BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005830
(675 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/655 (80%), Positives = 563/655 (85%)
Query: 8 SLEEIKNESVDLERIPIEEVFEQLKCSREGLTSDEGAHRLHVFGPNXXXXXXXXXXXXXX 67
SLE+IKNE+VDLE+IPIEEVF+QLKCSREGLT+ EG R+ +FGPN
Sbjct: 3 SLEDIKNETVDLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKKESKLLKFL 62
Query: 68 GFMWNPLSWVMEXXXXXXXXXXNGGGRDPDWQDFVGIIVLLVINSTISFIEEXXXXXXXX 127
GFMWNPLSWVME NG GR PDWQDFVGII LLVINSTISFIEE
Sbjct: 63 GFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAA 122
Query: 128 XXXXXXXPKTKVLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALT 187
PKTKVLRDG+WSEQ+A+ILVPGD++SIKLGDI+PADARLLEGDPLK+DQSALT
Sbjct: 123 ALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 188 GESLPVTKNPYDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 247
GESLPVTK+P EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA
Sbjct: 183 GESLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTA 242
Query: 248 IGNFCICSIAVGIVAEIIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 307
IGNFCICSIA+G+V EII+MYP+Q RKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH
Sbjct: 243 IGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSH 302
Query: 308 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLA 367
RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL+VD+NL+EVF KGVEK+ V+L A
Sbjct: 303 RLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFA 362
Query: 368 ARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWHRAS 427
A ASR ENQDAIDAA+VGMLADPKEARAG+REVHFLPFNPVDKRTALTYID GNWHR S
Sbjct: 363 AMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVS 422
Query: 428 KGAPEQILALCNCREDVRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQLVGL 487
KGAPEQIL L D+ KKV ++IDK+AERGLRSL VARQ +PEKTKESPGAPW+ VGL
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGL 482
Query: 488 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDK 547
LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSS+LLG K
Sbjct: 483 LPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHK 542
Query: 548 DASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXXXX 607
DA++A++PV+ELIEKADGFAGVFPEHKYEIVK+LQERKHI GMTGDGVNDAPALKK
Sbjct: 543 DANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIG 602
Query: 608 XXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 662
VLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV
Sbjct: 603 IAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV 657
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 233/644 (36%), Positives = 353/644 (54%), Gaps = 41/644 (6%)
Query: 34 SREGLTSDEGAHRLHVFGPNXXXXXXXXXXXXXXGFMWNPLSWVMEXXXXXXXXXXNGGG 93
+R GLTS+E R +G N GF P+ +VME
Sbjct: 84 TRVGLTSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLE---- 139
Query: 94 RDPDWQDFVGIIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASIL 153
DW DF I LL++N+ + F++E K VLRDG E +A +
Sbjct: 140 ---DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV 196
Query: 154 VPGDVISIKLGDIVPADARLLEGDP-LKIDQSALTGESLPVTKNPYDEVFSGSTCKQGEI 212
VPGD++ ++ G I+PAD R++ D L++DQSALTGESL V K+ D+VF+ S K+GE
Sbjct: 197 VPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEA 256
Query: 213 EAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAVGIVAEIIIMYPVQ 271
V+ ATG +TF G+AA LV++ + GHF +VL IG + + ++ ++I++
Sbjct: 257 FVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILL----ILVIFTLLIVWVSS 312
Query: 272 HRKYRDG-----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 326
YR ++ L + I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +A
Sbjct: 313 F--YRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLA 370
Query: 327 GMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAARASRTENQ--DAIDAAIV 384
G+++LCSDKTGTLT NKL++ GV+ E ++L A A+ + + DAID A +
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFL 427
Query: 385 GMLADPKEARAGVRE---VHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQILALCN-- 439
L A++ + + + F PF+PV K+ G KGAP +L
Sbjct: 428 KSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED 487
Query: 440 --CREDVRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQLVGLLPLFDPPRHD 497
E+V + + +FA RG RSLGVAR K G+ W+++G++P DPPRHD
Sbjct: 488 HPIPEEVDQAYKNKVAEFATRGFRSLGVAR-------KRGEGS-WEILGIMPCMDPPRHD 539
Query: 498 SAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVD 557
+ +T+ A LG+++KM+TGD + I +ET R+LG+GTN+Y ++ LG + V
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY-NAERLGLGGGGDMPGSEVY 598
Query: 558 ELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXX 617
+ +E ADGFA VFP+HKY +V+ LQ+R ++ MTGDGVNDAP+LKK
Sbjct: 599 DFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAA 658
Query: 618 XXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRI 661
V PGL II A+ TSR IF RM Y +Y ++++I +
Sbjct: 659 RSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHL 702
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 165/682 (24%), Positives = 263/682 (38%), Gaps = 133/682 (19%)
Query: 102 VGIIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDVISI 161
+ +I ++V+ + +E + V+RDG + +A LV GD++ +
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Query: 162 KLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCKQGE 211
K GD VPAD R+L+ K+D S+LTGES P T++P + F + C +G
Sbjct: 204 KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGT 263
Query: 212 IEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGIVAE 263
+ +V+ TG T G+ A L ++ HF + I +A+ A
Sbjct: 264 AQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDI--------IAGLAILFGAT 315
Query: 264 IIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIE 323
I+ + + + +++ +P + ++V +++ + RL+ + + K + A+E
Sbjct: 316 FFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVE 375
Query: 324 EMAGMDVLCSDKTGTLTLNKLTVDR----NLI-----------EVFAKGVEKE----HVI 364
+ V+CSDKTGTLT N++TV N I + F + E V+
Sbjct: 376 TLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVL 435
Query: 365 LLAARASRTENQDAIDAAIVGMLADPKEA------------RAGVRE----VHFLPFNPV 408
L RA+ QDA+ ++ D E G RE V +PFN
Sbjct: 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNST 495
Query: 409 DKRTALTYIDSDGNWHR---ASKGAPEQILALCNC----------REDVRKKVHAVIDKF 455
+K + D R KGAPE++L C+ E R+
Sbjct: 496 NKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSL 555
Query: 456 AERGLRSLGVARQEIPEK-----------TKESPGAPWQLVGLLPLFDPPRHDSAETIRR 504
G R LG + + EK P + GL+ + DPPR + + +
Sbjct: 556 GGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 505 ALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAA---LPVD---- 557
G+ V M+TGD K +G+ + G + IAA +PVD
Sbjct: 616 CRTAGIRVIMVTGDHPITAKAIAASVGIISE--------GSETVEDIAARLRVPVDQVNR 667
Query: 558 -------------------ELIEKADG-----FAGVFPEHKYEIVKRLQERKHICGMTGD 593
EL+E FA P+ K IV+ Q I +TGD
Sbjct: 668 KDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGD 727
Query: 594 GVNDAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTI 652
GVND+PALKK +L + + I++ V R IF +K
Sbjct: 728 GVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIA 787
Query: 653 YAVS--------ITIRIVVSVP 666
Y ++ I I VSVP
Sbjct: 788 YTLTKNIPELTPYLIYITVSVP 809
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 157/660 (23%), Positives = 273/660 (41%), Gaps = 107/660 (16%)
Query: 101 FVGIIV--LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDV 158
++G+++ ++++ S+ +E + V+RDG S +A +V GD+
Sbjct: 136 YLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDL 195
Query: 159 ISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCK 208
+ +K GD +PAD R++ K+D S+LTGES P T++P + F + C
Sbjct: 196 VEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCV 255
Query: 209 QGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQ-KVLTAIGNFCICSIAVGIVAEIIIM 267
+G VV+ TG T G+ A L S +VG + I +AV + I+
Sbjct: 256 EGTARGVVVYTGDRTVMGRIATLA-SGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFIL 314
Query: 268 YPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAG 327
+ + + + L+ +++ +P + ++V + + + R++++ + K + A+E +
Sbjct: 315 SLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 374
Query: 328 MDVLCSDKTGTLTLNKLTV-----DRNLIEVFAKGVEKE----------------HVILL 366
+CSDKTGTLT N++TV D + E A E + + L
Sbjct: 375 TSTICSDKTGTLTQNRMTVAHMWFDNQIHE--ADTTENQSGAAFDKTSATWSALSRIAAL 432
Query: 367 AARASRTENQDAIDAAIVGMLADPKEAR------------AGVRE----VHFLPFNPVDK 410
RA QD + + D E+ G+R+ + +PFN +K
Sbjct: 433 CNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNK 492
Query: 411 RTALTYID---SDGNWHRASKGAPEQILALCNC----------REDVRKKVHAVIDKFAE 457
+ + S+ + KGAPE+IL C+ +ED+++ +
Sbjct: 493 YQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGG 552
Query: 458 RGLRSLGVARQEIPEKTKESPGAPWQ------------LVGLLPLFDPPRHDSAETIRRA 505
G R LG +PE K + G P+ VGL+ + DPPR + + +
Sbjct: 553 LGERVLGFCHFALPED-KYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKC 611
Query: 506 LNLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNM---------YPSSSLL 543
+ G+ V M+TGD ++ G ET + N+ + +
Sbjct: 612 RSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVH 671
Query: 544 GQD-KDASIAALPVDELIEKADG--FAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPA 600
G D KD S L D+++ FA P+ K IV+ Q + I +TGDGVND+PA
Sbjct: 672 GSDLKDLSTEVL--DDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPA 729
Query: 601 LKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 659
LKK +L + + I++ V R IF +K Y ++ I
Sbjct: 730 LKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 789
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 149/663 (22%), Positives = 273/663 (41%), Gaps = 113/663 (17%)
Query: 101 FVGIIV--LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDV 158
++G+++ +++I S+ +E + V+R+G +A +V GD+
Sbjct: 106 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 165
Query: 159 ISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCK 208
+ +K GD +PAD R++ + K+D S+LTGES P T++P + F + C
Sbjct: 166 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 225
Query: 209 QGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGI 260
+G +V+ TG T G+ A L ++ HF ++T +AV +
Sbjct: 226 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITG--------VAVFL 277
Query: 261 VAEIIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 320
I+ + + + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 278 GVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 337
Query: 321 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DRNLIE--------------VFAKGVEKE 361
A+E + +CSDKTGTLT N++TV D + E A +
Sbjct: 338 AVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 397
Query: 362 HVILLAARASRTENQ------------DAIDAAIVGML----ADPKEARAGVREVHFLPF 405
+ L RA NQ DA ++A++ + KE R ++ +PF
Sbjct: 398 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 457
Query: 406 NPVDKRTALTYIDSDGNWHR---ASKGAPEQILALCNC-------------REDVRKKVH 449
N +K + + + R KGAPE+IL C+ +D + +
Sbjct: 458 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 517
Query: 450 AVIDKFAER--GLRSLGVARQEIPEKTK------ESPGAPWQLVGLLPLFDPPRHDSAET 501
+ ER G L + ++ PE + P VGL+ + DPPR +
Sbjct: 518 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 577
Query: 502 IRRALNLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSSLLGQDKD 548
+ + + G+ V M+TGD ++ G ET + N+ P S + +D
Sbjct: 578 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNI-PVSQVNPRDAK 636
Query: 549 ASI---------AALPVDELIEKADG--FAGVFPEHKYEIVKRLQERKHICGMTGDGVND 597
A + + +D++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 637 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 696
Query: 598 APALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 656
+PA KK +L + + I++ V R IF +K Y ++
Sbjct: 697 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 756
Query: 657 ITI 659
I
Sbjct: 757 SNI 759
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 148/663 (22%), Positives = 272/663 (41%), Gaps = 113/663 (17%)
Query: 101 FVGIIV--LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDV 158
++G+++ +++I S+ +E + V+R+G +A +V GD+
Sbjct: 100 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 159
Query: 159 ISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCK 208
+ +K GD +PAD R++ + K+D S+LTGES P T++P + F + C
Sbjct: 160 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 219
Query: 209 QGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGI 260
+G +V+ TG T G+ A L ++ HF ++T +AV +
Sbjct: 220 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITG--------VAVFL 271
Query: 261 VAEIIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 320
I+ + + + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 272 GVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 331
Query: 321 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DRNLIE--------------VFAKGVEKE 361
A+E + +CS KTGTLT N++TV D + E A +
Sbjct: 332 AVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 391
Query: 362 HVILLAARASRTENQ------------DAIDAAIVGML----ADPKEARAGVREVHFLPF 405
+ L RA NQ DA ++A++ + KE R ++ +PF
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 451
Query: 406 NPVDKRTALTYIDSDGNWHR---ASKGAPEQILALCNC-------------REDVRKKVH 449
N +K + + + R KGAPE+IL C+ +D + +
Sbjct: 452 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 511
Query: 450 AVIDKFAER--GLRSLGVARQEIPEKTK------ESPGAPWQLVGLLPLFDPPRHDSAET 501
+ ER G L + ++ PE + P VGL+ + DPPR +
Sbjct: 512 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 571
Query: 502 IRRALNLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSSLLGQDKD 548
+ + + G+ V M+TGD ++ G ET + N+ P S + +D
Sbjct: 572 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNI-PVSQVNPRDAK 630
Query: 549 ASI---------AALPVDELIEKADG--FAGVFPEHKYEIVKRLQERKHICGMTGDGVND 597
A + + +D++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 631 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 690
Query: 598 APALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 656
+PA KK +L + + I++ V R IF +K Y ++
Sbjct: 691 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 750
Query: 657 ITI 659
I
Sbjct: 751 SNI 753
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 121/271 (44%), Gaps = 43/271 (15%)
Query: 428 KGAPEQILALCNCRE----------DVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 475
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 476 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 525
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 526 TGRRLGMGTNMYPSSSLLGQDKDASIAA--------LPVDELIE---KADGFAGVFPEHK 574
RR+G + G+++D + A LP+ E E +A FA V P HK
Sbjct: 634 ICRRIG----------IFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHK 683
Query: 575 YEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVII 634
+IV+ LQ I MTGDGVNDAPALKK VL + S I+
Sbjct: 684 SKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 743
Query: 635 SAVLTSRAIFQRMKNYTIYAVSITIRIVVSV 665
+AV RAI+ MK + Y +S + VV +
Sbjct: 744 AAVEEGRAIYNNMKQFIRYLISSNVGEVVCI 774
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 104 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 161
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 162 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 206
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 207 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 258
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 259 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 314
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 315 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 351
I + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 332 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 121/265 (45%), Gaps = 31/265 (11%)
Query: 428 KGAPEQILALCNCRE----------DVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 475
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 476 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 525
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 526 TGRRLGM-GTNM-YPSSSLLGQDKDASIAALPVDELIE---KADGFAGVFPEHKYEIVKR 580
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 691
Query: 581 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 640
LQ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 692 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 641 RAIFQRMKNYTIYAVSITIRIVVSV 665
RAI+ MK + Y +S + VV +
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCI 776
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 104 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 161
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 95 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 154
Query: 162 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 206
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 155 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 214
Query: 207 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 258
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 215 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 272
Query: 259 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 314
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 273 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 332
Query: 315 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 351
I + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 333 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 121/265 (45%), Gaps = 31/265 (11%)
Query: 428 KGAPEQILALCNCRE----------DVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 475
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 476 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 525
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 526 TGRRLGM-GTNM-YPSSSLLGQDKDASIAALPVDELIE---KADGFAGVFPEHKYEIVKR 580
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 581 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 640
LQ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 641 RAIFQRMKNYTIYAVSITIRIVVSV 665
RAI+ MK + Y +S + VV +
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCI 775
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 104 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 161
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 162 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 206
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 207 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 258
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 259 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 314
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 315 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 351
I + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 332 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 121/265 (45%), Gaps = 31/265 (11%)
Query: 428 KGAPEQILALCNCRE----------DVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 475
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 476 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 525
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 526 TGRRLGM-GTNM-YPSSSLLGQDKDASIAALPVDELIE---KADGFAGVFPEHKYEIVKR 580
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 581 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 640
LQ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 641 RAIFQRMKNYTIYAVSITIRIVVSV 665
RAI+ MK + Y +S + VV +
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCI 775
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 31/277 (11%)
Query: 104 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 161
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 162 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 206
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 207 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 258
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 259 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 314
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 315 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 351
I + + ++E + V+CS KTGTLT N+++V + I
Sbjct: 332 IVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 125/546 (22%), Positives = 218/546 (39%), Gaps = 95/546 (17%)
Query: 139 VLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPY 198
V+RDG+ + GD++ ++ G+ +P D ++EG+ +D+S ++GE +PV K+
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 199 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIA 257
DEVF + G ++ G T + LV D+ Q++ + + I ++
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 258 VGIVAEIIIMYPVQHRKYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 313
+ ++ I Y + H L+ +L+ P +A PT L+V M G+ + G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 311
Query: 314 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAARASRT 373
+ K A+E + + DKTGTLT K V +L+ + G E+E + L A R+
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT-DLVPL--NGDERELLRLAAIAERRS 368
Query: 374 ENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQ 433
E+ I AIV + AL + G + A E
Sbjct: 369 EHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 400
Query: 434 ILA----LCNCR--ED----VRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQ 483
++A + N R ED V +V ++K ++ VAR +
Sbjct: 401 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN-------------GR 447
Query: 484 LVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLL 543
+ G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 448 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 496
Query: 544 GQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKK 603
D +I A V P K E VK+LQ K + GDG+NDAPAL +
Sbjct: 497 -------------DLVI------AEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 536
Query: 604 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVV 663
VL L +++A+ SR ++K +A+ + ++
Sbjct: 537 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIP 596
Query: 664 SVPNIL 669
+ +L
Sbjct: 597 AAAGLL 602
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 125/546 (22%), Positives = 218/546 (39%), Gaps = 95/546 (17%)
Query: 139 VLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPY 198
V+RDG+ + GD++ ++ G+ +P D ++EG+ +D+S ++GE +PV K+
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 199 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIA 257
DEVF + G ++ G T + LV D+ Q++ + + I ++
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 258 VGIVAEIIIMYPVQHRKYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 313
+ ++ I Y + H L+ +L+ P +A PT L+V M G+ + G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 389
Query: 314 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAARASRT 373
+ K A+E + + DKTGTLT K V +L+ + G E+E + L A R+
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT-DLVPL--NGDERELLRLAAIAERRS 446
Query: 374 ENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQ 433
E+ I AIV + AL + G + A E
Sbjct: 447 EHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 478
Query: 434 ILA----LCNCR--ED----VRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQ 483
++A + N R ED V +V ++K ++ VAR +
Sbjct: 479 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN-------------GR 525
Query: 484 LVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLL 543
+ G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 526 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 574
Query: 544 GQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKK 603
D +I A V P K E VK+LQ K + GDG+NDAPAL +
Sbjct: 575 -------------DLVI------AEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 614
Query: 604 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVV 663
VL L +++A+ SR ++K +A+ + ++
Sbjct: 615 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIP 674
Query: 664 SVPNIL 669
+ +L
Sbjct: 675 AAAGLL 680
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 7/207 (3%)
Query: 138 KVLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP 197
++ DG E + GD++ ++ G+ +P D + EG +D+S +TGE +PV K
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEA 287
Query: 198 YDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVL-TAIGNFCICS 255
+V + + G + G T + +V D+ Q++ T G F
Sbjct: 288 SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAV 347
Query: 256 IAVGIVAEII--IMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQG 313
I V +++ I+ ++ P Y G+ + +LI P A+ +++ +G + +Q G
Sbjct: 348 ILVAVLSFIVWALLGPQPALSY--GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSG 405
Query: 314 AITKRMTAIEEMAGMDVLCSDKTGTLT 340
+ K A+E M ++ L DKTGTLT
Sbjct: 406 VLIKNAEALERMEKVNTLVVDKTGTLT 432
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 30/119 (25%)
Query: 485 VGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLG 544
V LL + DP + + ETI G+ + M+TGD + LG
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------- 592
Query: 545 QDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKK 603
I+K A + PE K IV L+++ I M GDGVNDAPAL K
Sbjct: 593 ---------------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 37/150 (24%)
Query: 460 LRSLGVARQEIPEKTKESPGA------PWQLVGLLPLFDPPRHDSAETIRRALNLGVNVK 513
+R LG+ E EK K+ ++ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCM 164
Query: 514 MITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEH 573
M+TGD + K LG+ D FA V P
Sbjct: 165 MLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPHE 194
Query: 574 KYEIVKRLQERKHICGMTGDGVNDAPALKK 603
K E VK +Q+ K++ M GDGVNDAPAL +
Sbjct: 195 KAEKVKEVQQ-KYVTAMVGDGVNDAPALAQ 223
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 37/150 (24%)
Query: 460 LRSLGVARQEIPEKTKESPGA------PWQLVGLLPLFDPPRHDSAETIRRALNLGVNVK 513
+R LG+ E EK K+ ++ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCM 164
Query: 514 MITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEH 573
M+TGD + K LG+ D FA V P
Sbjct: 165 MLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPHE 194
Query: 574 KYEIVKRLQERKHICGMTGDGVNDAPALKK 603
K E VK +Q+ K++ M GDGVNDAPAL +
Sbjct: 195 KAEKVKEVQQ-KYVTAMVGDGVNDAPALAQ 223
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 149 DASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPYDEVFSGSTCK 208
D ++ GD+I + G P D R++EG + +D+S +TGE++PV K P V +GS +
Sbjct: 38 DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 209 QGEIEAVVIATGVHTFFGKAAHLVD 233
G + G T + LV+
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 139 VLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPY 198
V+RDG+ + GD++ ++ G+ +P D ++EG+ +D+S ++GE +PV K+
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 199 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 233
DEVF + G ++ G T + LV+
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 130/350 (37%), Gaps = 77/350 (22%)
Query: 305 GSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVI 364
GS + ++ G + K A+E + + DKTGTLT K V +L+ + G E+E ++
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPL--NGDERE-LL 64
Query: 365 LLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWH 424
LAA A R Q +A + L H + +K +
Sbjct: 65 RLAAIAERRSEQPIAEAIVKKALE------------HGIELGEPEKVEVI---------- 102
Query: 425 RASKGAPEQILALCNCR--ED----VRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESP 478
A +G + + N R ED V +V ++K ++ VAR
Sbjct: 103 -AGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN---------- 151
Query: 479 GAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYP 538
++ G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 152 ---GRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------ 202
Query: 539 SSSLLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDA 598
+L+ A V P K E VK+LQ K + GDG+NDA
Sbjct: 203 -------------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDA 237
Query: 599 PALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 648
PAL + VL L +++A+ SR ++K
Sbjct: 238 PALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 31/163 (19%)
Query: 486 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQ 545
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 546 DKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXX 605
+L+ A V P K E VK+LQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQAD 244
Query: 606 XXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 648
VL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 566 FAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPAL 601
A V P K E VK+LQ K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPAL 99
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 566 FAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVL 625
A V P K E VK+LQ K + GDG+NDAPAL + VL
Sbjct: 186 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 626 TEPGLSVIISAVLTSR 641
L +++A+ SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|3TG9|A Chain A, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
pdb|3TG9|B Chain B, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
Length = 356
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 394 RAGVREVHFLPFNPVDKRTALTYID-SDGNW 423
RAG+ E + F+ + +TAL YID DG+W
Sbjct: 183 RAGMHESGYFAFDTLPAKTALGYIDLEDGSW 213
>pdb|4AD1|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens
pdb|4AD2|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD3|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD4|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Isofagomine And Alpha-1,2-Mannobiose
pdb|4AD5|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin And Alpha-1,2-Mannobiose
Length = 380
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 365 LLAARASRTENQDAIDAAIVGML-ADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNW 423
LL+ S T A DA ++G+ + P R + HF F T TY + NW
Sbjct: 208 LLSPGGSITIRNTAYDALMIGLWTSSPTVQRPFILNAHFDGFYTYFAATGFTYGSTPTNW 267
Query: 424 HRASKGAPEQ 433
K A E
Sbjct: 268 VSMQKWAKEN 277
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 542 LLGQDKDASIAALPVDELIEKA-----DGFAG-VF-PEHKYEIVKRLQERKHICGMTGDG 594
L+ +D ++ +LP+ +++++ +GF G VF PE+ ++V ++ ++ G+ G+G
Sbjct: 17 LVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNG 76
Query: 595 VND 597
V+D
Sbjct: 77 VSD 79
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 403 LPFNPVDKRTALTYIDSDGNWHRASKGAPEQILALCN-CRED---------VRKKVHAVI 452
+PF+ +R ++ ++ + KGA ++IL +C+ R + + +K+ V
Sbjct: 62 IPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVT 121
Query: 453 DKFAERGLRSLGVARQEIPEK 473
D +GLR + VA + +P +
Sbjct: 122 DTLNRQGLRVVAVATKYLPAR 142
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 542 LLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVN 596
+L DK+ + L + I++ ++ + PE K I+++L++ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 542 LLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVN 596
+L DK+ + L + I++ ++ + PE K I+++L++ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 542 LLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVN 596
+L DK+ + L + I++ ++ + PE K I+++L++ + M GDGVN
Sbjct: 157 ILSGDKEDKVKELSKELNIQEY--YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,229,929
Number of Sequences: 62578
Number of extensions: 713663
Number of successful extensions: 1584
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 67
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)