BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005826
(675 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 356 RFRRDFRNIKWVRVPLVFWDYTATKVLT---------LEYVPGVKINELKALDLQGYNRS 406
RFRR+ +N + P + Y + T +EYV GV + ++ + +G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 407 QIASRAIE--AYLIQIL----KTGFFHADPHPGNLAVDLDEALIYYDFGM 450
RAIE A Q L + G H D P N+ + A+ DFG+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI 162
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 356 RFRRDFRNIKWVRVPLVFWDYTATKVLT---------LEYVPGVKINELKALDLQGYNRS 406
RFRR+ +N + P + Y + T +EYV GV + ++ + +G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 407 QIASRAIE--AYLIQIL----KTGFFHADPHPGNLAVDLDEALIYYDFGM 450
RAIE A Q L + G H D P N+ + A+ DFG+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI 162
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 356 RFRRDFRNIKWVRVPLVFWDYTATKVLT---------LEYVPGVKINELKALDLQGYNRS 406
RFRR+ +N + P + Y + T +EYV GV + ++ + +G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 407 QIASRAIE--AYLIQIL----KTGFFHADPHPGNLAVDLDEALIYYDFGM 450
RAIE A Q L + G H D P N+ + A+ DFG+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI 162
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 356 RFRRDFRNIKWVRVPLVFWDYTATKVLT---------LEYVPGVKINELKALDLQGYNRS 406
RFRR+ +N + P + Y + T +EYV GV + ++ + +G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 407 QIASRAIE--AYLIQIL----KTGFFHADPHPGNLAVDLDEALIYYDFGM 450
RAIE A Q L + G H D P N+ + A+ DFG+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI 162
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 399 DLQGYNRSQIASRAIEAYLIQILK-------TGFFHADPHPGNLAVDLDEALIYYDFGM 450
DLQ + + I+ + Q+LK G H D PGNLAV+ D L DFG+
Sbjct: 132 DLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL 190
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 389 GVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDF 448
G + +L + G +R Q + L I G H D PGNLAV+ D L DF
Sbjct: 113 GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDF 172
Query: 449 GM 450
G+
Sbjct: 173 GL 174
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 377 TATKV-LTLEYVPGVKI-NELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
TA K+ + LEY PG ++ + + + D +++ R I + + + G+ H D P N
Sbjct: 79 TANKIFMVLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPEN 138
Query: 435 LAVDLDEALIYYDFGMMGEIK 455
L D L DFG+ + K
Sbjct: 139 LLFDEYHKLKLIDFGLCAKPK 159
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 356 RFRRDFRNIKWVRVPLVFWDYTATKVLT---------LEYVPGVKINELKALDLQGYNRS 406
RFRR+ +N + P + Y + T +EYV GV + ++ + +G
Sbjct: 58 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 112
Query: 407 QIASRAIE--AYLIQIL----KTGFFHADPHPGNLAVDLDEALIYYDFGM 450
RAIE A Q L + G H D P N+ + A+ DFG+
Sbjct: 113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGI 162
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 356 RFRRDFRNIKWVRVPLVFWDYTATKVLT---------LEYVPGVKINELKALDLQGYNRS 406
RFRR+ +N + P + Y + T +EYV GV + ++ + +G
Sbjct: 75 RFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDI--VHTEG---P 129
Query: 407 QIASRAIE--AYLIQIL----KTGFFHADPHPGNLAVDLDEALIYYDFGM 450
RAIE A Q L + G H D P N+ + A+ DFG+
Sbjct: 130 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGI 179
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 399 DLQGYNRSQIASRAIEAYLIQILK-------TGFFHADPHPGNLAVDLDEALIYYDFGM 450
DLQ + + I+ + Q+LK G H D PGNLAV+ D L DFG+
Sbjct: 114 DLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGL 172
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With
Substrate, Dump
Length = 316
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D +A L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLAVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
Length = 427
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 121 KGKGSNE-LPPVEELKVLPSDESFSWAN----ENYNSWQRIIDV---WSFVLSLQIR--- 169
+GK S+E L +EL LP F A+ NY I+D+ W+ +L + +
Sbjct: 40 RGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGVPVEQVL 99
Query: 170 --------ILFDNAKWAYLGGFSEDKQKNRRRKTASWL 199
I FD W+Y+ G ++ Q + +T W+
Sbjct: 100 AGDASSLNIXFDVISWSYIFGNNDSVQPWSKEETVKWI 137
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 114 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 173
Query: 475 KKVIQR 480
++++R
Sbjct: 174 PELLKR 179
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 116 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 175
Query: 475 KKVIQR 480
++++R
Sbjct: 176 PELLKR 181
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 404 NRSQIASRAIEAYLIQILKTGFFHADPH--------PGNLAVDLDEALIYYDFGMMG--- 452
N++ + I+ YL Q+L+ G H H P NL ++ D AL DFG+
Sbjct: 112 NKTGLQDSQIKIYLYQLLR-GVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFG 170
Query: 453 -EIKSFTRERLLDLFY 467
++S+T E ++ L+Y
Sbjct: 171 IPVRSYTHE-VVTLWY 185
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
A ++ + G H D P NL +D + L DFG+ + RERLL+ A
Sbjct: 115 AGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVA 174
Query: 475 KKVIQR 480
++++R
Sbjct: 175 PELLKR 180
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 404 NRSQIASRAIEAYLIQILKTGFFHADPH--------PGNLAVDLDEALIYYDFGMMG--- 452
N++ + I+ YL Q+L+ G H H P NL ++ D AL DFG+
Sbjct: 112 NKTGLQDSQIKIYLYQLLR-GVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFG 170
Query: 453 -EIKSFTRERLLDLFY 467
++S+T E ++ L+Y
Sbjct: 171 IPVRSYTHE-VVTLWY 185
>pdb|3HCW|A Chain A, Crystal Structure Of Probable Maltose Operon
Transcriptional Repressor Malr From Staphylococcus Areus
pdb|3HCW|B Chain B, Crystal Structure Of Probable Maltose Operon
Transcriptional Repressor Malr From Staphylococcus Areus
Length = 295
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 450 MMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEAL------QPTGDMSSDLFAIAQD 503
+M E+ ++R++D F +Y K+ + Q LID E++ +PT D+ I D
Sbjct: 56 LMDEVYKMIKQRMVDAFILLYSKENDPIKQMLID-ESMPFIVIGKPTSDIDHQFTHIDND 114
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump
Length = 316
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLMVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 382 LTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDE 441
L +E +PG ++++ A + +R +I + + L + K GF+H D P N+ VD +
Sbjct: 319 LVMEKLPGRLLSDMLAAG-EEIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDARQ 376
Query: 442 ALIYYDFG 449
DFG
Sbjct: 377 HARLIDFG 384
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 382 LTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDE 441
L +E +PG ++++ A + +R +I + + L + K GF+H D P N+ VD +
Sbjct: 319 LVMEKLPGRLLSDMLAAG-EEIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDARQ 376
Query: 442 ALIYYDFG 449
DFG
Sbjct: 377 HARLIDFG 384
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 361 FRNIKWVRVPLVFWDYTATKVL--TLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLI 418
F N WV +F+ + + L +EY+PG + L + Y+ + +R A ++
Sbjct: 125 FANSPWV--VQLFYAFQDDRYLYMVMEYMPGGDLVNL----MSNYDVPEKWARFYTAEVV 178
Query: 419 ----QILKTGFFHADPHPGNLAVDLDEALIYYDFG 449
I GF H D P N+ +D L DFG
Sbjct: 179 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 213
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant
Length = 316
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With
2'-deoxycytidine 5'- Monophosphate (dcmp)
pdb|1NJB|A Chain A, Thymidylate Synthase
pdb|1TVV|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant
Length = 316
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant
Length = 316
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 361 FRNIKWVRVPLVFWDYTATKVL--TLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLI 418
F N WV +F+ + + L +EY+PG + L + Y+ + +R A ++
Sbjct: 130 FANSPWV--VQLFYAFQDDRYLYMVMEYMPGGDLVNL----MSNYDVPEKWARFYTAEVV 183
Query: 419 ----QILKTGFFHADPHPGNLAVDLDEALIYYDFG 449
I GF H D P N+ +D L DFG
Sbjct: 184 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 218
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant
Length = 316
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant
Length = 316
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant
pdb|1TSW|A Chain A, Thymidylate Synthase R179a Mutant
Length = 316
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDB|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDC|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|2TDD|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
Length = 315
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 361 FRNIKWVRVPLVFWDYTATKVL--TLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLI 418
F N WV +F+ + + L +EY+PG + L + Y+ + +R A ++
Sbjct: 130 FANSPWV--VQLFYAFQDDRYLYMVMEYMPGGDLVNL----MSNYDVPEKWARFYTAEVV 183
Query: 419 ----QILKTGFFHADPHPGNLAVDLDEALIYYDFG 449
I GF H D P N+ +D L DFG
Sbjct: 184 LALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 218
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Cb3717
pdb|1LCB|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dtmp And H2folate
pdb|1LCE|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Ch2thf
pdb|1NJE|A Chain A, Thymidylate Synthase With 2'-Deoxycytidine
5'-Monophosphate (Dcmp)
pdb|1THY|A Chain A, Refined Structures Of Substrate-Bound And Phosphate-Bound
Thymidylate Synthase From Lactobacillus Casei
pdb|1TSL|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|1TSM|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|2TDM|A Chain A, Structure Of Thymidylate Synthase
pdb|4TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|3BNZ|A Chain A, Crystal Structure Of Thymidylate Synthase Ternary Complex
With Dump And 8a Inhibitor
pdb|3BYX|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00 In Multiple
Binding Modes
pdb|3BZ0|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00
pdb|3C06|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 1
pdb|3C0A|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 2
pdb|3IJZ|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Pthalimidic Derivative 15c
pdb|3IK0|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 7c1
pdb|3IK1|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 20c
Length = 316
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With
2'-Deoxycytidine 5'- Monophosphate (Dcmp)
pdb|1NJD|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxyuridine
5'- Monophosphate (Dump)
Length = 316
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant
Length = 316
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'-
Deoxyuridine 5'-Monophosphate (Dump)
Length = 316
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVW|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVU|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Dump
pdb|1VZC|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Fdump
pdb|1VZD|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Fdump And Cb3717
pdb|1VZE|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Dump And Cb3717
Length = 316
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 337 CATILYQEIDYINEGKNADRFRRDFRN-IKWVRVPLVFWDYTA---------TKVLTLEY 386
C Y I + + R + + N IK++ P +D A + L +E
Sbjct: 264 CKFFYYDMPHGILTAEESQRNKHELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEK 323
Query: 387 VPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYY 446
+PG ++++ A + +R +I + + L + K GF+H D P N+ VD +
Sbjct: 324 LPGRLLSDMLAAG-EEIDREKILGSLLRS-LAALEKKGFWHDDVRPWNVMVDARQHARLI 381
Query: 447 DFG 449
DFG
Sbjct: 382 DFG 384
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump
Complex
Length = 316
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLWVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With
Substrate, Dump
Length = 316
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 249 HFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLR 308
H + +E G + + TF D + L Q+ + P +FD D++
Sbjct: 238 HLVAHECGLEVGEFIHTFGDAHLFVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMK 297
Query: 309 NLKLI 313
++KL+
Sbjct: 298 DIKLL 302
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 392 INELKALDLQGYNRSQIASRAIEAYLI-QILK-------TGFFHADPHPGNLAVDLDEAL 443
+ L DL +SQ S +L+ Q+L+ G H D P N+AV+ D L
Sbjct: 111 VTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDSEL 170
Query: 444 IYYDFGM 450
DFG+
Sbjct: 171 RILDFGL 177
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 687 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 744
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 745 YHDRFKVFADYEAYVK 760
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 710 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 767
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 768 YHDRFKVFADYEAYVK 783
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 709 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 766
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 767 YHDRFKVFADYEAYVK 782
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 709 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 766
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 767 YHDRFKVFADYEAYVK 782
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 712 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 769
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 770 YHDRFKVFADYEAYVK 785
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 709 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 766
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 767 YHDRFKVFADYEAYVK 782
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 710 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 767
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 768 YHDRFKVFADYEAYVK 783
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 386 YVPGVKINELKALDLQGYNRSQIASRAIEAYL-IQILKTGFFHADPHPGNLAVDLDEALI 444
++ G++I+++ ALD +GY + E L I + GFF P +L D+ L
Sbjct: 711 FIFGMRIDDVAALDKKGYEAKEYYEALPELKLVIDQIDNGFF--SPKQPDLFKDIINMLF 768
Query: 445 YYD-FGMMGEIKSFTR 459
Y+D F + + +++ +
Sbjct: 769 YHDRFKVFADYEAYVK 784
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,209,532
Number of Sequences: 62578
Number of extensions: 799351
Number of successful extensions: 2162
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 88
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)