGgg 207 (675)
++ ++.+.++..|+|++..........+.++.+-+|.|
T Consensus 97 ~~-pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG 133 (256)
T PRK13311 97 QR-EVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG 133 (256)
T ss_pred CC-CEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC
Confidence 55 47799999999988755433334567888888855
No 229
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=67.46 E-value=12 Score=39.50 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=18.0
Q ss_pred CceEEEEEeCCCcEEEEEEE
Q 005824 196 EKNVLIFDLGGGTFDVSLLT 215 (675)
Q Consensus 196 ~~~vlvvDiGggT~dvsv~~ 215 (675)
..++.|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 67899999999999998765
No 230
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.64 E-value=1.8 Score=42.44 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=42.1
Q ss_pred ceeecCCCCcccccccCCCCcceeeCCeeeEecCCCCcccccccccccccCCCCCCCCeEEeecCCCeeEeccchHH
Q 005824 522 FVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTE 598 (675)
Q Consensus 522 ~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~ 598 (675)
-.-+|..|.-.-||.|..+|..+.----...+. -.....|.+|++... ..-.-.|+-|+--+|.-|+.-
T Consensus 278 S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~-C~~C~lC~IC~~P~~-------E~E~~FCD~CDRG~HT~CVGL 346 (381)
T KOG1512|consen 278 SWIVCKPCATRPHPYCVAMIPELVGQYKTYFWK-CSSCELCRICLGPVI-------ESEHLFCDVCDRGPHTLCVGL 346 (381)
T ss_pred cceeecccccCCCCcchhcCHHHHhHHhhcchh-hcccHhhhccCCccc-------chheeccccccCCCCcccccc
Confidence 356899999999999999997664321111110 001123444444321 233457888998899999854
No 231
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.94 E-value=10 Score=37.32 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=47.4
Q ss_pred eEEEEEeCCCcEEEEEEEEeCC-EEE----------------------EEEEcCCCCCcHHHHHHHHHHHHHHHHHhhcc
Q 005824 198 NVLIFDLGGGTFDVSLLTIGKG-IFK----------------------VKATAGDTHLGGEDFDNRMVNHFIQEFKRKKK 254 (675)
Q Consensus 198 ~vlvvDiGggT~dvsv~~~~~~-~~~----------------------~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~ 254 (675)
+++++|+|.||.|+-.+.-... ... -+...+ ...||--++.++.+++.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc------C
Confidence 5799999999999988764321 000 122222 467899999999998833 3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 005824 255 KDISGSPRAVQRLTTACERAKRT 277 (675)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~ 277 (675)
..+-...++...+.+..|++++.
T Consensus 75 ~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHhh
Confidence 34444555666666667777654
No 232
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=65.86 E-value=3.2 Score=30.59 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=14.8
Q ss_pred cccccccCCCCCceeecCCCCcc
Q 005824 510 KHCHACARPADGFVYHCEEKGRN 532 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f~ 532 (675)
..|.-|++ .|..|.|..|+|.
T Consensus 39 ~Rc~~CRk--~g~~Y~Cp~CGF~ 59 (61)
T COG2888 39 YRCAKCRK--LGNPYRCPKCGFE 59 (61)
T ss_pred ehhhhHHH--cCCceECCCcCcc
Confidence 34666665 4558999999984
No 233
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=65.68 E-value=1.4 Score=45.96 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=26.1
Q ss_pred cCCcccCCCCCCcccccCCCceeccccccc
Q 005824 445 ECNGCKRPAFGLMYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 445 ~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~ 474 (675)
.|-+|.+.+.|.---|+.=|-.+|..|..-
T Consensus 276 iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC 305 (468)
T KOG1701|consen 276 ICAFCHKTVSGQGLAVEAMDQLFHVQCFTC 305 (468)
T ss_pred hhhhcCCcccCcchHHHHhhhhhcccceeh
Confidence 699999999998888888888899999654
No 234
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=64.17 E-value=1.9e+02 Score=30.20 Aligned_cols=220 Identities=18% Similarity=0.164 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhCCC---CCcEEEEeCCCCCHHHHHHHHHHHHHcC-C-ceeEeeChhHHHHHHhccccCCCCCceE
Q 005824 125 SMVLAKMREIAKAYLGSN---VKNAVVTVPAYFTDSQRQATKDAGAMAG-L-NVLKIISEPTAAAIAYGLHRKASSEKNV 199 (675)
Q Consensus 125 ~~~L~~l~~~a~~~~~~~---~~~~vitvP~~~~~~~r~~l~~a~~~Ag-l-~~v~li~Ep~Aaa~~~~~~~~~~~~~~v 199 (675)
..-+..+.+.+-...+.. .+-+.+|+=....-.-+.-+.-|-..|+ + +++.=+.--+|-|+...+..+ ..+-.+
T Consensus 83 r~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~-~v~FPF 161 (405)
T KOG2707|consen 83 RENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD-SVRFPF 161 (405)
T ss_pred HHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC-CcCCce
Confidence 334445555544444433 3446667665665554555555544443 2 334445667777777665543 355667
Q ss_pred EEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHc-
Q 005824 200 LIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKRTL- 278 (675)
Q Consensus 200 lvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~l- 278 (675)
+.+=+-||.+-+.+.+- -+.++++...-+. .=|+.||.. .++| +. ...+......-.++|..-..-
T Consensus 162 l~lLvSGGH~llvla~~-~~~~~llg~TvDi-ApGe~lDK~-ar~L--------gl--~~~~e~~~~~g~aie~la~~~s 228 (405)
T KOG2707|consen 162 LALLVSGGHTLLVLANG-VGDHELLGQTVDI-APGEALDKC-ARRL--------GL--LGHPEDARSGGKAIEHLANRAS 228 (405)
T ss_pred eeEeeeCCceEEEEecc-ccceeeeeccccc-chHHHHHHH-HHHh--------cC--CCCccchhhhhhHHHHHHhccC
Confidence 77778888887766553 3456667666543 345666643 2222 11 111111111111111111100
Q ss_pred -----------cCCCceEEEEecccC---------CceeEEEEeHHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCCCccE
Q 005824 279 -----------SSTSQTTIEIDSLYE---------GIDFSSVITRARFE-ELNMDLFRKCIKHVDMCLRNGKMDKSRVDD 337 (675)
Q Consensus 279 -----------s~~~~~~~~i~~~~~---------~~~~~~~itr~~~~-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 337 (675)
.......+.+..+.. +..-.......+|. ++-..++.-|.+....+++...+..+.+..
T Consensus 229 ~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~ 308 (405)
T KOG2707|consen 229 ADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQ 308 (405)
T ss_pred ccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCce
Confidence 011111111111100 00000011223332 222234444555555566655556677789
Q ss_pred EEEecCCcChHHHHHHHHHhc
Q 005824 338 VVIVGGSARIPKVQQLLQEFF 358 (675)
Q Consensus 338 VvLvGG~s~~p~l~~~l~~~~ 358 (675)
.++.||-++..+|+..|+...
T Consensus 309 lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 309 LVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred EEEcCCccchHHHHHHHHHHH
Confidence 999999999999999999876
No 235
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=63.71 E-value=2.3 Score=42.27 Aligned_cols=86 Identities=21% Similarity=0.416 Sum_probs=44.2
Q ss_pred cCccCCcccCCCCCCcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccCC---
Q 005824 442 ILSECNGCKRPAFGLMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARP--- 518 (675)
Q Consensus 442 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~--- 518 (675)
..|.|-.|+...-..--.|..|+..|=.. ....-.+||-.||+.+...|.....+ ...|-+|..+
T Consensus 307 gGy~CP~CktkVCsLPi~CP~Csl~Lils-------thLarSyhhL~PLk~f~E~p~~~~~k-----s~~Cf~CQ~~fp~ 374 (421)
T COG5151 307 GGYECPVCKTKVCSLPISCPICSLQLILS-------THLARSYHHLYPLKPFVEKPEGTNPK-----STHCFVCQGPFPK 374 (421)
T ss_pred CceeCCcccceeecCCccCcchhHHHHHH-------HHHHHHHHhhccCcccccccCCCCCC-----CccceeccCCCCC
Confidence 34555555554433334555555443211 12222344445556555555333211 1348888762
Q ss_pred ---------CCCceeecCCCCcccccccCC
Q 005824 519 ---------ADGFVYHCEEKGRNLHPCCFN 539 (675)
Q Consensus 519 ---------~~g~~Y~C~~C~f~lH~~Ca~ 539 (675)
.....|+|+.|.-.+...|-.
T Consensus 375 ~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 375 PPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred CCCCcccccccccceechhhhhhhhhhhHH
Confidence 134579999888666666643
No 236
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=60.92 E-value=3.5 Score=40.29 Aligned_cols=98 Identities=24% Similarity=0.522 Sum_probs=58.7
Q ss_pred CccCCcccCCC-----CC---CcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCcccccccccccc
Q 005824 443 LSECNGCKRPA-----FG---LMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHA 514 (675)
Q Consensus 443 ~~~C~~C~~~~-----~g---~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~ 514 (675)
..+||.|-... .| ..-.|+.|.=.=|.+|........+ ..+.+ .|.|-.| ++|+.
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~--------avk~y--------rwqciec-k~csi 286 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIA--------AVKTY--------RWQCIEC-KYCSI 286 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHH--------HHHhh--------eeeeeec-ceecc
Confidence 34588885432 12 1267888877777777543211000 00010 1222111 56999
Q ss_pred ccCCC-CCceeecCCCCcccccccCCCCcceeeCCeeeEecCCCCccccccccc
Q 005824 515 CARPA-DGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCES 567 (675)
Q Consensus 515 C~~~~-~g~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~~~~~~C~~C~~ 567 (675)
||-.- ..-..-|.+|+--.|+-|..-|.. .+++++|.|..|-.
T Consensus 287 cgtsenddqllfcddcdrgyhmyclsppm~----------eppegswsc~KOG~ 330 (336)
T KOG1244|consen 287 CGTSENDDQLLFCDDCDRGYHMYCLSPPMV----------EPPEGSWSCHLCLE 330 (336)
T ss_pred ccCcCCCceeEeecccCCceeeEecCCCcC----------CCCCCchhHHHHHH
Confidence 99843 445667999999999999876642 35668899999854
No 237
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=60.41 E-value=5.2 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=27.8
Q ss_pred cccccccCCC--CCceeecCCCCcccccccCCCC
Q 005824 510 KHCHACARPA--DGFVYHCEEKGRNLHPCCFNLP 541 (675)
Q Consensus 510 ~~C~~C~~~~--~g~~Y~C~~C~f~lH~~Ca~lp 541 (675)
..|..||+++ .+-.-.|..|+=.-|..|..--
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 5699999998 7778999999999999998543
No 238
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=59.83 E-value=2.3 Score=28.29 Aligned_cols=23 Identities=13% Similarity=0.459 Sum_probs=14.6
Q ss_pred ceeecCCCCcccccccCCCCcce
Q 005824 522 FVYHCEEKGRNLHPCCFNLPRKL 544 (675)
Q Consensus 522 ~~Y~C~~C~f~lH~~Ca~lp~~i 544 (675)
....|..|+..+|..|...+...
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~ 25 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVP 25 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--
T ss_pred ceEEeCCCCCcCChhhCCcccCC
Confidence 45789999999999999887643
No 239
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=59.13 E-value=7.9 Score=32.82 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=23.4
Q ss_pred cccccccccccccCCCCCCCCeEEeecCCCeeEeccchHH
Q 005824 559 SQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTE 598 (675)
Q Consensus 559 ~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~ 598 (675)
...|.+|++... ..++++. +|+..+|..|+++
T Consensus 78 ~~~C~vC~k~l~-------~~~f~~~-p~~~v~H~~C~~r 109 (109)
T PF10367_consen 78 STKCSVCGKPLG-------NSVFVVF-PCGHVVHYSCIKR 109 (109)
T ss_pred CCCccCcCCcCC-------CceEEEe-CCCeEEecccccC
Confidence 357999999863 2466665 4668899999863
No 240
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=58.94 E-value=2.5 Score=45.77 Aligned_cols=43 Identities=30% Similarity=0.654 Sum_probs=36.1
Q ss_pred cccceecccccCccCCcccCCCCCCc---ccccCCCceeccccccc
Q 005824 432 AHDLQLKNHKILSECNGCKRPAFGLM---YRCELCNFNLHIPCMFI 474 (675)
Q Consensus 432 ~H~l~l~~~~~~~~C~~C~~~~~g~~---Y~C~~C~f~lH~~Ca~~ 474 (675)
.|.++..+.+.+..|+.|.....|.+ |+|+.|.-..|+.|...
T Consensus 523 ~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~ 568 (865)
T KOG2996|consen 523 NHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGR 568 (865)
T ss_pred CcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccC
Confidence 47777777788889999998876655 99999999999999754
No 241
>PRK07058 acetate kinase; Provisional
Probab=58.28 E-value=49 Score=35.25 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCc-ChHHHHHHHHHhcC
Q 005824 309 LNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (675)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~~ 359 (675)
+++-.+.+|.+.|-...... ..+|.|+++||-+ .++.+++.|.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44445555555555554443 3589999999999 99999999998874
No 242
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=58.00 E-value=1e+02 Score=32.06 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=50.7
Q ss_pred HHcCCceeEeeChhHHHHHHhccccC----------CCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEE-cCCCCCcH-
Q 005824 167 AMAGLNVLKIISEPTAAAIAYGLHRK----------ASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKAT-AGDTHLGG- 234 (675)
Q Consensus 167 ~~Agl~~v~li~Ep~Aaa~~~~~~~~----------~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~-~~~~~~GG- 234 (675)
+..|++.+.++++=+|.|++...-.+ ...+...+|+-.|.|-=-..++.. ++...++.+ .+...+.-
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~-~~~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPD-GDGYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEE-TTEEEEEEE-GGGSB---S
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEec-CCceEeCCCccccccCCCC
Confidence 34588899999999999988632111 125678899999977544444554 444445555 34344433
Q ss_pred HHHHHHHHHHHHHHH
Q 005824 235 EDFDNRMVNHFIQEF 249 (675)
Q Consensus 235 ~~id~~i~~~l~~~~ 249 (675)
.+.+.+|.+++.+++
T Consensus 167 ~~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 167 TDEEAELLRFLRRRY 181 (316)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc
Confidence 566778888887776
No 243
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=57.93 E-value=32 Score=34.32 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=33.3
Q ss_pred CCccEEEEecCCcChHHH----HHHHHHhcC----CCccccc--CCchhhHHhHHHHHHHHHcC
Q 005824 333 SRVDDVVIVGGSARIPKV----QQLLQEFFN----GKRLCQN--INPDEAVAYGAAVQAAVLSG 386 (675)
Q Consensus 333 ~~i~~VvLvGG~s~~p~l----~~~l~~~~~----~~~v~~~--~~p~~ava~Gaa~~a~~l~~ 386 (675)
...+.|+|+|-++++|-+ ++.|++.|. ++.+... .--..-.|.|||+.|.-+.|
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 445789999999997655 455554442 2233221 11223478899988877666
No 244
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=57.19 E-value=38 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=26.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNV 173 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~ 173 (675)
.-.++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 66788999999999999999999999865
No 245
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=57.02 E-value=16 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCc---eeEeeChhHHHHHHhcc
Q 005824 159 RQATKDAGAMAGLN---VLKIISEPTAAAIAYGL 189 (675)
Q Consensus 159 r~~l~~a~~~Agl~---~v~li~Ep~Aaa~~~~~ 189 (675)
.+.|.+|.++.|+. .+.++++..|..++...
T Consensus 171 ~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 171 VELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp HHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred chhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 57888999998885 57789999998876543
No 246
>PRK13329 pantothenate kinase; Reviewed
Probab=56.53 E-value=2.2e+02 Score=28.45 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCCCcccccCCchhhHHhHHHHHHH
Q 005824 303 RARFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNGKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 303 r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
++..+.+...++..+...|+..+++.......--.|+++||.+. .|...++ .++. .+|+ -|-.|....+.
T Consensus 176 ~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGda~--~l~~~l~-----~~~~--~~~~-LvL~GL~~i~~ 245 (249)
T PRK13329 176 TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAEPECLLTGGAAW--KLAPSLT-----VPFE--LVDN-LVLDGLLVIAA 245 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhcC-----CCCE--ECCC-cHHHHHHHHHh
Confidence 34445555555555555555555442111111127999999975 3443332 2222 2333 46677766654
No 247
>PLN02596 hexokinase-like
Probab=56.08 E-value=1.4e+02 Score=33.14 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEE
Q 005824 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVS 212 (675)
Q Consensus 156 ~~~r~~l~~a~~~Agl--~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvs 212 (675)
..-.+.|.+|.++-|+ +.+.++++..+..++.....+ +..+=+=+|.||=-..
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~----~~~iG~I~GTGtNacY 259 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK----DTVAAVTLGMGTNAAY 259 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC----CeEEEEEEecccceEE
Confidence 4446778888887786 568899999998877665432 2222222566654333
No 248
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=56.03 E-value=4.3 Score=39.75 Aligned_cols=86 Identities=21% Similarity=0.461 Sum_probs=54.4
Q ss_pred cccccccCCC-----CCc---eeecCCCCcccccccCCCCcceeeCCeeeEecCCCCcccccccccccccCCCCCCCCeE
Q 005824 510 KHCHACARPA-----DGF---VYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCESKRLQGSASDNWGWS 581 (675)
Q Consensus 510 ~~C~~C~~~~-----~g~---~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~ 581 (675)
-+||-|-.+. .|. .-.|++|+-.=||.|......+...-.. ..|.|..|+-+...|. ++...-.
T Consensus 225 ~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~-------yrwqcieck~csicgt-senddql 296 (336)
T KOG1244|consen 225 PYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKT-------YRWQCIECKYCSICGT-SENDDQL 296 (336)
T ss_pred cccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHh-------heeeeeecceeccccC-cCCCcee
Confidence 4588884332 222 4679999999999999887655443211 2233333333322221 2445667
Q ss_pred EeecCCCeeEeccchHHHHHHh
Q 005824 582 YVSKCNNYHCHAFCSTEMLLEN 603 (675)
Q Consensus 582 Y~c~~c~~~lH~~C~~~~~~~~ 603 (675)
-.|..|+--+|+-|..--+.+.
T Consensus 297 lfcddcdrgyhmyclsppm~ep 318 (336)
T KOG1244|consen 297 LFCDDCDRGYHMYCLSPPMVEP 318 (336)
T ss_pred EeecccCCceeeEecCCCcCCC
Confidence 7899999999999998766654
No 249
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=56.01 E-value=37 Score=35.89 Aligned_cols=67 Identities=19% Similarity=0.076 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHHHHHHHhcCC---CcccccCCchhhHHhHHHH
Q 005824 310 NMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQQLLQEFFNG---KRLCQNINPDEAVAYGAAV 379 (675)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~---~~v~~~~~p~~ava~Gaa~ 379 (675)
++.....+...|-..+...+ .+++.|+|.||-+..+.+.+.|.+.+.- +.+.-..+-.+|.|.||..
T Consensus 272 ~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 272 LDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 33344444444444333321 2578999999999998888999887732 2333333445677888764
No 250
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=54.40 E-value=12 Score=33.55 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=18.8
Q ss_pred CcEEEEecccccEEEEEEECCe
Q 005824 7 VLGIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 7 ~~viGID~GTt~s~va~~~~g~ 28 (675)
|.++|||+||-.+++|+.+...
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4899999999999999986543
No 251
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=54.17 E-value=15 Score=41.79 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=32.6
Q ss_pred CcccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHHHHHh
Q 005824 558 LSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEMLLEN 603 (675)
Q Consensus 558 ~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~~~~~ 603 (675)
.+++|.+|.+.... -.+-.-|+|-+|+-++|..|..++.-+.
T Consensus 117 vsskc~vc~k~cgs----~~rlqd~rclwc~~~vh~~c~~~~~~~c 158 (1099)
T KOG1170|consen 117 VSSKCSVCEKPCGS----VLRLQDYRCLWCGCCVHDTCIGNLARAC 158 (1099)
T ss_pred cccccccccccccc----ccccCCcceEeeccEeehhhhhhHHhhc
Confidence 56799999985421 2234568999999999999999987765
No 252
>PRK10331 L-fuculokinase; Provisional
Probab=53.98 E-value=10 Score=41.90 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=17.5
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++++++++.+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 78999999999999998533
No 253
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=53.89 E-value=4.7 Score=43.34 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=40.1
Q ss_pred CccEEEEecCCcChHHHHHHHHHhcCC-----------Ccccc---cCCchhhHHhHHHHHHHHHc
Q 005824 334 RVDDVVIVGGSARIPKVQQLLQEFFNG-----------KRLCQ---NINPDEAVAYGAAVQAAVLS 385 (675)
Q Consensus 334 ~i~~VvLvGG~s~~p~l~~~l~~~~~~-----------~~v~~---~~~p~~ava~Gaa~~a~~l~ 385 (675)
-...|.++||+...|++.+.|+++.-+ +.|+. ..||...+-+|||+++..-.
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 357899999999999999999987621 12222 24899999999999997543
No 254
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=53.76 E-value=13 Score=33.41 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.3
Q ss_pred CcEEEEecccccEEEEEEECC
Q 005824 7 VLGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 7 ~~viGID~GTt~s~va~~~~g 27 (675)
|.++|||+|+..+++|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 479999999999999988654
No 255
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=53.54 E-value=8.5 Score=43.20 Aligned_cols=31 Identities=26% Similarity=0.803 Sum_probs=25.5
Q ss_pred cccccccCC----CCCceeecCCCCcccccccCCCC
Q 005824 510 KHCHACARP----ADGFVYHCEEKGRNLHPCCFNLP 541 (675)
Q Consensus 510 ~~C~~C~~~----~~g~~Y~C~~C~f~lH~~Ca~lp 541 (675)
-.||.|+-+ ...++| |..|+.-+|..|..+-
T Consensus 272 viCDvCrspD~e~~neMVf-Cd~Cn~cVHqaCyGIl 306 (893)
T KOG0954|consen 272 VICDVCRSPDSEEANEMVF-CDKCNICVHQACYGIL 306 (893)
T ss_pred ceeceecCCCccccceeEE-eccchhHHHHhhhcee
Confidence 569999876 455666 9999999999999764
No 256
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=53.45 E-value=7.9 Score=28.73 Aligned_cols=19 Identities=26% Similarity=0.749 Sum_probs=13.3
Q ss_pred cccccCCCCCceeecCCCCcc
Q 005824 512 CHACARPADGFVYHCEEKGRN 532 (675)
Q Consensus 512 C~~C~~~~~g~~Y~C~~C~f~ 532 (675)
|.-|++ .+..|.|..|+|.
T Consensus 39 C~~CRk--~~~~Y~CP~CGF~ 57 (59)
T PRK14890 39 CEKCRK--QSNPYTCPKCGFE 57 (59)
T ss_pred chhHHh--cCCceECCCCCCc
Confidence 555655 3458899999884
No 257
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.27 E-value=17 Score=31.02 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=44.0
Q ss_pred cccccccCCCCCceeecCCCCcccccccCCCCcceee--C---CeeeEecCCCCcccccccccccccCCCC----CCCCe
Q 005824 510 KHCHACARPADGFVYHCEEKGRNLHPCCFNLPRKLAI--G---SVEFVLSDKELSQECIWCESKRLQGSAS----DNWGW 580 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~--~---~h~~~l~~~~~~~~C~~C~~~~~~~~~~----~~~~w 580 (675)
+.|.-|+-.+-.+.-.|..|++.|=.. ..|.+...| + -++..+.....+..|-.|.+.....+.. -...-
T Consensus 2 Y~CPrC~skvC~LP~~CpiCgLtLVss-~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~ 80 (112)
T TIGR00622 2 YFCPQCRAKVCELPVECPICGLTLILS-THLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSH 80 (112)
T ss_pred ccCCCCCCCccCCCCcCCcCCCEEecc-chHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccccccccc
Confidence 457778777767777888888766300 012222111 0 0011111122234699998864322100 00234
Q ss_pred EEeecCCCeeEeccchH
Q 005824 581 SYVSKCNNYHCHAFCST 597 (675)
Q Consensus 581 ~Y~c~~c~~~lH~~C~~ 597 (675)
.|+|..|.-.+...|-.
T Consensus 81 ~y~C~~C~~~FC~dCD~ 97 (112)
T TIGR00622 81 RYVCAVCKNVFCVDCDV 97 (112)
T ss_pred ceeCCCCCCccccccch
Confidence 78887776666666643
No 258
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.19 E-value=97 Score=30.80 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=45.5
Q ss_pred eEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHH
Q 005824 174 LKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQE 248 (675)
Q Consensus 174 v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~ 248 (675)
..+++.-.||+.....+.. ....+|||+|-|.+..+++.-+ .+.-+....+..+.-..|-..|.++...+
T Consensus 207 av~mDskfaav~gal~dpa---a~palvVd~GngHttaalvded--RI~gv~EHHT~~Lspekled~I~rf~~Ge 276 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA---ADPALVVDYGNGHTTAALVDED--RIVGVYEHHTIRLSPEKLEDQIIRFVEGE 276 (342)
T ss_pred EEEEcchhHhhhhcccCcc---cCceEEEEccCCceEEEEecCC--eEEEEeecccccCCHHHHHHHHHHHHhcc
Confidence 4566666676666665543 3588999999999988887643 44434444445666666666666655443
No 259
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=52.98 E-value=5 Score=40.66 Aligned_cols=34 Identities=32% Similarity=0.825 Sum_probs=27.5
Q ss_pred ccCccCCcccCC-CCCCcccccCC-Cceeccccccc
Q 005824 441 KILSECNGCKRP-AFGLMYRCELC-NFNLHIPCMFI 474 (675)
Q Consensus 441 ~~~~~C~~C~~~-~~g~~Y~C~~C-~f~lH~~Ca~~ 474 (675)
.-+..|+.|.-. .-|.+|+|..| |+.|...|.-.
T Consensus 238 ~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 238 FHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred CCCccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 345679999655 56888999999 89999999643
No 260
>PRK13331 pantothenate kinase; Reviewed
Probab=52.81 E-value=19 Score=35.90 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=22.5
Q ss_pred CCcCCCCcEEEEecccccEEEEEEECCe
Q 005824 1 MARKEGVLGIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 1 M~~~~~~~viGID~GTt~s~va~~~~g~ 28 (675)
|+....+-++.||.|+|+++++++++++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 4444456889999999999999998654
No 261
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=52.45 E-value=7.8 Score=27.25 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=26.5
Q ss_pred ccCCcccCCCCCCcccccCC-Cceeccccccc
Q 005824 444 SECNGCKRPAFGLMYRCELC-NFNLHIPCMFI 474 (675)
Q Consensus 444 ~~C~~C~~~~~g~~Y~C~~C-~f~lH~~Ca~~ 474 (675)
+.|+.|+......+|+|..+ +++|...|...
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhC
Confidence 46999999998889999877 69999999654
No 262
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=51.82 E-value=1.2e+02 Score=33.12 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCc---eeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEEEEEEEe
Q 005824 152 AYFTDSQRQATKDAGAMAGLN---VLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDVSLLTIG 217 (675)
Q Consensus 152 ~~~~~~~r~~l~~a~~~Agl~---~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dvsv~~~~ 217 (675)
......-.+.|.+|+++-|+. .+.++++..+..++.....+ ++++=+=+|.||--..+.+..
T Consensus 187 ~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~----~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 187 DCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP----NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred hhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC----CcEEEEEECCCccceeeeecc
Confidence 333445578899999999885 67889999998876655433 555666678887666555544
No 263
>PRK04123 ribulokinase; Provisional
Probab=51.82 E-value=14 Score=41.72 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=17.0
Q ss_pred cEEEEecccccEEEEEEE
Q 005824 8 LGIGIDLGTTYSCVGVWQ 25 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~ 25 (675)
.++|||+|||++++++++
T Consensus 4 ~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEEecCCCceEEEEEE
Confidence 799999999999999987
No 264
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=51.60 E-value=4.1 Score=43.33 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=54.8
Q ss_pred ccCccCCcccCCCCCCcccccCCC------------ceecccccccCCcCccccCCCCCcceEECCCCCCCCCCcccccc
Q 005824 441 KILSECNGCKRPAFGLMYRCELCN------------FNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDC 508 (675)
Q Consensus 441 ~~~~~C~~C~~~~~g~~Y~C~~C~------------f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~ 508 (675)
..+.+|.+|.--.+- -+|+.|- =-+|..||..-+... .-..|.-+..++.. .. +..++
T Consensus 168 tepWfCeaC~~Gvs~--P~CElCPn~~GifKetDigrWvH~iCALYvpGVa-fg~~~~l~~Vtl~e-m~--ysk~G---- 237 (707)
T KOG0957|consen 168 TEPWFCEACLYGVSL--PHCELCPNRFGIFKETDIGRWVHAICALYVPGVA-FGQTHTLCGVTLEE-MD--YSKFG---- 237 (707)
T ss_pred CCchhhhhHhcCCCC--CccccCCCcCCcccccchhhHHHHHHHhhcCccc-cccccccccccHHH-hh--hhhhc----
Confidence 367889999743322 7888882 127999998753211 11112222222221 11 11111
Q ss_pred ccccccccCCC---CCceeecC--CCCcccccccCCCCcce
Q 005824 509 NKHCHACARPA---DGFVYHCE--EKGRNLHPCCFNLPRKL 544 (675)
Q Consensus 509 ~~~C~~C~~~~---~g~~Y~C~--~C~f~lH~~Ca~lp~~i 544 (675)
.+.|.+|.... .|..-.|. -|.-++|.-||..-.-+
T Consensus 238 ak~Cs~Ced~~fARtGvci~CdaGMCk~YfHVTCAQk~GlL 278 (707)
T KOG0957|consen 238 AKTCSACEDKIFARTGVCIRCDAGMCKEYFHVTCAQKLGLL 278 (707)
T ss_pred cchhccccchhhhhcceeeeccchhhhhhhhhhHHhhhcce
Confidence 27799999876 66666665 46789999999765444
No 265
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=51.46 E-value=13 Score=41.41 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=17.6
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++++++++.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 68999999999999998543
No 266
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.11 E-value=4.9 Score=40.88 Aligned_cols=43 Identities=30% Similarity=0.576 Sum_probs=34.2
Q ss_pred cccceecccccCccCCcccCCCCCC---cccccCCCceeccccccc
Q 005824 432 AHDLQLKNHKILSECNGCKRPAFGL---MYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 432 ~H~l~l~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~ 474 (675)
.|.++-+.....-.|-.|...+||. -|+|-.|..-+|+.|-.+
T Consensus 130 gh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~ 175 (593)
T KOG0695|consen 130 GHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGL 175 (593)
T ss_pred Ccchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhccc
Confidence 4666655555667799999998873 399999999999999655
No 267
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=51.10 E-value=8.6 Score=40.55 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=37.7
Q ss_pred cccccccCCCCCce-eecCCCC-cccccccCCCCccee-e-CCeeeEecCC
Q 005824 510 KHCHACARPADGFV-YHCEEKG-RNLHPCCFNLPRKLA-I-GSVEFVLSDK 556 (675)
Q Consensus 510 ~~C~~C~~~~~g~~-Y~C~~C~-f~lH~~Ca~lp~~i~-~-~~h~~~l~~~ 556 (675)
+.|+.|..++.+.. .+|.+|. |||+..|..--..+. | .+|+..+...
T Consensus 15 y~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 15 YNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCccHhHHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 67999999998887 9999998 999999998765553 2 4777666544
No 268
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=50.69 E-value=14 Score=41.48 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.8
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++++++++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 79999999999999998543
No 269
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=50.51 E-value=14 Score=40.85 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=17.5
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++++++++.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 68999999999999998643
No 270
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=50.24 E-value=9.7 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.469 Sum_probs=17.6
Q ss_pred ccccccCCCCCceeecCCCCccc
Q 005824 511 HCHACARPADGFVYHCEEKGRNL 533 (675)
Q Consensus 511 ~C~~C~~~~~g~~Y~C~~C~f~l 533 (675)
.|-.|+..+.-..=.|+.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48888888766666788888764
No 271
>PRK15027 xylulokinase; Provisional
Probab=48.30 E-value=15 Score=40.84 Aligned_cols=19 Identities=42% Similarity=0.420 Sum_probs=16.6
Q ss_pred EEEEecccccEEEEEEECC
Q 005824 9 GIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g 27 (675)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 6999999999999988543
No 272
>PHA00626 hypothetical protein
Probab=47.99 E-value=14 Score=26.93 Aligned_cols=22 Identities=18% Similarity=0.039 Sum_probs=14.8
Q ss_pred cccccCCCCCceeecCCCCccccc
Q 005824 512 CHACARPADGFVYHCEEKGRNLHP 535 (675)
Q Consensus 512 C~~C~~~~~g~~Y~C~~C~f~lH~ 535 (675)
|..|.+.. -.|.|..|+|..-.
T Consensus 14 cg~cr~~s--nrYkCkdCGY~ft~ 35 (59)
T PHA00626 14 EKTMRGWS--DDYVCCDCGYNDSK 35 (59)
T ss_pred eceecccC--cceEcCCCCCeech
Confidence 55555433 47999999987543
No 273
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=47.92 E-value=9.6 Score=24.46 Aligned_cols=23 Identities=26% Similarity=0.836 Sum_probs=14.6
Q ss_pred ccccccccCCC----CCceeecCCCCc
Q 005824 509 NKHCHACARPA----DGFVYHCEEKGR 531 (675)
Q Consensus 509 ~~~C~~C~~~~----~g~~Y~C~~C~f 531 (675)
.++|..||-+. .||.-+|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 37799999854 789999999985
No 274
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=47.89 E-value=7.4 Score=38.98 Aligned_cols=74 Identities=12% Similarity=0.232 Sum_probs=44.0
Q ss_pred CccCCcccCCCCC-CcccccCC-CceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccc---cccccccC
Q 005824 443 LSECNGCKRPAFG-LMYRCELC-NFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCN---KHCHACAR 517 (675)
Q Consensus 443 ~~~C~~C~~~~~g-~~Y~C~~C-~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~C~~C~~ 517 (675)
.+.|+-|...... .+-+|.+| +|+|+..|.......-..||.|+- ...-.-+.|-....|..+.-- .-|+.||.
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~Y-RiietnsypI~~e~WgadEEllli~~~~TlGl 83 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGY-RIIETNSYPIGEEGWGADEELLLIECLDTLGL 83 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCe-eEeeccCccccCCCcCchHHHHHHHHHHhcCC
Confidence 4569999888654 56899999 999999997654334445666653 333323344333333211100 33777775
No 275
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=47.62 E-value=4.5 Score=45.16 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=16.7
Q ss_pred CCCcceEECCCCCCCCCCccccccccccccccCCC
Q 005824 485 FGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPA 519 (675)
Q Consensus 485 ~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~~ 519 (675)
.|+|+|.-+.+.....+. |.||-|++..
T Consensus 933 KHKHHLtEHkRLHSGEKP-------fQCdKClKRF 960 (1007)
T KOG3623|consen 933 KHKHHLTEHKRLHSGEKP-------FQCDKCLKRF 960 (1007)
T ss_pred hhhhhhhhhhhhccCCCc-------chhhhhhhhc
Confidence 344555555555444332 7799999864
No 276
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=47.55 E-value=16 Score=40.91 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.1
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++++++++.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred CEEEEeccccceEEEEEcCC
Confidence 37999999999999998543
No 277
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=47.43 E-value=17 Score=40.88 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=16.9
Q ss_pred cEEEEecccccEEEEEEE
Q 005824 8 LGIGIDLGTTYSCVGVWQ 25 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~ 25 (675)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999987
No 278
>PLN02295 glycerol kinase
Probab=46.51 E-value=17 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.6
Q ss_pred cEEEEecccccEEEEEEEC
Q 005824 8 LGIGIDLGTTYSCVGVWQH 26 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~ 26 (675)
.++|||+|||++++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 3799999999999999853
No 279
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=46.47 E-value=17 Score=40.41 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=17.4
Q ss_pred cEEEEecccccEEEEEEECC
Q 005824 8 LGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g 27 (675)
.++|||+|||++++++++.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 68999999999999988533
No 280
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.30 E-value=11 Score=42.56 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=28.2
Q ss_pred ccCccCCcccCCCC-CCcccccCCCce-ecccccccC
Q 005824 441 KILSECNGCKRPAF-GLMYRCELCNFN-LHIPCMFID 475 (675)
Q Consensus 441 ~~~~~C~~C~~~~~-g~~Y~C~~C~f~-lH~~Ca~~~ 475 (675)
.+...|..|..+-- ...-.|..|||- .|..|.+.+
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPd 249 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPD 249 (1134)
T ss_pred cccccceeeccCChHHhheeecccccceeeccccCcc
Confidence 34567999998864 456999999999 999997654
No 281
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=45.81 E-value=9.6 Score=22.39 Aligned_cols=10 Identities=30% Similarity=1.221 Sum_probs=6.6
Q ss_pred ccccCCCcee
Q 005824 458 YRCELCNFNL 467 (675)
Q Consensus 458 Y~C~~C~f~l 467 (675)
|+|..|+|.-
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 7899999865
No 282
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=44.68 E-value=58 Score=35.14 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCcChHHHH
Q 005824 307 EELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSARIPKVQ 351 (675)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~ 351 (675)
+++-+.+++.+.+++.+.+.+++...++|..++++|-......+.
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLll 100 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLL 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHc
Confidence 344455667778888888899899999999999999766554443
No 283
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=44.40 E-value=19 Score=40.61 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=16.2
Q ss_pred EEEEecccccEEEEEEEC
Q 005824 9 GIGIDLGTTYSCVGVWQH 26 (675)
Q Consensus 9 viGID~GTt~s~va~~~~ 26 (675)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 689999999999999853
No 285
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=44.19 E-value=86 Score=23.58 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=26.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~v 174 (675)
.-.++.|+.++..+|..+.+.|+..||...
T Consensus 17 ~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 17 IRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred cceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 567889999999999999999999998653
No 286
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=43.87 E-value=20 Score=23.07 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=20.4
Q ss_pred cccccccccccCCCCCCCCeEEeecCCCeeEecc
Q 005824 561 ECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAF 594 (675)
Q Consensus 561 ~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~ 594 (675)
.|.+|.++. +.+.-.|.|..|++.|+..
T Consensus 2 rC~vC~~~k------~rk~T~~~C~~C~v~lC~~ 29 (32)
T PF13842_consen 2 RCKVCSKKK------RRKDTRYMCSKCDVPLCVE 29 (32)
T ss_pred CCeECCcCC------ccceeEEEccCCCCcccCC
Confidence 578888754 2244789999999888764
No 287
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=43.85 E-value=1e+02 Score=33.06 Aligned_cols=29 Identities=38% Similarity=0.765 Sum_probs=23.9
Q ss_pred CCceEEEEEeCCCcEEEEEEEEe-CCEEEE
Q 005824 195 SEKNVLIFDLGGGTFDVSLLTIG-KGIFKV 223 (675)
Q Consensus 195 ~~~~vlvvDiGggT~dvsv~~~~-~~~~~~ 223 (675)
....+|++|+||..+-++.+++. ++.+++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 66789999999999999999997 344433
No 288
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=43.76 E-value=21 Score=33.08 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=17.1
Q ss_pred CcEEEEecccccEEEEEEE
Q 005824 7 VLGIGIDLGTTYSCVGVWQ 25 (675)
Q Consensus 7 ~~viGID~GTt~s~va~~~ 25 (675)
|.++|||-|++++..|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4799999999999999874
No 289
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=42.88 E-value=26 Score=24.96 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=24.6
Q ss_pred CCcccCCC-CCCcccccCCCceecccccccC
Q 005824 446 CNGCKRPA-FGLMYRCELCNFNLHIPCMFID 475 (675)
Q Consensus 446 C~~C~~~~-~g~~Y~C~~C~f~lH~~Ca~~~ 475 (675)
|..|+... .+..-.|+.|+--.|..|..++
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCC
Confidence 77787754 4566999999999999998765
No 290
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=42.38 E-value=11 Score=42.02 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=24.1
Q ss_pred cCCcccCCC-CCCcccccCCCceecccccccC
Q 005824 445 ECNGCKRPA-FGLMYRCELCNFNLHIPCMFID 475 (675)
Q Consensus 445 ~C~~C~~~~-~g~~Y~C~~C~f~lH~~Ca~~~ 475 (675)
.|.+|...+ ...+-.|..||-.+|..|...+
T Consensus 70 vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~ 101 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPP 101 (694)
T ss_pred eeeeccccCCcccccccccccccccccccCCc
Confidence 377777544 5677999999999999997654
No 291
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=42.25 E-value=11 Score=26.10 Aligned_cols=27 Identities=37% Similarity=0.747 Sum_probs=14.5
Q ss_pred CCcccCCCCCCccccc--CCCceecccccc
Q 005824 446 CNGCKRPAFGLMYRCE--LCNFNLHIPCMF 473 (675)
Q Consensus 446 C~~C~~~~~g~~Y~C~--~C~f~lH~~Ca~ 473 (675)
|..|++...- -.+|+ .|+.-||..|+.
T Consensus 1 C~~C~~iv~~-G~~C~~~~C~~r~H~~C~~ 29 (43)
T PF08746_consen 1 CEACKEIVTQ-GQRCSNRDCNVRLHDDCFK 29 (43)
T ss_dssp -TTT-SB-SS-SEE-SS--S--EE-HHHHH
T ss_pred CcccchhHee-eccCCCCccCchHHHHHHH
Confidence 7788877532 28898 699999999974
No 292
>PRK04023 DNA polymerase II large subunit; Validated
Probab=41.88 E-value=18 Score=42.56 Aligned_cols=20 Identities=25% Similarity=0.750 Sum_probs=15.3
Q ss_pred cccccccCCCCCceeecCCCCc
Q 005824 510 KHCHACARPADGFVYHCEEKGR 531 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f 531 (675)
++|..||... +...|..|+=
T Consensus 627 RfCpsCG~~t--~~frCP~CG~ 646 (1121)
T PRK04023 627 RKCPSCGKET--FYRRCPFCGT 646 (1121)
T ss_pred ccCCCCCCcC--CcccCCCCCC
Confidence 7799999874 5668888873
No 293
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=41.62 E-value=70 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=17.4
Q ss_pred ccccccCCC--CCceeecCCCCccccc
Q 005824 511 HCHACARPA--DGFVYHCEEKGRNLHP 535 (675)
Q Consensus 511 ~C~~C~~~~--~g~~Y~C~~C~f~lH~ 535 (675)
+|.-||... .+-.|.|..|++....
T Consensus 2 fC~~Cg~~l~~~~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKNGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCCCeEECcCCCCcccc
Confidence 488888754 3447889999976553
No 294
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.51 E-value=43 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCCCcccccccccccccCCCCCCCCeEEeecCCCeeEecc
Q 005824 555 DKELSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAF 594 (675)
Q Consensus 555 ~~~~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~ 594 (675)
+...|..|..|+..... ......|.|..|++..|..
T Consensus 24 ~~~TSq~C~~CG~~~~~----~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 24 EAYTSQTCPRCGHRNKK----RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CCCCccCccCccccccc----ccccceEEcCCCCCEECcH
Confidence 33456789999987642 2357889999999998876
No 295
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=41.39 E-value=7.7 Score=28.05 Aligned_cols=26 Identities=38% Similarity=0.971 Sum_probs=13.7
Q ss_pred CCcccCCCCC--------CcccccCCCceecccc
Q 005824 446 CNGCKRPAFG--------LMYRCELCNFNLHIPC 471 (675)
Q Consensus 446 C~~C~~~~~g--------~~Y~C~~C~f~lH~~C 471 (675)
|-||..+... .+|+|..|.-.+...|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC 35 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC 35 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc
Confidence 6677666433 4688888877777777
No 296
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.67 E-value=9 Score=43.05 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=28.2
Q ss_pred cccccccC-CCCCceeecCCC-CcccccccCCCCcce
Q 005824 510 KHCHACAR-PADGFVYHCEEK-GRNLHPCCFNLPRKL 544 (675)
Q Consensus 510 ~~C~~C~~-~~~g~~Y~C~~C-~f~lH~~Ca~lp~~i 544 (675)
-.|+.|.+ ++.||.|+|..| ++|++..|..--+.-
T Consensus 604 ~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraa 640 (966)
T KOG4286|consen 604 AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAA 640 (966)
T ss_pred hhcchhhhCccceeeeeehhhcChhHHhhHhhhcccc
Confidence 55999988 789999999988 588988888655433
No 297
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=39.29 E-value=1.8e+02 Score=31.69 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=30.0
Q ss_pred EEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHh
Q 005824 202 FDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKR 251 (675)
Q Consensus 202 vDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~ 251 (675)
+|+|+.+|-++++...+..+...+.......= .++..-|++...++++.
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~~ 49 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLNE 49 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHHH
Confidence 59999999999998877766555554431111 35555534444444443
No 298
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=39.27 E-value=8.2 Score=38.56 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=45.7
Q ss_pred cccccccCCCCCceeecCCCCcccccccCCCCcceeeCCeeeEec--------CCCCcccccccccccccCCCCCC----
Q 005824 510 KHCHACARPADGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLS--------DKELSQECIWCESKRLQGSASDN---- 577 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~--------~~~~~~~C~~C~~~~~~~~~~~~---- 577 (675)
+.|-.|.-.+-.+.-.|+.|++.|-.. ..|.+... |-+.|. ....+.-|-+|.......+.+-.
T Consensus 309 y~CP~CktkVCsLPi~CP~Csl~Lils-thLarSyh---hL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ 384 (421)
T COG5151 309 YECPVCKTKVCSLPISCPICSLQLILS-THLARSYH---HLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDEST 384 (421)
T ss_pred eeCCcccceeecCCccCcchhHHHHHH-HHHHHHHH---hhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccc
Confidence 556666666666666677676543210 11222221 111121 11123359999874433321111
Q ss_pred CCeEEeecCCCeeEeccchHHH
Q 005824 578 WGWSYVSKCNNYHCHAFCSTEM 599 (675)
Q Consensus 578 ~~w~Y~c~~c~~~lH~~C~~~~ 599 (675)
....|+|..|.-.+++.|-.=+
T Consensus 385 ss~rY~Ce~CK~~FC~dCdvfi 406 (421)
T COG5151 385 SSGRYQCELCKSTFCSDCDVFI 406 (421)
T ss_pred cccceechhhhhhhhhhhHHHH
Confidence 2567999999988888886543
No 299
>PLN02669 xylulokinase
Probab=38.84 E-value=29 Score=39.27 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=18.3
Q ss_pred CCcEEEEecccccEEEEEEECC
Q 005824 6 GVLGIGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 6 ~~~viGID~GTt~s~va~~~~g 27 (675)
+..+||||+||+.+|+++++.+
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCC
Confidence 3479999999999999988533
No 300
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=38.27 E-value=2.9e+02 Score=29.50 Aligned_cols=16 Identities=6% Similarity=0.468 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 005824 235 EDFDNRMVNHFIQEFK 250 (675)
Q Consensus 235 ~~id~~i~~~l~~~~~ 250 (675)
+.||+.|.++|.+++.
T Consensus 13 D~iD~~iv~Ll~~R~~ 28 (374)
T PRK11199 13 DEVDKQLLELLAKRLE 28 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999987753
No 301
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=37.34 E-value=13 Score=36.79 Aligned_cols=70 Identities=21% Similarity=0.493 Sum_probs=45.1
Q ss_pred CcccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccccccccccccCCC-CCceeecCCCCcccc
Q 005824 456 LMYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRDCNKHCHACARPA-DGFVYHCEEKGRNLH 534 (675)
Q Consensus 456 ~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~~-~g~~Y~C~~C~f~lH 534 (675)
+.-.|.+|.-.-|..|...++. .. . ..+... |.|-.| +.|..|+++. ..-..-|..|+--.|
T Consensus 278 S~I~C~~C~~~~HP~Ci~M~~e--lv-~-----~~KTY~--------W~C~~C-~lC~IC~~P~~E~E~~FCD~CDRG~H 340 (381)
T KOG1512|consen 278 SWIVCKPCATRPHPYCVAMIPE--LV-G-----QYKTYF--------WKCSSC-ELCRICLGPVIESEHLFCDVCDRGPH 340 (381)
T ss_pred cceeecccccCCCCcchhcCHH--HH-h-----HHhhcc--------hhhccc-HhhhccCCcccchheeccccccCCCC
Confidence 3478889988999999766521 11 0 011111 222222 4599999986 444556999999999
Q ss_pred cccCCCCc
Q 005824 535 PCCFNLPR 542 (675)
Q Consensus 535 ~~Ca~lp~ 542 (675)
--|+.|-.
T Consensus 341 T~CVGL~~ 348 (381)
T KOG1512|consen 341 TLCVGLQD 348 (381)
T ss_pred cccccccc
Confidence 99998753
No 302
>PRK04023 DNA polymerase II large subunit; Validated
Probab=37.20 E-value=32 Score=40.61 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=16.4
Q ss_pred cccccccCCCCCceeecCCCCcccc
Q 005824 510 KHCHACARPADGFVYHCEEKGRNLH 534 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f~lH 534 (675)
++|.-||.... .|.|..|++.+-
T Consensus 652 ~fCP~CG~~~~--~y~CPKCG~El~ 674 (1121)
T PRK04023 652 YRCPRCGIEVE--EDECEKCGREPT 674 (1121)
T ss_pred eeCccccCcCC--CCcCCCCCCCCC
Confidence 45888877654 478888887654
No 303
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=36.99 E-value=27 Score=27.30 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=33.7
Q ss_pred cccCC--CCCceeecCCCCcc-cccccCCCCcceeeCCeeeEecCCCCcccccccccc
Q 005824 514 ACARP--ADGFVYHCEEKGRN-LHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCESK 568 (675)
Q Consensus 514 ~C~~~--~~g~~Y~C~~C~f~-lH~~Ca~lp~~i~~~~h~~~l~~~~~~~~C~~C~~~ 568 (675)
.|+.. ...++|+|..|..+ .+.-|...-..-.|.+|...+........|+ |+..
T Consensus 2 ~C~~~~~~~~~~y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~~~~~~~~~~~CD-CG~~ 58 (71)
T smart00396 2 VCTYKFTGGEVIYRCKTCGLDPTCVLCSDCFRSNCHKGHDYSLKTSRGSGICD-CGDK 58 (71)
T ss_pred CCCCccCCCCEEEECcCCCCCCCEeEChHHCCCCCCCCCCEEEEEecCCEEEC-CCCh
Confidence 45553 35678999999854 2334444445566778887776553335565 7765
No 304
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=35.81 E-value=31 Score=41.81 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=9.4
Q ss_pred EEeHHHHHHHHHHHH
Q 005824 300 VITRARFEELNMDLF 314 (675)
Q Consensus 300 ~itr~~~~~~~~~~~ 314 (675)
.|+.+++..+.+.+.
T Consensus 500 dis~e~~~~L~~~~~ 514 (1337)
T PRK14714 500 DISVEQVRALADAVA 514 (1337)
T ss_pred cCCHHHHHHHHHHHH
Confidence 567777776655444
No 305
>PRK13320 pantothenate kinase; Reviewed
Probab=35.75 E-value=42 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEecccccEEEEEEECCe
Q 005824 9 GIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~ 28 (675)
++.||.|+|+++.+++++++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred EEEEEeCCCcEEEEEEECCE
Confidence 69999999999999998664
No 306
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.72 E-value=14 Score=29.10 Aligned_cols=46 Identities=24% Similarity=0.561 Sum_probs=17.5
Q ss_pred ccccccccCCC----CC-ceeecCCCCcccccccCCCCcceeeCCeeeEecCCCCccccccccc
Q 005824 509 NKHCHACARPA----DG-FVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCES 567 (675)
Q Consensus 509 ~~~C~~C~~~~----~g-~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~~~~~~C~~C~~ 567 (675)
+..|..||..+ .| .+--|.+|+|-+...|--. ..+.....|.-|+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEY-------------Erkeg~q~CpqCkt 59 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEY-------------ERKEGNQVCPQCKT 59 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHH-------------HHHTS-SB-TTT--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHH-------------HhhcCcccccccCC
Confidence 46799999975 33 3556999999887666422 22334456777764
No 307
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=35.55 E-value=15 Score=40.87 Aligned_cols=75 Identities=23% Similarity=0.437 Sum_probs=45.4
Q ss_pred ccccc---CCCCCceeecCCCCcccccccCCCCcceeeCCeeeEecCC---CCcccccccccccccCCCCCCCCeEEeec
Q 005824 512 CHACA---RPADGFVYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDK---ELSQECIWCESKRLQGSASDNWGWSYVSK 585 (675)
Q Consensus 512 C~~C~---~~~~g~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~---~~~~~C~~C~~~~~~~~~~~~~~w~Y~c~ 585 (675)
|-.|+ +...|-.--|+.|+..-|+.|.++=. . |. .|... .....|..|+..+ | ..-+-.|+
T Consensus 21 c~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~--~---~~-~l~~gWrC~~crvCe~c~~~g------D-~~kf~~Ck 87 (694)
T KOG4443|consen 21 CPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWA--Q---HA-VLSGGWRCPSCRVCEACGTTG------D-PKKFLLCK 87 (694)
T ss_pred hhhhccccccccCcchhhhhhcccCCcchhhHHH--h---HH-HhcCCcccCCceeeeeccccC------C-cccccccc
Confidence 44554 34466678899999999999998621 1 10 11111 1223445554322 2 23466899
Q ss_pred CCCeeEeccchHHH
Q 005824 586 CNNYHCHAFCSTEM 599 (675)
Q Consensus 586 ~c~~~lH~~C~~~~ 599 (675)
.|+..+|--|.+-.
T Consensus 88 ~cDvsyh~yc~~P~ 101 (694)
T KOG4443|consen 88 RCDVSYHCYCQKPP 101 (694)
T ss_pred cccccccccccCCc
Confidence 99999998887654
No 308
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=35.37 E-value=58 Score=29.66 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=16.8
Q ss_pred EEEEecccccEEEEEEE--CCeEEEE
Q 005824 9 GIGIDLGTTYSCVGVWQ--HNRVEII 32 (675)
Q Consensus 9 viGID~GTt~s~va~~~--~g~~~~l 32 (675)
|+|||-|++++..|+.+ ++..+.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 69999999999999884 4445444
No 309
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=35.36 E-value=5.1e+02 Score=26.59 Aligned_cols=85 Identities=19% Similarity=0.251 Sum_probs=56.2
Q ss_pred HHHcCCceeEeeChhHHHHHHhcccc----------CCCCCceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCc-H
Q 005824 166 GAMAGLNVLKIISEPTAAAIAYGLHR----------KASSEKNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLG-G 234 (675)
Q Consensus 166 ~~~Agl~~v~li~Ep~Aaa~~~~~~~----------~~~~~~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~G-G 234 (675)
.+..|++.+.++++-+|.|++...-. +...+...+|+--|-|-=-..++....+.+.+-...+...++ .
T Consensus 91 r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~~~w~~lp~EGGHvdf~P~ 170 (320)
T COG0837 91 RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNGGGWIPLPGEGGHVDFAPR 170 (320)
T ss_pred HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecCCeeEeccCCCccccCCCC
Confidence 34558999999999999998763211 112556778877666655556666555533333444544554 5
Q ss_pred HHHHHHHHHHHHHHHH
Q 005824 235 EDFDNRMVNHFIQEFK 250 (675)
Q Consensus 235 ~~id~~i~~~l~~~~~ 250 (675)
+..+-.+.+++.+++.
T Consensus 171 ~~~E~~i~~~l~~~~G 186 (320)
T COG0837 171 SEREFQILEYLRARFG 186 (320)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 7788889999988764
No 310
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=35.32 E-value=50 Score=24.02 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=25.9
Q ss_pred cccccccccccC--CCCCCCCeEE-eecCCCeeEeccchHHHHHHhhhh
Q 005824 561 ECIWCESKRLQG--SASDNWGWSY-VSKCNNYHCHAFCSTEMLLENWKS 606 (675)
Q Consensus 561 ~C~~C~~~~~~~--~~~~~~~w~Y-~c~~c~~~lH~~C~~~~~~~~~~~ 606 (675)
.|..|+.+...- ...+...|.| .|..|+......=-..-+.++|+.
T Consensus 3 PCPfCGg~~~~~~~~~~~~~~~~~~~C~~Cga~~~~~~~~~~Ai~~WN~ 51 (53)
T TIGR03655 3 PCPFCGGADVYLRRGFDPLDLSHYFECSTCGASGPVEEDEAEAIEAWNR 51 (53)
T ss_pred CCCCCCCcceeeEeccCCCCCEEEEECCCCCCCcccccCHHHHHHHHhc
Confidence 377777643200 0123345555 588888876664445556677854
No 311
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=35.27 E-value=23 Score=23.19 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=4.9
Q ss_pred eeecCCCCc
Q 005824 523 VYHCEEKGR 531 (675)
Q Consensus 523 ~Y~C~~C~f 531 (675)
.+.|..|++
T Consensus 22 R~vC~~Cg~ 30 (34)
T PF14803_consen 22 RLVCPACGF 30 (34)
T ss_dssp EEEETTTTE
T ss_pred ceECCCCCC
Confidence 455555553
No 312
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=35.20 E-value=1.1e+02 Score=33.02 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCc-ChHHHHHHHHHhcC
Q 005824 309 LNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (675)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~~ 359 (675)
+++-.+.+|.+.|-....... ..+|.|+++||-+ .++.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344445555555555444431 3589999999999 99999999998874
No 313
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.62 E-value=9.6 Score=42.78 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=54.4
Q ss_pred cccccccCCCC---CceeecCCCCcccccccCCCC--------c-c---------eeeC-CeeeEecCCCCccccccccc
Q 005824 510 KHCHACARPAD---GFVYHCEEKGRNLHPCCFNLP--------R-K---------LAIG-SVEFVLSDKELSQECIWCES 567 (675)
Q Consensus 510 ~~C~~C~~~~~---g~~Y~C~~C~f~lH~~Ca~lp--------~-~---------i~~~-~h~~~l~~~~~~~~C~~C~~ 567 (675)
-.|+-|++=+- .--|+|..|.++.|..|..+- . . +++. .|.+.-........|.-|+.
T Consensus 170 t~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~~~~~~Phrf~~~~~q~ptFc~hCGs 249 (694)
T KOG0694|consen 170 TFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFEFTFRNPHRFVKLNRQRPTFCDHCGS 249 (694)
T ss_pred chhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccccccccccCCCcchhhhccCccHHHhcch
Confidence 34999988443 347999999999999997532 1 0 1111 12221112223347888887
Q ss_pred ccccCCCCCCCCeEEeecCCCeeEeccchHHHHHH
Q 005824 568 KRLQGSASDNWGWSYVSKCNNYHCHAFCSTEMLLE 602 (675)
Q Consensus 568 ~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~~~~ 602 (675)
-.... ..-.-.|..|+...|-+|...++.-
T Consensus 250 ~L~r~-----~qqGlkCs~Cg~n~H~~c~~~va~~ 279 (694)
T KOG0694|consen 250 VLYRL-----RQQGLKCSTCGRNVHNRCVENLAPN 279 (694)
T ss_pred hhhhh-----cccCeeehhhhccccHHHHHhcccC
Confidence 54211 1223478889999999999987543
No 314
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=34.23 E-value=1.5e+02 Score=28.85 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=27.2
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHHHHhc
Q 005824 143 VKNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYG 188 (675)
Q Consensus 143 ~~~~vitvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~ 188 (675)
.+.++| +.|++-...++| +.++++.+.+..-...+|+.++
T Consensus 70 vdaiiI---aCf~DPgl~~~R---e~~~~PviGi~eAsv~~A~~vg 109 (230)
T COG4126 70 VDAIII---ACFSDPGLAAAR---ERAAIPVIGICEASVLAALFVG 109 (230)
T ss_pred CcEEEE---EecCChHHHHHH---HHhCCCceehhHHHHHHHHHhc
Confidence 445666 456665555544 4557889999888888888765
No 315
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=33.76 E-value=30 Score=27.86 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred cceEECCCCCCCCCCccccccccccccccCCCCCceeecCCCCccccc
Q 005824 488 STFKSLPKLPGICSTRDCRDCNKHCHACARPADGFVYHCEEKGRNLHP 535 (675)
Q Consensus 488 ~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~g~~Y~C~~C~f~lH~ 535 (675)
..|.+-.+.|+.... +.|.-|.. +|..|+-.+-|
T Consensus 6 pDLi~CrkQPGi~~G-------~LCEkCDg-------kC~ICDS~VRP 39 (110)
T KOG1705|consen 6 PDLIMCRKQPGIAIG-------RLCEKCDG-------KCVICDSYVRP 39 (110)
T ss_pred CcEEEEecCCCchhh-------hhHHhcCC-------ccccccccccc
Confidence 356666778877654 44555543 35566554443
No 316
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.54 E-value=16 Score=35.61 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=22.2
Q ss_pred cccccccCCC------------CCceeecCCCC-------cccccccCCCC
Q 005824 510 KHCHACARPA------------DGFVYHCEEKG-------RNLHPCCFNLP 541 (675)
Q Consensus 510 ~~C~~C~~~~------------~g~~Y~C~~C~-------f~lH~~Ca~lp 541 (675)
|.|+.||..+ .+-.|.|-+|+ |.-|..|..=.
T Consensus 4 FtCnvCgEsvKKp~vekH~srCrn~~fSCIDC~k~F~~~sYknH~kCITEa 54 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQVEKHMSRCRNAYFSCIDCGKTFERVSYKNHTKCITEA 54 (276)
T ss_pred EehhhhhhhccccchHHHHHhccCCeeEEeecccccccchhhhhhhhcchH
Confidence 7799998854 44456777786 45688887644
No 317
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.52 E-value=37 Score=21.93 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.5
Q ss_pred eecCCCCcccc
Q 005824 524 YHCEEKGRNLH 534 (675)
Q Consensus 524 Y~C~~C~f~lH 534 (675)
|.|..|++...
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 56666665444
No 318
>PLN02902 pantothenate kinase
Probab=32.99 E-value=5.8e+02 Score=30.35 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=32.2
Q ss_pred CCccEEEEecCCcCh-----HHHHHHHHHhc--CCCcccccCCchhhHHhHHHHHHH
Q 005824 333 SRVDDVVIVGGSARI-----PKVQQLLQEFF--NGKRLCQNINPDEAVAYGAAVQAA 382 (675)
Q Consensus 333 ~~i~~VvLvGG~s~~-----p~l~~~l~~~~--~~~~v~~~~~p~~ava~Gaa~~a~ 382 (675)
..++.|+++|.+-+- ..|...+. .| +..+.....+-...-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 567899999987553 33444444 34 235666666777888999986553
No 319
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=32.19 E-value=19 Score=39.95 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=25.4
Q ss_pred cccccccCCCCCceeecCCCCcccccccCCC
Q 005824 510 KHCHACARPADGFVYHCEEKGRNLHPCCFNL 540 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~l 540 (675)
-+|+.|.++..---++|..|+|.+|..|+.-
T Consensus 190 ~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~ 220 (678)
T KOG0193|consen 190 AFCDSCCNKFLFTGFRCQTCGYKFHQSCSPR 220 (678)
T ss_pred hhhhhhcchhhhcccccCCCCCccccccCCC
Confidence 4599888777555678999999999999964
No 320
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=31.92 E-value=2e+02 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=26.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~v 174 (675)
...+..|+.++..+|..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367889999999999999999999998653
No 321
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=31.35 E-value=56 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=23.3
Q ss_pred ccccccccCCC------CCceeecCCCCcccccc
Q 005824 509 NKHCHACARPA------DGFVYHCEEKGRNLHPC 536 (675)
Q Consensus 509 ~~~C~~C~~~~------~g~~Y~C~~C~f~lH~~ 536 (675)
.|.|-.||..+ ....=||+.|=+.+|.+
T Consensus 4 ~F~C~~CG~~V~p~~~g~~~RNHCP~CL~S~Hvd 37 (92)
T PF12647_consen 4 SFTCVHCGLTVSPLAAGSAHRNHCPSCLSSLHVD 37 (92)
T ss_pred ccCccccCCCcccCCCCCCccCcCcccccccccC
Confidence 38899999966 33567999999999988
No 322
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=31.20 E-value=67 Score=35.46 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.9
Q ss_pred cEEEEecccccEEEEEEE
Q 005824 8 LGIGIDLGTTYSCVGVWQ 25 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~ 25 (675)
.++|||.|||.+++++++
T Consensus 7 ~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 7 VVLGIDVGTTSARALVFN 24 (516)
T ss_pred eEEEEEcCCCceEEEEEe
Confidence 889999999999999985
No 323
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=30.89 E-value=2.7e+02 Score=26.90 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.5
Q ss_pred CCceEEEEEeCCCcEEEEEEEEeCC
Q 005824 195 SEKNVLIFDLGGGTFDVSLLTIGKG 219 (675)
Q Consensus 195 ~~~~vlvvDiGggT~dvsv~~~~~~ 219 (675)
....+|++|+||.++-+.++++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 4568999999999999999999876
No 324
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=30.60 E-value=38 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.523 Sum_probs=23.1
Q ss_pred CccCCcccCCCCCCcccccCCCceecccccc
Q 005824 443 LSECNGCKRPAFGLMYRCELCNFNLHIPCMF 473 (675)
Q Consensus 443 ~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~ 473 (675)
...|..|+.++....+.--.|+-.+|..|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3459999999765554444677889999974
No 325
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=30.42 E-value=34 Score=30.36 Aligned_cols=18 Identities=28% Similarity=0.363 Sum_probs=15.3
Q ss_pred EEEecccccEEEEEEECC
Q 005824 10 IGIDLGTTYSCVGVWQHN 27 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g 27 (675)
+|||+|+..+++|+.++.
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 589999999999987543
No 326
>PRK13326 pantothenate kinase; Reviewed
Probab=29.99 E-value=56 Score=32.93 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.5
Q ss_pred cEEEEecccccEEEEEEECCe
Q 005824 8 LGIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 8 ~viGID~GTt~s~va~~~~g~ 28 (675)
.++.||+|+|+++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 568999999999999998764
No 327
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.88 E-value=20 Score=27.74 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=25.8
Q ss_pred ccccccCCC--CCceeecCCCC--cccccccCCCCcceeeCCeeeEec--CCCCcccccccccccc
Q 005824 511 HCHACARPA--DGFVYHCEEKG--RNLHPCCFNLPRKLAIGSVEFVLS--DKELSQECIWCESKRL 570 (675)
Q Consensus 511 ~C~~C~~~~--~g~~Y~C~~C~--f~lH~~Ca~lp~~i~~~~h~~~l~--~~~~~~~C~~C~~~~~ 570 (675)
.|-.|..+. .+-.|||..|+ |.+++.|-.=-. ++... -+.+.+.|.-|+.-.+
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~-------~Le~LkACGAvdYFC~~c~gLiS 61 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQ-------PLEVLKACGAVDYFCNHCHGLIS 61 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-S-------B-EEEEETTEEEEE-TTTT-EE-
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCccc-------HHHHHHHhcccceeeccCCceee
Confidence 377787764 55689999997 655555542222 12211 1224567888877554
No 328
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=29.22 E-value=4.4e+02 Score=29.30 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=41.7
Q ss_pred ceEEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q 005824 197 KNVLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKKKKDISGSPRAVQRLTTACERAKR 276 (675)
Q Consensus 197 ~~vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 276 (675)
..+.++|+|.-++-+.|++...+.+.++.... +.+ ++.+.....-..+++.+.+..+...+.++
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k--------------~~v--rLgegl~~~g~L~~eai~R~~~aL~~f~e 66 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREK--------------RIV--RLGEGLDATGNLSEEAIERALSALKRFAE 66 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhh--------------hhe--ehhcCccccCCcCHHHHHHHHHHHHHHHH
Confidence 45789999999999999886643332222111 110 11111112223467777887777777777
Q ss_pred HccCCCceE
Q 005824 277 TLSSTSQTT 285 (675)
Q Consensus 277 ~ls~~~~~~ 285 (675)
.+.......
T Consensus 67 ~~~~~~~~~ 75 (492)
T COG0248 67 LLDGFGAEE 75 (492)
T ss_pred HHhhCCCCE
Confidence 765544333
No 329
>PF12773 DZR: Double zinc ribbon
Probab=29.14 E-value=62 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=9.6
Q ss_pred cccccccCCCCCceeecCCC
Q 005824 510 KHCHACARPADGFVYHCEEK 529 (675)
Q Consensus 510 ~~C~~C~~~~~g~~Y~C~~C 529 (675)
.+|..||.......-.|..|
T Consensus 30 ~~C~~Cg~~~~~~~~fC~~C 49 (50)
T PF12773_consen 30 KICPNCGAENPPNAKFCPNC 49 (50)
T ss_pred CCCcCCcCCCcCCcCccCcc
Confidence 34555555544333335444
No 330
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=28.71 E-value=40 Score=25.51 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=31.7
Q ss_pred cccccCCCCCceeecCCCCcccccccCCCC--cceee---CCeeeEecCCCCcccccccccc
Q 005824 512 CHACARPADGFVYHCEEKGRNLHPCCFNLP--RKLAI---GSVEFVLSDKELSQECIWCESK 568 (675)
Q Consensus 512 C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~lp--~~i~~---~~h~~~l~~~~~~~~C~~C~~~ 568 (675)
|+.|+.. ..-.|-|..|++..- ..-+ ....| .+|++.+.......+|-.|+..
T Consensus 1 C~~C~~~-~~~lw~CL~Cg~~~C---~~~~~~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~~ 58 (63)
T PF02148_consen 1 CSVCGST-NSNLWLCLTCGYVGC---GRYSNGHALKHYKETGHPLAVSLSTGSIWCYACDDY 58 (63)
T ss_dssp -SSSHTC-SSSEEEETTTS-EEE---TTTSTSHHHHHHHHHT--EEEETTTTCEEETTTTEE
T ss_pred CCCCCCc-CCceEEeCCCCcccc---cCCcCcHHHHhhcccCCeEEEECCCCeEEEcCCCcE
Confidence 6677765 566889999987654 3322 11222 3788888777666778877654
No 331
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.22 E-value=17 Score=35.51 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=12.0
Q ss_pred CeeEeccchHHHHHHhhhh
Q 005824 588 NYHCHAFCSTEMLLENWKS 606 (675)
Q Consensus 588 ~~~lH~~C~~~~~~~~~~~ 606 (675)
+|.-|.+|+++- |.+++
T Consensus 43 sYknH~kCITEa--QKYg~ 59 (276)
T KOG2186|consen 43 SYKNHTKCITEA--QKYGK 59 (276)
T ss_pred hhhhhhhhcchH--HHhhh
Confidence 367799999984 44443
No 332
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=28.22 E-value=46 Score=40.43 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=6.4
Q ss_pred cccccccccc
Q 005824 560 QECIWCESKR 569 (675)
Q Consensus 560 ~~C~~C~~~~ 569 (675)
..|.-|+.+.
T Consensus 710 ~~CP~CGtpl 719 (1337)
T PRK14714 710 VECPRCDVEL 719 (1337)
T ss_pred ccCCCCCCcc
Confidence 4577777654
No 333
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=28.11 E-value=1.5e+02 Score=22.25 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=25.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~v 174 (675)
.-.++.|+.+++.+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 556777999999999999999999998653
No 334
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=28.01 E-value=37 Score=23.73 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=12.4
Q ss_pred cccccccCCC---CCceeecCCCCcc
Q 005824 510 KHCHACARPA---DGFVYHCEEKGRN 532 (675)
Q Consensus 510 ~~C~~C~~~~---~g~~Y~C~~C~f~ 532 (675)
+.|..||... .+..-+|..|++.
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG~r 28 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECGYR 28 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCCce
Confidence 4466666643 2345566666644
No 335
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=27.79 E-value=1.6e+02 Score=21.77 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=23.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNV 173 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~ 173 (675)
.-.++.|+ .+..+|..+.+.|+..|+..
T Consensus 16 ~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 16 RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 44668898 89999999999999998754
No 336
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=27.56 E-value=30 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=19.2
Q ss_pred cccccccCCC---CCceeecCCCCccc
Q 005824 510 KHCHACARPA---DGFVYHCEEKGRNL 533 (675)
Q Consensus 510 ~~C~~C~~~~---~g~~Y~C~~C~f~l 533 (675)
+.|.-|+... .+-+.+|.+|+|.+
T Consensus 21 YiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 21 YICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EEeccccccccccCCCcEehhhcchHH
Confidence 6699998753 67799999999854
No 337
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=27.05 E-value=1.8e+02 Score=31.26 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCccEEEEecCCc-ChHHHHHHHHHhcC
Q 005824 310 NMDLFRKCIKHVDMCLRNGKMDKSRVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (675)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~l~~~l~~~~~ 359 (675)
++-.+.+|.+.|-......+ ..+|.|+++||-+ .++.|++.|.+.+.
T Consensus 306 ~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 306 IKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34444555555554444432 2489999999999 89999999998874
No 338
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=26.96 E-value=31 Score=36.21 Aligned_cols=95 Identities=19% Similarity=0.326 Sum_probs=51.8
Q ss_pred ccCCcccCCCCCCcccccCCCceecccccccCCcCccccCCCCC-cceEECCCCCCCCCCccccccccccccccC-CCCC
Q 005824 444 SECNGCKRPAFGLMYRCELCNFNLHIPCMFIDRKPAAKHEFFGN-STFKSLPKLPGICSTRDCRDCNKHCHACAR-PADG 521 (675)
Q Consensus 444 ~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~C~~C~~-~~~g 521 (675)
..|..|...-....-.|++||.+...-|-.. -||-... ....|++...+.... ....+.=..|-. ++.+
T Consensus 163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~------~hp~rgplakh~l~~~~~grvs~---~~s~r~~~~ct~h~~e~ 233 (699)
T KOG4367|consen 163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLR------CHPPRGPLAKHRLVPPAQGRVSR---RLSPRKVSTCTDHELEN 233 (699)
T ss_pred hhhhhhcCChhhhhhhHhhCceEEechHHhc------cCCCCCchhhcccCCcccCceee---ccchhhhhhccCCCCCC
Confidence 3499997655444578999999999999432 2322111 111122222121111 111244555655 4577
Q ss_pred ceeecCCCCcccccccCCCCcceeeCCee
Q 005824 522 FVYHCEEKGRNLHPCCFNLPRKLAIGSVE 550 (675)
Q Consensus 522 ~~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~ 550 (675)
....|..|...+.-.|. +..+|.+|.
T Consensus 234 ~smyc~~ck~pvc~~cl---ee~khs~he 259 (699)
T KOG4367|consen 234 HSMYCVQCKMPVCYQCL---EEGKHSSHE 259 (699)
T ss_pred ceEEEEecCChHHHHHH---Hhhcccchh
Confidence 77779999887777776 344444444
No 339
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=26.65 E-value=1.4e+02 Score=30.43 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCccEEEE-ecCCcChHHHHHHHHHhcC
Q 005824 315 RKCIKHVDMCLRNGKMDKSRVDDVVI-VGGSARIPKVQQLLQEFFN 359 (675)
Q Consensus 315 ~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~l~~~l~~~~~ 359 (675)
.-+...+++.|++.++++++|+.++. +..+...|.|..+|-+.|+
T Consensus 85 ~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 85 MVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 34578888999999999999998765 5678899999999999993
No 340
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=26.46 E-value=88 Score=23.79 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=31.2
Q ss_pred ccccccccccccCCCCCCCCeEE-eecCCCeeEeccchHHHHHHhhhhhccccCCC
Q 005824 560 QECIWCESKRLQGSASDNWGWSY-VSKCNNYHCHAFCSTEMLLENWKSSEEKSKDS 614 (675)
Q Consensus 560 ~~C~~C~~~~~~~~~~~~~~w~Y-~c~~c~~~lH~~C~~~~~~~~~~~~~~~~~~~ 614 (675)
..|..|+.....-. ...+|.| .|..|+...-..=...-+.++|++.-.++.+|
T Consensus 7 KPCPFCG~~~~~v~--~~~g~~~v~C~~CgA~~~~~~te~~Aie~WN~Ra~~~~~~ 60 (64)
T PRK09710 7 KPCPFCGCPSVTVK--AISGYYRAKCNGCESRTGYGGSEKEALERWNKRTTGNNNG 60 (64)
T ss_pred cCCCCCCCceeEEE--ecCceEEEEcCCCCcCcccccCHHHHHHHHHhhhccCCCC
Confidence 35888886532221 2246765 56667765444444556889998876655433
No 341
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=26.19 E-value=1e+02 Score=27.81 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=17.1
Q ss_pred CcEEEEecccccEEEEEEE
Q 005824 7 VLGIGIDLGTTYSCVGVWQ 25 (675)
Q Consensus 7 ~~viGID~GTt~s~va~~~ 25 (675)
|.+++||.|+-|-..++.+
T Consensus 1 mii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIE 19 (143)
T ss_pred CeEEEEecCCCceeEEEEE
Confidence 5899999999999998885
No 342
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=25.99 E-value=54 Score=23.46 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=15.6
Q ss_pred ccccccCCC--C----CceeecCCCCcccc
Q 005824 511 HCHACARPA--D----GFVYHCEEKGRNLH 534 (675)
Q Consensus 511 ~C~~C~~~~--~----g~~Y~C~~C~f~lH 534 (675)
+|..||... . ...|.|..|+|...
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEE
Confidence 477887743 1 13788998987543
No 343
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=25.63 E-value=99 Score=30.02 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccEEEEe---cCC---cChHHHHHHHHHhcCCCc
Q 005824 311 MDLFRKCIKHVDMCLRNGKMDKSRVDDVVIV---GGS---ARIPKVQQLLQEFFNGKR 362 (675)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLv---GG~---s~~p~l~~~l~~~~~~~~ 362 (675)
...++++.+.|++.++.. +.++.++++ ||+ +..|.|.+.|++.|+++.
T Consensus 104 ~~~~~~~~~~ir~~~e~~----d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~ 157 (216)
T PF00091_consen 104 EEALEEILEQIRKEIEKC----DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKP 157 (216)
T ss_dssp HHHHHHHHHHHHHHHHTS----TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSE
T ss_pred cccccccccccchhhccc----cccccceecccccceeccccccccchhhhccccccc
Confidence 456677788888888765 456777775 443 556999999999997663
No 344
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=25.55 E-value=28 Score=30.93 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=26.2
Q ss_pred ccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHHHHH
Q 005824 560 QECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEMLLE 602 (675)
Q Consensus 560 ~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~~~~ 602 (675)
.+|..|=.-+ -|+|-|.....|+|..-.+.-+-.
T Consensus 28 ~rCQKClq~G---------HWtYECk~kRkYihRpSRT~qLkk 61 (177)
T KOG3116|consen 28 ARCQKCLQAG---------HWTYECKNKRKYIHRPSRTQQLKK 61 (177)
T ss_pred hhHHHHHhhc---------cceeeecCceeeecCccHHHHHHH
Confidence 3688886654 699999999999999877664433
No 345
>PLN02377 3-ketoacyl-CoA synthase
Probab=25.25 E-value=2.1e+02 Score=31.84 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEE-ecCCcChHHHHHHHHHhcCCCc
Q 005824 305 RFEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVI-VGGSARIPKVQQLLQEFFNGKR 362 (675)
Q Consensus 305 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~l~~~l~~~~~~~~ 362 (675)
.++...++..+-+.+.++++|+++++++++|+.|+. +.+....|.+..+|.+.+ |.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~L-Glr 221 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKY-KLR 221 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHh-CCC
Confidence 455556666666788899999999999999999987 344556899999999999 443
No 346
>PF13941 MutL: MutL protein
Probab=24.87 E-value=1.5e+02 Score=32.42 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=30.8
Q ss_pred EEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcH-HHHHHHHHHHH
Q 005824 199 VLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGG-EDFDNRMVNHF 245 (675)
Q Consensus 199 vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG-~~id~~i~~~l 245 (675)
+|++|||+.+|-++++....+..+++.......--. .++..-+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 799999999999999996666666665543222112 25555554443
No 347
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=23.58 E-value=39 Score=22.45 Aligned_cols=22 Identities=36% Similarity=0.948 Sum_probs=14.3
Q ss_pred cccccccCCC----CCceeecCCCCcc
Q 005824 510 KHCHACARPA----DGFVYHCEEKGRN 532 (675)
Q Consensus 510 ~~C~~C~~~~----~g~~Y~C~~C~f~ 532 (675)
..|..|+... .|+.| |..|+..
T Consensus 9 ~~C~~C~~~~~~~~dG~~y-C~~cG~~ 34 (36)
T PF11781_consen 9 EPCPVCGSRWFYSDDGFYY-CDRCGHQ 34 (36)
T ss_pred CcCCCCCCeEeEccCCEEE-hhhCceE
Confidence 3499998742 55444 8888753
No 348
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=23.07 E-value=53 Score=23.35 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=21.9
Q ss_pred eeecCCCCcccccccCCCCcceeeCCeeeEecCCCCccccccccccc
Q 005824 523 VYHCEEKGRNLHPCCFNLPRKLAIGSVEFVLSDKELSQECIWCESKR 569 (675)
Q Consensus 523 ~Y~C~~C~f~lH~~Ca~lp~~i~~~~h~~~l~~~~~~~~C~~C~~~~ 569 (675)
.|+|..|++-.++.=- -|..=.-.+-+|.-.+ ..+.|..|+...
T Consensus 1 ky~C~~CgyvYd~~~G-d~~~~i~pGt~F~~Lp--~~w~CP~C~a~K 44 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEKG-DPENGIPPGTPFEDLP--DDWVCPVCGAPK 44 (47)
T ss_dssp EEEETTTSBEEETTTB-BGGGTB-TT--GGGS---TT-B-TTTSSBG
T ss_pred CcCCCCCCEEEcCCcC-CcccCcCCCCCHHHCC--CCCcCcCCCCcc
Confidence 3899999987775411 1111111344443332 458999998753
No 349
>KOG4349 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=69 Score=27.55 Aligned_cols=36 Identities=17% Similarity=0.409 Sum_probs=30.1
Q ss_pred cccccchhhHHHHHHHHHhhhhhccCchhHHHHHHh
Q 005824 635 NKGRGNKYLMIAKGFFQILVSIFIGDPTTLLASLIL 670 (675)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~i~~~~~g~p~~~~~~~~~ 670 (675)
|+-|.-||.-|.-.++.+|+-+.||-||.+..|+|-
T Consensus 73 RkHkygrF~si~iliMgfi~P~~~Gi~tS~viA~~~ 108 (143)
T KOG4349|consen 73 RKHKYGRFISIPILIMGFIIPFVFGIPTSMVLALAM 108 (143)
T ss_pred hcCccceeeehHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 455666788888899999999999999999877763
No 350
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=22.98 E-value=98 Score=29.80 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=17.1
Q ss_pred EEEEecccccEEEEEEECCeE
Q 005824 9 GIGIDLGTTYSCVGVWQHNRV 29 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~~ 29 (675)
++-||+|+|++++++.+++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987753
No 351
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=22.77 E-value=31 Score=37.87 Aligned_cols=77 Identities=23% Similarity=0.476 Sum_probs=0.0
Q ss_pred ccCccCCcccCCCCCC-------------cccccCCCceecccccccCCcCccccCCCCCcceEECCCCCCCCCCccccc
Q 005824 441 KILSECNGCKRPAFGL-------------MYRCELCNFNLHIPCMFIDRKPAAKHEFFGNSTFKSLPKLPGICSTRDCRD 507 (675)
Q Consensus 441 ~~~~~C~~C~~~~~g~-------------~Y~C~~C~f~lH~~Ca~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~~~~~~ 507 (675)
..+..|.||++.+... .|+|..|.-.||.......-.+.-.-..+. .|
T Consensus 131 ~~ps~cagc~~~lk~gq~llald~qwhv~cfkc~~c~~vL~gey~skdg~pyce~dy~~----~f--------------- 191 (670)
T KOG1044|consen 131 YGPSTCAGCGEELKNGQALLALDKQWHVSCFKCKSCSAVLNGEYMSKDGVPYCEKDYQA----KF--------------- 191 (670)
T ss_pred cCCccccchhhhhhccceeeeeccceeeeeeehhhhcccccceeeccCCCcchhhhhhh----hc---------------
Q ss_pred cccccccccCCCCCceeecCCCCcccccccCC
Q 005824 508 CNKHCHACARPADGFVYHCEEKGRNLHPCCFN 539 (675)
Q Consensus 508 ~~~~C~~C~~~~~g~~Y~C~~C~f~lH~~Ca~ 539 (675)
+..|..|.+-+.|-+.+ .-+...||-||.
T Consensus 192 -gvkc~~c~~fisgkvLq--ag~kh~HPtCAR 220 (670)
T KOG1044|consen 192 -GVKCEECEKFISGKVLQ--AGDKHFHPTCAR 220 (670)
T ss_pred -CeehHHhhhhhhhhhhh--ccCcccCcchhh
No 352
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.76 E-value=75 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=20.7
Q ss_pred CcccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHH
Q 005824 558 LSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEM 599 (675)
Q Consensus 558 ~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~ 599 (675)
....|..|+++.. ...+.++|..|+-.+...|....
T Consensus 8 ~~~~C~~C~~~F~------~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFS------LFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-B------SSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCC------CceeeEccCCCCCEECCchhCCE
Confidence 4467999999862 24678999999999999998654
No 353
>PRK13324 pantothenate kinase; Reviewed
Probab=22.26 E-value=94 Score=31.23 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.4
Q ss_pred EEEEecccccEEEEEEECCe
Q 005824 9 GIGIDLGTTYSCVGVWQHNR 28 (675)
Q Consensus 9 viGID~GTt~s~va~~~~g~ 28 (675)
++.||.|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999997554
No 354
>PRK13321 pantothenate kinase; Reviewed
Probab=21.98 E-value=3.3e+02 Score=27.19 Aligned_cols=46 Identities=13% Similarity=0.374 Sum_probs=26.4
Q ss_pred EEEEEeCCCcEEEEEEEEeCCEEEEEEEcCCCCCcHHHHHHHHHHHH
Q 005824 199 VLIFDLGGGTFDVSLLTIGKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (675)
Q Consensus 199 vlvvDiGggT~dvsv~~~~~~~~~~l~~~~~~~~GG~~id~~i~~~l 245 (675)
++.+|+|++++-++++. ++.............-+...+-..+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~T~~~~~~~~~~~~l~~l~ 47 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLPTDKSRTSDELGILLLSLF 47 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999998 33222222222222334555555555444
No 355
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=21.97 E-value=1.1e+02 Score=28.63 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=0.0
Q ss_pred EEEecccccEEEEEEECC--eEEEEecCCCCcccce
Q 005824 10 IGIDLGTTYSCVGVWQHN--RVEIIANDQGNRTTPS 43 (675)
Q Consensus 10 iGID~GTt~s~va~~~~g--~~~~l~~~~g~~~~PS 43 (675)
||||.|.|+|-+.+..++ .+... +.||
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~-------K~~T 30 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATA-------KVPT 30 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEE-------EeCC
No 356
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=21.76 E-value=30 Score=36.53 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=20.7
Q ss_pred cCccCCcccCCCCC-Cccc------ccCCCceecccccc
Q 005824 442 ILSECNGCKRPAFG-LMYR------CELCNFNLHIPCMF 473 (675)
Q Consensus 442 ~~~~C~~C~~~~~g-~~Y~------C~~C~f~lH~~Ca~ 473 (675)
.-|+|..|...+.| .||. |+.|--+-=+.|..
T Consensus 301 ~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~ 339 (468)
T KOG1701|consen 301 QCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNK 339 (468)
T ss_pred cceehHhhhhhhccccccccCCcccchHHHHHHHHHHhh
Confidence 45779999988776 4453 66665555555543
No 357
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.67 E-value=55 Score=28.88 Aligned_cols=21 Identities=48% Similarity=1.021 Sum_probs=13.8
Q ss_pred cccccccCCC---CCceeecCCCCc
Q 005824 510 KHCHACARPA---DGFVYHCEEKGR 531 (675)
Q Consensus 510 ~~C~~C~~~~---~g~~Y~C~~C~f 531 (675)
..|..||-+. +|-+| |+.|++
T Consensus 29 ~hCp~Cg~PLF~KdG~v~-CPvC~~ 52 (131)
T COG1645 29 KHCPKCGTPLFRKDGEVF-CPVCGY 52 (131)
T ss_pred hhCcccCCcceeeCCeEE-CCCCCc
Confidence 4477777765 55566 777765
No 358
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=21.45 E-value=5.2e+02 Score=29.03 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHcC-CceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEE
Q 005824 143 VKNAVVTVPAYFTDSQRQATKDAGAMAG-LNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDV 211 (675)
Q Consensus 143 ~~~~vitvP~~~~~~~r~~l~~a~~~Ag-l~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dv 211 (675)
-.+.++++|...... |.+++...+ ++.+..-+|..|+.++-+..+.. ..-.++++=.|-|.+..
T Consensus 14 Gv~~vFGvpG~~~~~----l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~t-g~~gv~~~t~GpG~~n~ 78 (535)
T TIGR03394 14 GAQEMFGIPGDFALP----FFKVIEETGILPLHTLSHEPAVGFAADAAARYR-GTLGVAAVTYGAGAFNM 78 (535)
T ss_pred CCCEEEECCCcccHH----HHHHHhhCCCCeEEcccCcchHHHHHhHHHHhh-CCceEEEEecchHHHhh
Confidence 347899999876655 445555666 89999999998876554443331 23456667677776654
No 359
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=21.27 E-value=55 Score=20.98 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=16.0
Q ss_pred cCCcccCCCCC----CcccccCCCce
Q 005824 445 ECNGCKRPAFG----LMYRCELCNFN 466 (675)
Q Consensus 445 ~C~~C~~~~~g----~~Y~C~~C~f~ 466 (675)
.|.+|...+.. ...+|..|+..
T Consensus 3 ~C~~C~t~L~yP~gA~~vrCs~C~~v 28 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASSVRCALCQTV 28 (31)
T ss_pred CcCCCCcEeecCCCCCeEECCCCCeE
Confidence 48888887543 33999999764
No 360
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=21.25 E-value=1.4e+02 Score=30.20 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=44.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeeChhHHHHHHhccccCC----------CCCceEEEEEeCCCcEEE
Q 005824 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLHRKA----------SSEKNVLIFDLGGGTFDV 211 (675)
Q Consensus 145 ~~vitvP~~~~~~~r~~l~~a~~~Agl~~v~li~Ep~Aaa~~~~~~~~~----------~~~~~vlvvDiGggT~dv 211 (675)
++|+|-- ..+.+.++.|.+-+-..|++.-+++-+|+-+|++|+.+... -+++.-|-+=+.+|||..
T Consensus 252 H~VLswt-~~D~N~qk~LNrkllk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNA 327 (403)
T COG2069 252 HVVLSWT-QMDVNMQKTLNRKLLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNA 327 (403)
T ss_pred ceEEEee-ccChHHHHHHHHHHHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcch
Confidence 6676532 23445555666666677899999999999999999876543 145555656666666644
No 361
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.19 E-value=29 Score=35.52 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=39.1
Q ss_pred CCeeeEecCCCCcccccccccccccCCCCCCCCeEEeecCCCeeEeccchHHHHHHhhhhh
Q 005824 547 GSVEFVLSDKELSQECIWCESKRLQGSASDNWGWSYVSKCNNYHCHAFCSTEMLLENWKSS 607 (675)
Q Consensus 547 ~~h~~~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~~lH~~C~~~~~~~~~~~~ 607 (675)
++|.|.-.+-.-...|.+|....- ..-.--|+|-.|...+|.+|-+....+-+++.
T Consensus 129 ngh~fqakr~nrr~~c~ic~d~iw-----glgrqgyrcinckl~vhkkch~~v~~~cg~~~ 184 (593)
T KOG0695|consen 129 NGHLFQAKRFNRRAYCGICSDRIW-----GLGRQGYRCINCKLLVHKKCHGLVPLTCGKHM 184 (593)
T ss_pred cCcchhhhhhccceeeeechhhhh-----hcccccceeecceeehhhhhcccccchhhhhc
Confidence 577776544444457999988641 11233699999999999999888766665543
No 362
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.18 E-value=23 Score=39.21 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=35.9
Q ss_pred cccceecccccCccCCcccCCCCCC---cccccCCCceeccccccc
Q 005824 432 AHDLQLKNHKILSECNGCKRPAFGL---MYRCELCNFNLHIPCMFI 474 (675)
Q Consensus 432 ~H~l~l~~~~~~~~C~~C~~~~~g~---~Y~C~~C~f~lH~~Ca~~ 474 (675)
.|++...+...|..|..|....||. -.+|.+|....|..|-.+
T Consensus 172 phnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~el 217 (1283)
T KOG1011|consen 172 PHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCREL 217 (1283)
T ss_pred CCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHH
Confidence 4777777778899999999888874 399999999999999654
No 363
>PRK07220 DNA topoisomerase I; Validated
Probab=20.90 E-value=81 Score=37.05 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=16.8
Q ss_pred ccccccccccccCCCCCCCCeEEeecCCCe
Q 005824 560 QECIWCESKRLQGSASDNWGWSYVSKCNNY 589 (675)
Q Consensus 560 ~~C~~C~~~~~~~~~~~~~~w~Y~c~~c~~ 589 (675)
..|..|+.......-.+...|+|.|..|+|
T Consensus 636 ~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~~ 665 (740)
T PRK07220 636 KVCEAHGLNHIRIINGGKRPWDLGCPQCNF 665 (740)
T ss_pred CCCCCCCCceEEEEecCCccceeeCCCCCC
Confidence 469999742110000112468999977876
No 364
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=20.81 E-value=33 Score=35.02 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=25.4
Q ss_pred cccccccC-CCCCceeecCCCC-cccccccCCC
Q 005824 510 KHCHACAR-PADGFVYHCEEKG-RNLHPCCFNL 540 (675)
Q Consensus 510 ~~C~~C~~-~~~g~~Y~C~~C~-f~lH~~Ca~l 540 (675)
-.|+.|.- ..-||.|+|..|. +.+.+.|..-
T Consensus 241 v~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 241 VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred ccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 34999976 4699999999996 8899999753
No 365
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=20.77 E-value=3.2e+02 Score=30.70 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=42.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHH-cCCceeEeeChhHHHHHHhccccCCCCCceEEEEEeCCCcEEE
Q 005824 144 KNAVVTVPAYFTDSQRQATKDAGAM-AGLNVLKIISEPTAAAIAYGLHRKASSEKNVLIFDLGGGTFDV 211 (675)
Q Consensus 144 ~~~vitvP~~~~~~~r~~l~~a~~~-Agl~~v~li~Ep~Aaa~~~~~~~~~~~~~~vlvvDiGggT~dv 211 (675)
.+.++++|...... |.+++.. .+++.+...+|..|+.++-+..+-.. ..++++=.|-|.+..
T Consensus 16 v~~vFG~pG~~~~~----l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg--~gv~~~t~GPG~~n~ 78 (539)
T TIGR03393 16 IDHLFGVPGDYNLQ----FLDHVIDSPDICWVGCANELNAAYAADGYARCKG--AAALLTTFGVGELSA 78 (539)
T ss_pred CCEEEECCCCchHH----HHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcC--ceEEEEecCccHHHH
Confidence 47899999865544 4445433 58999999999999887766655432 356666777776543
No 366
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=20.76 E-value=55 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=17.0
Q ss_pred cccccccCCC----CCceeecCCCCccc
Q 005824 510 KHCHACARPA----DGFVYHCEEKGRNL 533 (675)
Q Consensus 510 ~~C~~C~~~~----~g~~Y~C~~C~f~l 533 (675)
+.|.-||+.+ ..-.++|..|++.+
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg~rI 34 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCGSRI 34 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCCcEE
Confidence 5688888865 34467888888754
No 367
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=20.65 E-value=28 Score=35.10 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=35.4
Q ss_pred CCeeeEecCCCCcccccccccccccCCCCCCCCeE-----EeecCCCeeEeccchHHHHHHh
Q 005824 547 GSVEFVLSDKELSQECIWCESKRLQGSASDNWGWS-----YVSKCNNYHCHAFCSTEMLLEN 603 (675)
Q Consensus 547 ~~h~~~l~~~~~~~~C~~C~~~~~~~~~~~~~~w~-----Y~c~~c~~~lH~~C~~~~~~~~ 603 (675)
.+|.|.........||++|+..+ |- -.|..|+|+-|.+|-....++.
T Consensus 50 r~~~~~~~g~~~~~~~~~c~~~~----------~~vl~egL~c~~c~~tch~rcr~lv~ldc 101 (348)
T KOG4239|consen 50 RGHNFYTAGLLLPTWCDKCGDFI----------WGVLREGLLCIHCKFTCHIRCRMLVDLDC 101 (348)
T ss_pred cccccccccccccccchhhhHHH----------HHHHHHHHhhhhcCCccCHHHHhhhhhhh
Confidence 46666665555667999999864 43 3788899999999988877765
No 368
>PLN02854 3-ketoacyl-CoA synthase
Probab=20.57 E-value=2e+02 Score=32.06 Aligned_cols=54 Identities=7% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCccEEEE-ecCCcChHHHHHHHHHhcC
Q 005824 306 FEELNMDLFRKCIKHVDMCLRNGKMDKSRVDDVVI-VGGSARIPKVQQLLQEFFN 359 (675)
Q Consensus 306 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~l~~~l~~~~~ 359 (675)
+++..++.-.-+...++++|+++++++++|+.|++ +.+....|.+..+|.+.++
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 44444444445677888899999999999999987 3455567999999999993
No 369
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.11 E-value=59 Score=19.18 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=9.3
Q ss_pred cccccCCCCCceeecCCCCc
Q 005824 512 CHACARPADGFVYHCEEKGR 531 (675)
Q Consensus 512 C~~C~~~~~g~~Y~C~~C~f 531 (675)
|.-||..+..-.=-|..|+.
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CcccCCCCCCcCcchhhhCC
Confidence 55566554222222655554
No 370
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.05 E-value=1.7e+02 Score=30.96 Aligned_cols=28 Identities=11% Similarity=0.331 Sum_probs=22.3
Q ss_pred EEEEEeCCCcEEEEEEEEeCCEEEEEEE
Q 005824 199 VLIFDLGGGTFDVSLLTIGKGIFKVKAT 226 (675)
Q Consensus 199 vlvvDiGggT~dvsv~~~~~~~~~~l~~ 226 (675)
+||++.|++++.+++++.....++....
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~ 29 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLR 29 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeec
Confidence 7999999999999999877655544333
No 371
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=20.00 E-value=50 Score=36.28 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.9
Q ss_pred EEEecccccEEEEEEEC
Q 005824 10 IGIDLGTTYSCVGVWQH 26 (675)
Q Consensus 10 iGID~GTt~s~va~~~~ 26 (675)
+|||+|||+++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998853
Done!