BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005827
(675 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/690 (79%), Positives = 597/690 (86%), Gaps = 33/690 (4%)
Query: 3 LINPNCINSLVFSTNKHRQTNKCRNVFSTSKESSFRLSTAPQ--RSERFST------SIS 54
L+NPN FS N+ R+ + + +++ R A + RS FS S++
Sbjct: 9 LLNPN------FSLNQRRR--RINHAVLNRRDALLRSLNAVELRRSRTFSAVRTSNFSVT 60
Query: 55 ASDASVNGVTTTPAD---------KRSLELVKSSKAMEQLDIERGVCVPFRKYTPETVRN 105
A+ V G +T A +R + + KSS A+EQLDIERGVCVPFRKY+PETVR+
Sbjct: 61 AAATDVGGRNSTDASVMTTAMSGVERGVRVGKSSSALEQLDIERGVCVPFRKYSPETVRS 120
Query: 106 KVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPS 165
KVLESRGAV+SL+SRGVEIVW+LGLYWS LTYD LVGRD+EVVP RARQLRNLLCNLGPS
Sbjct: 121 KVLESRGAVVSLVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPS 180
Query: 166 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 225
FIKAGQVLANRPDI+REDYMNELCILQDDVP FPN+VAFNIIEEELG+PLE +FSKISSQ
Sbjct: 181 FIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQ 240
Query: 226 TIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCN 285
TIAAASLGQVYRATLR TGEDVAIKVQRP IEPIIYRDLFLFRTLASFLNG S+QKLGCN
Sbjct: 241 TIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCN 300
Query: 286 AELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDG 345
AELIVDEFGEKLLEELDYTLEARN+EDFLENFKDDPTVKIP VYK L G RVLVMEWIDG
Sbjct: 301 AELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDG 360
Query: 346 IRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFG 405
IRCTDPQAIK AGID+ GFLTVGVSAALRQLLEFGLFHGDPHPGNIFAM+DGRIAYVDFG
Sbjct: 361 IRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFG 420
Query: 406 NVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSG 465
NVA LSQQNKQILIDAVVHAVNEDY EMANDFTRLGFLAK TDVSPI+PALEAIWQNS+G
Sbjct: 421 NVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAG 480
Query: 466 KGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY 525
KGLADFNFRSVTGQFNKLVY++ IRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY
Sbjct: 481 KGLADFNFRSVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY 540
Query: 526 VAKRLLTDPNPALRERLIQVLFKDNVFQWKRLENLITLAKENVARMSSNPALRVKDMQNL 585
VAKRLLTDPNPALRERLIQVLFKD VFQWKRLENL++LAKENVA+MSSNP LRVK
Sbjct: 541 VAKRLLTDPNPALRERLIQVLFKDGVFQWKRLENLLSLAKENVAKMSSNPNLRVK----- 595
Query: 586 KSLQVPKKLDLTDTIKDGARLFFTDEGIRRQLLLALTEDSKLHIQELVDVYRLVESDIDM 645
+V KLDLTDTIKDGARLF DEGIRR+L+LALTEDSKLH++ELVDVYRLVE ++D+
Sbjct: 596 ---RVESKLDLTDTIKDGARLFLLDEGIRRKLILALTEDSKLHVEELVDVYRLVEDEVDI 652
Query: 646 PSLATEVVRDFPNVVRDLALSWSDSVLSDR 675
P+LA +VV+D PNV RD LSWS+SVLSDR
Sbjct: 653 PTLAMQVVQDLPNVFRDFVLSWSNSVLSDR 682
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/582 (43%), Positives = 366/582 (62%), Gaps = 34/582 (5%)
Query: 96 RKYTPETVRNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQL 155
R+Y + + N R ++ R +E+VWS G + + L +D G+ + RA L
Sbjct: 17 RRYNAQAIANYY---RRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDL 73
Query: 156 RNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPL 215
R LL LGP+FIK GQ L+ RPD+VR D++ EL LQD +P F N +AF ++EE+LG +
Sbjct: 74 RELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKV 133
Query: 216 EAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLN 275
+ + +IS+ +AAASLGQVYRA L +GE+VA+KVQRP + P + DL+L R A
Sbjct: 134 DEAYREISAHPVAAASLGQVYRAMLF-SGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFG 192
Query: 276 GISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGS 335
LG + LIVDEFG KL EE+DY E RN E F ENF D VK+P +Y + S
Sbjct: 193 RFLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQ 252
Query: 336 RVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMR 395
+VL +EWI G + TD I+ AG+D + +GV++ LRQLLE G FH DPHPGN+FA
Sbjct: 253 KVLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATL 312
Query: 396 DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPA 455
DGR+AY+DFG + +L K+ + ++V +N+DY + DF LGFLA TD++PIIPA
Sbjct: 313 DGRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPA 372
Query: 456 LEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPD 515
LE ++ ++ G+ + DFNF+++T F++L+Y+Y R+P +F+L+IRSL+TQEG+ +L P+
Sbjct: 373 LENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPN 432
Query: 516 FKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVFQWKRLENLITLAKENVARMSSNP 575
FK +EVAYPYVA+RLLT +P LR +LI VLFK+ FQW+RLEN++++A+ +
Sbjct: 433 FKIVEVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQWQRLENMLSIARSDT------- 485
Query: 576 ALRVKDMQNLKSLQVPKKLDLTDTIKDGARLFFTDEG--IRRQLLLALTEDSKLHIQELV 633
K DL T + G + F++EG +RRQ+LLALTED +LH E+
Sbjct: 486 -----------------KFDLLPTAQLGLQFLFSEEGLYLRRQILLALTEDDRLHTDEVQ 528
Query: 634 DVYRLVESDIDMPSLATEVVRDFPNVVRDLALSWSDSVLSDR 675
++ LV+ D E+V N VR+ +L+ ++L R
Sbjct: 529 RIWGLVKDDFK----PQELVNVAWNAVREFSLAGVSTILPQR 566
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/475 (44%), Positives = 311/475 (65%), Gaps = 13/475 (2%)
Query: 97 KYTPETV----RNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRA 152
+Y P+ + R + L+ G +I+++ + + LG++W L G+D V +A
Sbjct: 52 EYHPDLIMEFYRKRPLQVLGRLINILFPLLRFI--LGIWWEKLR-----GKDPTVSRAKA 104
Query: 153 RQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELG 212
QLR LL NLGP++IK GQ L+ RPD+V +++EL LQD +PSFPN+VA+ IEEELG
Sbjct: 105 IQLRELLTNLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELG 164
Query: 213 RPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 272
P E +++++S + IAAASLGQVY+ L+ TGE VA+KVQRP + I D+++ R+L S
Sbjct: 165 APAEEIYAELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSL-S 222
Query: 273 FLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRL 332
S+++L + I DE ++ EE++Y EA N E F + + P + +P +Y +
Sbjct: 223 LWARRSVKRLRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQY 282
Query: 333 SGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIF 392
+G RVL MEW++GI+ T+ +AI+ GID + VGV +LRQLLE G FH DPHPGN+
Sbjct: 283 TGRRVLTMEWVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLL 342
Query: 393 AMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPI 452
AM DGR+AY+DFG ++ + + LI+AVVH VN D+ +A D+ +L FL TD+ PI
Sbjct: 343 AMADGRLAYLDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPI 402
Query: 453 IPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTL 512
IPAL ++ N+ G +A+ NF+S+T Q + ++Y + R+P ++L+IRS++T EGI +
Sbjct: 403 IPALGQVFGNALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGI 462
Query: 513 KPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVFQWKRLENLITLAKEN 567
P+FK L AYPY+AKRLLTD + LR L ++LFK+ F+W RLENL+ AK +
Sbjct: 463 DPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNRLENLLRNAKNS 517
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/464 (40%), Positives = 283/464 (60%), Gaps = 4/464 (0%)
Query: 98 YTPETVRNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRN 157
Y+PE + K + R +EI+ +LG + L D G ++ + RA +LR
Sbjct: 96 YSPELIARK---HGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR 152
Query: 158 LLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEA 217
+ LGP+F+K GQ L+ RPD+ DY+ EL LQD +P+FP+ AF IE EL LE
Sbjct: 153 IFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLET 212
Query: 218 VFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGI 277
+FS +S + IAAASLGQVY+A LR +G+ VA+KVQRPGIE I D +L R + +N
Sbjct: 213 IFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY 272
Query: 278 SIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRV 337
+ + + ++DEF ++ +EL+Y EA+N F + + D V +P ++ + +V
Sbjct: 273 -VDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKV 331
Query: 338 LVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDG 397
L MEW++G + + AI+ G+ V + G+ +LRQLLE+G FH DPHPGN+ A DG
Sbjct: 332 LTMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDG 391
Query: 398 RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALE 457
++A++DFG ++E ++ + +I VVH VN DY MA D+ L FL+ DV+PIIPAL
Sbjct: 392 KLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALR 451
Query: 458 AIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFK 517
+ ++ +++ NF+++ + Y Y +P ++L++RSL EG+ P+FK
Sbjct: 452 DFFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFK 511
Query: 518 FLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVFQWKRLENLI 561
L +YPY AKRLLTDPNP LR+ LI++LFKD F+W RLENL+
Sbjct: 512 VLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLL 555
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 332 bits (852), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 169/457 (36%), Positives = 272/457 (59%), Gaps = 19/457 (4%)
Query: 131 YWSNLTY-DCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELC 189
YW L D + R ++ RA +LR LL LGP+++K Q +++RPD++ Y++EL
Sbjct: 98 YWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKIAQAVSSRPDLIPPIYLDELS 157
Query: 190 ILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAI 249
+LQD + F +VAFN+IE+ELG P++ +FS+IS + +AAASLGQVY+A LR +G+ VA+
Sbjct: 158 LLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAAASLGQVYQARLRRSGKVVAV 217
Query: 250 KVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARN 309
KVQRPG+ I D + R +A + + + E +VDE+ L +E+DY EA+N
Sbjct: 218 KVQRPGVRAAIALDTLILRYIAGLIKKAG--RFNSDLEAVVDEWATSLFKEMDYLNEAQN 275
Query: 310 MEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGV 369
F + + V +P++Y S S+VLVMEW++G + + + + VGV
Sbjct: 276 GIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNEVNDLY--------LVEVGV 327
Query: 370 SAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNED 429
+ QLLE+G +H DPHPGN DG++AY+DFG + + + + ++A +H VN D
Sbjct: 328 YCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDFRPELRDGFMEACLHLVNRD 387
Query: 430 YAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRI 489
+ +A DF LG L + S + AL ++Q++ +G+ + +F + G K +Y ++
Sbjct: 388 FKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRNISFGDLLGDLGKTMYRFKF 447
Query: 490 RIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKD 549
RIP FSLVIRSL EGI + P++K L YP++A+++LTD +P L+ L +L+++
Sbjct: 448 RIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKILTDSSPQLKSSLQNLLYEE 507
Query: 550 NVFQWKRLENLIT--------LAKENVARMSSNPALR 578
VF+ RLE+L++ L ++ V SN A++
Sbjct: 508 GVFRIDRLESLLSESLRTETALVQKPVVGTESNIAMK 544
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 248 bits (634), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 140/419 (33%), Positives = 228/419 (54%), Gaps = 13/419 (3%)
Query: 112 GAVISLMSRGVEIVWSLGLYWS---NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIK 168
G V++L+ + W G WS T + L R + +A+ +R L +LGP+FIK
Sbjct: 50 GFVLTLLYQ----FWLNGKKWSYAGGYTEEKLQQRRRR----QAKWIRENLLSLGPTFIK 101
Query: 169 AGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIA 228
GQ+ + R D+ +Y+ EL LQD+VP+F + A IIEEELG+P+ ++ +A
Sbjct: 102 VGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQAAGIIEEELGKPIAKLYRSFDPVPLA 161
Query: 229 AASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAEL 288
AASLGQV++A L TGEDV +KVQRPG++ + DL + + +A + G +
Sbjct: 162 AASLGQVHKAQL-HTGEDVVVKVQRPGLKKLFTIDLAILKKIAQYFQNHPKWGRGRDWNG 220
Query: 289 IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRC 348
I +E + L +E DY E R+ + F NF+ + VK+PRVY R + +++L +E++ GI+
Sbjct: 221 IYEECCKILWQETDYLREGRSADTFRRNFRGEDWVKVPRVYWRYTSTQILTLEYLPGIKI 280
Query: 349 TDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI-FAMRDGRIAYVDFGNV 407
+ A++ AG++ +G A L QLL G FH DPHPGN+ + G + + DFG +
Sbjct: 281 SHYDALEAAGLERKELAQLGARAYLFQLLNHGFFHADPHPGNLAVSPEAGELIFYDFGMM 340
Query: 408 AELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKG 467
E++ K L+D + ++ + N LG L + D+ PI +++ + N K
Sbjct: 341 GEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGALKETEDMGPIRRSVQFLLDNFMDKP 400
Query: 468 LADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYV 526
+ + ++ ++ Y+ R P F+ V+R+ T EG+ L PDF F+ VA P+
Sbjct: 401 FEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAFSTLEGVGKGLDPDFNFMAVAQPFA 459
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 215/427 (50%), Gaps = 9/427 (2%)
Query: 122 VEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVR 181
V +++ L W LT R + RA+ L L LGP+FIK GQ L+ R DI+
Sbjct: 32 VFLLFVFFLSWDRLT----APRSAQRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIP 87
Query: 182 EDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR 241
+Y+ LQD VP F ++ A +IE+EL ++ +F + +A+ASLGQV+RA L
Sbjct: 88 AEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVL- 146
Query: 242 ETGEDVAIKVQRPGIEPIIYRDLFLF----RTLASFLNGISIQKLGCNAELIVDEFGEKL 297
TGE V +KVQRPG++ ++ D L R +L G E I EF L
Sbjct: 147 PTGEAVVVKVQRPGLDSLLNLDFELLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLL 206
Query: 298 LEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGA 357
E+DY E +N E F +NF D P V++P +Y + + VL +E++ GI+ D QA++ A
Sbjct: 207 FLEIDYIHEGKNAERFRQNFADYPRVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETA 266
Query: 358 GIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQI 417
GI++ + G+ A L+QLL G F DPHPGN+ G + + DFG +AE+ K
Sbjct: 267 GINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQ 326
Query: 418 LIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVT 477
++ + +D ++ +G + D+SPI + + N K + F V
Sbjct: 327 MVQTFFAVLRKDTNQVLEALIYMGLVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVG 386
Query: 478 GQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPA 537
+ + R+P + + +++S+ T +GI L P + + + P++ + P +
Sbjct: 387 EEVYAMFQQQPFRLPPQMTFILKSISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRS 446
Query: 538 LRERLIQ 544
L L+Q
Sbjct: 447 LAMALLQ 453
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 202/395 (51%), Gaps = 8/395 (2%)
Query: 139 CLVGRDKEV-VPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPS 197
C V RD +P R +R L +LGP F+K GQVL+ R D++ +Y +EL +LQD VP
Sbjct: 38 CPVRRDTSAPLPQR---VRLALESLGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPP 94
Query: 198 FPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRET----GEDVAIKVQR 253
F +A ++E LGR +E +F + +A+AS+ QV++A LR+ G +VA+KV R
Sbjct: 95 FDGDIARQVVERSLGRKVEELFVDFDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLR 154
Query: 254 PGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDF 313
PGI P+I +DL L RTLA ++ + +V EF + L +ELD EA N
Sbjct: 155 PGILPVIEQDLSLMRTLAGWVEKLFADGKRLKPREVVAEFDKYLHDELDMMHEAANASQL 214
Query: 314 LENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAAL 373
NFK + +P V+ S VL +EW+ GI + ++ AG+D+ GV
Sbjct: 215 RRNFKGSDMLIVPEVFYDYSSREVLTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFF 274
Query: 374 RQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEM 433
Q+ G FH D HPGNIF DGR +DFG V L+ +K L + N DY +
Sbjct: 275 TQVFRHGFFHADMHPGNIFVAADGRYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRV 334
Query: 434 ANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPE 493
A G++ + T + A+ + + K L++ +F V + + + + I
Sbjct: 335 ATAHIESGWVPRDTRAEELEAAVRTVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQP 394
Query: 494 RFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAK 528
+ L+ ++LL EG+ L P+ + A P++ K
Sbjct: 395 QLVLLQKTLLNIEGLGRQLDPELDLWDTAKPFLTK 429
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 1/379 (0%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP FIK GQVL+ RPD++ DY EL LQD VP F +++ IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
G+ +E ++++ ++ IA+AS+ QV++A L +GE VA+KV RP + P+I +DL L R A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
++ + +V EF + L +ELD EA N NF++ + +P+V+
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229
Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
S VL +EW+DG +D +K GID+ GV Q+ G FH D HPGNI
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 392 FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSP 451
D R +DFG V L+ +K+ L + N DY +A G++ T
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 452 IIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFT 511
+ A+ A+ + K ++ +F V + ++ + + I + L+ ++LL EG+
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 512 LKPDFKFLEVAYPYVAKRL 530
L PD + A P++ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 206 bits (523), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 1/379 (0%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP FIK GQVL+ RPD++ DY EL LQD VP F +++ IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
G+ +E ++++ ++ IA+AS+ QV++A L +GE VA+KV RP + P+I +DL L R A
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169
Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
+++ + +V EF + L +ELD EA N NF + + +P+V+
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229
Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
S VL +EW+DG D +K GID+ GV Q+ G FH D HPGNI
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 392 FAMRDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSP 451
D R +DFG V L+ +K+ L + N DY +A G++ T
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 452 IIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFT 511
+ A+ A+ + K ++ +F V + ++ + + I + L+ ++LL EG+
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 512 LKPDFKFLEVAYPYVAKRL 530
L PD + A P++ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 200 bits (508), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 541
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 542 L-IQVLFKDNVFQWKRLENLITLAKENVARMSSNPA 576
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 541
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 542 L-IQVLFKDNVFQWKRLENLITLAKENVARMSSNPA 576
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGATLPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 541
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 542 L-IQVLFKDNVFQWKRLENLITLAKENVARMSSNPA 576
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 199 bits (506), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 228/456 (50%), Gaps = 16/456 (3%)
Query: 126 WSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYM 185
W L L + L + L R E+ R +LR L +LGP FIK GQ+L+ R D++ +D
Sbjct: 33 WWLRLLGAALPWRWLPRRKLELT--RGARLRLALQDLGPIFIKFGQILSTRRDLLPDDIA 90
Query: 186 NELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGE 245
NEL LQD VP FP ++A IEE+LG +E VF++ + +A+AS+ QV+ A L+ +GE
Sbjct: 91 NELAWLQDKVPPFPPELAVKRIEEQLGAKIEQVFARFEREPLASASVAQVHAARLK-SGE 149
Query: 246 DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTL 305
+V +KV RP +EP+I D+ LA +S + + +V ++ + +++ELD
Sbjct: 150 EVVVKVIRPNLEPVIRSDIAWLFILARLAERVSSEARRLHPVEVVSDYEKTIVDELDLLR 209
Query: 306 EARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFL 365
EA N NF+ P + +P+VY +VLVME I GI TD + ++ D
Sbjct: 210 EAANASQLRRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIPVTDLETLRDQRTDFKALA 269
Query: 366 TVGVSAALRQLLEFGLFHGDPHPGNIF----AMRDGRIAYVDFGNVAELSQQNKQILIDA 421
GV Q+ FH D HPGNIF A + VD G V L+ +++ L
Sbjct: 270 ERGVEIFFTQVFRDSFFHADMHPGNIFVSTRAPWSPQYIAVDCGIVGSLTDEDQDYLARN 329
Query: 422 VVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFN 481
++ DY ++A G++ T V+ A+ + + K L D +F V +
Sbjct: 330 LIAFFKRDYRKVAQLHIDSGWVPAETKVNDFEAAIRTVCEPIFEKPLKDISFGQVLLRLF 389
Query: 482 KLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRER 541
+ + + I + L+ ++LL EG+ L P+ A P++ + +RER
Sbjct: 390 QTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATAQPFLER--------WMRER 441
Query: 542 L-IQVLFKDNVFQWKRLENLITLAKENVARMSSNPA 576
+ + L ++ Q +++ +L +A++ + R+S A
Sbjct: 442 VSPKQLLRNFQQQVEQVPHLSQMARDTLERLSQPHA 477
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 195 bits (496), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 189/385 (49%), Gaps = 7/385 (1%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R +LR L LGP F+K GQVL+ R D++ D +EL LQD VP F ++A I+E
Sbjct: 49 RGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAAIVERS 108
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLF 267
LG+PL A+F + +A+AS+ QV+ ATLR + G +VA+KV RPG+ P+I DL L
Sbjct: 109 LGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDSDLALM 168
Query: 268 RTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
R +A+++ + +V EF + L +ELD EA N NF + +P
Sbjct: 169 RDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSELLLVPE 228
Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
V+ S V VME + G+R + ++ AG+D GV Q+ G FH D H
Sbjct: 229 VFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFFHADMH 288
Query: 388 PGNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
PGNI GR +DFG V LS+ +K L + DY +A G+
Sbjct: 289 PGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHVESGWA 348
Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
+ T V + A+ A + + L + + V + + + + + + L+ ++LL
Sbjct: 349 PEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLLQKTLL 408
Query: 504 TQEGICFTLKPDFKFLEVAYPYVAK 528
EG+ L PD + A P++ +
Sbjct: 409 NVEGLGRQLDPDLDLWKTAKPFLER 433
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 196/398 (49%), Gaps = 5/398 (1%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R +LR+ LGP FIK GQ+L+ R D++ D EL +LQD VPSF Q+A IE+
Sbjct: 53 RGARLRHAFEGLGPVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQA 112
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
LG+P+EA+F+ Q +A+AS+ QV+ A L+E ++ IKV RP I+P+I D+ L R
Sbjct: 113 LGQPIEALFADFDQQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLC 172
Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
A + I +++E+ LL+EL+ EA N NF++ + +P VY
Sbjct: 173 AKIV-AFLIPNNRLRPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYS 231
Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
VLVME I GI +D A++ G D+ GV Q+ FH D HPGN
Sbjct: 232 DYCRESVLVMERIYGIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGN 291
Query: 391 IFAM----RDGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
+F D + +D G V L++Q+K+ L + + N DY ++A + G++
Sbjct: 292 VFVSYEHPHDPQWIGIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPD 351
Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
T V AL + + K LA+ +F V + + + + L+ ++LL E
Sbjct: 352 TKVEEFESALRTVLEPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIE 411
Query: 507 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQ 544
G+ L P + A P++ + P R I+
Sbjct: 412 GLGRHLYPQLDLWQTAKPFLEHWMRQQIGPKAAWRAIK 449
>sp|Q3KJC7|UBIB_PSEPF Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1
Length = 534
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 215/431 (49%), Gaps = 14/431 (3%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R +LR L +LGP FIK GQ+L+ R D++ ED +EL LQD VP F +Q++ +IEE+
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMRLQDRVPPFDSQLSVKLIEEQ 114
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
LG+ + VFS+ + +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL L
Sbjct: 115 LGKKISEVFSRFDVEPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
A +S + +V ++ + + +ELD EA N NF+ P + +P+VY
Sbjct: 174 ARAAEKVSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYW 233
Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
+VLVME I GI+ TD + D+ GV Q+ FH D HPGN
Sbjct: 234 DWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 391 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
IF + +D G V L+ +++ L + DY +A G++
Sbjct: 294 IFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAE 353
Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
T ++ A+ + + K L D +F V + + + + + + L+ ++LL E
Sbjct: 354 TKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIE 413
Query: 507 GICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNV-FQWKRLENLITLAK 565
G+ L PD A P++ + +RER+ NV Q+++L +L +A+
Sbjct: 414 GLGRQLYPDLDLWNTAQPFLER--------WMRERVSPKALLGNVQSQFEQLPHLANMAR 465
Query: 566 ENVARMSSNPA 576
+ + RMS A
Sbjct: 466 DLLERMSQPHA 476
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 206/442 (46%), Gaps = 21/442 (4%)
Query: 115 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCN 161
+S +RG+ IVW + Y W + K P R ++LR L +
Sbjct: 1 MSRFARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALES 59
Query: 162 LGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSK 221
LGP F+K GQVL+ R D++ D +EL +LQD VP F VA IE RP+ VF
Sbjct: 60 LGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVS 119
Query: 222 ISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
Q +A+AS+ QV+ A +R+ +VA+KV RPG+ P+I +DL L R +A ++ +S
Sbjct: 120 FDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLS 179
Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
+V EF L +ELD EA N N + V IP V+ + VL
Sbjct: 180 ADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVL 239
Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD-- 396
VME + G+ + ++ AG+D+ GV+ Q+ G FH D HPGNI
Sbjct: 240 VMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPE 299
Query: 397 --GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIP 454
GR +DFG V L++ +K+ L DY +A G++ T V+ +
Sbjct: 300 TFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEA 359
Query: 455 ALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKP 514
A+ + + + L + + V + + +++ I + L+ ++LL EG+ L P
Sbjct: 360 AIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 515 DFKFLEVAYPYVAKRLLTDPNP 536
D A P++ K +L P
Sbjct: 420 DLDLWSTAKPFLEKWMLDQLGP 441
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 205/442 (46%), Gaps = 21/442 (4%)
Query: 115 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCN 161
+S +RG+ IVW + Y W + K P R ++LR L +
Sbjct: 1 MSRFARGITIVWVVLRYGLDELVLSTFRQPWLRAVTRVITFGRKLDAP-RGQRLREALES 59
Query: 162 LGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSK 221
LGP F+K GQVL+ R D++ D +EL +LQD VP F VA IE RP+ VF
Sbjct: 60 LGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERAFRRPIGEVFVS 119
Query: 222 ISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
Q +A+AS+ QV+ A +R+ +VA+KV RPG+ P+I +DL L R +A ++ +S
Sbjct: 120 FDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALMRMMAGWVESLS 179
Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
+V EF L +ELD EA N N + V IP V+ + VL
Sbjct: 180 ADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLVLIPEVFWDFCHAEVL 239
Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD-- 396
VME + G+ ++ AG+D+ GV+ Q+ G FH D HPGNI
Sbjct: 240 VMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPE 299
Query: 397 --GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIP 454
GR +DFG V L++ +K+ L DY +A G++ T V+ +
Sbjct: 300 TFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIESGWVPAHTRVNELEA 359
Query: 455 ALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKP 514
A+ + + + L + + V + + +++ I + L+ ++LL EG+ L P
Sbjct: 360 AIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 515 DFKFLEVAYPYVAKRLLTDPNP 536
D A P++ K +L P
Sbjct: 420 DLDLWSTAKPFLEKWMLDQLGP 441
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 191 bits (486), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 211/419 (50%), Gaps = 41/419 (9%)
Query: 109 ESRGAVIS-LMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFI 167
+ RG +I L+S G W Y + L VG + P+ L +L LGP +I
Sbjct: 9 DRRGEIIKVLLSNG----WD---YMNGLLTLGKVGEPQIPTPEV---LTKILVELGPFYI 58
Query: 168 KAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTI 227
K GQ+L+ RPD++ Y+N L LQ +VP P ++++ E +PL F +I S+ I
Sbjct: 59 KLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQPLGETFQEIESEPI 118
Query: 228 AAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAE 287
AA S+GQ++RA L ++GE VAIKV+RPGI+ I+ +D L + +A L ++ + G N +
Sbjct: 119 AAGSIGQIHRAVL-QSGETVAIKVKRPGIDVIVEQDSLLIKDVAELL---ALTEFGQNYD 174
Query: 288 LI--VDEFGEKLLEELDYTLEARNMEDFLENFKD----DPT-VKIPRVYKRLSGSRVLVM 340
++ DEF + + EL++ EA + N DP + IP+VY L+ + LV+
Sbjct: 175 IVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPKVYWELTNQKFLVL 234
Query: 341 EWIDGIRC-----TDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMR 395
EW+DG+ T P + K T+ A +QL G FH DPHPGNIF +
Sbjct: 235 EWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYVDGFFHADPHPGNIFYLA 294
Query: 396 DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNED-------YAEMANDFTRLGFLAKGTD 448
DGR+A +D G V L + +Q+L + ++ V+ D E++ R+ F D
Sbjct: 295 DGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSESVGRVNFQRLEVD 354
Query: 449 VSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 507
E + + L++FNF V +F ++ ++++P L + L EG
Sbjct: 355 Y-------ERMLRKYYDLSLSEFNFSEVVYEFLRIARVNKLKVPACLGLYAKCLANLEG 406
>sp|B1XWR5|UBIB_LEPCP Probable ubiquinone biosynthesis protein UbiB OS=Leptothrix
cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ubiB
PE=3 SV=1
Length = 522
Score = 190 bits (482), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 5/382 (1%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R +LR L LGP F+K GQVL+ R D++ D NEL LQD VP FP+ V+ + +
Sbjct: 49 RGVRLRMALERLGPIFVKFGQVLSTRRDLIPHDIANELAKLQDRVPPFPSDVSRAAVVQS 108
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
LGRP+E VF+ + +A+AS+ QV+ L + G +VA+KV RP + II DL L R
Sbjct: 109 LGRPIEEVFASFDADPVASASIAQVHFGVLHD-GREVAVKVLRPNVLNIIEADLALLRVA 167
Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
A++L +S +V EF L +ELD EA N N + +P +
Sbjct: 168 AAWLERLSPDGRRLRPREVVAEFDNYLHDELDLGREAANAAQLRRNMGGLDLIMLPEMIW 227
Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
LS + VLVME + G+ + + ++ AGID+ GV+ Q+ G FH D HPGN
Sbjct: 228 DLSSAEVLVMERMHGVPISQIETLRAAGIDIPKLARDGVTIFFTQVFRDGFFHADMHPGN 287
Query: 391 IFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
I GR +DFG V L ++K+ L + DY +A G++
Sbjct: 288 IMVSTAPATFGRYIALDFGIVGTLDSRDKEYLAQNFLAFFRRDYRRVAELHIESGWVPAS 347
Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
T V + A+ A+ + + L D + V + + + + I + L+ ++LL E
Sbjct: 348 TRVDELEGAVRAVCEPHFDRPLKDISLGQVLLRLFQTSRRFNVEIQPQLVLLQKTLLNVE 407
Query: 507 GICFTLKPDFKFLEVAYPYVAK 528
G+ L P+ + A P++ +
Sbjct: 408 GLGRQLDPELDLWQTAKPFLER 429
>sp|Q4KJL4|UBIB_PSEF5 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3
SV=1
Length = 534
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 216/436 (49%), Gaps = 24/436 (5%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R +LR L +LGP FIK GQ+L+ R D++ ED +EL +LQD VP F +Q + +IE +
Sbjct: 55 RGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQKSVALIEAQ 114
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
LG+ + VFS+ + +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL L
Sbjct: 115 LGKKISDVFSRFDIEPLASASVAQVHAAKLK-TGEEVVVKVIRPGLKPIIAQDLAWLFIL 173
Query: 271 ASFLNGISIQKLGCNAEL-----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKI 325
A + +KL +A L +V ++ + + +ELD EA N NF+ P + +
Sbjct: 174 AR-----AAEKLSADARLLHPVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYV 228
Query: 326 PRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGD 385
P+VY +VLVME I GI+ TD + D+ GV Q+ FH D
Sbjct: 229 PQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHAD 288
Query: 386 PHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLG 441
HPGNIF + +D G V L+ +++ L + DY +A G
Sbjct: 289 MHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG 348
Query: 442 FLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRS 501
++ T ++ A+ + + K L D +F V + + + + + + L+ ++
Sbjct: 349 WVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKT 408
Query: 502 LLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVF-QWKRLENL 560
LL EG+ L PD A P++ + +RER+ N+ Q ++L +L
Sbjct: 409 LLNIEGLGRQLYPDLDLWNTAQPFLER--------WMRERVSPKAVLGNIHSQIEQLPHL 460
Query: 561 ITLAKENVARMSSNPA 576
+ ++ + RMS A
Sbjct: 461 ANMTRDLLERMSQPHA 476
>sp|Q48PJ6|UBIB_PSE14 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=ubiB PE=3 SV=1
Length = 539
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 16/447 (3%)
Query: 135 LTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDD 194
L + L R E+ R + R L +LGP FIK GQ+L+ R D++ ED +EL +LQD
Sbjct: 41 LPWRWLPRRKSEL--SRGVRFRLALQDLGPIFIKFGQLLSTRRDLLPEDIADELMLLQDR 98
Query: 195 VPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRP 254
VP F QVA N+IEE+LG + VFS+ +A+AS+ QV+ A L+ TGE+V +KV RP
Sbjct: 99 VPPFDQQVAINLIEEQLGARICDVFSRFDETPLASASVAQVHAACLK-TGEEVVVKVVRP 157
Query: 255 GIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFL 314
G++P+I +DL LA +S + +V ++ + + +ELD EA N
Sbjct: 158 GLKPVIGQDLAWLFILARMAERVSADARLLHPVQVVMDYEKTIYDELDLLREAANSSQLR 217
Query: 315 ENFKDDPTVKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALR 374
NF+ + +P+VY +VLVME I G++ TD + D+ GV
Sbjct: 218 RNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFT 277
Query: 375 QLLEFGLFHGDPHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDY 430
Q+ FH D HPGNIF + +D G V L+ +++ L + DY
Sbjct: 278 QIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDY 337
Query: 431 AEMANDFTRLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIR 490
+A G++ T ++ A+ + + K L D +F V + + + +
Sbjct: 338 RRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNME 397
Query: 491 IPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLI-QVLFKD 549
+ + L+ ++LL EG+ L PD A PY+ + +RER+ + LF +
Sbjct: 398 VQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYLER--------WMRERVSPKTLFGN 449
Query: 550 NVFQWKRLENLITLAKENVARMSSNPA 576
Q ++L ++ + ++ + RMS A
Sbjct: 450 LQSQVEQLPHIAGMTRDLLERMSRPHA 476
>sp|C3K8U2|UBIB_PSEFS Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiB PE=3 SV=1
Length = 534
Score = 188 bits (478), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 214/437 (48%), Gaps = 14/437 (3%)
Query: 145 KEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAF 204
K++ R +LR L +LGP FIK GQ+L+ R D++ ED +EL +LQD VP F +Q +
Sbjct: 49 KQLELSRGARLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELMLLQDRVPPFDSQQSM 108
Query: 205 NIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDL 264
+IEE+LG+ + VFS+ +A+AS+ QV+ A L+ TGE+V +KV RPG++PII +DL
Sbjct: 109 KLIEEQLGKKISEVFSRFDVDPLASASVAQVHAAQLK-TGEEVVVKVIRPGLKPIIGQDL 167
Query: 265 FLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVK 324
LA S + +V ++ + + +ELD EA N NF+ P +
Sbjct: 168 AWLFILARAAERFSADARLLHPVDVVADYEKTIYDELDLLREAANASQLKRNFEGSPLLY 227
Query: 325 IPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHG 384
+P+VY +VLVME I G++ TD + D+ GV Q+ FH
Sbjct: 228 VPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHA 287
Query: 385 DPHPGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRL 440
D HPGNIF + +D G V L+ +++ L + DY +A
Sbjct: 288 DMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDS 347
Query: 441 GFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIR 500
G++ T ++ A+ + + K L D +F V + + + + + + L+ +
Sbjct: 348 GWVPAETKLNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQK 407
Query: 501 SLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDNVF-QWKRLEN 559
+LL EG+ L PD A P++ + +RER+ N+ Q ++L +
Sbjct: 408 TLLNIEGLGRQLYPDLDLWNTAQPFLER--------WMRERMSPKTVLGNLHSQMEQLPH 459
Query: 560 LITLAKENVARMSSNPA 576
L + ++ + RMS A
Sbjct: 460 LANMTRDLLERMSQPHA 476
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 201/389 (51%), Gaps = 4/389 (1%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP+F + +A IE EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAEL 113
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
P++++F +A+AS+ QV+ ATL+ G+ V +KV RP +E I DL L +A
Sbjct: 114 KAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVA 173
Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
+++N + + +V+++ +L EL+ LEA N NF D + IP VY+
Sbjct: 174 TWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSDALYIPYVYEE 233
Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
L R++VME IDGI +D +A+ G ++ GV Q+ FH D HPGNI
Sbjct: 234 LCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNI 293
Query: 392 FAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGT 447
F R+ Y+ D G + L++++K+ L + + N DY +A + G+++ T
Sbjct: 294 FISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLYVESGWVSADT 353
Query: 448 DVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 507
D+ A++ + + K L + +F V + + + I + + L+ ++LL EG
Sbjct: 354 DILAFEQAVKLVCEPMFNKPLNEISFGHVLLELFRTARRFDIVVQPQLVLLEKTLLYIEG 413
Query: 508 ICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
+ L P + A P++ + + P
Sbjct: 414 LGRQLYPQLDLWQTAKPFLERWMAEQVGP 442
>sp|B8CI04|UBIB_SHEPW Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1
Length = 549
Score = 188 bits (477), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 196/383 (51%), Gaps = 12/383 (3%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A IE+EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEQEL 113
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
P+E F +A+AS+ QV+ ATL+ G V +KV RP +E ++ D+ L A
Sbjct: 114 NAPIETYFDDFEDTPLASASISQVHTATLKSNGAKVVLKVLRPDVEQKVHADIQLMSQAA 173
Query: 272 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
+FL + LG N L +V+++ + EL+ LEA N NF D + IP
Sbjct: 174 NFLESL----LGANNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFLDSNALYIPY 229
Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
+Y+ L +R++VME IDG+ +D A++ G ++ GV Q+ FH D H
Sbjct: 230 MYEELCFTRLIVMERIDGVPVSDKAALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMH 289
Query: 388 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
PGNIF R D +D G + L+ ++K+ L + + N DY +A + G++
Sbjct: 290 PGNIFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWV 349
Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
+ TD+S A++ + + K L + +F V + + + + + + L+ ++LL
Sbjct: 350 SADTDISAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409
Query: 504 TQEGICFTLKPDFKFLEVAYPYV 526
EG+ L P + A P++
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFL 432
>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 200/393 (50%), Gaps = 12/393 (3%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A IE EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARASIETEL 113
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
P+E+ F+ +A+AS+ QV+ ATL+ G V +K+ RP +E ++ DL L A
Sbjct: 114 NAPIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHADLLLMSQAA 173
Query: 272 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
FL + LG N L +V+++ + EL+ LEA N NF D + IP
Sbjct: 174 DFLETL----LGTNNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNALYIPY 229
Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
+Y+ L +R++VME IDGI +D A++ G ++ GV Q+ FH D H
Sbjct: 230 MYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMH 289
Query: 388 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
PGNIF R D +D G + L++++K+ L + + N DY +A + G++
Sbjct: 290 PGNIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIESGWV 349
Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
+ TDV+ A++ + + K L + +F V + + + + + + L+ ++LL
Sbjct: 350 SPDTDVAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409
Query: 504 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
EG+ L P + A P++ + + P
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 206/442 (46%), Gaps = 21/442 (4%)
Query: 115 ISLMSRGVEIVWSLGLY-------------WSNLTYDCLVGRDKEVVPDRARQLRNLLCN 161
+S + RG IVW + Y W L +V +++ R ++LR L
Sbjct: 1 MSRLFRGATIVWVVLRYGLDELVLTSFQKPWLRLLAR-IVSFGRKLDAPRGQRLREALER 59
Query: 162 LGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSK 221
LGP F+K GQVL+ R D++ D NEL +LQD VP F VA IE RP+ VF
Sbjct: 60 LGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERAFRRPVGEVFVS 119
Query: 222 ISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGIS 278
+A+AS+ QV+ A +R+ +VA+KV RPG+ P+I DL L R +A ++ +S
Sbjct: 120 FERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLMRAMAGWVESLS 179
Query: 279 IQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVL 338
+V EF L +ELD EA N N + V+IP + VL
Sbjct: 180 ADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPEILWDFCHPEVL 239
Query: 339 VMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD-- 396
VME + G+ + + ++ AG+D+ GV+ Q+ G FH D HPGNI +
Sbjct: 240 VMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLEPG 299
Query: 397 --GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIP 454
GR +DFG V L++ +K+ L DY +A G++ T ++ +
Sbjct: 300 SFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWVPADTRINELES 359
Query: 455 ALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKP 514
A+ A+ + + L + + V + + + + I + L+ ++LL EG+ L P
Sbjct: 360 AIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDP 419
Query: 515 DFKFLEVAYPYVAKRLLTDPNP 536
+ A P++ K +L P
Sbjct: 420 ELDLWSTAKPFLEKWMLDQMGP 441
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 187 bits (475), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 192/393 (48%), Gaps = 7/393 (1%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R ++LR L LGP F+K GQVL+ R D++ D EL LQD VP F +Q+A + IE
Sbjct: 49 RGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERA 108
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLF 267
+ L+ +F + +A+AS+ QV+ A + + DVA+KV RPG++ +I +DL L
Sbjct: 109 FRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALM 168
Query: 268 RTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
+A ++ +S +V EF L +ELD EA N N + V IP
Sbjct: 169 HMMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLDLVLIPE 228
Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
VY S V+VM+ + G+ + + ++ AG+D+ GV+ Q+ G FH D H
Sbjct: 229 VYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGFFHADMH 288
Query: 388 PGNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
PGNI + GR +DFG V L++ +K+ L DY +A G++
Sbjct: 289 PGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELHIESGWV 348
Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
T V + A+ A+ + + LA+ + V + + +++ I + L+ ++LL
Sbjct: 349 PPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVLLQKTLL 408
Query: 504 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
EG+ L P+ A P++ K +L P
Sbjct: 409 NIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGP 441
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 216/441 (48%), Gaps = 18/441 (4%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
R +LR L +LGP FIK GQ+L+ R D++ D +EL LQD VP FP A +IE +
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
LG P+ +F++ SQ +A+AS+ QV+ A L+ +GE+V +KV RPG++P+I +DL L
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWLFLL 173
Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
A S +V ++ + + +ELD EA N NF+ P + +P+VY
Sbjct: 174 ARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVPQVYW 233
Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
L +VLVME I G+ TD + D+ GV Q+ FH D HPGN
Sbjct: 234 DLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADMHPGN 293
Query: 391 IFAMRDGRIAY------VDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
IF R + +D G + L+ +++ L ++ DY ++A G++
Sbjct: 294 IFV--STRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGWVP 351
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V+ A+ + + K L D +F + + + + + + + L+ ++LL
Sbjct: 352 ADTKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLN 411
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQV-LFKDNVFQWKRLENLITL 563
EG+ L PD A P++ + +RER+ + L ++ Q +++ +L +
Sbjct: 412 IEGLGRQLYPDLDLWSTAQPFLER--------WMRERVSPLHLLRNLQQQAEQVPHLSQI 463
Query: 564 AKENVARMSSNPALRVKDMQN 584
A++ + R+ R D ++
Sbjct: 464 ARDALERLQRPEPPRESDARD 484
>sp|Q0HE99|UBIB_SHESM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-4) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 197/398 (49%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F +
Sbjct: 45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E+ F + +A+AS+ QV+ ATL+ G+ V +KV RP +E I
Sbjct: 105 ARQAIETELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A ++ + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLLLMSQTAKIIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ IP VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF RD +D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|Q0HZP9|UBIB_SHESR Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain MR-7) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 197/398 (49%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F +
Sbjct: 45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E+ F + +A+AS+ QV+ ATL+ G+ V +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A ++ + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLLLMSQTAKVIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ IP VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF RD +D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|A8H968|UBIB_SHEPA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=ubiB PE=3
SV=1
Length = 549
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 198/393 (50%), Gaps = 12/393 (3%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
+L+ + LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A IE+EL
Sbjct: 54 GERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEKEL 113
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
P+E F+ +A+AS+ QV+ ATL+ G V +KV RP +E ++ DL L A
Sbjct: 114 NAPIERYFNDFDDTPLASASISQVHTATLKSNGAAVVLKVLRPDVEKKVHADLLLMSQAA 173
Query: 272 SFLNGISIQKLGCNAEL----IVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPR 327
FL + LG N L +V+++ + EL+ LEA N NF D + IP
Sbjct: 174 DFLERL----LGANNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNALYIPY 229
Query: 328 VYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPH 387
+Y+ L +R++VME IDGI +D A++ G ++ GV Q+ FH D H
Sbjct: 230 MYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFHADMH 289
Query: 388 PGNIFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFL 443
PGN+F R D +D G + L+ ++K+ L + + N DY +A + G++
Sbjct: 290 PGNVFVSREHPNDPFYIGLDCGIMGTLTDEDKRYLAENFLAFFNRDYRRIAQLYIESGWV 349
Query: 444 AKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLL 503
+ TDV A++ + + K L + +F V + + + + + + L+ ++LL
Sbjct: 350 SADTDVGAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLL 409
Query: 504 TQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
EG+ L P + A P++ + + P
Sbjct: 410 YIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 199/389 (51%), Gaps = 4/389 (1%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
+L+ ++ LGP +IK GQ+L+ R D++ +++ EL +LQD VP F + +A +IE EL
Sbjct: 54 GERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIAREMIELEL 113
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 271
G ++ F + +A+AS+ QV+ ATL+ G+ V +KV RP +E + DL L A
Sbjct: 114 GTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDADLHLMSQAA 173
Query: 272 SFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKR 331
+FL + +V+++ + EL+ LEA N NF D ++ IP +Y+
Sbjct: 174 NFLETVLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGSLYIPYMYEE 233
Query: 332 LSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNI 391
L +R++VME I+GI +D A+K G ++ GV Q+ FH D HPGNI
Sbjct: 234 LCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFHADMHPGNI 293
Query: 392 FAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGT 447
F R D +D G + L++++K+ L + + N DY +A + G+++ T
Sbjct: 294 FVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIESGWVSPDT 353
Query: 448 DVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEG 507
D++ A++ + + K L + +F V + + + + + + L+ ++LL EG
Sbjct: 354 DIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLEKTLLYIEG 413
Query: 508 ICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
+ L P + A P++ K + P
Sbjct: 414 LGRQLYPQLDLWQTAKPFLEKWMSEQVGP 442
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 186/382 (48%), Gaps = 7/382 (1%)
Query: 154 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR 213
+LR L +LGP F+K GQVL+ R D++R D EL LQD VP F + VA IIE+ LG
Sbjct: 51 RLRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGA 110
Query: 214 PLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
P++ +F +A+AS+ QV+ ATL+ G+ VA+KV RP + P+I DL L R +
Sbjct: 111 PVDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDI 170
Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
A + + +V EF + L +ELD EA N NF + +P +Y
Sbjct: 171 AVWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYW 230
Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
+ VLVME + G+ + ++ AG+D+ GV Q+ G FH D HPGN
Sbjct: 231 EYCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGN 290
Query: 391 IFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
I D GR +DFG + LS +K L + DY +A G++
Sbjct: 291 IQVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPAT 350
Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
T V + A+ A+ + + L D + V + + + I + L+ +++L E
Sbjct: 351 TRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVE 410
Query: 507 GICFTLKPDFKFLEVAYPYVAK 528
G+ +L P+ + A PY+ +
Sbjct: 411 GLGRSLDPELDLWKTAKPYLER 432
>sp|A9KYL6|UBIB_SHEB9 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS195) GN=ubiB PE=3 SV=1
Length = 549
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 199/398 (50%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|A6WIE7|UBIB_SHEB8 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS185) GN=ubiB PE=3 SV=1
Length = 549
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 118/398 (29%), Positives = 199/398 (50%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNETPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG--RIAYV--DFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF RD Y+ D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 193/382 (50%), Gaps = 5/382 (1%)
Query: 151 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEE 210
RA +LR L +LGP FIK GQ+L+ R D++ ED +EL LQD VP F Q + +IEE+
Sbjct: 56 RAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVALIEEQ 115
Query: 211 LGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTL 270
LG ++ F++ S+ +A+AS+ QV+ A L+ TGE+V +KV RPG++ +I +DL
Sbjct: 116 LGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLAWLYLF 174
Query: 271 ASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYK 330
A S + + +V ++ + + +ELD EA N NF+ P + +P++Y
Sbjct: 175 ARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQIYW 234
Query: 331 RLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGN 390
+VLVME I G+ TD A+ G D+ GV Q+ FH D HPGN
Sbjct: 235 DWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSFFHADMHPGN 294
Query: 391 IFAMR----DGRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKG 446
IF D + +D G V L+ Q++ L ++ DY ++A G++
Sbjct: 295 IFVSTRQPWDPQYIAIDCGIVGSLTPQDQDYLARNLLAFFKRDYRKVAQLHIDSGWVPAD 354
Query: 447 TDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQE 506
T V+ A+ + + K L D +F + + + + + + + L+ ++LL E
Sbjct: 355 TQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTLLNIE 414
Query: 507 GICFTLKPDFKFLEVAYPYVAK 528
G+ L P+ A P++ +
Sbjct: 415 GLGRQLYPELDLWTTAKPFLER 436
>sp|A3D9F4|UBIB_SHEB5 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1
Length = 549
Score = 185 bits (470), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 198/398 (49%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF RD +D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|B8E6B4|UBIB_SHEB2 Probable ubiquinone biosynthesis protein UbiB OS=Shewanella baltica
(strain OS223) GN=ubiB PE=3 SV=1
Length = 549
Score = 185 bits (470), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 198/398 (49%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F +
Sbjct: 45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E++F + +A+AS+ QV+ ATL+ G+DV +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A + + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLQLMSQTAKLIEYLLGEGNRLRPAEVIEDYRVTILGELNLKLEALNAVKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ +P VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYVPYVYEEFCYPRLMVMERIYGISVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF RD +D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMADQVGP 442
>sp|A0L1M6|UBIB_SHESA Probable ubiquinone biosynthesis protein UbiB OS=Shewanella sp.
(strain ANA-3) GN=ubiB PE=3 SV=1
Length = 549
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 117/398 (29%), Positives = 196/398 (49%), Gaps = 4/398 (1%)
Query: 143 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQV 202
R+K +L+ + LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F +
Sbjct: 45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGAL 104
Query: 203 AFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYR 262
A IE EL P+E+ F +A+AS+ QV+ ATL+ G+ V +KV RP +E I
Sbjct: 105 ARQAIEAELKAPIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQA 164
Query: 263 DLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPT 322
DL L A ++ + + +++++ +L EL+ LEA N NF D
Sbjct: 165 DLLLMSQTAKVIDYLLGEGNRLRPSEVIEDYRVTILGELNLKLEALNAIKLRNNFLDSDA 224
Query: 323 VKIPRVYKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLF 382
+ IP VY+ R++VME I GI +D A+K G + GV Q+ F
Sbjct: 225 LYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFF 284
Query: 383 HGDPHPGNIFAMRDG----RIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFT 438
H D HPGNIF R+ +D G + LS+ +K+ L + + N DY +A +
Sbjct: 285 HADMHPGNIFISREHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYI 344
Query: 439 RLGFLAKGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLV 498
G++++ TD+ A++ + + K L + +F V + + ++ I + + L+
Sbjct: 345 ESGWVSEKTDLQAFEQAIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLL 404
Query: 499 IRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNP 536
++LL EG+ L P + A P++ + + P
Sbjct: 405 EKTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGP 442
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 206/438 (47%), Gaps = 23/438 (5%)
Query: 120 RGVEIVWSLGLY-------------WSNLTYDCL-VGRDKEVVPDRARQLRNLLCNLGPS 165
RG+ IVW Y W + + +GR+ + R ++LR L LGP
Sbjct: 6 RGIFIVWVALRYGLDELVLTSFQKPWLRVVARIVSIGRNLDA--PRGQRLREALERLGPI 63
Query: 166 FIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQ 225
F+K GQVL+ R D++ D +EL LQD VP FP+ VA IE RP+ VF +
Sbjct: 64 FVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDET 123
Query: 226 TIAAASLGQVYRATLR-ETGE--DVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKL 282
IA+AS+ QV+ AT+R + GE +VA+KV RP + +I +DL L +A ++ +S
Sbjct: 124 PIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGWVEKLSPDGK 183
Query: 283 GCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRVYKRLSGSRVLVMEW 342
+V EF + L +ELD EA N N V IP ++ V+VME
Sbjct: 184 RLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELVLIPEMFWDFCHPEVIVMER 243
Query: 343 IDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRD----GR 398
++G+ ++ AG+D+ GV+ Q+ G FH D HPGNI GR
Sbjct: 244 MNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFHADMHPGNIQVSLAPETFGR 303
Query: 399 IAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLAKGTDVSPIIPALEA 458
+DFG + L++ +K+ L V DY +A G++ +GT + + A+
Sbjct: 304 YISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLESGWVPEGTRIDELEGAIRT 363
Query: 459 IWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLTQEGICFTLKPDFKF 518
+ + + L + + V + + + + I + L+ ++LL EG+ L P+
Sbjct: 364 VCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLLNIEGLGRQLDPELDL 423
Query: 519 LEVAYPYVAKRLLTDPNP 536
A P++ K ++ P
Sbjct: 424 WHTAKPFLEKWMVDQIGP 441
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 8/389 (2%)
Query: 152 ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEEL 211
A +LR L +LGP F+K GQVL+ R D++ D+ NEL LQD VP F + VA I+E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 212 GRPLEAVFSKISSQTIAAASLGQVYRATLRE---TGEDVAIKVQRPGIEPIIYRDLFLFR 268
G ++ +F + +A+AS+ QV+ A L++ G+ VA+KV RP + P+I DL L R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 269 TLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNMEDFLENFKDDPTVKIPRV 328
+A++ + +V EF + L +ELD EA N NF + +P +
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 329 YKRLSGSRVLVMEWIDGIRCTDPQAIKGAGIDVGGFLTVGVSAALRQLLEFGLFHGDPHP 388
+ S VLVME + G+ + ++ AG+D+ GV Q+ G FH D HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 389 GNIFAMRD----GRIAYVDFGNVAELSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLA 444
GNI D GR +DFG V LS +K L + DY +A G++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 445 KGTDVSPIIPALEAIWQNSSGKGLADFNFRSVTGQFNKLVYNYRIRIPERFSLVIRSLLT 504
T V + A+ A+ + + L D + V + + + I + L+ +++L
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 505 QEGICFTLKPDFKFLEVAYPYVAKRLLTD 533
EG+ +L P+ + A PY+ +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,259,745
Number of Sequences: 539616
Number of extensions: 10157811
Number of successful extensions: 31204
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 30456
Number of HSP's gapped (non-prelim): 303
length of query: 675
length of database: 191,569,459
effective HSP length: 124
effective length of query: 551
effective length of database: 124,657,075
effective search space: 68686048325
effective search space used: 68686048325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)