Query 005829
Match_columns 675
No_of_seqs 213 out of 514
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 14:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 4E-101 8E-106 868.4 51.1 533 69-645 45-616 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 2.2E-75 4.8E-80 635.9 25.3 353 281-640 1-371 (371)
3 PF06419 COG6: Conserved oligo 99.4 7.8E-09 1.7E-13 119.6 45.4 525 13-637 39-618 (618)
4 PF04129 Vps52: Vps52 / Sac2 f 98.8 2.5E-05 5.5E-10 88.7 38.2 414 9-505 11-485 (508)
5 KOG3758 Uncharacterized conser 98.8 8.1E-05 1.8E-09 82.6 40.0 521 15-637 74-651 (655)
6 KOG1961 Vacuolar sorting prote 98.8 0.00054 1.2E-08 75.8 42.5 400 13-503 76-549 (683)
7 PF09763 Sec3_C: Exocyst compl 98.5 0.0029 6.3E-08 75.1 44.3 544 7-610 25-693 (701)
8 PF04136 Sec34: Sec34-like fam 97.5 0.0024 5.2E-08 61.1 14.0 140 18-193 10-150 (157)
9 KOG2604 Subunit of cis-Golgi t 97.1 0.78 1.7E-05 52.5 32.2 114 36-193 126-241 (733)
10 KOG2148 Exocyst protein Sec3 [ 96.3 2.9 6.3E-05 47.8 36.2 525 20-612 226-838 (867)
11 PF10191 COG7: Golgi complex c 96.2 4.2 9E-05 49.0 36.6 132 221-371 200-335 (766)
12 PF04100 Vps53_N: Vps53-like, 90.3 3 6.5E-05 45.9 12.1 77 36-112 71-147 (383)
13 PF10475 DUF2450: Protein of u 78.0 53 0.0011 34.7 14.2 78 18-95 63-140 (291)
14 PF04124 Dor1: Dor1-like famil 73.8 1.4E+02 0.003 32.3 18.9 53 225-290 177-231 (338)
15 KOG0994 Extracellular matrix g 67.6 1.4E+02 0.003 37.2 15.1 18 176-193 1731-1748(1758)
16 PF07426 Dynactin_p22: Dynacti 58.7 1.5E+02 0.0032 29.0 11.5 21 1-21 1-21 (174)
17 PF07426 Dynactin_p22: Dynacti 58.3 44 0.00095 32.6 7.8 18 37-54 6-23 (174)
18 KOG3821 Heparin sulfate cell s 56.2 16 0.00035 41.3 4.9 73 556-642 95-168 (563)
19 PLN02939 transferase, transfer 50.9 5.5E+02 0.012 31.9 16.8 56 10-65 238-293 (977)
20 PF11887 DUF3407: Protein of u 44.9 1.7E+02 0.0037 30.5 10.2 86 8-93 13-100 (267)
21 PF07393 Sec10: Exocyst comple 44.4 6.3E+02 0.014 30.3 27.2 32 221-252 128-159 (710)
22 PRK10807 paraquat-inducible pr 42.9 97 0.0021 35.9 8.7 25 61-85 470-494 (547)
23 PHA01746 hypothetical protein 38.5 12 0.00025 33.2 0.3 22 605-632 76-97 (131)
24 PF05377 FlaC_arch: Flagella a 35.9 42 0.00091 26.2 2.9 47 38-87 2-48 (55)
25 PF15264 TSSC4: Tumour suppres 35.9 11 0.00025 34.0 -0.2 21 614-634 53-73 (115)
26 PF10805 DUF2730: Protein of u 34.0 1.4E+02 0.0031 26.5 6.5 66 15-80 21-88 (106)
27 PF14932 HAUS-augmin3: HAUS au 31.9 4.1E+02 0.0088 27.5 10.5 112 6-120 69-191 (256)
28 COG2733 Predicted membrane pro 31.2 2.8E+02 0.0061 30.5 9.2 90 527-640 291-384 (415)
29 COG5185 HEC1 Protein involved 27.4 8.1E+02 0.017 27.7 11.9 18 171-188 528-545 (622)
30 PF06825 HSBP1: Heat shock fac 26.5 99 0.0022 24.1 3.6 45 10-57 4-49 (54)
31 KOG2391 Vacuolar sorting prote 26.2 6.9E+02 0.015 27.0 10.8 113 7-119 223-351 (365)
32 PLN03094 Substrate binding sub 25.3 3.4E+02 0.0073 29.9 8.8 8 104-111 355-362 (370)
33 PHA03332 membrane glycoprotein 25.2 5.8E+02 0.013 31.8 11.1 105 15-125 884-992 (1328)
34 TIGR00996 Mtu_fam_mce virulenc 23.9 3.9E+02 0.0086 27.8 9.0 47 36-82 178-224 (291)
35 PF08317 Spc7: Spc7 kinetochor 22.8 7.8E+02 0.017 26.3 11.1 70 6-78 157-227 (325)
36 KOG2307 Low density lipoprotei 22.1 9.8E+02 0.021 27.7 11.6 74 25-98 78-158 (705)
37 KOG1916 Nuclear protein, conta 22.0 5.8E+02 0.013 31.3 10.1 49 558-609 1014-1064(1283)
38 PRK10807 paraquat-inducible pr 21.6 3.9E+02 0.0084 31.0 8.9 8 132-139 519-526 (547)
39 KOG1656 Protein involved in gl 21.1 5.1E+02 0.011 25.9 8.1 78 19-97 65-150 (221)
40 PF01153 Glypican: Glypican; 20.7 80 0.0017 36.7 3.1 72 558-643 89-161 (557)
41 cd07639 BAR_ACAP1 The Bin/Amph 20.7 8.5E+02 0.018 24.3 10.4 30 6-35 3-32 (200)
42 PF12718 Tropomyosin_1: Tropom 20.5 3.1E+02 0.0067 25.7 6.5 14 37-50 81-94 (143)
43 PF04912 Dynamitin: Dynamitin 20.4 6.9E+02 0.015 27.4 10.3 41 6-49 210-259 (388)
44 PF08069 Ribosomal_S13_N: Ribo 20.3 84 0.0018 25.0 2.2 24 618-641 18-41 (60)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-101 Score=868.38 Aligned_cols=533 Identities=30% Similarity=0.500 Sum_probs=471.2
Q ss_pred HHHhhchHHHHHHhhhhhhh---HhHhhh-cccccChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccch
Q 005829 69 IDSAIGPAAAVLKVFDSVQE---LEKSLI-SESHSDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTD 144 (675)
Q Consensus 69 I~~tl~~~~~v~~~~~~~~~---~e~~i~-~gp~~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (675)
++.++..++.+++.|...-. ....+. ..+..++..|++++++|++++.++...++.
T Consensus 45 ~~~~i~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~e~~~~~~~v~~l~~~l~~l~s~~~~-------------------- 104 (623)
T KOG2344|consen 45 KEATIEQAEEIIEKFLTALNLRSSSKIISFLESREEAKNFLSAVNTLQETLQFLVSQNGL-------------------- 104 (623)
T ss_pred HHhhhhhHHHHHHHHhhhcccchhhhhhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCc--------------------
Confidence 56666666666666655542 334443 234578999999999999999999886431
Q ss_pred hhhhhhhhHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCC----------------C---
Q 005829 145 RYNCSVKKSFRILHELLAYEASARLNGGLLFEALNYLESEFNRLVTENTIPFALVASSSS----------------P--- 205 (675)
Q Consensus 145 ~~~~~v~~~~~~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~----------------~--- 205 (675)
+..+.++. + ...+++.||.+||+||++||..++.+++|..+... .
T Consensus 105 -------~~~~~~~~------~---~d~l~~~am~~le~EF~~il~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (623)
T KOG2344|consen 105 -------QSSKLLKA------Q---ADSLLQIAMSRLEKEFRQILENNREELDPERLSVRLRSSLNSKDEEASLNSDSKY 168 (623)
T ss_pred -------chhhhHHH------h---HHHHHHHHHHHHHHHHHHHHHhcccccchHhhhhcccccccccccccccccCccc
Confidence 01122221 1 12599999999999999999999999998653210 0
Q ss_pred --------CCccccCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhhHHHHHHHHhcchhhhhhhhcccccHHhh
Q 005829 206 --------GKQAYIGSSLMPITVIQKLQVIIDRLKANGRLEICISVYAEVRSLNIRKSLQKLDLEYLEKWAKEFDDVQDI 277 (675)
Q Consensus 206 --------~~~~~~~~~~l~~~~i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~l 277 (675)
.......++.+|++++.+|+.||++|+++||.++|+++|..+|+.+++++|..||+++++....++++|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~l 248 (623)
T KOG2344|consen 169 SALSDEESFGDDEIEPDLFPPDVMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVL 248 (623)
T ss_pred ccccccccccCceeeccCCCchhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHH
Confidence 001123467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCCcchhhhHHHHHhhHHhHHHHHHhhHHHhhcCCChHHHHHHHHHHHH
Q 005829 278 EGLIGNWCKHLELVVKHVFEPECKLCSDVFNKIGLDICNCCFAKIAIQSGILSFLQFGKNVTESNKDPVKLLRLLEIFAA 357 (675)
Q Consensus 278 e~~I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll~f~~~va~~~r~~~klf~lLdm~e~ 357 (675)
+.+|++|+++++++++.||++|+.||++||++.....+ .||.+|+. +++++|++|+++|+.++|+|+|+|++||||++
T Consensus 249 e~~I~~Wi~~~kv~v~~lf~~E~~Lcd~If~~~~~~~~-~cF~eI~~-~~~~~ll~F~eava~~kr~pEklf~iLd~y~~ 326 (623)
T KOG2344|consen 249 EGKIKKWIKAVKVAVSVLFEGEKKLCDQIFSDLESIVE-SCFPEIVK-EAALQLLSFPEAVAISKRSPEKLFKLLDLYET 326 (623)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCccchHHH-HHHHHHHH-HHHHHhhccchheeeccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998655455 89999995 46889999999999999999999999999999
Q ss_pred HHhhhHHHHhhhCCCChhHHHHHHHHHHHHHHHhHHHHHHhhHHHhhcccCCCCCCCCccchhhHHHHHHHHHhhcCCcH
Q 005829 358 LDKVRVDFNRLFGGEAYGDIQSLIRDLIRRVVNGACEIFLELPLQVKLQRQVSPPPDGSVPRLVLFVTDYCNQLLGDNYR 437 (675)
Q Consensus 358 L~~l~p~~~~lf~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~~~~i~~~~~~~~p~dG~Vh~lT~~vmnyl~~L~~~~y~ 437 (675)
+.+++|+++++|++.+|.+++.++..++++|+++++++|.||+..|+.+++++|++||||||||+||||||+.|+ +|+
T Consensus 327 i~~l~p~ie~lF~~~~~s~vr~~~~~~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~--dy~ 404 (623)
T KOG2344|consen 327 IVELRPDIERLFSDASCSEVRSQALSLLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLA--DYK 404 (623)
T ss_pred HHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhHhh----cccc---cchhcchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-eccCCCccc
Q 005829 438 PILTQVLVIHQ----SWKQ---AKYEEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NLKGTKLGD 509 (675)
Q Consensus 438 ~~L~~il~~~~----~w~~---~~~~~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v~~S~L~~ 509 (675)
++|.++|..+. .|.+ .....++++.++.|||.+|++||++||+.|+|++|+|||||||++||+ ++++++|+.
T Consensus 405 ~tL~~il~~~~~~~~~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvkss~L~~ 484 (623)
T KOG2344|consen 405 DTLEQLLMEDPVDTSLPKSESEDESSNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVKSSELRL 484 (623)
T ss_pred HHHHHHHhccccccccCcccccccccccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHhcchHHH
Confidence 99999998743 2222 123447899999999999999999999999999999999999999999 999999999
Q ss_pred cccchHHHHHHHHHHHHHHhHHHhhHHHHHhhhhccCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccceecChHH
Q 005829 510 MMGDSWVKAHEQYKNYYAGLYVRESWGKLFSFLRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSCWVVTDKNS 589 (675)
Q Consensus 510 lLg~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~q~~w~VpD~~L 589 (675)
+||++|+++|..++++|++.|+|++|++|+++|.+++.+ +++ .++|+.+||||++||++|||+|++|++|+||||+|
T Consensus 485 llGd~wl~kh~~~~~qy~~~Y~r~sW~~vl~~L~~~~s~--~~~-~~~~~~~Kerfk~FN~~FeEv~k~Qs~wvV~D~~L 561 (623)
T KOG2344|consen 485 LLGDDWLRKHEEKLRQYATSYERESWGKVLSLLTDEGSS--SGG-KKSKEVLKERFKLFNEQFEEVYKKQSQWVVPDPKL 561 (623)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccc-ccCHHHHHHHHHHHHHHHHHHHHhhCceecccHHH
Confidence 999999999999999999999999999999999998722 222 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCCCCcccccCHHHHHHHHHhhcCCCC
Q 005829 590 REKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSLFQPNL 645 (675)
Q Consensus 590 R~~Lr~~i~~~v~P~Y~~F~~ry~~~~~~~k~~~KyiKytpe~le~~L~~LF~g~~ 645 (675)
|++||.+|+++|+|+|++||+||++.+ .+|||+|||||||+|||++|++||+|++
T Consensus 562 r~eLk~si~~~v~P~Yr~F~~r~~~~~-~~k~~~kyikYtpedlE~~L~dLF~g~~ 616 (623)
T KOG2344|consen 562 REELKISISEKVVPAYRSFYGRYRNSV-SGKNPEKYIKYTPEDLENYLSDLFEGSP 616 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCCcccccCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999766 5999999999999999999999999997
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=2.2e-75 Score=635.94 Aligned_cols=353 Identities=30% Similarity=0.575 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhccCCcchhhhHHHHHhhHHhHHHHHHhhHHHh---hcCCChHHHHHHHHHHHH
Q 005829 281 IGNWCKHLELVVKHVFEPECKLCSDVFNKIGLDICNCCFAKIAIQSGILSFLQFGKNVT---ESNKDPVKLLRLLEIFAA 357 (675)
Q Consensus 281 I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll~f~~~va---~~~r~~~klf~lLdm~e~ 357 (675)
|++|++++.+++.+|+++|++||++||+.. ++.+..||.+++ ++++..|++||++|+ ...++|+++|.+||||++
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~~-~~~~~~~f~~i~-~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~ 78 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPES-SSIADECFAEIA-KPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEA 78 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSCC-CTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCC-cccHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999984 446889999999 578999999999999 788999999999999999
Q ss_pred HHhhhHHHHhhhCCCChhHHHHHHHHHHHHHHHhHHHHHHhhHHHhhc--ccCCCCCCCCccchhhHHHHHHHHHhhcCC
Q 005829 358 LDKVRVDFNRLFGGEAYGDIQSLIRDLIRRVVNGACEIFLELPLQVKL--QRQVSPPPDGSVPRLVLFVTDYCNQLLGDN 435 (675)
Q Consensus 358 L~~l~p~~~~lf~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~~~~i~~--~~~~~~p~dG~Vh~lT~~vmnyl~~L~~~~ 435 (675)
|.++.|+++.+|.|.++..++.++.+++++|+++++++|.+|...|+. +....+|+||||||+|++|||||+.|+ +
T Consensus 79 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~--~ 156 (371)
T PF03081_consen 79 LSELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLA--E 156 (371)
T ss_dssp HHHHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHH--C
T ss_pred HHHHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHH--H
Confidence 999999999999999998999999999999999999999999999999 777789999999999999999999999 9
Q ss_pred cHHHHHHHHhHhh--cccccch----------hcchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-ec
Q 005829 436 YRPILTQVLVIHQ--SWKQAKY----------EEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NL 502 (675)
Q Consensus 436 y~~~L~~il~~~~--~w~~~~~----------~~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v 502 (675)
|+++|+.+|...+ +|.++.. +.++++.||.++|++|+.|||+||+.|+|++|++||||||+|||. ++
T Consensus 157 y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~ 236 (371)
T PF03081_consen 157 YRDTLESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKL 236 (371)
T ss_dssp THHHHHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHh
Confidence 9999999998854 4544321 557899999999999999999999999999999999999999999 99
Q ss_pred cCCCccccccchHHHHHHHHHHHHHHhHHHhhHHHHHhhhhccCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc
Q 005829 503 KGTKLGDMMGDSWVKAHEQYKNYYAGLYVRESWGKLFSFLRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSCW 582 (675)
Q Consensus 503 ~~S~L~~lLg~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~q~~w 582 (675)
++|+|..++|++|.+++..++++|++.|++.+|+||+++|.+++....++++.++|+.+|+||++||++|||+|+.|+.|
T Consensus 237 ~~s~l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~~ 316 (371)
T PF03081_consen 237 KRSELKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSSGGKLSSKERELLKEKFKKFNSAFEEIYKAQKTW 316 (371)
T ss_dssp CTSHHHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhcchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHcCcce
Confidence 99999999999999999999999999999888999999999864434455678999999999999999999999999999
Q ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCcccccCHHHHHHHHHhh
Q 005829 583 VVTDKNSREKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSL 640 (675)
Q Consensus 583 ~VpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~~~~k~~~KyiKytpe~le~~L~~L 640 (675)
+||||+||++||++|+++|+|+|++||+||+. ..| ||+|||||||++||++|++|
T Consensus 317 ~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~-~~~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 317 KVPDPELREELRREIKEKVVPAYRRFYERYRN-SQF--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp --S-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CSS--SHCCC-SS-HHHHHHHHHTC
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc--CCCCCCccCHHHHHHHHHcC
Confidence 99999999999999999999999999999987 445 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=99.42 E-value=7.8e-09 Score=119.57 Aligned_cols=525 Identities=14% Similarity=0.180 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHh
Q 005829 13 ARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKS 92 (675)
Q Consensus 13 ~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~ 92 (675)
+-.-+.+.|.+-...-+.|+ ...+.+.+++........++..++..|+.-.+.|+.=-..+...++.|......+.+
T Consensus 39 ~f~~v~~~l~~~~~~v~~l~---~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~ 115 (618)
T PF06419_consen 39 EFSPVNRQLKRLQSDVDKLN---SSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDA 115 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 33444555555555555566 888888999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHHhhhh
Q 005829 93 LISESHSDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASARLNGG 172 (675)
Q Consensus 93 i~~gp~~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 172 (675)
|..|...==+.|.++|+|.++- .++|. +|-.. ..+.+ ...++ .....
T Consensus 116 L~~~~~~v~~~FF~~L~r~~~I----~~~c~-----------~LL~~-~~~~a-------g~~iM----------~~~~~ 162 (618)
T PF06419_consen 116 LTSGEEPVDDEFFDALDRVQKI----HEDCK-----------ILLST-ENQRA-------GLEIM----------EQMSK 162 (618)
T ss_pred HhCCCCCCCHHHHHHHHHHHHH----HHHHH-----------HHhCC-CCchH-------HHHHH----------HHHHH
Confidence 9888322235788888886643 33432 11111 11111 11222 22456
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhhHHH
Q 005829 173 LLFEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSSLMPITVIQKLQVIIDRLKANGRLEICISVYAEVRSLNI 252 (675)
Q Consensus 173 Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~l~~~~i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l 252 (675)
.++.|..+|-.....-...... + .+..++..-..|+.+.++. .+.+.|++.|+..|+..+
T Consensus 163 ~~e~a~erl~~w~q~e~~~l~~----~-------------~~~~~~~l~~al~~L~~rp---~lf~~~l~~~~~~R~~~l 222 (618)
T PF06419_consen 163 YLERAYERLYRWVQRECRSLNL----D-------------NPEVSPLLRRALRYLRERP---VLFNYCLDEFAEARSKAL 222 (618)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh----c-------------CcccchHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHH
Confidence 6777777764444322222100 0 0112233334444444432 345689999999999986
Q ss_pred HHH-HHhcchhhhh------hhhcccccHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCCcc------------
Q 005829 253 RKS-LQKLDLEYLE------KWAKEFDDVQDIEGLIGNWCKHLELVVKHVFEPECKLCSDVFNKIGLD------------ 313 (675)
Q Consensus 253 ~~s-L~~L~~~~~~------~~~~~~~~~~~le~~I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~~~~~------------ 313 (675)
.+. +..|....-+ .....-+|..-+. -|--|++. .+++|+.++..+|..-...
T Consensus 223 ~~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvG-DmLAwvHq-------~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~ 294 (618)
T PF06419_consen 223 LRRFLDALTRGGPGGSPSRPIELHAHDPLRYVG-DMLAWVHQ-------AIASEREFLESLFKFDEDEIAEGSSSGFDSN 294 (618)
T ss_pred HHHHHHHHcCCCCCCCCCCchhhhccChHHHHH-HHHHHHHH-------HhhhHHHHHHHHhcccccccccccccccccc
Confidence 644 4555422211 1011112333222 22346554 5789999999999742111
Q ss_pred -----h----hhhHHHHHhhHHhHHHHHHhhHHHhhcCCChH---HHHHHHHHHHHHHhhhHHHHhhhCCCChhHHHHHH
Q 005829 314 -----I----CNCCFAKIAIQSGILSFLQFGKNVTESNKDPV---KLLRLLEIFAALDKVRVDFNRLFGGEAYGDIQSLI 381 (675)
Q Consensus 314 -----~----~~~~F~~i~~~~~i~~ll~f~~~va~~~r~~~---klf~lLdm~e~L~~l~p~~~~lf~~~~~~~i~~~~ 381 (675)
. -+.+|..+| + |+- .-.+.|..+..+|. +++.+|..|..+ |..+.+..+ .+
T Consensus 295 ~~~~~~~~~lld~i~~~l~-r-plk---~RvEQvi~se~~~i~~yki~~LL~fY~~~------~~k~i~~~s------~L 357 (618)
T PF06419_consen 295 PWSEELINELLDRILEGLC-R-PLK---IRVEQVISSEEDPITLYKIANLLSFYQMT------FSKLIGEDS------SL 357 (618)
T ss_pred cchHHHHHHHHHHHHHHHh-H-HHH---HHHHHHHHcCCCccHHHHHHHHHHHHHHH------HHHHcCCCc------hH
Confidence 1 112333333 1 111 12333333334444 566677776554 223332222 24
Q ss_pred HHHHHHHHHhHHHHHHhhH----HHhhcccCCCCCCCCccchhhHHHHHHHHHhhcCCcHHHHHHHHhHhhcccccchhc
Q 005829 382 RDLIRRVVNGACEIFLELP----LQVKLQRQVSPPPDGSVPRLVLFVTDYCNQLLGDNYRPILTQVLVIHQSWKQAKYEE 457 (675)
Q Consensus 382 ~~~l~~L~~~~~~~f~e~~----~~i~~~~~~~~p~dG~Vh~lT~~vmnyl~~L~~~~y~~~L~~il~~~~~w~~~~~~~ 457 (675)
...+..|.+.|.+.|.... ..+.......||.|=..++.....++-|+-++. .|..++ .+.+..+
T Consensus 358 ~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~~il~-~~~~s~----------~~~~~~~ 426 (618)
T PF06419_consen 358 IETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLREILD-VYDSSL----------SPDDDRE 426 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHH-Hhhccc----------CCccchh
Confidence 5666777777777666543 333333234567787777766666666555542 222211 1122222
Q ss_pred --chHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-eccCCCccccccchHHHHHHHHHHH--------H
Q 005829 458 --GLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NLKGTKLGDMMGDSWVKAHEQYKNY--------Y 526 (675)
Q Consensus 458 --~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v~~S~L~~lLg~~~~~~~~~~~~~--------~ 526 (675)
.-+...+..+|+-+....+.-|....++.-..||++|...+|. .+..-+.. ..+...++..++. .
T Consensus 427 ~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~~----~~~~e~L~~~id~~~~~Lv~~Q 502 (618)
T PF06419_consen 427 NDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEFT----SERVEELQDQIDAHVDTLVEEQ 502 (618)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777776667999999999988 76653221 2344444333333 2
Q ss_pred HHhHHHh-hHHHHHhhhh----ccCc--cCCCCCCcccHHHHHHHHHHHHHHHHHH-HHhccc-ceecChHHHHHHHHHH
Q 005829 527 AGLYVRE-SWGKLFSFLR----QDGL--IASPSRKASNRELVKKKLKDFYQTFDYM-VKKHSC-WVVTDKNSREKICQLV 597 (675)
Q Consensus 527 ~~~Y~~~-sW~~vl~~L~----~~~~--~~~~~~~~~~r~~iKekfk~FN~~Fee~-~~~q~~-w~VpD~~LR~~Lr~~i 597 (675)
....+.. .=+++...+. +.+. +.+ .....+.+.++.-..+|++-+--. .-.+.. -.+.+|.+|+.++...
T Consensus 503 ~~~lL~~sGL~~~~~~l~~i~~~~~~~~pls-~~p~~~~~~l~~a~~kld~fL~sa~~d~~~~L~~L~Sp~l~~~I~~~a 581 (618)
T PF06419_consen 503 ASFLLERSGLGDLYNALNMIFFDYDMYGPLS-ENPGMDPDSLSNALQKLDDFLPSALTDAQPNLFKLQSPKLRDDIRERA 581 (618)
T ss_pred HHHHHHHCCcHHHHHHHHhhccCCcccCCcc-cCccCCHHHHHHHHHHHHHHHcccchhhhHHHHHhcCHHHHHHHHHHH
Confidence 3233322 2345555554 2111 111 112345555655555555443222 122233 4478999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccCCCCcccccCHHHHHHHH
Q 005829 598 VQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKIL 637 (675)
Q Consensus 598 ~~~v~P~Y~~F~~ry~~~~~~~k~~~KyiKytpe~le~~L 637 (675)
...++-+|..||+...+. ...-+.-...||++|..+|
T Consensus 582 ~~~f~~~Y~~v~~~v~d~---~n~y~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 582 FERFCKAYEKVYEAVMDP---DNGYESLFPRTPEEIRTLL 618 (618)
T ss_pred HHHHHHHHHHHHHHHhCh---hcccccccCCCHHHHhhcC
Confidence 999999999999998642 2221145688999998764
No 4
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.85 E-value=2.5e-05 Score=88.69 Aligned_cols=414 Identities=15% Similarity=0.135 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhh
Q 005829 9 SLLAARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQE 88 (675)
Q Consensus 9 ~~~a~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~ 88 (675)
+...++..|...+.....+-..|. ..|..|...|+.+...|.-++.+...++..=+|-..+...+..+++..-...+
T Consensus 11 ~e~~~~~~Lh~~i~~cd~~L~~le---~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~ 87 (508)
T PF04129_consen 11 KESENFADLHNQIQECDSILESLE---EMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPD 87 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHH
Confidence 345678888899999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhcccccChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHH
Q 005829 89 LEKSLISESHSDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASAR 168 (675)
Q Consensus 89 ~e~~i~~gp~~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~ 168 (675)
+-..|..||.++ .|+..+.++.+-..++.++.. ..+.. .++... .
T Consensus 88 lI~~I~~~~v~e--~~~~~~~~~~~k~~~~~~~~~-----------------~~~~~---a~~d~~-------------~ 132 (508)
T PF04129_consen 88 LIRSICEGPVNE--QYIEELLELLKKKIFFSKDQS-----------------FKDSK---AIKDVK-------------P 132 (508)
T ss_pred HHHhHhcCCCCH--HHHHHHHHHHHHHHHHHhhcc-----------------ccccc---chHHHH-------------H
Confidence 999998988655 777776555554444433211 00100 011111 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCC--chHHHHHHHH
Q 005829 169 LNGGLLFEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSSLMPITVIQKLQVIIDRLKANGR--LEICISVYAE 246 (675)
Q Consensus 169 ~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~l~~~~i~~L~~Ia~~m~~~g~--~~e~~~~Y~~ 246 (675)
..+.|-.+|+.++-+.|-.-+..-+.|..+. .+....+-..+.+..+|..++. ..|+.++|+.
T Consensus 133 ~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~---------------q~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~ 197 (508)
T PF04129_consen 133 ELEKLKNKAVERIRDFLLKKIKSLRKPKTNS---------------QIIQQVLLKYKELFQFLKKHSPELAKELRQAYVE 197 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCch---------------HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2467888999999999999999887664211 1222345556677777776543 2466667766
Q ss_pred HhhHHHH-------HHHHhcchhhhhhh----------------h-c---cc---------ccHH---------------
Q 005829 247 VRSLNIR-------KSLQKLDLEYLEKW----------------A-K---EF---------DDVQ--------------- 275 (675)
Q Consensus 247 ~R~~~l~-------~sL~~L~~~~~~~~----------------~-~---~~---------~~~~--------------- 275 (675)
.=+.+.. .+|..|..+..... . . .. .++-
T Consensus 198 tM~~~Y~~~F~~Y~~~L~kl~~~~~~~~~dL~g~~~~~~~~~~s~~~~~~~~~~~Fslg~R~~iL~~~~~~p~i~~~~a~ 277 (508)
T PF04129_consen 198 TMSWYYSSYFKRYIRSLEKLQLRIIDSKDDLIGVEDSSKGGFFSSKSSLKNRSSVFSLGRRIDILNSELDAPIIVPQIAE 277 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCccccccccCCCcccccchhhhhhhHHHHHHhhcccCCccccchhh
Confidence 5443322 23333322111111 0 0 00 0000
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCCcchhhhHHHHHhhHHhHHHHHHhhHHHhhcCCChHHHH
Q 005829 276 ------DIEGLIGNWCKHLELVVKHVFEPECKLCSDVFNKIGLDICNCCFAKIAIQSGILSFLQFGKNVTESNKDPVKLL 349 (675)
Q Consensus 276 ------~le~~I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll~f~~~va~~~r~~~klf 349 (675)
..|..+++|..++. --..+|+..|.+-|.. ..+....+|.+|- .+++..+..|-+.......++..++
T Consensus 278 ~~~~k~~~E~iFRS~~~~L~----Dn~t~Ey~F~~~FF~~-~~~~~~~if~~If-~~t~~~~~~~~~~~l~~~~D~igll 351 (508)
T PF04129_consen 278 DNSQKYPIEEIFRSLNKALI----DNATSEYLFISEFFSG-SGDAAEDIFNQIF-EPTFSLLQEFTEQLLSNSYDAIGLL 351 (508)
T ss_pred cccccCCHHHHHHHHHHHHH----HhhhHHHHHHHHHHcc-cccchHHHHHHHH-HHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 02233444444432 2356899999999976 2344566788877 4455555567766544333433444
Q ss_pred HHHHHHHHHHhhhHHHHhhhCCCChhHHHHHHHHHHHHHHHhHHHHHHhhHHHhhcccC-CCCCCCCccchhhHHHHHHH
Q 005829 350 RLLEIFAALDKVRVDFNRLFGGEAYGDIQSLIRDLIRRVVNGACEIFLELPLQVKLQRQ-VSPPPDGSVPRLVLFVTDYC 428 (675)
Q Consensus 350 ~lLdm~e~L~~l~p~~~~lf~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~~~~i~~~~~-~~~p~dG~Vh~lT~~vmnyl 428 (675)
. |.-......-.+.+ .+.++ +..-+..+...|-..-..++..=.++++.-.. ...+.+.+.|++|+--..|+
T Consensus 352 l---~Irl~~~~~~~~~~--R~ip~--ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~ 424 (508)
T PF04129_consen 352 L---CIRLNQRYQFEMQR--RRIPV--LDSYLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFL 424 (508)
T ss_pred H---HHHHHHHHHHHHHh--CCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHH
Confidence 4 44444443333322 12221 22233333333333444444444455554332 23447888899988765555
Q ss_pred HHhhcCCcHHHHHHHHhHhhcccccchhcchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-eccCC
Q 005829 429 NQLLGDNYRPILTQVLVIHQSWKQAKYEEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NLKGT 505 (675)
Q Consensus 429 ~~L~~~~y~~~L~~il~~~~~w~~~~~~~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v~~S 505 (675)
..|. .+-... ++..+...+..+-..++.-|..-|+..+++..+.+||.||+.+|+ .+...
T Consensus 425 ~sll---------~L~~~~--------~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~ 485 (508)
T PF04129_consen 425 SSLL---------KLSSEH--------PDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSER 485 (508)
T ss_pred HHHH---------HHhccC--------chhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhc
Confidence 5443 221111 112245555566666666666667888899889999999999999 66543
No 5
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=8.1e-05 Score=82.61 Aligned_cols=521 Identities=14% Similarity=0.147 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHhhh
Q 005829 15 KLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKSLI 94 (675)
Q Consensus 15 ~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~ 94 (675)
.-++..+.+-++.-..|. +..+++..++++.-..---+...|.+++.-...|+.-..-+...++.|...++.-..|.
T Consensus 74 ~~i~~~l~~v~e~v~km~---~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~ 150 (655)
T KOG3758|consen 74 KEIKRRLDRVSEDVEKMA---NTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLT 150 (655)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHh
Confidence 334445555555555555 77777777777766666667788999999999999999999999999999888777776
Q ss_pred c-ccccChHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHHhh
Q 005829 95 S-ESHSDIFGYLVVLKQLEE---AMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASARLN 170 (675)
Q Consensus 95 ~-gp~~~l~~Yl~al~~L~~---a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 170 (675)
. ||.. +.|-.+++|.++ .-.+|-... ...+.+ .++. .+
T Consensus 151 ~~g~i~--e~FF~vL~rvqeIh~~~~~Ll~~~-------------------~~~Ag~-------eime----------~M 192 (655)
T KOG3758|consen 151 ESGPID--EDFFKVLDRVQEIHDNCRLLLQTP-------------------NQTAGL-------EIME----------KM 192 (655)
T ss_pred cCCcch--HHHHHHHHHHHHHHHHHHHHHhcc-------------------chhhHH-------HHHH----------HH
Confidence 6 5632 345555555443 222222210 011111 1111 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHhh
Q 005829 171 GGLLFEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSSLMPITVIQKLQVIIDRLKANG-RLEICISVYAEVRS 249 (675)
Q Consensus 171 ~~Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~l~~~~i~~L~~Ia~~m~~~g-~~~e~~~~Y~~~R~ 249 (675)
....+.|..+| |+-..+++.. ++.. .=..++-+-|+.-..++...- --+.|++-|+..|+
T Consensus 193 ~~~~E~a~erl---~r~~qs~e~~--~l~~--------------t~~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~ 253 (655)
T KOG3758|consen 193 ALIQEGAYERL---FRWSQSSECR--NLTG--------------TDSQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARS 253 (655)
T ss_pred HHHHHHHHHHH---HHHhhhHhhc--CCcc--------------ccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 33344444443 3322221111 0000 012355666666666665432 23679999999999
Q ss_pred HHH-HHHHHhcch-hhhhhh----hcccccHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcc----C---------
Q 005829 250 LNI-RKSLQKLDL-EYLEKW----AKEFDDVQDIEGLIGNWCKHLELVVKHVFEPECKLCSDVFNK----I--------- 310 (675)
Q Consensus 250 ~~l-~~sL~~L~~-~~~~~~----~~~~~~~~~le~~I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~----~--------- 310 (675)
..+ .+.+..|-. ...+.. ....++...+. .+-.|++. ..++|+++...+|.- .
T Consensus 254 ~~L~~~Fisaltrg~~~~~PrpIel~ahDPlRyIG-DmLawlHq-------~ia~Ekelv~aLfd~~~~d~q~n~~~~en 325 (655)
T KOG3758|consen 254 QSLLRQFISALTRGGPGGMPRPIELHAHDPLRYIG-DMLAWLHQ-------AIANEKELVEALFDFKKEDLQDNISISEN 325 (655)
T ss_pred HHHHHHHHHHHccCCCCCCCCCccccCCChHHHHH-HHHHHHHH-------HhhhHHHHHHHHhcchhhhhccCCCchhH
Confidence 864 566666621 111111 11112333222 22346554 578999999999821 0
Q ss_pred --------CcchhhhHHHHHhhHHhHHHHHHhhHHHhhcCCChHHHH---HHHHHHHHHHhhhHHHHhhhCCCChhHHHH
Q 005829 311 --------GLDICNCCFAKIAIQSGILSFLQFGKNVTESNKDPVKLL---RLLEIFAALDKVRVDFNRLFGGEAYGDIQS 379 (675)
Q Consensus 311 --------~~~~~~~~F~~i~~~~~i~~ll~f~~~va~~~r~~~klf---~lLdm~e~L~~l~p~~~~lf~~~~~~~i~~ 379 (675)
....-+.|+..+| + |.. --.+.|...-+++.-+| .+|..|.. -|..+..+++
T Consensus 326 ~~~vl~~~dn~lld~i~~gvc-r-Plk---vRvEqil~~e~~~Iilfki~nlL~FY~~------~fs~~v~~ds------ 388 (655)
T KOG3758|consen 326 LPNVLGGIDNKLLDDILEGVC-R-PLK---VRVEQILQAEKNAIILFKISNLLKFYRV------TFSKLVQDDS------ 388 (655)
T ss_pred hHHHHhchhhhHHHHHHHHhc-c-hhH---HHHHHHHHcCcCceeehhHHHHHHHHHH------HHHHHhcccH------
Confidence 0011224555555 2 211 12344433444555333 34444422 2223333332
Q ss_pred HHHHHHHHHHHhHHHHHHhhHH-Hhhc--ccCCCCCCCCccchhhHHHHHHHHHhhcCCcHHHHHHHHhHhhcccccchh
Q 005829 380 LIRDLIRRVVNGACEIFLELPL-QVKL--QRQVSPPPDGSVPRLVLFVTDYCNQLLGDNYRPILTQVLVIHQSWKQAKYE 456 (675)
Q Consensus 380 ~~~~~l~~L~~~~~~~f~e~~~-~i~~--~~~~~~p~dG~Vh~lT~~vmnyl~~L~~~~y~~~L~~il~~~~~w~~~~~~ 456 (675)
.+...++.|.+.++.+|-.... +++. ++...||.|=.-+|-++..|+-+.-++. -|..++...... ..+.
T Consensus 389 ~l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ll~ei~~-~~~a~~~~~d~~------~~df 461 (655)
T KOG3758|consen 389 ALLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREYLNLLVEIFE-IYEASHTAEDGE------QLDF 461 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHHHHHHH-Hhhhhhcccccc------ccch
Confidence 2456677777777777765542 2322 2223455576666666555554444441 344333221100 1112
Q ss_pred cchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-eccCCCccccccchHHHHHHHHHHHHH--------
Q 005829 457 EGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NLKGTKLGDMMGDSWVKAHEQYKNYYA-------- 527 (675)
Q Consensus 457 ~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v~~S~L~~lLg~~~~~~~~~~~~~~~-------- 527 (675)
+..+++.+.-++..-...-|.+-. -+|.+. -+||+|-.+.|. .+..-+.. +...+..+.+.+.|.
T Consensus 462 ~~l~s~vldpilq~c~~sae~~lp-~~d~~~-~if~iNcL~~iks~l~~~e~~----~~~~e~lq~~ie~~~d~L~t~q~ 535 (655)
T KOG3758|consen 462 KLLLSCVLDPILQMCQKSAEAHLP-TSDKGS-LIFMINCLDLIKSRLARYEFL----DERVEMLQAKIEAYLDTLVTLQV 535 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-Cccccc-ceehhhhHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444422 123322 599999988887 55432111 111222222222222
Q ss_pred HhHH-HhhHHHHHhhhhccCccCC--CCCCcccHHHHHHHHHHHHHHHHHHHHhcccce------ecChHHHHHHHHHHH
Q 005829 528 GLYV-RESWGKLFSFLRQDGLIAS--PSRKASNRELVKKKLKDFYQTFDYMVKKHSCWV------VTDKNSREKICQLVV 598 (675)
Q Consensus 528 ~~Y~-~~sW~~vl~~L~~~~~~~~--~~~~~~~r~~iKekfk~FN~~Fee~~~~q~~w~------VpD~~LR~~Lr~~i~ 598 (675)
+-|+ +..-+++.+.+.+...... +...+-+-..+++-...|-. ....-..+. +.-|.+|++++....
T Consensus 536 s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~~~~~~i~~fd~----~l~~~~~~~lpq~q~l~sp~~r~~i~kr~~ 611 (655)
T KOG3758|consen 536 SFLLENTGLSDLYQKFNMITPEDSVLSLDPDLESALLDEAIVKFDM----FLHAPLNLTLPQLQQLTSPMVRDEICKRSA 611 (655)
T ss_pred HHHHHHcChHHHHHHHHhcCcchhhhhccccccHHHHHHHHHHHHH----HhcccccccchHHHHHcCHHHHHHHHHHHH
Confidence 1222 1223333333332211111 11112233344443333322 122222333 457899999999999
Q ss_pred HHHHHHHHHHHHhccccccccCCC-CcccccCHHHHHHHH
Q 005829 599 QAFLPVYRSYLQNYGVLVEENASG-GKYVKYSANDLEKIL 637 (675)
Q Consensus 599 ~~v~P~Y~~F~~ry~~~~~~~k~~-~KyiKytpe~le~~L 637 (675)
..++-+|..+|++-.+....-+-| +--++++|+++...+
T Consensus 612 ~~~~~aY~~i~~al~~~~ngy~dPve~ll~~~~dq~~tll 651 (655)
T KOG3758|consen 612 KKFVLAYEIIYKALINPYNGYKDPVESLLHFSPDQVDTLL 651 (655)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCChHHHHhcCCHHHhcccc
Confidence 999999999999988543334556 667788888877655
No 6
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.75 E-value=0.00054 Score=75.82 Aligned_cols=400 Identities=13% Similarity=0.106 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHh
Q 005829 13 ARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKS 92 (675)
Q Consensus 13 ~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~ 92 (675)
....|...+.--+.+-.+|. ..|.+|..+|+....-|.-++.+.+..+..=+|-..+...+....+-.-+..++-..
T Consensus 76 ~~~~lhNqi~~cd~Vl~rme---~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~ 152 (683)
T KOG1961|consen 76 NLASLHNQIRACDSVLERME---TMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKT 152 (683)
T ss_pred hhhhHhhhHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHH
Confidence 34445555566666677777 889999999999999999999888888888888888888888888888888999999
Q ss_pred hhcccccChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHHhhhh
Q 005829 93 LISESHSDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASARLNGG 172 (675)
Q Consensus 93 i~~gp~~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 172 (675)
|..||-.+ +.|+++++.|..=+.+..... ++.|..-+ +..... .+.
T Consensus 153 I~~g~vne-~~f~~~LeeL~~Kl~~v~~dq-----------------~~k~a~a~---~Dv~~l-------------Ldk 198 (683)
T KOG1961|consen 153 IVDGDVNE-PEFLEALEELSHKLKLVELDQ-----------------SNKDAKAL---KDVEPL-------------LDK 198 (683)
T ss_pred HHcCCCCc-hHHHHHHHHHHHHHHhhhhhh-----------------hccchhhh---hhHHHH-------------HHH
Confidence 98888543 399999999985544433110 12222212 222222 346
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCCCCC-HHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHhh
Q 005829 173 LLFEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSSLMP-ITVIQKLQVIIDRLKANGRL--EICISVYAEVRS 249 (675)
Q Consensus 173 Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~l~-~~~i~~L~~Ia~~m~~~g~~--~e~~~~Y~~~R~ 249 (675)
|-.+|+.+.-+..-.-+..-++|.. -+.+| ..++=.-+-+...+..++.. .|..++|++.=+
T Consensus 199 LR~KAi~kir~~IlqkI~~fRkp~t---------------n~qi~~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~ 263 (683)
T KOG1961|consen 199 LRLKAIEKIREFILQKIKAFRKPMT---------------NYQIPQQHALLKYKFFYEFLLENNRELALELRDAYIDTMN 263 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC---------------CcchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 7788888887776666666666643 12334 56777788888888887754 467777776554
Q ss_pred HHHH----HH---HHhcchhhhhh-------------hh---cccc--cHH-----------------------------
Q 005829 250 LNIR----KS---LQKLDLEYLEK-------------WA---KEFD--DVQ----------------------------- 275 (675)
Q Consensus 250 ~~l~----~s---L~~L~~~~~~~-------------~~---~~~~--~~~----------------------------- 275 (675)
.+.. .. |..|.++.+.. +. -++. ++.
T Consensus 264 k~y~~yF~sY~~~L~klq~~~iat~~D~~Gi~fn~skGl~~~fsk~~~~l~~r~tvF~ig~R~~Iltq~d~p~lvphiae 343 (683)
T KOG1961|consen 264 KIYLSYFKSYIRRLTKLQFEEIATKEDLMGIEFNASKGLFFFFSKLPEPLKNRSTVFTIGKRLQILTQLDAPILVPHIAE 343 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccccCccHHHHhccCcchhhcccceeehhhhhhhhhhccccchhhhHHh
Confidence 4322 22 22222221100 00 0000 000
Q ss_pred ----hhhHHHHHHHHHHHHHHHHHhHHHHHHHHhhhccCCcchhhhHHHHHhhHHhHHHHHHhhHH-HhhcCCChHHHHH
Q 005829 276 ----DIEGLIGNWCKHLELVVKHVFEPECKLCSDVFNKIGLDICNCCFAKIAIQSGILSFLQFGKN-VTESNKDPVKLLR 350 (675)
Q Consensus 276 ----~le~~I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll~f~~~-va~~~r~~~klf~ 350 (675)
-.|..++.|-.++ .-=..+||-.|..-|.- .++....+|.+|- .+++...+..-+. |+. ..+.+.
T Consensus 344 ~~k~~~E~lfrs~~~al----~dn~tsEYlFl~efF~~-~gd~~~~if~aIf-~~tls~~~k~~~~~Is~----~~DaIg 413 (683)
T KOG1961|consen 344 ANKYYIEALFRSLHLAL----LDNATSEYLFLEEFFAV-SGDQAEDIFYAIF-GKTLSVILKYLESLISD----CYDAIG 413 (683)
T ss_pred cCCCcHHHHHHHHHHHH----HhcchhHHHHHHHHHhh-cCchHHHHHHHHh-cccHHHHHHHHHHHHHH----HHHHHH
Confidence 0223344444333 22346799999998843 2344566788776 3455444443333 332 234444
Q ss_pred HHHHHHHHHhhh--------HHHHhhhCCCChhHHHHHHHHHHHHHHHhHHHHHHhh-HHHhhcccCCCCC--CCCccch
Q 005829 351 LLEIFAALDKVR--------VDFNRLFGGEAYGDIQSLIRDLIRRVVNGACEIFLEL-PLQVKLQRQVSPP--PDGSVPR 419 (675)
Q Consensus 351 lLdm~e~L~~l~--------p~~~~lf~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~-~~~i~~~~~~~~p--~dG~Vh~ 419 (675)
+|-+.-...+++ |.+++-+. ....-++-++... .++ .+.++.-..+..+ .|.+-|+
T Consensus 414 vll~Iri~~k~ql~~~rR~VP~ld~y~n--------~v~~~LWPRFq~V-----~d~h~eSlR~~di~~~~~~~d~rPHy 480 (683)
T KOG1961|consen 414 VLLCIRIIHKLQLIAARRRVPALDSYWN--------SVLIFLWPRFQLV-----MDMHCESLRKADITTLWEKLDTRPHY 480 (683)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhHHH--------HHHHHHHHHHHHH-----HHHHHHHHHhcChhhcccccCCCchH
Confidence 443333333332 22222111 1122222222211 111 1223322222333 7889999
Q ss_pred hhHHHHHHHHHhhcCCcHHHHHHHHhHhhcccccchhcchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceee
Q 005829 420 LVLFVTDYCNQLLGDNYRPILTQVLVIHQSWKQAKYEEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHF 499 (675)
Q Consensus 420 lT~~vmnyl~~L~~~~y~~~L~~il~~~~~w~~~~~~~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI 499 (675)
+|+-.-.|+..+. .+-...+. + ..+......+....+.-+..-++.++++--+.+||.||+.||
T Consensus 481 itrRyAEf~ss~~---------~l~v~~~~----~---~~~~~ll~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdli 544 (683)
T KOG1961|consen 481 ITRRYAEFLSSFL---------MLNVTYGN----E---QDVERLLERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLI 544 (683)
T ss_pred HHHHHHHHHHHHH---------HHHHhccc----c---chHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeeccHHHH
Confidence 9998766665544 11111211 1 113444455555555666677888999999999999999998
Q ss_pred e-ecc
Q 005829 500 C-NLK 503 (675)
Q Consensus 500 ~-~v~ 503 (675)
. -+.
T Consensus 545 l~vL~ 549 (683)
T KOG1961|consen 545 LGVLM 549 (683)
T ss_pred HHHHH
Confidence 8 544
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=98.53 E-value=0.0029 Score=75.13 Aligned_cols=544 Identities=14% Similarity=0.129 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhh
Q 005829 7 IESLLAARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSV 86 (675)
Q Consensus 7 ~~~~~a~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~ 86 (675)
+-.....+..|.+.++.+-.--+.|+ ..|+.++..|..+.+.|.-|-.+.+.|+....|=..-++.++.+++..+..
T Consensus 25 l~~s~~~v~~l~~~ld~a~~e~d~le---~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~ 101 (701)
T PF09763_consen 25 LLESEKQVNSLMEYLDEALAECDELE---SWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIP 101 (701)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444556666677777766667777 999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhhcccc---cChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHh
Q 005829 87 QELEKSLISESH---SDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAY 163 (675)
Q Consensus 87 ~~~e~~i~~gp~---~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~ 163 (675)
.+....|..+|- .++....+++..|..|+.-+..... ..++.+ +.++.++..
T Consensus 102 ~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~------------------~~~~~~-------~~M~Av~er 156 (701)
T PF09763_consen 102 EEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLE------------------KLDPGL-------GQMRAVKER 156 (701)
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccc------------------cCCCcH-------HHHHHHHHH
Confidence 999999988872 5688888999999988866553200 011111 112222222
Q ss_pred hHHH-HhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCCCCC-HHHHHHHHHHHHHHHHCCC--chH
Q 005829 164 EASA-RLNGGLLFEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSSLMP-ITVIQKLQVIIDRLKANGR--LEI 239 (675)
Q Consensus 164 ~~~~-~~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~l~-~~~i~~L~~Ia~~m~~~g~--~~e 239 (675)
.... .....-.+..+..|...|..+........+.... ......+.+.+ -..+-....+..|+-..+. -..
T Consensus 157 ~~~~~~~~~~F~~r~~~~l~~~F~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~~~~L~~ys~Li~~lK~~d~~~y~~ 231 (701)
T PF09763_consen 157 REEYEKVSDKFCKRLSRFLNNMFKNLVDELLSDKDSFSQ-----SGKLSLPKHSSLHNELLPYSGLILWLKEVDPESYQA 231 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-----cccCChHHHHHHHHHHHhHHHHHHHHHHcCHHHHHH
Confidence 2211 1123456666777778886665543221110000 00000000000 1133334456666654421 134
Q ss_pred HHHHHHHHhhHHHHHHHHhcchhhhhhhhc--------------c---c-ccHHh--------------h----------
Q 005829 240 CISVYAEVRSLNIRKSLQKLDLEYLEKWAK--------------E---F-DDVQD--------------I---------- 277 (675)
Q Consensus 240 ~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~--------------~---~-~~~~~--------------l---------- 277 (675)
+++.|...=+...++-+..+= +....... + . ..|-. +
T Consensus 232 L~~~Y~~~~~~ly~~e~~~~~-~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~s~~~~~~~~~~~~~ 310 (701)
T PF09763_consen 232 LIKAYNSSMSKLYEREIRDFF-EALKKSISKASGDENDESLFTSSSPELSTEWISLRKSRKLTLDRSKTLRNIDMWAPSP 310 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcchhhhhcccccccchhcccccccccccccCCCCccchhcccccCCC
Confidence 666666665555444443331 11110000 0 0 00000 0
Q ss_pred -hHHHHHHHHHHHH---HHHHHhHHHHHHHHhhhccCCcchhhhHHHHHhh----------------------------H
Q 005829 278 -EGLIGNWCKHLEL---VVKHVFEPECKLCSDVFNKIGLDICNCCFAKIAI----------------------------Q 325 (675)
Q Consensus 278 -e~~I~~w~~~l~~---~v~~l~~~E~~L~~~Vf~~~~~~~~~~~F~~i~~----------------------------~ 325 (675)
.++-...-.++.. .+.-+...|...|.+.|.-... ...-|.+.+. .
T Consensus 311 ~~~~~~~~~~a~~~~L~el~pl~~~EQ~Fi~~FFhl~s~--~~~~f~~~v~~~~~~~r~~~~~~~~~~~~~d~~~~~~~~ 388 (701)
T PF09763_consen 311 KSSGKLRFDEAFEQALEELEPLCIREQNFIIDFFHLSSN--STLDFADYVKQSSPSERRSSDLSSSKPMEPDRESAKDVR 388 (701)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ccCChhhHHhcCCcccccccccccccccCcchhHHHHHH
Confidence 0000012222222 2345677899999998853110 0011111110 0
Q ss_pred HhHHHHHHhh-----HHHh-hcCCChHHHHHHHHHHHHHHhhhHHHHhhhCCCChhHHHHHHHHHHHHHHHhHHHHHHhh
Q 005829 326 SGILSFLQFG-----KNVT-ESNKDPVKLLRLLEIFAALDKVRVDFNRLFGGEAYGDIQSLIRDLIRRVVNGACEIFLEL 399 (675)
Q Consensus 326 ~~i~~ll~f~-----~~va-~~~r~~~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~ 399 (675)
..|..++.+- .-|. ..+.+|-.+..+|-+.+. ..-.. .+ + -..-+..++.++.....+.|..|
T Consensus 389 ~~m~~iF~~l~~~l~~~v~~~~~~dp~~~~~~l~~le~---~~~~~----~~-s---~~~fl~~~L~~l~~~~k~~f~~f 457 (701)
T PF09763_consen 389 QMMSEIFGFLENELQSFVDWAEKNDPLQCVSMLVYLER---YIKSL----EQ-S---NQSFLSNLLQKLQVRLKRLFDKF 457 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHH---HHHHh----cC-c---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 0000 012233322222222111 11111 11 1 12346678888889999999998
Q ss_pred HH-HhhcccCCCC--CCCCccchhhHHHHHHHHHhhcCCcHHHHHHHHhHhhcccccchhcchHHHHHHHHHHHHHHhHH
Q 005829 400 PL-QVKLQRQVSP--PPDGSVPRLVLFVTDYCNQLLGDNYRPILTQVLVIHQSWKQAKYEEGLLTRLIYSVIKEIALNLD 476 (675)
Q Consensus 400 ~~-~i~~~~~~~~--p~dG~Vh~lT~~vmnyl~~L~~~~y~~~L~~il~~~~~w~~~~~~~~~l~~~i~~ii~~L~~nLe 476 (675)
+. +|+......+ -.-.||-| |++.+. .|-..++.++.....+ ......+......++.++..+|+
T Consensus 458 v~~Qi~~ie~~k~~~k~r~GVl~-------~i~~fp--~f~~~~E~~~~~~~~~---~~~r~~vd~aY~kl~~a~~~~l~ 525 (701)
T PF09763_consen 458 VDEQIKSIEETKVSKKKRKGVLP-------FIKKFP--EFVKRVESMFSGAERA---REDRSLVDKAYEKLVRAMFDSLE 525 (701)
T ss_pred HHHHHHHHHHhccccCCCCccch-------HHHHHH--HHHHHHHHHHcccccc---chHHHHHHHHHHHHHHHHHHHHH
Confidence 73 3433222111 12236655 444444 4444555665543221 11234577788899999999999
Q ss_pred HhhccCC-----------Cccchhhhccccceeee-eccCCCccccccchHHHHHHHH----HHHHHHhHHHhhHHHHHh
Q 005829 477 EWSNSHQ-----------DITLSYLFVMNNHCHFC-NLKGTKLGDMMGDSWVKAHEQY----KNYYAGLYVRESWGKLFS 540 (675)
Q Consensus 477 ~Ksk~y~-----------d~aL~~iFLmNN~~yI~-~v~~S~L~~lLg~~~~~~~~~~----~~~~~~~Y~~~sW~~vl~ 540 (675)
..++.-+ ...-.+|.++=|+||+. .+..-.....| +.|.++-... .+.|...+++..++++..
T Consensus 526 ~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l-~~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~ 604 (701)
T PF09763_consen 526 RIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVL-EEFRKEAKQIYDEHLEAYVTFLLRRPFGKLLD 604 (701)
T ss_pred HhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9987543 23557999999999988 76553331222 3455554444 444555566666777776
Q ss_pred hhhcc-----C-ccCC-CCCCcccHHHHHHHHHH-----HHHHHHHHHHhcccce-------ecChHHHHHHHHHHHHHH
Q 005829 541 FLRQD-----G-LIAS-PSRKASNRELVKKKLKD-----FYQTFDYMVKKHSCWV-------VTDKNSREKICQLVVQAF 601 (675)
Q Consensus 541 ~L~~~-----~-~~~~-~~~~~~~r~~iKekfk~-----FN~~Fee~~~~q~~w~-------VpD~~LR~~Lr~~i~~~v 601 (675)
+.... . .+.. +.-.+-+|+.+|.-++. .-...+.+|++=..-- ..+..|-+.+=.++.+..
T Consensus 605 F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~ 684 (701)
T PF09763_consen 605 FFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEF 684 (701)
T ss_pred HHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHH
Confidence 65431 1 0100 01122345555554444 5567888887654444 335566666666666666
Q ss_pred HHHHHHHHH
Q 005829 602 LPVYRSYLQ 610 (675)
Q Consensus 602 ~P~Y~~F~~ 610 (675)
+-.|.+|++
T Consensus 685 i~~~~~l~~ 693 (701)
T PF09763_consen 685 IRQYERLET 693 (701)
T ss_pred HHHHHHHHH
Confidence 666665553
No 8
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=97.51 E-value=0.0024 Score=61.13 Aligned_cols=140 Identities=13% Similarity=0.167 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHhhhccc
Q 005829 18 NSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKSLISES 97 (675)
Q Consensus 18 ~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~~gp 97 (675)
.+..+....+-.+++++...|+.+......++..-..++...+.|-.-+.+++.....|.+-+.+|+....+...|..++
T Consensus 10 ~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~ 89 (157)
T PF04136_consen 10 QQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPG 89 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCC
Confidence 33333444444444444466667777777777777778888999999999999999999999999999988888774432
Q ss_pred -ccChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHHhhhhHHHH
Q 005829 98 -HSDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASARLNGGLLFE 176 (675)
Q Consensus 98 -~~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~Ll~~ 176 (675)
...=+.|+..|.+|++++.|+..|+.+. |+- .+. .++..++..
T Consensus 90 ~sV~~~~F~~~L~~LD~cl~Fl~~h~~fk-----ea~-----------~Y~--------------------~rf~q~ltR 133 (157)
T PF04136_consen 90 SSVNSDSFKPMLSRLDECLEFLEEHPNFK-----EAE-----------VYL--------------------IRFRQCLTR 133 (157)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhhhhh-----hhH-----------HHH--------------------HHHHHHHHH
Confidence 3567899999999999999999987543 110 111 236789999
Q ss_pred HHHHHHHHHHHHHHhhC
Q 005829 177 ALNYLESEFNRLVTENT 193 (675)
Q Consensus 177 a~~~Le~eF~~lL~~~s 193 (675)
|+.-+..+|...|...+
T Consensus 134 Al~lIk~y~~~~l~~~~ 150 (157)
T PF04136_consen 134 ALTLIKNYVVNTLRSAT 150 (157)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998754
No 9
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.78 Score=52.54 Aligned_cols=114 Identities=17% Similarity=0.282 Sum_probs=76.7
Q ss_pred chHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHhhhccc--ccChHHHHHHHHHHHH
Q 005829 36 SRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKSLISES--HSDIFGYLVVLKQLEE 113 (675)
Q Consensus 36 ~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~~gp--~~~l~~Yl~al~~L~~ 113 (675)
.-....+++++.+..+---++.+-.+|..+.++|-+.|. +|+....+-..+ +.| ..+=.+|...+.+|++
T Consensus 126 ~k~~~vs~kt~~l~eace~l~~eq~kl~elae~I~k~L~-------yF~~le~l~~~l-~~pt~~v~~~sF~~~l~~ld~ 197 (733)
T KOG2604|consen 126 KKFEFVSQKTSALHEACEQLLEEQSKLSELAEGIRKKLH-------YFAELEELNRRL-NHPTLSVGKVSFKEMLAKLDE 197 (733)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHhh-cCcchhhhhhhHHHHHHHHHH
Confidence 444445556666666666666777777777777766654 344443333334 334 3678999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhC
Q 005829 114 AMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASARLNGGLLFEALNYLESEFNRLVTENT 193 (675)
Q Consensus 114 a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~s 193 (675)
++.|+.+|+.+. |.--|+ ++ +...+.+|+.-.-.+|.++|.+-.
T Consensus 198 ci~~l~en~~fk-----d~~~Y~--------------------~k-----------~kqcL~kA~~lik~y~~~vlkq~t 241 (733)
T KOG2604|consen 198 CIMFLEENPDFK-----DAPAYL--------------------GK-----------YKQCLSKALGLIKTYFTNVLKQTT 241 (733)
T ss_pred HHHHHHhCCchh-----hhHHHH--------------------HH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986432 222221 11 457888999999999999998753
No 10
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=2.9 Score=47.75 Aligned_cols=525 Identities=13% Similarity=0.131 Sum_probs=260.6
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHhhhcccc-
Q 005829 20 SLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKSLISESH- 98 (675)
Q Consensus 20 ~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~~gp~- 98 (675)
.|+..-.-.++|+ ..|+++++-|....+.|--|-..++.+...+.|=-+-+..++.|++..++.+.....|..|.-
T Consensus 226 ~ldaAl~~vd~~e---~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~aL~egdf~ 302 (867)
T KOG2148|consen 226 GLDAALNEVDDME---EWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAALTEGDFD 302 (867)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHhcccCCcc
Confidence 3333334444455 888888888888888888888888888888888888899999999999999998888866642
Q ss_pred ---cChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHHHHHHHHHhhHHHH-hhhhHH
Q 005829 99 ---SDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFRILHELLAYEASAR-LNGGLL 174 (675)
Q Consensus 99 ---~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~-~~~~Ll 174 (675)
.++.....+-+-|..++ | ++-|.+ .-.++..+.+.++.. .-..-.
T Consensus 303 ~a~~~ieact~aA~al~q~~-----~------------------~~ldp~--------~l~m~Avkdqr~eleklk~~Fv 351 (867)
T KOG2148|consen 303 EADQGIEACTWAAKALRQLM-----N------------------PNLDPI--------YLNMRAVKDQRAELEKLKATFV 351 (867)
T ss_pred ccchhHHHHHHHHHHHHHhh-----c------------------CCCCHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 25666655555555333 1 122222 223332222222211 112234
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCC-CCC-HHHHHHHHHHHHHHHHCC--CchHHHHHHHHHhhH
Q 005829 175 FEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSS-LMP-ITVIQKLQVIIDRLKANG--RLEICISVYAEVRSL 250 (675)
Q Consensus 175 ~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~-~l~-~~~i~~L~~Ia~~m~~~g--~~~e~~~~Y~~~R~~ 250 (675)
.+.+.-|-+.|.++-.--+... .+. + .....| +-+ -..+..+..+.+|+-+.. +.....+.|.+.=+.
T Consensus 352 rrlssfLnnlF~~l~d~~ssd~---~~h----s-~eL~lPnhs~~~r~l~pya~Lm~wlK~~d~k~~~~l~k~Y~dslnl 423 (867)
T KOG2148|consen 352 RRLSSFLNNLFASLGDFLSSDK---SYH----S-TELTLPNHSDLHRKLRPYARLMQWLKGLDKKCYGGLRKAYCDSLNL 423 (867)
T ss_pred HHHHHHHHHHHHHhcchhhhhh---Hhh----h-hccccCCchHHHHhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHH
Confidence 4555666666666544111000 000 0 000111 111 114445566777887663 334566777776655
Q ss_pred HHHHHHHhcchhhhhhhhccc---ccH------------------HhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 005829 251 NIRKSLQKLDLEYLEKWAKEF---DDV------------------QDIEGLIGNWCKHLELVVKHVFEPECKLCSDVFNK 309 (675)
Q Consensus 251 ~l~~sL~~L~~~~~~~~~~~~---~~~------------------~~le~~I~~w~~~l~~~v~~l~~~E~~L~~~Vf~~ 309 (675)
..++-...+- +.+..+++.. ..| -.+-.....|...+.++=+..|. +|+..|.+.
T Consensus 424 Ly~Re~rnFf-e~lk~kvt~~rnpte~L~gStg~sqks~~~tsa~ssl~~~~~~~~s~l~v~d~~~f~---~l~e~vlae 499 (867)
T KOG2148|consen 424 LYRREARNFF-EELKIKVTVSRNPTEWLEGSTGSSQKSNTDTSAVSSLYAKMLTIFSPLLVADREVFD---QLIETVLAE 499 (867)
T ss_pred HHHHHHHHHH-HHHHHhccccCCCcccccCCcccccccCCCccchhhHHhhhccccCchhhhhHHHHH---HHHHHHHHh
Confidence 5554444431 1111111111 011 11112222333332222111111 222333332
Q ss_pred CCcc-hhhhHHH-HHhhHHhHHHHHHhhH---HH-hh-------cCCChHH--H-HHHHHHHHHHHhhhHHHHhhh----
Q 005829 310 IGLD-ICNCCFA-KIAIQSGILSFLQFGK---NV-TE-------SNKDPVK--L-LRLLEIFAALDKVRVDFNRLF---- 369 (675)
Q Consensus 310 ~~~~-~~~~~F~-~i~~~~~i~~ll~f~~---~v-a~-------~~r~~~k--l-f~lLdm~e~L~~l~p~~~~lf---- 369 (675)
+.+. .++.-|. .+.. ..-..+-.+-+ .+ .. .+.+|.+ + -.+.++|++|..-+..|-+.+
T Consensus 500 Lep~~~aeqdF~~kFF~-s~s~~ma~~dd~d~gi~ds~s~dg~p~k~s~~ne~vr~~m~~Lfd~ie~el~sfi~~~~kid 578 (867)
T KOG2148|consen 500 LEPPGLAEQDFVKKFFH-SQSNNMAGADDDDLGIMDSDSLDGKPGKNSPDNEAVRESMQDLFDCIEPELYSFIDWAYKID 578 (867)
T ss_pred cCCcccchhHHHHHHHh-hCccccccccccccccccccccCCCCCCCCchHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 2110 1111111 0000 00000000100 00 00 1223332 2 234466666653222221111
Q ss_pred ----------------CCCChhHHHHHHHHHHHHHHHhHHHHHHhhHH----HhhcccCCCCCCCCccchhhHHHHHHHH
Q 005829 370 ----------------GGEAYGDIQSLIRDLIRRVVNGACEIFLELPL----QVKLQRQVSPPPDGSVPRLVLFVTDYCN 429 (675)
Q Consensus 370 ----------------~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~~~----~i~~~~~~~~p~dG~Vh~lT~~vmnyl~ 429 (675)
++... +-.+-+.-.+..+.-.+++-|..|+. +|+.- ..+.-.-|||-| |+-
T Consensus 579 p~n~l~mfv~mt~~vls~Q~~-Dpasfls~tlgsllv~VkrqFdrfiq~qc~qieev-ki~kksk~gILP-------yv~ 649 (867)
T KOG2148|consen 579 PFNSLYMFVIMTEHVLSAQKA-DPASFLSLTLGSLLVRVKRQFDRFIQNQCSQIEEV-KIAKKSKIGILP-------YVF 649 (867)
T ss_pred chhhhhHHHHHHHHhhccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccccc-------cHH
Confidence 12100 11223344455555666777777752 22211 111224456766 444
Q ss_pred HhhcCCcHHHHHHHHhHhhcccccchhcchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-eccCCCcc
Q 005829 430 QLLGDNYRPILTQVLVIHQSWKQAKYEEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NLKGTKLG 508 (675)
Q Consensus 430 ~L~~~~y~~~L~~il~~~~~w~~~~~~~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v~~S~L~ 508 (675)
.+. ++-...+.++.... ..+.+...-..++.++..+++.-|..|+... +.+-+|-|+|++. .+-. |.
T Consensus 650 rFe--nfa~raE~if~nae-------rRtdlekaYtklvravfvgiek~Aqq~pKtp-~dVv~mENyh~~y~tLs~--Lk 717 (867)
T KOG2148|consen 650 RFE--NFARRAEIIFENAE-------RRTDLEKAYTKLVRAVFVGIEKIAQQDPKTP-ADVVLMENYHHFYATLSD--LK 717 (867)
T ss_pred HHH--HHHHHHHHHHhhhh-------hcchHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHhhHHHHHHHHHH--Hh
Confidence 444 45566777776321 2245666777888899999999998887732 4577999999988 5422 22
Q ss_pred ccccchHHHHHHHHHHHHHHhHHHhhHHHHHhhhhc--cCcc--CCCC------------CCcccHHHHHHHHHH-HHHH
Q 005829 509 DMMGDSWVKAHEQYKNYYAGLYVRESWGKLFSFLRQ--DGLI--ASPS------------RKASNRELVKKKLKD-FYQT 571 (675)
Q Consensus 509 ~lLg~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~--~~~~--~~~~------------~~~~~r~~iKekfk~-FN~~ 571 (675)
-..-+.-...+......+.+.|...+.|..+..|.. +|.. ...| ++-.-|..|++--.+ --.+
T Consensus 718 is~lda~kkeaka~~~dhl~ayV~~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk~elrkvi~qypgkEVkKg 797 (867)
T KOG2148|consen 718 ISCLDAAKKEAKALYADHLAAYVKESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSKQELRKVIKQYPGKEVKKG 797 (867)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhHHHHHHHHHHcchhhHHHH
Confidence 212222333455666667888888888887776642 1210 1111 011223333333333 5667
Q ss_pred HHHHHHhcccceecChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005829 572 FDYMVKKHSCWVVTDKNSREKICQLVVQAFLPVYRSYLQNY 612 (675)
Q Consensus 572 Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry 612 (675)
+|.+|++=..--+...+|=+.+=....+-.+--|..|-+.-
T Consensus 798 lenlYKKveKnL~aeenLLqvvW~~mqeeFi~qy~~f~~lI 838 (867)
T KOG2148|consen 798 LENLYKKVEKNLLAEENLLQVVWHKMQEEFIDQYESFEQLI 838 (867)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888876655566788888888888888888888777654
No 11
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=96.24 E-value=4.2 Score=48.96 Aligned_cols=132 Identities=17% Similarity=0.288 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHhhHHHHHHHHhcchhhhhhhhcccccHHhhhHHHHHHHHHHHHHHHHHhHHHH
Q 005829 221 IQKLQVIIDRLKANGRLEICISVYAEVRSLNIRKSLQKLDLEYLEKWAKEFDDVQDIEGLIGNWCKHLELVVKHVFEPEC 300 (675)
Q Consensus 221 i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~le~~I~~w~~~l~~~v~~l~~~E~ 300 (675)
+...+...+-|..-|...++.+-|.++|...+.+.=.... . .+ ....+..|...+--.+..++..|.
T Consensus 200 ~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~-------~--~~----~~~~~~~~L~~fyd~ll~~l~~E~ 266 (766)
T PF10191_consen 200 VDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYC-------Q--SD----QSQSFAEWLPSFYDELLSLLHQEL 266 (766)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh-------h--hc----cchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666699999999999999987653222211 0 00 013456777777777788999999
Q ss_pred HHHHhhhccCCcchhhhHHHHHhhHHhHHHHH-HhhHHHhhc-CCC-hH-HHHHHHHHHHHHHhhhHHHHhhhCC
Q 005829 301 KLCSDVFNKIGLDICNCCFAKIAIQSGILSFL-QFGKNVTES-NKD-PV-KLLRLLEIFAALDKVRVDFNRLFGG 371 (675)
Q Consensus 301 ~L~~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll-~f~~~va~~-~r~-~~-klf~lLdm~e~L~~l~p~~~~lf~~ 371 (675)
+-|.+||+.... +....+.++ +..|- .|...|... ++. |. ++..++++|.+-.++.-.++.+|..
T Consensus 267 ~w~~~vF~~~~~-~~~~ll~~~-----L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 267 KWCSQVFPDESP-VLPKLLAET-----LSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHHHHHcCCchh-HHHHHHHHH-----HHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998322 222233322 22222 255544322 222 33 5899999999998888888888765
No 12
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=90.27 E-value=3 Score=45.91 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=61.9
Q ss_pred chHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHhhhcccccChHHHHHHHHHHH
Q 005829 36 SRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKSLISESHSDIFGYLVVLKQLE 112 (675)
Q Consensus 36 ~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~~gp~~~l~~Yl~al~~L~ 112 (675)
..+..+..+-...|..|.-|-.+..+|...++|+-.++..+..+...-+....++..+...-=.+...-|.+|.+|-
T Consensus 71 ~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 71 EKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77777888889999999999999999999999999999999999999999999998885432233444444444443
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=78.01 E-value=53 Score=34.67 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhhhHhHhhhc
Q 005829 18 NSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQELEKSLIS 95 (675)
Q Consensus 18 ~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~~ 95 (675)
.+++..-.++..++..+.....+...+|..+.+.+.--.-..-++.+.++|+...+..+..|....+....++..+..
T Consensus 63 ~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~ 140 (291)
T PF10475_consen 63 FQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEE 140 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444455444455555555555555433322334467778888888888888888888888888887743
No 14
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=73.78 E-value=1.4e+02 Score=32.31 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCC--chHHHHHHHHHhhHHHHHHHHhcchhhhhhhhcccccHHhhhHHHHHHHHHHHH
Q 005829 225 QVIIDRLKANGR--LEICISVYAEVRSLNIRKSLQKLDLEYLEKWAKEFDDVQDIEGLIGNWCKHLEL 290 (675)
Q Consensus 225 ~~Ia~~m~~~g~--~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~le~~I~~w~~~l~~ 290 (675)
-+|..|+...+. ..+....|-..|..++...|..+.. .+ ...++++|++..+.
T Consensus 177 ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~---------~~----~~~~lkr~iei~R~ 231 (338)
T PF04124_consen 177 IKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDK---------SD----PYRYLKRYIEIYRE 231 (338)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhh---------hh----HHHHHHHHHHHHHH
Confidence 344444444332 2246678888899999987776641 11 23566666666553
No 15
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.60 E-value=1.4e+02 Score=37.19 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 005829 176 EALNYLESEFNRLVTENT 193 (675)
Q Consensus 176 ~a~~~Le~eF~~lL~~~s 193 (675)
.-+..||.+.+.+|....
T Consensus 1731 aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1731 AELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 334567777777766543
No 16
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=58.65 E-value=1.5e+02 Score=28.96 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=13.3
Q ss_pred CCccchHHHHHHHHHHHHHHH
Q 005829 1 MTEGDSIESLLAARKLLNSSL 21 (675)
Q Consensus 1 ~~~~~~~~~~~a~~~~L~~~L 21 (675)
|++..+++.++..++.|...+
T Consensus 1 ~~~~~~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 1 MAEMSALDILEKRIEELERRV 21 (174)
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655
No 17
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=58.35 E-value=44 Score=32.58 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=9.8
Q ss_pred hHHHHHhhcccchhhhhc
Q 005829 37 RLEEIKERLPSSEAAFRC 54 (675)
Q Consensus 37 ~L~~~~~rl~~le~~i~P 54 (675)
.|+.++.|+..||+.+.|
T Consensus 6 ~l~~Le~Ri~~LE~~v~G 23 (174)
T PF07426_consen 6 ALDILEKRIEELERRVYG 23 (174)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 455555555555555533
No 18
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=56.21 E-value=16 Score=41.27 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccceecChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccCCCCcccccCHHHHH
Q 005829 556 SNRELVKKKLKDFYQTFDYMVKKHSCWVVTDKNSREKICQLVVQAFLPVYRSYLQNYGVLV-EENASGGKYVKYSANDLE 634 (675)
Q Consensus 556 ~~r~~iKekfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~-~~~k~~~KyiKytpe~le 634 (675)
.-|..+-.+.+.|++.|+|+.+.-. +....+..-.|+++|--....+ +|.+.-.-|+-++-..+|
T Consensus 95 ~Lr~~l~s~~r~F~E~f~ell~~ae--------------~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nle 160 (563)
T KOG3821|consen 95 VLRFVLASNARKFDEFFLELLRNAE--------------NSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLE 160 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4477788899999999999987633 3555688889999987765332 344444568899999999
Q ss_pred HHHHhhcC
Q 005829 635 KILSSLFQ 642 (675)
Q Consensus 635 ~~L~~LF~ 642 (675)
++|++||.
T Consensus 161 e~l~eff~ 168 (563)
T KOG3821|consen 161 ETLNEFFA 168 (563)
T ss_pred HHHHHHHH
Confidence 99999885
No 19
>PLN02939 transferase, transferring glycosyl groups
Probab=50.87 E-value=5.5e+02 Score=31.91 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHH
Q 005829 10 LLAARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVV 65 (675)
Q Consensus 10 ~~a~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~ 65 (675)
+..+++.|++.|..-.+....+-+.++-=..++..+..||..+.-.+.++.+|..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (977)
T PLN02939 238 LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPL 293 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccch
Confidence 45666777776666666655544333444444555555555554444455444433
No 20
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=44.86 E-value=1.7e+02 Score=30.48 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhh
Q 005829 8 ESLLAARKLLNSSLD-KSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSV 86 (675)
Q Consensus 8 ~~~~a~~~~L~~~L~-ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~ 86 (675)
+++.+.+..|.++|. +-.++...|...+..|..++.++..+.+.+.=+..-+..+......|..++..+..+.+....-
T Consensus 13 ~kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~ 92 (267)
T PF11887_consen 13 AKLNATLSALATALDGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQ 92 (267)
T ss_pred HHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 567777777777774 3344555555555888888888888888888888888888888888888888877766555443
Q ss_pred h-hHhHhh
Q 005829 87 Q-ELEKSL 93 (675)
Q Consensus 87 ~-~~e~~i 93 (675)
+ ++...|
T Consensus 93 ~~~L~~lL 100 (267)
T PF11887_consen 93 RQQLDALL 100 (267)
T ss_pred HHHHHHHH
Confidence 3 244444
No 21
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=44.43 E-value=6.3e+02 Score=30.25 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHhhHHH
Q 005829 221 IQKLQVIIDRLKANGRLEICISVYAEVRSLNI 252 (675)
Q Consensus 221 i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l 252 (675)
...++.+|..|..-+-...|++.|+..+.-..
T Consensus 128 ~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~ 159 (710)
T PF07393_consen 128 YERMKEFAKVLLEFNGGSSCIDFFINKHEFFI 159 (710)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhChhhh
Confidence 57888889989887666689999999886665
No 22
>PRK10807 paraquat-inducible protein B; Provisional
Probab=42.88 E-value=97 Score=35.91 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=16.0
Q ss_pred hHHHHHHhHHHhhchHHHHHHhhhh
Q 005829 61 SFVVVRNQIDSAIGPAAAVLKVFDS 85 (675)
Q Consensus 61 ~L~~~~~nI~~tl~~~~~v~~~~~~ 85 (675)
..+.+-.++.+|+..++.+++-+..
T Consensus 470 ~~~~Lp~~L~~TL~~l~~~l~~~~~ 494 (547)
T PRK10807 470 SMQQLPADMQKTLRELNRSMQGFQP 494 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4445556777777777776666553
No 23
>PHA01746 hypothetical protein
Probab=38.49 E-value=12 Score=33.16 Aligned_cols=22 Identities=23% Similarity=0.682 Sum_probs=14.0
Q ss_pred HHHHHHhccccccccCCCCcccccCHHH
Q 005829 605 YRSYLQNYGVLVEENASGGKYVKYSAND 632 (675)
Q Consensus 605 Y~~F~~ry~~~~~~~k~~~KyiKytpe~ 632 (675)
-..|+++|++.+ .||+|+||.+
T Consensus 76 Ia~FLeKYS~~L------nkYVkFs~~n 97 (131)
T PHA01746 76 IAEFLEKYSDFL------NEYVKFTPRN 97 (131)
T ss_pred HHHHHHHHHHHH------HHHeeeccCC
Confidence 346777776543 4677887743
No 24
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.90 E-value=42 Score=26.18 Aligned_cols=47 Identities=13% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHhhhhhh
Q 005829 38 LEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKVFDSVQ 87 (675)
Q Consensus 38 L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~~~~~~ 87 (675)
++.++.++++++.+|.-+.++.+.+. ..|++.=..+..++..|+.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~---~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEIS---ESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666544444444433 333333333466777777665
No 25
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=35.89 E-value=11 Score=33.97 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.6
Q ss_pred ccccccCCCCcccccCHHHHH
Q 005829 614 VLVEENASGGKYVKYSANDLE 634 (675)
Q Consensus 614 ~~~~~~k~~~KyiKytpe~le 634 (675)
...++-+||+||.|||-+++.
T Consensus 53 ~vPDYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 53 GVPDYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred CCCCCcCCcccceeeecCCCc
Confidence 335778999999999999984
No 26
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.00 E-value=1.4e+02 Score=26.48 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhh--ccchhhhhHHHHHHhHHHhhchHHHHH
Q 005829 15 KLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFR--CFSMQKCSFVVVRNQIDSAIGPAAAVL 80 (675)
Q Consensus 15 ~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~--Pi~~~t~~L~~~~~nI~~tl~~~~~v~ 80 (675)
..+.--|.++..-...+.+....++..+.|+..+|..+. |-+.+...|+..=.++...+..+++-+
T Consensus 21 ~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 21 GIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444555544455555555777788888888888874 546666666655455544444444433
No 27
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=31.92 E-value=4.1e+02 Score=27.49 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchh-hhhccchhhh----hHHHHHHhHHHhhchHHHHH
Q 005829 6 SIESLLAARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEA-AFRCFSMQKC----SFVVVRNQIDSAIGPAAAVL 80 (675)
Q Consensus 6 ~~~~~~a~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~-~i~Pi~~~t~----~L~~~~~nI~~tl~~~~~v~ 80 (675)
.++.+++.++.|++..+.-..+.+.+...+.++..-...|...+. +...+..... .+..+....+..++.+..+.
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777666666666665333333322222222111 2111111111 22234444444444444444
Q ss_pred HhhhhhhhHhHhhhcccc-----cChHHHHHHHHHHHHHHH-HHHh
Q 005829 81 KVFDSVQELEKSLISESH-----SDIFGYLVVLKQLEEAMK-FLAD 120 (675)
Q Consensus 81 ~~~~~~~~~e~~i~~gp~-----~~l~~Yl~al~~L~~a~~-~l~~ 120 (675)
..+.....-+ ..+|+ .+|.+|+..-++--.++. |+++
T Consensus 149 ~~~~~~~~~~---~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kK 191 (256)
T PF14932_consen 149 SELAHAHSGQ---QQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKK 191 (256)
T ss_pred HHHHHhcccc---cCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333221 12332 589999998888887776 4554
No 28
>COG2733 Predicted membrane protein [Function unknown]
Probab=31.25 E-value=2.8e+02 Score=30.51 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=57.0
Q ss_pred HHhHHHhhHHHHHhhhhccCccCCCCCCcccHHHH-HHHHHHHHHHHHHHHHhcccceecChHHHHHHHHHHHH---HHH
Q 005829 527 AGLYVRESWGKLFSFLRQDGLIASPSRKASNRELV-KKKLKDFYQTFDYMVKKHSCWVVTDKNSREKICQLVVQ---AFL 602 (675)
Q Consensus 527 ~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~r~~i-Kekfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~---~v~ 602 (675)
...|....|+.+..++..+-.. +-..+ |--++.|++-++++ +.|++||..|..-+.+ .++
T Consensus 291 i~~~~~~~w~~~~~~l~~D~e~--------~~s~l~~~l~~~~~~~Ge~l--------~~D~~lr~kln~~~~~aa~~l~ 354 (415)
T COG2733 291 IATAAGDMWTSLSEWLKEDYES--------EDSMLRKRLARAVQSVGEEL--------IADDALRAKLNEHLVQAAERLA 354 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcccC--------chhHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999888754211 11223 34466777777776 4599999988765433 344
Q ss_pred HHHHHHHHhccccccccCCCCcccccCHHHHHHHHHhh
Q 005829 603 PVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSL 640 (675)
Q Consensus 603 P~Y~~F~~ry~~~~~~~k~~~KyiKytpe~le~~L~~L 640 (675)
+-|..+..++-. + --=+|+.+++.++|..-
T Consensus 355 e~~~~~it~~I~--d------Tv~~wD~~elsr~iel~ 384 (415)
T COG2733 355 EEKHAEITKHIS--D------TVKRWDAEELSRQIELN 384 (415)
T ss_pred HHHhHHHHHHHH--H------HHhhcCHHHHHHHHHHh
Confidence 555555555421 1 12268999999988653
No 29
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.42 E-value=8.1e+02 Score=27.70 Aligned_cols=18 Identities=28% Similarity=0.113 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005829 171 GGLLFEALNYLESEFNRL 188 (675)
Q Consensus 171 ~~Ll~~a~~~Le~eF~~l 188 (675)
....++-+.+||.|...+
T Consensus 528 ~~a~~~E~eklE~el~~l 545 (622)
T COG5185 528 LVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456677789999988765
No 30
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=26.48 E-value=99 Score=24.07 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccch
Q 005829 10 LLAARKL-LNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSM 57 (675)
Q Consensus 10 ~~a~~~~-L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~ 57 (675)
+.+.++- |++-=.|=..++++|- ++++.+..|+-.||++|.-+-.
T Consensus 4 lt~~v~~lL~qmq~kFq~mS~~I~---~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 4 LTAFVQNLLQQMQDKFQTMSDQIL---GRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHH
Confidence 3344443 3444457788888888 8999999999999998765543
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.19 E-value=6.9e+02 Score=27.03 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhhcchHHHHHhhcccchhhhhccchhhhh-HH----HHHHhHHHhhch----H
Q 005829 7 IESLLAARKLLNSSLDKSRAVALA-LGKTGSRLEEIKERLPSSEAAFRCFSMQKCS-FV----VVRNQIDSAIGP----A 76 (675)
Q Consensus 7 ~~~~~a~~~~L~~~L~ks~~l~~~-i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~-L~----~~~~nI~~tl~~----~ 76 (675)
.++.......+.++|.+.++--+. ..+.....+.+++++..+...+-=+...... |. ...-+||.++.+ .
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~ 302 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLY 302 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHH
Confidence 344444555555666554443332 2222244555555555444433222111111 00 111235555544 3
Q ss_pred HHHHHhhhhhhhHhHhhhc---c---cccChHHHHHHHHHHHHHHHHHH
Q 005829 77 AAVLKVFDSVQELEKSLIS---E---SHSDIFGYLVVLKQLEEAMKFLA 119 (675)
Q Consensus 77 ~~v~~~~~~~~~~e~~i~~---g---p~~~l~~Yl~al~~L~~a~~~l~ 119 (675)
.++++.|-.....|..|.. + -..+++.||.-|..|-.-.=|+.
T Consensus 303 kq~l~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQF~~r 351 (365)
T KOG2391|consen 303 KQILECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQFILR 351 (365)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555442 1 12579999999888776553333
No 32
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=25.27 E-value=3.4e+02 Score=29.87 Aligned_cols=8 Identities=50% Similarity=0.235 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 005829 104 YLVVLKQL 111 (675)
Q Consensus 104 Yl~al~~L 111 (675)
+.+.|.+|
T Consensus 355 ~r~~Lr~l 362 (370)
T PLN03094 355 TRRNLKQL 362 (370)
T ss_pred HHHHHHHH
Confidence 33333333
No 33
>PHA03332 membrane glycoprotein; Provisional
Probab=25.24 E-value=5.8e+02 Score=31.77 Aligned_cols=105 Identities=13% Similarity=0.100 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHH----HHHhhhhhhhHh
Q 005829 15 KLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAA----VLKVFDSVQELE 90 (675)
Q Consensus 15 ~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~----v~~~~~~~~~~e 90 (675)
..|-++.+...++.++|.++..+.+...+...++.++|.-|- ..+++||+.+-+-++. |-..+.....--
T Consensus 884 ~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kis------atl~~nI~avNgRIs~Led~VN~r~~~v~~~i 957 (1328)
T PHA03332 884 NQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKIS------ATLDNNIRAVNGRVSDLEDQVNLRFLAVATNF 957 (1328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------HHHHhhHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666666665544332 2456777777666544 344444444433
Q ss_pred HhhhcccccChHHHHHHHHHHHHHHHHHHhhhHHH
Q 005829 91 KSLISESHSDIFGYLVVLKQLEEAMKFLADNCRLA 125 (675)
Q Consensus 91 ~~i~~gp~~~l~~Yl~al~~L~~a~~~l~~~~~~~ 125 (675)
+.|...-......-=+.+++-..|.-|.+..++++
T Consensus 958 ntLA~ql~~~~~~~N~~ie~~~aaalyYQQlnslt 992 (1328)
T PHA03332 958 NTLATQLKELGTTTNERIEEVMAAALYYQQLNSLT 992 (1328)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433322233333345566666667777665544
No 34
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=23.94 E-value=3.9e+02 Score=27.80 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=26.5
Q ss_pred chHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhhchHHHHHHh
Q 005829 36 SRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAIGPAAAVLKV 82 (675)
Q Consensus 36 ~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl~~~~~v~~~ 82 (675)
...+.+.++...+.+.+.-+..-+..+......|..++..+..+...
T Consensus 178 ~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~ 224 (291)
T TIGR00996 178 QLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQ 224 (291)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44555555555555555545455556666666666666665555443
No 35
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.79 E-value=7.8e+02 Score=26.33 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhcccchhhhhccc-hhhhhHHHHHHhHHHhhchHHH
Q 005829 6 SIESLLAARKLLNSSLDKSRAVALALGKTGSRLEEIKERLPSSEAAFRCFS-MQKCSFVVVRNQIDSAIGPAAA 78 (675)
Q Consensus 6 ~~~~~~a~~~~L~~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~-~~t~~L~~~~~nI~~tl~~~~~ 78 (675)
.++.+..+...|.+.++.-+.+...+. .+...+...+..+.+....+. .+-..|..++.-+...-..+..
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~~~~l~---~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDELLPKLR---ERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888877 777787777777777655433 4444566666655555555543
No 36
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.13 E-value=9.8e+02 Score=27.74 Aligned_cols=74 Identities=15% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHhhhcchHHHHHhhcccchhhhhccchhhh-hHHHHHHh------HHHhhchHHHHHHhhhhhhhHhHhhhccc
Q 005829 25 RAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKC-SFVVVRNQ------IDSAIGPAAAVLKVFDSVQELEKSLISES 97 (675)
Q Consensus 25 ~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~-~L~~~~~n------I~~tl~~~~~v~~~~~~~~~~e~~i~~gp 97 (675)
-.|+.++.+.+..|..|++=|.++...|.-+++... ...+++.. +..-.-.+-+.+.++..+.+++.+|..-|
T Consensus 78 VnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~p 157 (705)
T KOG2307|consen 78 VNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPP 157 (705)
T ss_pred HhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345555555556666666666666665555554443 22222212 22223335556666666677777776555
Q ss_pred c
Q 005829 98 H 98 (675)
Q Consensus 98 ~ 98 (675)
+
T Consensus 158 s 158 (705)
T KOG2307|consen 158 S 158 (705)
T ss_pred c
Confidence 4
No 37
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=21.97 E-value=5.8e+02 Score=31.32 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccceec--ChHHHHHHHHHHHHHHHHHHHHHH
Q 005829 558 RELVKKKLKDFYQTFDYMVKKHSCWVVT--DKNSREKICQLVVQAFLPVYRSYL 609 (675)
Q Consensus 558 r~~iKekfk~FN~~Fee~~~~q~~w~Vp--D~~LR~~Lr~~i~~~v~P~Y~~F~ 609 (675)
|+.|-.-.|.=| |++++.+|-.-.+- -| |.+.+|.+....|||+|.+=-
T Consensus 1014 kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~-lQ~a~resm~SsviPafEKSc 1064 (1283)
T KOG1916|consen 1014 KENINQLLKSKN--LEDTVARQIQAQFQTSGP-LQEALRESMESSVIPAFEKSC 1064 (1283)
T ss_pred HHHHHHHHhhcc--HHHHHHHHHHHHHhccch-HHHHHHHHhhhhccHHHHHHH
Confidence 455555566556 77777776544442 34 999999999999999997643
No 38
>PRK10807 paraquat-inducible protein B; Provisional
Probab=21.58 E-value=3.9e+02 Score=31.03 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=4.0
Q ss_pred HHHhhhcc
Q 005829 132 IAEALEGN 139 (675)
Q Consensus 132 ~~~~~~~~ 139 (675)
.+.+|+++
T Consensus 519 l~~~L~~~ 526 (547)
T PRK10807 519 VLKTLNEK 526 (547)
T ss_pred HHHHHHhC
Confidence 44555553
No 39
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.11 E-value=5.1e+02 Score=25.87 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHhhcccchhhh------hccchhhhhHHHHHH--hHHHhhchHHHHHHhhhhhhhHh
Q 005829 19 SSLDKSRAVALALGKTGSRLEEIKERLPSSEAAF------RCFSMQKCSFVVVRN--QIDSAIGPAAAVLKVFDSVQELE 90 (675)
Q Consensus 19 ~~L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i------~Pi~~~t~~L~~~~~--nI~~tl~~~~~v~~~~~~~~~~e 90 (675)
+.|.|-+...+++..+++.|..|+...-.||.+= .-+..-+..+.+.|. +||++=...+.|.+.-+...+..
T Consensus 65 qaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIs 144 (221)
T KOG1656|consen 65 QALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEIS 144 (221)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777878888888888777777641 111111223334443 57777777888888888777776
Q ss_pred Hhhhccc
Q 005829 91 KSLISES 97 (675)
Q Consensus 91 ~~i~~gp 97 (675)
.-| +.|
T Consensus 145 eAi-S~P 150 (221)
T KOG1656|consen 145 EAI-SAP 150 (221)
T ss_pred HHH-hCc
Confidence 666 444
No 40
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=20.67 E-value=80 Score=36.68 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccceecChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccCCCCcccccCHHHHHHH
Q 005829 558 RELVKKKLKDFYQTFDYMVKKHSCWVVTDKNSREKICQLVVQAFLPVYRSYLQNYGVLV-EENASGGKYVKYSANDLEKI 636 (675)
Q Consensus 558 r~~iKekfk~FN~~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~-~~~k~~~KyiKytpe~le~~ 636 (675)
+..+..+.+.|.+.|+++.+.- .+....+..-.|+.+|......+ ++...-..|+..+...|+.+
T Consensus 89 ~~~l~~~~~~F~~~f~~ll~~s--------------e~~~~~~F~~~Y~~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~ 154 (557)
T PF01153_consen 89 QHLLSTRARKFDEFFRELLRQS--------------ENSLHSMFSRTYGSLYPQNRPIFQDLFTDLRRYYLGSNVNLEEA 154 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTHHHHCTHHHHHHHHHHHHHHHCCS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 4566778889999999987653 23445666777777776665322 23344456888888999999
Q ss_pred HHhhcCC
Q 005829 637 LSSLFQP 643 (675)
Q Consensus 637 L~~LF~g 643 (675)
++++|..
T Consensus 155 l~~Ff~~ 161 (557)
T PF01153_consen 155 LNEFFDR 161 (557)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 41
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.67 E-value=8.5e+02 Score=24.29 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005829 6 SIESLLAARKLLNSSLDKSRAVALALGKTG 35 (675)
Q Consensus 6 ~~~~~~a~~~~L~~~L~ks~~l~~~i~~~~ 35 (675)
.+++++.++..|.+.|+|--...++|.++|
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~ag 32 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGG 32 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999888777776554
No 42
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.54 E-value=3.1e+02 Score=25.73 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=5.0
Q ss_pred hHHHHHhhcccchh
Q 005829 37 RLEEIKERLPSSEA 50 (675)
Q Consensus 37 ~L~~~~~rl~~le~ 50 (675)
++..++..|-..+.
T Consensus 81 riq~LEeele~ae~ 94 (143)
T PF12718_consen 81 RIQLLEEELEEAEK 94 (143)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 43
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.35 E-value=6.9e+02 Score=27.44 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----H-----HHHHhhhcchHHHHHhhcccch
Q 005829 6 SIESLLAARKLLNSSLDKSRA----V-----ALALGKTGSRLEEIKERLPSSE 49 (675)
Q Consensus 6 ~~~~~~a~~~~L~~~L~ks~~----l-----~~~i~~~~~~L~~~~~rl~~le 49 (675)
.+..++..+..|...|+-+.. + ...|. ..|..+..+++.|+
T Consensus 210 ~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~---~~l~~L~~~lslL~ 259 (388)
T PF04912_consen 210 RAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLL---PALNELERQLSLLD 259 (388)
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccccCCcchHH---HHHHHHHHHHHhcC
Confidence 566677777777777776322 1 22233 45555556665554
No 44
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=20.33 E-value=84 Score=25.01 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=15.5
Q ss_pred ccCCCCcccccCHHHHHHHHHhhc
Q 005829 618 ENASGGKYVKYSANDLEKILSSLF 641 (675)
Q Consensus 618 ~~k~~~KyiKytpe~le~~L~~LF 641 (675)
+.+.+-.+++++|++||++|-+|-
T Consensus 18 ~~~~~P~W~~~~~~eVe~~I~kla 41 (60)
T PF08069_consen 18 YRRSPPSWLKYSPEEVEELIVKLA 41 (60)
T ss_dssp S-SS--TT--S-HHHHHHHHHHHC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHH
Confidence 455666799999999999999984
Done!