BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005826
(675 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 520 bits (1339), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/581 (46%), Positives = 377/581 (64%), Gaps = 47/581 (8%)
Query: 125 SNELPPVEELKVLPSDESFSWANENYNSWQRIIDVWSFVLSLQIRILFDNAKWAYLGGFS 184
S LPP + L ++ + W NY+ +R ID+W FVL+L + + KW+Y GG++
Sbjct: 15 SESLPP-QRRSPLEAEGRYRWNRGNYSITRRRIDIWGFVLTLLYQFWLNGKKWSYAGGYT 73
Query: 185 EDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSP 244
E+K + RRR+ A W+RE++L LGPTFIK+GQL STRSDLFP E+V+EL+KLQD VPAFS
Sbjct: 74 EEKLQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSY 133
Query: 245 EKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFD 304
E+A I+ ELG PI +L+++F+ P+AAASLGQVH+A LH GE VVVKVQRPGLK+LF
Sbjct: 134 EQAAGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQLHTGEDVVVKVQRPGLKKLFT 193
Query: 305 IDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNI 364
IDL LK IA+YFQ +G RDW GIY+EC IL+QE DY+ EG++AD FRR+FR
Sbjct: 194 IDLAILKKIAQYFQNHPKWGR-GRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGE 252
Query: 365 KWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTG 424
WV+VP V+W YT+T++LTLEY+PG+KI+ AL+ G R ++A AYL Q+L G
Sbjct: 253 DWVKVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHG 312
Query: 425 FFHADPHPGNLAVDLDEA-LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID 483
FFHADPHPGNLAV + LI+YDFGMMGEI T+ +L+D + V EK+A++++ L+
Sbjct: 313 FFHADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVA 372
Query: 484 LEALQPTGDM---------------------------SSDLFAIAQDQPFRFPSTFTFVI 516
L AL+ T DM S DL+ IA DQPFRFP+TFTFV+
Sbjct: 373 LGALKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVM 432
Query: 517 RAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMS 576
RAFSTLEG+G LDPDF+F+ VA P+A ++++ +++++ +QA +S +
Sbjct: 433 RAFSTLEGVGKGLDPDFNFMAVAQPFALQIMNNSNGFNPAGNIMDELGRQAVQVGNSALG 492
Query: 577 MPSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFT 636
+P +RIE+ + +L+ GD+++RVR E++R R+ +QM T Y + L+ L T
Sbjct: 493 LP---RRIEDSLDRLDRGDIRVRVRSTETDRLLRRMGTMQMGTNYVLFTCALV-LSATL- 547
Query: 637 GQGSQIIANGSFIGAGVFFTL-------LLRSMQRVKKLDK 670
+ N F+ A V + L R ++R+++ D+
Sbjct: 548 -----LFVNNYFMAAAVVLLMSLVPAFALWRLLKRLERQDR 583
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 345 bits (885), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 193/532 (36%), Positives = 300/532 (56%), Gaps = 48/532 (9%)
Query: 139 SDESFSWANENYNSWQRIIDVWSFVLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASW 198
+D SW+ + W+R + V L + +D + + RR + A W
Sbjct: 9 ADRPLSWSGLSRRPWRRQLAVTRVFLLFVFFLSWDR--------LTAPRSAQRRYRRAQW 60
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
L + +L LGPTFIK+GQ STR+D+ P E+++ +LQDRVP F +A I+ EL
Sbjct: 61 LVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGA 120
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDL----RNLKLIA 314
I+++F+ FE P+A+ASLGQVHRA+L GE VVVKVQRPGL L ++D + L+L
Sbjct: 121 IDEIFQQFEVTPLASASLGQVHRAVLPTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAK 180
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+ + IY E ++L+ EIDYI+EGKNA+RFR++F + VRVP ++W
Sbjct: 181 RWLPGFRRLAQ-KYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYPRVRVPEIYW 239
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
YT VLTLEY+PG+K+++ +AL+ G N + I AYL Q+L GFF +DPHPGN
Sbjct: 240 QYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGN 299
Query: 435 LAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMS 494
+AVD LI+YDFG M E+K +++++ F+AV KD +V++ LI + ++P GD+S
Sbjct: 300 MAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLS 359
Query: 495 ---------------------------SDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGN 527
+++A+ Q QPFR P TF++++ STL+GI
Sbjct: 360 PIKRIINFLLDNFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKSISTLDGIAR 419
Query: 528 ILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQR-IEE 586
LDP ++ + + P+ Q + + ++ L++Q+++ A D ++ PSR Q+ ++E
Sbjct: 420 ALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQQVKQFALD----QLNRPSRNQQFLQE 475
Query: 587 FVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVC--GGTLLNLGVTFT 636
+LE G+L+ R E +R RK L + ++ C G TLL+ V +
Sbjct: 476 LAAKLERGELQFATRSPEGDRLLRKIH-LALKSLIFACLTGFTLLSATVLLS 526
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 266 bits (679), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 159/442 (35%), Positives = 238/442 (53%), Gaps = 38/442 (8%)
Query: 153 WQRIIDVWSFVLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIK 212
W+ + VWSF L +L+D +W + + +R+ A LRE + +LGPTFIK
Sbjct: 37 WRALEVVWSFGFFLTC-LLWD--QWT-------GQVEYYKRQRAEDLRELLTKLGPTFIK 86
Query: 213 LGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIA 272
+GQ STR DL R+F++EL KLQD++P F + A ++ +LG +++ ++ P+A
Sbjct: 87 VGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVDEAYREISAHPVA 146
Query: 273 AASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIG 332
AASLGQV+RA+L +GE+V VKVQRP L+ +DL ++L A+ F R D
Sbjct: 147 AASLGQVYRAMLFSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGRFLPLNL-GHDLTL 205
Query: 333 IYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKI 392
I DE L++EIDY+NEG+NA++F +F V+VP ++W Y+ KVLTLE++ G K+
Sbjct: 206 IVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQKVLTLEWIQGFKL 265
Query: 393 NELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMG 452
+ + G + S I + + L Q+L+ GFFHADPHPGNL LD + Y DFGMM
Sbjct: 266 TDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLDGRMAYIDFGMMD 325
Query: 453 EIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGD-------------------- 492
+++ T+E + + KD + + I L L P D
Sbjct: 326 QLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPALENVFGSAIGQSV 385
Query: 493 -------MSSDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQE 545
++ D + D PFR P+ F +IR+ T EG+ LDP+F V+VA PY
Sbjct: 386 QDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNFKIVEVAYPYVAR 445
Query: 546 LLDLKQQQQSGTQLVEQIRKQA 567
L + Q QL++ + K
Sbjct: 446 RLLTGESPQLRRQLIDVLFKNG 467
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 265 bits (678), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/438 (35%), Positives = 235/438 (53%), Gaps = 39/438 (8%)
Query: 163 VLSLQIRILFDNAK------WAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQL 216
VL I ILF + W L G K R A LRE + LGPT+IK+GQ
Sbjct: 69 VLGRLINILFPLLRFILGIWWEKLRG----KDPTVSRAKAIQLRELLTNLGPTYIKVGQA 124
Query: 217 SSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASL 276
STR DL P F+DEL LQD++P+F E A FI+ ELGAP E+++ PIAAASL
Sbjct: 125 LSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYAELSPEPIAAASL 184
Query: 277 GQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDE 336
GQV++ L GE V VKVQRP L R +D+ ++ ++ + +RS D + I DE
Sbjct: 185 GQVYKGKLKTGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRS--VKRLRSDLVAITDE 242
Query: 337 CATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELK 396
A+ +++E++Y E N ++F + + ++ + VP ++W YT +VLT+E+V G+K+ +K
Sbjct: 243 LASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTMEWVEGIKLTNIK 302
Query: 397 ALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKS 456
A+ QG + + + ++ L Q+L+ GFFHADPHPGNL D L Y DFGMM I+
Sbjct: 303 AIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAYLDFGMMSTIQP 362
Query: 457 FTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSDLFAIAQ-------------- 502
+ R L++ + +D + + + L+ L+P D+ + A+ Q
Sbjct: 363 YQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFGNALGASVAELN 422
Query: 503 -----DQ--------PFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDL 549
DQ PFR P+ + +IR+ TLEGI +DP+F + A PY + L
Sbjct: 423 FKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSKAYPYIAKRLLT 482
Query: 550 KQQQQSGTQLVEQIRKQA 567
Q ++ T L E + K+
Sbjct: 483 DQSEELRTSLKELLFKEG 500
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 220/405 (54%), Gaps = 39/405 (9%)
Query: 180 LGGFS-----EDKQKN---RRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDE 231
LGGF+ + KQ N +K A LR +LGPTF+KLGQ STR DL P ++++E
Sbjct: 123 LGGFALKLGIDQKQGNLEKNMKKRAIELRRIFTRLGPTFVKLGQGLSTRPDLCPPDYLEE 182
Query: 232 LAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAIL-HNGEKV 290
LA+LQD +P F +A I+ EL +E +F + PIAAASLGQV++A L ++G+ V
Sbjct: 183 LAELQDALPTFPDAEAFACIERELDLSLETIFSSVSPEPIAAASLGQVYKAQLRYSGQVV 242
Query: 291 VVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINE 350
VKVQRPG++ +D ++ + + + F T D + + DE A +YQE++Y+ E
Sbjct: 243 AVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDF--ITTDVLTLIDEFACRVYQELNYVQE 300
Query: 351 GKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAS 410
+NA RF++ + + V VP +FWDYT+ KVLT+E+V G K+NE A++ QG + +
Sbjct: 301 AQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQGLKVLDLVN 360
Query: 411 RAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVY 470
I+ L Q+L+ GFFHADPHPGNL D L + DFGMM E R ++ +
Sbjct: 361 TGIQCSLRQLLEYGFFHADPHPGNLLATPDGKLAFLDFGMMSETPEEARFAIIGHVVHLV 420
Query: 471 EKDAKKVIQRLIDLEALQPTGDMSS------DLF---------------------AIAQD 503
+D + + + L+ L P D++ D F A+
Sbjct: 421 NRDYEAMARDYYALKFLSPDVDVTPIIPALRDFFDDALNYTVSELNFKTLVDGLGAVFYQ 480
Query: 504 QPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPY-AQELL 547
PF P + ++R+ + LEG+ DP+F + + PY A+ LL
Sbjct: 481 YPFNVPPYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLL 525
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/393 (35%), Positives = 213/393 (54%), Gaps = 41/393 (10%)
Query: 196 ASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNEL 255
A+ LR+ +++LGP ++K+ Q S+R DL P ++DEL+ LQD++ FS E A + I++EL
Sbjct: 120 AAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDEL 179
Query: 256 GAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVV-VKVQRPGLKRLFDIDLRNLKLIA 314
G PI++LF P+AAASLGQV++A L KVV VKVQRPG++ +D L+ IA
Sbjct: 180 GLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILRYIA 239
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+++ F D + DE AT L++E+DY+NE +N +FR+ + IK V VP ++
Sbjct: 240 GLIKKAGRFNS---DLEAVVDEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLVPKMYT 296
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
+Y+ +KVL +E+V G K+NE+ L L + Q+L+ GF+HADPHPGN
Sbjct: 297 EYSTSKVLVMEWVEGQKLNEVNDLYL--------VEVGVYCSFNQLLEYGFYHADPHPGN 348
Query: 435 LAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPT---- 490
D L Y DFGMMG+ + R+ ++ + +D K + + + L L PT
Sbjct: 349 FLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKS 408
Query: 491 -----------------------GDMSSDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGN 527
GD+ DL FR P F+ VIR+ + LEGI
Sbjct: 409 AVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAI 468
Query: 528 ILDPDFSFVKVAAPY-AQELL-DLKQQQQSGTQ 558
+ P++ + P+ A+++L D Q +S Q
Sbjct: 469 GISPNYKVLGSTYPWIARKILTDSSPQLKSSLQ 501
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 137/424 (32%), Positives = 213/424 (50%), Gaps = 31/424 (7%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P ++ ELAKLQD+VP F +R I+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IE+L+ FE PIA+AS+ QVH+A LH+GE+V VKV RP L L + DL ++ A + +
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGERVAVKVLRPNLLPLIEQDLSLMRFGAAWVE 173
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R + G + + + E L+ E+D + E NA + R+F N + VP VF+DY
Sbjct: 174 RLFSDGRRLKP-LEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYDYCT 232
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
+ VLT+E++ G + ++ L G + ++A +E + Q+ + GFFHAD HPGN+ V
Sbjct: 233 SDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVA 292
Query: 439 LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLI------------DLEA 486
D I DFG++G + + + L F A + +D ++V I +LEA
Sbjct: 293 ADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEELEA 352
Query: 487 L----------QPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDP 531
+P +S LF +++ + + +EG+G LDP
Sbjct: 353 AVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDP 412
Query: 532 DFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQRIEEFVKQL 591
D K A P+ L+ Q L ++ +A D S+P ++ + + +Q
Sbjct: 413 DLDLWKTAKPF---LVKWMNGQVGPKALWRNLKNEAPDWAQIIPSLPRKISALIDENRQQ 469
Query: 592 EAGD 595
E D
Sbjct: 470 EMRD 473
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 216/426 (50%), Gaps = 35/426 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P ++ ELAKLQD+VP F +R I+ LG
Sbjct: 54 LRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSLGQS 113
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IE+L+ FE PIA+AS+ QVH+A LH+GE+V VKV RP L + + DL ++ A + +
Sbjct: 114 IEKLYAEFETEPIASASIAQVHKARLHSGEQVAVKVLRPNLLPVIEQDLSLMRFGAGWVE 173
Query: 319 RSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDY 376
R G R+ + +D+ L+ E+D + E NA + R+F+N + VP VF+DY
Sbjct: 174 RLFADGKRLKPREVVAEFDK---YLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYDY 230
Query: 377 TATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLA 436
+ VLT+E++ G ++++ L G + ++A +E + Q+ + GFFHAD HPGN+
Sbjct: 231 CTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNIL 290
Query: 437 VDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLI------------DL 484
V D I DFG++G + + + L F A + +D ++V I +L
Sbjct: 291 VAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEEL 350
Query: 485 EAL----------QPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNIL 529
EA +P +S LF +++ + + +EG+G L
Sbjct: 351 EAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQL 410
Query: 530 DPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQRIEEFVK 589
DPD K A P+ L+ Q L ++ +A D S+P ++ + + +
Sbjct: 411 DPDLDLWKTAKPF---LVKWMNGQVGPKALWRNLKNEAPDWAQIIPSLPRKISALIDENR 467
Query: 590 QLEAGD 595
Q E D
Sbjct: 468 QQEMRD 473
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 204/397 (51%), Gaps = 33/397 (8%)
Query: 177 WAYLG-GFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKL 235
AY G GF D + N +K+ LR++ +LGPTFIK+GQ+ STR DL P ++ EL+KL
Sbjct: 13 LAYYGFGFIVDSKLNGNKKSPENLRKAFEELGPTFIKIGQILSTRPDLLPLPYIKELSKL 72
Query: 236 QDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQ 295
Q+ VP + + EL + I+ F F+ PI +AS+ QVH AIL +G V+VK+Q
Sbjct: 73 QNNVPPENFIDIENLFFEELSSTIDNTFLYFDKTPIGSASIAQVHDAILKDGRFVIVKIQ 132
Query: 296 RPGLKRLFDIDLRNLKLIAEYFQRSET-FGGPTRDWIGIYDECATILYQEIDYINEGKNA 354
RPG+ + D L +I + ++T F D DE QE+D+INE N
Sbjct: 133 RPGIAEMMKTD---LSIIKKLLNITKTKFTDALIDPKEAIDELFISTTQELDFINEINNI 189
Query: 355 DRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIE 414
+F++ ++K+VR P K++ +E + G+KI+ LK L +GY+ ++ +
Sbjct: 190 KKFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNEGYDLEELGKKLTL 249
Query: 415 AYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+Y Q+ + GFFH DPHPGNL + + + Y DFG+MG I + L D AV D
Sbjct: 250 SYFKQVFQDGFFHGDPHPGNLLIR-ENHICYIDFGIMGTISKSLKISLNDAILAVAYHDV 308
Query: 475 KKVIQRLIDL-------------EALQPTGD--------------MSSDLFAIAQDQPFR 507
K+I ++ + E+++ D M ++F I+++ +
Sbjct: 309 NKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKNIKISVMLQEIFQISKNNNIK 368
Query: 508 FPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQ 544
P T ++++ +EG+ + P+ S V V PY +
Sbjct: 369 LPKELTMLLKSTLMIEGVIARISPELSIVDVLIPYVK 405
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 221/450 (49%), Gaps = 43/450 (9%)
Query: 164 LSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDL 223
L ++I F A W F + K R LR ++ +LGP F+K GQ+ STR DL
Sbjct: 28 LPTPLKIFFLLAPWHL---FPQPKLSRGDR-----LRLALEELGPVFVKFGQILSTRRDL 79
Query: 224 FPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAI 283
P + + L +LQDRVP F E+AR I+ LGAP+ +LF F P+A+AS+ QVH A
Sbjct: 80 LPDDMAESLKQLQDRVPPFPSEQARGIIEKSLGAPVSELFAEFSPDPMASASVAQVHAAT 139
Query: 284 LHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQ 343
L NG+KVVVKV RPG++++ DL + L+A ++ + G + D +TI +
Sbjct: 140 LPNGQKVVVKVLRPGIEKVIRQDLGLMYLMAGLLEKYWSEGKRLHPVEVVADYDSTI-HD 198
Query: 344 EIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGY 403
E+D E NA + RR+F N + +P + WDYT VL +E + G+ I ++ AL+ G
Sbjct: 199 ELDLQREAANASQLRRNFENSPLIYIPFIDWDYTRKSVLVMERIHGIPIADVPALEKAGV 258
Query: 404 NRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTR 459
N +A + +E + Q+ + FFHAD HPGN+ VD+ D I DFG++G + +
Sbjct: 259 NMRVLAEKGVEIFFTQVFRDSFFHADMHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQ 318
Query: 460 ERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSDLFAIAQ------DQPFRFPSTFT 513
L A + +D ++V Q I + P ++ AI ++P + S
Sbjct: 319 SYLARNLLAFFRRDYRQVAQLHIQSGWVPPETRVNEFEAAIRTVCEPIFERPLKDISFGH 378
Query: 514 FVIRAFST---------------------LEGIGNILDPDFSFVKVAAPYAQELLDLKQQ 552
F++R F T +EG+G L PD A P+ L D ++
Sbjct: 379 FLLRLFQTARRFNMEVQPQLVLLQKTLLNVEGLGRQLYPDLDLWSTAQPF---LEDWMRK 435
Query: 553 QQSGTQLVEQIRKQADDARSSTMSMPSRVQ 582
+ + L++ ++ + MP V
Sbjct: 436 RIGPSGLIKSLQNHLPSWLEQSPEMPQLVH 465
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 237/469 (50%), Gaps = 50/469 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P + DELAKLQD+VP F A ++N LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++ LF FE P+A+AS+ QVH A + H G+ V VKV RP + + D DL L+ IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
+W++ VL +E + GV I++++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD A I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTG---DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
PT ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQ-LVEQIRKQADDARSSTMSMPSR 580
+EG+G LDP+ K A PY + ++ +Q G + E+++ +A + +P
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLERWMN----EQIGLRGWYERLKIEAPQWSKTLPQLPRL 464
Query: 581 VQR--IEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGT 627
+ E + A D +R +LE +R R +LQ ++ V G
Sbjct: 465 IHHALAERHDNKRGANDDMIRQILLEQKRTNR---LLQGLLLFGVAVGV 510
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 227/469 (48%), Gaps = 63/469 (13%)
Query: 170 ILFDNAKWAYLGGFSEDKQKNRRRKTASW---------------LRESVLQLGPTFIKLG 214
IL+ L GF K+RR + W LR ++ QLGP F+K G
Sbjct: 14 ILYHGLDQLALSGF-----KSRRIRALVWVLTLGRRQTRPRGERLRLALEQLGPIFVKFG 68
Query: 215 QLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAA 274
Q+ STR DL P + DELAKLQDRVP F P+ A ++ LG P+ LF F+ P+A+A
Sbjct: 69 QVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERSLGKPLSALFHRFDHHPVASA 128
Query: 275 SLGQVHRAILH----NGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGG--PTR 328
S+ QVH A L +G +V VKV RPG+ + D DL ++ +A + ++ G R
Sbjct: 129 SIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALMRDVATWMEKLWADGKRLKPR 188
Query: 329 DWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVP 388
+ + +D+ L+ E+D + E NA + RR+F + + VP VFWD+ ++V +E +
Sbjct: 189 EVVAEFDK---YLHDELDLMREAANASQLRRNFAKSELLLVPEVFWDWCTSEVFVMERMH 245
Query: 389 GVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVDL-DEAL---I 444
GV+++ L G + ++A +E + Q+ + GFFHAD HPGN+ V + E+L I
Sbjct: 246 GVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMHPGNILVSVAPESLGRYI 305
Query: 445 YYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVI------------QRLIDLEAL----- 487
DFG++G + F + L F A +++D +V R+ +LE
Sbjct: 306 ALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGWAPEETRVEELEGAIRACC 365
Query: 488 -----QPTGDMSSDLFAIAQDQPFR-----FPSTFTFVIRAFSTLEGIGNILDPDFSFVK 537
+P G++S L + Q R + + +EG+G LDPD K
Sbjct: 366 EPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLLNVEGLGRQLDPDLDLWK 425
Query: 538 VAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRVQRIEE 586
A P+ + + +Q LV++++ +A + P +I E
Sbjct: 426 TAKPFLERWM---HEQIGWRGLVDRLKIEAPQWANMLPDFPRLAHQILE 471
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/469 (30%), Positives = 232/469 (49%), Gaps = 49/469 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL + ELAKLQD+VP F A I+ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++ +F FE P+A+AS+ QVH A L H G++V VKV RP + + D DL L+ IA
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
+W+Y VL +E + GV I+++ L + G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 YWEYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LE 485
GN+ V LD A I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 486 ALQPTGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
A ++ S + A+ + D+ + S ++R FST
Sbjct: 349 ATTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSRV 581
+EG+G LDP+ K A PY + ++ +Q E+++ +A + +P +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLERWMN---EQIGAKGWYERLKIEAPQWSKTLPQLPRLI 465
Query: 582 QRI---EEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGT 627
+ +Q D +R +LE +R R +LQ M+ V G
Sbjct: 466 HHVLAQRHDAQQRGINDETIRQILLEQKRTNR---LLQGLLMFGVAVGV 511
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 237/477 (49%), Gaps = 50/477 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P + +ELAKLQD+VP F A ++ LGAP
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++ LF FE P+A+AS+ QVH A + H G+ V VKV RP + + D DL L+ IA
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
+W++ VL +E + GV I++++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 YWEFCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD A I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 PTG---DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
PT ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PTTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQ-LVEQIRKQADDARSSTMSMPSR 580
+EG+G LDP+ K A PY + ++ +Q G + E+++ +A + +P
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLERWMN----EQIGLRGWYERLKIEAPQWSKTLPQLPRL 464
Query: 581 VQR--IEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTF 635
+ E A D +R +LE +R R +LQ ++ V G L F
Sbjct: 465 IHHALAERHDHTRGANDEMIRQILLEQKRTNR---LLQGLLLFGVAVGVGAALARVF 518
>sp|Q9PCE8|UBIB_XYLFA Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain 9a5c) GN=ubiB PE=3 SV=1
Length = 552
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/512 (29%), Positives = 246/512 (48%), Gaps = 56/512 (10%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+G +VVVKV RP ++
Sbjct: 100 GQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDGREVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRN 363
D+ LK +A + + R I E T L E+D EG NA RR +
Sbjct: 160 SDDIALLKSLATLVEHTHPNADKIRP-CEIVAEIETTLAAELDLQREGANASVLRRFWEA 218
Query: 364 IKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKT 423
+ VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+ +
Sbjct: 219 SDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRD 278
Query: 424 GFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKV 477
FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD +++
Sbjct: 279 NFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRI 338
Query: 478 IQ------------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPS 510
+ R+ +LEA +P +S LF +A+
Sbjct: 339 AELHVEAGWIPPHVRIEELEAAARSVCEPYFTRPLSQISLAEVLMKLFHVARRYQLTLQP 398
Query: 511 TFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDA 570
+ + +EG+G LDP+ VA P + +L + + S ++++ K+ +
Sbjct: 399 QLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL---RARYSPRHALKELNKRLPEI 455
Query: 571 RSSTMSMPSRVQRIEEFVKQLEA---GDLKL-RVRVLESERAARKATILQMATMYTVCGG 626
+ P + V+Q+E+ D+ L ++R L A LQ + + G
Sbjct: 456 MTHAPDTPRLIH--TWLVQQVESRKQNDVYLQQIRAL-----AMTLQGLQRRVVNAIVGS 508
Query: 627 TLLNLGVTFTGQGSQIIANGSFIGAGVFFTLL 658
LL G + +G ++GA ++L+
Sbjct: 509 GLLVAAAVLYG----LHPDGLYLGAIPVWSLI 536
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/401 (32%), Positives = 207/401 (51%), Gaps = 35/401 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DELA+LQD+VP F ++A I+ +LGAP
Sbjct: 59 LRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQLGAP 118
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ QLF F+ +P+A+AS+ QVH A L +GE+VVVKV RPGLK + DL L L+A +
Sbjct: 119 VSQLFARFDSQPLASASVAQVHAAQLKSGEEVVVKVVRPGLKPVIRQDLAWLFLLARIAE 178
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ R + + + ++ E+D + E NA + RR+F + VP V+WD
Sbjct: 179 RASADARRLRP-VEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYWDLCR 237
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
+VL +E + GV + +L L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 238 HQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVS 297
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
I D G++G + ++ L A +++D +KV Q ID + A
Sbjct: 298 TRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPADTKVN 357
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
+ + + + + ++P + S ++R F T +EG+G
Sbjct: 358 EFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGR 417
Query: 528 ILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQAD 568
L PD A P+ + + +++ S L+ +++QA+
Sbjct: 418 QLYPDLDLWSTAQPFLERWM---RERVSPLHLLRNLQQQAE 455
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 40/383 (10%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP F+K GQ+ STR DL P +F +ELAKLQD+VP F A ++ LGA
Sbjct: 52 LRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSLGAR 111
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL----HNGEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I+ LF FE P+A+AS+ QVH A L H G+ V VKV RP + + D DL ++ IA
Sbjct: 112 IDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMRDIA 171
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ +R G R+ + +D+ L+ E+D + E N + RR+F + + VP +
Sbjct: 172 TWAERLWADGRRLKPREVVAEFDKY---LHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWDY+ VL +E + GV I+++ L G + ++A +E + Q+ + GFFHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQ 488
GN+ V LD I DFG++G + F + L F A +++D +V ++ +
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 489 P---TGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
P ++ S + A+ + D+ + S ++R FST
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 522 LEGIGNILDPDFSFVKVAAPYAQ 544
+EG+G LDP+ K A PY +
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYLE 431
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/493 (30%), Positives = 235/493 (47%), Gaps = 55/493 (11%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++RK+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLGELRKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFTG 637
P V ++KQ G +L +R E LQ + + G LL + G
Sbjct: 468 PRLVH---SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLYG 524
Query: 638 QGSQIIANGSFIG 650
+ NG ++G
Sbjct: 525 ----LHPNGWYLG 533
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 209/400 (52%), Gaps = 35/400 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +ELAKLQDRVP F + +R + LG P
Sbjct: 53 LRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQSLGRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IE++F +F+ P+A+AS+ QVH +LH+G +V VKV RP + + + DL L++ A + +
Sbjct: 113 IEEVFASFDADPVASASIAQVHFGVLHDGREVAVKVLRPNVLNIIEADLALLRVAAAWLE 172
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R G R + E L+ E+D E NA + RR+ + + +P + WD ++
Sbjct: 173 RLSPDGRRLRP-REVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIWDLSS 231
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
+VL +E + GV I++++ L G + ++A + + Q+ + GFFHAD HPGN+ V
Sbjct: 232 AEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIMVS 291
Query: 439 LDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
A I DFG++G + S +E L F A + +D ++V + I+ + A
Sbjct: 292 TAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWVPASTRVD 351
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
++ + A+ + D+P + S ++R F T +EG+G
Sbjct: 352 ELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVEGLGR 411
Query: 528 ILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQA 567
LDP+ + A P+ + ++ +Q L+ I+ +A
Sbjct: 412 QLDPELDLWQTAKPFLERWMN---EQVGWRALLGSIKDEA 448
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 195/380 (51%), Gaps = 32/380 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P + DEL LQDRVP F+P+++ I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQLGAR 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+++ F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L L A +
Sbjct: 120 VDEAFARFDSEPLASASVAQVHAAQLKTGEEVVVKVVRPGLKAVIRQDLAWLYLFARLAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ T + + + +Y E+D + E NA + +R+F + VP ++WD+
Sbjct: 180 RAST-EARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYWDWCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + +L AL QG + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
D I D G++G + ++ L A +++D +KV Q ID + A
Sbjct: 299 TRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPADTQVN 358
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
+ + + + + ++P + S ++R F T +EG+G
Sbjct: 359 EFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGR 418
Query: 528 ILDPDFSFVKVAAPYAQELL 547
L P+ A P+ + +
Sbjct: 419 QLYPELDLWTTAKPFLERWM 438
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 202 bits (513), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/380 (33%), Positives = 191/380 (50%), Gaps = 32/380 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P+KA I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPPDIADELMLLQDRVPPFDPKKAVALIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + + VP V+WD
Sbjct: 180 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEDSELMYVPQVYWDLCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID----------- 483
I D G++G + + ++ L +A +++D ++V Q ID
Sbjct: 299 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPANTKVN 358
Query: 484 -LEAL----------QPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGN 527
EA +P D+S LF A+ + + +EG+G
Sbjct: 359 EFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGR 418
Query: 528 ILDPDFSFVKVAAPYAQELL 547
L PD A PY + +
Sbjct: 419 QLYPDLDLWSTAKPYLERWM 438
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 221/430 (51%), Gaps = 48/430 (11%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ LGP F+K GQ+ STR DL P + DELA LQDRVP F P+ A I+ P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHN----GEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I ++F +F+ +P+A+AS+ QVH A++ + +V VKV RPG+ + D DL ++++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ + G R+ + +D L+ E+D + E NA + RR+ + + V +P V
Sbjct: 173 GWVESLSADGKRLKPREVVAEFD---NYLHDELDLVREAANAAQLRRNMQGLDLVLIPEV 229
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWD+ +VL +E + GV IN+++ L G + ++A + + Q+ + GFFHAD HP
Sbjct: 230 FWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHP 289
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LE 485
GN+ V L I DFG++G + F +E L F A + +D K+V + I+ +
Sbjct: 290 GNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVP 349
Query: 486 ALQPTGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
A ++ + + + + D+P + S ++R F T
Sbjct: 350 AHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLN 409
Query: 522 LEGIGNILDPDFSFVKVAAPYAQE-LLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSR 580
+EG+G LDPD A P+ ++ +LD Q +L ++R +A +P
Sbjct: 410 IEGLGRQLDPDLDLWSTAKPFLEKWMLD----QLGPQRLWRELRAEAPHYAKILPDLP-- 463
Query: 581 VQRIEEFVKQ 590
+ + +F++Q
Sbjct: 464 -RLLHDFLRQ 472
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/493 (30%), Positives = 235/493 (47%), Gaps = 55/493 (11%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++RK+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLGELRKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFTG 637
P V ++KQ G +L +R E LQ + + G LL + G
Sbjct: 468 PRLVH---SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLYG 524
Query: 638 QGSQIIANGSFIG 650
+ +G ++G
Sbjct: 525 ----LHPDGWYLG 533
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/493 (30%), Positives = 235/493 (47%), Gaps = 55/493 (11%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++RK+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLGELRKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVRVLESERAARKATILQMATMYTVCGGTLLNLGVTFTG 637
P V ++KQ G +L +R E LQ + + G LL + G
Sbjct: 468 PRLVH---SWLKQQVEGRHQLDIRSSELRALDLSLRKLQTRVVTAITGSGLLVVAAVLYG 524
Query: 638 QGSQIIANGSFIG 650
+ +G ++G
Sbjct: 525 ----LHPDGWYLG 533
>sp|Q87CN1|UBIB_XYLFT Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1
Length = 552
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 200/400 (50%), Gaps = 44/400 (11%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+ VVVKV RP ++
Sbjct: 100 GQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWI---GIYDECATILYQEIDYINEGKNADRFRRD 360
D+ LK +A + + P D I I E T L E+D EG NA RR
Sbjct: 160 SDDIALLKSLATLVEHTH----PNADKIRPREIVAEIETTLAAELDLQREGANASVLRRF 215
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
+ + VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+
Sbjct: 216 WEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQV 275
Query: 421 LKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+ FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD
Sbjct: 276 FRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDY 335
Query: 475 KKVIQ------------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFR 507
+++ + R+ +LEA +P +S LF +A+
Sbjct: 336 RRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTRPLSQISLAEVMMKLFHVARRYQLT 395
Query: 508 FPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELL 547
+ + +EG+G LDP+ VA P + +L
Sbjct: 396 LQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL 435
>sp|B2I583|UBIB_XYLF2 Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M23) GN=ubiB PE=3 SV=1
Length = 552
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 200/400 (50%), Gaps = 44/400 (11%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+ VVVKV RP ++
Sbjct: 100 GQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRAVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWI---GIYDECATILYQEIDYINEGKNADRFRRD 360
D+ LK +A + + P D I I E T L E+D EG NA RR
Sbjct: 160 SDDIALLKSLATLVEHTH----PNADKIRPREIVAEIETTLAAELDLQREGANASVLRRF 215
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
+ + VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+
Sbjct: 216 WEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQV 275
Query: 421 LKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+ FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD
Sbjct: 276 FRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDY 335
Query: 475 KKVIQ------------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFR 507
+++ + R+ +LEA +P +S LF +A+
Sbjct: 336 RRIAELHVEAGWIPPHVRIEELEAAARSVCEPYFTRPLSQISLAEVMMKLFHVARRYQLT 395
Query: 508 FPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELL 547
+ + +EG+G LDP+ VA P + +L
Sbjct: 396 LQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL 435
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 220/430 (51%), Gaps = 48/430 (11%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ LGP F+K GQ+ STR DL P + DELA LQDRVP F P+ A I+ P
Sbjct: 53 LREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHN----GEKVVVKVQRPGLKRLFDIDLRNLKLIA 314
I ++F +F+ +P+A+AS+ QVH A++ + +V VKV RPG+ + D DL ++++A
Sbjct: 113 IGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMA 172
Query: 315 EYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLV 372
+ + G R+ + +D L+ E+D + E NA + RR+ + + V +P V
Sbjct: 173 GWVESLSADGKRLKPREVVAEFD---NYLHDELDLVREAANAAQLRRNMQGLDLVLIPEV 229
Query: 373 FWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHP 432
FWD+ +VL +E + GV IN++ L G + ++A + + Q+ + GFFHAD HP
Sbjct: 230 FWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHP 289
Query: 433 GNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LE 485
GN+ V L I DFG++G + F +E L F A + +D K+V + I+ +
Sbjct: 290 GNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVP 349
Query: 486 ALQPTGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST--------------------- 521
A ++ + + + + D+P + S ++R F T
Sbjct: 350 AHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLN 409
Query: 522 LEGIGNILDPDFSFVKVAAPYAQE-LLDLKQQQQSGTQLVEQIRKQADDARSSTMSMPSR 580
+EG+G LDPD A P+ ++ +LD Q +L ++R +A +P
Sbjct: 410 IEGLGRQLDPDLDLWSTAKPFLEKWMLD----QLGPQRLWRELRAEAPHYAKILPDLP-- 463
Query: 581 VQRIEEFVKQ 590
+ + +F++Q
Sbjct: 464 -RLLHDFLRQ 472
>sp|B0U2R2|UBIB_XYLFM Probable ubiquinone biosynthesis protein UbiB OS=Xylella fastidiosa
(strain M12) GN=ubiB PE=3 SV=1
Length = 552
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 132/400 (33%), Positives = 201/400 (50%), Gaps = 44/400 (11%)
Query: 184 SEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFS 243
+E +++R R+ LR ++ +LGP F+K GQ+ STR DL P++ DEL LQDRV F
Sbjct: 44 AEIVEQSRGRR----LRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFE 99
Query: 244 PEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLF 303
+ AR I+ LG +E F F+ P+A+AS+ QVH A LH+ +VVVKV RP ++
Sbjct: 100 GQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRREVVVKVLRPDIEHQI 159
Query: 304 DIDLRNLKLIAEYFQRSETFGGPTRDWI---GIYDECATILYQEIDYINEGKNADRFRRD 360
D+ LK +A + + P D I I E T L E+D EG NA RR
Sbjct: 160 SDDIALLKSLATLVEHTH----PNADKIRPREIVAEIETTLAAELDLQREGANASVLRRF 215
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
+ + VP V W +TA +VLTLE + G+ +++ LD G +R ++S+ I + Q+
Sbjct: 216 WEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQV 275
Query: 421 LKTGFFHADPHPGNLAVDLDEA------LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDA 474
+ FFHAD H GN+ VD D A I DFG+MG++ + L + F A++ KD
Sbjct: 276 FRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDY 335
Query: 475 KKVIQ------------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFR 507
+++ + R+ +LEA +P +S LF +A+
Sbjct: 336 RRIAELHVEAGWIPQHVRIEELEAAARSVCEPYFTRPLSQISLAEVLMKLFHVARRYQLT 395
Query: 508 FPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPYAQELL 547
+ + +EG+G LDP+ VA P + +L
Sbjct: 396 LQPQLILLQKTLLNIEGVGRQLDPELDIWVVARPVLERIL 435
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 126/405 (31%), Positives = 213/405 (52%), Gaps = 37/405 (9%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ +LGP F+K GQ+ STRSDL P + +ELA+LQDRVP F + A I+
Sbjct: 53 LREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKK 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL--HNG--EKVVVKVQRPGLKRLFDIDLRNLKLIA 314
++Q+F +FE P+A+AS+ QVH A++ NG V VKV RPG+K + D DL + ++A
Sbjct: 113 LDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMHMMA 172
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+ +R G + + E L+ E+D I E NA + RR+ + V +P V+W
Sbjct: 173 RWVERLSADGKRLKP-RQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPEVYW 231
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
D+ + V+ ++ + GV I++++ L G + ++A + + Q+ + GFFHAD HPGN
Sbjct: 232 DFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 435 LAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPT 490
+ V L+ I DFG++G + + +E L F A + +D K+V + I+ + P+
Sbjct: 292 IMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWVPPS 351
Query: 491 ---GDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LE 523
++ + + A+ + D+P S ++R F T +E
Sbjct: 352 TRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLLNIE 411
Query: 524 GIGNILDPDFSFVKVAAPYAQE-LLDLKQQQQSGTQLVEQIRKQA 567
G+G LDP+ A P+ ++ +LD Q+ +L+ + + A
Sbjct: 412 GLGRQLDPNLDLWSTAKPFLEKWMLDQMGPQRLWRELLAEAPRYA 456
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 199 bits (505), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 202/384 (52%), Gaps = 36/384 (9%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LRE++ +LGP F+K GQ+ STR DL P + +ELA LQDRVP F P+ A I+ P
Sbjct: 53 LREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRP 112
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNGEK-VVVKVQRPGLKRLFDIDLRNLKLIA 314
+ ++F +FE P+A+AS+ QVH AI+ H E+ V VKV RPG+ + D DL ++ +A
Sbjct: 113 VGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMA 172
Query: 315 EYFQRSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFW 374
+ + S + G + E L+ E+D I E NA + RR+ + VR+P + W
Sbjct: 173 GWVE-SLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILW 231
Query: 375 DYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGN 434
D+ +VL +E + GV I++++ L G + Q+A + + Q+ + GFFHAD HPGN
Sbjct: 232 DFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGN 291
Query: 435 LAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEAL 487
+ V L+ I DFG++G + F +E L F A + +D K+V + ++ + A
Sbjct: 292 IQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWVPAD 351
Query: 488 QPTGDMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LE 523
++ S + A+ + D+P + S ++R F T +E
Sbjct: 352 TRINELESAIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIE 411
Query: 524 GIGNILDPDFSFVKVAAPYAQELL 547
G+G LDP+ A P+ ++ +
Sbjct: 412 GLGRQLDPELDLWSTAKPFLEKWM 435
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 199 bits (505), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 203/401 (50%), Gaps = 35/401 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P+ A I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQHAVALIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L +GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKSGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + VP V+WD
Sbjct: 180 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
I D G++G + + ++ L A +++D ++V Q ID + A
Sbjct: 299 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAQTKVN 358
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
+ + + + + ++P + S ++R F T +EG+G
Sbjct: 359 EFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGR 418
Query: 528 ILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQAD 568
L PD A P+ + + +++ S ++ + QA+
Sbjct: 419 QLYPDLDLWSTAKPFLERWM---RERMSPKAVIGNLYNQAE 456
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/496 (30%), Positives = 240/496 (48%), Gaps = 61/496 (12%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++ K+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELSKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGVT 634
P V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 468 PRLVH---SWLKQQVEGRHQIDIRSTELLALDLSLRK---LQTRVVTAITGSGLLVVAAV 521
Query: 635 FTGQGSQIIANGSFIG 650
G + +G ++G
Sbjct: 522 LYG----LHPDGWYLG 533
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/496 (30%), Positives = 240/496 (48%), Gaps = 61/496 (12%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++ K+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELSKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGVT 634
P V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 468 PRLVH---SWLKQQVEGRHQIDIRSTELLALDLSLRK---LQTRVVTAITGSGLLVVAAV 521
Query: 635 FTGQGSQIIANGSFIG 650
G + +G ++G
Sbjct: 522 LYG----LHPDGWYLG 533
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/496 (30%), Positives = 240/496 (48%), Gaps = 61/496 (12%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F E AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLSAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++ K+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELSKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGVT 634
P V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 468 PRLVH---SWLKQQVEGRHQIDIRSTELLALDLSLRK---LQTRVVTAITGSGLLVVAAV 521
Query: 635 FTGQGSQIIANGSFIG 650
G + +G ++G
Sbjct: 522 LYG----LHPDGWYLG 533
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 222/429 (51%), Gaps = 46/429 (10%)
Query: 192 RRKTASWL----RESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKA 247
RR T++ L R ++ LGP F+K GQ+ STR DL P E+ DELA LQDRVP F + A
Sbjct: 41 RRDTSAPLPQRVRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIA 100
Query: 248 RHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILHN-----GEKVVVKVQRPGLKRL 302
R ++ LG +E+LF F+ +P+A+AS+ QVH+A L G +V VKV RPG+ +
Sbjct: 101 RQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPV 160
Query: 303 FDIDLRNLKLIAEYFQRSETFGG--PTRDWIGIYDECATILYQEIDYINEGKNADRFRRD 360
+ DL ++ +A + ++ G R+ + +D+ L+ E+D ++E NA + RR+
Sbjct: 161 IEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKY---LHDELDMMHEAANASQLRRN 217
Query: 361 FRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQI 420
F+ + VP VF+DY++ +VLTLE++ G+ + +++ L G + +++ +E + Q+
Sbjct: 218 FKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQV 277
Query: 421 LKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQR 480
+ GFFHAD HPGN+ V D I DFG++G + + L F A + +D +V
Sbjct: 278 FRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATA 337
Query: 481 LIDLEALQPTGDMSSDLFAIAQ-------DQPFRFPSTFTFVIRAFST------------ 521
I+ P + +L A + ++P S ++R F T
Sbjct: 338 HIE-SGWVPRDTRAEELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQL 396
Query: 522 ---------LEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARS 572
+EG+G LDP+ A P+ + ++ +Q L+ ++ +A +
Sbjct: 397 VLLQKTLLNIEGLGRQLDPELDLWDTAKPFLTKWMN---EQIGWRGLLRTLKHEAPQWAT 453
Query: 573 STMSMPSRV 581
+ ++P ++
Sbjct: 454 TLPTLPRKL 462
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 192/377 (50%), Gaps = 32/377 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P+KA I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPQKAVALIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 120 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKAAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + VP V+WD
Sbjct: 180 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGVPVTDMVTLADQRTDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
I D G++G + + ++ L A +++D ++V Q ID + A
Sbjct: 299 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAHTKVN 358
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
+ + + + + ++P + S ++R F T +EG+G
Sbjct: 359 EFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGR 418
Query: 528 ILDPDFSFVKVAAPYAQ 544
L PD A P+ +
Sbjct: 419 QLYPDLDLWSTAKPFLE 435
>sp|Q3BZ34|UBIB_XANC5 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3
SV=1
Length = 557
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 148/496 (29%), Positives = 240/496 (48%), Gaps = 61/496 (12%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ +LGP F+K GQ+ STR DL P + +EL LQDRV F + AR ++ LG P
Sbjct: 55 LRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLP 114
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAIL---HNG--EKVVVKVQRPGLKRLFDIDLRNLKLI 313
+ F +F+ P+A+AS+ QVH A L NG +VVVKV RP ++R D D+ L +
Sbjct: 115 VSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPDIERQIDADIALLHSL 174
Query: 314 AEYFQRSETFGGPTRDWIGIYDECATI---LYQEIDYINEGKNADRFRRDFRNIKWVRVP 370
A +R+ P D I + A I L E+D EG NA RR + + VP
Sbjct: 175 ATLVERTH----PRADKIRPREVVAEIEGTLAAELDLQREGANASVLRRFWEGSDDLYVP 230
Query: 371 LVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADP 430
V W +TA + LTLE V G+ +++ LD G +R +A++ + + Q+ + FFHAD
Sbjct: 231 EVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNFFHADA 290
Query: 431 HPGNLAVD------LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQ----- 479
H GN+ VD L+ I DFG+MG++ + L + F A++ KD +++ +
Sbjct: 291 HAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAELHVEA 350
Query: 480 -------RLIDLEA----------LQPTGDMS-----SDLFAIAQDQPFRFPSTFTFVIR 517
R+ +LEA +P ++S LF +AQ + +
Sbjct: 351 GWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQLILLQK 410
Query: 518 AFSTLEGIGNILDPDFSFVKVAAPYAQELLDLKQQQQSGTQLVEQIRKQADDARSSTMSM 577
+EG+G LDP VA P + +L +++ S +++ ++ K+ + + M
Sbjct: 411 TLLNIEGVGRQLDPKLDIWAVARPVLERIL---RERYSPRRVLRELGKRLPEIMTHAPDM 467
Query: 578 PSRVQRIEEFVKQLEAGDLKLRVR---VLESERAARKATILQMATMYTVCGGTLLNLGVT 634
P V ++KQ G ++ +R +L + + RK LQ + + G LL +
Sbjct: 468 PRLVH---SWLKQQVEGRHQIDIRSPELLALDLSLRK---LQTRVVTAITGSGLLVVAAV 521
Query: 635 FTGQGSQIIANGSFIG 650
G + +G ++G
Sbjct: 522 LYG----LHPDGWYLG 533
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 194/380 (51%), Gaps = 32/380 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQL STR DL P + DEL LQDRVP F P++A I+++LGA
Sbjct: 59 LRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLLQDRVPPFDPKQAVALIESQLGAK 118
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
+ ++F F+ P+A+AS+ QVH A L GE+VVVKV RPGLK + DL L LIA+ +
Sbjct: 119 VGEVFSRFDVEPLASASVAQVHAARLKTGEEVVVKVVRPGLKPVIAQDLAWLFLIAKGAE 178
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R+ + I + +Y E+D + E NA + RR+F + + VP V+WD
Sbjct: 179 RASADARRLHP-VEIVGDYEKTIYDELDLLREAANASQLRRNFEGSELMYVPQVYWDLCR 237
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + GV + ++ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 238 PKVLVMERIYGVPVTDMATLADQRTDMKLLAERGVEVFFTQVFRHSFFHADMHPGNIFVS 297
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
I D G++G + + ++ L A +++D ++V + ID + A
Sbjct: 298 TVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAELHIDSGWVPAHTKVN 357
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
+ + + + + ++P + S ++R F T +EG+G
Sbjct: 358 EFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGR 417
Query: 528 ILDPDFSFVKVAAPYAQELL 547
L PD A P+ + +
Sbjct: 418 QLYPDLDLWSTAKPFLERWM 437
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 218/446 (48%), Gaps = 42/446 (9%)
Query: 163 VLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSD 222
+L +R+L W +L + + R LR ++ LGP FIK GQ+ STR D
Sbjct: 30 MLPWWLRLLGATLPWRWLPRRKLELTRGAR------LRLALQDLGPIFIKFGQILSTRRD 83
Query: 223 LFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRA 282
L P + +ELA LQD+VP F PE A I+ +LGA IEQ+F FE P+A+AS+ QVH A
Sbjct: 84 LLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAA 143
Query: 283 ILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILY 342
L +GE+VVVKV RP L+ + D+ L ++A +R + + + + +
Sbjct: 144 RLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHP-VEVVSDYEKTIV 202
Query: 343 QEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQG 402
E+D + E NA + RR+F + VP V+WD+ KVL +E + G+ + +L+ L Q
Sbjct: 203 DELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQR 262
Query: 403 YNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD----LDEALIYYDFGMMGEIKSFT 458
+ +A R +E + Q+ + FFHAD HPGN+ V I D G++G +
Sbjct: 263 TDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDED 322
Query: 459 RERLLDLFYAVYEKDAKKVIQRLID---LEALQPTGDMSSDLFAIAQ---DQPFRFPSTF 512
++ L A +++D +KV Q ID + A D + + + + ++P + S
Sbjct: 323 QDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFG 382
Query: 513 TFVIRAFST---------------------LEGIGNILDPDFSFVKVAAPYAQ----ELL 547
++R F T +EG+G L P+ A P+ + E +
Sbjct: 383 QVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERV 442
Query: 548 DLKQQQQSGTQLVEQIRKQADDARSS 573
KQ ++ Q VEQ+ + AR +
Sbjct: 443 SPKQLLRNFQQQVEQVPHLSQMARDT 468
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 218/446 (48%), Gaps = 42/446 (9%)
Query: 163 VLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSD 222
+L +R+L W +L + + R LR ++ LGP FIK GQ+ STR D
Sbjct: 30 MLPWWLRLLGATLPWRWLPRRKLELTRGAR------LRLALQDLGPIFIKFGQILSTRRD 83
Query: 223 LFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRA 282
L P + +ELA LQD+VP F PE A I+ +LGA IEQ+F FE P+A+AS+ QVH A
Sbjct: 84 LLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAA 143
Query: 283 ILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILY 342
L +GE+VVVKV RP L+ + D+ L ++A +R + + + + +
Sbjct: 144 RLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHP-VEVVSDYEKTIV 202
Query: 343 QEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQG 402
E+D + E NA + RR+F + VP V+WD+ KVL +E + G+ + +L+ L Q
Sbjct: 203 DELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQR 262
Query: 403 YNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD----LDEALIYYDFGMMGEIKSFT 458
+ +A R +E + Q+ + FFHAD HPGN+ V I D G++G +
Sbjct: 263 TDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDED 322
Query: 459 RERLLDLFYAVYEKDAKKVIQRLID---LEALQPTGDMSSDLFAIAQ---DQPFRFPSTF 512
++ L A +++D +KV Q ID + A D + + + + ++P + S
Sbjct: 323 QDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFG 382
Query: 513 TFVIRAFST---------------------LEGIGNILDPDFSFVKVAAPYAQ----ELL 547
++R F T +EG+G L P+ A P+ + E +
Sbjct: 383 QVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERV 442
Query: 548 DLKQQQQSGTQLVEQIRKQADDARSS 573
KQ ++ Q VEQ+ + AR +
Sbjct: 443 SPKQLLRNFQQQVEQVPHLSQMARDT 468
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 196 bits (497), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 218/446 (48%), Gaps = 42/446 (9%)
Query: 163 VLSLQIRILFDNAKWAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSD 222
+L +R+L W +L + + R LR ++ LGP FIK GQ+ STR D
Sbjct: 30 MLPWWLRLLGATLPWRWLPRRKLELTRGAR------LRLALQDLGPIFIKFGQILSTRRD 83
Query: 223 LFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRA 282
L P + +ELA LQD+VP F PE A I+ +LGA IEQ+F FE P+A+AS+ QVH A
Sbjct: 84 LLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAA 143
Query: 283 ILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIGIYDECATILY 342
L +GE+VVVKV RP L+ + D+ L ++A +R + + + + +
Sbjct: 144 RLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHP-VEVVSDYEKTIV 202
Query: 343 QEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQG 402
E+D + E NA + RR+F + VP V+WD+ KVL +E + G+ + +L+ L Q
Sbjct: 203 DELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQR 262
Query: 403 YNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD----LDEALIYYDFGMMGEIKSFT 458
+ +A R +E + Q+ + FFHAD HPGN+ V I D G++G +
Sbjct: 263 TDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDED 322
Query: 459 RERLLDLFYAVYEKDAKKVIQRLID---LEALQPTGDMSSDLFAIAQ---DQPFRFPSTF 512
++ L A +++D +KV Q ID + A D + + + + ++P + S
Sbjct: 323 QDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFG 382
Query: 513 TFVIRAFST---------------------LEGIGNILDPDFSFVKVAAPYAQ----ELL 547
++R F T +EG+G L P+ A P+ + E +
Sbjct: 383 QVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLERWMRERV 442
Query: 548 DLKQQQQSGTQLVEQIRKQADDARSS 573
KQ ++ Q VEQ+ + AR +
Sbjct: 443 SPKQLLRNFQQQVEQVPHLSQMARDT 468
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 195 bits (496), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 131/410 (31%), Positives = 206/410 (50%), Gaps = 36/410 (8%)
Query: 199 LRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKARHFIKNELGAP 258
LR ++ LGP FIK GQ+ STR DL P + +ELA LQD+VP F PE A I+ +LGA
Sbjct: 60 LRLALQDLGPIFIKFGQILSTRRDLLPDDIANELAWLQDKVPPFPPELAVKRIEEQLGAK 119
Query: 259 IEQLFKTFEDRPIAAASLGQVHRAILHNGEKVVVKVQRPGLKRLFDIDLRNLKLIAEYFQ 318
IEQ+F FE P+A+AS+ QVH A L +GE+VVVKV RP L+ + D+ L ++A +
Sbjct: 120 IEQVFARFEREPLASASVAQVHAARLKSGEEVVVKVIRPNLEPVIRSDIAWLFILARLAE 179
Query: 319 RSETFGGPTRDWIGIYDECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTA 378
R + + + + + E+D + E NA + RR+F + VP V+WD+
Sbjct: 180 RVSSEARRLHP-VEVVSDYEKTIVDELDLLREAANASQLRRNFEGSPLLYVPQVYWDWCR 238
Query: 379 TKVLTLEYVPGVKINELKALDLQGYNRSQIASRAIEAYLIQILKTGFFHADPHPGNLAVD 438
KVL +E + G+ + +L+ L Q + +A R +E + Q+ + FFHAD HPGN+ V
Sbjct: 239 PKVLVMERIYGIPVTDLETLRDQRTDFKALAERGVEIFFTQVFRDSFFHADMHPGNIFVS 298
Query: 439 ----LDEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLID---LEALQPTG 491
I D G++G + ++ L A +++D +KV Q ID + A
Sbjct: 299 TRAPWSPQYIAVDCGIVGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVPAETKVN 358
Query: 492 DMSSDLFAIAQ---DQPFRFPSTFTFVIRAFST---------------------LEGIGN 527
D + + + + ++P + S ++R F T +EG+G
Sbjct: 359 DFEAAIRTVCEPIFEKPLKDISFGQVLLRLFQTARRFNMEIQPQLVLLQKTLLNIEGLGR 418
Query: 528 ILDPDFSFVKVAAPYAQ----ELLDLKQQQQSGTQLVEQIRKQADDARSS 573
L P+ A P+ + E + KQ ++ Q VEQ+ + AR +
Sbjct: 419 QLYPELDLWATAQPFLERWMRERVSPKQLLRNFQQQVEQVPHLSQMARDT 468
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 202/405 (49%), Gaps = 44/405 (10%)
Query: 177 WAYLGGFSEDKQKNRRRKTASWLRESVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQ 236
+ +L G E+ R R+ LR + LGP+FIK GQ+ + R D+ ++++EL LQ
Sbjct: 152 YDFLVGRDEEVVPFRARQ----LRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQ 207
Query: 237 DRVPAFSPEKARHFIKNELGAPIEQLFKTFEDRPIAAASLGQVHRAILH-NGEKVVVKVQ 295
D VP F E A + I+ ELG P+E +F + IAAASLGQV+RA L GE V +KVQ
Sbjct: 208 DDVPPFPNEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYRATLRATGEDVAIKVQ 267
Query: 296 RPGLKRLFDIDLRNLKLIAEYFQRSETFGGPTRDWIG-----IYDECATILYQEIDYINE 350
RP ++ + DL + +A + G + +G I DE L +E+DY E
Sbjct: 268 RPQIEPIIYRDLFLFRTLASFLN------GFSLQKLGCNAELIVDEFGEKLLEELDYTLE 321
Query: 351 GKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAS 410
+N + F +F++ V++P V+ + +VL +E++ G++ + +A+ G + + +
Sbjct: 322 ARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDGIRCTDPQAIKDAGIDLNGFLT 381
Query: 411 RAIEAYLIQILKTGFFHADPHPGNLAVDLDEALIYYDFGMMGEIKSFTRERLLDLFYAVY 470
+ A L Q+L+ G FH DPHPGN+ D + Y DFG + + ++ L+D
Sbjct: 382 VGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFGNVAVLSQQNKQILIDAVVHAV 441
Query: 471 EKDAKKVIQRLIDLEALQPTGDMS---SDLFAIAQ------------------------D 503
+D ++ L L D+S L AI Q D
Sbjct: 442 NEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAGKGLADFNFRSVTGQFNKLVYD 501
Query: 504 QPFRFPSTFTFVIRAFSTLEGIGNILDPDFSFVKVAAPY-AQELL 547
P R P F+ VIR+ T EGI L PDF F++VA PY A+ LL
Sbjct: 502 FPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLL 546
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,835,351
Number of Sequences: 539616
Number of extensions: 10325810
Number of successful extensions: 29993
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 29198
Number of HSP's gapped (non-prelim): 281
length of query: 675
length of database: 191,569,459
effective HSP length: 124
effective length of query: 551
effective length of database: 124,657,075
effective search space: 68686048325
effective search space used: 68686048325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)