BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005829
(675 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 144/336 (42%), Gaps = 21/336 (6%)
Query: 324 IQSGILSFLQFGKNVTESNKDPV------KLLRLLEIFAALDKVRVDFNRLFGGEAYGDI 377
IQ + + G+N+ + + + +L + I L + + +F+++ G A
Sbjct: 235 IQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTA-AST 293
Query: 378 QSLIRDLIRRVVNGACEIFLELPLQVK--LQRQVSPPPDGSVPRLVLFVTDYCNQLLGDN 435
++ + LI + + + +K ++ + P DG+V L + QLL
Sbjct: 294 KNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQ 353
Query: 436 YRP---ILTQVLVIHQSWKQAKYEEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFV 492
+ +Q + +++ + LL+ I V+ + LNL S ++D LS +F+
Sbjct: 354 ETAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFL 413
Query: 493 MNNHCHFC-NLKGTKLGDMMGDSWVKAHEQYKNYYAG---LYVRESWGKLFSFLRQDGL- 547
NN+ + +L+ ++L ++ + A Y+ + Y R SW K+ ++ + L
Sbjct: 414 HNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQR-SWLKVTDYIAEKNLP 472
Query: 548 IASPSRKASN--RELVKKKLKDFYQTFDYMVKKHSCWVVTDKNSREKICQLVVQAFLPVY 605
+ P K + R+++K++ K F + + K W + D R+KI Q Y
Sbjct: 473 VFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETY 532
Query: 606 RSYLQNYGVLVEENASGGKYVKYSANDLEKILSSLF 641
++L YG V + KY+KY + ++ LF
Sbjct: 533 GAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLF 567
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 55/299 (18%)
Query: 378 QSLIRDLIRRVVNGACEIFLELPLQVKLQRQVSPPPDGSVPRLVLFVTDYCNQLLG--DN 435
QSL RD I R++ A I + V+ ++ RL F ++Y N LG DN
Sbjct: 282 QSLFRDAIDRIIKKANSIST-----IPSNNGVTEATVDTMSRLRKF-SEYKNGCLGAMDN 335
Query: 436 YRPILTQVLVIHQSWKQAKYEEG----------------LLTRLIYSVIKEIALNLDE-- 477
+ ++W + Y+E LL+ I I +A+NL+
Sbjct: 336 ---------ITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKA 386
Query: 478 ----WSNSHQDIT------------LSYLFVMNNHCHFCNLKGTKLGDMMGDSWVKAHEQ 521
N D+ + + +MN ++ ++L M+ E+
Sbjct: 387 QIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLER 446
Query: 522 YKNYYAGLYVRESWGKLFSFLRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSC 581
K Y Y+ W L + L I S +K+ ++E +K+K + F + F+ +V K
Sbjct: 447 LKKRYIS-YMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQ 505
Query: 582 WVVTDKNSREKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSL 640
+ ++D + + + ++ +P+Y + Y + + K++KY+ ++L +L+ L
Sbjct: 506 YKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFKNPRKHIKYTPDELTTVLNQL 561
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 55/299 (18%)
Query: 378 QSLIRDLIRRVVNGACEIFLELPLQVKLQRQVSPPPDGSVPRLVLFVTDYCNQLLG--DN 435
QSL RD I R++ A I + V+ ++ RL F ++Y N LG DN
Sbjct: 283 QSLFRDAIDRIIKKANSIS-----TIPSNNGVTEATVDTMSRLRKF-SEYKNGCLGAMDN 336
Query: 436 YRPILTQVLVIHQSWKQAKYEEG----------------LLTRLIYSVIKEIALNLDE-- 477
+ ++W + Y+E LL+ I I +A+NL+
Sbjct: 337 ---------ITRENWLPSNYKEKEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKA 387
Query: 478 ----WSNSHQDIT------------LSYLFVMNNHCHFCNLKGTKLGDMMGDSWVKAHEQ 521
N D+ + + +MN ++ ++L M+ E+
Sbjct: 388 QIALMPNQEPDVANPNSSKNKHKQRIGFFILMNLTLVEQIVEKSELNLMLAGEGHSRLER 447
Query: 522 YKNYYAGLYVRESWGKLFSFLRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSC 581
K Y Y+ W L + L I S +K+ ++E +K+K + F + F+ +V K
Sbjct: 448 LKKRYIS-YMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQ 506
Query: 582 WVVTDKNSREKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSL 640
+ ++D + + + ++ +P+Y + Y + + K++KY+ ++L +L+ L
Sbjct: 507 YKLSDPSLKVTLKSEIISLVMPMYERFYSRYK---DSFKNPRKHIKYTPDELTTVLNQL 562
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 530 YVRESWGKLFSFLRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSCWVVTDKNS 589
Y W L + L I S +K+ ++E +K+K + F + F+ +V K + ++D +
Sbjct: 457 YXVSDWRDLTANLXDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSL 516
Query: 590 REKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSL 640
+ + ++ P Y + Y + + K++KY+ ++L +L+ L
Sbjct: 517 KVTLKSEIISLVXPXYERFYSRYK---DSFKNPRKHIKYTPDELTTVLNQL 564
>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|B Chain B, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|C Chain C, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|D Chain D, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|E Chain E, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16.
pdb|2NVV|F Chain F, Crystal Structure Of The Putative Acetyl-Coa
HydrolaseTRANSFERASE Pg1013 From Porphyromonas
Gingivalis, Northeast Structural Genomics Target Pgr16
Length = 506
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 432 LGDN--------YRPILTQVLVIHQSWKQAKYEEGLLTRLIYSVIKEIALNLD------- 476
LGDN Y ++ ++ + K+ G + SVI++I NLD
Sbjct: 270 LGDNPDIPAFNXYTEVIQDAVIALXKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKIL 329
Query: 477 ----EWSNSHQDITLSYLFVMNNHCH---FCNLKGTKLGDMMGDSWVKAHEQYKNYYAGL 529
E+SN+ + + + +N F N+ T + + + +G
Sbjct: 330 LRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRXXNGIGG--------SGD 381
Query: 530 YVRESWGKLFSF--LRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSCWVVTD- 586
+ R S+ +F+ + +DG I+S ++ + + +K S W V D
Sbjct: 382 FTRNSYVSIFTTPSVXKDGKISSFVPXVAHHDHSEHSVKVII----------SEWGVADL 431
Query: 587 --KNSREKICQLVVQAFLPVYRSYLQNY 612
KN RE+ +++ + P YR L+ Y
Sbjct: 432 RGKNPRERAHEIIDKCVHPDYRPLLRQY 459
>pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
Length = 277
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 64 VVRNQIDSAIGPAAAVLKVFDSVQELEKSLISESHSDIFGYLVVLKQLEEAMKFLADNCR 123
+VR + A+G A VL D ++ L+ S +F VVL EEA+ FL DN
Sbjct: 136 IVRTSL--ALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDN-D 192
Query: 124 LAIQWLEGIAEALEGNVAVTD 144
+A+ L+ +G++ V D
Sbjct: 193 IALMVLD-----TDGDLGVKD 208
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 214 SLMPITVIQKLQVII---DRLKANGRLEICISVYAEVRSLNIRKSLQKLDLEYLEKWAKE 270
+L P + Q+ +++I DRLK NG + +++Y SL+ S+ W E
Sbjct: 238 NLYPNDIAQRNEMLIKLGDRLKENGHRQDSLTLYLAAGSLDKVASI----------WLSE 287
Query: 271 FDDVQD 276
F D++D
Sbjct: 288 FPDLED 293
>pdb|3MZL|B Chain B, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|D Chain D, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|F Chain F, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|H Chain H, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 345
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 214 SLMPITVIQKLQVII---DRLKANGRLEICISVYAEVRSLNIRKSLQKLDLEYLEKWAKE 270
+L P + Q+ +++I DRLK NG + +++Y SL+ S+ W E
Sbjct: 201 NLYPNDIAQRNEMLIKLGDRLKENGHRQDSLTLYLAAGSLDKVASI----------WLSE 250
Query: 271 FDDVQD 276
F D++D
Sbjct: 251 FPDLED 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,171,409
Number of Sequences: 62578
Number of extensions: 786013
Number of successful extensions: 2019
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2006
Number of HSP's gapped (non-prelim): 28
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)