Query 005831
Match_columns 675
No_of_seqs 317 out of 802
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 14:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 2E-160 5E-165 1341.3 58.3 617 8-675 2-655 (719)
2 PF07059 DUF1336: Protein of u 100.0 8.3E-54 1.8E-58 434.8 14.2 157 518-675 1-177 (227)
3 cd08904 START_STARD6-like Lipi 100.0 1.1E-33 2.3E-38 283.9 22.9 183 172-364 20-203 (204)
4 cd08868 START_STARD1_3_like Ch 100.0 5.4E-33 1.2E-37 279.3 24.4 185 170-366 20-207 (208)
5 cd08906 START_STARD3-like Chol 100.0 6E-32 1.3E-36 272.6 21.8 185 170-366 21-208 (209)
6 cd08869 START_RhoGAP C-termina 100.0 1.4E-31 3E-36 267.5 22.7 176 173-366 18-196 (197)
7 cd08903 START_STARD5-like Lipi 100.0 2.4E-31 5.1E-36 268.0 23.1 184 172-365 20-206 (208)
8 cd08867 START_STARD4_5_6-like 100.0 7.3E-31 1.6E-35 263.5 22.4 182 173-364 21-205 (206)
9 cd08874 START_STARD9-like C-te 100.0 5E-31 1.1E-35 264.9 21.0 188 161-365 9-204 (205)
10 cd08909 START_STARD13-like C-t 100.0 4.5E-31 9.8E-36 264.5 19.9 174 174-365 27-203 (205)
11 cd08873 START_STARD14_15-like 100.0 6.9E-31 1.5E-35 267.8 21.5 179 145-336 22-206 (235)
12 cd08914 START_STARD15-like Lip 100.0 4.9E-31 1.1E-35 268.4 20.3 182 148-344 26-214 (236)
13 cd08871 START_STARD10-like Lip 100.0 1.5E-30 3.2E-35 264.2 21.8 181 171-366 20-202 (222)
14 cd08902 START_STARD4-like Lipi 100.0 2.2E-30 4.8E-35 256.3 19.7 180 172-364 21-201 (202)
15 cd08905 START_STARD1-like Chol 100.0 2.9E-30 6.4E-35 260.3 20.0 183 172-366 23-208 (209)
16 smart00234 START in StAR and p 100.0 1.5E-29 3.3E-34 252.0 23.3 182 171-365 16-201 (206)
17 cd08872 START_STARD11-like Cer 100.0 6.8E-30 1.5E-34 261.9 19.9 186 166-367 19-227 (235)
18 cd08911 START_STARD7-like Lipi 100.0 1.2E-29 2.6E-34 255.4 20.7 180 172-364 19-204 (207)
19 cd08913 START_STARD14-like Lip 100.0 2.8E-29 6E-34 257.5 20.2 191 148-351 29-226 (240)
20 cd08910 START_STARD2-like Lipi 100.0 2.2E-28 4.7E-33 246.4 18.9 177 172-364 23-204 (207)
21 cd08907 START_STARD8-like C-te 100.0 4.2E-28 9.2E-33 240.6 18.1 175 173-365 26-203 (205)
22 cd08908 START_STARD12-like C-t 100.0 6.3E-28 1.4E-32 242.0 19.1 172 175-365 28-202 (204)
23 cd08870 START_STARD2_7-like Li 100.0 1.8E-27 3.9E-32 239.8 21.7 178 174-365 22-207 (209)
24 PF01852 START: START domain; 100.0 8.2E-27 1.8E-31 231.9 23.6 186 171-368 16-204 (206)
25 cd00177 START Lipid-binding ST 100.0 9.2E-27 2E-31 226.8 22.8 167 174-351 15-182 (193)
26 cd08876 START_1 Uncharacterize 99.9 3E-26 6.6E-31 226.9 22.2 178 172-364 15-194 (195)
27 cd08877 START_2 Uncharacterize 99.9 1.8E-25 3.9E-30 225.9 17.3 187 165-365 13-213 (215)
28 KOG2761 START domain-containin 99.9 8.9E-22 1.9E-26 196.2 18.3 186 170-365 25-217 (219)
29 cd01251 PH_centaurin_alpha Cen 99.6 2.3E-14 5E-19 129.3 10.8 98 12-117 1-101 (103)
30 KOG1739 Serine/threonine prote 99.5 1.8E-14 3.9E-19 155.7 7.9 170 163-340 392-578 (611)
31 cd01260 PH_CNK Connector enhan 99.5 1.5E-13 3.3E-18 121.7 10.9 95 11-115 1-96 (96)
32 cd08875 START_ArGLABRA2_like C 99.5 1.3E-12 2.9E-17 133.0 16.7 133 202-338 58-200 (229)
33 cd01246 PH_oxysterol_bp Oxyste 99.4 6.7E-13 1.4E-17 114.9 10.8 91 12-115 1-91 (91)
34 cd01265 PH_PARIS-1 PARIS-1 ple 99.4 1.5E-12 3.3E-17 115.8 10.5 91 12-115 1-93 (95)
35 cd01233 Unc104 Unc-104 pleckst 99.4 1.7E-12 3.7E-17 116.4 10.6 96 10-116 2-98 (100)
36 cd01238 PH_Tec Tec pleckstrin 99.4 3.2E-12 7E-17 116.0 10.6 99 12-114 2-105 (106)
37 cd08864 SRPBCC_DUF3074 DUF3074 99.4 7.1E-12 1.5E-16 126.8 13.8 131 229-364 64-206 (208)
38 cd01257 PH_IRS Insulin recepto 99.4 4.5E-12 9.8E-17 114.2 11.0 91 10-114 2-100 (101)
39 cd01252 PH_cytohesin Cytohesin 99.3 8E-12 1.7E-16 116.3 12.1 97 11-118 1-115 (125)
40 cd01235 PH_SETbf Set binding f 99.3 9.2E-12 2E-16 110.7 10.9 95 12-116 1-101 (101)
41 cd01247 PH_GPBP Goodpasture an 99.3 9.5E-12 2.1E-16 110.0 10.8 90 12-114 1-90 (91)
42 PF00169 PH: PH domain; Inter 99.3 1.7E-11 3.6E-16 106.6 10.6 100 11-116 2-103 (104)
43 cd01264 PH_melted Melted pleck 99.3 1.5E-11 3.3E-16 110.6 10.0 99 12-116 2-101 (101)
44 cd01266 PH_Gab Gab (Grb2-assoc 99.3 2.5E-11 5.5E-16 110.3 10.2 96 13-115 2-107 (108)
45 cd01250 PH_centaurin Centaurin 99.2 4.4E-11 9.6E-16 104.1 10.2 94 12-115 1-94 (94)
46 cd01236 PH_outspread Outspread 99.2 3.9E-11 8.5E-16 108.7 10.1 94 12-113 1-101 (104)
47 cd01241 PH_Akt Akt pleckstrin 99.2 4E-11 8.7E-16 108.1 10.2 94 10-115 1-101 (102)
48 smart00233 PH Pleckstrin homol 99.2 1.8E-10 3.9E-15 98.2 12.1 100 11-116 2-101 (102)
49 cd01263 PH_anillin Anillin Ple 99.1 3.7E-10 8.1E-15 105.1 10.3 104 10-115 1-122 (122)
50 cd01254 PH_PLD Phospholipase D 99.1 6.6E-10 1.4E-14 103.3 9.9 97 12-115 1-121 (121)
51 cd01245 PH_RasGAP_CG5898 RAS G 99.0 5E-10 1.1E-14 100.5 7.7 92 13-114 2-97 (98)
52 cd01256 PH_dynamin Dynamin ple 99.0 2.6E-09 5.6E-14 94.5 9.3 97 11-115 2-104 (110)
53 KOG0930 Guanine nucleotide exc 99.0 1.4E-09 3E-14 111.7 8.8 98 9-118 259-377 (395)
54 cd01244 PH_RasGAP_CG9209 RAS_G 98.9 4.6E-09 1E-13 94.3 10.0 83 23-115 16-98 (98)
55 PF15413 PH_11: Pleckstrin hom 98.9 2.7E-09 5.8E-14 97.9 7.4 95 12-115 1-112 (112)
56 cd01253 PH_beta_spectrin Beta- 98.9 1.1E-08 2.3E-13 92.0 11.1 96 12-115 1-104 (104)
57 cd01219 PH_FGD FGD (faciogenit 98.9 1.1E-08 2.4E-13 92.1 11.1 97 11-118 3-101 (101)
58 cd00900 PH-like Pleckstrin hom 98.9 1.6E-08 3.5E-13 86.0 10.1 97 12-115 1-99 (99)
59 cd01237 Unc112 Unc-112 pleckst 98.9 7.9E-09 1.7E-13 93.5 8.2 91 21-116 12-103 (106)
60 cd00821 PH Pleckstrin homology 98.8 2.1E-08 4.6E-13 84.5 8.9 95 12-115 1-96 (96)
61 cd07813 COQ10p_like Coenzyme Q 98.8 6.1E-08 1.3E-12 90.5 12.0 134 207-365 2-136 (138)
62 cd08866 SRPBCC_11 Ligand-bindi 98.6 2.3E-06 5.1E-11 79.9 16.5 141 207-365 2-143 (144)
63 cd01220 PH_CDEP Chondrocyte-de 98.5 7.7E-07 1.7E-11 80.1 10.6 95 11-117 3-98 (99)
64 cd01230 PH_EFA6 EFA6 Pleckstri 98.5 1.1E-06 2.4E-11 81.5 11.5 99 12-117 2-112 (117)
65 PF15409 PH_8: Pleckstrin homo 98.4 5.5E-07 1.2E-11 79.4 7.6 84 14-115 1-88 (89)
66 PF11274 DUF3074: Protein of u 98.4 1.1E-05 2.5E-10 80.4 15.8 126 213-342 13-164 (184)
67 cd07819 SRPBCC_2 Ligand-bindin 98.3 1.6E-05 3.5E-10 73.2 14.0 134 206-363 4-139 (140)
68 cd05018 CoxG Carbon monoxide d 98.1 5E-05 1.1E-09 70.3 13.2 140 206-364 3-143 (144)
69 cd08861 OtcD1_ARO-CYC_like N-t 98.0 0.00015 3.3E-09 67.5 13.5 137 208-365 3-141 (142)
70 cd01234 PH_CADPS CADPS (Ca2+-d 97.8 3.6E-05 7.9E-10 69.1 5.9 91 12-115 4-109 (117)
71 PF03364 Polyketide_cyc: Polyk 97.8 0.00044 9.6E-09 63.5 13.3 108 212-340 1-111 (130)
72 PF15410 PH_9: Pleckstrin homo 97.8 0.00016 3.4E-09 67.2 9.8 99 12-116 2-118 (119)
73 cd07817 SRPBCC_8 Ligand-bindin 97.7 0.0019 4E-08 59.5 15.1 135 206-365 2-138 (139)
74 KOG0690 Serine/threonine prote 97.6 7.4E-05 1.6E-09 79.6 5.6 99 9-117 14-117 (516)
75 cd08860 TcmN_ARO-CYC_like N-te 97.6 0.0028 6.1E-08 60.8 16.0 137 208-366 5-144 (146)
76 cd07821 PYR_PYL_RCAR_like Pyra 97.6 0.0025 5.4E-08 58.3 14.8 138 205-364 2-139 (140)
77 cd01259 PH_Apbb1ip Apbb1ip (Am 97.5 0.00026 5.6E-09 64.7 7.2 103 11-116 1-108 (114)
78 cd01243 PH_MRCK MRCK (myotonic 97.5 0.0012 2.7E-08 61.1 10.7 105 10-115 2-118 (122)
79 PF12814 Mcp5_PH: Meiotic cell 97.4 0.0016 3.4E-08 60.9 11.5 102 13-117 12-122 (123)
80 PRK10724 hypothetical protein; 97.4 0.0039 8.5E-08 60.8 14.5 116 203-340 14-129 (158)
81 PF10604 Polyketide_cyc2: Poly 97.2 0.037 8E-07 50.5 18.1 134 206-364 4-138 (139)
82 cd01239 PH_PKD Protein kinase 97.2 0.0017 3.7E-08 59.8 8.6 95 12-115 2-117 (117)
83 cd01242 PH_ROK Rok (Rho- assoc 97.0 0.0073 1.6E-07 55.4 10.7 105 11-116 1-110 (112)
84 cd08865 SRPBCC_10 Ligand-bindi 96.9 0.024 5.3E-07 51.6 13.8 133 208-365 3-139 (140)
85 KOG2200 Tumour suppressor prot 96.9 0.00017 3.6E-09 81.4 -0.7 89 264-365 574-663 (674)
86 cd01224 PH_Collybistin Collybi 96.8 0.019 4E-07 52.8 11.8 98 12-114 4-105 (109)
87 KOG1090 Predicted dual-specifi 96.8 0.00074 1.6E-08 79.7 3.0 92 12-116 1636-1731(1732)
88 cd07823 SRPBCC_5 Ligand-bindin 96.8 0.037 8E-07 52.3 13.9 141 207-365 2-145 (146)
89 cd01218 PH_phafin2 Phafin2 Pl 96.7 0.016 3.5E-07 52.8 10.5 96 11-118 5-100 (104)
90 cd07824 SRPBCC_6 Ligand-bindin 96.6 0.082 1.8E-06 49.9 15.2 108 206-336 3-113 (146)
91 PLN02866 phospholipase D 96.6 0.011 2.3E-07 71.9 10.9 101 10-118 182-309 (1068)
92 PF15408 PH_7: Pleckstrin homo 96.6 0.001 2.2E-08 57.9 1.8 94 13-114 1-95 (104)
93 cd07812 SRPBCC START/RHO_alpha 96.5 0.13 2.8E-06 45.3 14.7 114 207-339 2-115 (141)
94 KOG3640 Actin binding protein 96.4 0.0059 1.3E-07 72.4 7.2 110 7-118 987-1108(1116)
95 PTZ00267 NIMA-related protein 96.3 0.0085 1.8E-07 67.8 7.3 100 7-116 374-476 (478)
96 cd01261 PH_SOS Son of Sevenles 96.3 0.039 8.3E-07 51.0 10.2 97 11-117 5-110 (112)
97 KOG3751 Growth factor receptor 96.2 0.011 2.3E-07 66.6 7.5 105 6-116 313-424 (622)
98 cd01249 PH_oligophrenin Oligop 96.1 0.051 1.1E-06 49.5 10.0 93 12-113 1-102 (104)
99 cd01258 PH_syntrophin Syntroph 95.9 0.024 5.1E-07 52.1 6.7 101 13-114 2-107 (108)
100 cd08862 SRPBCC_Smu440-like Lig 95.8 0.47 1E-05 43.4 15.1 40 206-246 3-42 (138)
101 cd07818 SRPBCC_1 Ligand-bindin 95.5 0.41 8.8E-06 44.9 14.1 38 205-243 3-40 (150)
102 PF06240 COXG: Carbon monoxide 95.4 0.73 1.6E-05 43.6 15.3 128 208-354 1-128 (140)
103 PF14593 PH_3: PH domain; PDB: 95.4 0.12 2.5E-06 47.3 9.3 89 9-118 12-101 (104)
104 cd01221 PH_ephexin Ephexin Ple 95.4 0.12 2.5E-06 48.8 9.4 96 12-113 5-119 (125)
105 KOG2059 Ras GTPase-activating 95.1 0.033 7.1E-07 64.7 5.8 100 10-118 565-666 (800)
106 cd07822 SRPBCC_4 Ligand-bindin 94.8 1.5 3.2E-05 39.8 15.3 106 206-331 2-108 (141)
107 COG2867 Oligoketide cyclase/li 93.7 0.47 1E-05 45.7 9.4 116 204-340 2-117 (146)
108 cd01222 PH_clg Clg (common-sit 93.3 0.78 1.7E-05 41.4 9.8 92 11-117 5-96 (97)
109 cd07825 SRPBCC_7 Ligand-bindin 92.9 5.9 0.00013 36.6 15.7 30 206-236 2-31 (144)
110 cd07814 SRPBCC_CalC_Aha1-like 92.4 3.8 8.2E-05 37.3 13.4 30 206-236 2-31 (139)
111 PTZ00283 serine/threonine prot 91.3 0.43 9.3E-06 54.6 7.0 97 11-116 374-489 (496)
112 cd01223 PH_Vav Vav pleckstrin 91.3 1.3 2.9E-05 41.2 8.7 90 29-119 20-114 (116)
113 cd07816 Bet_v1-like Ligand-bin 90.4 11 0.00024 35.9 14.8 119 206-337 3-122 (148)
114 cd07820 SRPBCC_3 Ligand-bindin 90.3 7.5 0.00016 36.1 13.3 108 208-336 3-113 (137)
115 COG3427 Carbon monoxide dehydr 88.3 11 0.00023 36.7 12.7 128 206-354 3-132 (146)
116 COG5637 Predicted integral mem 88.3 10 0.00022 38.0 12.6 134 205-366 71-210 (217)
117 cd01232 PH_TRIO Trio pleckstri 87.2 5.7 0.00012 36.9 9.9 91 22-117 21-113 (114)
118 KOG4424 Predicted Rho/Rac guan 86.8 1.5 3.2E-05 50.6 6.8 96 12-118 274-371 (623)
119 cd01225 PH_Cool_Pix Cool (clon 86.5 2.7 6E-05 38.8 7.2 79 26-115 25-108 (111)
120 KOG0521 Putative GTPase activa 85.7 0.61 1.3E-05 56.4 3.3 95 12-118 276-370 (785)
121 KOG3845 MLN, STAR and related 85.4 0.18 4E-06 52.6 -1.1 138 176-321 27-164 (241)
122 KOG1117 Rho- and Arf-GTPase ac 84.5 1.6 3.4E-05 52.3 5.7 94 12-115 1032-1130(1186)
123 KOG1117 Rho- and Arf-GTPase ac 84.3 3.9 8.5E-05 49.2 8.8 97 12-115 494-600 (1186)
124 KOG0248 Cytoplasmic protein Ma 82.3 1.4 3E-05 51.6 4.1 92 12-117 251-342 (936)
125 cd08899 SRPBCC_CalC_Aha1-like_ 79.1 34 0.00074 32.7 12.1 32 203-235 10-41 (157)
126 KOG1451 Oligophrenin-1 and rel 77.7 6.7 0.00014 45.5 7.5 101 7-115 262-366 (812)
127 KOG3723 PH domain protein Melt 74.0 1.5 3.2E-05 50.5 1.2 103 10-120 735-840 (851)
128 cd01240 PH_beta-ARK Beta adren 72.1 5.1 0.00011 37.0 3.9 96 9-117 2-99 (116)
129 KOG3543 Ca2+-dependent activat 71.5 2 4.3E-05 49.8 1.4 93 12-117 466-566 (1218)
130 cd01262 PH_PDK1 3-Phosphoinosi 70.8 16 0.00034 32.7 6.6 80 12-115 3-87 (89)
131 KOG1739 Serine/threonine prote 70.1 4.3 9.3E-05 46.0 3.6 93 11-118 19-118 (611)
132 KOG3531 Rho guanine nucleotide 66.5 1.8 4E-05 51.6 -0.1 92 12-115 926-1018(1036)
133 KOG3549 Syntrophins (type gamm 66.2 7.6 0.00016 42.4 4.4 108 6-117 277-387 (505)
134 cd08893 SRPBCC_CalC_Aha1-like_ 65.4 1E+02 0.0023 27.7 14.3 30 206-236 2-31 (136)
135 PF15405 PH_5: Pleckstrin homo 62.8 12 0.00025 35.8 4.6 39 77-115 96-134 (135)
136 cd08898 SRPBCC_CalC_Aha1-like_ 61.3 1.3E+02 0.0028 27.4 14.0 31 206-237 3-33 (145)
137 KOG1738 Membrane-associated gu 61.0 2.3 5E-05 49.5 -0.6 38 11-48 563-600 (638)
138 cd01248 PH_PLC Phospholipase C 61.0 23 0.0005 32.3 6.1 36 79-114 78-114 (115)
139 KOG4047 Docking protein 1 (p62 56.3 9.7 0.00021 43.0 3.2 105 6-117 4-118 (429)
140 TIGR01599 PYST-A Plasmodium yo 54.8 2.3E+02 0.005 29.2 12.6 119 204-329 59-208 (208)
141 cd01227 PH_Dbs Dbs (DBL's big 54.1 1.4E+02 0.0029 28.7 10.1 86 31-119 32-118 (133)
142 cd01226 PH_exo84 Exocyst compl 48.1 91 0.002 28.5 7.6 94 11-117 3-99 (100)
143 KOG1264 Phospholipase C [Lipid 43.3 29 0.00064 42.0 4.5 43 78-120 872-914 (1267)
144 cd01228 PH_BCR-related BCR (br 41.1 29 0.00063 31.4 3.2 81 11-115 4-93 (96)
145 KOG1737 Oxysterol-binding prot 40.6 17 0.00036 44.2 2.1 37 11-50 78-114 (799)
146 PF11687 DUF3284: Domain of un 40.3 3.1E+02 0.0066 25.5 10.1 106 206-340 1-108 (120)
147 PF15406 PH_6: Pleckstrin homo 38.1 87 0.0019 29.1 5.8 62 38-113 48-110 (112)
148 COG3832 Uncharacterized conser 31.7 4.4E+02 0.0096 25.1 10.0 32 203-235 7-38 (149)
149 KOG0932 Guanine nucleotide exc 31.6 56 0.0012 38.2 4.3 98 12-117 508-618 (774)
150 PF14784 ECIST_Cterm: C-termin 30.9 93 0.002 29.6 5.0 18 97-114 94-111 (126)
151 PHA02770 hypothetical protein; 27.0 1.8E+02 0.004 24.5 5.4 46 33-98 25-70 (81)
152 cd08895 SRPBCC_CalC_Aha1-like_ 25.8 5.4E+02 0.012 23.9 17.3 29 206-235 2-30 (146)
153 KOG0976 Rho/Rac1-interacting s 23.3 36 0.00077 41.1 0.9 105 10-117 812-920 (1265)
154 cd01231 PH_Lnk LNK-family Plec 21.4 1.5E+02 0.0033 27.3 4.3 32 79-114 75-106 (107)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=2.3e-160 Score=1341.34 Aligned_cols=617 Identities=32% Similarity=0.585 Sum_probs=545.6
Q ss_pred CCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEe
Q 005831 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (675)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~ 87 (675)
+.+.||||||++|+||||++|||+|||||+||+|+|||++|.+| ++|||+++|||||||||+|||+|||++||||+|||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 46789999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHHHHHhCCCCCCCC------------------cccCCCC-----------CCCcc
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKGGPHQGVG------------------DHIGCPN-----------SPWES 138 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~~~~~~~~~------------------~~~~~~~-----------~~~~~ 138 (675)
+++++++++|||.|+|||++||+||++|++|+......+ ++.+++. .+.++
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 999999999999999999999999999999753221110 1112221 24567
Q ss_pred cccccCCCCCCCccccCcccCCc--ccccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcH
Q 005831 139 FRLSGSSRASHTKSIDWTLCSGT--HMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTS 216 (675)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~asp 216 (675)
+|..+||+||+.+.++||...+. .|+++.+|+++.+.|+|++|+||+|||++..+.+++++ +..++|||+|+|+|+|
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~-~~~~~mKavGVV~asp 239 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR-SCSRAMKAVGVVEATC 239 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc-cCCceeEEEEEecCCH
Confidence 77789999999999999865553 37899999999999999999999999999988887766 4569999999999999
Q ss_pred HHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCC
Q 005831 217 EAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKK 296 (675)
Q Consensus 217 e~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~ 296 (675)
++||++||++++.|.+||.++.++++||+||+||+|+|.++++.|+|+.+++||||++|||++.+||+|+|+++|++||+
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998889999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeceEEEEEeCC---CCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 005831 297 CPRQKGSVRACLKSGGYVITPMN---HGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQGNYSS 373 (675)
Q Consensus 297 ~Pp~~G~VRa~i~~gGwvI~Pl~---~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~~~~~~~~~~ 373 (675)
|||++|||||++++|||+|.|+. +.++|+|+|++|+|++||+|+|.++++++++++||++||+|||||.++++.++
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999983 33689999999999999999999999999999999999999999999998877
Q ss_pred CccccccccccccccccCCCcccCCCcCCC--CCCCCcccccccccccccccCCCcccccccCCCCCCCCCCCCCCCCCC
Q 005831 374 PEFLSGELTRNMRMHQTDGNMVQMPTEDGN--SKKNTSEEVDQVSSEHASLVGLNDAADEFFDVPEPSDYDDSENGWTSD 451 (675)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~de~~d~~~~~~~~~~~~~~~~~ 451 (675)
.+|+++|.+++.. ..++++++ ++...+.+.+...+.+++++++++++|||||+||++++....
T Consensus 399 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~------ 463 (719)
T PLN00188 399 -------PPRIPVMVNMASA--SVSSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETT------ 463 (719)
T ss_pred -------cccceeecccccc--cccccccccccccccccccccccchhhhhhccccccchhccCCCcccccccc------
Confidence 7888888887632 22222221 111222333334455688899999999999999987631100
Q ss_pred CCCCCCCcCCCCCcccccccchhhhhhHHhhhccccccccCcccCCCc-cccCcccccCCCCCCCCccccCCCCceEEeC
Q 005831 452 FGPEMNSQDTRHPKISTAAGFVRKLHDLAVQKRGYVDLQGTAKEDNFS-CCYGTTLQKDPTCTLPCSWTSTDPSTFLIRG 530 (675)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~Ws~p~~~~F~VRG 530 (675)
.. + +..+. ..+.+++.|| ++|+|+|++++.+++.+||++|++++|+|||
T Consensus 464 ---k~---~--------~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG 513 (719)
T PLN00188 464 ---KN---E--------TKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRS 513 (719)
T ss_pred ---cc---c--------ccccc----------------cccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcC
Confidence 00 0 00000 2345667888 9999999999999999999999999999999
Q ss_pred CCccCCCccccCCcCcccEeEEeEeecCCccccccCCCCChhhhhhhhcCCceEEEEEEEeCCCCCeEEEEEEeeCCCCC
Q 005831 531 KNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPGSTTYSLALYYMMTTPVK 610 (675)
Q Consensus 531 ~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~dhia~~~~~~~~~~~~~~~~p~~fivN~qvP~~p~~slV~Yf~~~~~~~ 610 (675)
+|||+||+|||||++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++++ ++
T Consensus 514 ~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys~V~Yf~~~~-l~ 590 (719)
T PLN00188 514 KNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYSMVFYFVTKE-LV 590 (719)
T ss_pred CCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceEEEEEEeccC-CC
Confidence 999999999999999999999999999999999999999999986554 489999999999999999999999965 77
Q ss_pred CchhHHHhhcCCccccccceEEeeeeccCcceeeeccCCcceEeeccceeEEEecCCeEEEEecC
Q 005831 611 DAPLLESFINGDDAYRNSRFKLIPYISEGSWIVKQSVGKKACLIGQALEINYFHGKNYLEVIILF 675 (675)
Q Consensus 611 ~~~Ll~rF~~gdD~fRn~RfKlIp~vv~g~wivk~avg~~p~l~g~~~~~~y~~g~nylEiDvd~ 675 (675)
+++||+||++|||+|||+||||||+|++||||||||||+|||||||||+|+||+|+||||||||+
T Consensus 591 ~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi 655 (719)
T PLN00188 591 PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDI 655 (719)
T ss_pred CchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEee
Confidence 89999999999999999999999999999999999999999999999999999999999999996
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=8.3e-54 Score=434.77 Aligned_cols=157 Identities=50% Similarity=0.896 Sum_probs=151.7
Q ss_pred cccCCCCceEEeCCCccCCCccccCCcCcccEeEEeEeecCCccccccCCCCChhhhhhhhcCCceEEEEEEEeCC----
Q 005831 518 WTSTDPSTFLIRGKNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPG---- 593 (675)
Q Consensus 518 Ws~p~~~~F~VRG~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~dhia~~~~~~~~~~~~~~~~p~~fivN~qvP~---- 593 (675)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|++++++++..+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999877766 57899999999999
Q ss_pred ------CCCeEEEEEEeeCCCCCC------chhHHHhhcCC---ccccccceEEeeeeccCcceeeecc-CCcceEeecc
Q 005831 594 ------STTYSLALYYMMTTPVKD------APLLESFINGD---DAYRNSRFKLIPYISEGSWIVKQSV-GKKACLIGQA 657 (675)
Q Consensus 594 ------~p~~slV~Yf~~~~~~~~------~~Ll~rF~~gd---D~fRn~RfKlIp~vv~g~wivk~av-g~~p~l~g~~ 657 (675)
+|+||+|+||+++++++. .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 999999999999998876 68999999999 9999999999999999999999999 9999999999
Q ss_pred ceeEEEecCCeEEEEecC
Q 005831 658 LEINYFHGKNYLEVIILF 675 (675)
Q Consensus 658 ~~~~y~~g~nylEiDvd~ 675 (675)
++|+||+|+||||||||+
T Consensus 160 ~~~~y~~g~~y~E~dvdi 177 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDI 177 (227)
T ss_pred cceEEeeCCCeEEEEEEe
Confidence 999999999999999996
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.1e-33 Score=283.87 Aligned_cols=183 Identities=14% Similarity=0.190 Sum_probs=162.2
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceE
Q 005831 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (675)
Q Consensus 172 s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~td 251 (675)
..++|++.+..+|+.||.+.... ..++++|++|+|+++|++|++++.+.. .|.+||+++.++++||+||++|+
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~ 92 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTF 92 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcE
Confidence 35899999999999999996432 346999999999999999999999876 79999999999999999999999
Q ss_pred EEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEEE
Q 005831 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHML 330 (675)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-~~~t~VT~i~ 330 (675)
|+|.++++ .....+++||||.+|+|++.+++.|++++.|++||+|||++|||||++++|||+|+|+++ +++|.++|++
T Consensus 93 I~~~~~~~-~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~ 171 (204)
T cd08904 93 ICHTITQS-FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFV 171 (204)
T ss_pred EEEEeccc-ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEE
Confidence 99999865 222349999999999999877788999999999999999999999999999999999954 4579999999
Q ss_pred eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 005831 331 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 331 ~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
++|||||+|.++ .++.++..|++.+..|++-+
T Consensus 172 ~~DlkG~lP~~v--v~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 172 QPELRGNLSRSV--IEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EeCCCCCCCHHH--HHHHhHHHHHHHHHHHHHhc
Confidence 999999999754 56788888999888888643
No 4
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=5.4e-33 Score=279.28 Aligned_cols=185 Identities=19% Similarity=0.287 Sum_probs=160.4
Q ss_pred ccCCCCCEEEEeeC-CeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHH-hCCCCccccccccceeEEEEeeC
Q 005831 170 VIAPSPWTIFGCQN-GLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLM-SLGASRSVWDFCFYRGCVVEHLD 247 (675)
Q Consensus 170 v~s~~~W~lv~~~n-GIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~-d~d~~R~eWD~~~~~~~VVE~id 247 (675)
+....+|++..+++ ||+||++..++ ..+++|+++++++++++||+.|+ |.+ .|++||+++.++++|+++|
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~-------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG-------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVID 91 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC-------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEec
Confidence 34456999999997 99999998663 24789999999999999997554 777 7999999999999999999
Q ss_pred CceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEE
Q 005831 248 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVV 326 (675)
Q Consensus 248 ~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-~~~t~V 326 (675)
++++|+|+.+++. +||++++||||++|+|++. ++.|+|+..|++||.+|+++|||||....|||+|+|+++ .++|.|
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~-~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v 169 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIR-ENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNF 169 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEec-CCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEE
Confidence 9999999988653 5689999999999999985 478999999999999999999999999999999999964 358999
Q ss_pred EEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 005831 327 KHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (675)
Q Consensus 327 T~i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~~~ 366 (675)
+|++++|||||+|.|+ .+..+...+++++++||++++.
T Consensus 170 ~~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 170 TWLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999765 3334445566788899999864
No 5
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=6e-32 Score=272.62 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=156.9
Q ss_pred ccCCCCCEEEEee-CCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeeC
Q 005831 170 VIAPSPWTIFGCQ-NGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLD 247 (675)
Q Consensus 170 v~s~~~W~lv~~~-nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf-~vL~d~d~~R~eWD~~~~~~~VVE~id 247 (675)
+.+.++|++.... +||+||++..++ +. ++||+++++++|++.|| ++|.|++ .|.+||+++.++++|++++
T Consensus 21 l~~~~~W~l~~~~~~gi~V~s~~~~~------~~-~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~~ 92 (209)
T cd08906 21 LAQEENWKFEKNNDNGDTVYTLEVPF------HG-KTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRVD 92 (209)
T ss_pred hhcccCCEEEEecCCCCEEEEeccCC------CC-cEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeecc
Confidence 4456799998765 999999986653 33 89999999999999997 6889999 7999999999999999999
Q ss_pred CceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC-CCCCeeEE
Q 005831 248 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM-NHGKKSVV 326 (675)
Q Consensus 248 ~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl-~~~~~t~V 326 (675)
++++|+|....| |++||+++||||++|+|.+..++ |+++..|+.|+.+|+++|||||+++.+||.|.|. .++++|+|
T Consensus 93 ~~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~v 170 (209)
T cd08906 93 DNTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTF 170 (209)
T ss_pred CCcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEE
Confidence 999999944433 55669999999999999986554 8889999999999999999999999999999997 44558999
Q ss_pred EEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 005831 327 KHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (675)
Q Consensus 327 T~i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~~~ 366 (675)
||++++|||||||.++ .+..++-.+++++.+||++++.
T Consensus 171 t~~~~~Dp~G~lP~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 171 IWILNTDLKGRLPRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEecCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999753 2334444566788899999863
No 6
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=1.4e-31 Score=267.54 Aligned_cols=176 Identities=26% Similarity=0.383 Sum_probs=152.0
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEE
Q 005831 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 252 (675)
Q Consensus 173 ~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdI 252 (675)
..+|++..+++||+||.+..+.. +..++||++++|++++++|++.|++ .|.+||+.+.++++|++++++++|
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~-----~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i 89 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDG-----HPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEV 89 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCC-----CcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEE
Confidence 67999999999999999976431 3578999999999999999999984 589999999999999999999999
Q ss_pred EEEEEccCCCCCCcCCceEEEEEEEEEc-CCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 005831 253 IHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (675)
Q Consensus 253 vY~~~~~~~~P~pvs~RDfV~lR~wr~~-~dGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~ 330 (675)
+|+.++ .|||+++||||++|+|+.. ++|+|+|+.+|+.|| .+|+ |||||....|||+|+|++++ +|+|||++
T Consensus 90 ~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~~ 163 (197)
T cd08869 90 YQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHIC 163 (197)
T ss_pred EEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEEE
Confidence 999983 5889999999999999874 678899999999995 6676 99999999999999999754 89999999
Q ss_pred eeeCCCCcccccc-cchhhHHHHHHHHHHHHHHHHHh
Q 005831 331 AIDWKCWRSYLQP-SSARSITIRMLGRVAALRELFRA 366 (675)
Q Consensus 331 ~vDpkGwip~~~~-~~~~~~~~~mL~~va~LRe~~~~ 366 (675)
++|||||+|.|+. .+. ++... .|.+||+.|.+
T Consensus 164 ~~Dp~G~iP~wl~N~~~-~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 164 RVDLRGRSPEWYNKVYG-HLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred EECCCCCCCceeecchH-hHHHH---HHHHHHhhccC
Confidence 9999999996544 444 43333 45689998863
No 7
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.98 E-value=2.4e-31 Score=268.04 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=155.9
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeeCCce
Q 005831 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHT 250 (675)
Q Consensus 172 s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~-~R~eWD~~~~~~~VVE~id~~t 250 (675)
.+++|++...+||++||++.... ..+..||++|++++++++|+++|+|... .|.+||+++.++++||++|+++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~ 93 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDV 93 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCE
Confidence 46789999999999999995421 1346799999999999999999997753 5799999999999999999999
Q ss_pred EEEEEEEccCCCC-CCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEE
Q 005831 251 DIIHKQLYSDWLP-WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKH 328 (675)
Q Consensus 251 dIvY~~~~~~~~P-~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~VT~ 328 (675)
.|+|..+ + |.+ +++++||||++|+|++.++|+|++...|++||.||+++|||||+..++||+++|+. ++++|.|||
T Consensus 94 ~i~~~~~-p-~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~ 171 (208)
T cd08903 94 SVCRTVT-P-SAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVS 171 (208)
T ss_pred EEEEEec-c-hhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEE
Confidence 9988854 1 221 23999999999999999999999999999999999999999999999999999994 345899999
Q ss_pred EEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 005831 329 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 329 i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
++++|||||||.++ .+..++..++.++.+||+.+.
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 172 FFQTDLSGYLPQTV--VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEEeccCCCcCHHH--HHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999653 233444556678889999875
No 8
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=7.3e-31 Score=263.49 Aligned_cols=182 Identities=17% Similarity=0.170 Sum_probs=155.3
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHh--CCCCccccccccceeEEEEeeCCce
Q 005831 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS--LGASRSVWDFCFYRGCVVEHLDGHT 250 (675)
Q Consensus 173 ~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d--~d~~R~eWD~~~~~~~VVE~id~~t 250 (675)
..+|++...++|++||++.... ...+++|+++++++++++|+++|++ .+ .|.+||+.+.++++|+++++++
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~~ 93 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPSTE------FTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISEDL 93 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCCC------CCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCCe
Confidence 3789999999999999985321 2347899999999999999999998 55 7999999999999999999999
Q ss_pred EEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEE
Q 005831 251 DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHM 329 (675)
Q Consensus 251 dIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~VT~i 329 (675)
+|+|+.+.. ...+++++||||++++|++.++|.|+++..|++||.+|+.+|||||.+..|||+|+|+. +.++|.+||+
T Consensus 94 ~i~~~~~p~-~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~ 172 (206)
T cd08867 94 CVGRTITPS-AAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLY 172 (206)
T ss_pred EEEEEEccc-cccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEE
Confidence 999986521 11245999999999999998888999999999999999999999999999999999984 3457999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 005831 330 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 330 ~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
+++|||||||.++ .+..+...++..+..||+++
T Consensus 173 ~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 173 VQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 9999999999754 23344455667778899875
No 9
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=5e-31 Score=264.90 Aligned_cols=188 Identities=12% Similarity=0.163 Sum_probs=163.5
Q ss_pred cccccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCcccccccccee
Q 005831 161 THMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRG 240 (675)
Q Consensus 161 ~~~~~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~ 240 (675)
+.|..++....+.++|++..+++||+||++..++ ....||++++|++|+++|+++|.|++ .|++||..+.++
T Consensus 9 ~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~-------~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~ 80 (205)
T cd08874 9 SVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG-------TYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTA 80 (205)
T ss_pred hhhHHHHHhhhccCCcEEEecCCCEEEEEecCCC-------CcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhhe
Confidence 3466778888899999999999999999997552 45789999999999999999999999 799999999999
Q ss_pred EEEEeeCCceEEEEEEEccCCCCCCc--CCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCC-CeEEEEEeceEEEEEe
Q 005831 241 CVVEHLDGHTDIIHKQLYSDWLPWGM--KRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQK-GSVRACLKSGGYVITP 317 (675)
Q Consensus 241 ~VVE~id~~tdIvY~~~~~~~~P~pv--s~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~-G~VRa~i~~gGwvI~P 317 (675)
++|+++++++.|+|+++. .|||+ ++||||+++.|+. .++.++|..+|+.||.+|+.+ |||||..+.|||+|+|
T Consensus 81 ~vl~~~~~d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~-~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P 156 (205)
T cd08874 81 RIHKTFTEDICLVYLVHE---TPLCLLKQPRDFCCLQVEAK-EGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEP 156 (205)
T ss_pred eeeeecCCCeEEEEEEec---CCCCCCCCCCeEEEEEEEEE-CCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEE
Confidence 999999999999999983 46666 9999999999877 455666999999999999996 9999999999999999
Q ss_pred C---CCCCeeEEEEEEeeeCC-CCccc-ccccchhhHHHHHHHHHHHHHHHHH
Q 005831 318 M---NHGKKSVVKHMLAIDWK-CWRSY-LQPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 318 l---~~~~~t~VT~i~~vDpk-Gwip~-~~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
+ +++ +|+|||++|+||| |-||. +.+.+....|. .||.|+.++.
T Consensus 157 ~~~~g~~-~t~vty~~q~DPggg~iP~~l~N~~~~~~p~----~~~~~~~~~~ 204 (205)
T cd08874 157 VTVEGNQ-YTRVIYIAQVALCGPDVPAQLLSSLSKRQPL----VIARLALFLE 204 (205)
T ss_pred CccCCCC-cEEEEEEEEECCCCCCCCHHHHhHHHHhccH----HHHHHHHHhh
Confidence 9 544 8999999999999 79995 45555555444 6788998876
No 10
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=4.5e-31 Score=264.48 Aligned_cols=174 Identities=24% Similarity=0.352 Sum_probs=147.1
Q ss_pred CCCEEEEeeCCeEEEE-EeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEE
Q 005831 174 SPWTIFGCQNGLRLFK-EGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDI 252 (675)
Q Consensus 174 ~~W~lv~~~nGIrVy~-r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdI 252 (675)
.+|......|++.++- +..++ +..+++|+++.|+++|++|++.+.+ .|++||.++.++++||++|+|++|
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d~------~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi 97 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGDG------NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEV 97 (205)
T ss_pred cCCcccCCcCCeEEEEecCCCC------CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEE
Confidence 3566666666666633 33343 4678999999999999999998874 599999999999999999999999
Q ss_pred EEEEEccCCCCCCcCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 005831 253 IHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 331 (675)
Q Consensus 253 vY~~~~~~~~P~pvs~RDfV~lR~wr~~-~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~ 331 (675)
+|+.++ .|+|+++||||++|+|+++ ++|+|+|+++|++|+++|+. |+|||....+||+|+|++++ +|+|||+++
T Consensus 98 ~~y~~~---~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~ 172 (205)
T cd08909 98 YQYVLN---CMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICR 172 (205)
T ss_pred EEEEee---cCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEE
Confidence 999995 3668999999999999987 58999999999999999995 99999999999999999765 799999999
Q ss_pred eeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 005831 332 IDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 332 vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
+|||||+|.| .+.+++-++. .++.||+.|.
T Consensus 173 vDpkG~~P~W~~n~~g~~~~~----~~~~~r~sf~ 203 (205)
T cd08909 173 VDLKGHSPEWYNKGFGHLCAA----EAARIRNSFQ 203 (205)
T ss_pred ecCCCCChHHHHHhHHHHHHH----HHHHHHhhcc
Confidence 9999999964 5555544443 4668999875
No 11
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.97 E-value=6.9e-31 Score=267.82 Aligned_cols=179 Identities=18% Similarity=0.186 Sum_probs=160.9
Q ss_pred CCCCCCccccCcccCCcc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH
Q 005831 145 SRASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF 220 (675)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~----~~~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf 220 (675)
...-..+|+.|+..|+.+ |..|+..+.+.++|++..+++||+||++.. +....||+++++++++++|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~ 93 (235)
T cd08873 22 LQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAF 93 (235)
T ss_pred cCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHH
Confidence 344456889999999965 688999999999999999999999999972 34688999999999999999
Q ss_pred HHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEc-CC-CcEEEEEEecCCCCCC
Q 005831 221 QTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DD-GTYVILYHSVFHKKCP 298 (675)
Q Consensus 221 ~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~-~d-GsyvI~~~SV~hp~~P 298 (675)
++|.|.+ .|.+||.++.++++|++++++..|+|+++ .+|||+++||||++++|++. ++ +.|+|..+|+.|+.+|
T Consensus 94 dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~---p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~P 169 (235)
T cd08873 94 DLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTM---PSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVP 169 (235)
T ss_pred HHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEc---CCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCC
Confidence 9999999 89999999999999999999888888876 45889999999999999984 33 3599999999999999
Q ss_pred CCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 005831 299 RQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (675)
Q Consensus 299 p~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkG 336 (675)
|++|||||....|||+|+|++++ +|.|||++|+|||-
T Consensus 170 p~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 170 QTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred CCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 99999999999999999999755 79999999999873
No 12
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=4.9e-31 Score=268.39 Aligned_cols=182 Identities=17% Similarity=0.285 Sum_probs=163.5
Q ss_pred CCCccccCcccCCcc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHH
Q 005831 148 SHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL 223 (675)
Q Consensus 148 ~~~~~~~~~~~~~~~----~~~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL 223 (675)
-..+++.|+..|+.+ |..++....+.++|++..+++||+||++. + ++...||+++++++|+++++++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~-------s~~l~fk~e~~vdvs~~~l~~LL 97 (236)
T cd08914 26 EVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E-------HDVLSVWVEKHVKRPAHLAYRLL 97 (236)
T ss_pred cCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C-------CCcEEEEEEEEEcCCHHHHHHHH
Confidence 345789999999955 68899999999999999999999999995 3 45689999999999999999999
Q ss_pred HhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCC-CcCCceEEEEEEEEEcC-CCc-EEEEEEecCCCCCCCC
Q 005831 224 MSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRRED-DGT-YVILYHSVFHKKCPRQ 300 (675)
Q Consensus 224 ~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~-pvs~RDfV~lR~wr~~~-dGs-yvI~~~SV~hp~~Pp~ 300 (675)
.|++ .|++||.++.++++|+++|++.+ +|+.. ..|| |+++||||+++.+++.. +|. |+|..+|+.||.+|+.
T Consensus 98 ~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~---~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~ 172 (236)
T cd08914 98 SDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHIT---CPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPS 172 (236)
T ss_pred hChh-hhchhHHhhceEEEEEEeCCCcC-EEEEe---cCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCC
Confidence 9999 89999999999999999999988 67766 4588 89999999999988765 775 9999999999999999
Q ss_pred CCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccccc
Q 005831 301 KGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS 344 (675)
Q Consensus 301 ~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~ 344 (675)
+||||+.....||+|+|++++ +|.|||++|+|| ||+|.|..+
T Consensus 173 kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~n 214 (236)
T cd08914 173 PQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAGN 214 (236)
T ss_pred CCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEEe
Confidence 999999999999999999755 899999999999 999976443
No 13
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=1.5e-30 Score=264.17 Aligned_cols=181 Identities=22% Similarity=0.309 Sum_probs=157.2
Q ss_pred cCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCc
Q 005831 171 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (675)
Q Consensus 171 ~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~ 249 (675)
....+|+++.+++||+||++..++ +..+++|+++++ +++++.++++|+|.+ .|++||+++.++++|++++++
T Consensus 20 ~~~~~W~~~~~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 20 DSTDGWKLKYNKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred cCCCCcEEEEcCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCC
Confidence 345689999999999999997664 456899999987 799999999999988 899999999999999999999
Q ss_pred eEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 005831 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 329 (675)
Q Consensus 250 tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i 329 (675)
++|+|+.+ .+|||+++||||++|.|+..+ |.|+|+.+|+.|+.+|+.+|+|||....+||+|+|++.+ +|.|||+
T Consensus 93 ~~i~y~~~---~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~ 167 (222)
T cd08871 93 NDIGYYSA---KCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYV 167 (222)
T ss_pred CEEEEEEe---ECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEE
Confidence 99999998 568999999999999998854 889999999999999999999999999999999999744 7999999
Q ss_pred EeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 005831 330 LAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRA 366 (675)
Q Consensus 330 ~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~~ 366 (675)
+++|||||||.+ ++.+....+..+| .+||+.+.+
T Consensus 168 ~~~Dp~G~IP~~lvN~~~~~~~~~~l---~~l~k~~~~ 202 (222)
T cd08871 168 TQNDPKGSLPKWVVNKATTKLAPKVM---KKLHKAALK 202 (222)
T ss_pred EecCCCCCcCHHHHHHHHHHHhHHHH---HHHHHHHHH
Confidence 999999999964 4555555555444 355555554
No 14
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=2.2e-30 Score=256.29 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=160.2
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceE
Q 005831 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (675)
Q Consensus 172 s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~td 251 (675)
..++|++.+.++|+.||.+..+. ..+++||++|+|+..+++|++.+.+.. .|.+||++++++++||+||++|.
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~e------f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~ 93 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEE------FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCC 93 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCc------CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcE
Confidence 56799999999999999997643 467999999999999999999999877 79999999999999999999999
Q ss_pred EEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEEE
Q 005831 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHML 330 (675)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~VT~i~ 330 (675)
|+++.+.. .+...++|||||.++++.+..||. +++..|++|+..|| |||||++++|||++.|+. ++++|.+||++
T Consensus 94 I~~yvt~~-~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~l 169 (202)
T cd08902 94 VMRYTTAG-QLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYI 169 (202)
T ss_pred EEEEEccc-CCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEE
Confidence 99776643 345679999999999998877775 67799999999888 999999999999999995 45689999999
Q ss_pred eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 005831 331 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 331 ~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
++|+|||+|..+ .++.++..|++....||+.+
T Consensus 170 q~DLkG~LPqsi--Idq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 170 QTDLRGMLPQSA--VDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EecCCCCccHHH--HHHHhhHHHHHHHHHHHHhc
Confidence 999999999743 67889999999999999875
No 15
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=2.9e-30 Score=260.26 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=153.1
Q ss_pred CCCCCEEEE-eeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeeCCc
Q 005831 172 APSPWTIFG-CQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (675)
Q Consensus 172 s~~~W~lv~-~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf-~vL~d~d~~R~eWD~~~~~~~VVE~id~~ 249 (675)
..++|++.. .++|++||++..++ +. ++||+++++++++++|+ .++.|++ .+++|++++.++++|+++|++
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~------~~-k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD------IG-KVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC------CC-cEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCC
Confidence 456899995 58999999987763 33 89999999999999999 5555777 799999999999999999999
Q ss_pred eEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEE
Q 005831 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKH 328 (675)
Q Consensus 250 tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-~~~t~VT~ 328 (675)
++|+|+...+ |..|++++||||++|+|++. ++.++++..|++|+.+|+++|||||+...|||+|+|+++ +.+|+|||
T Consensus 95 ~~i~y~~~~p-~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~ 172 (209)
T cd08905 95 TLITHEVAAE-TAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTW 172 (209)
T ss_pred ceEEEEEecc-CCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEE
Confidence 9999985422 22234999999999999985 566778889999999999999999999999999999964 34899999
Q ss_pred EEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 005831 329 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (675)
Q Consensus 329 i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~~~ 366 (675)
++++|||||||.++ .+..++-.+++++.+||+.+..
T Consensus 173 ~~~~DpkG~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 173 LLSIDLKGWLPKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEeecCCCCCCHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999753 2233344566777899999863
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=1.5e-29 Score=252.03 Aligned_cols=182 Identities=26% Similarity=0.314 Sum_probs=156.6
Q ss_pred cCCCCCEEEEe-eCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHH-HHHHHHhCCCCccccccccceeEEEEeeCC
Q 005831 171 IAPSPWTIFGC-QNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEA-IFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (675)
Q Consensus 171 ~s~~~W~lv~~-~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~-Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~ 248 (675)
.+..+|++... ++|+.+|++..++. +.++.+|++++|++++++ +.+++.|++ .|++||+++.++++|+++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 16 ASEPGWVLSSENENGDEVRSILSPGR-----SPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred CCCCccEEccccCCcceEEEEccCCC-----CceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECC
Confidence 34568999997 89999999876531 357899999999999997 557777888 89999999999999999999
Q ss_pred ceEEEEEEEccCCCCC-CcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 005831 249 HTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVK 327 (675)
Q Consensus 249 ~tdIvY~~~~~~~~P~-pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT 327 (675)
+++|+|+.+ .+|| |+++||||++|+|+..++|.|+|+.+|+.|+.+|+.+|+|||++..|||+|+|++++ .|+||
T Consensus 90 ~~~i~~~~~---~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~vt 165 (206)
T smart00234 90 GTVIYHYVS---KFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSKVT 165 (206)
T ss_pred CCeEEEEEE---ecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeEEE
Confidence 999999988 4577 999999999999999888999999999999999999999999999999999999866 69999
Q ss_pred EEEeeeCCCCccc-ccccchhhHHHHHHHHHHHHHHHHH
Q 005831 328 HMLAIDWKCWRSY-LQPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 328 ~i~~vDpkGwip~-~~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
|+.++||+||+|. +++.+.+..+..++. .||+.+.
T Consensus 166 ~~~~~D~~G~iP~~lvn~~~~~~~~~~~~---~~~~~~~ 201 (206)
T smart00234 166 WVSHADLKGWLPHWLVRSLIKSGLAEFAK---TWVATLQ 201 (206)
T ss_pred EEEEEecCCCccceeehhhhhhhHHHHHH---HHHHHHH
Confidence 9999999999995 566666666665543 4555544
No 17
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=6.8e-30 Score=261.89 Aligned_cols=186 Identities=19% Similarity=0.250 Sum_probs=151.2
Q ss_pred ccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCc--eEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEE
Q 005831 166 VTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHP--AIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCV 242 (675)
Q Consensus 166 ~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~--~~KavgvV~-aspe~Vf~vL~d~d~~R~eWD~~~~~~~V 242 (675)
+..++.++ +|+++.+++||+||++..+++ ... .+||+++|+ +++++++++|+|.+ .|.+||.++.++++
T Consensus 19 ~~~~~~~~-~W~l~~~~~gikVy~r~~~~s------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~v 90 (235)
T cd08872 19 ALEDVGAD-GWQLFAEEGEMKVYRREVEED------GVVLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHV 90 (235)
T ss_pred HHccCCCC-CCEEEEeCCceEEEEEECCCC------CceeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEE
Confidence 34344444 899999999999999987652 223 699999998 99999999999999 89999999999999
Q ss_pred EEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCC-------CcEEEEEEecCCCCCCCCCCeEEEEEec-----
Q 005831 243 VEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD-------GTYVILYHSVFHKKCPRQKGSVRACLKS----- 310 (675)
Q Consensus 243 VE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~d-------GsyvI~~~SV~hp~~Pp~~G~VRa~i~~----- 310 (675)
||+++++++|+|+.+ .+|||+++||||++++|++.++ +.|+++..|++||.+|+++||||+....
T Consensus 91 ie~l~~~~~I~Y~~~---k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~ 167 (235)
T cd08872 91 VETLSQDTLIFHQTH---KRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQ 167 (235)
T ss_pred EEecCCCCEEEEEEc---cCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeee
Confidence 999999999999988 5799999999999999998654 5689999999999999999999999743
Q ss_pred -------eEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhc
Q 005831 311 -------GGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAK 367 (675)
Q Consensus 311 -------gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~~~ 367 (675)
|+|.++| ++ .+|+|||++++|||||+|.+ ++...+... -..|..|-.|+..+
T Consensus 168 ~~i~~~~g~~~~t~-~~-~~~~ity~~~~dPgG~iP~wvvn~~~k~~~---P~~l~~~~~~~~~~ 227 (235)
T cd08872 168 TFVSPPDGNQEITR-DN-ILCKITYVANVNPGGWAPASVLRAVYKREY---PKFLKRFTSYVQEK 227 (235)
T ss_pred eeeecCCCcccccC-CC-CeEEEEEEEEeCCCCCccHHHHHHHHHhhc---hHHHHHHHHHHHHh
Confidence 3344555 33 38999999999999999964 333333222 23455777777654
No 18
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.97 E-value=1.2e-29 Score=255.45 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=154.1
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeeCC-c
Q 005831 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-H 249 (675)
Q Consensus 172 s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~-~ 249 (675)
..++|+++.+++||+||++..++ +....||+++++ ++|+++++++++|.+ .|.+||.++.++++|++.++ +
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~ 91 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG------TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETG 91 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCC
Confidence 44579999999999999998774 456899999977 999999999999999 89999999999999999755 8
Q ss_pred eEEEEEEEccCCCCCCcCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC--CCCeeEE
Q 005831 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN--HGKKSVV 326 (675)
Q Consensus 250 tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~-dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~--~~~~t~V 326 (675)
++|+|+.+ .+|||+++||||+.|.+..+. +|.|+|+.+|+.||.+|+.+|+||+....|+|+|+|+. +.+.|.+
T Consensus 92 ~~i~y~~~---~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~ 168 (207)
T cd08911 92 SEIIYWEM---QWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEF 168 (207)
T ss_pred CEEEEEEE---ECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEE
Confidence 99999998 579999999999999987764 46789999999999999999999999999999999994 2347999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 005831 327 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 327 T~i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
+|+.+.|||||||.+ ++.+.+..+..+| .+|++-.
T Consensus 169 ~~~~~~dPgG~IP~~lvN~~~~~~~~~~l---~~l~~a~ 204 (207)
T cd08911 169 VLTYFDNPGVNIPSYITSWVAMSGMPDFL---ERLRNAA 204 (207)
T ss_pred EEEEEeCCCCccCHHHHHHHHHhhccHHH---HHHHHHH
Confidence 999999999999964 4445555555444 4666543
No 19
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.97 E-value=2.8e-29 Score=257.47 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=163.9
Q ss_pred CCCccccCcccCCcc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHH
Q 005831 148 SHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL 223 (675)
Q Consensus 148 ~~~~~~~~~~~~~~~----~~~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL 223 (675)
-..+++.|+..|+.+ |..++.-+.+.++|++..+++||+||++.. +..+.||++++|++|+++|+++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~--------s~~~~fK~e~~vd~s~e~v~~lL 100 (240)
T cd08913 29 EVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE--------DKFLSFKVEMVVHVDAAQAFLLL 100 (240)
T ss_pred cCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC--------CCccEEEEEEEEcCCHHHHHHHH
Confidence 456789999999955 588998899999999999999999999653 34689999999999999999999
Q ss_pred HhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEc-CCC-cEEEEEEecCCCCCCCCC
Q 005831 224 MSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG-TYVILYHSVFHKKCPRQK 301 (675)
Q Consensus 224 ~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~-~dG-syvI~~~SV~hp~~Pp~~ 301 (675)
.|++ .|++||.++.++++|+++|++.. +|+...+.| +||+++||||++++|++. ++| .|+|+.+|+.||++||++
T Consensus 101 ~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k 177 (240)
T cd08913 101 SDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP 177 (240)
T ss_pred hChh-hhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence 9999 89999999999999999998864 677764433 359999999999999775 334 599999999999999999
Q ss_pred CeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHH
Q 005831 302 GSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITI 351 (675)
Q Consensus 302 G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~-~~~~~~~~~~ 351 (675)
|||||....|||+|.|++++ +|+|||++++||| ++|.+ .+.+....|+
T Consensus 178 gyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~~~N~~~~~~p~ 226 (240)
T cd08913 178 EYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYISTDIAGLSSEF 226 (240)
T ss_pred CcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHHHhhhhhhccch
Confidence 99999999999999999765 7999999999996 99964 4445444444
No 20
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.96 E-value=2.2e-28 Score=246.37 Aligned_cols=177 Identities=16% Similarity=0.182 Sum_probs=150.1
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEeeCCce
Q 005831 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT 250 (675)
Q Consensus 172 s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~-aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~t 250 (675)
+..+|+++.+++||+||++..++ +..+.|||+++++ +++++++++|+|.+ .|++||.++.+ +++..++++
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~ 93 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGE 93 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCC
Confidence 45689999999999999997664 5568999999998 79999999999999 89999999987 678888899
Q ss_pred EEEEEEEccCCCCCCcCCceEEEEEEEEEc-CCC--cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 005831 251 DIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVK 327 (675)
Q Consensus 251 dIvY~~~~~~~~P~pvs~RDfV~lR~wr~~-~dG--syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT 327 (675)
+|+|+.+ .+|||+++||||++|.++.. .+| .++|+..|+.||.+|+++|+||+....|+|+|+|.+++ .|.++
T Consensus 94 ~i~y~~~---k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i~ 169 (207)
T cd08910 94 TVIYWEV---KYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKVF 169 (207)
T ss_pred EEEEEEE---EcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEEE
Confidence 9999998 56999999999999887643 344 36889999999999999999999999999999998654 79999
Q ss_pred EEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 005831 328 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 328 ~i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
|+.+.|||||||.| ++.+.+..+.. .+.+||+-.
T Consensus 170 ~~~~~DPgG~IP~wlvN~~~~~~~~~---~l~~l~ka~ 204 (207)
T cd08910 170 MYYFDNPGGMIPSWLINWAAKNGVPN---FLKDMQKAC 204 (207)
T ss_pred EEEEeCCCCcchHHHHHHHHHHhhHH---HHHHHHHHH
Confidence 99999999999964 44454555444 445676654
No 21
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=4.2e-28 Score=240.59 Aligned_cols=175 Identities=22% Similarity=0.290 Sum_probs=148.7
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeeCCceE
Q 005831 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (675)
Q Consensus 173 ~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf-~vL~d~d~~R~eWD~~~~~~~VVE~id~~td 251 (675)
..+|......+|+.|+.+..+. +...+++|+...|+++|.+|+ ++|. .|..||.++.+.++||+||+++|
T Consensus 26 ~kgW~~~~~~~~vev~~kk~~d-----~~~l~lwk~s~ei~~~p~~vl~rvL~----dR~~WD~~m~e~~~Ie~Ld~n~d 96 (205)
T cd08907 26 FKGWHSAPGPDNTELACKKVGD-----GHPLRLWKVSTEVEAPPSVVLQRVLR----ERHLWDEDLLHSQVIEALENNTE 96 (205)
T ss_pred cCCceeecCCCCcEEEEEeCCC-----CCceEEEEEEEEecCCCHHHHHHHhh----chhhhhHHHHhhhhheeecCCCE
Confidence 4689999999999998875432 145689999999988777665 4455 39999999999999999999999
Q ss_pred EEEEEEccCCCCCCcCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 005831 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (675)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wr~~-~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~ 330 (675)
|.||.+ .+|.|+++||||++|.|+.+ +.|.|+|+..||+|++.|+.+| |||..+.+||+|+|.+.+ +|+|||+.
T Consensus 97 I~yY~~---~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi~ 171 (205)
T cd08907 97 VYHYVT---DSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHIC 171 (205)
T ss_pred EEEEEe---cCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEEE
Confidence 999998 45789999999999999865 5678999999999999999999 999999999999999755 79999999
Q ss_pred eeeCCCCccccccc-chhhHHHHHHHHHHHHHHHHH
Q 005831 331 AIDWKCWRSYLQPS-SARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 331 ~vDpkGwip~~~~~-~~~~~~~~mL~~va~LRe~~~ 365 (675)
++||+||+|.|+++ ++.-++ ..+..||+.|.
T Consensus 172 rvD~rG~~P~Wynk~~g~~~a----~~l~~ir~sF~ 203 (205)
T cd08907 172 RADLRGRSPDWYNKVFGHLCA----MEVARIRDSFP 203 (205)
T ss_pred EeCCCCCCcHHHHHhHHHHHH----HHHHHHHhhcc
Confidence 99999999965544 443333 35678999885
No 22
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=6.3e-28 Score=241.96 Aligned_cols=172 Identities=23% Similarity=0.308 Sum_probs=145.6
Q ss_pred CCEEEEeeCCeEEEE-EeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEE
Q 005831 175 PWTIFGCQNGLRLFK-EGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (675)
Q Consensus 175 ~W~lv~~~nGIrVy~-r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIv 253 (675)
+|......|++.+.. +..++ ++.+.+|+++.++++|++|+..|++ .|.+||..+.++++|+++|++++|+
T Consensus 28 ~w~~~~~~~~~el~~~k~~~g------s~l~~~r~~~~i~a~~~~vl~~lld---~~~~Wd~~~~e~~vIe~ld~~~~I~ 98 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVSEG------PPLRLWRTTIEVPAAPEEILKRLLK---EQHLWDVDLLDSKVIEILDSQTEIY 98 (204)
T ss_pred CCcccCCCCcEEEEEeccCCC------CCcEEEEEEEEeCCCHHHHHHHHHh---hHHHHHHHhhheEeeEecCCCceEE
Confidence 555555566666633 34342 5679999999999999999999985 3899999999999999999999999
Q ss_pred EEEEccCCCCCCcCCceEEEEEEEEE-cCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 005831 254 HKQLYSDWLPWGMKRRDLLLRRYWRR-EDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 332 (675)
Q Consensus 254 Y~~~~~~~~P~pvs~RDfV~lR~wr~-~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~v 332 (675)
|+.+ ..|||+++||||++|.|+. ..+|.++|...|++|+.+|+. +|||....|||+|+|++++ +|+|||++++
T Consensus 99 Yy~~---~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~ 172 (204)
T cd08908 99 QYVQ---NSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCRI 172 (204)
T ss_pred EEEc---cCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEEe
Confidence 9998 4689999999999999986 468889999999999999976 6999999999999999765 8999999999
Q ss_pred eCCCCccc-ccccchhhHHHHHHHHHHHHHHHHH
Q 005831 333 DWKCWRSY-LQPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 333 DpkGwip~-~~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
||||++|. +.+.+++-++. .+..||+.|.
T Consensus 173 DPgG~iP~W~~N~~g~~~~~----~~~~~r~sf~ 202 (204)
T cd08908 173 DLRGHMPEWYTKSFGHLCAA----EVVKIRDSFS 202 (204)
T ss_pred CCCCCCcHHHHhhHHHHHHH----HHHHHHhhcc
Confidence 99999995 55556655444 4568999885
No 23
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.96 E-value=1.8e-27 Score=239.78 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=153.8
Q ss_pred CCCEEEEeeCC----eEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeeCC
Q 005831 174 SPWTIFGCQNG----LRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (675)
Q Consensus 174 ~~W~lv~~~nG----IrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~ 248 (675)
.+|+++.+++| |+||++..++ +....||+++++ ++|+++|+++|+|.+ .|++||.++.++++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~ 94 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG------TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEK 94 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC------CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCC
Confidence 68999999999 9999998764 456899999999 679999999999998 89999999999999998554
Q ss_pred -ceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEE
Q 005831 249 -HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVV 326 (675)
Q Consensus 249 -~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~V 326 (675)
+++|+|+.+ .+|||+++||||+.|.++.+.+|.++|+.+|+.||.+|+. |+||+....|+|+|+|+. ++.+|.+
T Consensus 95 ~~~~i~y~~~---~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~ 170 (209)
T cd08870 95 SGTEIVRWVK---KFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSAC 170 (209)
T ss_pred CCcEEEEEEE---ECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceEE
Confidence 589999998 6799999999999998887668899999999999999999 999999999999999993 2347999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 005831 327 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 327 T~i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
+|+++.||+|+||.| ++.+....+. ..+.+||+.+.
T Consensus 171 ~~~~~~dp~G~IP~wlvN~~~~~~~~---~~l~~l~~a~~ 207 (209)
T cd08870 171 EVTYFHNPDGGIPRELAKLAVKRGMP---GFLKKLENALR 207 (209)
T ss_pred EEEEEECCCCCCCHHHHHHHHHhhhH---HHHHHHHHHHh
Confidence 999999999999965 4444444443 45567777653
No 24
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=8.2e-27 Score=231.88 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=151.2
Q ss_pred cCCCCCEEEEeeCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCc
Q 005831 171 IAPSPWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (675)
Q Consensus 171 ~s~~~W~lv~~~nGIrVy~r-~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~ 249 (675)
....+|++..++++..++.. ..++++ ...+.+|++++|++++++++..|++.. . +||+.+.++++|++++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~~ 88 (206)
T PF01852_consen 16 EDEDGWKLYKDKKNGDVYYKKVSPSDS----CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDED 88 (206)
T ss_dssp HTCTTCEEEEEETTTCEEEEEEECSSS----TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEETT
T ss_pred cCCCCCeEeEccCCCeEEEEEeCcccc----ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCCC
Confidence 45689999995555444333 333211 257899999999999999999999644 2 999999999999999999
Q ss_pred eEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCC-CCCeEEEEEeceEEEEEeCCCCCeeEEEE
Q 005831 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPR-QKGSVRACLKSGGYVITPMNHGKKSVVKH 328 (675)
Q Consensus 250 tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp-~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~ 328 (675)
++|+|+.++.. +|+|+++||||++|++++..+|.|+|+.+|++||.+|+ .+|+|||++..+||+|+|++++ .|+|||
T Consensus 89 ~~i~~~~~~~~-~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt~ 166 (206)
T PF01852_consen 89 TDIVYFVMKSP-WPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVTY 166 (206)
T ss_dssp EEEEEEEEE-C-TTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEEE
T ss_pred CeEEEEEeccc-CCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEEE
Confidence 99999998542 23399999999999999988999999999999999999 9999999999999999999866 699999
Q ss_pred EEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhcc
Q 005831 329 MLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAKQ 368 (675)
Q Consensus 329 i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~~~~ 368 (675)
+.++||+||+|.+ .+.+... .+.+.+..||+.++...
T Consensus 167 ~~~~D~~G~iP~~~~n~~~~~---~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 167 VSQVDPKGWIPSWLVNMVVKS---QPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEESSSSSHHHHHHHHHHH---HHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCChHHHHHHHHHH---hHHHHHHHHHHHHHHhc
Confidence 9999999999964 3333333 34456678998887653
No 25
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.95 E-value=9.2e-27 Score=226.83 Aligned_cols=167 Identities=32% Similarity=0.516 Sum_probs=149.4
Q ss_pred CCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEE
Q 005831 174 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (675)
Q Consensus 174 ~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIv 253 (675)
.+|+++.+++|++||++..+. +....+|+++++++|+++|+++|.+.+ .|++||+.+.++++|++++++..|+
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~ 87 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED------SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDII 87 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC------CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEE
Confidence 489999999999999998764 356899999999999999999999988 7999999999999999999999999
Q ss_pred EEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 005831 254 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 333 (675)
Q Consensus 254 Y~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vD 333 (675)
|+.+ ..|||+++||||+++++....+|.++++.+|++|+.+|+.+++|||.+..|||+|+|+++ +.|+|||++++|
T Consensus 88 ~~~~---~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~-~~~~vt~~~~~D 163 (193)
T cd00177 88 YYKT---KPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP-GKTKVTYVLQVD 163 (193)
T ss_pred EEEe---eCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC-CCEEEEEEEeeC
Confidence 9998 458899999999999999877789999999999999999999999999999999999964 489999999999
Q ss_pred CCCCcccc-cccchhhHHH
Q 005831 334 WKCWRSYL-QPSSARSITI 351 (675)
Q Consensus 334 pkGwip~~-~~~~~~~~~~ 351 (675)
|+||+|.+ .+......+.
T Consensus 164 ~~g~iP~~~~~~~~~~~~~ 182 (193)
T cd00177 164 PKGSIPKSLVNSAAKKQLA 182 (193)
T ss_pred CCCCccHHHHHhhhhhccH
Confidence 99999953 3333333333
No 26
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.95 E-value=3e-26 Score=226.86 Aligned_cols=178 Identities=22% Similarity=0.324 Sum_probs=152.5
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceE
Q 005831 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (675)
Q Consensus 172 s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~td 251 (675)
...+|+++.+++|++||++..++ +....+|++++|+++|++|++++.|++ .|++||+.+.++++|++++++.+
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~ 87 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNER 87 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcE
Confidence 34569999999999999998664 345899999999999999999999999 79999999999999999998899
Q ss_pred EEEEEEccCCCCCCcCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 005831 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (675)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wr~~~-dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~ 330 (675)
++|..+ .+|||+++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....|+|.|+|++++ +|+|+|++
T Consensus 88 i~~~~~---~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~~~ 162 (195)
T cd08876 88 SVYTVI---DLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTYQA 162 (195)
T ss_pred EEEEEE---ecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEEEEEE
Confidence 999998 468899999999988777654 68899999999887 8999999999999999999999754 89999999
Q ss_pred eeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 005831 331 AIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 331 ~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
++||+||+|.+ ++...+..+. ..+++||+.+
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~---~~l~~l~~~~ 194 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPY---NTLENLRKQL 194 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 99999999964 3333344333 4456777654
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=1.8e-25 Score=225.89 Aligned_cols=187 Identities=21% Similarity=0.308 Sum_probs=160.4
Q ss_pred cccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEE
Q 005831 165 QVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVE 244 (675)
Q Consensus 165 ~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE 244 (675)
.+..+..+..+|++..+++||+||.+..++ +....+|++|+|+++++.++++|.|.+ .+++|++.+.++++|+
T Consensus 13 ~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~ 85 (215)
T cd08877 13 ENLKDLDESDGWTLQKESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVK 85 (215)
T ss_pred HHHhcccCCCCcEEeccCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEe
Confidence 345556667899999999999999997664 346899999999999999999999998 8999999999999999
Q ss_pred eeCCceEEEEEEEccCCCCCCcCCceEEEEEEEE-Ec-CCCcEEEEEEecCCCC---------CCCCC-CeEEEEEeceE
Q 005831 245 HLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWR-RE-DDGTYVILYHSVFHKK---------CPRQK-GSVRACLKSGG 312 (675)
Q Consensus 245 ~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr-~~-~dGsyvI~~~SV~hp~---------~Pp~~-G~VRa~i~~gG 312 (675)
+++..+.|+|+.+ .+|||+++||+|+..... .. ++|.++|+..|+.|+. +|+.+ |+||+....||
T Consensus 86 ~~~~~~~v~y~~~---~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~ 162 (215)
T cd08877 86 QLGRADKVCYLRV---DLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYG 162 (215)
T ss_pred ecCCceEEEEEEE---eCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecce
Confidence 9999999999998 579999999999863332 23 7899999999999875 79999 99999999999
Q ss_pred EEEEeCCCCCeeEEEEEEeeeCCCC-ccc-ccccchhhHHHHHHHHHHHHHHHHH
Q 005831 313 YVITPMNHGKKSVVKHMLAIDWKCW-RSY-LQPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 313 wvI~Pl~~~~~t~VT~i~~vDpkGw-ip~-~~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
|+|+|++.+ +|.|+|++++||+|+ +|. +++.+.+.++..++. +||+.++
T Consensus 163 ~~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~---~l~k~~~ 213 (215)
T cd08877 163 FVITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFE---KIQKAAK 213 (215)
T ss_pred EEEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 999999765 799999999999998 995 555667777776654 6666554
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.88 E-value=8.9e-22 Score=196.19 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=151.6
Q ss_pred ccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeeC-
Q 005831 170 VIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD- 247 (675)
Q Consensus 170 v~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id- 247 (675)
..+..+|+++.++.++.||....+. +....||+.++. ++||+.|+++++|.+ +|++||.++.+.++|+...
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~------~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~ 97 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK------TGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPV 97 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC------CCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCC
Confidence 4567899999999999999943332 236889999988 799999999999999 9999999999999999864
Q ss_pred CceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEE-eC--CCCCee
Q 005831 248 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVIT-PM--NHGKKS 324 (675)
Q Consensus 248 ~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~-Pl--~~~~~t 324 (675)
-+++|+|+.. .+|.|+++||||++|.|...++..|+|+..|+.||..|+++++||+....+||+|+ |. ++++.|
T Consensus 98 tg~~vv~w~~---kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~ 174 (219)
T KOG2761|consen 98 TGTEVVYWVK---KFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGC 174 (219)
T ss_pred CCceEEEEEE---eCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCcc
Confidence 5789999998 57999999999999888875557799999999999999999999999999999999 54 345579
Q ss_pred EEEEEEeeeCCCCcccccccc--hhhHHHHHHHHHHHHHHHHH
Q 005831 325 VVKHMLAIDWKCWRSYLQPSS--ARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 325 ~VT~i~~vDpkGwip~~~~~~--~~~~~~~mL~~va~LRe~~~ 365 (675)
.+.|..+.||+|-||.++.+. ..-++..+-..-.+++.|..
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~ 217 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQE 217 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhh
Confidence 999999999999999654332 22233322222345665554
No 29
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.55 E-value=2.3e-14 Score=129.32 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=75.7
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecce---EEecCCcccccccceEEEEEEeC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI---RVTDNGRESIHRKVFFIFTLYNT 88 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~---~V~d~G~~~~~~~~~y~f~i~~~ 88 (675)
+||||.|.|... ..-|++|||||+++.|+||| +|.+ ..|.|.+.|+.++ .|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~--~k~wkkRwFvL~~~~L~Yyk-~~~d--~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKH--TEGFKKRWFTLDDRRLMYFK-DPLD--AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCC--CCCceeEEEEEeCCEEEEEC-CCCC--cCcCcEEEeeccccceeEeccCCccccccccceEEEEeC
Confidence 699999999853 22389999999999999999 4434 6899999987654 46432111112334469999875
Q ss_pred CCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 89 SNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 89 ~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
+|++.|.|.|.+|+..||+||+.|+.
T Consensus 76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999975
No 30
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.51 E-value=1.8e-14 Score=155.71 Aligned_cols=170 Identities=19% Similarity=0.322 Sum_probs=139.0
Q ss_pred cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEE-EEecCcHHHHHHHHHhCCCCccccccccceeE
Q 005831 163 MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAV-GVVDGTSEAIFQTLMSLGASRSVWDFCFYRGC 241 (675)
Q Consensus 163 ~~~~~~dv~s~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~Kav-gvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~ 241 (675)
+.+.+.++...+.|+++...+.+++|++..+..++ ..-.+||. +++.+++.++++++.+.+ .|.+|+.+++.+.
T Consensus 392 ~~~~~~~~g~d~nwqlFaeegemkmy~re~eeng~----~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~ 466 (611)
T KOG1739|consen 392 MTYSLQDVGGDANWQLFAEEGEMKMYRREVEENGI----VLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFH 466 (611)
T ss_pred hhhhcccccccchhhhhcccCCccccceeeccCCc----ccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhce
Confidence 46677788888889999999999999998775443 23456666 466789999999999999 8999999999999
Q ss_pred EEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEc----CCC--cEEEEEEecCCCCCCCCCCeEEEEEece---E
Q 005831 242 VVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----DDG--TYVILYHSVFHKKCPRQKGSVRACLKSG---G 312 (675)
Q Consensus 242 VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~----~dG--syvI~~~SV~hp~~Pp~~G~VRa~i~~g---G 312 (675)
|||+|.+++-|+|++.+. .||.++||-.++.+.|+- ++| .|++|..|++|.+.|-...+||+.+... .
T Consensus 467 vve~is~d~~~~~qthkr---vwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micq 543 (611)
T KOG1739|consen 467 VVETISDDAIIIYQTHKR---VWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQ 543 (611)
T ss_pred eeeeecCCeEEEEecccc---cCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeee
Confidence 999999999999999854 489999999999888873 333 5999999999999999999999977542 1
Q ss_pred EEEEe------CC-CCCeeEEEEEEeeeCCCCccc
Q 005831 313 YVITP------MN-HGKKSVVKHMLAIDWKCWRSY 340 (675)
Q Consensus 313 wvI~P------l~-~~~~t~VT~i~~vDpkGwip~ 340 (675)
-.+.| ++ +.-.|.+||+.+++||||.|.
T Consensus 544 t~v~~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 544 TLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred cccCCcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 12222 21 124799999999999999993
No 31
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.49 E-value=1.5e-13 Score=121.67 Aligned_cols=95 Identities=18% Similarity=0.335 Sum_probs=74.9
Q ss_pred cceeeEEEeeec-ccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCC
Q 005831 11 RMEGWLHLIRSN-RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 11 ~~eGwl~~~g~~-~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
|+||||++++.. ++....|++|||||+|+.|.|||.+. + ..|.+.+.|.++ +|+.. .+. +..|+|.|..
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~-~--~~~~~~I~L~~~-~v~~~-~~~---~k~~~F~I~~-- 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ-D--EKAEGLIFLSGF-TIESA-KEV---KKKYAFKVCH-- 70 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC-C--CccceEEEccCC-EEEEc-hhc---CCceEEEECC--
Confidence 689999999853 22455799999999999999999543 3 678999999987 55531 121 2458999974
Q ss_pred CCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 90 ~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
++.+.+.|+|.|.||+.+||+||+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34589999999999999999999876
No 32
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.47 E-value=1.3e-12 Score=133.02 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=112.4
Q ss_pred CCceEEEEEEecCcHHHHHHHHHhCCCCccc-cccccceeEEEEeeCCc--------eEEEEEEEccCCCCCCcCCceEE
Q 005831 202 DHPAIMAVGVVDGTSEAIFQTLMSLGASRSV-WDFCFYRGCVVEHLDGH--------TDIIHKQLYSDWLPWGMKRRDLL 272 (675)
Q Consensus 202 ~~~~~KavgvV~aspe~Vf~vL~d~d~~R~e-WD~~~~~~~VVE~id~~--------tdIvY~~~~~~~~P~pvs~RDfV 272 (675)
..-+=|+.|+|...+..|.++|||.+ ...+ ++..+..+++++.|+.. ..++|.+++.. -..+.+|||+
T Consensus 58 ~~eASR~~glV~m~~~~lVe~lmD~~-kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~p--SpLVp~Re~~ 134 (229)
T cd08875 58 TTEASRACGLVMMNAIKLVEILMDVN-KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVP--SPLVPTREFY 134 (229)
T ss_pred eEEEEeeeEEEecCHHHHHHHHhChh-hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccC--cccccCCeEE
Confidence 34577999999999999999999765 2222 34488888999888543 68899998431 1358999999
Q ss_pred EEEEEEEcCCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCc
Q 005831 273 LRRYWRREDDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWR 338 (675)
Q Consensus 273 ~lR~wr~~~dGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwi 338 (675)
++||..+.+||+++|+-.|+++. ..|+.++++|++..+|||+|+|.++| .|+|||+-|+|..-|.
T Consensus 135 fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 135 FLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCCc
Confidence 99999999999999999999987 67888999999999999999999877 7999999999988873
No 33
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.44 E-value=6.7e-13 Score=114.92 Aligned_cols=91 Identities=25% Similarity=0.446 Sum_probs=73.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~ 91 (675)
|||||++++... ..|++|||||+++.|.||+.+.... ..|.+.+.|++|....+.+ .-++|.|..+ +
T Consensus 1 ~~G~L~k~~~~~---~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01246 1 VEGWLLKWTNYL---KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDS-------DDKCFTIDTG--G 67 (91)
T ss_pred CeEEEEEecccC---CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCC-------CCcEEEEEcC--C
Confidence 799999998643 4599999999999999999665322 4899999999885434422 1478998764 4
Q ss_pred CCeEEEeccCHHHHHHHHHHHHHH
Q 005831 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 92 ~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
++.+.|.|.|.+|+.+|+.||+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 589999999999999999999876
No 34
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.40 E-value=1.5e-12 Score=115.79 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=71.8
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
..|||.|.|.+..... |++|||||++ +.|+||| .+.+ ..|+|++-|.+++.+.+... .-+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~-WkkRWFvL~~~~~~L~Yyk-~~~d--~~p~G~I~L~~~~~~~~~~~------~~~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRG-RRSRWFALDDRTCYLYYYK-DSQD--AKPLGRVDLSGAAFTYDPRE------EKGRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcC-ceeEEEEEcCCCcEEEEEC-CCCc--ccccceEECCccEEEcCCCC------CCCEEEEEc--
Confidence 4699999998655444 8999999984 5899999 4433 78999999998755544221 135788864
Q ss_pred CCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 90 ~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.++.+.|.|.|.+|+..||+||+.|
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999987
No 35
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.40 E-value=1.7e-12 Score=116.42 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=74.3
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEec-CCcccccccceEEEEEEeC
Q 005831 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNT 88 (675)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d-~G~~~~~~~~~y~f~i~~~ 88 (675)
|.++|||.+.|... .-|++|||||+++.|+|||.+. +..|++.+-|.. |.|+. .+.+...+ ..++|.|..
T Consensus 2 v~k~G~L~Kkg~~~---k~WkkRwfvL~~~~L~yyk~~~---~~~~~~~I~L~~-~~v~~~~~~~~~~~-~~~~F~I~t- 72 (100)
T cd01233 2 VSKKGYLNFPEETN---SGWTRRFVVVRRPYLHIYRSDK---DPVERGVINLST-ARVEHSEDQAAMVK-GPNTFAVCT- 72 (100)
T ss_pred cceeEEEEeeCCCC---CCcEEEEEEEECCEEEEEccCC---CccEeeEEEecc-cEEEEccchhhhcC-CCcEEEEEC-
Confidence 45899999999864 2399999999999999999654 378999999984 45542 22221112 247899954
Q ss_pred CCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 89 ~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
+++++.|.|.|.+|+..||+||..+.
T Consensus 73 --~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 --KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred --CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 57999999999999999999998764
No 36
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.37 E-value=3.2e-12 Score=115.97 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=77.6
Q ss_pred ceeeEEEeeec--ccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccc---cccceEEEEEE
Q 005831 12 MEGWLHLIRSN--RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI---HRKVFFIFTLY 86 (675)
Q Consensus 12 ~eGwl~~~g~~--~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~---~~~~~y~f~i~ 86 (675)
+||||+|++.+ ++|+.-|++|||||++..|.|||.++.. ...|.|++-|.++..|+.-..+.. +...-|.|.|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 69999999744 4677679999999999999999965532 357999999998877775333221 22335889997
Q ss_pred eCCCCCCeEEEeccCHHHHHHHHHHHHH
Q 005831 87 NTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 87 ~~~~~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
.. ++++.|.|.|.+|+..|++||++
T Consensus 81 t~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 81 HD---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred eC---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 73 57899999999999999999985
No 37
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.36 E-value=7.1e-12 Score=126.81 Aligned_cols=131 Identities=11% Similarity=-0.011 Sum_probs=97.1
Q ss_pred Cccccccccc--eeEEEEeeCCce----EEEEEEEccCCCCCCcCCceEEEEEE-EEEcC-CCcEEEEEEecCCCCCC-C
Q 005831 229 SRSVWDFCFY--RGCVVEHLDGHT----DIIHKQLYSDWLPWGMKRRDLLLRRY-WRRED-DGTYVILYHSVFHKKCP-R 299 (675)
Q Consensus 229 ~R~eWD~~~~--~~~VVE~id~~t----dIvY~~~~~~~~P~pvs~RDfV~lR~-wr~~~-dGsyvI~~~SV~hp~~P-p 299 (675)
.-.+|.+.+. ++++|+..++.. .|+|+.+ .+|||+++|||+.+.. ..... ...++++..++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~---~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTY---KFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEE---ECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 4579999999 899999887665 7888888 6799999999999977 33322 15688889999999999 9
Q ss_pred CCCeEEEEEece-EEEEEeCCCCCeeEEEEEE--eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 005831 300 QKGSVRACLKSG-GYVITPMNHGKKSVVKHML--AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 300 ~~G~VRa~i~~g-GwvI~Pl~~~~~t~VT~i~--~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
.+|||||.-..+ .|.+.|.+.+..+.|+|++ +.||||+||.|+.+. .+|-.+..-+..+-+|+
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~--~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKL--TIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhc--cCchHHHHhHHHHHHHh
Confidence 999999997666 6777787422356777777 999999999654322 33333333444444443
No 38
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.36 E-value=4.5e-12 Score=114.24 Aligned_cols=91 Identities=22% Similarity=0.455 Sum_probs=74.0
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecc------eeeeeccCCCCC--CCCCceeEEeecceEEecCCcccccccceE
Q 005831 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (675)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y 81 (675)
+.++|||.+.+ -||+|||||++. .|.|||..+... ...|.|++-|++|..|...-. .-| -|
T Consensus 2 v~k~GyL~K~K-------~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~---~~ 70 (101)
T cd01257 2 VRKSGYLRKQK-------SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH---RH 70 (101)
T ss_pred ccEEEEEeEec-------CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc---Ce
Confidence 67999999963 389999999999 899999776432 268999999999998875321 212 28
Q ss_pred EEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHH
Q 005831 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 82 ~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
+|.|+. .++++-|+|.|.+|++.|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 999987 448999999999999999999964
No 39
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.35 E-value=8e-12 Score=116.31 Aligned_cols=97 Identities=22% Similarity=0.447 Sum_probs=75.4
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~ 90 (675)
++||||+|.|... .-|++|||||+++.|.|||. +. +..|.+++.|+++ .|+.... ...-+.|.|+...+
T Consensus 1 ~k~G~L~K~~~~~---~~WkkRwfvL~~~~L~yyk~-~~--~~~~~g~I~L~~~-~v~~~~~----~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLLKQGGRV---KTWKRRWFILTDNCLYYFEY-TT--DKEPRGIIPLENV-SIREVED----PSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEEEeCCCC---CCeEeEEEEEECCEEEEEcC-CC--CCCceEEEECCCc-EEEEccc----CCCCeeEEEECCcc
Confidence 5899999988643 44999999999999999994 33 3789999999966 4543211 12347899888664
Q ss_pred ------------------CCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 91 ------------------HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 91 ------------------~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
..+.+.|.|.|.+|+..|+.||+.++..
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2367789999999999999999999774
No 40
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.33 E-value=9.2e-12 Score=110.70 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=72.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecc--eeeeeccCCCCCCCCCceeEEeecceEEecCC----cccccccceEEEEE
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDH--FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESIHRKVFFIFTL 85 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~--~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G----~~~~~~~~~y~f~i 85 (675)
.||||.|.|... .-|++|||||.++ .|.||+.. . +..|.+++-|..++.|.... ... |....+.|.|
T Consensus 1 ~~G~L~K~g~~~---k~WkkRwFvL~~~~~~L~Yy~~~-~--~~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~i 73 (101)
T cd01235 1 CEGYLYKRGALL---KGWKPRWFVLDPDKHQLRYYDDF-E--DTAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFDL 73 (101)
T ss_pred CeEEEEEcCCCC---CCccceEEEEECCCCEEEEecCC-C--CCccceEEEcceeEEEeecCCCCCCCC-CCCCceEEEE
Confidence 489999999743 3389999999954 99999944 3 37899999999888776421 122 2223466777
Q ss_pred EeCCCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 86 ~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
. .+.+.+.|.|.|.||+..|++||+.+|
T Consensus 74 ~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 74 K---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred E---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 4 357899999999999999999999864
No 41
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.33 E-value=9.5e-12 Score=110.00 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=70.7
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~ 91 (675)
++|||.|.|.---| |++|||||++..|.|||.++.. ...|.|++-|.+|+-+.+.. .-..|.|... .
T Consensus 1 ~~G~L~K~~~~~k~---Wk~RwFvL~~g~L~Yyk~~~~~-~~~~~G~I~L~~~~i~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01247 1 TNGVLSKWTNYING---WQDRYFVLKEGNLSYYKSEAEK-SHGCRGSIFLKKAIIAAHEF-------DENRFDISVN--E 67 (91)
T ss_pred CceEEEEeccccCC---CceEEEEEECCEEEEEecCccC-cCCCcEEEECcccEEEcCCC-------CCCEEEEEeC--C
Confidence 58999999974333 8899999999999999976643 35689999998886555422 1256777543 3
Q ss_pred CCeEEEeccCHHHHHHHHHHHHH
Q 005831 92 NDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 92 ~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
++++.|.|.|.+|...|++||+.
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 59999999999999999999975
No 42
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.30 E-value=1.7e-11 Score=106.58 Aligned_cols=100 Identities=28% Similarity=0.466 Sum_probs=80.3
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCccc--ccccceEEEEEEeC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--IHRKVFFIFTLYNT 88 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~--~~~~~~y~f~i~~~ 88 (675)
.+||||++++ .+..-|++|||||.++.|.||+.........|.+.+-|+++ .|.+..... .....-+.|.|..+
T Consensus 2 ~~~G~L~~~~---~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS---SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE---SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC---CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999999 33344889999999999999996664334899999999988 776543221 23356688999887
Q ss_pred CCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 89 ~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
.. ..+.|.|.|.+|+..|+++|+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 54 899999999999999999999985
No 43
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.5e-11 Score=110.64 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=76.1
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCc-eeEEeecceEEecCCcccccccceEEEEEEeCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~ 90 (675)
.||||-+.|.+=...--||+|||||+||.|+|||+++. ..|. +++.|..|..|.......-+....|.|.|..+
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~---~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp-- 76 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK---DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA-- 76 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCc---cCCCCceEEcccceEEeeccccccccccCcEEEEEcC--
Confidence 48999998885334555999999999999999996653 2455 78888888877754322111122589999654
Q ss_pred CCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 91 ~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
++++.|.|.|.+|++.|+++|..|+
T Consensus 77 -~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 77 -DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred -CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 5999999999999999999999883
No 44
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.26 E-value=2.5e-11 Score=110.30 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=73.8
Q ss_pred eeeEEEeeeccc-ccccceeeEEEEecce-------eeeeccCCCCCCCCCceeEEeecceEEecCCcc--cccccceEE
Q 005831 13 EGWLHLIRSNRI-GLQYSRKRYFLLEDHF-------LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--SIHRKVFFI 82 (675)
Q Consensus 13 eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~-------l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~--~~~~~~~y~ 82 (675)
||||.|.|.... +..-|++|||||+++. |.|||... +..|.+++-|+.|..|++ |.. .-+...-|+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~---~~k~~g~I~L~~~~~v~~-~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR---KFKLEFVIDLESCSQVDP-GLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC---CCccceEEECCccEEEcc-cccccccCcccceE
Confidence 899999988543 5567999999999876 59999433 378999999998755543 321 111233478
Q ss_pred EEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
|.|.- ..|.+.|+|.|.||+..||+||.+.
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 88883 6799999999999999999999753
No 45
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.24 E-value=4.4e-11 Score=104.11 Aligned_cols=94 Identities=24% Similarity=0.434 Sum_probs=70.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~ 91 (675)
|||||++++... ...|++|||||+++.|.||+..+.. ...|.+++.|..| .|....... ..-+.|.|..+.
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~---~~~~~f~i~~~~-- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDY-DNAHVKEIDLRRC-TVRHNGKQP---DRRFCFEVISPT-- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCccc-ccccceEEeccce-EEecCcccc---CCceEEEEEcCC--
Confidence 799999987543 4569999999999999999965532 2567777777655 454322111 234899998653
Q ss_pred CCeEEEeccCHHHHHHHHHHHHHH
Q 005831 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 92 ~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+.+.|.|.|.+|+.+|+.||+.|
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 46
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=3.9e-11 Score=108.68 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=74.0
Q ss_pred ceeeEEEeeecc------cccccceeeEEEEe-cceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEE
Q 005831 12 MEGWLHLIRSNR------IGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT 84 (675)
Q Consensus 12 ~eGwl~~~g~~~------~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~ 84 (675)
+.|||++.+..+ ...-=||+|||||+ +.+|+||+.++.+ ..|.|++-|..|..|.+. .+. .++ -+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~-~~~-~~~-~~~f~ 75 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDA-EAR-TGQ-KFSIC 75 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeec-ccc-cCC-ccEEE
Confidence 579999998874 45566999999997 6899999866433 689999999888888853 211 122 47888
Q ss_pred EEeCCCCCCeEEEeccCHHHHHHHHHHHH
Q 005831 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (675)
Q Consensus 85 i~~~~~~~~~~~~~a~s~ee~~~W~~a~~ 113 (675)
|-.. +|++-|.|.|.||++.|+++|.
T Consensus 76 I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 76 ILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 8544 6999999999999999999986
No 47
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.24 E-value=4e-11 Score=108.05 Aligned_cols=94 Identities=27% Similarity=0.437 Sum_probs=68.3
Q ss_pred CcceeeEEEeeecccccccceeeEEEEe-cceeeeeccCCCCC--CCCCceeEEeecceEEe-cCCcccccccceEEEEE
Q 005831 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTL 85 (675)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~-d~G~~~~~~~~~y~f~i 85 (675)
+.+||||.|.|.. ..-|++|||||+ +..|.|||.+|.+. +..||+...|.+|..+. +. ...+.|.|
T Consensus 1 v~k~G~L~K~g~~---~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~-------~~~~~F~i 70 (102)
T cd01241 1 VVKEGWLHKRGEY---IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTER-------PRPNTFII 70 (102)
T ss_pred CcEEEEEEeecCC---CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccC-------CCcceEEE
Confidence 4589999999974 334899999999 77788888788653 26788888887764332 22 23377888
Q ss_pred EeCC---CCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 86 YNTS---NHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 86 ~~~~---~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
-... ...+ +|.|.|.||++.||+||+.+
T Consensus 71 ~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 71 RCLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EeccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 6322 1223 56799999999999999876
No 48
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.21 E-value=1.8e-10 Score=98.20 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=80.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~ 90 (675)
.++|||+++... +.+-|++|||+|.++.|.||+.++......|.+.+.|+++ +|........ ...-+.|.|..+..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 589999998875 5667999999999999999997776444788999999988 6665433221 23448899987643
Q ss_pred CCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 91 ~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
..+.|.|.|.+|+..|+.+|+.|+
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999885
No 49
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.11 E-value=3.7e-10 Score=105.06 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=74.8
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCC-CCCCCceeEEeecceE--EecCCcccccccceEEEEEE
Q 005831 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIR--VTDNGRESIHRKVFFIFTLY 86 (675)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vi~~~~~--V~d~G~~~~~~~~~y~f~i~ 86 (675)
++|.|||...-... |..-||+|||||+|++|.||+ +|.+ ....|++++-|.+|+. |++--|+.-.++.-|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 57899999866554 778899999999999999999 5544 3378999999999874 33233344334444555444
Q ss_pred eCCC---------------CCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 87 NTSN---------------HNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 87 ~~~~---------------~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.... ..-.+-|+|.|.||...|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 3221 1123678999999999999999764
No 50
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.07 E-value=6.6e-10 Score=103.30 Aligned_cols=97 Identities=24% Similarity=0.422 Sum_probs=77.7
Q ss_pred ceeeEEEeeecccc--cc-------------cceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcc---
Q 005831 12 MEGWLHLIRSNRIG--LQ-------------YSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--- 73 (675)
Q Consensus 12 ~eGwl~~~g~~~~g--~~-------------~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~--- 73 (675)
+||||++++--+.- +. -|++|||||++..|.||+ +|.+ ..|.+.+++|....|+..+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~--~~~~~vil~D~~f~v~~~~~~~~~ 77 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSS--AQILDVILFDVDFKVNGGGKEDIS 77 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCC--CceeeEEEEcCCccEEeCCccccc
Confidence 58999988654432 11 369999999999999999 5544 799999999999999976654
Q ss_pred ------cccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 74 ------SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 74 ------~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
-.++ .-+.|+|-| .+|+++|.|.|.+++..|++||+.|
T Consensus 78 ~~~~~~~~~~-~~~~~~i~t---~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 78 LAVELKDITG-LRHGLKITN---SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccccccccCC-CceEEEEEc---CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1123 358999955 5799999999999999999999876
No 51
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.04 E-value=5e-10 Score=100.46 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=67.0
Q ss_pred eeeEEEeeecccccccceeeEEEEec----ceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeC
Q 005831 13 EGWLHLIRSNRIGLQYSRKRYFLLED----HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (675)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g----~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~ 88 (675)
-|||.|.|.+ . .--|++|||+|.+ +.|+||+..+ +..|++.+.+..+ .|... -+..- +..|.|.|++.
T Consensus 2 ~G~l~K~g~~-~-~K~wK~rwF~l~~~~s~~~l~yf~~~~---~~~p~gli~l~~~-~V~~v-~ds~~-~r~~cFel~~~ 73 (98)
T cd01245 2 KGNLLKRTKS-V-TKLWKTLYFALILDGSRSHESLLSSPK---KTKPIGLIDLSDA-YLYPV-HDSLF-GRPNCFQIVER 73 (98)
T ss_pred CCccccCCCC-c-ccccceeEEEEecCCCCceEEEEcCCC---CCCccceeecccc-EEEEc-ccccc-CCCeEEEEecC
Confidence 4999998863 1 3348999999998 9999999555 3789985555544 55541 01111 22499999998
Q ss_pred CCCCCeEEEeccCHHHHHHHHHHHHH
Q 005831 89 SNHNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 89 ~~~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
..| ..+.|+|.+ ||++.||++|+.
T Consensus 74 ~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 ALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 654 677787877 999999999975
No 52
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.98 E-value=2.6e-09 Score=94.50 Aligned_cols=97 Identities=24% Similarity=0.376 Sum_probs=72.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecce-EEecCCcccccccceEEEEEEeCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI-RVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~-~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
..-|||-.....-+.- =.++|||||..+.|+|||..- +++|-..+.+|+.+ |.-+.|- .+++ |.|.+||+.
T Consensus 2 irkgwl~~~n~~~m~g-gsK~~WFVLt~~~L~wykd~e---eKE~kyilpLdnLk~Rdve~gf--~sk~--~~FeLfnpd 73 (110)
T cd01256 2 IRKGWLSISNVGIMKG-GSKDYWFVLTSESLSWYKDDE---EKEKKYMLPLDGLKLRDIEGGF--MSRN--HKFALFYPD 73 (110)
T ss_pred eeeeeEEeeccceecC-CCcceEEEEecceeeeecccc---cccccceeeccccEEEeecccc--cCCC--cEEEEEcCc
Confidence 3569998765543322 268999999999999999333 48898888898764 3223332 2222 999999865
Q ss_pred -----CCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 90 -----NHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 90 -----~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.+.++++|+|.|+||++.|+-+|-.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 34589999999999999999999887
No 53
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.4e-09 Score=111.71 Aligned_cols=98 Identities=30% Similarity=0.529 Sum_probs=77.1
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecc-e-EEecCCcccccccceEEEEEE
Q 005831 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC-I-RVTDNGRESIHRKVFFIFTLY 86 (675)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~-~-~V~d~G~~~~~~~~~y~f~i~ 86 (675)
.++.||||.+.|.| |---|++|||||..|+|+||+ --. |++|-|.+.++.- + .|+|- +..|.|.||
T Consensus 259 npdREGWLlKlgg~--rvktWKrRWFiLtdNCLYYFe-~tT--DKEPrGIIpLeNlsir~VedP-------~kP~cfEly 326 (395)
T KOG0930|consen 259 NPDREGWLLKLGGN--RVKTWKRRWFILTDNCLYYFE-YTT--DKEPRGIIPLENLSIREVEDP-------KKPNCFELY 326 (395)
T ss_pred CccccceeeeecCC--cccchhheeEEeecceeeeee-ecc--CCCCCcceeccccceeeccCC-------CCCCeEEEe
Confidence 46799999999997 344599999999999999998 333 3788877777532 1 44542 467999999
Q ss_pred eCCCCCC-------------------eEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 87 NTSNHND-------------------QLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 87 ~~~~~~~-------------------~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
+.+++.. .|++.|-|+||...||++++.++.+
T Consensus 327 ~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 327 IPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred cCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 9887443 3678999999999999999999763
No 54
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.95 E-value=4.6e-09 Score=94.29 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=65.7
Q ss_pred ccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCCCCeEEEeccCH
Q 005831 23 RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSP 102 (675)
Q Consensus 23 ~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ 102 (675)
+.+. -|++|||||.++.|.|||.+. ..|++++-|..-.-|+..+..... .-|+|.|... ++++-|-|.|.
T Consensus 16 ~~~~-n~KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~ 85 (98)
T cd01244 16 KKVL-HFKKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAP 85 (98)
T ss_pred ccCc-CCceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCH
Confidence 4565 489999999999999999433 678999999766667665544322 2489999775 47999999999
Q ss_pred HHHHHHHHHHHHH
Q 005831 103 EEAAKWIHSLQEA 115 (675)
Q Consensus 103 ee~~~W~~a~~~a 115 (675)
+|+..|++||+.+
T Consensus 86 ~E~~~Wi~al~k~ 98 (98)
T cd01244 86 VEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 55
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.91 E-value=2.7e-09 Score=97.93 Aligned_cols=95 Identities=33% Similarity=0.475 Sum_probs=54.2
Q ss_pred ceeeEEEeeecccccccceeeEEEEe-cceeeeeccCCCCC------CCCCceeEEeecceE------Ee---c-CCccc
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK------NEDPVRSAIIDSCIR------VT---D-NGRES 74 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~------~~~Pi~~~vi~~~~~------V~---d-~G~~~ 74 (675)
||||||+.+.. +|.. ||+|||||+ ++.|.|||. |.+. .+.+.+.+.-+...+ +. + +-.+.
T Consensus 1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999998876 6777 899999999 999999995 3221 012222221111111 11 0 11233
Q ss_pred ccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 75 IHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 75 ~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+|.+++++ ...++++.|.|.+.+|...|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 44444444 357899999999999999999999987
No 56
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.91 E-value=1.1e-08 Score=91.96 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=66.7
Q ss_pred ceeeEEEeee-----cccccccceeeEEEEecceeeeeccCCCCCCCCCce--eEEeecceEEe-cCCcccccccceEEE
Q 005831 12 MEGWLHLIRS-----NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVR--SAIIDSCIRVT-DNGRESIHRKVFFIF 83 (675)
Q Consensus 12 ~eGwl~~~g~-----~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~--~~vi~~~~~V~-d~G~~~~~~~~~y~f 83 (675)
|||+|.++-. ++.+...|++|||||+|+.|.|||...... +.+.+ .+-|+++ .|+ +.... +.-++|
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~-~i~~~~~~~----k~~~~F 74 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGA-QCEVASDYT----KKKHVF 74 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCC-EEEecCCcc----cCceEE
Confidence 6899997654 455677899999999999999999543221 12212 2334444 332 21111 234899
Q ss_pred EEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+|... +.+.+.|.|.|.+++..|+.||+.|
T Consensus 75 ~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 75 RLRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 99864 6799999999999999999999753
No 57
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.91 E-value=1.1e-08 Score=92.07 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=73.7
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC--CCCCceeEEeecceEEecCCcccccccceEEEEEEeC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~ 88 (675)
.+||||.+.+....+ |+.|||+|-...|-|++.++... .-.+...+-|+++ .|++.. +....+.|.|..+
T Consensus 3 ikeG~L~K~~~~~~~---~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~~~----~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTTEK---TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCEGD----NLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCCCC---ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEeCC----CCCcCceEEEecC
Confidence 489999999886544 67999999888999999665321 1244556667764 676531 2345688998655
Q ss_pred CCCCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 89 SNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 89 ~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
. +.+.+.|.|+||...||.||+.|+++
T Consensus 75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 Q---RCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 3 99999999999999999999999863
No 58
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.86 E-value=1.6e-08 Score=85.99 Aligned_cols=97 Identities=25% Similarity=0.310 Sum_probs=72.7
Q ss_pred ceeeEEEeeeccc-ccccceeeEEEEecceeeeeccCCCCCCCCCc-eeEEeecceEEecCCcccccccceEEEEEEeCC
Q 005831 12 MEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 12 ~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
.+|||.+++.... +...|++|||+|.++.|.||+.++... +. +..-+.+.. |....... +.-++|.|.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~l~~~~-v~~~~~~~---~~~~~F~i~~~~ 73 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKE---IKPGSIPLSEIS-VEEDPDGS---DDPNCFAIVTKD 73 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCc---CCCCEEEccceE-EEECCCCC---CCCceEEEECCC
Confidence 4799999988754 456689999999999999999666332 22 345555443 55432221 235899998875
Q ss_pred CCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 90 ~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.+.+.+.|.|.|.+|+..|++||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 56899999999999999999999875
No 59
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.85 E-value=7.9e-09 Score=93.45 Aligned_cols=91 Identities=18% Similarity=0.308 Sum_probs=72.1
Q ss_pred ecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCC-CCCCeEEEec
Q 005831 21 SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS-NHNDQLKLGA 99 (675)
Q Consensus 21 ~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~-~~~~~~~~~a 99 (675)
..++..-=+++|||+|+|+.|+|||++...+ ..|+..+-+-||....|.-.. . .-|.+++.... ++.+.+.|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~lnl~gcev~~dv~~~---~-~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLNLKGCEVTPDVNVA---Q-QKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEecCceEEccccccc---c-cceEEEEecCCccCCeEEEEEC
Confidence 3445555589999999999999999877654 799999999999555563111 1 23899998764 6668999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 005831 100 SSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 100 ~s~ee~~~W~~a~~~a~ 116 (675)
.|.++-++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999993
No 60
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.81 E-value=2.1e-08 Score=84.53 Aligned_cols=95 Identities=24% Similarity=0.332 Sum_probs=74.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecC-CcccccccceEEEEEEeCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN-GRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~-G~~~~~~~~~y~f~i~~~~~ 90 (675)
++|||+++.... .+-|++|||+|.++.|.+|+..+......|.+.+.|+++ .|... +.+ +..+.|.|.....
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~----~~~~~f~i~~~~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGA-EVEESPDDS----GRKNCFEIRTPDG 73 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCC-EEEECCCcC----CCCcEEEEecCCC
Confidence 589999988654 456889999999999999996654334688888889874 44432 222 2458888887643
Q ss_pred CCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 91 ~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+.+.|.|.|.+|+.+|+.+|+.|
T Consensus 74 --~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 --RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred --cEEEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 61
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.78 E-value=6.1e-08 Score=90.52 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=96.0
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEE
Q 005831 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (675)
Q Consensus 207 KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyv 286 (675)
+....|+||+++|+++|.|.+ ..++|.+.+.++++++.-+ +...++... .++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDE-DELEAELTV-----GFGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCC-CEEEEEEEE-----eeccccEEEEEEEEec--CCCE--
Confidence 456789999999999999999 7999999999999999755 445556554 1345688888654443 2333
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 005831 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
|...++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|.+ .+.+....+..+| .+|++.+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l---~~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMV---DAFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence 35555532 22345789999999755 7999999999999998854 4445555555554 46665554
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.59 E-value=2.3e-06 Score=79.92 Aligned_cols=141 Identities=10% Similarity=0.089 Sum_probs=84.2
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEE
Q 005831 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (675)
Q Consensus 207 KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyv 286 (675)
+++..|+|||++|+++|.|.+ ..++|.+.+.++++++.-++ ...+++......+.+.. +.-+.++.... .+....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGN-RVVLEQTGKQGILFFKF--EARVVLELRER-EEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCC-EEEEEEeeeEEEEeeee--eEEEEEEEEEe-cCCCce
Confidence 678899999999999999999 79999999999999987433 33344431100000000 01111111111 110111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 005831 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~-~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
+.+..+.. -+ ....|.|.++|.+++.+|+|+|.++++|++.+|.. .+.+.... +...+++||+.++
T Consensus 77 i~~~~~~g--------~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~---~~~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEG--------DF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQD---LPTNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCC--------ch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 22222211 01 34578999999976347999999999999999863 33333333 3345568887765
No 63
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.52 E-value=7.7e-07 Score=80.11 Aligned_cols=95 Identities=22% Similarity=0.326 Sum_probs=68.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCC-CCCceeEEeecceEEecCCcccccccceEEEEEEeCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-EDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~-~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
.+||||.|.+++ +. ++|||+|=...|=|+.+.+.++. -.+.+.+-+++. .|++.--+ ....+.|.||.+
T Consensus 3 ikEG~L~K~~~k--~~---~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~-~V~~~~~~---~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKK--GL---QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGM-LTEESEHE---WGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCC--CC---ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCce-EEeeccCC---cCCceeEEEEcC-
Confidence 379999998874 33 36666666666666665664321 246677777866 67753111 245689999954
Q ss_pred CCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 90 ~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
.+.++|.|.|++|...||++|+.||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999986
No 64
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.51 E-value=1.1e-06 Score=81.46 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=73.4
Q ss_pred ceeeEEEeee-------cccccccceeeEEEEecceeeeeccCCCCC---C-CCCceeEEeecce-EEecCCcccccccc
Q 005831 12 MEGWLHLIRS-------NRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---N-EDPVRSAIIDSCI-RVTDNGRESIHRKV 79 (675)
Q Consensus 12 ~eGwl~~~g~-------~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~-~~Pi~~~vi~~~~-~V~d~G~~~~~~~~ 79 (675)
+||+|+++-. ...|..+|++||-||+|+.|..||.+.... . ..+-..+-|.+++ .+.-. ..+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~d-----y~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASD-----YSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecc-----ccCC
Confidence 6899998742 234678899999999999999999664310 0 1223455677775 55421 2245
Q ss_pred eEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 80 FFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 80 ~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
-+||+|-.. ..+.+-|-|.+.||+.+|+.+|..|+.
T Consensus 77 ~~VF~L~~~--~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTA--DWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 588988774 678899999999999999999999876
No 65
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.45 E-value=5.5e-07 Score=79.38 Aligned_cols=84 Identities=31% Similarity=0.485 Sum_probs=58.1
Q ss_pred eeEEEeeecccccccceeeEEEE--ecceeeeeccCCCC--CCCCCceeEEeecceEEecCCcccccccceEEEEEEeCC
Q 005831 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 14 Gwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~yk~~p~~--~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
|||.|+++++ +|=|++||||| +.-.|.||+..... .+..||+.++|.-+ ...+ .+-+ +
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~----~~~~------~I~i----d-- 62 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN----KKSR------RIDI----D-- 62 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec----CCCC------EEEE----E--
Confidence 8999987764 34478999999 99999999944321 23566666666432 1112 1111 1
Q ss_pred CCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 90 ~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.+...+.|=|.|.+|...|+.||+.|
T Consensus 63 sg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 63 SGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 23456777799999999999999987
No 66
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.37 E-value=1.1e-05 Score=80.41 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=91.0
Q ss_pred cCcHHHHHHHHHhC-CCCccccccccceeEEEEee----------CCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcC
Q 005831 213 DGTSEAIFQTLMSL-GASRSVWDFCFYRGCVVEHL----------DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 281 (675)
Q Consensus 213 ~aspe~Vf~vL~d~-d~~R~eWD~~~~~~~VVE~i----------d~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~ 281 (675)
.++-+++...|.+- .++-+++.+.+...+.|+.. ++...|++..+ .+|+|+++|||+.+-......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~---kfp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSY---KFPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEe---ECCCCCCCcEEEEEEEEeccC
Confidence 67778887777642 11457889999999999988 45556666666 578999999999997665533
Q ss_pred ---------CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC------CCCCeeEEEEEEeeeCCCCccccc
Q 005831 282 ---------DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM------NHGKKSVVKHMLAIDWKCWRSYLQ 342 (675)
Q Consensus 282 ---------dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl------~~~~~t~VT~i~~vDpkGwip~~~ 342 (675)
..+++|+...++|+.+|+.+|+|||.-.. -=.|+-+ +....-.=++.+..|+||+||.|+
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~S-VE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYES-VERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEEE-EEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 24699999999999999999999997643 2234433 122234444445569999999764
No 67
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.29 E-value=1.6e-05 Score=73.23 Aligned_cols=134 Identities=12% Similarity=0.151 Sum_probs=85.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCc-eEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH-TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~-tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGs 284 (675)
+.....|+|||++|+++|.|.+ ..++|.+.+.++++++.-++. ....+..+. ..++.. +++.... .....
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~--~~~~~- 74 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYALEYT--WDGAG- 74 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEEEEE--EcCCC-
Confidence 5667889999999999999999 799999999999998654432 234454431 112322 4442222 11222
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccc-ccchhhHHHHHHHHHHHHHHH
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQ-PSSARSITIRMLGRVAALREL 363 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~-~~~~~~~~~~mL~~va~LRe~ 363 (675)
.|.+..+... +.....+.|.++|.++ .|+|+|.++.+++|++|.+. +.+.+.++. +.+++||++
T Consensus 75 -~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 139 (140)
T cd07819 75 -SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLD---EALKGLKKR 139 (140)
T ss_pred -cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHH---HHHHhHhhh
Confidence 2444444321 2334457899999975 59999999999999998643 233333333 344567665
No 68
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.12 E-value=5e-05 Score=70.30 Aligned_cols=140 Identities=8% Similarity=-0.109 Sum_probs=85.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcE
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsy 285 (675)
++++..+++||++|+++|.|.+ ...+|.+.+...++++ ++...++.+.+ . ++...|.-...+....+++..+
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~~---~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKIG---PNEYEATVKLK---V-GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhccccC---CCeEEEEEEEE---E-ccEEEEEEEEEEEEecCCCcEE
Confidence 6778899999999999999999 7999999988866653 44444555542 1 3444444333333333333444
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH-HHHHHHHHHH
Q 005831 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML-GRVAALRELF 364 (675)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL-~~va~LRe~~ 364 (675)
.+....... .+.....+.|.|+|.+ + .|+|+|..+++++|.+..+..........+++ ..+.+||+.+
T Consensus 75 ~~~~~~~~~---------~~~~~~~~~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGKGG---------AGFVKGTARVTLEPDG-G-GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEcCC---------CceEEEEEEEEEEecC-C-cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444332211 1222445799999984 3 59999999999999763333333333333333 3445566543
No 69
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.97 E-value=0.00015 Score=67.46 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=80.1
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEE--EEEEcCCCcE
Q 005831 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRR--YWRREDDGTY 285 (675)
Q Consensus 208 avgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR--~wr~~~dGsy 285 (675)
...+|++|+++||++|.|++ ..++|.+. ...++++. ++....++.. .+..++..+.. ....+.++..
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE
Confidence 35689999999999999999 68899998 77777765 3444344421 22223333321 1112222322
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 005831 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
|.+..+.- ++ +.....|.|.++|.+++ +|+|+|.+..++++.+|-........+...+-..+++||++++
T Consensus 72 -i~~~~~~~------~~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 72 -IVFRQEEP------PP--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred -EEEEEeeC------CC--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 33333321 01 12234679999999754 6999999999999987721111111121123344667777654
No 70
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.81 E-value=3.6e-05 Score=69.14 Aligned_cols=91 Identities=22% Similarity=0.371 Sum_probs=66.2
Q ss_pred ceeeEEEeeecccccccceeeEEEEecce-----eeeeccCCCCCCCCCceeEEeecceEEecCCccccc----------
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHF-----LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIH---------- 76 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~-----l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~---------- 76 (675)
++|||++.|.+.. -=|++|||||.|-- +-.|+.+. .+|-..+.|||. +|.- .+...
T Consensus 4 ~sGyL~k~Gg~~~--KkWKKRwFvL~qvsQYtfamcsy~ekk----s~P~e~~qldGy-TvDy--~~~~~~~~~~~~~~~ 74 (117)
T cd01234 4 HCGYLYAIGKNVW--KKWKKRFFVLVQVSQYTFAMCSYREKK----AEPTEFIQLDGY-TVDY--MPESDPDPNSELSLQ 74 (117)
T ss_pred eeEEEEeccchhh--hhhheeEEEEEchhHHHHHHHhhhhhc----CCchhheeecce-EEec--cCCCCCCcccccccc
Confidence 8999999998433 34899999999642 33455555 567778889998 5652 22222
Q ss_pred ccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 77 RKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 77 ~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
|+.+| +|.-...+.++||+.+..|---|++|+=.|
T Consensus 75 gg~~f----f~avkegd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 75 GGRHF----FNAVKEGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred cchhh----hheeccCcEEEEeccchHHHHHHHHHHHHH
Confidence 33322 344467899999999999999999999998
No 71
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.80 E-value=0.00044 Score=63.47 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=76.3
Q ss_pred ecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEe
Q 005831 212 VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHS 291 (675)
Q Consensus 212 V~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~S 291 (675)
|+||+++|++++.|.+ ..++|.+.+.++++|+.-+++..+ .... ......+.|+....... ... |....
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~--~~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEV-----KFGGIKRSWTSRVTEDP--PER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEE-----CTTTTCEEEEEEEEEEC--TTT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEE-----ecCCEEEEEEEEEEEEE--eee--eeeee
Confidence 6899999999999999 799999999999999986664333 3333 12344466655444333 222 33332
Q ss_pred cCCCCCCCCCCeEEEEEeceEEEEEeCCC---CCeeEEEEEEeeeCCCCccc
Q 005831 292 VFHKKCPRQKGSVRACLKSGGYVITPMNH---GKKSVVKHMLAIDWKCWRSY 340 (675)
Q Consensus 292 V~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~---~~~t~VT~i~~vDpkGwip~ 340 (675)
+. |- .....|.|.++|.++ +..|.|++.+.++|++++|.
T Consensus 70 ~~--------g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~ 111 (130)
T PF03364_consen 70 IS--------GP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPG 111 (130)
T ss_dssp SE--------TT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHH
T ss_pred cC--------CC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHH
Confidence 21 21 235578999999986 67899999999999999985
No 72
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.77 E-value=0.00016 Score=67.15 Aligned_cols=99 Identities=22% Similarity=0.271 Sum_probs=60.6
Q ss_pred ceeeEEEeee-----ccc--ccccceeeEEEEecceeeeeccCC--CC---------CCCCCceeEEeecceEEecCCcc
Q 005831 12 MEGWLHLIRS-----NRI--GLQYSRKRYFLLEDHFLKSFKSVP--HS---------KNEDPVRSAIIDSCIRVTDNGRE 73 (675)
Q Consensus 12 ~eGwl~~~g~-----~~~--g~~~~~~Ryfvl~g~~l~~yk~~p--~~---------~~~~Pi~~~vi~~~~~V~d~G~~ 73 (675)
+||||+++-. .+. +..-|+.=|.||+|..|..||... .. ....|+.++-|.+++--...+
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~d-- 79 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASD-- 79 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETT--
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcc--
Confidence 6999999632 223 555699999999999999999632 11 113567778887764333222
Q ss_pred cccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 74 SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 74 ~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
+-+.-+||+|- .....++-|-|.|.+||..|+.+|..++
T Consensus 80 --Y~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 80 --YTKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp --BTTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred --cccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 12355788886 3468899999999999999999998875
No 73
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.65 E-value=0.0019 Score=59.50 Aligned_cols=135 Identities=9% Similarity=-0.039 Sum_probs=82.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcE
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsy 285 (675)
+.....|+||+++|++++.|.+ ..++|.+.+..++++.. ... .+.. ..|+ ...+++.... ... ..+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~---~~~~---~~~~-g~~~~~~~~v-~~~-~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRS---HWKA---KGPA-GLSVEWDAEI-TEQ-VPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--Cce---EEEE---ecCC-CCcEEEEEEE-ecc-CCCCE
Confidence 4567789999999999999999 79999999988877642 112 2222 1233 4455665432 222 23332
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-ccccchhhHHHH-HHHHHHHHHHH
Q 005831 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQPSSARSITIR-MLGRVAALREL 363 (675)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~-~~~~~~~~~~~~-mL~~va~LRe~ 363 (675)
|.......+. ...+.|.++|.+++ +|+|+|.++.++.+.++. +...+...+..+ +-..+.+||++
T Consensus 70 -i~~~~~~~~~-----------~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGAD-----------PNAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCCC-----------CcceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444432211 12467789998753 799999999999987764 222122222232 33455667666
Q ss_pred HH
Q 005831 364 FR 365 (675)
Q Consensus 364 ~~ 365 (675)
++
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 53
No 74
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.61 E-value=7.4e-05 Score=79.63 Aligned_cols=99 Identities=28% Similarity=0.456 Sum_probs=66.7
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEe--cceeeeeccCCCCCC--CCCceeEEeecc-eEEecCCcccccccceEEE
Q 005831 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHSKN--EDPVRSAIIDSC-IRVTDNGRESIHRKVFFIF 83 (675)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~--g~~l~~yk~~p~~~~--~~Pi~~~vi~~~-~~V~d~G~~~~~~~~~y~f 83 (675)
.+.+||||.|+|+.-.. ||.|||+|. |.++- |+.+|.+.+ ..|+---.|-.| +|-.|+-|-. ++-+=
T Consensus 14 ~vvkEgWlhKrGE~Ikn---WRpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFiiR 85 (516)
T KOG0690|consen 14 DVVKEGWLHKRGEHIKN---WRPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFIIR 85 (516)
T ss_pred hhHHhhhHhhcchhhhc---ccceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEEE
Confidence 45599999999997444 999999995 66665 566887643 588877777444 4555543311 22222
Q ss_pred EEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
++-...--. -+|.+.|+++-..|++|++..+.
T Consensus 86 cLQWTTVIE--RTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 86 CLQWTTVIE--RTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeee--eeeecCCHHHHHHHHHHHHHHhh
Confidence 332222111 26889999999999999998764
No 75
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.60 E-value=0.0028 Score=60.78 Aligned_cols=137 Identities=11% Similarity=0.100 Sum_probs=82.8
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEE--E-EcCCCc
Q 005831 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYW--R-REDDGT 284 (675)
Q Consensus 208 avgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~w--r-~~~dGs 284 (675)
-..+|++||++||+++.|++ ..++|.+.+..+++++. ++....+-... +.+ .. .++ ..| + ..+...
T Consensus 5 ~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i---~~~--~~--g~~--~~w~s~~~~~~~~ 73 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTM---HPD--AN--GTV--WSWVSERTLDPVN 73 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEE---Eec--cC--CEE--EEEEEEEEecCCC
Confidence 35689999999999999999 79999999999999985 44444443332 111 11 122 222 2 223334
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
..|.+..+ +. +|- ....+.|.++|++++ |+|++......++-.|.........+-..+-..+++||+.+
T Consensus 74 ~~i~~~~~--~~-~p~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~a 142 (146)
T cd08860 74 RTVRARRV--ET-GPF------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKI 142 (146)
T ss_pred cEEEEEEe--cC-CCc------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHh
Confidence 44555422 22 221 134679999999754 99999999987642332111112222222334567888877
Q ss_pred Hh
Q 005831 365 RA 366 (675)
Q Consensus 365 ~~ 366 (675)
++
T Consensus 143 E~ 144 (146)
T cd08860 143 EA 144 (146)
T ss_pred hh
Confidence 65
No 76
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.58 E-value=0.0025 Score=58.25 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=80.2
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCc
Q 005831 205 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (675)
Q Consensus 205 ~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGs 284 (675)
.++.+..|++|+++|+++|.|.+ ...+|.+.+...++++.-++--.+....+ +.. +.+. .+.... ++..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~-----~~g---~~~~-~~i~~~-~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTL-----KDG---GTVR-ERLLAL-DDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEe-----CCC---CEEE-EEehhc-CccC
Confidence 36778899999999999999998 68899999888887764220111222222 111 1221 111111 2221
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL~~va~LRe~~ 364 (675)
-.|.+..+.- ..| .....+.|.++|++++ +|+|+|.++.+++|.++.. .....+--.+-..+++|++++
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDE--LARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCCC-ccEEEEEEEEecCCCcchH--HHHHHHHHHHHHHHHHHHHhh
Confidence 2333333321 011 1233578999999764 6999999999999875531 111222222335566787765
No 77
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.53 E-value=0.00026 Score=64.75 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=72.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeec-ceEEecCCcccccccceEEEEEEeCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~-~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
+.|||||.+..-+.+ |++|||||++.=|+|.-+-...+.+.-..-+.+++ ++=..-+|++.+..+.-|.|+|-...
T Consensus 1 e~~g~LylK~~gkKs---WKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYLKADGKKS---WKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEEccCCCcc---ceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 369999997654444 99999999999998876443322233334444433 34334467999999999999994433
Q ss_pred CC---CCeE-EEeccCHHHHHHHHHHHHHHH
Q 005831 90 NH---NDQL-KLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 90 ~~---~~~~-~~~a~s~ee~~~W~~a~~~a~ 116 (675)
.+ ++-+ .|.|++.+....|+-||+-|.
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 22 3455 567888888899999999884
No 78
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.45 E-value=0.0012 Score=61.11 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=75.4
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC---CCCCceeEEe-ecceEEecCC----cccccccceE
Q 005831 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---NEDPVRSAII-DSCIRVTDNG----RESIHRKVFF 81 (675)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~~Pi~~~vi-~~~~~V~d~G----~~~~~~~~~y 81 (675)
..|||||-.-..+++.+. |.++|.||.+.-|+.|....... ..+|.-++-+ |+-+-|.--. ...-.....|
T Consensus 2 t~~EGwvkvP~~~~~krG-W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKG-WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccC-ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 369999987766665554 88999999999999999555331 1345544555 6666664222 1223346789
Q ss_pred EEEEEe----CCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 82 IFTLYN----TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 82 ~f~i~~----~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+|+|-. .......+-|-|.|..|-.+|..||++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 999955 4455678889999999999999999975
No 79
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.44 E-value=0.0016 Score=60.94 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=68.5
Q ss_pred eeeEEEeeecc--cccccceeeEEEEec--ceeeeeccCCCCC--CCCCceeEEeecceEEecCCcccc--ccc-ceEEE
Q 005831 13 EGWLHLIRSNR--IGLQYSRKRYFLLED--HFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESI--HRK-VFFIF 83 (675)
Q Consensus 13 eGwl~~~g~~~--~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~~~~--~~~-~~y~f 83 (675)
-.||||+.++. .+..=.|+|||-|.. ..|.....+|... ...=.+++.|+.=..|.|.-.... +.. --|+|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 35999998876 112347899999999 6777777777532 123456677776667766522110 011 12344
Q ss_pred EEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
.|. ...|.++|.|.|.|+++-|+.||+..++
T Consensus 92 ~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 92 IIV---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEE---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 444 4578999999999999999999997754
No 80
>PRK10724 hypothetical protein; Provisional
Probab=97.42 E-value=0.0039 Score=60.79 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=80.8
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCC
Q 005831 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD 282 (675)
Q Consensus 203 ~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~d 282 (675)
.+.++.+.+|++|++++|+++.|++ ..++|-+.+.+++++++-++.. +..... ... .+ ..-|.....+. .+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~-~a~l~v---~~~-g~-~~~f~srv~~~--~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQM-TAAVDV---SKA-GI-SKTFTTRNQLT--SN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEE-EEEEEE---eeC-Cc-cEEEEEEEEec--CC
Confidence 4578888999999999999999999 7999999999999999865542 222222 111 12 33454444442 23
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 005831 283 GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 340 (675)
Q Consensus 283 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~ 340 (675)
+ .|....++.| . ....|.|.++|++++ .|+|++.++.+++-.++.
T Consensus 85 ~--~I~~~~~~Gp--------F--~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~ 129 (158)
T PRK10724 85 Q--SILMQLVDGP--------F--KKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIE 129 (158)
T ss_pred C--EEEEEecCCC--------h--hhccceEEEEECCCC-CEEEEEEEEEEEchHHHH
Confidence 3 3444555321 1 236789999999754 699999999998877764
No 81
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.24 E-value=0.037 Score=50.53 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=74.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcE
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsy 285 (675)
+..+..|+|||++||++|.|.. ...+|.+.+...+++.. +...+. ..+.. .+. .-+..+....++++..
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~~--~~~~~~-~~~~~---~g~----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLSG--GGPGTE-RTVRV---AGR----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEEE--CSTEEE-EEEEE---CSC----SEEEEEEEEEETTTTE
T ss_pred EEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEccc--ccccee-EEEEe---ccc----cceeEEEEEecCCCcE
Confidence 5567789999999999999998 68899999998887762 222221 22211 111 2233333333332433
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccccc-chhhHHHHHHHHHHHHHHHH
Q 005831 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS-SARSITIRMLGRVAALRELF 364 (675)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~-~~~~~~~~mL~~va~LRe~~ 364 (675)
+- ++.+ ..++. ...+.|.+.|.+++ |+|++..+.++ |+...+... +...+-..+-..+++|++.+
T Consensus 73 ~~-~~~~-------~~~~~---~~~~~~~~~~~~~g--t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 73 IT-WRFV-------PSGFT---NGTGRWRFEPVGDG--TRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EE-EEEE-------SSSSC---EEEEEEEEEEETTT--EEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE-EEEE-------eccee---EEEEEEEEEEcCCC--EEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 2222 12222 22567999998755 99999999997 333222111 11122222334556676655
No 82
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.21 E-value=0.0017 Score=59.76 Aligned_cols=95 Identities=15% Similarity=0.338 Sum_probs=61.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEec-CCcccccccceEEEEEEeCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d-~G~~~~~~~~~y~f~i~~~~~ 90 (675)
+||||.|+-..-.. ++++|++|+.|.+.||+..- +..|.|.+-|-.=+.|+. +|--...+...+.|.|--
T Consensus 2 kEGWmVHyT~~d~~---rKRhYWrLDsK~Itlf~~e~---~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T--- 72 (117)
T cd01239 2 KEGWMVHYTSSDNR---RKKHYWRLDSKAITLYQEES---GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT--- 72 (117)
T ss_pred ccceEEEEecCccc---eeeeEEEecCCeEEEEEcCC---CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe---
Confidence 69999998764433 67999999999999999654 355666666654556653 222122345667777632
Q ss_pred CCCeEEE--------------------eccCHHHHHHHHHHHHHH
Q 005831 91 HNDQLKL--------------------GASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 91 ~~~~~~~--------------------~a~s~ee~~~W~~a~~~a 115 (675)
.+..|-+ .....+-|..|-.|+++|
T Consensus 73 ~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 73 TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1122222 234567789999999886
No 83
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.02 E-value=0.0073 Score=55.36 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=69.6
Q ss_pred cceeeEEEeeeccc-ccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCC----cccccccceEEEEE
Q 005831 11 RMEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESIHRKVFFIFTL 85 (675)
Q Consensus 11 ~~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G----~~~~~~~~~y~f~i 85 (675)
.|||||-.-..++. +.+=|.++|.||.+.-|+.|.......+..|.-.+=+|.-+-|.--. ...-.....|+|+|
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred CcceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 38999987666444 22338899999999999999954433224455433333222211110 11222456799999
Q ss_pred EeCCCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 86 ~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
-.. +.++.+-|-|.|.+|-.+|..||..-|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 665 457899999999999999999998654
No 84
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.94 E-value=0.024 Score=51.56 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=72.3
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeC--CceEEEEEEEccCCCCCCcCCceEE-EEEEEEEcCCCc
Q 005831 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD--GHTDIIHKQLYSDWLPWGMKRRDLL-LRRYWRREDDGT 284 (675)
Q Consensus 208 avgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id--~~tdIvY~~~~~~~~P~pvs~RDfV-~lR~wr~~~dGs 284 (675)
....|+||+++|+++|.|.+ ...+|++.+..++++..-. ..+ .+..... ++ . ..+- ..+.... ..+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~-~~~~~~~---~~-g---~~~~~~~~v~~~-~p~~ 72 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGT-RYHQVRK---FL-G---RRIELTYEITEY-EPGR 72 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCcc-EEEEEEE---ec-C---ceEEEEEEEEEe-cCCc
Confidence 46789999999999999998 7899999887777664211 111 2222221 11 1 1111 1111111 2333
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHH-HHHHHHHHHHH
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIR-MLGRVAALREL 363 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~-mL~~va~LRe~ 363 (675)
+ +...... +.++ ..+-|.++|.++ .|+|++....+++++.... ..+....... +-..+++|++.
T Consensus 73 ~-~~~~~~~--------~~~~---~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~ 137 (140)
T cd08865 73 R-VVFRGSS--------GPFP---YEDTYTFEPVGG--GTRVRYTAELEPGGFARLL-DPLMAPAFRRRARAALENLKAL 137 (140)
T ss_pred E-EEEEecC--------CCcc---eEEEEEEEEcCC--ceEEEEEEEEccchhHHHH-HHHHHHHHhhhhHHHHHHHHHH
Confidence 2 2222221 1122 246899999865 5999999999997764321 1112222222 23445566666
Q ss_pred HH
Q 005831 364 FR 365 (675)
Q Consensus 364 ~~ 365 (675)
++
T Consensus 138 ~e 139 (140)
T cd08865 138 LE 139 (140)
T ss_pred hh
Confidence 54
No 85
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=96.93 E-value=0.00017 Score=81.40 Aligned_cols=89 Identities=27% Similarity=0.315 Sum_probs=73.0
Q ss_pred CCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-c
Q 005831 264 WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-Q 342 (675)
Q Consensus 264 ~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~-~ 342 (675)
.|...|||+++| |.++++..|++|...+...| |||.+..+.|.|+|.+.+ +++|+|++.+|++|..|.| .
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 467899999998 78999999999988888888 999999999999999877 7899999999999999954 4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH
Q 005831 343 PSSARSITIRMLGRVAALRELFR 365 (675)
Q Consensus 343 ~~~~~~~~~~mL~~va~LRe~~~ 365 (675)
..|...+.. .++.+|+.|.
T Consensus 645 k~fg~~c~~----~~~~~r~sf~ 663 (674)
T KOG2200|consen 645 KSFGHLCCL----EVARIRDSFH 663 (674)
T ss_pred ccccchhhh----hhcccchhhc
Confidence 455544433 3455666654
No 86
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.83 E-value=0.019 Score=52.78 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=68.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCc-eeEEeecceEEecC--Ccccc-cccceEEEEEEe
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDN--GRESI-HRKVFFIFTLYN 87 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vi~~~~~V~d~--G~~~~-~~~~~y~f~i~~ 87 (675)
++|=|.++..++.-. +.|+|.|=.++|=|=|++-...+.--. +.+.++.+ +|.|. |++.. +...-+.|.||+
T Consensus 4 ~~Gel~~~s~~~g~~---q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~-~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNKGWN---SSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRC-EVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEecccCCc---ccEEEEEecceEEEEecccccCCcEEEEEEEEcccE-EEEECCCCccccCCceeEEEEEEEE
Confidence 677777776543333 389999988888888854332222222 33445655 66654 65442 334668999999
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHH
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
. ..+..+.|.|.|+|+-.+||+||+.
T Consensus 80 ~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 E-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred c-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 9 4677899999999999999999975
No 87
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=96.79 E-value=0.00074 Score=79.65 Aligned_cols=92 Identities=23% Similarity=0.364 Sum_probs=69.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeccCCCCCCCCCceeEEeecc--eEEecCCcccccccceEEEEEEe
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSC--IRVTDNGRESIHRKVFFIFTLYN 87 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~Pi~~~vi~~~--~~V~d~G~~~~~~~~~y~f~i~~ 87 (675)
+||.|||+|.--.+ |+.|||||+. ..|+||+..- +..|- |+||-- --|+-.|.+++-.+.+|-++
T Consensus 1636 ~eG~LyKrGA~lK~---Wk~RwFVLd~~khqlrYYd~~e---dt~pk--G~IdLaevesv~~~~~k~vdekgffdlk--- 1704 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKL---WKPRWFVLDPDKHQLRYYDDFE---DTKPK--GCIDLAEVESVALIGPKTVDEKGFFDLK--- 1704 (1732)
T ss_pred cccchhhcchhhcc---cccceeEecCCccceeeecccc---ccccc--chhhhhhhhhhcccCccccCccceeeee---
Confidence 89999999996555 8999999975 6899999444 35664 333311 12334566787778877543
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
..++.|.|.|.|+-+|-+|++.++..+
T Consensus 1705 --tt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1705 --TTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred --hhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 566788999999999999999999764
No 88
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.76 E-value=0.037 Score=52.31 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=76.3
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcC-CC-c
Q 005831 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DG-T 284 (675)
Q Consensus 207 KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~-dG-s 284 (675)
..+..|++||+.|+++|.|++ ....|.+.+...++ +++++-..-.+.+. .+++ ..|-..-.+.... .+ .
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg~~~~~~---~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPGASLTEV---EGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCCceeccc---cCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcE
Confidence 356789999999999999988 67788776555443 45454333333311 1222 1221111111111 22 2
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHH-HHHHHHH
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGR-VAALREL 363 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL~~-va~LRe~ 363 (675)
+.+...... ....|.+++.+ -|.+.|.+ + .|+|+|..+++..|.++.+.........-++++. +++|++.
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~~---~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEATV---TLRLSPAG-G-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEEEec----CCCcceEEEEE---EEEEEecC-C-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 222222110 01112333333 58888843 3 6999999999999999866544444444444433 3446665
Q ss_pred HH
Q 005831 364 FR 365 (675)
Q Consensus 364 ~~ 365 (675)
++
T Consensus 144 ~e 145 (146)
T cd07823 144 LA 145 (146)
T ss_pred hc
Confidence 43
No 89
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.72 E-value=0.016 Score=52.85 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=63.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~ 90 (675)
.+||=|.++-+ .+.+ .|||+|=...|=|=+..+..+.-..-+.+-++++ .|++..- ...+...|.|.++
T Consensus 5 i~eG~L~K~~r--k~~~---~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~-~v~~~~d---~~~~~n~f~I~~~-- 73 (104)
T cd01218 5 VGEGVLTKMCR--KKPK---QRQFFLFNDILVYGNIVISKKKYNKQHILPLEGV-QVESIED---DGIERNGWIIKTP-- 73 (104)
T ss_pred EecCcEEEeec--CCCc---eEEEEEecCEEEEEEeecCCceeeEeeEEEccce-EEEecCC---cccccceEEEecC--
Confidence 47999998773 4544 7899999998888443222110001112233544 4443211 1134578999885
Q ss_pred CCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 91 HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 91 ~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
.+...+.|.|++|-..||++|++|+++
T Consensus 74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 -TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999985
No 90
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.63 E-value=0.082 Score=49.95 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=64.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe-eCCce-EEEEEEEccCCCCCCcCCceEEEE-EEEEEcCC
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH-LDGHT-DIIHKQLYSDWLPWGMKRRDLLLR-RYWRREDD 282 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~-id~~t-dIvY~~~~~~~~P~pvs~RDfV~l-R~wr~~~d 282 (675)
|-....|+|||++|++++.|.+ ..++|.+.+..+++++. -+... ....+.... ..+..+... +....+..
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 4456789999999999999999 79999999999888862 22211 112222111 111222221 11121222
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 005831 283 GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (675)
Q Consensus 283 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkG 336 (675)
..+.+ ... .+ .++ .+.|.|+|.++ .|+|++-..++.+|
T Consensus 76 ~~~~~--~~~-g~--------~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 76 SLLEV--RAS-GD--------LEG---VGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred cEEEE--EEE-Ee--------eeE---EEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 22322 211 11 122 36899999754 49999999999887
No 91
>PLN02866 phospholipase D
Probab=96.61 E-value=0.011 Score=71.89 Aligned_cols=101 Identities=20% Similarity=0.397 Sum_probs=72.7
Q ss_pred CcceeeEEEe------e-ecccc-c---------ccceeeEEEEecceeeeeccCCCCCCCCCceeEEeec---------
Q 005831 10 GRMEGWLHLI------R-SNRIG-L---------QYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS--------- 63 (675)
Q Consensus 10 ~~~eGwl~~~------g-~~~~g-~---------~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~--------- 63 (675)
--+||++.++ | ..+.+ . .-|.||||||+...|.|.+ +|.+ ..|+-.+++|-
T Consensus 182 K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~-~p~~--~~~~~v~lfD~~~~~~~~~~ 258 (1068)
T PLN02866 182 KLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLE-DPFD--AKPLDIIVFDVLPASNGNGE 258 (1068)
T ss_pred CcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEe-cCCC--CceeEEEEEecccccccCCC
Confidence 3489999998 2 12221 1 1278899999999999998 7766 66999999993
Q ss_pred -ceEEecCCcccccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 64 -CIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 64 -~~~V~d~G~~~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
.+.+.....|+ .+.-|.|+|-| .+|+++|=|.|..++..|+.|++.|+.+
T Consensus 259 ~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 259 GQISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred cceeeccccccc--CCCcceEEEec---CceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 22332222122 23446788854 5788999999999999999999999753
No 92
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.61 E-value=0.001 Score=57.94 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=64.9
Q ss_pred eeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC-CCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC
Q 005831 13 EGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (675)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~ 91 (675)
||+||+.....| ++||.||.|+++-||..|.... +.--+++-++-.- +|+ |.|....--+-.|-|.-....
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~P-m~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSHP-MVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhcc-ccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999776544 4999999999999999777432 1223333333211 333 233322223556666666778
Q ss_pred CCeEEEeccCHHHHHHHHHHHHH
Q 005831 92 NDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 92 ~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
.+++++=|.|.|-+.+|++++-.
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 93
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.46 E-value=0.13 Score=45.27 Aligned_cols=114 Identities=14% Similarity=-0.024 Sum_probs=66.1
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEE
Q 005831 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (675)
Q Consensus 207 KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyv 286 (675)
+....|++|+++||++|.|.+ ...+|.+.+..++++....... ....... . . +....+... +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGV-GARFVGG--R-K-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccc-eeEEEEE--e-c-CCccccceE-EEEEecCCCceE
Confidence 467789999999999999998 7999999999888776422211 1111110 0 0 011111111 111111111111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 005831 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 339 (675)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip 339 (675)
....+..+. ....+.|.++|.+++ .|+|++....+++++.+
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGDG-GTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCCC-cEEEEEEEEEecCCcch
Confidence 111111111 234578999998752 69999999999999874
No 94
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.44 E-value=0.0059 Score=72.36 Aligned_cols=110 Identities=16% Similarity=0.352 Sum_probs=80.4
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCC-CCCCCceeEEeecce--EEecCCcccccccceEEE
Q 005831 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCI--RVTDNGRESIHRKVFFIF 83 (675)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vi~~~~--~V~d~G~~~~~~~~~y~f 83 (675)
...+.|-|+|+..-.. =|.-=||+||-+|.|+...|.| .|.| ..+.||+.+=|-.|| .||.--|++--...-|-+
T Consensus 987 ~idVEYrGFLtmfed~-sgfGaWhRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhi 1064 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDG-SGFGAWHRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHI 1064 (1116)
T ss_pred ccceeeeeeeeeeecc-CCCchhhhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccCCceeEE
Confidence 3456699999999854 5666699999999999999999 8876 458999999999998 455432233222233433
Q ss_pred EEEeCCCC--------CC-eEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 84 TLYNTSNH--------ND-QLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 84 ~i~~~~~~--------~~-~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
.+.-++.. -| +..|||.+.||-..|+.+|-.+..+
T Consensus 1065 e~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1065 EVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 43333321 13 7889999999999999999988653
No 95
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.29 E-value=0.0085 Score=67.84 Aligned_cols=100 Identities=22% Similarity=0.305 Sum_probs=65.6
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEEecceeeeecc-CCCCCCC--CCceeEEeecceEEecCCcccccccceEEE
Q 005831 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHSKNE--DPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (675)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~~~~--~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f 83 (675)
.+.+.++||+++.+... . |++|||.|++..+....+ .|...+. .++...-+..+|=|.. .. -.+..++|
T Consensus 374 ~sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~--~~--~~~~~~~~ 445 (478)
T PTZ00267 374 TSDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPE--VY--SQKHPNQL 445 (478)
T ss_pred cCCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccH--Hh--cCCCCceE
Confidence 34567999999988742 3 899999999888777543 4433223 3333222555554411 00 01235778
Q ss_pred EEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
.|-++ ..+++-+-|.|.+|.+.||++|+.|+
T Consensus 446 ~i~~~--~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFN--NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEec--CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 88444 35577777899999999999999984
No 96
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.27 E-value=0.039 Score=51.04 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=64.9
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCC--------ce-eEEeecceEEecCCcccccccceE
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDP--------VR-SAIIDSCIRVTDNGRESIHRKVFF 81 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P--------i~-~~vi~~~~~V~d~G~~~~~~~~~y 81 (675)
.+||=|.++...+--. +.|||.|=.++|=|=|++.... ..| ++ .+.++. +.|.|..- +...-+
T Consensus 5 I~EG~L~ki~~~~~~~---q~R~~FLFd~~Li~CK~~~~~~-~~~g~~~~~y~~k~~~~l~~-~~V~d~~d---~~~~kn 76 (112)
T cd01261 5 IMEGTLTRVGPSKKAK---HERHVFLFDGLMVLCKSNHGQP-RLPGASSAEYRLKEKFFMRK-VDINDKPD---SSEYKN 76 (112)
T ss_pred cccCcEEEEecccCCc---ceEEEEEecCeEEEEEeccCcc-cccccccceEEEEEEEeeee-eEEEEcCC---CcccCc
Confidence 4899999998765333 4899999999988888654211 111 01 122232 34443211 123467
Q ss_pred EEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 82 ~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
.|.|.++. .+.+.|.|.|+||-.+||++|..|+.
T Consensus 77 aF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 77 AFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred eEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 89998763 46899999999999999999999865
No 97
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.25 E-value=0.011 Score=66.56 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=78.6
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeE----EeecceEEecCCcccccccceE
Q 005831 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSA----IIDSCIRVTDNGRESIHRKVFF 81 (675)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~----vi~~~~~V~d~G~~~~~~~~~y 81 (675)
+.++..|+|+||.++.-|.+ |+|=||||+--=|+|+- |... ++|---. +=+.++-+--.||++|..+.-|
T Consensus 313 s~~~pei~GfL~~K~dgkKs---WKk~yf~LR~SGLYys~-K~ts--k~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~ 386 (622)
T KOG3751|consen 313 SSSPPEIQGFLYLKEDGKKS---WKKHYFVLRRSGLYYST-KGTS--KEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDY 386 (622)
T ss_pred cCCCccccceeeeccccccc---ceeEEEEEecCcceEcc-CCCC--CCchhhHHHHhcccCceEEeecchhccCCCCCc
Confidence 35678899999999987777 99999999999998876 4333 2222111 1156666777789999999999
Q ss_pred EEEEEeCCC--CCCeEE-EeccCHHHHHHHHHHHHHHH
Q 005831 82 IFTLYNTSN--HNDQLK-LGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 82 ~f~i~~~~~--~~~~~~-~~a~s~ee~~~W~~a~~~a~ 116 (675)
.|+|--.+. +.+-++ |.|++...-..|+-||+-++
T Consensus 387 ~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 387 GFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 999965442 235665 56777888899999999775
No 98
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.14 E-value=0.051 Score=49.53 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=57.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeccCCCC----C--CCCCceeEEeecce-EEecCCcccccccceEE
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHS----K--NEDPVRSAIIDSCI-RVTDNGRESIHRKVFFI 82 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~----~--~~~Pi~~~vi~~~~-~V~d~G~~~~~~~~~y~ 82 (675)
||||||..-.+.+|-. |.+.|+...+ +.+.|.--.+.. . -..+....+ +.|+ |-.|. . ..=|.
T Consensus 1 k~GYLy~~~k~~~~~~-Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l-~sc~~r~~~~-~-----dRRFC 72 (104)
T cd01249 1 KEGYLYMQEKSKFGGS-WTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTL-KSCSRRKTES-I-----DKRFC 72 (104)
T ss_pred CCceEEEEcCCCCCCe-EEEEEEEEEcCCcEEEEEecccccccccCcccccceEEee-eeccccccCC-c-----cceee
Confidence 6999999998887666 7766666544 243222212211 0 123333333 4443 33332 1 23399
Q ss_pred EEEEeCCCCCCeEEEeccCHHHHHHHHHHHH
Q 005831 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (675)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~ 113 (675)
|.|-....+ ..++|=|.|..+-..||+|+.
T Consensus 73 Fei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 73 FDVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 999887544 779999999999999999984
No 99
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.86 E-value=0.024 Score=52.08 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=69.6
Q ss_pred eeeEEEeee-cccccccceeeEEEEecceeeeeccCCCCCC--CCCceeEEe-ecceEEecCCc-ccccccceEEEEEEe
Q 005831 13 EGWLHLIRS-NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAII-DSCIRVTDNGR-ESIHRKVFFIFTLYN 87 (675)
Q Consensus 13 eGwl~~~g~-~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~--~~Pi~~~vi-~~~~~V~d~G~-~~~~~~~~y~f~i~~ 87 (675)
=|||--+=. +..+.+-||.||++|+|+-|.-|+..|.+.. ..|..+.-| |--+||-..|. +.-+.+.-|.|.|=-
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 388876522 3456678999999999999999999998642 455555444 44445543332 111335568888865
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHH
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
..- =..-.|..++.+|.+.|.+||++
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 532 25667889999999999999975
No 100
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.76 E-value=0.47 Score=43.37 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.2
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEee
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHL 246 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~i 246 (675)
+.....|+||+++|++++.|++ ..++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCC
Confidence 5567789999999999999998 689999998888777543
No 101
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.53 E-value=0.41 Score=44.88 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=31.7
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE
Q 005831 205 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV 243 (675)
Q Consensus 205 ~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VV 243 (675)
.+....+|++|+++||+++.|+. ..++|++.+.....+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~ 40 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDM 40 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcce
Confidence 35667889999999999999999 799999977765544
No 102
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=95.39 E-value=0.73 Score=43.61 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=75.6
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCcEEE
Q 005831 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 287 (675)
Q Consensus 208 avgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI 287 (675)
+.-.|++++++|+++|.|++ .|-.++..++.++.++ +.--.-.+.+ . .+++.+=-..++....+++..+.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~----~l~~ciPG~~~~e~~~-~~~~~~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPE----NLARCIPGVESIEKVG-DEYKGKVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HH----HHHHHSTTEEEEEEEC-TEEEEEEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCHH----HHHhhCCCcEEeeecC-cEEEEEEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 35679999999999999755 8999999999999988 4433333332 1 345544344444544545555545
Q ss_pred EEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH
Q 005831 288 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML 354 (675)
Q Consensus 288 ~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL 354 (675)
....... .+-+.+.. --.+...+++. |+|+|-..++..|.+..+.........-+++
T Consensus 72 ~~~g~g~------~~~~~~~~---~~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~ 128 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASA---NITLSLEDDGG-TRVTWSADVEVGGPLASLGQRLIESVARRLI 128 (140)
T ss_dssp EEEEEEC------TCCEEEEE---EEEEEECCCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHH
T ss_pred eeeccCC------ccceEEEE---EEEEEcCCCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHH
Confidence 4444421 12233332 22234444444 9999999999999997554333333333333
No 103
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=95.37 E-value=0.12 Score=47.28 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=57.8
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecc-eeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEe
Q 005831 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH-FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (675)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~-~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~ 87 (675)
.+-++|.|.+++ |+ |.|+|+|+|... .|.|+. |.. .+=-|.+.+..+++|+-.. .+. |.|.-
T Consensus 12 ~Il~~g~v~K~k----gl-~~kkR~liLTd~PrL~Yvd--p~~--~~~KGeI~~~~~l~v~~k~-----~~~---F~I~t 74 (104)
T PF14593_consen 12 LILKQGYVKKRK----GL-FAKKRQLILTDGPRLFYVD--PKK--MVLKGEIPWSKELSVEVKS-----FKT---FFIHT 74 (104)
T ss_dssp -EEEEEEEEEEE----TT-EEEEEEEEEETTTEEEEEE--TTT--TEEEEEE--STT-EEEECS-----SSE---EEEEE
T ss_pred eEEEEEEEEEee----ce-EEEEEEEEEccCCEEEEEE--CCC--CeECcEEecCCceEEEEcc-----CCE---EEEEC
Confidence 345899999963 33 379999999988 888887 322 2222555558888888532 223 44443
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
+ +|+|-|-. ....|.+|.+|++++..+
T Consensus 75 p---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred C---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 3 78888876 556699999999998754
No 104
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.36 E-value=0.12 Score=48.79 Aligned_cols=96 Identities=23% Similarity=0.342 Sum_probs=61.0
Q ss_pred ceeeEEEeeeccccc-----ccceeeEEEEecceeeeeccCCCCC----CCCCceeEEeecceEEecCCccc--------
Q 005831 12 MEGWLHLIRSNRIGL-----QYSRKRYFLLEDHFLKSFKSVPHSK----NEDPVRSAIIDSCIRVTDNGRES-------- 74 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~-----~~~~~Ryfvl~g~~l~~yk~~p~~~----~~~Pi~~~vi~~~~~V~d~G~~~-------- 74 (675)
+.|+|..+..++... .-.+.||++|=..+|=|=|+|..+. +-.|..- +.|++.....
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~------l~V~~~e~~~~~~~~~~~ 78 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSF------LRVEKIEPDNQKIPLGSN 78 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEEeeccccc------eEEeeccccccccccccc
Confidence 567887776654321 1235789999999998888776431 1123322 2344321111
Q ss_pred -ccccceEEEEE-EeCCCCCCeEEEeccCHHHHHHHHHHHH
Q 005831 75 -IHRKVFFIFTL-YNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (675)
Q Consensus 75 -~~~~~~y~f~i-~~~~~~~~~~~~~a~s~ee~~~W~~a~~ 113 (675)
...+.+|..++ -|+..+...+.|.|.|.+|.++||+||.
T Consensus 79 ~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 79 LVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 13345565554 4555677889999999999999999985
No 105
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.06 E-value=0.033 Score=64.70 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=75.1
Q ss_pred CcceeeEEEe--eecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEe
Q 005831 10 GRMEGWLHLI--RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (675)
Q Consensus 10 ~~~eGwl~~~--g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~ 87 (675)
+-+||-|+|+ |+-++|...++||||-|.+.-|.|-|... ..|+.++-|..=--||..--+++.++ .+|.|.-
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~----~q~~~~Ipl~nI~avEklee~sF~~k--nv~qVV~ 638 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG----KQPIYTIPLSNIRAVEKLEEKSFKMK--NVFQVVH 638 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccceeEEecCCc----cCcccceeHHHHHHHHHhhhhccCCC--ceEEEEe
Confidence 3488888886 55567866679999999999999999444 67888887774435554334555444 4666655
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
.- +++.+-|.+--||..|+.||+.+..-
T Consensus 639 ~d---rtly~Q~~n~vEandWldaL~kvs~~ 666 (800)
T KOG2059|consen 639 TD---RTLYVQAKNCVEANDWLDALRKVSCC 666 (800)
T ss_pred cC---cceeEecCCchHHHHHHHHHHHHhcc
Confidence 43 69999999999999999999988653
No 106
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.85 E-value=1.5 Score=39.82 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=57.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEE-EEEEEcCCCc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRREDDGT 284 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~l-R~wr~~~dGs 284 (675)
+..+.+|+||+++||++|.|.. ....|.+.+...+... +...+.+.+... .+. .+.+... ..... +.+.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~-~~~G~~~~~~~~----~~~---~~~~~~~~~v~~~-~p~~ 71 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATGLS-LALGARLRFVVK----LPG---GPPRSFKPRVTEV-EPPR 71 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEeccc-cCCCCEEEEEEe----CCC---CCcEEEEEEEEEE-cCCC
Confidence 4567889999999999999998 7899997765544331 233333433321 111 1222222 22222 2233
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 331 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~ 331 (675)
. +.+....- + .+.. .....|.++|.+++ .|++++...
T Consensus 72 ~-~~~~~~~~---~--~~~~---~~~~~~~~~~~~~~-~T~~~~~~~ 108 (141)
T cd07822 72 R-LAWRGGLP---F--PGLL---DGEHSFELEPLGDG-GTRFVHRET 108 (141)
T ss_pred E-eEEEecCC---C--CcEe---eEEEEEEEEEcCCC-cEEEEEeeE
Confidence 2 33333211 1 0111 22358999998544 689888643
No 107
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=93.67 E-value=0.47 Score=45.70 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=73.8
Q ss_pred ceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCC
Q 005831 204 PAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 283 (675)
Q Consensus 204 ~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dG 283 (675)
+.+.....|+.+|+++|+++.|++ .+++.-+-+..++|+++ +++.-+--.... .-.=|.--.-|... .++
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~------~k~i~e~F~Trv~~--~~~ 71 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLER-NERELIAELDVG------FKGIRETFTTRVTL--KPT 71 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEecc-CcceeEEEEEEE------hhheeeeeeeeeee--cCc
Confidence 346677889999999999999999 79999999999999986 444322111110 00001111111111 122
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 005831 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 340 (675)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~ 340 (675)
.-.|....++-| - +-+.|+|-++|++.. .|+|...+..+.+.-+-.
T Consensus 72 ~~~I~~~l~~GP--------F--k~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 72 ARSIDMKLIDGP--------F--KYLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred hhhhhhhhhcCC--------h--hhhcCceEEEECCCC-ceEEEEEEEeeehhHHHH
Confidence 224444444221 1 145789999999654 899999999999887653
No 108
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.33 E-value=0.78 Score=41.39 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=58.4
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~ 90 (675)
.+||=+...+. | +.||+.|=.+.|=+=|+++. .-=.|+-|.=.+.+|.++ ..+ ....|.|-....
T Consensus 5 lleg~l~~~~~---~----~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~----~~~-d~~~F~v~~~~~ 69 (97)
T cd01222 5 LLEGRFREHGG---G----KPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEH----LPG-EPLCFRVIPFDD 69 (97)
T ss_pred eeeceEEeecC---C----CceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecC----CCC-CCcEEEEEecCC
Confidence 36777764443 2 35766665555555454432 333444443334566553 122 368888866644
Q ss_pred CCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 91 HNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 91 ~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
..+++++-|.|.|+-..||++|+.|+.
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999864
No 109
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.95 E-value=5.9 Score=36.59 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=26.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~ 236 (675)
+.....|+|||+.|++++.|.. ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3456789999999999999998 79999963
No 110
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=92.38 E-value=3.8 Score=37.29 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~ 236 (675)
+....+|+||+++||++|.|.+ ..+.|.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~ 31 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP 31 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc
Confidence 4566789999999999999988 68999875
No 111
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=91.33 E-value=0.43 Score=54.59 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=60.7
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCC-----Cc--------------eeEEeecceEEecCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNED-----PV--------------RSAIIDSCIRVTDNG 71 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~-----Pi--------------~~~vi~~~~~V~d~G 71 (675)
.++|-+-+.++ .+. |++||+.|.|+++.-+--.-..+.+. ++ +.--|..+|-|..
T Consensus 374 ~~~g~~~~~~~---~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 447 (496)
T PTZ00283 374 LYEGIVKKQSS---DLS-WKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPS-- 447 (496)
T ss_pred eeeeEEecccC---Ccc-cceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccH--
Confidence 36666665433 233 89999999877654442111111000 00 1111233445553
Q ss_pred cccccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHH
Q 005831 72 RESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (675)
Q Consensus 72 ~~~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~ 116 (675)
..-..+.-|||.+.++ ..+++-|-|.+.+|.+.||++|++++
T Consensus 448 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 448 -KYTGSNAAHVFAVAFK--TGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred -HhhCCCCCcEEEEEec--CCcEEEEecCCchhHHHHHHHHHHhc
Confidence 2233356799999997 68899999999999999999999985
No 112
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.26 E-value=1.3 Score=41.24 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=55.2
Q ss_pred ceeeEEEEecceeeeeccCCCC--CCCCCceeEEeecceEEecCCc-cc--ccccceEEEEEEeCCCCCCeEEEeccCHH
Q 005831 29 SRKRYFLLEDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGR-ES--IHRKVFFIFTLYNTSNHNDQLKLGASSPE 103 (675)
Q Consensus 29 ~~~Ryfvl~g~~l~~yk~~p~~--~~~~Pi~~~vi~~~~~V~d~G~-~~--~~~~~~y~f~i~~~~~~~~~~~~~a~s~e 103 (675)
.+.||..|=.+.+=.=|++... .++--.|..+.=..++|+++.. .+ -..+--|.|.|-.+ ++...++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 4578877666666555644322 0111222222212335665531 11 12245688888886 45567999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 005831 104 EAAKWIHSLQEAALKG 119 (675)
Q Consensus 104 e~~~W~~a~~~a~~~~ 119 (675)
+-.+||+||+-|+...
T Consensus 99 ~K~kWm~al~~a~sni 114 (116)
T cd01223 99 LRKKWLKALEMAMSNI 114 (116)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999997643
No 113
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=90.43 E-value=11 Score=35.93 Aligned_cols=119 Identities=13% Similarity=0.002 Sum_probs=74.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~-~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGs 284 (675)
+..+..|+||+++|++++.+... ....|-+.+..+++++-=++.-.|-...+.+ .. ..+ .+.-|-... ++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-cccc
Confidence 56778899999999999998873 3577999999999886422333566665522 11 111 222222222 3445
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 337 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGw 337 (675)
..+.++-++-+. +. . .-....+.+.+.|.+++ +|.|+|.+..++.+-
T Consensus 76 ~~~~y~vveg~~-~~-~---~~~~y~~t~~v~~~~~~-~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDV-LK-D---GYKSYKVEIKFVPKGDG-GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccc-cc-C---ceEEEEEEEEEEECCCC-CEEEEEEEEEEECCC
Confidence 566555553221 11 0 12344667789998544 799999999997654
No 114
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.31 E-value=7.5 Score=36.08 Aligned_cols=108 Identities=9% Similarity=0.030 Sum_probs=64.2
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCce---EEEEEEEccCCCCCCcCCceEEEEEEEEEcCCCc
Q 005831 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT---DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (675)
Q Consensus 208 avgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~t---dIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dGs 284 (675)
.+..|+||+++||+++.|.+ ....|.+.+..++++..-++.. ..+..+.+. .+.. +...-.....+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~----~~~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH----FGIP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe----cCCc---eEEEEEEEEEcCCC
Confidence 45679999999999999999 7999999999999986432221 234444421 1221 21111111112343
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 005831 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (675)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkG 336 (675)
. +...++. |-++ ....-+.++|.++ .|+||+.+..++.|
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCCc
Confidence 3 2233331 1111 1223567899865 59999999999843
No 115
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=88.27 E-value=11 Score=36.68 Aligned_cols=128 Identities=14% Similarity=0.046 Sum_probs=68.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEE-EEEE-EcCCC
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWR-REDDG 283 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~l-R~wr-~~~dG 283 (675)
|.++-.|.+||++|++.|.|++ +--.++..++-+++.++ .--...+++ . .+++ ..|--. +.-. .+...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~-e~~~~v~l~---i-g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGD-EYTAKVKLK---I-GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCC-eEEEEEEEe---e-ccee-EEEEEEEEEccccCCCc
Confidence 4566789999999999999877 33456666777777666 333444442 1 3455 222221 1111 11223
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH
Q 005831 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML 354 (675)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~~~~~~~~~~~~~mL 354 (675)
+|.|-..-- |.-.--.......+.|-+. .|+|+|..+.|.+|-+-++-+..-.+.+-+++
T Consensus 73 ~~~i~g~G~---------~~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli 132 (146)
T COG3427 73 SITINGSGG---------GAAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLI 132 (146)
T ss_pred EEEEEeecc---------cccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHH
Confidence 344432210 0000001112344556554 39999999999999886543333333333333
No 116
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=88.27 E-value=10 Score=38.02 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=88.0
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEE----c
Q 005831 205 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRR----E 280 (675)
Q Consensus 205 ~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~----~ 280 (675)
...-..+|++|+++|+++..|++ ..+.|+..+...+|++ ++- -+++.+ .| .-....|.- +
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVld---dkr--SrW~~~---ap-------~g~~v~Wea~it~d 134 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVLD---DKR--SRWKAN---AP-------LGLEVEWEAEITKD 134 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeeccC---CCc--cceeEc---CC-------CCceEEEeehhhcc
Confidence 34455678999999999999999 7999999999988874 433 334431 22 112234443 2
Q ss_pred CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-ccc-cchhhHHHHHHHHHH
Q 005831 281 DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQP-SSARSITIRMLGRVA 358 (675)
Q Consensus 281 ~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~-~~~-~~~~~~~~~mL~~va 358 (675)
..| -.|...|++-..+ +..|.|| +.+..+. +|.|...+.-.|=||.-. ..+ .|...--..+-.-+.
T Consensus 135 ~~~-e~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~ 202 (217)
T COG5637 135 IPG-ERIQWESLPGARV-ENSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLE 202 (217)
T ss_pred CCC-cEEeeecCCCCcC-CCCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHH
Confidence 233 3677888854434 4568888 6777644 689988888888777753 222 244443444556777
Q ss_pred HHHHHHHh
Q 005831 359 ALRELFRA 366 (675)
Q Consensus 359 ~LRe~~~~ 366 (675)
.+|+++..
T Consensus 203 RFk~~~e~ 210 (217)
T COG5637 203 RFKEYQEN 210 (217)
T ss_pred HHHHHHHc
Confidence 88888875
No 117
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.21 E-value=5.7 Score=36.89 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=60.1
Q ss_pred cccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC--CCeEEEec
Q 005831 22 NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH--NDQLKLGA 99 (675)
Q Consensus 22 ~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~--~~~~~~~a 99 (675)
++.|.+ +|.|.-+--+|+.=.++.......|. .+.=+++.+.+-|.+-+-++...-|.|..+... ..++.+=|
T Consensus 21 ~~K~~e---R~vFLFe~~lvfsk~~~~~~~~~~~~--Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA 95 (114)
T cd01232 21 IQKGRE---RRVFLFEQSIIFAKEVKKKKQFGNPK--YIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKA 95 (114)
T ss_pred cCCCce---eEEEEeeceEEEEEEeccCCCCCcee--EEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEEC
Confidence 345544 77777777777765433322112221 333455566666664444456688888777653 58999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 005831 100 SSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 100 ~s~ee~~~W~~a~~~a~~ 117 (675)
.|+|+-..|+..|++..+
T Consensus 96 ~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 96 NSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999998865
No 118
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=86.81 E-value=1.5 Score=50.58 Aligned_cols=96 Identities=23% Similarity=0.311 Sum_probs=65.0
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCC--CCCceeEEeecceEEecCCcccccccceEEEEEEeCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~--~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~ 89 (675)
+||=|+|+-.++-..| .||++|=...+-|-+.+-.-.. -++--..-++++...++.-.+. ++.+++ +
T Consensus 274 KEG~l~Kis~k~~~~q---eRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~~~--~~tF~~-~----- 342 (623)
T KOG4424|consen 274 KEGQLQKISAKNGTTQ---ERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNEEL--PHTFIL-T----- 342 (623)
T ss_pred hccceeeeeccCCCcc---eeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccccC--CceEEE-e-----
Confidence 9999999999877766 9999999988888764431110 1222223345554444321111 123222 2
Q ss_pred CCCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 90 NHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 90 ~~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
-+.+.++|.|.+.+|-..|+.+++.||+.
T Consensus 343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 26899999999999999999999999984
No 119
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.54 E-value=2.7 Score=38.81 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=59.0
Q ss_pred cccceeeEEEEecceeeeeccCCCC-----CCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCCCCeEEEecc
Q 005831 26 LQYSRKRYFLLEDHFLKSFKSVPHS-----KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGAS 100 (675)
Q Consensus 26 ~~~~~~Ryfvl~g~~l~~yk~~p~~-----~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~~~~~~~~a~ 100 (675)
-|=.+.|||||=.+.|-+....|.. .++.|+.-+.|- +.||. + +..++|.|--. --.++.+-|.
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~---~lEd~--e----~~~~aFeI~G~--li~~i~v~C~ 93 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVT---RLEDT--E----ALKNAFEISGP--LIERIVVVCN 93 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEe---chHhc--c----CccceEEEecc--CcCcEEEEeC
Confidence 3335799999999999999987753 257888777664 33431 1 23578888644 4567888999
Q ss_pred CHHHHHHHHHHHHHH
Q 005831 101 SPEEAAKWIHSLQEA 115 (675)
Q Consensus 101 s~ee~~~W~~a~~~a 115 (675)
|.+|...|+.-|+.-
T Consensus 94 ~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 94 NPQDAQEWVELLNAN 108 (111)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999863
No 120
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=85.68 E-value=0.61 Score=56.38 Aligned_cols=95 Identities=25% Similarity=0.409 Sum_probs=67.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~ 91 (675)
++|.||++-.+ ....|.+|||-+.++.+-|++|--.... .-..-++.| .|...-.++ ..-|.|.|.+ +
T Consensus 276 ~~~~l~~k~~~--~~~tw~r~~f~~q~~~l~~~~r~~~~~~---~~~~dL~~c-svk~~~~~~---drr~CF~iiS---~ 343 (785)
T KOG0521|consen 276 MEGYLRKKASN--ASKTWKRRWFSIQDGQLGYQHRGADAEN---VLIEDLRTC-SVKPDAEQR---DRRFCFEIIS---P 343 (785)
T ss_pred hhhhhhhhccc--chhhHHhhhhhhhccccccccccccccc---cccccchhc-cccCCcccc---cceeeEEEec---C
Confidence 66666665443 6777999999999999999996664421 111222433 333221211 2449999998 8
Q ss_pred CCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 92 NDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 92 ~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
++.+.+-|+|..+-..||.+++..+.+
T Consensus 344 tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 344 TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999875
No 121
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=85.42 E-value=0.18 Score=52.61 Aligned_cols=138 Identities=10% Similarity=-0.054 Sum_probs=92.3
Q ss_pred CEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEE
Q 005831 176 WTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHK 255 (675)
Q Consensus 176 W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~ 255 (675)
|.+....+-+.++.+..+. ..+...++..+..-........+.-+. .+..|+..-.-...++.+..++++...
T Consensus 27 ~s~~k~~~~v~~~~~a~~~------~~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~s 99 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK------PKGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWTS 99 (241)
T ss_pred HHHHhhcceeEEeccCCcC------cCCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeeeE
Confidence 5555555666666655432 223344444444433333332222222 233444433445666777788888887
Q ss_pred EEccCCCCCCcCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCC
Q 005831 256 QLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHG 321 (675)
Q Consensus 256 ~~~~~~~P~pvs~RDfV~lR~wr~~~dGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~ 321 (675)
.+.. +.-..+.+|+|+...+..+...+......++++++.+++...++|+..+++|++..|++..
T Consensus 100 ~~~~-~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~ 164 (241)
T KOG3845|consen 100 EFDS-FNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE 164 (241)
T ss_pred ecHh-hhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc
Confidence 7744 3345689999999999988777777777888999999999999999999999999999743
No 122
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=84.46 E-value=1.6 Score=52.31 Aligned_cols=94 Identities=24% Similarity=0.345 Sum_probs=69.8
Q ss_pred ceeeEEEeeec--ccccccceeeEEEEecceeeeeccCCCCC--CCCCceeEEee-cceEEecCCcccccccceEEEEEE
Q 005831 12 MEGWLHLIRSN--RIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIID-SCIRVTDNGRESIHRKVFFIFTLY 86 (675)
Q Consensus 12 ~eGwl~~~g~~--~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vi~-~~~~V~d~G~~~~~~~~~y~f~i~ 86 (675)
++|-|-.+... -+.-.+++.|||||.|..|+-||.....+ .+-||.+.++= |- +++.--+..|.|+.|
T Consensus 1032 k~G~lKirEe~srll~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv-------kkklKpPt~wg~T~i 1104 (1186)
T KOG1117|consen 1032 KEGILKIREEPSRLLSGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV-------KKKLKPPTSWGFTAI 1104 (1186)
T ss_pred ccceEEeccCccccccCCccceEEEEecCcEEEEeehhhccccccccccccceEEecc-------ccccCCCCccceeee
Confidence 56766554332 22335678999999999999999777543 27898777662 22 455556899999999
Q ss_pred eCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 87 ~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.- .++.-+.|.++.+.-.|+-.+-.|
T Consensus 1105 ~e---khh~~l~cd~s~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1105 SE---KHHWYLCCDSSSEQTEWFTSIFKA 1130 (1186)
T ss_pred ee---cceEEEecCCccccchhhhhhhhh
Confidence 43 348999999999999999988777
No 123
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=84.33 E-value=3.9 Score=49.17 Aligned_cols=97 Identities=19% Similarity=0.376 Sum_probs=69.1
Q ss_pred ceeeEEEeeecc-------cccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeec--ceEEecCCcccc-cccceE
Q 005831 12 MEGWLHLIRSNR-------IGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS--CIRVTDNGRESI-HRKVFF 81 (675)
Q Consensus 12 ~eGwl~~~g~~~-------~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~--~~~V~d~G~~~~-~~~~~y 81 (675)
.-|+||..-++. -++.=..++|-||.|-.|.||..... ..|.+.+-|.- |+-|-. -+++ |-+.+|
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S---~tP~~lI~~~Eivclav~~--pd~~pn~~~~f 568 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKS---TTPNGLININEIVCLAVHP--PDTYPNTGFIF 568 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCC---CCCCceeeccceEEEeecC--CCCCCCcCcee
Confidence 349999866553 33444568999999999999995543 45665555532 222221 2333 447889
Q ss_pred EEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 82 ~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+|.||-. .++-+.+|+++++++.+|-+|+..+
T Consensus 569 ~fE~~l~--~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 569 IFEIYLP--GERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred EEEEeec--ccceEEeecccHHHHHHHHHHHHHh
Confidence 9999976 6899999999999999999998754
No 124
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=82.31 E-value=1.4 Score=51.60 Aligned_cols=92 Identities=17% Similarity=0.396 Sum_probs=63.3
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~ 91 (675)
+.|++.+.+ .++| |+++||||++.-...||+.+. +..+.|-..+=|-..|..+-. .--|.|-+. ..
T Consensus 251 kSgy~~~~~-s~~k--~lkrr~~v~k~gqi~~y~~~~-~~~~~p~s~~d~~s~~~~~~~-------~~s~~fqli---~~ 316 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIK--SLKRRYVVFKNGQISFYRKHN-NRDEEPASKIDIRSVTKLEQQ-------GAAYAFQLI---TS 316 (936)
T ss_pred cccchhcch-HHHH--HHHhHheeeccceEEEEEcCC-CccccccCcccccccceeecc-------chhHHhhhh---hh
Confidence 778888888 4465 678999999999999999444 434555544434222222221 222333332 35
Q ss_pred CCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 92 NDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 92 ~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
.+++.+-+.|.--.+.|+.-|+.++.
T Consensus 317 t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 78999999999999999999999886
No 125
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=79.14 E-value=34 Score=32.72 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=29.0
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 005831 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (675)
Q Consensus 203 ~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~ 235 (675)
...+....+|+||++.|+++|.|.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 4678999999999999999999988 6899988
No 126
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=77.66 E-value=6.7 Score=45.50 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=71.9
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEE--ecceeee--eccCCCCCCCCCceeEEeecceEEecCCcccccccceEE
Q 005831 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLL--EDHFLKS--FKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFI 82 (675)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~--yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~ 82 (675)
.++..|||+||.-..++||.+ |-|-|-+- +-+.+.| +..++... .-|.-+.++-.|.|=.- +++ ..=|.
T Consensus 262 p~p~t~eGYlY~QEK~~~g~s-WvKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~RRkt---dSI--dKRFC 334 (812)
T KOG1451|consen 262 PTPSTKEGYLYMQEKSKIGKS-WVKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSRRKT---DSI--DKRFC 334 (812)
T ss_pred CCCcccceeeeehhhhhccch-hhhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhccCcc---ccc--cccee
Confidence 356679999999999999987 66666664 3445554 22233332 56888888888875321 222 22377
Q ss_pred EEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
|.|.-- +..+.++|-|-|.++-.-||+|..-|
T Consensus 335 FDve~~-erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 335 FDVEVE-ERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeec-ccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 877654 68899999999999999999998776
No 127
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=73.99 E-value=1.5 Score=50.46 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=65.4
Q ss_pred CcceeeEE-EeeecccccccceeeEEEEecceeeeeccCCC-CCCCCCceeEEeecceEEe-cCCcccccccceEEEEEE
Q 005831 10 GRMEGWLH-LIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH-SKNEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLY 86 (675)
Q Consensus 10 ~~~eGwl~-~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~-~~~~~Pi~~~vi~~~~~V~-d~G~~~~~~~~~y~f~i~ 86 (675)
...||=|- |+|+=++=+. |+.|||-|.|-.|.|-|-+-. |-+.-||..--|-.---|. .+|+++ -.=+|.|+
T Consensus 735 p~iEGQLKEKKGrWRf~kR-W~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rs----lpKAFEIF 809 (851)
T KOG3723|consen 735 PLIEGQLKEKKGRWRFIKR-WKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRS----LPKAFEIF 809 (851)
T ss_pred chhcchhhhhccchhhhhh-hccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcc----cchhhhee
Confidence 34566653 5566555555 899999999999999664432 3233445333332110022 233333 33467776
Q ss_pred eCCCCCCeEEEeccCHHHHHHHHHHHHHHHHhCC
Q 005831 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEAALKGG 120 (675)
Q Consensus 87 ~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~~~ 120 (675)
-. .+++.|-|.+..-|+.|.+.|.-|++++.
T Consensus 810 TA---D~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 810 TA---DKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred ec---CceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 54 34499999999999999999999988643
No 128
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=72.11 E-value=5.1 Score=37.01 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=61.0
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcc--cccccceEEEEEE
Q 005831 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--SIHRKVFFIFTLY 86 (675)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~--~~~~~~~y~f~i~ 86 (675)
.+.++|+++|.|-- + ++=|.+|||=|=.|.|..|-... + ...-.++.| .|+|-.-| .+-|..--+++|
T Consensus 2 DcIvhGyi~KLGGP-F-ls~WQ~Ry~~LfPNRLE~~~~~~-~---~~~eLi~M~---~i~~V~~e~~~iK~~~CI~ik~- 71 (116)
T cd01240 2 DCIVHGYIKKLGGP-F-LSQWQTRYFKLYPNRLELYGESE-A---NKPELITMD---QIEDVSVEFQQIKEENCILLKI- 71 (116)
T ss_pred ceEEeeehhhhCCH-H-HHHHHHHHheeCcceeeeccccc-c---cCCcEEEee---hhhhcchhheeeccCceEEEEE-
Confidence 34589999998763 2 34499999999999999974222 2 122223334 23322211 112222223333
Q ss_pred eCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 87 ~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
.+..++.|-+.+.-+-.+|++.|+.|-.
T Consensus 72 ---k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 72 ---RDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred ---cCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 3478899999999999999999998855
No 129
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=71.50 E-value=2 Score=49.79 Aligned_cols=93 Identities=20% Similarity=0.367 Sum_probs=64.6
Q ss_pred ceeeEEEeeecccccccceeeEEEEeccee-----eeeccCCCCCCCCCceeEEeecceEEe--cCCccccc-ccceEEE
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFL-----KSFKSVPHSKNEDPVRSAIIDSCIRVT--DNGRESIH-RKVFFIF 83 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l-----~~yk~~p~~~~~~Pi~~~vi~~~~~V~--d~G~~~~~-~~~~y~f 83 (675)
+.|+||-+|+|--- -|++|||||----- -.|..|. .+|-.-+-+||+ +|. |-.. ..+ |+.+
T Consensus 466 hsgylyaig~nvwk--rwkkrffvlvqvsqytfamcsyrekk----aepqel~qldgy-tvdytdp~p-glqgg~~f--- 534 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWK--RWKKRFFVLVQVSQYTFAMCSYREKK----AEPQELIQLDGY-TVDYTDPSP-GLQGGKHF--- 534 (1218)
T ss_pred cceeehhhhhHHHH--HhHhhEEEEEEhhhhhhHhhhhhhcc----cChHHHhhccCe-eeccCCCCC-ccccchHH---
Confidence 78999999987332 38999999964211 1244344 566667788988 554 2211 122 3333
Q ss_pred EEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
+|.-...++++||..+.+|---|.+|+-.|--
T Consensus 535 --fnavkegdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 535 --FNAVKEGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred --HHHhccCceEEeccCchhhhhHHHHHHHHhhC
Confidence 35557889999999999999999999999944
No 130
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.76 E-value=16 Score=32.71 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=48.8
Q ss_pred ceeeEEEeeecccccccceeeEEEEec-ceeeeeccCCCC---CCCCCceeEEeec-ceEEecCCcccccccceEEEEEE
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLED-HFLKSFKSVPHS---KNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLY 86 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g-~~l~~yk~~p~~---~~~~Pi~~~vi~~-~~~V~d~G~~~~~~~~~y~f~i~ 86 (675)
+.|-+.++ .|+ |.|+|=|+|.. =.|.|+. |.. ++++|+ .. +++|+-- +.+.+++
T Consensus 3 ~~g~v~Kr----~gl-f~kkR~LiLTd~PrL~yvd--p~~~~~KgeIp~-----s~~~l~v~~~-----~~~~F~I---- 61 (89)
T cd01262 3 KIGAVKKR----KGL-FAKKRQLILTNGPRLIYVD--PVKKVVKGEIPW-----SDVELRVEVK-----NSSHFFV---- 61 (89)
T ss_pred eeeeeeeh----hcc-ccceeeEEEecCceEEEEc--CCcCeEEeEecc-----cccceEEEEe-----cCccEEE----
Confidence 45555553 455 67899888854 4566665 433 134554 55 5666631 1223333
Q ss_pred eCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 87 ~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
...+++|.|- .-...|.+|.++++++
T Consensus 62 --~Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 62 --HTPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred --ECCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 3567888873 4447899999999987
No 131
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=70.11 E-value=4.3 Score=46.01 Aligned_cols=93 Identities=19% Similarity=0.291 Sum_probs=56.9
Q ss_pred cceeeEEEeeeccccccc---ceeeEEEEecceeeeeccCCCC-C---CCCCceeEEeecceEEecCCcccccccceEEE
Q 005831 11 RMEGWLHLIRSNRIGLQY---SRKRYFLLEDHFLKSFKSVPHS-K---NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~---~~~Ryfvl~g~~l~~yk~~p~~-~---~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f 83 (675)
-..||+-+.|.=..=..| |..|||||+.+.|.|||..-.. + +..-+.+++|..+ . -+---|
T Consensus 19 y~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ah-E-----------fDe~rf 86 (611)
T KOG1739|consen 19 YSDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAH-E-----------FDECRF 86 (611)
T ss_pred ecCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccc-c-----------chhhee
Confidence 367999777763332222 5599999999999999977643 1 1233334444322 1 111122
Q ss_pred EEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHHh
Q 005831 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (675)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~ 118 (675)
.|. -+..-..+-+...+.-..|+++|+.-...
T Consensus 87 dIs---vn~nv~~lra~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 87 DIS---VNDNVWYLRAQDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred eeE---eccceeeehhcCcHHHHHHHHHHHHHhhc
Confidence 221 12455566688888889999999987553
No 132
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=66.49 E-value=1.8 Score=51.65 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=72.3
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCc-ccccccceEEEEEEeCCC
Q 005831 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGR-ESIHRKVFFIFTLYNTSN 90 (675)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~-~~~~~~~~y~f~i~~~~~ 90 (675)
-.|+|.++=.|+=|.| |=|.|-..-+|++||+.. |..|+-++.|=|+ .|.--|- +.+ +.=|||++-++
T Consensus 926 Lsg~Llrkfknssgwq---kLwvvft~fcl~fyKS~q---D~~~laslPlLgy-svs~P~~~d~i--~K~~vfkl~fk-- 994 (1036)
T KOG3531|consen 926 LSGYLLRKFKNSSGWQ---KLWVVFTNFCLFFYKSHQ---DSEPLASLPLLGY-SVSIPAEPDPI--QKDYVFKLKFK-- 994 (1036)
T ss_pred hhHHHHHHhhccccce---eeeeeecceeeEeecccc---ccccccccccccc-ccCCCCCCCCc--chhheeeeehh--
Confidence 6788888888888855 999999999999999776 4677777777665 5553321 222 33489998775
Q ss_pred CCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 91 ~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
+..|-++|+|.-.-++||+.|+.|
T Consensus 995 -~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 995 -SHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred -hhHHHHhhhhhhhhhhHHHHhhcC
Confidence 578999999999999999999988
No 133
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=66.22 E-value=7.6 Score=42.45 Aligned_cols=108 Identities=17% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCC-C-CCCceeEEe-ecceEEecCCcccccccceEE
Q 005831 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-N-EDPVRSAII-DSCIRVTDNGRESIHRKVFFI 82 (675)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~-~~Pi~~~vi-~~~~~V~d~G~~~~~~~~~y~ 82 (675)
...++.|-||+--.-.+.+.-|-.+.||+.|+|..+.-|..-|..- + .--.++.-+ +--|+|-.. -++. .+..|.
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd-sd~~-D~R~~C 354 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD-SDTV-DSRQHC 354 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc-cccc-ccccce
Confidence 3456779999999999999999999999999999999999777431 0 000000000 111111110 1111 135689
Q ss_pred EEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
|.|-... ..-..|..+...|-++|-++|+.|.-
T Consensus 355 F~~qs~~--ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 355 FLLQSSG--GEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEEcCC--CCceEEEEehhhHHHHHHHHHhhHHh
Confidence 9998764 34445778899999999999999864
No 134
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=65.39 E-value=1e+02 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~ 236 (675)
+....+|+|||+.|++++.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4567789999999999999988 68999765
No 135
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=62.83 E-value=12 Score=35.82 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=30.2
Q ss_pred ccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 77 RKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 77 ~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
++..|-|+|-.-+.....++|-|.|+.+-.+|+++|+++
T Consensus 96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 478899999666656666999999999999999999986
No 136
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=61.31 E-value=1.3e+02 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccccc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCF 237 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~ 237 (675)
++...+|+||+++|++++.+.+ ...+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5677899999999999999988 688998753
No 137
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=61.00 E-value=2.3 Score=49.47 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=34.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVP 48 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p 48 (675)
+.+|||++++.|..+.++|++=||||++..|.-|..+.
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~ 600 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR 600 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh
Confidence 47899999999999999999999999999999998444
No 138
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=60.95 E-value=23 Score=32.34 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.3
Q ss_pred ceEEEEEEeCCC-CCCeEEEeccCHHHHHHHHHHHHH
Q 005831 79 VFFIFTLYNTSN-HNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 79 ~~y~f~i~~~~~-~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
.-..|+|+...+ ..+.+.|-|.|.++|..|...|..
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 336788866542 356799999999999999999863
No 139
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=56.30 E-value=9.7 Score=43.04 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=70.6
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecc------eeeeeccCCCCCC---CCCc-eeEEeecceEEecCCcccc
Q 005831 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSKN---EDPV-RSAIIDSCIRVTDNGRESI 75 (675)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~~---~~Pi-~~~vi~~~~~V~d~G~~~~ 75 (675)
+.+-.++.|.++.. ++|+|.--|+++|.+|..- .|.+|..+..+.. .-=+ |.+-+-.|..|+.. ++-+
T Consensus 4 ~~~~~~k~g~~~~~-~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~-~~~~ 81 (429)
T KOG4047|consen 4 ICSCLVKDGVPDNH-RNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESG-RRCQ 81 (429)
T ss_pred ccCcccccCccchh-hhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecc-cccc
Confidence 44667789998875 4568877799999999762 2334443333322 2223 44445445577764 5445
Q ss_pred cccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 76 HRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 76 ~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
-|+-+|+|..-+..+ .|.|.+.-+++.||.+|..-+-
T Consensus 82 ~~~~i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~~~ 118 (429)
T KOG4047|consen 82 TGPGITAFFCDRAEE-----LFNMLQDLMQANWINAIEEPAI 118 (429)
T ss_pred cCCCceEEEecchHH-----HHHHHHHHHhhhhhhhhhhccc
Confidence 677888887776654 7889999999999999987643
No 140
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=54.77 E-value=2.3e+02 Score=29.20 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=78.2
Q ss_pred ceEEEEEEecC--cHHHHHHHHHhCCCCccccccccceeEEEEeeCCceEEEEEEEccCCCCCCcCCceEEEE-EEEEEc
Q 005831 204 PAIMAVGVVDG--TSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLR-RYWRRE 280 (675)
Q Consensus 204 ~~~KavgvV~a--spe~Vf~vL~d~d~~R~eWD~~~~~~~VVE~id~~tdIvY~~~~~~~~P~pvs~RDfV~l-R~wr~~ 280 (675)
.+-|..-.|.- .-.+|...|+|.+ .-...|..+..++++...+++.-++.++++. +..+.+-+.+. ..--..
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn-~~~~fn~~~ikgki~RvYnpNLvmiqqry~~----~~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFN-DNKKFGRKFIKGKVVRVYSPNLIMIQQRYKD----ASGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhccc-cccCCCchheeeeEEEEeCCCeEEEEeecCC----CCCCcceEEeEeeeeeec
Confidence 45566666643 4788999999998 5778999999999999999999999999854 23344444443 222222
Q ss_pred CCCcEEEEEEecCCCCCCC--CCC--------------------------eEEEEEeceEEEEEeCCCCCeeEEEEE
Q 005831 281 DDGTYVILYHSVFHKKCPR--QKG--------------------------SVRACLKSGGYVITPMNHGKKSVVKHM 329 (675)
Q Consensus 281 ~dGsyvI~~~SV~hp~~Pp--~~G--------------------------~VRa~i~~gGwvI~Pl~~~~~t~VT~i 329 (675)
.+.+-+|++.|..--+.-+ .+. .-..-+..+||+|+.-+. ...|||+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 4556777788865322211 111 223355678899988653 4677774
No 141
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=54.10 E-value=1.4e+02 Score=28.70 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=59.0
Q ss_pred eeEEEEecceeeeeccCC-CCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHH
Q 005831 31 KRYFLLEDHFLKSFKSVP-HSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWI 109 (675)
Q Consensus 31 ~Ryfvl~g~~l~~yk~~p-~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~ 109 (675)
++-|+-+.-+|++=+++. ......| +.+.=+++.+.+-|..-+-+....-|.|.... ....|++=|.|.|.-..|+
T Consensus 32 RhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 32 RHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAAWV 108 (133)
T ss_pred eEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHHHH
Confidence 556666777777755421 1101233 24556677777777644434456788887765 5679999999999999999
Q ss_pred HHHHHHHHhC
Q 005831 110 HSLQEAALKG 119 (675)
Q Consensus 110 ~a~~~a~~~~ 119 (675)
+.|.....++
T Consensus 109 ~~I~~iL~~Q 118 (133)
T cd01227 109 NEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 142
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=48.11 E-value=91 Score=28.47 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=58.2
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeecc-CCCC--CCCCCceeEEeecceEEecCCcccccccceEEEEEEe
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~--~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~ 87 (675)
.++|=|+-...+..-.. +|.++|++...+|--... +... ....|+..+.+. -|.|+| ++-.+|.|.-
T Consensus 3 i~~G~l~e~~~~~~kp~-~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~---ni~D~~------~~kNafki~t 72 (100)
T cd01226 3 ILYGELEEFDVETKKPV-QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVV---NVKDRE------NAKKVLKLLI 72 (100)
T ss_pred EEcCcEEEechhhCCcc-ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEE---ecCCCc------CcCceEEEEe
Confidence 35666666666544333 455588888888765332 1111 124666555544 345544 3556777765
Q ss_pred CCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 88 ~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
.. +.-.+.|.|+++-..||..|++|+.
T Consensus 73 ~~---~s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 73 FP---ESRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred CC---ccEEEEeCCHHHHHHHHHHHHHHhc
Confidence 43 3344779999999999999999963
No 143
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=43.30 E-value=29 Score=41.99 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.2
Q ss_pred cceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHHhCC
Q 005831 78 KVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALKGG 120 (675)
Q Consensus 78 ~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~~~~ 120 (675)
+..|||.|--+.-...-+.+||.|+|||-.|.+++++++..++
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~ 914 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKAD 914 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhh
Confidence 3568888877766777889999999999999999999987543
No 144
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=41.12 E-value=29 Score=31.39 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=51.5
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeee--eccCCCCC-C------CCCceeEEeecceEEecCCcccccccceE
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKS--FKSVPHSK-N------EDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~--yk~~p~~~-~------~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y 81 (675)
..||.|++.-+ -.+ +.|=|.|=+-.|-| ||+++... . .+|+.-+ .++..
T Consensus 4 v~eg~lvel~~--~~r---K~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl------~~~~~----------- 61 (96)
T cd01228 4 VKDSFLVELVE--GSR---KLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADL------SFPSE----------- 61 (96)
T ss_pred cccceeeeehh--CCC---cceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHh------eecch-----------
Confidence 46899998653 222 46777776666655 44333321 0 2455322 22221
Q ss_pred EEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHH
Q 005831 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (675)
Q Consensus 82 ~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a 115 (675)
.|++.|+ .++.+.+-|.|.+|-+.||+++...
T Consensus 62 ~~~~~~~--~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 62 PFRIHNK--NGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhhcccc--CCceEEEEecCHHHHHHHHHHHHHH
Confidence 2666644 4889999999999999999999764
No 145
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=40.64 E-value=17 Score=44.19 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeccCCCC
Q 005831 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS 50 (675)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~ 50 (675)
-.+|||++-.. .+.+ +++|||+|.+-+|.||+-....
T Consensus 78 ~~~g~l~k~~n--~~~~-~~~r~f~l~~g~ls~~~~~~~~ 114 (799)
T KOG1737|consen 78 SLEGILLKWRN--YSKG-PSSRWFVLSGGLLSYYFDNSFS 114 (799)
T ss_pred cccceeecccc--ccCC-cccceEEecCcceeeeccCCcc
Confidence 37899999555 5555 5699999999999999854433
No 146
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.33 E-value=3.1e+02 Score=25.47 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=62.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE--EeeCCceEEEEEEEccCCCCCCcCCceEEEEEEEEEcCCC
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV--EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 283 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~~~~~~~VV--E~id~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr~~~dG 283 (675)
||....+++|++++|+.|.+. ...|-.-...+.+ .+|.| .-|.+. ++++--+-+.-.....+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s----~~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDS----LLYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHH----HHHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 467778999999999999853 2222222222222 23322 234432 122223444333333455
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 005831 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 340 (675)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT~i~~vDpkGwip~ 340 (675)
.|.+...|.. | ...-.|.|+|++.+ .|.|+|-=.+...++...
T Consensus 66 ~Y~~~~~s~~--------~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~~ 108 (120)
T PF11687_consen 66 RYAATFSSSR--------G-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQK 108 (120)
T ss_pred EEEEEEEecC--------C-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHHH
Confidence 6777666552 1 12348999999876 799999999999887753
No 147
>PF15406 PH_6: Pleckstrin homology domain
Probab=38.10 E-value=87 Score=29.13 Aligned_cols=62 Identities=21% Similarity=0.358 Sum_probs=41.4
Q ss_pred cceeeeeccCCCCCCCCCceeEEe-ecceEEecCCcccccccceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHH
Q 005831 38 DHFLKSFKSVPHSKNEDPVRSAII-DSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (675)
Q Consensus 38 g~~l~~yk~~p~~~~~~Pi~~~vi-~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~ 113 (675)
|+=|=+|-+ ..|. ..|-|.+-| |-. .|+..|- .=|.|++ +.++-+|=|.|++|-..|+-+|+
T Consensus 48 GKGLLF~~K-~~dk-a~P~GiinLadas-e~~~~g~------~kF~f~~-----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 48 GKGLLFFSK-AEDK-ASPSGIINLADAS-EPEKDGS------NKFHFKI-----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CceEEEEec-cccc-cCCcceEehhhcc-ccccCCC------ceEEEEe-----CCceeeeecCCHHHhccHHHHhh
Confidence 443334442 4444 688877777 533 6665553 4478877 44566777999999999999886
No 148
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=31.69 E-value=4.4e+02 Score=25.08 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.2
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 005831 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (675)
Q Consensus 203 ~~~~KavgvV~aspe~Vf~vL~d~d~~R~eWD~ 235 (675)
...++.+.+|++||+.||+.+.+.+ .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4679999999999999999999988 7999987
No 149
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.64 E-value=56 Score=38.17 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=65.1
Q ss_pred ceeeEEEe-------eecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeec----ceEEe--cCCccccccc
Q 005831 12 MEGWLHLI-------RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS----CIRVT--DNGRESIHRK 78 (675)
Q Consensus 12 ~eGwl~~~-------g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~----~~~V~--d~G~~~~~~~ 78 (675)
+.|+|.++ +..-.|+.=|++=|-||+|-.|+.-| + +-+-+..+.++ -+.|- ---+-+...+
T Consensus 508 k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqk-D-----ey~p~kalse~~lknavsvHHALAt~AtdY~K 581 (774)
T KOG0932|consen 508 KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQK-D-----EYKPGKALSESDLKNAVSVHHALATPATDYSK 581 (774)
T ss_pred hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeec-c-----ccCcccchhhhhhhhhhhhhhhhcCCCccccc
Confidence 77888765 33446777799999999999996665 2 22222222222 11111 0013344456
Q ss_pred ceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 79 VFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 79 ~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
..+||++- ..+-+-+-|-|.|+||+..|+..+-.+++
T Consensus 582 Kp~Vf~lr--tAdwrv~LFQaps~eEmqsWi~rIN~vAA 618 (774)
T KOG0932|consen 582 KPHVFKLR--TADWRVFLFQAPSQEEMQSWIERINLVAA 618 (774)
T ss_pred CCceEEEE--eccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence 67787774 35788999999999999999999998776
No 150
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=30.90 E-value=93 Score=29.58 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.3
Q ss_pred EeccCHHHHHHHHHHHHH
Q 005831 97 LGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 97 ~~a~s~ee~~~W~~a~~~ 114 (675)
.|..+...+++||+-|++
T Consensus 94 tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 456788899999999987
No 151
>PHA02770 hypothetical protein; Provisional
Probab=26.98 E-value=1.8e+02 Score=24.45 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=34.6
Q ss_pred EEEEecceeeeeccCCCCCCCCCceeEEeecceEEecCCcccccccceEEEEEEeCCCCCCeEEEe
Q 005831 33 YFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLG 98 (675)
Q Consensus 33 yfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y~f~i~~~~~~~~~~~~~ 98 (675)
-|..+...|+|-|++.. |-|++.|.. .-|-|.+.++++.+-.+++|
T Consensus 25 ~flvepqilfyakkrnr-----------i~gylei~~---------~hyrfelifskdnsvsitig 70 (81)
T PHA02770 25 SFLVEPQILFYAKKRNR-----------ITGYLEVNG---------RHYRFELIFSKDNSVSITIG 70 (81)
T ss_pred EEEecceeeEeeeccCe-----------EEEEEEEcC---------ceEEEEEEEecCCcEEEEEe
Confidence 47888999999885441 345666654 35999999999998888876
No 152
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=25.77 E-value=5.4e+02 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=24.1
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 005831 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (675)
Q Consensus 206 ~KavgvV~aspe~Vf~vL~d~d~~R~eWD~ 235 (675)
+.....++||++.||+++.|.+ ...+|-.
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~-~~~~W~~ 30 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPD-ALAKWLP 30 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHH-HHhhcCC
Confidence 3456679999999999999988 6888864
No 153
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.32 E-value=36 Score=41.14 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=74.6
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeccCCCCCCCCCceeEEeecce--EEecCCccc-cc-ccceEEEEE
Q 005831 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI--RVTDNGRES-IH-RKVFFIFTL 85 (675)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~--~V~d~G~~~-~~-~~~~y~f~i 85 (675)
..|.||+-.++.---+ +-|-.=|-.++-+-..+|.-...++=+.|+ ..||-+- =+-.-|.++ +| +..--||-|
T Consensus 812 grmnGwlRVyRdd~~~-stwl~~wammdl~~~~fy~~~gadple~p~--f~idlnkeqw~Lrtgqe~~~~v~dimrvfnv 888 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEA-STWLLGWAMMDLEGDDFYDMNGADPLEDPV--FLIDLNKEQWALRTGQESLTHVPDIMRVFNV 888 (1265)
T ss_pred hhcccceeeeccccch-hHHHHHHHHhhhcccchhhccCCccccCce--EEeecchhHHHHHhccccccCCcchhhhhee
Confidence 3599999888876444 347777778888888888877776546665 3334331 111113222 33 445557888
Q ss_pred EeCCCCCCeEEEeccCHHHHHHHHHHHHHHHH
Q 005831 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (675)
Q Consensus 86 ~~~~~~~~~~~~~a~s~ee~~~W~~a~~~a~~ 117 (675)
|--++..+.+.|+|-++-.|+.|-..|+.|..
T Consensus 889 liIK~~~r~l~I~ap~~~saerwA~CLq~aqk 920 (1265)
T KOG0976|consen 889 LIIKDLERLLMIAAPSPKSAERWALCLQDAQK 920 (1265)
T ss_pred eeecchhhhheeecCCCccHHHHHHHHHHHHH
Confidence 88899999999999999999999999999965
No 154
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=21.36 E-value=1.5e+02 Score=27.27 Aligned_cols=32 Identities=9% Similarity=0.367 Sum_probs=27.1
Q ss_pred ceEEEEEEeCCCCCCeEEEeccCHHHHHHHHHHHHH
Q 005831 79 VFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (675)
Q Consensus 79 ~~y~f~i~~~~~~~~~~~~~a~s~ee~~~W~~a~~~ 114 (675)
..||+++.|. -.|.|.|.+.+++..|+..|+.
T Consensus 75 nTFvLK~~~~----~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 75 YTFVLKVDDN----TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cEEEEEecCC----ceEEEEcCCHHHHHHHHHHHhc
Confidence 4588888764 4899999999999999998864
Done!