Query 005829
Match_columns 675
No_of_seqs 213 out of 514
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pft_A Exocytosis protein; hel 100.0 1.3E-98 4E-103 857.0 41.3 520 76-644 2-570 (571)
2 2b1e_A Exocyst complex compone 100.0 6.6E-96 2E-100 830.9 41.1 521 65-641 1-563 (564)
3 2d2s_A Exocyst complex compone 43.9 2.1E+02 0.0072 27.8 12.0 40 221-260 91-130 (235)
4 3ghg_A Fibrinogen alpha chain; 42.7 1E+02 0.0036 33.5 9.9 17 99-115 173-189 (562)
5 2x5h_A ORF 131; viral protein; 40.0 5.8 0.0002 32.0 -0.1 20 605-630 77-96 (97)
6 1zva_A E2 glycoprotein; membra 33.9 69 0.0024 25.3 5.1 58 13-73 15-73 (77)
7 3ci9_A Heat shock factor-bindi 31.3 43 0.0015 24.3 3.4 43 7-52 4-47 (48)
8 1deq_A Fibrinogen (alpha chain 26.7 3.7E+02 0.013 28.0 10.6 17 99-115 176-192 (390)
9 2efr_A General control protein 20.7 3.4E+02 0.012 24.6 8.1 14 65-78 103-116 (155)
10 2ibf_B Invasin IPAA, 70 kDa an 17.7 56 0.0019 19.7 1.4 21 21-44 5-25 (26)
No 1
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=100.00 E-value=1.3e-98 Score=857.03 Aligned_cols=520 Identities=19% Similarity=0.305 Sum_probs=445.3
Q ss_pred HHHHHHhhhhhhhHhHhhhcccccChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhhhhhHHH
Q 005829 76 AAAVLKVFDSVQELEKSLISESHSDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVTDRYNCSVKKSFR 155 (675)
Q Consensus 76 ~~~v~~~~~~~~~~e~~i~~gp~~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~ 155 (675)
+++|+++|+.+++.|.+|+.||..++.+||+||++|.+|++||..++ +++..+
T Consensus 2 ae~v~~~~d~~~~~e~~i~~gp~~~l~~yL~av~~l~~a~~~~~~~~-------------------~~s~~l-------- 54 (571)
T 2pft_A 2 SDHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNS-------------------PDSPEL-------- 54 (571)
T ss_dssp -CTTSTHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHS-------------------TTCHHH--------
T ss_pred HHHHHHHHccchhhhhhhhcCcHhhHHHHHHHHHHHHHHHHHHHhcC-------------------CChHHH--------
Confidence 57899999999999999999999999999999999999999999863 233322
Q ss_pred HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCC----CC--CccccCCCCCCHHHHHHHHHHHH
Q 005829 156 ILHELLAYEASARLNGGLLFEALNYLESEFNRLVTENTIPFALVASSSS----PG--KQAYIGSSLMPITVIQKLQVIID 229 (675)
Q Consensus 156 ~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~----~~--~~~~~~~~~l~~~~i~~L~~Ia~ 229 (675)
.++++|+++||.+||+||++||.+++.|++|..+++. .+ ......++.+|++++++|+.||+
T Consensus 55 ------------~~~~~Ll~~a~~~Le~eF~~lL~~~~~~~~p~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ia~ 122 (571)
T 2pft_A 55 ------------NKVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDELEVQEDVVLEHLPESVLRDVVRISR 122 (571)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCC--------SSCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHhcCcCCChHHHHhccccccccCccccccccCCCHHHHHHHHHHHH
Confidence 1257899999999999999999999999999865311 00 01122245899999999999999
Q ss_pred HHHHCCCchHHHHHHHHHhhHHHHHHHHhcchhhhhhh-----------------hc----cc--ccHHhhhHHHHHHHH
Q 005829 230 RLKANGRLEICISVYAEVRSLNIRKSLQKLDLEYLEKW-----------------AK----EF--DDVQDIEGLIGNWCK 286 (675)
Q Consensus 230 ~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~-----------------~~----~~--~~~~~le~~I~~w~~ 286 (675)
||+.+||.++|+++|+++|++++.++|..|+.+....+ .. .. .+|+.++.+|..|++
T Consensus 123 ~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~wi~ 202 (571)
T 2pft_A 123 WLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSSSSSGVPYSPAIPNKRKDTPTKKPIKRPGRDDMLDVETDAYIH 202 (571)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999965421110 00 00 157778999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhhccCCcchhhhHHHHHhhHHhHHHHHHhhHHHh-hcCCCh--HHH---HHHHHHHHHHHh
Q 005829 287 HLELVVKHVFEPECKLCSDVFNKIGLDICNCCFAKIAIQSGILSFLQFGKNVT-ESNKDP--VKL---LRLLEIFAALDK 360 (675)
Q Consensus 287 ~l~~~v~~l~~~E~~L~~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll~f~~~va-~~~r~~--~kl---f~lLdm~e~L~~ 360 (675)
++.++++ ||++||+||++||+. +.+..||.++| ++++..|++||++|+ ..+|+| +++ +.|+++|+.|.+
T Consensus 203 ~~~~~~~-l~~~Er~L~~~vf~~---~~~~~~F~~i~-~~~~~~ll~f~e~v~~~~kr~~~~~~~~~~l~l~~~l~~l~~ 277 (571)
T 2pft_A 203 CVSAFVK-LAQSEYRLLMEIIPE---HHQKKTFDSLI-QDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQ 277 (571)
T ss_dssp HHHHHHH-HHHHHHHHHHHHSCH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHcCc---ccHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHHHHHHH
Confidence 9986665 999999999999986 46889999999 678999999999997 477777 555 445555556999
Q ss_pred hhHHHHhhhCCCChhHHHHHHHHHHHHHHHhHHHHHHhhHHHhhccc-CC-CCCCCCccchhhHHHHHHHHHhhcCCcHH
Q 005829 361 VRVDFNRLFGGEAYGDIQSLIRDLIRRVVNGACEIFLELPLQVKLQR-QV-SPPPDGSVPRLVLFVTDYCNQLLGDNYRP 438 (675)
Q Consensus 361 l~p~~~~lf~~~~~~~i~~~~~~~l~~L~~~~~~~f~e~~~~i~~~~-~~-~~p~dG~Vh~lT~~vmnyl~~L~~~~y~~ 438 (675)
++|+++++|.|+++ .++.++.+++++|+++++++|.||...|+.++ +. ++|.||+|||+|+||||||+.|+ +|++
T Consensus 278 l~p~~~~~f~g~~~-~~~~~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~--~y~~ 354 (571)
T 2pft_A 278 TKPEFDQVLQGTAA-STKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLL--DFQE 354 (571)
T ss_dssp HHHHHHHHTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHH--HTHH
T ss_pred HHHHHHHHHccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHH--hhHH
Confidence 99999999999887 57899999999999999999999999999875 44 45669999999999999999999 8999
Q ss_pred HHHHHHhHhh-c----ccccchhcchHHHHHHHHHHHHHHhHHHhhccCCCccchhhhccccceeee-eccCCCcccccc
Q 005829 439 ILTQVLVIHQ-S----WKQAKYEEGLLTRLIYSVIKEIALNLDEWSNSHQDITLSYLFVMNNHCHFC-NLKGTKLGDMMG 512 (675)
Q Consensus 439 ~L~~il~~~~-~----w~~~~~~~~~l~~~i~~ii~~L~~nLe~Ksk~y~d~aL~~iFLmNN~~yI~-~v~~S~L~~lLg 512 (675)
+|..+|.... + |.+++.+.++|+.+|.+||++|+.|||.||+.|+|++|++||||||+|||+ ++++|+|..+||
T Consensus 355 ~l~~il~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~ksk~y~d~~l~~iFLmNN~~yI~~~v~~s~l~~llg 434 (571)
T 2pft_A 355 TAGAMLASQETSSSATSYSSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVA 434 (571)
T ss_dssp HHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTTTTSTHHHHHH
T ss_pred HHHHHHhccCCCcccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHhhHHHHHHHHhccchHHHhC
Confidence 9999997642 1 222334567899999999999999999999999999999999999999999 999999999999
Q ss_pred ---chHHHHHHHHHHHHHHhHHHhhHHHHHhhhhccCccC--CC-CCCcccHHHHHHHHHHHHHHHHHHHHhcccceecC
Q 005829 513 ---DSWVKAHEQYKNYYAGLYVRESWGKLFSFLRQDGLIA--SP-SRKASNRELVKKKLKDFYQTFDYMVKKHSCWVVTD 586 (675)
Q Consensus 513 ---~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~--~~-~~~~~~r~~iKekfk~FN~~Fee~~~~q~~w~VpD 586 (675)
++|+++++.++++|++.| +++|++|++||.+++.+. ++ +.++++|+.|||||++||.+|||+|++|+.|+|||
T Consensus 435 ~~~~~~~~~~~~~i~~~~~~Y-~~sW~~v~~~L~~~~~~~~~~g~~ls~~~r~~iKe~fk~Fn~~Fee~~~~q~~w~VpD 513 (571)
T 2pft_A 435 VTQKTAERSYREHIEQQIQTY-QRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPD 513 (571)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH-HGGGHHHHTTTSGGGSCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcCCCCCCcCcccHHHHHHHHHHHHHHHHHHHHhCCcccCcC
Confidence 689999999999999999 899999999999877553 22 24678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCcccccCHHHHHHHHHhhcCCC
Q 005829 587 KNSREKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSLFQPN 644 (675)
Q Consensus 587 ~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~~~~k~~~KyiKytpe~le~~L~~LF~g~ 644 (675)
|+||+.||.+|+++|+|+|++||+||++ ++|+|||+|||||||++||++|++||+|+
T Consensus 514 ~~LR~~Lr~~i~~~v~paY~~F~~r~~~-~~~~k~~~KyiKytpe~le~~L~~LFeg~ 570 (571)
T 2pft_A 514 TEQRDKIRQAQKDIVKETYGAFLHRYGS-VPFTKNPEKYIKYRVEQVGDMIDRLFDTS 570 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCCSCHHHHCCCCHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc-CcccCCCCCccccCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999997 78999999999999999999999999996
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=100.00 E-value=6.6e-96 Score=830.86 Aligned_cols=521 Identities=16% Similarity=0.219 Sum_probs=434.6
Q ss_pred HHHhHHHhhchHHHHHHhhhhhhhHhHhhhcccc-cChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccc
Q 005829 65 VRNQIDSAIGPAAAVLKVFDSVQELEKSLISESH-SDIFGYLVVLKQLEEAMKFLADNCRLAIQWLEGIAEALEGNVAVT 143 (675)
Q Consensus 65 ~~~nI~~tl~~~~~v~~~~~~~~~~e~~i~~gp~-~~l~~Yl~al~~L~~a~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (675)
.|+|||++++++++|+++++.++++|.+|+.||. ++|++||++|+||++|++||+++++ +
T Consensus 1 ~~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~-------------------~ 61 (564)
T 2b1e_A 1 GHMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQA-------------------N 61 (564)
T ss_dssp -------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC-----------------------
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCC-------------------C
Confidence 3789999999999999999999999999999998 9999999999999999999999743 2
Q ss_pred hhhhhhhhhHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCcccCCCCCCccccCCCCCCHHHHHH
Q 005829 144 DRYNCSVKKSFRILHELLAYEASARLNGGLLFEALNYLESEFNRLVTENTIPFALVASSSSPGKQAYIGSSLMPITVIQK 223 (675)
Q Consensus 144 ~~~~~~v~~~~~~l~~~~~~~~~~~~~~~Ll~~a~~~Le~eF~~lL~~~s~p~~p~~~~~~~~~~~~~~~~~l~~~~i~~ 223 (675)
+.+. +.+.+++. ++.+|+++|+.+||.||+.+|. ++.|+||..++. ++.|+|.+|++++.+
T Consensus 62 s~e~---~~f~g~l~----------~~~~L~~~g~~~L~~~F~~lL~-~s~p~~p~~~i~-----k~~p~p~l~~~~l~~ 122 (564)
T 2b1e_A 62 REEN---SEFHGILT----------HLEQLIKRSEAQLRVYFISILN-SIKPFDPQINIT-----KKMPFPYYEDQQLGA 122 (564)
T ss_dssp CCCS---HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHT-TSCCCCHHHHHH-----HTCCCCCCCHHHHHH
T ss_pred chhh---hhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHhhc-----cCCCCCCCCHHHHHH
Confidence 2222 23344453 3678999999999999999999 589999998752 447889999999999
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHhhHHHHHHHHhcchhhhhhhhcccccHHhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005829 224 LQVIIDRLKANGRLEICISVYAEVRSLNIRKSLQKLDLEYLEKWAKEFDDVQDIEGLIGNWCKHLELVVKHVFEPECKLC 303 (675)
Q Consensus 224 L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~~~~~~~~~~~~~~~~~le~~I~~w~~~l~~~v~~l~~~E~~L~ 303 (675)
|+.||+||..+|+.++|+++|+++|+++|.+||..|..........+..+|++++++|..|++++ ..|+++|+.||
T Consensus 123 L~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~----~~l~~~E~~L~ 198 (564)
T 2b1e_A 123 LSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL----LGFIANEKSLV 198 (564)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH----HHHHHHHHHHH
Confidence 99999999999999999999999999999999998864333333344568999999999999998 57999999999
Q ss_pred HhhhccCCcchhhhHHHHHhhHHhHHHHHHhhHHH-hhcCCCh-HHHHHHHHHHHHHHhhhHHHHhhhCCCChhHHHHHH
Q 005829 304 SDVFNKIGLDICNCCFAKIAIQSGILSFLQFGKNV-TESNKDP-VKLLRLLEIFAALDKVRVDFNRLFGGEAYGDIQSLI 381 (675)
Q Consensus 304 ~~Vf~~~~~~~~~~~F~~i~~~~~i~~ll~f~~~v-a~~~r~~-~klf~lLdm~e~L~~l~p~~~~lf~~~~~~~i~~~~ 381 (675)
++||+. .++.+..||..|+ ++++..+...++.. +.++++| +++|.+||||++|.++. .+|.|..+... .++
T Consensus 199 ~~vf~~-~~~~~~~~f~~i~-~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~~----~~~~~~~~~~~-~~~ 271 (564)
T 2b1e_A 199 DDLYSQ-YTESKPHVLSQIL-SPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDVK----KSLRGKELQNY-NLL 271 (564)
T ss_dssp HHHSCT-TCTTHHHHHHHHH-HHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHHH----HHTTTCCCTTH-HHH
T ss_pred HHHcCC-cchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHHH----HHHcccccchH-HHH
Confidence 999997 4567889999999 56776443333322 2357888 78999999999998766 77888776544 899
Q ss_pred HHHHHHHHHhHHHHHHhhHHHhhcccCC--CCCCCCccchhhHHHHHHHHHhhcCCcHHHHHHHHhH--hhcccc-----
Q 005829 382 RDLIRRVVNGACEIFLELPLQVKLQRQV--SPPPDGSVPRLVLFVTDYCNQLLGDNYRPILTQVLVI--HQSWKQ----- 452 (675)
Q Consensus 382 ~~~l~~L~~~~~~~f~e~~~~i~~~~~~--~~p~dG~Vh~lT~~vmnyl~~L~~~~y~~~L~~il~~--~~~w~~----- 452 (675)
.+++++|+++++++|+||...|+.+.++ +.|+||||||+|+||||||+.|+ +|+.+|..++.. .++|.+
T Consensus 272 ~~~l~~L~~~~~~~~~ef~~~i~~~~~~~~~~p~dG~Vh~lT~~vmnyl~~l~--~y~~~l~~~l~~~~~~~~~~~~~~~ 349 (564)
T 2b1e_A 272 QDCTQEVRQVTQSLFRDAIDRIIKKANSISTIPSNNGVTEATVDTMSRLRKFS--EYKNGCLGAMDNITRENWLPSNYKE 349 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCTTCCCCHHHHHHHHHHHHHG--GGHHHHHHHTTTCCGGGTSCTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccHHHHHHHHHHHHHH--hhHHHHHHHHHhccccCCCcccccc
Confidence 9999999999999999999999876543 34799999999999999999999 999999999976 345654
Q ss_pred -----------cchhcchHHHHHHHHHHHHHHhHHHh------------------hccCCCccchhhhccccceeee-ec
Q 005829 453 -----------AKYEEGLLTRLIYSVIKEIALNLDEW------------------SNSHQDITLSYLFVMNNHCHFC-NL 502 (675)
Q Consensus 453 -----------~~~~~~~l~~~i~~ii~~L~~nLe~K------------------sk~y~d~aL~~iFLmNN~~yI~-~v 502 (675)
++++.++|++||.++|++|+.|||.| |+.|+|++++ +|||||.|||+ +|
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~i~~~i~~L~~~Le~ka~~~~~~~~~~~l~~~~ss~~~~d~~l~-~FllNN~~yI~~~v 428 (564)
T 2b1e_A 350 KEYTLQNEALNWEDHNVLLSCFISDCIDTLAVNLERKAQIALMPNQEPDVANPNSSKNKHKQRIG-FFILMNLTLVEQIV 428 (564)
T ss_dssp GGSCCCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCSCTTCSSCTTHHHHH-HHHHHHHHHHHHHH
T ss_pred cccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhcCHHHHH-HHHHHhHHHHHHHH
Confidence 12344689999999999999999999 5779999996 59999999999 99
Q ss_pred cCCCccccccchHHHHHHHHHHHHHHhHHHhhHHHHHhhhhccCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc
Q 005829 503 KGTKLGDMMGDSWVKAHEQYKNYYAGLYVRESWGKLFSFLRQDGLIASPSRKASNRELVKKKLKDFYQTFDYMVKKHSCW 582 (675)
Q Consensus 503 ~~S~L~~lLg~~~~~~~~~~~~~~~~~Y~~~sW~~vl~~L~~~~~~~~~~~~~~~r~~iKekfk~FN~~Fee~~~~q~~w 582 (675)
++|+|..+||++|.++|++++++|+ .|++++|++|++||.+++.+.+++.++++|+.|||||++||++|||+|++|++|
T Consensus 429 ~~SeL~~lLg~~~~~~~~~~~~~~~-~y~~~sW~~v~~~L~~~~~~~~~~ks~~~k~~iKe~fk~FN~~Fee~~~~q~~w 507 (564)
T 2b1e_A 429 EKSELNLMLAGEGHSRLERLKKRYI-SYMVSDWRDLTANLMDSVFIDSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQY 507 (564)
T ss_dssp HTSTHHHHTTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhHhcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999995 899999999999999876543333367899999999999999999999999999
Q ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCcccccCHHHHHHHHHhhc
Q 005829 583 VVTDKNSREKICQLVVQAFLPVYRSYLQNYGVLVEENASGGKYVKYSANDLEKILSSLF 641 (675)
Q Consensus 583 ~VpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~~~~k~~~KyiKytpe~le~~L~~LF 641 (675)
+||||+||+.||.+|+++|+|+|++||+||+. |+|||+|||||||++||++|++|+
T Consensus 508 ~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~---~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 508 KLSDPSLKVTLKSEIISLVMPMYERFYSRYKD---SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG---GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccCCCCCcccCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999985 699999999999999999999996
No 3
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.92 E-value=2.1e+02 Score=27.77 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHhhHHHHHHHHhcc
Q 005829 221 IQKLQVIIDRLKANGRLEICISVYAEVRSLNIRKSLQKLD 260 (675)
Q Consensus 221 i~~L~~Ia~~m~~~g~~~e~~~~Y~~~R~~~l~~sL~~L~ 260 (675)
...++....+|...|..+.....|=+.|+..+...+..++
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~ 130 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIG 130 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999999999999999999998884
No 4
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.71 E-value=1e+02 Score=33.47 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=13.2
Q ss_pred cChHHHHHHHHHHHHHH
Q 005829 99 SDIFGYLVVLKQLEEAM 115 (675)
Q Consensus 99 ~~l~~Yl~al~~L~~a~ 115 (675)
.|++.|-+-=+||+.++
T Consensus 173 vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh
Confidence 79999977777777555
No 5
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=40.02 E-value=5.8 Score=31.99 Aligned_cols=20 Identities=25% Similarity=0.708 Sum_probs=11.0
Q ss_pred HHHHHHhccccccccCCCCcccccCH
Q 005829 605 YRSYLQNYGVLVEENASGGKYVKYSA 630 (675)
Q Consensus 605 Y~~F~~ry~~~~~~~k~~~KyiKytp 630 (675)
-..|+++|.+.+ +||+|+||
T Consensus 77 Ia~FLeKYS~~L------nkYVkF~~ 96 (97)
T 2x5h_A 77 IAEFLEKYSDFL------NEYVKFTP 96 (97)
T ss_dssp HHHHHHHTHHHH------HHHC----
T ss_pred HHHHHHHHHHHH------HHhhcccc
Confidence 356888887644 46888887
No 6
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=33.94 E-value=69 Score=25.34 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhcchHHHHHhhcccchhhhhccchhhhhHHHHHHhHHHhh
Q 005829 13 ARKLLNSSLDKS-RAVALALGKTGSRLEEIKERLPSSEAAFRCFSMQKCSFVVVRNQIDSAI 73 (675)
Q Consensus 13 ~~~~L~~~L~ks-~~l~~~i~~~~~~L~~~~~rl~~le~~i~Pi~~~t~~L~~~~~nI~~tl 73 (675)
.+..|...|.+. ..++.+|. .+..+++.||+.|...+.-.|.+..+.+.+..+|+..+
T Consensus 15 aL~~L~~qL~~NFgAISSsi~---dIy~rLdGRlaaLnafv~~~~~ev~~~r~lA~~iNEcV 73 (77)
T 1zva_A 15 ALNTLVKQLSSNFGAISSVLN---DISGGRGGDISGINASVVNIQKEIDRLNEVAKNLNESL 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHTTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH---HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444332 34555566 55666668888888887777777666666666666543
No 7
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=31.35 E-value=43 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhhcchHHHHHhhcccchhhh
Q 005829 7 IESLLAARKLLNSS-LDKSRAVALALGKTGSRLEEIKERLPSSEAAF 52 (675)
Q Consensus 7 ~~~~~a~~~~L~~~-L~ks~~l~~~i~~~~~~L~~~~~rl~~le~~i 52 (675)
.+.+.+.++-|-+. =.|=..++.+|. ++++.+..|+-.||++|
T Consensus 4 ~~dLt~~vq~LL~qmq~kFq~mS~~I~---~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 4 VQDLTSVVQTLLQQMQDKFQTISDQII---GRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHhhc
Confidence 44556666644444 457788888888 88899999999999876
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.66 E-value=3.7e+02 Score=28.00 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=13.1
Q ss_pred cChHHHHHHHHHHHHHH
Q 005829 99 SDIFGYLVVLKQLEEAM 115 (675)
Q Consensus 99 ~~l~~Yl~al~~L~~a~ 115 (675)
.|++.|-+-.++|..+.
T Consensus 176 vD~e~ye~qqKQL~qv~ 192 (390)
T 1deq_A 176 VDLEDYKNQQKQLEQVI 192 (390)
T ss_pred ccHHHHHHHHHHHHhhh
Confidence 58899988888877654
No 9
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.71 E-value=3.4e+02 Score=24.64 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=5.3
Q ss_pred HHHhHHHhhchHHH
Q 005829 65 VRNQIDSAIGPAAA 78 (675)
Q Consensus 65 ~~~nI~~tl~~~~~ 78 (675)
++..|++.=..+..
T Consensus 103 LEk~id~lEd~L~~ 116 (155)
T 2efr_A 103 LEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 10
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=17.75 E-value=56 Score=19.69 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhcchHHHHHhh
Q 005829 21 LDKSRAVALALGKTGSRLEEIKER 44 (675)
Q Consensus 21 L~ks~~l~~~i~~~~~~L~~~~~r 44 (675)
.+|.++++..++ +.|++|++.
T Consensus 5 yekakevssals---kvlskiddt 25 (26)
T 2ibf_B 5 YEKAKEVSSALS---KVLSKIDDT 25 (26)
T ss_dssp HHHHHHHHHHHH---HHHHTSCCC
T ss_pred HHHHHHHHHHHH---HHHHhhccC
Confidence 478888888888 888877753
Done!