Query 005832
Match_columns 675
No_of_seqs 389 out of 2442
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005832.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005832hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgk_A Phytoene dehydrogenase; 100.0 3.2E-57 1.1E-61 506.9 38.8 477 158-653 2-493 (501)
2 3ka7_A Oxidoreductase; structu 100.0 2.5E-36 8.6E-41 330.2 42.4 409 158-648 1-424 (425)
3 3nrn_A Uncharacterized protein 100.0 2.5E-34 8.5E-39 314.2 40.6 410 158-660 1-414 (421)
4 1s3e_A Amine oxidase [flavin-c 100.0 1.3E-32 4.5E-37 308.9 36.8 436 156-653 3-456 (520)
5 2yg5_A Putrescine oxidase; oxi 100.0 1.5E-31 5.1E-36 295.0 34.9 430 157-652 5-452 (453)
6 2ivd_A PPO, PPOX, protoporphyr 100.0 3.9E-32 1.3E-36 301.8 26.1 425 155-654 14-476 (478)
7 2vvm_A Monoamine oxidase N; FA 100.0 2.5E-30 8.4E-35 288.6 32.3 431 157-655 39-489 (495)
8 1sez_A Protoporphyrinogen oxid 100.0 2.7E-30 9.2E-35 288.9 25.7 432 156-654 12-496 (504)
9 3i6d_A Protoporphyrinogen oxid 100.0 7.4E-30 2.5E-34 282.4 22.8 429 157-651 5-468 (470)
10 3nks_A Protoporphyrinogen oxid 100.0 8.2E-30 2.8E-34 282.9 17.0 429 157-650 2-473 (477)
11 1b37_A Protein (polyamine oxid 100.0 7.8E-28 2.7E-32 266.7 30.0 433 156-654 3-461 (472)
12 3lov_A Protoporphyrinogen oxid 100.0 1E-28 3.5E-33 274.0 22.4 427 157-655 4-469 (475)
13 2bcg_G Secretory pathway GDP d 100.0 1.5E-27 5.3E-32 262.6 29.7 399 154-648 8-438 (453)
14 2jae_A L-amino acid oxidase; o 100.0 2.9E-28 1E-32 271.4 22.7 425 155-654 9-488 (489)
15 2iid_A L-amino-acid oxidase; f 100.0 5E-27 1.7E-31 262.0 26.9 438 156-656 32-489 (498)
16 1d5t_A Guanine nucleotide diss 100.0 2.4E-26 8.3E-31 251.5 28.8 393 154-648 3-427 (433)
17 4gde_A UDP-galactopyranose mut 99.9 4.3E-28 1.5E-32 271.4 13.4 419 155-649 8-477 (513)
18 3k7m_X 6-hydroxy-L-nicotine ox 99.9 4.8E-25 1.6E-29 241.2 31.6 412 158-650 2-425 (431)
19 1rsg_A FMS1 protein; FAD bindi 99.9 6.6E-27 2.2E-31 262.1 16.7 281 156-486 7-309 (516)
20 2z3y_A Lysine-specific histone 99.9 9.3E-24 3.2E-28 242.8 32.7 244 376-652 391-659 (662)
21 2xag_A Lysine-specific histone 99.9 1.8E-23 6.3E-28 243.4 34.3 244 376-652 562-830 (852)
22 2b9w_A Putative aminooxidase; 99.9 3E-23 1E-27 226.5 31.3 411 156-648 5-423 (424)
23 4dsg_A UDP-galactopyranose mut 99.9 4.4E-24 1.5E-28 236.7 24.3 414 155-648 7-452 (484)
24 4gut_A Lysine-specific histone 99.9 1.2E-22 4.2E-27 235.1 24.3 425 155-649 334-775 (776)
25 3ayj_A Pro-enzyme of L-phenyla 99.9 1.6E-22 5.5E-27 229.3 22.4 276 376-670 337-698 (721)
26 3qj4_A Renalase; FAD/NAD(P)-bi 99.9 8.1E-22 2.8E-26 208.8 26.3 234 378-651 104-342 (342)
27 3p1w_A Rabgdi protein; GDI RAB 99.9 7E-21 2.4E-25 207.6 23.9 332 154-534 17-386 (475)
28 1yvv_A Amine oxidase, flavin-c 99.8 6.2E-19 2.1E-23 185.7 30.2 325 157-655 2-331 (336)
29 1vg0_A RAB proteins geranylger 99.8 1.9E-18 6.5E-23 193.6 30.4 259 223-533 237-508 (650)
30 1v0j_A UDP-galactopyranose mut 99.8 5.1E-20 1.7E-24 199.1 14.7 235 155-445 5-251 (399)
31 1i8t_A UDP-galactopyranose mut 99.8 3.2E-19 1.1E-23 190.6 16.1 253 158-484 2-262 (367)
32 2bi7_A UDP-galactopyranose mut 99.8 4.2E-18 1.4E-22 183.0 22.4 226 157-446 3-241 (384)
33 3dje_A Fructosyl amine: oxygen 99.7 5.2E-15 1.8E-19 161.8 24.2 72 377-450 148-226 (438)
34 3hdq_A UDP-galactopyranose mut 99.6 4E-15 1.4E-19 159.2 17.0 264 155-496 27-299 (397)
35 2e1m_A L-glutamate oxidase; L- 99.6 1E-14 3.5E-19 154.8 19.1 80 155-239 42-132 (376)
36 1y56_B Sarcosine oxidase; dehy 99.6 2.4E-14 8.4E-19 153.4 20.7 212 378-651 138-356 (382)
37 3nyc_A D-arginine dehydrogenas 99.6 8.4E-14 2.9E-18 148.9 21.7 66 376-443 141-209 (381)
38 3ps9_A TRNA 5-methylaminomethy 99.6 2.3E-13 7.7E-18 157.1 26.7 67 376-443 404-473 (676)
39 3oz2_A Digeranylgeranylglycero 99.6 2.6E-13 8.8E-18 145.5 25.1 64 387-450 103-169 (397)
40 3dme_A Conserved exported prot 99.6 5.2E-14 1.8E-18 149.6 18.9 59 385-443 149-209 (369)
41 1ryi_A Glycine oxidase; flavop 99.6 4.4E-14 1.5E-18 151.3 17.9 205 377-649 152-361 (382)
42 2oln_A NIKD protein; flavoprot 99.5 1E-12 3.4E-17 141.6 26.9 65 377-443 141-208 (397)
43 2gag_B Heterotetrameric sarcos 99.5 4E-13 1.4E-17 145.0 23.6 66 377-443 162-230 (405)
44 3pvc_A TRNA 5-methylaminomethy 99.5 9.9E-14 3.4E-18 160.3 19.1 67 376-443 399-469 (689)
45 3kkj_A Amine oxidase, flavin-c 99.5 2.5E-12 8.5E-17 129.4 25.6 58 157-214 2-59 (336)
46 2gf3_A MSOX, monomeric sarcosi 99.5 2E-12 6.9E-17 138.6 24.7 56 386-443 150-205 (389)
47 2uzz_A N-methyl-L-tryptophan o 99.5 1.1E-13 3.8E-18 147.6 14.2 70 377-450 137-209 (372)
48 3cgv_A Geranylgeranyl reductas 99.4 1.3E-11 4.4E-16 132.6 25.0 64 387-450 103-169 (397)
49 3axb_A Putative oxidoreductase 99.4 2.3E-12 7.8E-17 141.2 19.0 58 386-444 181-255 (448)
50 3rp8_A Flavoprotein monooxygen 99.4 7.7E-12 2.6E-16 135.2 20.9 60 387-449 128-187 (407)
51 1pj5_A N,N-dimethylglycine oxi 99.4 5.1E-11 1.8E-15 140.5 27.0 67 377-444 139-208 (830)
52 3nix_A Flavoprotein/dehydrogen 99.4 1.3E-11 4.4E-16 133.9 20.0 64 387-450 107-173 (421)
53 3ihg_A RDME; flavoenzyme, anth 99.3 7.7E-11 2.6E-15 132.1 22.4 63 387-450 121-190 (535)
54 3atr_A Conserved archaeal prot 99.3 1.3E-10 4.4E-15 127.5 23.5 64 387-450 101-169 (453)
55 4at0_A 3-ketosteroid-delta4-5a 99.3 3.3E-11 1.1E-15 134.2 17.7 60 384-443 200-264 (510)
56 3v76_A Flavoprotein; structura 99.3 1.8E-11 6.1E-16 132.5 15.1 65 377-443 123-187 (417)
57 3i3l_A Alkylhalidase CMLS; fla 99.3 2.1E-10 7.2E-15 129.4 23.3 65 386-450 128-195 (591)
58 1qo8_A Flavocytochrome C3 fuma 99.3 3.4E-11 1.1E-15 135.9 16.4 60 385-444 249-313 (566)
59 1y0p_A Fumarate reductase flav 99.3 6.6E-11 2.3E-15 133.7 18.0 58 386-443 255-317 (571)
60 2i0z_A NAD(FAD)-utilizing dehy 99.3 4E-11 1.4E-15 131.3 14.9 60 384-443 132-191 (447)
61 2qa2_A CABE, polyketide oxygen 99.3 1.2E-09 4E-14 121.2 26.9 63 387-450 108-173 (499)
62 3e1t_A Halogenase; flavoprotei 99.2 3.7E-10 1.3E-14 125.8 21.1 64 387-450 112-179 (512)
63 3da1_A Glycerol-3-phosphate de 99.2 2E-11 6.7E-16 137.4 10.5 58 386-443 170-232 (561)
64 1d4d_A Flavocytochrome C fumar 99.2 5.5E-10 1.9E-14 126.0 21.4 58 386-443 255-317 (572)
65 3fmw_A Oxygenase; mithramycin, 99.2 1.8E-10 6E-15 129.7 14.9 64 386-450 148-214 (570)
66 3nlc_A Uncharacterized protein 99.2 4.6E-10 1.6E-14 124.9 17.5 58 386-443 220-277 (549)
67 2gqf_A Hypothetical protein HI 99.2 1.7E-10 5.7E-15 124.3 13.2 58 384-443 107-168 (401)
68 3g3e_A D-amino-acid oxidase; F 99.1 3E-11 1E-15 127.8 6.7 194 386-655 142-338 (351)
69 2vdc_G Glutamate synthase [NAD 99.1 2.8E-11 9.6E-16 132.5 6.6 91 107-197 72-162 (456)
70 1c0p_A D-amino acid oxidase; a 99.1 8.5E-10 2.9E-14 117.1 16.9 40 155-194 4-43 (363)
71 4hb9_A Similarities with proba 99.1 3.9E-09 1.3E-13 113.6 21.1 51 400-450 123-173 (412)
72 2rgh_A Alpha-glycerophosphate 99.1 4.2E-10 1.4E-14 126.8 13.9 58 386-443 188-250 (571)
73 2x3n_A Probable FAD-dependent 99.0 1.1E-09 3.8E-14 117.8 14.1 65 387-451 108-174 (399)
74 2qa1_A PGAE, polyketide oxygen 99.0 2E-09 6.8E-14 119.4 16.2 63 387-450 107-172 (500)
75 2wdq_A Succinate dehydrogenase 99.0 3.1E-09 1.1E-13 120.0 18.0 59 386-444 143-207 (588)
76 3alj_A 2-methyl-3-hydroxypyrid 99.0 5.3E-09 1.8E-13 111.7 18.4 60 387-450 108-167 (379)
77 2vou_A 2,6-dihydroxypyridine h 99.0 3.7E-09 1.3E-13 113.7 16.6 60 388-450 101-160 (397)
78 2qcu_A Aerobic glycerol-3-phos 99.0 2.1E-09 7.2E-14 119.3 14.6 58 386-444 149-211 (501)
79 1rp0_A ARA6, thiazole biosynth 99.0 2.5E-09 8.6E-14 109.6 13.6 57 387-443 120-191 (284)
80 2gmh_A Electron transfer flavo 99.0 3.8E-09 1.3E-13 119.4 15.9 61 386-446 144-220 (584)
81 2bs2_A Quinol-fumarate reducta 99.0 6.6E-09 2.3E-13 118.4 17.2 59 386-444 158-221 (660)
82 2xdo_A TETX2 protein; tetracyc 99.0 3.6E-09 1.2E-13 113.8 13.2 61 387-450 129-189 (398)
83 2bry_A NEDD9 interacting prote 98.9 4.1E-10 1.4E-14 124.8 5.6 86 107-194 34-129 (497)
84 2h88_A Succinate dehydrogenase 98.9 2.3E-08 7.7E-13 113.2 19.7 59 386-444 155-218 (621)
85 4a9w_A Monooxygenase; baeyer-v 98.9 6.8E-09 2.3E-13 109.2 13.3 56 387-443 77-132 (357)
86 3c96_A Flavin-containing monoo 98.9 7.1E-09 2.4E-13 112.0 13.7 62 387-450 108-176 (410)
87 2zxi_A TRNA uridine 5-carboxym 98.9 6.9E-09 2.4E-13 116.0 13.8 56 387-443 124-180 (637)
88 2gjc_A Thiazole biosynthetic e 98.9 8.9E-09 3E-13 106.5 13.1 42 156-197 64-107 (326)
89 1k0i_A P-hydroxybenzoate hydro 98.9 7.2E-09 2.5E-13 111.2 13.0 64 387-450 104-170 (394)
90 3c4n_A Uncharacterized protein 98.9 2.6E-09 8.8E-14 115.3 9.2 56 386-443 172-236 (405)
91 3jsk_A Cypbp37 protein; octame 98.9 1.1E-08 3.6E-13 106.5 13.1 40 157-196 79-120 (344)
92 4fk1_A Putative thioredoxin re 98.9 1.1E-08 3.9E-13 105.6 12.5 39 155-194 4-42 (304)
93 4ap3_A Steroid monooxygenase; 98.9 1.3E-08 4.3E-13 114.1 13.6 43 155-197 19-61 (549)
94 3gwf_A Cyclohexanone monooxyge 98.9 7.8E-09 2.7E-13 115.5 11.8 56 387-442 88-146 (540)
95 2cul_A Glucose-inhibited divis 98.9 2.1E-08 7E-13 99.5 13.6 56 387-443 69-125 (232)
96 1chu_A Protein (L-aspartate ox 98.8 1.7E-08 6E-13 112.7 14.3 59 386-444 138-209 (540)
97 3ces_A MNMG, tRNA uridine 5-ca 98.8 1.3E-08 4.4E-13 114.3 13.1 57 387-444 125-182 (651)
98 1kf6_A Fumarate reductase flav 98.8 5.7E-08 2E-12 109.9 18.2 60 386-445 134-199 (602)
99 1jnr_A Adenylylsulfate reducta 98.8 8.2E-08 2.8E-12 109.6 19.4 57 387-443 152-218 (643)
100 2zbw_A Thioredoxin reductase; 98.8 1.7E-08 5.7E-13 105.6 12.5 51 391-442 70-120 (335)
101 3cp8_A TRNA uridine 5-carboxym 98.8 2.2E-08 7.6E-13 112.3 14.1 56 387-443 118-174 (641)
102 3ab1_A Ferredoxin--NADP reduct 98.8 1.6E-08 5.5E-13 107.0 12.0 53 390-442 78-130 (360)
103 1gte_A Dihydropyrimidine dehyd 98.8 2.2E-09 7.6E-14 128.8 5.8 90 107-196 129-227 (1025)
104 2e5v_A L-aspartate oxidase; ar 98.8 1.1E-07 3.7E-12 104.6 18.7 58 386-444 119-177 (472)
105 3lxd_A FAD-dependent pyridine 98.8 6E-08 2E-12 104.9 15.9 59 385-443 193-251 (415)
106 3o0h_A Glutathione reductase; 98.8 1.2E-07 4.2E-12 104.6 18.2 57 386-443 232-288 (484)
107 3lzw_A Ferredoxin--NADP reduct 98.8 8.4E-09 2.9E-13 107.5 8.2 52 389-441 70-121 (332)
108 1w4x_A Phenylacetone monooxyge 98.8 3.8E-08 1.3E-12 110.3 13.8 43 155-197 14-56 (542)
109 3f8d_A Thioredoxin reductase ( 98.8 3.1E-08 1.1E-12 102.6 11.8 52 390-443 74-125 (323)
110 3uox_A Otemo; baeyer-villiger 98.7 1.9E-08 6.6E-13 112.5 9.9 42 156-197 8-49 (545)
111 2weu_A Tryptophan 5-halogenase 98.7 7.1E-08 2.4E-12 107.3 13.9 59 386-445 173-232 (511)
112 3fg2_P Putative rubredoxin red 98.7 3.3E-08 1.1E-12 106.5 10.7 58 385-442 183-240 (404)
113 2r0c_A REBC; flavin adenine di 98.7 6.7E-08 2.3E-12 108.4 12.3 60 387-450 139-203 (549)
114 2aqj_A Tryptophan halogenase, 98.7 2.2E-07 7.5E-12 104.0 16.4 59 386-445 165-224 (538)
115 3itj_A Thioredoxin reductase 1 98.7 7.6E-08 2.6E-12 100.4 11.8 51 390-442 88-141 (338)
116 4dna_A Probable glutathione re 98.7 2.7E-07 9.4E-12 101.2 16.6 57 386-443 211-268 (463)
117 2ywl_A Thioredoxin reductase r 98.7 2.3E-07 7.8E-12 87.8 13.8 53 388-443 58-110 (180)
118 3gyx_A Adenylylsulfate reducta 98.7 2E-07 6.8E-12 106.2 15.6 57 387-443 167-233 (662)
119 2gv8_A Monooxygenase; FMO, FAD 98.7 1.1E-07 3.8E-12 103.8 13.0 42 156-197 5-48 (447)
120 2e4g_A Tryptophan halogenase; 98.7 1.8E-07 6E-12 105.0 14.7 58 387-445 195-254 (550)
121 1mo9_A ORF3; nucleotide bindin 98.6 3E-07 1E-11 102.4 16.1 58 386-443 255-316 (523)
122 2q0l_A TRXR, thioredoxin reduc 98.6 2.9E-07 9.9E-12 95.0 14.5 50 392-443 65-114 (311)
123 3r9u_A Thioredoxin reductase; 98.6 5E-08 1.7E-12 100.8 8.5 49 393-441 190-242 (315)
124 1trb_A Thioredoxin reductase; 98.6 2.5E-07 8.5E-12 95.9 13.5 57 386-442 184-246 (320)
125 2dkh_A 3-hydroxybenzoate hydro 98.6 1.9E-07 6.4E-12 106.7 13.6 64 387-451 142-219 (639)
126 2q7v_A Thioredoxin reductase; 98.6 2.3E-07 7.7E-12 96.6 12.9 41 156-197 7-47 (325)
127 3cty_A Thioredoxin reductase; 98.6 3.8E-07 1.3E-11 94.6 14.2 42 154-196 13-54 (319)
128 2pyx_A Tryptophan halogenase; 98.6 4E-07 1.4E-11 101.5 15.1 63 387-450 176-241 (526)
129 3iwa_A FAD-dependent pyridine 98.6 3.7E-07 1.3E-11 100.4 14.6 57 385-442 201-257 (472)
130 1xdi_A RV3303C-LPDA; reductase 98.6 4.6E-07 1.6E-11 100.3 14.9 57 386-443 223-279 (499)
131 3fbs_A Oxidoreductase; structu 98.6 4.5E-07 1.5E-11 92.6 13.7 34 157-190 2-35 (297)
132 1ges_A Glutathione reductase; 98.6 3.3E-07 1.1E-11 100.1 13.4 58 386-443 208-265 (450)
133 2r9z_A Glutathione amide reduc 98.6 4.3E-07 1.5E-11 99.6 14.3 57 386-443 207-264 (463)
134 3d1c_A Flavin-containing putat 98.6 1.8E-07 6.1E-12 99.1 10.9 55 387-443 89-143 (369)
135 3lad_A Dihydrolipoamide dehydr 98.6 1E-06 3.6E-11 96.9 17.3 57 386-443 221-280 (476)
136 2wpf_A Trypanothione reductase 98.5 3.8E-07 1.3E-11 100.9 13.4 58 386-443 235-292 (495)
137 1y56_A Hypothetical protein PH 98.5 1.9E-07 6.4E-12 103.3 10.1 49 394-443 265-313 (493)
138 1fec_A Trypanothione reductase 98.5 1.7E-06 6E-11 95.4 17.7 58 386-443 231-288 (490)
139 1vdc_A NTR, NADPH dependent th 98.5 3.5E-07 1.2E-11 95.3 10.9 51 390-443 74-124 (333)
140 3oc4_A Oxidoreductase, pyridin 98.5 3.2E-07 1.1E-11 100.3 11.0 56 386-443 189-244 (452)
141 2a87_A TRXR, TR, thioredoxin r 98.5 5.9E-07 2E-11 93.9 12.5 41 154-195 11-51 (335)
142 3fpz_A Thiazole biosynthetic e 98.5 6.8E-08 2.3E-12 100.9 5.2 42 156-197 64-107 (326)
143 3s5w_A L-ornithine 5-monooxyge 98.5 5.4E-07 1.8E-11 98.7 12.2 39 156-194 29-72 (463)
144 4b1b_A TRXR, thioredoxin reduc 98.5 1.5E-07 5.1E-12 104.8 7.6 60 384-444 261-320 (542)
145 3qvp_A Glucose oxidase; oxidor 98.5 8.5E-07 2.9E-11 99.4 13.8 51 395-445 236-295 (583)
146 1dxl_A Dihydrolipoamide dehydr 98.5 9.1E-07 3.1E-11 97.2 13.6 42 156-197 5-46 (470)
147 1fl2_A Alkyl hydroperoxide red 98.5 7.1E-07 2.4E-11 92.0 11.7 52 392-443 62-115 (310)
148 2xve_A Flavin-containing monoo 98.5 4.2E-07 1.4E-11 99.7 10.4 40 158-197 3-48 (464)
149 1hyu_A AHPF, alkyl hydroperoxi 98.4 9E-07 3.1E-11 98.5 12.8 52 392-443 273-326 (521)
150 2cdu_A NADPH oxidase; flavoenz 98.4 6.7E-07 2.3E-11 97.7 11.1 58 385-443 190-247 (452)
151 2qae_A Lipoamide, dihydrolipoy 98.4 1E-06 3.6E-11 96.6 12.6 41 157-197 2-42 (468)
152 3ef6_A Toluene 1,2-dioxygenase 98.4 2.1E-07 7.3E-12 100.4 5.9 57 386-443 185-241 (410)
153 3ics_A Coenzyme A-disulfide re 98.4 2.4E-06 8.3E-11 96.6 14.8 54 386-442 228-281 (588)
154 1ojt_A Surface protein; redox- 98.4 1.5E-06 5.1E-11 95.8 12.6 42 156-197 5-46 (482)
155 1ebd_A E3BD, dihydrolipoamide 98.4 1.3E-06 4.3E-11 95.6 11.3 40 157-197 3-42 (455)
156 3h8l_A NADH oxidase; membrane 98.4 1.4E-06 4.8E-11 93.8 11.3 52 386-442 218-269 (409)
157 3t37_A Probable dehydrogenase; 98.3 1E-06 3.5E-11 98.2 10.5 51 399-449 224-277 (526)
158 4gcm_A TRXR, thioredoxin reduc 98.3 3.9E-07 1.3E-11 94.2 5.2 41 156-197 5-45 (312)
159 3fim_B ARYL-alcohol oxidase; A 98.3 2.1E-06 7.1E-11 96.1 11.3 37 157-193 2-39 (566)
160 1pn0_A Phenol 2-monooxygenase; 98.3 4E-06 1.4E-10 96.0 13.6 36 157-192 8-48 (665)
161 1n4w_A CHOD, cholesterol oxida 98.3 4.9E-06 1.7E-10 92.1 13.4 58 388-445 223-290 (504)
162 4a5l_A Thioredoxin reductase; 98.2 5.1E-07 1.8E-11 93.2 4.6 37 155-191 2-38 (314)
163 3ntd_A FAD-dependent pyridine 98.2 4.6E-06 1.6E-10 93.7 11.5 56 386-442 192-266 (565)
164 1coy_A Cholesterol oxidase; ox 98.2 1.3E-05 4.5E-10 88.7 14.5 58 388-445 228-295 (507)
165 1q1r_A Putidaredoxin reductase 98.2 4.4E-06 1.5E-10 90.7 10.5 45 396-443 70-114 (431)
166 3klj_A NAD(FAD)-dependent dehy 98.2 2.8E-06 9.6E-11 90.7 8.8 44 396-442 72-115 (385)
167 4g6h_A Rotenone-insensitive NA 98.1 2.1E-05 7.2E-10 86.9 15.0 55 386-441 272-330 (502)
168 2jbv_A Choline oxidase; alcoho 98.1 1.5E-05 5.3E-10 89.0 13.8 55 390-444 212-274 (546)
169 3urh_A Dihydrolipoyl dehydroge 98.0 2.5E-06 8.5E-11 94.2 4.7 58 385-443 238-300 (491)
170 1o94_A Tmadh, trimethylamine d 98.0 4.1E-06 1.4E-10 97.0 6.6 43 155-197 387-429 (729)
171 2v3a_A Rubredoxin reductase; a 98.0 6.9E-05 2.4E-09 79.7 15.4 51 392-443 193-243 (384)
172 3sx6_A Sulfide-quinone reducta 98.0 1.1E-05 3.7E-10 87.7 9.0 48 393-444 66-113 (437)
173 3l8k_A Dihydrolipoyl dehydroge 98.0 2.6E-06 8.8E-11 93.4 3.6 42 156-197 3-44 (466)
174 1q1r_A Putidaredoxin reductase 98.0 6.9E-05 2.3E-09 81.2 14.8 51 392-442 197-249 (431)
175 2yqu_A 2-oxoglutarate dehydrog 98.0 8.1E-05 2.8E-09 81.2 15.0 50 393-443 215-264 (455)
176 3cgb_A Pyridine nucleotide-dis 97.9 2.1E-05 7.2E-10 86.5 10.1 36 157-192 36-73 (480)
177 3k30_A Histamine dehydrogenase 97.9 7.9E-06 2.7E-10 94.1 6.7 44 154-197 388-431 (690)
178 3hyw_A Sulfide-quinone reducta 97.9 1.1E-05 3.8E-10 87.4 6.3 42 397-442 67-108 (430)
179 3qfa_A Thioredoxin reductase 1 97.9 9E-06 3.1E-10 90.4 5.6 58 386-443 250-315 (519)
180 1zk7_A HGII, reductase, mercur 97.8 1E-05 3.5E-10 88.7 5.3 56 386-443 216-271 (467)
181 2eq6_A Pyruvate dehydrogenase 97.8 0.00018 6.1E-09 78.7 14.9 51 392-443 216-271 (464)
182 1nhp_A NADH peroxidase; oxidor 97.8 0.00012 4E-09 79.7 13.3 50 392-443 197-246 (447)
183 3dgz_A Thioredoxin reductase 2 97.8 1E-05 3.4E-10 89.3 4.7 58 386-443 225-287 (488)
184 1v59_A Dihydrolipoamide dehydr 97.8 6.4E-06 2.2E-10 90.6 2.9 57 386-443 224-287 (478)
185 4b63_A L-ornithine N5 monooxyg 97.8 2.8E-05 9.6E-10 85.9 8.0 41 155-195 37-77 (501)
186 2yqu_A 2-oxoglutarate dehydrog 97.8 1.1E-05 3.7E-10 88.2 4.5 41 157-197 1-41 (455)
187 1zmd_A Dihydrolipoyl dehydroge 97.8 9.1E-06 3.1E-10 89.2 3.9 58 386-443 220-282 (474)
188 2gqw_A Ferredoxin reductase; f 97.8 0.00023 8E-09 76.3 14.9 46 392-442 193-238 (408)
189 2hqm_A GR, grase, glutathione 97.8 9.5E-06 3.3E-10 89.2 4.0 58 386-443 226-285 (479)
190 3ihm_A Styrene monooxygenase A 97.8 1.2E-05 4E-10 87.2 4.6 35 156-190 21-55 (430)
191 3dk9_A Grase, GR, glutathione 97.8 8.8E-06 3E-10 89.5 3.6 58 386-443 228-293 (478)
192 2e1m_C L-glutamate oxidase; L- 97.8 5E-06 1.7E-10 78.6 1.0 114 523-655 33-156 (181)
193 3ic9_A Dihydrolipoamide dehydr 97.8 1.3E-05 4.5E-10 88.4 4.4 56 386-443 215-274 (492)
194 3dgh_A TRXR-1, thioredoxin red 97.7 1.8E-05 6.2E-10 87.1 5.1 57 386-442 227-288 (483)
195 3pl8_A Pyranose 2-oxidase; sub 97.7 2.1E-05 7.2E-10 89.2 5.6 42 155-196 44-85 (623)
196 2hqm_A GR, grase, glutathione 97.7 0.00025 8.6E-09 77.8 13.8 36 157-192 185-220 (479)
197 3c4a_A Probable tryptophan hyd 97.7 2.4E-05 8.1E-10 83.3 5.3 35 158-192 1-37 (381)
198 1ps9_A 2,4-dienoyl-COA reducta 97.7 5.2E-05 1.8E-09 86.9 8.5 43 155-197 371-413 (671)
199 1ebd_A E3BD, dihydrolipoamide 97.7 0.0003 1E-08 76.6 14.1 51 392-443 217-270 (455)
200 1onf_A GR, grase, glutathione 97.7 2.2E-05 7.6E-10 86.8 4.7 58 386-443 217-275 (500)
201 1lvl_A Dihydrolipoamide dehydr 97.7 1.7E-05 6E-10 86.6 3.8 55 386-443 212-268 (458)
202 1onf_A GR, grase, glutathione 97.7 0.0003 1E-08 77.6 13.8 36 157-192 176-211 (500)
203 1v59_A Dihydrolipoamide dehydr 97.6 0.00032 1.1E-08 76.9 13.3 37 157-193 183-219 (478)
204 2bc0_A NADH oxidase; flavoprot 97.6 0.00034 1.1E-08 77.0 13.4 50 392-443 242-291 (490)
205 2eq6_A Pyruvate dehydrogenase 97.6 2.1E-05 7.3E-10 86.0 3.6 40 157-197 6-45 (464)
206 2a8x_A Dihydrolipoyl dehydroge 97.6 2.9E-05 9.8E-10 85.0 4.1 57 386-443 212-271 (464)
207 1ojt_A Surface protein; redox- 97.6 0.00035 1.2E-08 76.7 12.5 51 392-443 232-286 (482)
208 1zmd_A Dihydrolipoyl dehydroge 97.5 0.00061 2.1E-08 74.6 13.7 36 157-192 178-213 (474)
209 3g5s_A Methylenetetrahydrofola 97.5 7.8E-05 2.7E-09 78.0 5.9 38 158-195 2-39 (443)
210 1m6i_A Programmed cell death p 97.5 0.0009 3.1E-08 73.6 14.6 51 392-443 232-282 (493)
211 3cgb_A Pyridine nucleotide-dis 97.5 0.00066 2.2E-08 74.5 13.2 50 392-443 233-282 (480)
212 2a8x_A Dihydrolipoyl dehydroge 97.5 0.00075 2.6E-08 73.6 13.7 36 157-192 171-206 (464)
213 1lvl_A Dihydrolipoamide dehydr 97.5 0.00053 1.8E-08 74.7 12.3 36 157-192 171-206 (458)
214 1lqt_A FPRA; NADP+ derivative, 97.5 6.4E-05 2.2E-09 82.0 4.6 41 157-197 3-50 (456)
215 2qae_A Lipoamide, dihydrolipoy 97.4 0.00094 3.2E-08 72.9 13.8 51 392-443 221-276 (468)
216 2gag_A Heterotetrameric sarcos 97.4 7.5E-05 2.6E-09 89.0 5.2 42 156-197 127-168 (965)
217 2x8g_A Thioredoxin glutathione 97.4 6.6E-05 2.3E-09 84.9 4.5 58 386-443 326-395 (598)
218 3q9t_A Choline dehydrogenase a 97.4 8.6E-05 3E-09 83.1 5.2 50 397-446 217-273 (577)
219 3kd9_A Coenzyme A disulfide re 97.4 0.00012 4E-09 79.7 5.5 54 386-442 190-243 (449)
220 1zk7_A HGII, reductase, mercur 97.4 0.0012 4.2E-08 72.0 13.7 35 157-191 176-210 (467)
221 3urh_A Dihydrolipoyl dehydroge 97.4 0.0014 4.8E-08 72.0 14.2 36 157-192 198-233 (491)
222 1dxl_A Dihydrolipoamide dehydr 97.4 0.00072 2.5E-08 73.9 11.5 51 392-443 224-279 (470)
223 1kdg_A CDH, cellobiose dehydro 97.4 0.00012 4E-09 81.9 5.3 57 389-445 198-263 (546)
224 1cjc_A Protein (adrenodoxin re 97.3 0.00015 5E-09 79.2 5.6 42 156-197 5-48 (460)
225 3dgh_A TRXR-1, thioredoxin red 97.3 0.0013 4.5E-08 72.1 13.3 33 157-189 187-219 (483)
226 3h28_A Sulfide-quinone reducta 97.3 0.00012 4.1E-09 79.2 4.5 38 158-195 3-42 (430)
227 1xhc_A NADH oxidase /nitrite r 97.3 0.00057 1.9E-08 72.2 9.4 46 392-443 189-234 (367)
228 2gqw_A Ferredoxin reductase; f 97.3 0.00018 6.1E-09 77.3 5.6 36 156-191 6-43 (408)
229 3ic9_A Dihydrolipoamide dehydr 97.3 0.0017 5.9E-08 71.3 13.4 36 157-192 174-209 (492)
230 3itj_A Thioredoxin reductase 1 97.3 0.001 3.5E-08 68.7 10.7 43 399-441 222-269 (338)
231 2bc0_A NADH oxidase; flavoprot 97.2 0.0002 6.9E-09 78.8 5.4 36 157-192 35-73 (490)
232 2v3a_A Rubredoxin reductase; a 97.2 0.0002 6.9E-09 76.1 4.8 35 156-190 3-39 (384)
233 1nhp_A NADH peroxidase; oxidor 97.2 0.00023 7.9E-09 77.3 5.3 36 158-193 1-38 (447)
234 3ab1_A Ferredoxin--NADP reduct 97.2 0.0016 5.4E-08 68.2 11.6 47 396-442 212-262 (360)
235 1m6i_A Programmed cell death p 97.2 0.00024 8.1E-09 78.3 5.2 40 154-193 8-49 (493)
236 1ju2_A HydroxynitrIle lyase; f 97.2 0.00011 3.7E-09 81.9 2.5 54 392-445 200-263 (536)
237 3uox_A Otemo; baeyer-villiger 97.2 0.0054 1.8E-07 68.2 16.3 36 156-191 184-219 (545)
238 3dk9_A Grase, GR, glutathione 97.2 0.003 1E-07 69.1 13.9 35 157-191 187-221 (478)
239 3cty_A Thioredoxin reductase; 97.2 0.0017 5.9E-08 66.7 11.1 46 397-442 201-251 (319)
240 3dgz_A Thioredoxin reductase 2 97.1 0.0029 9.7E-08 69.5 13.3 34 157-190 185-218 (488)
241 2zbw_A Thioredoxin reductase; 97.1 0.0025 8.5E-08 65.9 12.1 48 394-442 199-251 (335)
242 3gwf_A Cyclohexanone monooxyge 97.1 0.0082 2.8E-07 66.7 16.8 36 156-191 177-212 (540)
243 2q0l_A TRXR, thioredoxin reduc 97.1 0.0034 1.2E-07 64.0 12.8 43 399-441 192-239 (311)
244 4eqs_A Coenzyme A disulfide re 97.1 0.002 6.7E-08 69.7 11.2 47 392-443 194-240 (437)
245 1xhc_A NADH oxidase /nitrite r 97.1 0.00033 1.1E-08 74.0 4.6 34 157-191 8-41 (367)
246 1fl2_A Alkyl hydroperoxide red 97.0 0.0031 1.1E-07 64.3 11.5 43 399-441 193-240 (310)
247 4ap3_A Steroid monooxygenase; 96.9 0.01 3.6E-07 66.0 15.5 36 156-191 190-225 (549)
248 3d1c_A Flavin-containing putat 96.9 0.005 1.7E-07 64.5 12.3 51 392-443 220-272 (369)
249 4eqs_A Coenzyme A disulfide re 96.9 0.0006 2E-08 73.8 5.1 35 158-192 1-37 (437)
250 3s5w_A L-ornithine 5-monooxyge 96.8 0.013 4.3E-07 63.7 14.6 36 156-191 226-263 (463)
251 3vrd_B FCCB subunit, flavocyto 96.8 0.00087 3E-08 71.5 5.1 51 390-441 206-256 (401)
252 3kd9_A Coenzyme A disulfide re 96.8 0.0059 2E-07 66.1 11.8 36 157-192 148-183 (449)
253 2x8g_A Thioredoxin glutathione 96.8 0.012 4E-07 66.3 14.5 32 158-189 287-318 (598)
254 2q7v_A Thioredoxin reductase; 96.8 0.0079 2.7E-07 61.8 11.9 34 157-190 152-185 (325)
255 3f8d_A Thioredoxin reductase ( 96.7 0.0097 3.3E-07 60.7 11.8 34 157-190 154-187 (323)
256 1vdc_A NTR, NADPH dependent th 96.7 0.0072 2.4E-07 62.3 10.9 34 157-190 159-192 (333)
257 3k30_A Histamine dehydrogenase 96.6 0.0034 1.2E-07 72.0 8.8 35 157-191 523-559 (690)
258 1gpe_A Protein (glucose oxidas 96.6 0.0012 4.1E-08 74.2 4.7 37 156-192 23-60 (587)
259 3qfa_A Thioredoxin reductase 1 96.6 0.023 8E-07 62.7 14.7 32 158-189 211-242 (519)
260 1hyu_A AHPF, alkyl hydroperoxi 96.6 0.0085 2.9E-07 66.3 11.1 43 399-441 404-451 (521)
261 3l8k_A Dihydrolipoyl dehydroge 96.5 0.016 5.6E-07 62.9 13.1 35 157-191 172-206 (466)
262 3lzw_A Ferredoxin--NADP reduct 96.4 0.0071 2.4E-07 62.1 9.0 34 157-190 154-187 (332)
263 2gag_A Heterotetrameric sarcos 95.7 0.021 7.1E-07 68.0 9.2 46 397-442 327-382 (965)
264 1gte_A Dihydropyrimidine dehyd 95.6 0.063 2.2E-06 64.3 13.1 33 158-190 333-366 (1025)
265 2g1u_A Hypothetical protein TM 95.5 0.016 5.5E-07 52.6 5.6 38 154-191 16-53 (155)
266 3fwz_A Inner membrane protein 95.0 0.03 1E-06 49.9 5.7 36 156-191 6-41 (140)
267 1lss_A TRK system potassium up 94.8 0.025 8.5E-07 49.9 4.8 34 157-190 4-37 (140)
268 3llv_A Exopolyphosphatase-rela 94.6 0.032 1.1E-06 49.6 4.8 34 158-191 7-40 (141)
269 3ic5_A Putative saccharopine d 94.2 0.048 1.7E-06 46.3 5.0 34 157-190 5-39 (118)
270 3klj_A NAD(FAD)-dependent dehy 94.1 0.045 1.6E-06 57.8 5.4 36 158-193 147-182 (385)
271 3dfz_A SIRC, precorrin-2 dehyd 94.0 0.39 1.3E-05 46.3 11.4 35 156-190 30-64 (223)
272 4gcm_A TRXR, thioredoxin reduc 93.9 0.044 1.5E-06 55.8 4.8 34 158-191 146-179 (312)
273 1id1_A Putative potassium chan 93.7 0.073 2.5E-06 48.0 5.5 34 157-190 3-36 (153)
274 2e1m_B L-glutamate oxidase; L- 93.3 0.1 3.4E-06 45.8 5.4 57 428-486 4-60 (130)
275 3c85_A Putative glutathione-re 93.2 0.086 2.9E-06 49.1 5.1 34 157-190 39-73 (183)
276 2x5o_A UDP-N-acetylmuramoylala 93.1 0.055 1.9E-06 58.3 4.2 37 158-194 6-42 (439)
277 3ado_A Lambda-crystallin; L-gu 93.1 0.065 2.2E-06 54.8 4.5 34 157-190 6-39 (319)
278 3lk7_A UDP-N-acetylmuramoylala 92.9 0.1 3.5E-06 56.4 5.9 34 157-190 9-42 (451)
279 4a5l_A Thioredoxin reductase; 92.9 0.077 2.6E-06 53.8 4.7 34 157-190 152-185 (314)
280 4e12_A Diketoreductase; oxidor 92.9 0.096 3.3E-06 52.7 5.2 33 158-190 5-37 (283)
281 2hmt_A YUAA protein; RCK, KTN, 92.8 0.095 3.2E-06 46.2 4.6 33 158-190 7-39 (144)
282 1ges_A Glutathione reductase; 92.7 0.11 3.9E-06 55.9 5.9 36 157-192 167-202 (450)
283 1f0y_A HCDH, L-3-hydroxyacyl-C 92.7 0.11 3.6E-06 52.9 5.3 33 158-190 16-48 (302)
284 1kdg_A CDH, cellobiose dehydro 92.6 0.15 5.3E-06 56.4 7.1 37 156-192 6-42 (546)
285 3l4b_C TRKA K+ channel protien 92.1 0.099 3.4E-06 50.3 4.0 33 159-191 2-34 (218)
286 2r9z_A Glutathione amide reduc 92.0 0.16 5.3E-06 55.1 5.9 35 158-192 167-201 (463)
287 3i83_A 2-dehydropantoate 2-red 91.8 0.15 5E-06 52.3 5.2 33 158-190 3-35 (320)
288 2dpo_A L-gulonate 3-dehydrogen 91.7 0.12 4.2E-06 52.9 4.5 34 158-191 7-40 (319)
289 1zej_A HBD-9, 3-hydroxyacyl-CO 91.5 0.14 4.9E-06 51.6 4.6 34 156-190 11-44 (293)
290 2ewd_A Lactate dehydrogenase,; 91.5 0.18 6.3E-06 51.5 5.5 34 157-190 4-38 (317)
291 1pzg_A LDH, lactate dehydrogen 91.4 0.22 7.5E-06 51.3 6.0 34 157-190 9-43 (331)
292 3ef6_A Toluene 1,2-dioxygenase 91.3 0.2 7E-06 53.1 5.9 37 157-193 143-179 (410)
293 3hn2_A 2-dehydropantoate 2-red 91.2 0.16 5.5E-06 51.8 4.7 33 158-190 3-35 (312)
294 3doj_A AT3G25530, dehydrogenas 91.2 0.21 7.3E-06 50.8 5.6 37 155-191 19-55 (310)
295 1ks9_A KPA reductase;, 2-dehyd 91.1 0.2 6.8E-06 50.2 5.3 33 159-191 2-34 (291)
296 2raf_A Putative dinucleotide-b 91.1 0.22 7.4E-06 47.6 5.2 35 157-191 19-53 (209)
297 2y0c_A BCEC, UDP-glucose dehyd 91.0 0.17 5.8E-06 55.0 4.8 34 157-190 8-41 (478)
298 2ew2_A 2-dehydropantoate 2-red 90.9 0.18 6.1E-06 51.2 4.7 33 158-190 4-36 (316)
299 4dio_A NAD(P) transhydrogenase 90.8 0.24 8.2E-06 52.2 5.6 34 157-190 190-223 (405)
300 3gg2_A Sugar dehydrogenase, UD 90.6 0.2 6.7E-06 54.0 4.8 33 158-190 3-35 (450)
301 3k6j_A Protein F01G10.3, confi 90.6 0.25 8.7E-06 53.0 5.6 35 157-191 54-88 (460)
302 3eag_A UDP-N-acetylmuramate:L- 90.5 0.29 9.8E-06 50.3 5.8 34 158-191 5-39 (326)
303 3vtf_A UDP-glucose 6-dehydroge 90.4 0.26 9E-06 52.6 5.6 38 153-190 17-54 (444)
304 3g79_A NDP-N-acetyl-D-galactos 90.3 0.26 8.9E-06 53.3 5.5 35 157-191 18-54 (478)
305 3p2y_A Alanine dehydrogenase/p 90.3 0.25 8.4E-06 51.6 5.0 35 156-190 183-217 (381)
306 1lld_A L-lactate dehydrogenase 90.3 0.26 8.8E-06 50.4 5.2 34 157-190 7-42 (319)
307 1bg6_A N-(1-D-carboxylethyl)-L 90.3 0.25 8.5E-06 51.3 5.2 33 158-190 5-37 (359)
308 3g0o_A 3-hydroxyisobutyrate de 90.2 0.23 7.9E-06 50.4 4.8 34 157-190 7-40 (303)
309 3ghy_A Ketopantoate reductase 90.2 0.26 8.8E-06 50.9 5.2 32 158-189 4-35 (335)
310 3k96_A Glycerol-3-phosphate de 90.0 0.23 8E-06 51.7 4.7 34 157-190 29-62 (356)
311 3qha_A Putative oxidoreductase 90.0 0.21 7.3E-06 50.5 4.3 35 157-191 15-49 (296)
312 4a7p_A UDP-glucose dehydrogena 89.9 0.29 1E-05 52.5 5.4 35 157-191 8-42 (446)
313 1t2d_A LDH-P, L-lactate dehydr 89.9 0.35 1.2E-05 49.6 5.8 34 157-190 4-38 (322)
314 2cdu_A NADPH oxidase; flavoenz 89.8 0.29 9.9E-06 52.7 5.4 36 157-192 149-184 (452)
315 3g17_A Similar to 2-dehydropan 89.8 0.21 7.3E-06 50.4 4.1 33 158-190 3-35 (294)
316 3dtt_A NADP oxidoreductase; st 89.8 0.29 1E-05 47.9 5.0 35 156-190 18-52 (245)
317 1z82_A Glycerol-3-phosphate de 89.7 0.3 1E-05 50.3 5.2 34 157-190 14-47 (335)
318 3lxd_A FAD-dependent pyridine 89.7 0.35 1.2E-05 51.3 5.9 37 157-193 152-188 (415)
319 1kyq_A Met8P, siroheme biosynt 89.6 0.2 6.9E-06 49.9 3.6 34 157-190 13-46 (274)
320 4e21_A 6-phosphogluconate dehy 89.6 0.27 9.4E-06 51.2 4.8 36 155-190 20-55 (358)
321 4g65_A TRK system potassium up 89.6 0.14 4.7E-06 55.4 2.6 36 156-191 2-37 (461)
322 3pid_A UDP-glucose 6-dehydroge 89.5 0.25 8.6E-06 52.6 4.5 36 155-191 34-69 (432)
323 3ntd_A FAD-dependent pyridine 89.5 0.36 1.2E-05 53.6 6.0 35 158-192 152-186 (565)
324 1zcj_A Peroxisomal bifunctiona 89.4 0.3 1E-05 52.8 5.1 34 157-190 37-70 (463)
325 3pef_A 6-phosphogluconate dehy 89.4 0.33 1.1E-05 48.7 5.2 34 158-191 2-35 (287)
326 2hjr_A Malate dehydrogenase; m 89.3 0.38 1.3E-05 49.5 5.6 33 158-190 15-48 (328)
327 3fg2_P Putative rubredoxin red 89.3 0.39 1.4E-05 50.7 5.9 37 157-193 142-178 (404)
328 3l6d_A Putative oxidoreductase 89.2 0.4 1.4E-05 48.7 5.5 34 157-190 9-42 (306)
329 2xve_A Flavin-containing monoo 89.1 0.34 1.2E-05 52.4 5.3 35 157-191 197-231 (464)
330 1trb_A Thioredoxin reductase; 89.0 0.31 1.1E-05 49.3 4.7 36 157-192 145-180 (320)
331 1pjq_A CYSG, siroheme synthase 89.0 2.8 9.6E-05 45.0 12.4 127 157-285 12-160 (457)
332 1mv8_A GMD, GDP-mannose 6-dehy 88.9 0.29 9.9E-06 52.5 4.5 32 159-190 2-33 (436)
333 2a87_A TRXR, TR, thioredoxin r 88.8 0.33 1.1E-05 49.7 4.8 35 157-191 155-189 (335)
334 4dll_A 2-hydroxy-3-oxopropiona 88.7 0.36 1.2E-05 49.3 5.0 34 157-190 31-64 (320)
335 3oj0_A Glutr, glutamyl-tRNA re 88.7 0.18 6E-06 44.9 2.2 34 157-190 21-54 (144)
336 4b1b_A TRXR, thioredoxin reduc 88.7 0.45 1.5E-05 52.5 5.9 35 157-191 223-257 (542)
337 3oc4_A Oxidoreductase, pyridin 88.7 0.45 1.5E-05 51.1 5.9 36 157-192 147-182 (452)
338 3tl2_A Malate dehydrogenase; c 88.6 0.47 1.6E-05 48.4 5.6 33 157-189 8-41 (315)
339 3ego_A Probable 2-dehydropanto 88.5 0.39 1.3E-05 48.8 5.0 32 158-190 3-34 (307)
340 2v6b_A L-LDH, L-lactate dehydr 88.4 0.42 1.4E-05 48.6 5.0 32 159-190 2-35 (304)
341 3lad_A Dihydrolipoamide dehydr 88.3 0.5 1.7E-05 51.1 6.0 36 157-192 180-215 (476)
342 1x13_A NAD(P) transhydrogenase 88.3 0.44 1.5E-05 50.4 5.3 34 157-190 172-205 (401)
343 2wpf_A Trypanothione reductase 88.2 0.46 1.6E-05 51.8 5.6 36 157-192 191-229 (495)
344 2uyy_A N-PAC protein; long-cha 88.2 0.53 1.8E-05 47.9 5.7 35 157-191 30-64 (316)
345 3hwr_A 2-dehydropantoate 2-red 88.1 0.39 1.3E-05 49.1 4.7 33 157-190 19-51 (318)
346 2vns_A Metalloreductase steap3 88.1 0.48 1.6E-05 45.4 5.1 34 157-190 28-61 (215)
347 1fec_A Trypanothione reductase 88.1 0.47 1.6E-05 51.6 5.6 36 157-192 187-225 (490)
348 1jw9_B Molybdopterin biosynthe 88.0 0.43 1.5E-05 46.9 4.8 34 158-191 32-66 (249)
349 1nyt_A Shikimate 5-dehydrogena 88.0 0.5 1.7E-05 47.1 5.3 34 157-190 119-152 (271)
350 3l9w_A Glutathione-regulated p 88.0 0.41 1.4E-05 50.9 4.8 35 157-191 4-38 (413)
351 3pdu_A 3-hydroxyisobutyrate de 88.0 0.38 1.3E-05 48.3 4.4 34 158-191 2-35 (287)
352 1l7d_A Nicotinamide nucleotide 87.8 0.52 1.8E-05 49.5 5.6 35 156-190 171-205 (384)
353 1txg_A Glycerol-3-phosphate de 87.7 0.42 1.4E-05 49.0 4.7 30 159-188 2-31 (335)
354 2h78_A Hibadh, 3-hydroxyisobut 87.7 0.43 1.5E-05 48.3 4.7 33 158-190 4-36 (302)
355 2q3e_A UDP-glucose 6-dehydroge 87.5 0.42 1.4E-05 51.8 4.7 33 158-190 6-40 (467)
356 3cky_A 2-hydroxymethyl glutara 87.5 0.45 1.5E-05 48.0 4.7 34 157-190 4-37 (301)
357 3mog_A Probable 3-hydroxybutyr 87.5 0.41 1.4E-05 52.0 4.6 34 158-191 6-39 (483)
358 2gv8_A Monooxygenase; FMO, FAD 87.4 0.4 1.4E-05 51.4 4.5 36 157-192 212-248 (447)
359 3phh_A Shikimate dehydrogenase 87.4 0.61 2.1E-05 46.3 5.4 35 157-191 118-152 (269)
360 3gvi_A Malate dehydrogenase; N 87.4 0.59 2E-05 47.8 5.5 34 157-190 7-41 (324)
361 3fbs_A Oxidoreductase; structu 87.4 0.64 2.2E-05 46.2 5.7 47 390-441 178-224 (297)
362 2vdc_G Glutamate synthase [NAD 87.3 0.56 1.9E-05 50.6 5.5 36 156-191 263-299 (456)
363 1evy_A Glycerol-3-phosphate de 87.3 0.35 1.2E-05 50.5 3.8 32 159-190 17-48 (366)
364 3ics_A Coenzyme A-disulfide re 87.3 0.57 1.9E-05 52.3 5.8 37 157-193 187-223 (588)
365 1pjc_A Protein (L-alanine dehy 87.3 0.58 2E-05 48.7 5.5 33 158-190 168-200 (361)
366 1y6j_A L-lactate dehydrogenase 87.1 0.58 2E-05 47.8 5.3 34 157-190 7-42 (318)
367 1guz_A Malate dehydrogenase; o 87.1 0.59 2E-05 47.5 5.3 32 159-190 2-35 (310)
368 1mo9_A ORF3; nucleotide bindin 87.1 0.55 1.9E-05 51.6 5.4 36 158-193 215-250 (523)
369 4ezb_A Uncharacterized conserv 87.0 0.51 1.8E-05 48.2 4.8 34 157-190 24-58 (317)
370 2qyt_A 2-dehydropantoate 2-red 86.9 0.43 1.5E-05 48.5 4.1 31 158-188 9-45 (317)
371 1jay_A Coenzyme F420H2:NADP+ o 86.8 0.59 2E-05 44.4 4.8 32 159-190 2-34 (212)
372 1ur5_A Malate dehydrogenase; o 86.6 0.66 2.2E-05 47.2 5.3 33 158-190 3-36 (309)
373 2a9f_A Putative malic enzyme ( 86.6 0.61 2.1E-05 48.6 5.1 35 156-190 187-222 (398)
374 3pqe_A L-LDH, L-lactate dehydr 86.6 0.65 2.2E-05 47.6 5.3 34 157-190 5-40 (326)
375 3qsg_A NAD-binding phosphogluc 86.6 0.54 1.9E-05 47.9 4.7 33 157-189 24-57 (312)
376 1xdi_A RV3303C-LPDA; reductase 86.6 0.67 2.3E-05 50.5 5.8 36 157-192 182-217 (499)
377 2eez_A Alanine dehydrogenase; 86.4 0.69 2.4E-05 48.3 5.5 34 157-190 166-199 (369)
378 1p77_A Shikimate 5-dehydrogena 86.3 0.54 1.8E-05 46.9 4.4 34 157-190 119-152 (272)
379 3iwa_A FAD-dependent pyridine 86.3 0.68 2.3E-05 50.0 5.6 36 157-192 159-195 (472)
380 1dlj_A UDP-glucose dehydrogena 86.2 0.42 1.4E-05 50.6 3.7 31 159-190 2-32 (402)
381 1vl6_A Malate oxidoreductase; 86.2 0.67 2.3E-05 48.2 5.1 34 156-189 191-225 (388)
382 2pv7_A T-protein [includes: ch 86.0 0.86 2.9E-05 46.0 5.8 33 158-190 22-55 (298)
383 3r9u_A Thioredoxin reductase; 85.9 0.69 2.4E-05 46.4 5.1 36 157-192 147-182 (315)
384 3dfu_A Uncharacterized protein 85.9 0.31 1.1E-05 47.2 2.3 33 157-189 6-38 (232)
385 2egg_A AROE, shikimate 5-dehyd 85.8 0.69 2.4E-05 46.7 5.0 34 157-190 141-175 (297)
386 1a5z_A L-lactate dehydrogenase 85.8 0.63 2.2E-05 47.5 4.7 32 159-190 2-35 (319)
387 3ojo_A CAP5O; rossmann fold, c 85.8 0.57 2E-05 49.9 4.5 35 157-191 11-45 (431)
388 4huj_A Uncharacterized protein 85.8 0.4 1.4E-05 46.1 3.0 33 158-190 24-57 (220)
389 3ggo_A Prephenate dehydrogenas 85.7 0.8 2.7E-05 46.7 5.4 34 157-190 33-68 (314)
390 2f1k_A Prephenate dehydrogenas 85.5 0.67 2.3E-05 46.1 4.7 32 159-190 2-33 (279)
391 3vrd_B FCCB subunit, flavocyto 85.5 0.35 1.2E-05 51.0 2.7 36 157-192 2-39 (401)
392 3ktd_A Prephenate dehydrogenas 85.5 0.72 2.5E-05 47.6 5.0 34 157-190 8-41 (341)
393 2vhw_A Alanine dehydrogenase; 85.3 0.83 2.9E-05 47.8 5.5 35 156-190 167-201 (377)
394 1yqg_A Pyrroline-5-carboxylate 85.3 0.72 2.5E-05 45.4 4.8 32 159-190 2-34 (263)
395 3p7m_A Malate dehydrogenase; p 85.3 0.93 3.2E-05 46.3 5.6 34 157-190 5-39 (321)
396 3e8x_A Putative NAD-dependent 85.2 0.9 3.1E-05 43.7 5.3 36 156-191 20-56 (236)
397 4gwg_A 6-phosphogluconate dehy 85.2 0.8 2.7E-05 49.6 5.3 35 157-191 4-38 (484)
398 3ldh_A Lactate dehydrogenase; 85.2 0.9 3.1E-05 46.5 5.4 35 156-190 20-56 (330)
399 2wtb_A MFP2, fatty acid multif 85.1 0.68 2.3E-05 52.9 5.0 34 157-190 312-345 (725)
400 3gpi_A NAD-dependent epimerase 85.1 0.94 3.2E-05 45.0 5.6 34 158-191 4-37 (286)
401 3h28_A Sulfide-quinone reducta 85.1 0.53 1.8E-05 50.2 3.9 51 386-441 200-254 (430)
402 4dna_A Probable glutathione re 85.1 0.92 3.2E-05 48.8 5.9 36 157-192 170-205 (463)
403 2zyd_A 6-phosphogluconate dehy 85.1 0.68 2.3E-05 50.2 4.7 35 156-190 14-48 (480)
404 3o0h_A Glutathione reductase; 85.0 0.93 3.2E-05 49.2 5.9 36 157-192 191-226 (484)
405 2o3j_A UDP-glucose 6-dehydroge 85.0 0.65 2.2E-05 50.4 4.6 33 158-190 10-44 (481)
406 1oju_A MDH, malate dehydrogena 85.0 0.68 2.3E-05 46.7 4.4 32 159-190 2-35 (294)
407 2p4q_A 6-phosphogluconate dehy 84.9 0.83 2.8E-05 49.7 5.4 34 157-190 10-43 (497)
408 2izz_A Pyrroline-5-carboxylate 84.9 0.74 2.5E-05 47.1 4.7 34 157-190 22-59 (322)
409 4ffl_A PYLC; amino acid, biosy 84.9 0.95 3.3E-05 47.0 5.6 34 158-191 2-35 (363)
410 3ew7_A LMO0794 protein; Q8Y8U8 84.8 0.96 3.3E-05 42.8 5.3 32 159-190 2-34 (221)
411 2gf2_A Hibadh, 3-hydroxyisobut 84.6 0.81 2.8E-05 45.9 4.8 32 159-190 2-33 (296)
412 1hyh_A L-hicdh, L-2-hydroxyiso 84.6 0.77 2.6E-05 46.6 4.7 33 158-190 2-36 (309)
413 1ju2_A HydroxynitrIle lyase; f 84.4 0.55 1.9E-05 51.8 3.7 37 156-193 25-61 (536)
414 2i6t_A Ubiquitin-conjugating e 84.3 0.86 3E-05 46.1 4.9 35 157-191 14-50 (303)
415 4gbj_A 6-phosphogluconate dehy 84.2 0.79 2.7E-05 46.3 4.5 34 158-191 6-39 (297)
416 3c24_A Putative oxidoreductase 84.2 1.1 3.9E-05 44.7 5.7 33 158-190 12-45 (286)
417 1x0v_A GPD-C, GPDH-C, glycerol 84.1 0.61 2.1E-05 48.3 3.7 34 158-191 9-49 (354)
418 1ldn_A L-lactate dehydrogenase 84.1 1.1 3.6E-05 45.8 5.4 34 157-190 6-41 (316)
419 2rcy_A Pyrroline carboxylate r 84.1 0.93 3.2E-05 44.6 4.9 34 158-191 5-42 (262)
420 3ond_A Adenosylhomocysteinase; 84.0 0.88 3E-05 49.0 4.9 35 156-190 264-298 (488)
421 1vpd_A Tartronate semialdehyde 84.0 0.89 3E-05 45.7 4.8 33 158-190 6-38 (299)
422 3nep_X Malate dehydrogenase; h 83.9 0.91 3.1E-05 46.2 4.8 33 158-190 1-35 (314)
423 3fpz_A Thiazole biosynthetic e 83.9 0.55 1.9E-05 48.0 3.2 39 614-652 280-325 (326)
424 1yj8_A Glycerol-3-phosphate de 83.9 0.75 2.6E-05 48.1 4.3 34 158-191 22-62 (375)
425 3tnl_A Shikimate dehydrogenase 83.8 1.1 3.8E-05 45.5 5.4 34 156-189 153-187 (315)
426 3h2s_A Putative NADH-flavin re 83.7 1.1 3.7E-05 42.5 5.1 32 159-190 2-34 (224)
427 4aj2_A L-lactate dehydrogenase 83.7 1.2 4E-05 45.7 5.6 35 156-190 18-54 (331)
428 3ius_A Uncharacterized conserv 83.7 0.93 3.2E-05 45.0 4.8 33 158-190 6-38 (286)
429 3q9t_A Choline dehydrogenase a 83.7 1.1 3.6E-05 49.9 5.6 36 156-191 5-41 (577)
430 2pgd_A 6-phosphogluconate dehy 83.5 0.98 3.3E-05 49.0 5.2 33 158-190 3-35 (482)
431 2rir_A Dipicolinate synthase, 83.5 1.2 4E-05 45.0 5.4 35 156-190 156-190 (300)
432 3d4o_A Dipicolinate synthase s 83.5 1.2 4E-05 44.8 5.4 35 156-190 154-188 (293)
433 3vku_A L-LDH, L-lactate dehydr 83.4 1.1 3.8E-05 45.8 5.2 34 157-190 9-44 (326)
434 3gt0_A Pyrroline-5-carboxylate 83.3 0.99 3.4E-05 44.1 4.7 33 158-190 3-39 (247)
435 3dhn_A NAD-dependent epimerase 83.3 0.89 3.1E-05 43.3 4.3 34 158-191 5-39 (227)
436 1wdk_A Fatty oxidation complex 83.3 0.82 2.8E-05 52.2 4.6 34 157-190 314-347 (715)
437 3jyo_A Quinate/shikimate dehyd 83.3 1.2 4.1E-05 44.6 5.4 34 157-190 127-161 (283)
438 3d0o_A L-LDH 1, L-lactate dehy 83.2 1.1 3.8E-05 45.7 5.1 34 157-190 6-41 (317)
439 2hk9_A Shikimate dehydrogenase 83.2 1 3.4E-05 44.9 4.7 34 157-190 129-162 (275)
440 2g5c_A Prephenate dehydrogenas 83.1 1.1 3.8E-05 44.6 5.0 32 159-190 3-36 (281)
441 1hdo_A Biliverdin IX beta redu 83.1 1.4 4.9E-05 40.9 5.6 34 158-191 4-38 (206)
442 3don_A Shikimate dehydrogenase 83.1 0.74 2.5E-05 46.0 3.7 35 157-191 117-152 (277)
443 3u62_A Shikimate dehydrogenase 83.1 1.2 4.1E-05 43.8 5.2 32 159-190 110-142 (253)
444 3fbt_A Chorismate mutase and s 83.1 1.2 4.1E-05 44.6 5.2 34 157-190 122-156 (282)
445 3pwz_A Shikimate dehydrogenase 82.9 1.3 4.3E-05 44.1 5.3 34 157-190 120-154 (272)
446 2aef_A Calcium-gated potassium 82.7 0.49 1.7E-05 45.8 2.2 34 157-191 9-42 (234)
447 2cvz_A Dehydrogenase, 3-hydrox 82.7 0.96 3.3E-05 45.1 4.4 31 159-190 3-33 (289)
448 4b4o_A Epimerase family protei 82.6 1.4 4.8E-05 44.1 5.6 34 158-191 1-35 (298)
449 4id9_A Short-chain dehydrogena 82.6 1.1 3.9E-05 45.7 5.1 38 155-192 17-55 (347)
450 1edz_A 5,10-methylenetetrahydr 82.5 1.1 3.9E-05 45.4 4.8 34 156-189 176-210 (320)
451 1pgj_A 6PGDH, 6-PGDH, 6-phosph 82.4 1.1 3.7E-05 48.6 4.9 33 158-190 2-34 (478)
452 3hyw_A Sulfide-quinone reducta 82.4 1.9 6.5E-05 45.9 6.9 54 386-442 200-255 (430)
453 3tri_A Pyrroline-5-carboxylate 82.4 1.3 4.5E-05 44.2 5.3 34 157-190 3-39 (280)
454 3o8q_A Shikimate 5-dehydrogena 82.3 1.3 4.4E-05 44.3 5.1 34 157-190 126-160 (281)
455 2ahr_A Putative pyrroline carb 82.1 1 3.6E-05 44.1 4.3 33 158-190 4-36 (259)
456 3c7a_A Octopine dehydrogenase; 82.0 0.75 2.6E-05 48.6 3.5 31 158-188 3-34 (404)
457 3d1l_A Putative NADP oxidoredu 81.9 1 3.5E-05 44.4 4.2 33 158-190 11-44 (266)
458 2qrj_A Saccharopine dehydrogen 81.8 1.1 3.7E-05 46.9 4.4 40 156-195 213-257 (394)
459 1ez4_A Lactate dehydrogenase; 81.7 1.3 4.4E-05 45.2 4.9 35 156-190 4-40 (318)
460 1i36_A Conserved hypothetical 81.7 1.1 3.9E-05 44.0 4.5 30 159-188 2-31 (264)
461 1o94_A Tmadh, trimethylamine d 81.7 1.2 4.1E-05 51.1 5.3 34 157-190 528-563 (729)
462 3t4e_A Quinate/shikimate dehyd 81.7 1.5 5.2E-05 44.4 5.4 33 157-189 148-181 (312)
463 1yb4_A Tartronic semialdehyde 81.6 0.97 3.3E-05 45.3 4.0 32 158-190 4-35 (295)
464 3pl8_A Pyranose 2-oxidase; sub 81.5 1.1 3.7E-05 50.4 4.6 47 399-445 273-326 (623)
465 1lu9_A Methylene tetrahydromet 81.5 1.5 5.2E-05 43.8 5.4 34 157-190 119-153 (287)
466 1nvt_A Shikimate 5'-dehydrogen 81.4 1.1 3.6E-05 45.0 4.2 33 157-190 128-160 (287)
467 1zud_1 Adenylyltransferase THI 81.3 1.5 5E-05 43.1 5.0 35 157-191 28-63 (251)
468 1leh_A Leucine dehydrogenase; 81.2 1.5 5.1E-05 45.5 5.3 33 157-189 173-205 (364)
469 3zwc_A Peroxisomal bifunctiona 81.1 1.6 5.5E-05 49.8 5.9 35 157-191 316-350 (742)
470 4a9w_A Monooxygenase; baeyer-v 81.0 1.2 4E-05 45.5 4.4 33 157-190 163-195 (357)
471 2pzm_A Putative nucleotide sug 80.9 1.7 6E-05 44.1 5.7 36 155-190 18-54 (330)
472 2iz1_A 6-phosphogluconate dehy 80.7 1.5 5.2E-05 47.4 5.3 34 157-190 5-38 (474)
473 2d5c_A AROE, shikimate 5-dehyd 80.7 1.6 5.4E-05 43.1 5.1 32 159-190 118-149 (263)
474 1gpe_A Protein (glucose oxidas 80.6 1.4 4.7E-05 49.2 5.1 49 396-444 241-298 (587)
475 3rui_A Ubiquitin-like modifier 80.6 1.7 5.8E-05 44.5 5.3 35 157-191 34-69 (340)
476 3h8v_A Ubiquitin-like modifier 80.5 1.4 4.7E-05 44.3 4.5 35 157-191 36-71 (292)
477 1np3_A Ketol-acid reductoisome 80.4 1.6 5.4E-05 44.9 5.1 33 158-190 17-49 (338)
478 3vps_A TUNA, NAD-dependent epi 80.3 1.6 5.6E-05 43.8 5.2 35 157-191 7-42 (321)
479 4hv4_A UDP-N-acetylmuramate--L 79.9 1.3 4.4E-05 48.2 4.5 34 157-190 22-56 (494)
480 3ce6_A Adenosylhomocysteinase; 79.9 1.6 5.6E-05 47.2 5.2 35 156-190 273-307 (494)
481 3gvp_A Adenosylhomocysteinase 79.7 1.6 5.5E-05 46.1 4.9 35 156-190 219-253 (435)
482 1npy_A Hypothetical shikimate 79.7 1.7 5.8E-05 43.2 4.9 34 157-190 119-153 (271)
483 1gpj_A Glutamyl-tRNA reductase 79.7 1.6 5.6E-05 46.1 5.1 35 156-190 166-201 (404)
484 3fi9_A Malate dehydrogenase; s 79.4 1.8 6.2E-05 44.5 5.1 34 157-190 8-44 (343)
485 2zqz_A L-LDH, L-lactate dehydr 78.7 2.1 7E-05 43.8 5.3 35 156-190 8-44 (326)
486 4a26_A Putative C-1-tetrahydro 78.5 2.3 7.8E-05 42.6 5.4 34 156-189 164-198 (300)
487 2dbq_A Glyoxylate reductase; D 78.3 2.3 7.8E-05 43.7 5.5 36 156-191 149-184 (334)
488 1a4i_A Methylenetetrahydrofola 78.3 2.4 8.1E-05 42.5 5.4 34 156-189 164-198 (301)
489 1mld_A Malate dehydrogenase; o 78.2 1.8 6.3E-05 43.9 4.7 32 159-190 2-36 (314)
490 1cjc_A Protein (adrenodoxin re 78.2 2.5 8.5E-05 45.5 6.0 45 399-443 270-333 (460)
491 4fk1_A Putative thioredoxin re 78.0 1.6 5.5E-05 43.8 4.3 51 389-440 183-233 (304)
492 3obb_A Probable 3-hydroxyisobu 77.9 1.9 6.4E-05 43.6 4.7 33 158-190 4-36 (300)
493 3enk_A UDP-glucose 4-epimerase 77.9 2.5 8.6E-05 42.9 5.8 36 156-191 4-40 (341)
494 3dqp_A Oxidoreductase YLBE; al 77.8 1.8 6.1E-05 41.0 4.3 33 159-191 2-35 (219)
495 3nlc_A Uncharacterized protein 77.8 2.2 7.6E-05 47.0 5.6 42 155-196 105-146 (549)
496 1smk_A Malate dehydrogenase, g 77.8 1.8 6.1E-05 44.3 4.5 35 157-191 8-45 (326)
497 1y1p_A ARII, aldehyde reductas 77.7 2.8 9.4E-05 42.5 6.0 35 156-190 10-45 (342)
498 3orq_A N5-carboxyaminoimidazol 77.6 2.9 9.9E-05 43.6 6.2 36 156-191 11-46 (377)
499 2d4a_B Malate dehydrogenase; a 77.6 1.9 6.5E-05 43.7 4.6 32 159-190 1-33 (308)
500 3h5n_A MCCB protein; ubiquitin 77.4 2.2 7.6E-05 44.1 5.1 35 157-191 118-153 (353)
No 1
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=100.00 E-value=3.2e-57 Score=506.88 Aligned_cols=477 Identities=25% Similarity=0.354 Sum_probs=319.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCc--
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE-- 235 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~-- 235 (675)
++|||||||++||+||++|+++|++|+|||+++.+||+++|++++|+.||.|++++. .+..+.++++.+|..
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~------~~~~~~~l~~~~g~~~~ 75 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVIT------DPSAIEELFALAGKQLK 75 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETTEEEECSCCCBS------CTHHHHHHHHTTTCCGG
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeec------CchhHHHHHHHhcchhh
Confidence 579999999999999999999999999999999999999999999999999999886 345677888888754
Q ss_pred --eeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 005832 236 --MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (675)
Q Consensus 236 --~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (675)
++..+......+.+++|..+.++.+...+.+.+.+.+|.+.+++.+|++.....+..... ... ..+...+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 152 (501)
T 4dgk_A 76 EYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYL-KLG--TVPFLSFRDMLR 152 (501)
T ss_dssp GTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC---C--CCCCCCHHHHHH
T ss_pred hceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhh-hcc--ccccchhhhhhh
Confidence 334555556677789999999999999999999999999999998888766554321110 000 000000011111
Q ss_pred ChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHHHH
Q 005832 314 RPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLA 393 (675)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~ 393 (675)
.......+ ....++.+.+.+++.++.++.++...+.+.+ ..+...++.+..+... ....|.++|+||++.|+++|+
T Consensus 153 ~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~~~~~~-~~~~G~~~p~GG~~~l~~aL~ 228 (501)
T 4dgk_A 153 AAPQLAKL--QAWRSVYSKVASYIEDEHLRQAFSFHSLLVG-GNPFATSSIYTLIHAL-EREWGVWFPRGGTGALVQGMI 228 (501)
T ss_dssp SGGGTTTS--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-SCC--CCCTHHHHHHH-HSCCCEEEETTHHHHHHHHHH
T ss_pred hhhhhhhh--hhcccHHHHHHHHhccHHHHhhhhhhhcccC-CCcchhhhhhhhhhhh-hccCCeEEeCCCCcchHHHHH
Confidence 10000000 0113567888999999999999988776655 4566666554443332 344678899999999999999
Q ss_pred HHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEE
Q 005832 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLS 473 (675)
Q Consensus 394 ~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~ 473 (675)
+.++++|++|++|++|++|+.+++++++|+++||+++.||.||+|++++.++..|+++...+....+.+..++.+++.++
T Consensus 229 ~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~s~~~ 308 (501)
T 4dgk_A 229 KLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQTKRMSNSLFV 308 (501)
T ss_dssp HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---------------------------CCEEEE
T ss_pred HHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhhhhhccccCCceeE
Confidence 99999999999999999999999999999999999999999999999999988899877777666666677778889999
Q ss_pred EEEeeccccCCCCCCccceeeccchhhh-cc--------CCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCCh
Q 005832 474 IHMGVKAEVLPPDTDCHHFVLEDDWNRL-EE--------PYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQ 544 (675)
Q Consensus 474 v~l~l~~~~~p~~~~~~~~~~~~~~~~~-~~--------~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~ 544 (675)
++++++.+. +....|++++..++... +. ....+|+++++..||+++|+|+++++++++.+...|. +
T Consensus 309 ~~~~l~~~~--~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~~~~---~ 383 (501)
T 4dgk_A 309 LYFGLNHHH--DQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHLGTA---N 383 (501)
T ss_dssp EEEEESSCC--TTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCTTTS---C
T ss_pred EEecccCCc--cccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEEEEEecCccccc---c
Confidence 999999875 33445666666554321 11 1135789999999999999999999998877654443 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCc-ccCCCCCCCCCCCCCCCC-CCCCCcEEE
Q 005832 545 KDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGT-YGPMPRGTPKGLLGMPFN-TTGINGLYC 622 (675)
Q Consensus 545 ~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~-yg~~p~~~~~~~~~~p~~-~t~i~gLyl 622 (675)
.+|++.++++.+++++.|+++++|+++++|+..++.||.||+++++.++|. ||..|...+..+ .||.. .|+++|||+
T Consensus 384 ~~~~~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~-~RP~~~~t~i~gLyl 462 (501)
T 4dgk_A 384 LDWTVEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAW-FRPHNRDKTITNLYL 462 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC-------------------------------CCTTEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccc-cCCCCCCCCCCCEEE
Confidence 468889999999999999855789999999999999999999999888875 776555444333 35644 589999999
Q ss_pred eCCCccCCCChhHHhhhHHHHHHHHHHHhCC
Q 005832 623 VGDSCFPGQGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 623 aG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
||++||||+||+||+.||++||++|++|+.-
T Consensus 463 ~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~g 493 (501)
T 4dgk_A 463 VGAGTHPGAGIPGVIGSAKATAGLMLEDLIG 493 (501)
T ss_dssp CCCH------HHHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999854
No 2
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=100.00 E-value=2.5e-36 Score=330.23 Aligned_cols=409 Identities=22% Similarity=0.289 Sum_probs=279.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
+||||||||++||+||++|+++|++|+|||+++.+||++.++..+|+.+|.|++.+.... ....+.++++++|+...
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~---~~~~~~~l~~~lg~~~~ 77 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNG---PGGPLACFLKEVEASVN 77 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTG---GGSHHHHHHHHTTCCCC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCC---CccHHHHHHHHhCCCce
Confidence 589999999999999999999999999999999999999999999999999987665322 23467889999998766
Q ss_pred EeeCC-CeEEEEcCC--------CeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHH
Q 005832 238 VIPDP-TTVHFHLPN--------DLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLF 308 (675)
Q Consensus 238 ~~~~~-~~~~~~~~~--------g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (675)
..+.. ....+.+.+ +..+.+. ... ..+. ......+. ..... .+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~--~~~~~~~~-------~~~~~--~~--------- 129 (425)
T 3ka7_A 78 IVRSEMTTVRVPLKKGNPDYVKGFKDISFN-DFP-------SLLS--YKDRMKIA-------LLIVS--TR--------- 129 (425)
T ss_dssp EEECCCCEEEEESSTTCCSSTTCEEEEEGG-GGG-------GGSC--HHHHHHHH-------HHHHH--TT---------
T ss_pred EEecCCceEEeecCCCcccccccccceehh-hhh-------hhCC--HHHHHHHH-------HHHHh--hh---------
Confidence 55433 222222222 2222111 100 0010 00000000 00000 00
Q ss_pred hhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHH-hhcCcccccCCCHHH
Q 005832 309 GQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCD-RHFGGINYPVGGVGG 387 (675)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~g~~~p~gG~~~ 387 (675)
.......++.+++++++.++.++.++...+....+.++...++......+.. ...++.+++.||++.
T Consensus 130 ------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~gG~~~ 197 (425)
T 3ka7_A 130 ------------KNRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRFGGTGIPEGGCKG 197 (425)
T ss_dssp ------------TSCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTSHHH
T ss_pred ------------hcCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhcCCccccCCCHHH
Confidence 0011246778899999999988888777665555567777776433222211 234678899999999
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC-CCC--ChHHHHHHHh
Q 005832 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG-EQL--PKEEENFQKL 464 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~-~~l--p~~~~~~~~~ 464 (675)
++++|++.++++|++|+++++|++|..+++++++|+++ |+++.||.||+|++++.+. .|+++ ..+ |....+.+..
T Consensus 198 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~-~ll~~~~~~~~~~~~~~~~~~ 275 (425)
T 3ka7_A 198 IIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATA-VLCSEALSKEADAAYFKMVGT 275 (425)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHH-HHTTTTCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHH-HhcCCcccccCCHHHHHHhhC
Confidence 99999999999999999999999999999999889885 7789999999999998875 57763 233 6665556666
Q ss_pred hccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCCh
Q 005832 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQ 544 (675)
Q Consensus 465 ~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~ 544 (675)
+.+++ .++++++++++.+ ..++++++.++. + ...+.++|..||+++|+|+++++++... .|...
T Consensus 276 ~~~~~-~~~v~l~~~~~~~----~~~~~~~~~~~~----~--~~~~~~~s~~~p~~ap~G~~~l~~~~~~---~~~~~-- 339 (425)
T 3ka7_A 276 LQPSA-GIKICLAADEPLV----GHTGVLLTPYTR----R--INGVNEVTQADPELAPPGKHLTMCHQYV---APENV-- 339 (425)
T ss_dssp CCCBE-EEEEEEEESSCSS----CSSSEEECCSSS----S--EEEEECGGGTCGGGSCTTCEEEEEEEEE---CGGGG--
T ss_pred cCCCc-eEEEEeecCCCcc----CcCEEEECCChh----h--cceEEeccCCCCCcCCCCCeEEEEEecc---ccccc--
Confidence 66554 6789999998742 235666655432 1 1346788999999999999998876543 23221
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeC
Q 005832 545 KDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVG 624 (675)
Q Consensus 545 ~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG 624 (675)
+. .++.++.++++|+ +++|+.+..++ .+. +| .+++ |...+ +...+|..++|++|||+||
T Consensus 340 ---~~-~~~~~~~~~~~l~-~~~p~~~~~~~--~v~------~~----~~~~---P~~~~-~~~~~~~~~~p~~gL~laG 398 (425)
T 3ka7_A 340 ---KN-LESEIEMGLEDLK-EIFPGKRYEVL--LIQ------SY----HDEW---PVNRA-ASGTDPGNETPFSGLYVVG 398 (425)
T ss_dssp ---GG-HHHHHHHHHHHHH-HHSTTCCEEEE--EEE------EE----BTTB---CSBSS-CTTCCCCSBCSSBTEEECS
T ss_pred ---cc-hHHHHHHHHHHHH-HhCCCCceEEE--EEE------EE----CCCc---ccccc-ccCCCCCCCCCcCCeEEeC
Confidence 11 2455689999999 89998543322 221 11 1111 21111 1123567789999999999
Q ss_pred CCccC--CCChhHHhhhHHHHHHHHH
Q 005832 625 DSCFP--GQGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 625 ~~~~p--G~Gv~gA~~SG~~aA~~Il 648 (675)
||+++ |.||++|+.||++||++|+
T Consensus 399 ~~~~~~gg~gv~~~~~s~~~~~~~i~ 424 (425)
T 3ka7_A 399 DGAKGKGGIEVEGVALGVMSVMEKVL 424 (425)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHHHC--
T ss_pred CccCCCCCCccHHHHHHHHHHHHHhh
Confidence 99998 6799999999999999886
No 3
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-34 Score=314.22 Aligned_cols=410 Identities=18% Similarity=0.225 Sum_probs=277.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCcee
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEME 237 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~~ 237 (675)
+||+|||||++||+||++|+++|++|+||||++.+||+++++..+|+.+|.|++.+..... ...+.++++++|+..+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lg~~~~ 77 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGE---DGPLAHLLRILGAKVE 77 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTT---SSHHHHHHHHHTCCCC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCC---ChHHHHHHHHhCCcce
Confidence 4899999999999999999999999999999999999999999999999999877654322 2357788899998766
Q ss_pred EeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChhh
Q 005832 238 VIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPLE 317 (675)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (675)
..+......+.+ ++..+.++.... ...+.+...+..+..... . .
T Consensus 78 ~~~~~~~~~~~~-~g~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~----------------------~---~--- 121 (421)
T 3nrn_A 78 IVNSNPKGKILW-EGKIFHYRESWK-------FLSVKEKAKALKLLAEIR----------------------M---N--- 121 (421)
T ss_dssp EEECSSSCEEEE-TTEEEEGGGGGG-------GCC--------CCHHHHH----------------------T---T---
T ss_pred EEECCCCeEEEE-CCEEEEcCCchh-------hCCHhHHHHHHHHHHHHH----------------------h---c---
Confidence 555433333333 555554432211 011111111111100000 0 0
Q ss_pred hhHHhhhccccHHHHHHHh-CCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHH-HhhcCcccccCCCHHHHHHHHHHH
Q 005832 318 CLTLAYYLPQNAGNIARKY-IKDPQLLSFIDAECFIVSTINALQTPMINASMVLC-DRHFGGINYPVGGVGGIAKSLAKG 395 (675)
Q Consensus 318 ~~~~~~~~~~s~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~g~~~p~gG~~~l~~~L~~~ 395 (675)
.......++.+++.++ +.++.++.++........+..+.+.++......+. ....++.++|.||++.++++|++.
T Consensus 122 ---~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~ 198 (421)
T 3nrn_A 122 ---KLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERI 198 (421)
T ss_dssp ---CCCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCHHHHHHHHHHH
T ss_pred ---cCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCHHHHHHHHHHH
Confidence 0001125677888888 88888888777665555566777777643322111 123467889999999999999999
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEE
Q 005832 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIH 475 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~ 475 (675)
++++|++|+++++|++|..+++++ | +.+|+++.||.||+|++++.+. +|++.+.+|....+.+.++.++ +.++++
T Consensus 199 ~~~~G~~i~~~~~V~~i~~~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~-~~~~v~ 273 (421)
T 3nrn_A 199 IMENKGKILTRKEVVEINIEEKKV--Y-TRDNEEYSFDVAISNVGVRETV-KLIGRDYFDRDYLKQVDSIEPS-EGIKFN 273 (421)
T ss_dssp HHTTTCEEESSCCEEEEETTTTEE--E-ETTCCEEECSEEEECSCHHHHH-HHHCGGGSCHHHHHHHHTCCCC-CEEEEE
T ss_pred HHHCCCEEEcCCeEEEEEEECCEE--E-EeCCcEEEeCEEEECCCHHHHH-HhcCcccCCHHHHHHHhCCCCC-ceEEEE
Confidence 999999999999999999888876 5 5678889999999999998875 6887545777666666777766 678999
Q ss_pred EeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHHH
Q 005832 476 MGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVA 555 (675)
Q Consensus 476 l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~ 555 (675)
++++++.+ ..+.+++..++. + -.+++++..||+++|+|++++++....+..+ .++..
T Consensus 274 l~~~~~~~----~~~~~~~~~~~~-----~--~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~------------~~~~~ 330 (421)
T 3nrn_A 274 LAVPGEPR----IGNTIVFTPGLM-----I--NGFNEPSALDKSLAREGYTLIMAHMALKNGN------------VKKAI 330 (421)
T ss_dssp EEEESSCS----SCSSEEECTTSS-----S--CEEECGGGTCGGGSCTTEEEEEEEEECTTCC------------HHHHH
T ss_pred EEEcCCcc----cCCeEEEcCCcc-----e--eeEeccCCCCCCcCCCCceEEEEEEeecccc------------HHHHH
Confidence 99998742 234566655432 2 1357888999999999999988876543110 12448
Q ss_pred HHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCCCh--
Q 005832 556 DEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGV-- 633 (675)
Q Consensus 556 ~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv-- 633 (675)
+.++++|+ +++| ...+...... +..+.. |...+. ...+ .++ +|||+|||++.+++|+
T Consensus 331 ~~~~~~L~-~~~p--~~~~~~~~~~-~~~~p~--------~~~~~~------~~~~--~~~-~gl~laGd~~~~~~g~~~ 389 (421)
T 3nrn_A 331 EKGWEELL-EIFP--EGEPLLAQVY-RDGNPV--------NRTRAG------LHIE--WPL-NEVLVVGDGYRPPGGIEV 389 (421)
T ss_dssp HHHHHHHH-HHCT--TCEEEEEEEC----------------------------CCC--CCC-SSEEECSTTCCCTTCCHH
T ss_pred HHHHHHHH-HHcC--CCeEEEeeec-cCCCCc--------ccccCC------CCCC--CCC-CcEEEECCcccCCCceee
Confidence 89999999 8999 2222221111 000100 110110 0122 577 9999999999887666
Q ss_pred hHHhhhHHHHHHHHHHHhCCcccCcch
Q 005832 634 IAVAFSGVMCAHRVAADIGLEKKSPVL 660 (675)
Q Consensus 634 ~gA~~SG~~aA~~Il~~~g~~~~~~~~ 660 (675)
+||+.||++||+.| .+|.-..|-++
T Consensus 390 ~ga~~sg~~aA~~l--~~~~~~~~~~~ 414 (421)
T 3nrn_A 390 DGIALGVMKALEKL--NLGSFSEWYLL 414 (421)
T ss_dssp HHHHHHHHHHHHHT--TSCCCCTTTC-
T ss_pred ehHHHHHHHHHHHh--CcCchhhhhhh
Confidence 99999999999999 66655555443
No 4
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=100.00 E-value=1.3e-32 Score=308.86 Aligned_cols=436 Identities=16% Similarity=0.132 Sum_probs=275.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeC-CeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD-GYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~-g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
..+||||||||++||+||++|+++|++|+|+|+.+++||++.|.+.. |+.+|.|++++.+. ...+.++++++|+
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-----~~~~~~l~~~lgl 77 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-----QNRILRLAKELGL 77 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-----CHHHHHHHHHTTC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-----cHHHHHHHHHcCC
Confidence 35799999999999999999999999999999999999999999885 99999999998752 3457788999998
Q ss_pred ceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 005832 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (675)
+......... .+...+|....+....... ..+.+...+..++....+....+ . ...
T Consensus 78 ~~~~~~~~~~-~~~~~~g~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~---~---~~~----------- 133 (520)
T 1s3e_A 78 ETYKVNEVER-LIHHVKGKSYPFRGPFPPV------WNPITYLDHNNFWRTMDDMGREI---P---SDA----------- 133 (520)
T ss_dssp CEEECCCSSE-EEEEETTEEEEECSSSCCC------CSHHHHHHHHHHHHHHHHHHTTS---C---TTC-----------
T ss_pred cceecccCCc-eEEEECCEEEEecCCCCCC------CCHHHHHHHHHHHHHHHHHHhhc---C---cCC-----------
Confidence 7654332222 2223345554443221000 00000111222222211111100 0 000
Q ss_pred hhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHh----------hcCcccccCCC
Q 005832 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDR----------HFGGINYPVGG 384 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----------~~~g~~~p~gG 384 (675)
+........+...++.+++++.+.++.++.++........+.++.+.++......+... .....+++.||
T Consensus 134 ~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG 213 (520)
T 1s3e_A 134 PWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGG 213 (520)
T ss_dssp GGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTC
T ss_pred CccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCCcceEEEeCC
Confidence 00000112245678899999999999888888776544445677777766543222110 11234678999
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKL 464 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~ 464 (675)
++.++++|++.+ |++|+++++|++|..++++++ |++.+|+++.||+||+|+++..+ ..++..+.+|..+.+.+..
T Consensus 214 ~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~l-~~l~~~p~lp~~~~~~i~~ 288 (520)
T 1s3e_A 214 SGQVSERIMDLL---GDRVKLERPVIYIDQTRENVL-VETLNHEMYEAKYVISAIPPTLG-MKIHFNPPLPMMRNQMITR 288 (520)
T ss_dssp THHHHHHHHHHH---GGGEESSCCEEEEECSSSSEE-EEETTSCEEEESEEEECSCGGGG-GGSEEESCCCHHHHHHTTS
T ss_pred HHHHHHHHHHHc---CCcEEcCCeeEEEEECCCeEE-EEECCCeEEEeCEEEECCCHHHH-cceeeCCCCCHHHHHHHHh
Confidence 999999998876 789999999999998888776 88999999999999999998875 4565455788877777766
Q ss_pred hccCCcEEEEEEeeccccCCCCCCccceee-ccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEeccc-chhhccC
Q 005832 465 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVL-EDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWEGL 542 (675)
Q Consensus 465 ~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~~~ 542 (675)
+.+. +..++++.+++++|+... .....+ ..+ +.+...+ +|++..+.+..++..++... ...|.++
T Consensus 289 ~~~~-~~~kv~l~~~~~~w~~~~-~~g~~~~~~~----~~~~~~~-------~d~~~~~~~~~~l~~~~~~~~a~~~~~~ 355 (520)
T 1s3e_A 289 VPLG-SVIKCIVYYKEPFWRKKD-YCGTMIIDGE----EAPVAYT-------LDDTKPEGNYAAIMGFILAHKARKLARL 355 (520)
T ss_dssp CCBC-CEEEEEEECSSCGGGGGT-EEEEEEECST----TCSCSEE-------EECCCTTSCSCEEEEEEETHHHHHHTTS
T ss_pred CCCc-ceEEEEEEeCCCcccCCC-CCceeeccCC----CCceEEE-------eeCCCCCCCCCEEEEEccchhhhhhhcC
Confidence 6655 578999999988765321 112222 110 1222211 12232233346666666442 2345443
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhCCCCc-CceEEEEecChhHHHHHhcCCCCccc-CCCCCCCCCCCCCCCCCCCCCcE
Q 005832 543 AQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRRYLARDQGTYG-PMPRGTPKGLLGMPFNTTGINGL 620 (675)
Q Consensus 543 ~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~v~tP~~~~~~~~~~~G~yg-~~p~~~~~~~~~~p~~~t~i~gL 620 (675)
.++++.+.+++.|+ +++|.-. .......+. .|.+ .....|+|. ..+.+.... .++..+++++||
T Consensus 356 -------~~~e~~~~vl~~L~-~~~~~~~~~~p~~~~~~---~W~~-~~~~~G~~~~~~~~g~~~~--~~~~l~~p~~~L 421 (520)
T 1s3e_A 356 -------TKEERLKKLCELYA-KVLGSLEALEPVHYEEK---NWCE-EQYSGGCYTTYFPPGILTQ--YGRVLRQPVDRI 421 (520)
T ss_dssp -------CHHHHHHHHHHHHH-HHHTCGGGGCCSEEEEE---EGGG-CTTTCSSSCBCCCTTHHHH--HGGGTTCCBTTE
T ss_pred -------CHHHHHHHHHHHHH-HHhCccccCCccEEEEE---eeCC-CCCCCCCCccccCCCcccc--chHHHhCCCCCE
Confidence 35788899999998 7776521 111111110 1111 011255554 222111000 123456789999
Q ss_pred EEeCCCc---cCCCChhHHhhhHHHHHHHHHHHhCC
Q 005832 621 YCVGDSC---FPGQGVIAVAFSGVMCAHRVAADIGL 653 (675)
Q Consensus 621 ylaG~~~---~pG~Gv~gA~~SG~~aA~~Il~~~g~ 653 (675)
||||+++ ++| +|+||+.||++||++|++.++.
T Consensus 422 ~fAG~~t~~~~~g-~v~GAi~SG~~aA~~i~~~l~~ 456 (520)
T 1s3e_A 422 YFAGTETATHWSG-YMEGAVEAGERAAREILHAMGK 456 (520)
T ss_dssp EECSGGGCSSSTT-SHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEeehhhcCcCcE-EhHHHHHHHHHHHHHHHHHHhc
Confidence 9999987 444 8999999999999999999864
No 5
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=100.00 E-value=1.5e-31 Score=294.95 Aligned_cols=430 Identities=14% Similarity=0.085 Sum_probs=266.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
.+||+|||||++||+||++|+++|++|+|+|+.+.+||++.+...+|+.+|.|++++... ...+.++++++|+..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-----~~~~~~~~~~~g~~~ 79 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-----QTALISLLDELGLKT 79 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-----CHHHHHHHHHTTCCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-----cHHHHHHHHHcCCcc
Confidence 579999999999999999999999999999999999999999999999999999988642 345678899999875
Q ss_pred eEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh
Q 005832 237 EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (675)
..........+...++....+......+ .+.....+..++....+...... ...+ .
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----------~ 135 (453)
T 2yg5_A 80 FERYREGESVYISSAGERTRYTGDSFPT-------NETTKKEMDRLIDEMDDLAAQIG------AEEP-----------W 135 (453)
T ss_dssp EECCCCSEEEEECTTSCEEEECSSSCSC-------CHHHHHHHHHHHHHHHHHHHHHC------SSCG-----------G
T ss_pred cccccCCCEEEEeCCCceeeccCCCCCC-------ChhhHHHHHHHHHHHHHHHhhcC------CCCC-----------C
Confidence 4433333323333335444432211000 00000111122221111111110 0000 0
Q ss_pred hhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCC-CchHHHHHHHHHHh---------hcCcccccCCCHH
Q 005832 317 ECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINAL-QTPMINASMVLCDR---------HFGGINYPVGGVG 386 (675)
Q Consensus 317 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~---------~~~g~~~p~gG~~ 386 (675)
.......+...++.+++++++.++.++.++...+....+.++. +.++......+... .....+++.||++
T Consensus 136 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~ 215 (453)
T 2yg5_A 136 AHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQ 215 (453)
T ss_dssp GSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTH
T ss_pred CCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCcceEEEcCChH
Confidence 0001123446788999999999999888887665433345666 77765543222110 0112467999999
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCe-EEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhh
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLY 465 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~-v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~ 465 (675)
.++++|++.+ |++|+++++|++|..++++ +. |++ +|+++.||+||+|+++..+ ..++..+.+|..+.+.+..+
T Consensus 216 ~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~v~-v~~-~~~~~~ad~VI~a~p~~~~-~~l~~~p~lp~~~~~~i~~~ 289 (453)
T 2yg5_A 216 QVSIRMAEAL---GDDVFLNAPVRTVKWNESGATV-LAD-GDIRVEASRVILAVPPNLY-SRISYDPPLPRRQHQMHQHQ 289 (453)
T ss_dssp HHHHHHHHHH---GGGEECSCCEEEEEEETTEEEE-EET-TTEEEEEEEEEECSCGGGG-GGSEEESCCCHHHHHHGGGE
T ss_pred HHHHHHHHhc---CCcEEcCCceEEEEEeCCceEE-EEE-CCeEEEcCEEEEcCCHHHH-hcCEeCCCCCHHHHHHHhcC
Confidence 9999998876 7899999999999998887 54 765 6778999999999998754 56665557888777777777
Q ss_pred ccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCC-ceEEEEEeccc-chhhccCC
Q 005832 466 VKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEG-HHILHIFTICS-IEDWEGLA 543 (675)
Q Consensus 466 ~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G-~~~l~~~~~~~-~~~w~~~~ 543 (675)
.+. +..++++.+++++|+... ....++.+ +.+...++ |++ .|+| +.++.+++... ...|..
T Consensus 290 ~~~-~~~kv~l~~~~~~w~~~~-~~g~~~~~-----~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~~~~~~~~-- 352 (453)
T 2yg5_A 290 SLG-LVIKVHAVYETPFWREDG-LSGTGFGA-----SEVVQEVY-------DNT-NHEDDRGTLVAFVSDEKADAMFE-- 352 (453)
T ss_dssp EEC-CEEEEEEEESSCGGGGGT-EEEEEECT-----TSSSCEEE-------ECC-CTTCSSEEEEEEEEHHHHHHHHH--
T ss_pred CCc-ceEEEEEEECCCCCCCCC-CCceeecC-----CCCeEEEE-------eCC-CCCCCCCEEEEEeccHHHHHHhc--
Confidence 665 478999999988764321 11222221 12322111 222 3444 45565655432 223432
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCCC-cCceEEEEecChhHHHHHhcCCCCcccC-CCCCCCCCCCCCCCCCCCCCcEE
Q 005832 544 QKDYDAKKELVADEIINRLENKLFPGL-KQSIAFREIGSPKTHRRYLARDQGTYGP-MPRGTPKGLLGMPFNTTGINGLY 621 (675)
Q Consensus 544 ~~~~~~~ke~~~~~il~~L~~~~~P~l-~~~i~~~~v~tP~~~~~~~~~~~G~yg~-~p~~~~~~~~~~p~~~t~i~gLy 621 (675)
..++++.+.+++.|+ +++|.- ...+ ...+ .+|.+. ....|+|.+ .+.+.... . .+..+++++|||
T Consensus 353 -----~~~~~~~~~~l~~L~-~~~~~~~~~p~-~~~~---~~W~~~-~~~~G~~~~~~~~g~~~~-~-~~~~~~p~~~l~ 419 (453)
T 2yg5_A 353 -----LSAEERKATILASLA-RYLGPKAEEPV-VYYE---SDWGSE-EWTRGCYAASFDLGGLHR-Y-GADSRTPVGPIH 419 (453)
T ss_dssp -----SCHHHHHHHHHHHHH-HHHCGGGGCCS-EEEE---CCTTTC-TTTCSSSCEEECTTHHHH-H-GGGTTCCBTTEE
T ss_pred -----CCHHHHHHHHHHHHH-HHhCccCCCcc-EEEE---eecCCC-CCCCCCCcCcCCCCcccc-c-hHHHhCCcCceE
Confidence 235788899999998 777641 1221 1111 112110 112455431 11111000 1 234567899999
Q ss_pred EeCCCcc---CCCChhHHhhhHHHHHHHHHHHhC
Q 005832 622 CVGDSCF---PGQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 622 laG~~~~---pG~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
|||+++. +| +|+||+.||++||++|++.++
T Consensus 420 ~aG~~~~~~~~g-~v~gA~~SG~~aA~~i~~~l~ 452 (453)
T 2yg5_A 420 FSCSDIAAEGYQ-HVDGAVRMGQRTAADIIARSK 452 (453)
T ss_dssp ECCGGGCSTTTT-SHHHHHHHHHHHHHHHHHHC-
T ss_pred Eeeccccccccc-chHHHHHHHHHHHHHHHHHhc
Confidence 9999973 44 799999999999999998764
No 6
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=100.00 E-value=3.9e-32 Score=301.76 Aligned_cols=425 Identities=17% Similarity=0.166 Sum_probs=266.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
...+||+|||||++||+||++|+++|++|+|+|+.+.+||++.|+..+|+.+|.|++++.+. ...+.++++++|+
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~-----~~~~~~~~~~~gl 88 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDR-----EPATRALAAALNL 88 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETT-----CHHHHHHHHHTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhh-----hHHHHHHHHHcCC
Confidence 44689999999999999999999999999999999999999999999999999999998752 3467899999998
Q ss_pred ceeEeeCC--CeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005832 235 EMEVIPDP--TTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 235 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
........ ....+.+.+|..+.++.+...+... ..- ... ..+ + .+. ..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~---~~~-~~~---~~~----~---~~~---------------~~~ 139 (478)
T 2ivd_A 89 EGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLAS---DIL-PLG---ARL----R---VAG---------------ELF 139 (478)
T ss_dssp GGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTC---SSS-CHH---HHH----H---HHG---------------GGG
T ss_pred cceeeecCccccceEEEECCEEEECCCCHHHhccC---CCC-CHH---HHH----H---Hhh---------------hhh
Confidence 64443221 2233444566666665554333210 000 000 000 0 000 000
Q ss_pred cChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH--------------H-------
Q 005832 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL--------------C------- 371 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~--------------~------- 371 (675)
.... ......++.+++++.+.++.++.++........+.++.+.++......+ .
T Consensus 140 ~~~~-----~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (478)
T 2ivd_A 140 SRRA-----PEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQR 214 (478)
T ss_dssp CCCC-----CTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHT
T ss_pred cCCC-----CCCCCCCHHHHHHHhhCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccc
Confidence 0000 0123467888888888777777766655444445566666543321100 0
Q ss_pred -----Hhhc----CcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCCEEEcCEEEECC
Q 005832 372 -----DRHF----GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNA 439 (675)
Q Consensus 372 -----~~~~----~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VI~A~ 439 (675)
.... .++++++||++.++++|++.+ |++|+++++|++|..+++++ .|++ .+|+++.||.||+|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~-~v~~~~~~~g~~~~ad~vV~a~ 290 (478)
T 2ivd_A 215 QAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGW-RLIIEEHGRRAELSVAQVVLAA 290 (478)
T ss_dssp CC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC--CC-EEEEEETTEEEEEECSEEEECS
T ss_pred cccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEecCCeE-EEEEeecCCCceEEcCEEEECC
Confidence 0011 567889999999999999888 67999999999999877764 5877 678889999999999
Q ss_pred ChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCC
Q 005832 440 TRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSS 519 (675)
Q Consensus 440 g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~ 519 (675)
+++.+ ..|++ .+|+...+.+..+.+. +..++++.++++.|+.. ....++++.. + ..+. ..+.+++..++.
T Consensus 291 ~~~~~-~~ll~--~l~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~-~~~~~~~~~~-~--~~~~--~~~~~~s~~~~~ 360 (478)
T 2ivd_A 291 PAHAT-AKLLR--PLDDALAALVAGIAYA-PIAVVHLGFDAGTLPAP-DGFGFLVPAE-E--QRRM--LGAIHASTTFPF 360 (478)
T ss_dssp CHHHH-HHHHT--TTCHHHHHHHHTCCBC-CEEEEEEEECTTSSCCC-CSSEEECCGG-G--CCSC--CEEEEHHHHCGG
T ss_pred CHHHH-HHHhh--ccCHHHHHHHhcCCCC-cEEEEEEEEccccCCCC-CceEEEecCC-C--CCce--EEEEEEcccCCC
Confidence 98875 46775 4787777777777665 57899999998876542 1122232211 0 0111 223334444556
Q ss_pred CCCCCceEEEEEecccch-hhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCccc-
Q 005832 520 LAPEGHHILHIFTICSIE-DWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYG- 597 (675)
Q Consensus 520 ~ap~G~~~l~~~~~~~~~-~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg- 597 (675)
++|+|+.++.+++..... .|. +..++++.+.+++.|+ +++|... .+....+ . .+.+.+.
T Consensus 361 ~~p~g~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~-~~~~~~~-~p~~~~~---------~-~w~~~~p~ 421 (478)
T 2ivd_A 361 RAEGGRVLYSCMVGGARQPGLV-------EQDEDALAALAREELK-ALAGVTA-RPSFTRV---------F-RWPLGIPQ 421 (478)
T ss_dssp GBSTTCEEEEEEEECTTCGGGG-------GSCHHHHHHHHHHHHH-HHHCCCS-CCSEEEE---------E-EESSCCBC
T ss_pred cCCCCCEEEEEEeCCcCCcccc-------CCCHHHHHHHHHHHHH-HHhCCCC-CCcEEEE---------E-ECCCcccC
Confidence 678888887777654322 222 2246789999999999 8887653 2222111 0 1112221
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhCCc
Q 005832 598 PMPRGTP-KGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLE 654 (675)
Q Consensus 598 ~~p~~~~-~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~~ 654 (675)
..|.... ...+ ++...+ ++|||+||+++ +|.||+||+.||++||++|++.++.+
T Consensus 422 ~~~g~~~~~~~~-~~~~~~-~~~l~~aG~~~-~g~gv~gA~~SG~~aA~~i~~~l~~~ 476 (478)
T 2ivd_A 422 YNLGHLERVAAI-DAALQR-LPGLHLIGNAY-KGVGLNDCIRNAAQLADALVAGNTSH 476 (478)
T ss_dssp CBTTHHHHHHHH-HHHHHT-STTEEECSTTT-SCCSHHHHHHHHHHHHHHHCC-----
T ss_pred CCcCHHHHHHHH-HHHHhh-CCCEEEEccCC-CCCCHHHHHHHHHHHHHHHHHhhccC
Confidence 1111000 0000 000112 68999999997 67899999999999999998876543
No 7
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=99.98 E-value=2.5e-30 Score=288.55 Aligned_cols=431 Identities=16% Similarity=0.124 Sum_probs=265.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
.+||+|||||++||+||++|+++|++|+|||+.+++||++.|+..+|+.+|.|++++++. ...+.++++++|+..
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~-----~~~~~~~l~~lgl~~ 113 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWH-----QSHVWREITRYKMHN 113 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTT-----SHHHHHHHHHTTCTT
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCc-----cHHHHHHHHHcCCcc
Confidence 489999999999999999999999999999999999999999999999999999998753 234777888899843
Q ss_pred eEeeC----CCeEEEEcCC--CeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhcc-chhhHHHh
Q 005832 237 EVIPD----PTTVHFHLPN--DLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSL-EEPIYLFG 309 (675)
Q Consensus 237 ~~~~~----~~~~~~~~~~--g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 309 (675)
+..+. .....+.+.+ +....++. ......+ ...+. .+.. ......+.+ ..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~-----------~~~~~---~~~~-~~~~~~~~~~~~~~---- 172 (495)
T 2vvm_A 114 ALSPSFNFSRGVNHFQLRTNPTTSTYMTH--EAEDELL-----------RSALH---KFTN-VDGTNGRTVLPFPH---- 172 (495)
T ss_dssp CEEESCCCSSSCCEEEEESSTTCCEEECH--HHHHHHH-----------HHHHH---HHHC-SSSSTTTTTCSCTT----
T ss_pred eeecccccCCCceEEEecCCCCceeecCH--HHHHHHH-----------HHHHH---HHHc-cchhhhhhcCCCCC----
Confidence 33222 1122223333 33333321 1111100 00000 0000 000000000 0000
Q ss_pred hhhcChhhhhHHhhhccccHHHHHHHhC--CCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHH--------hhcCccc
Q 005832 310 QFFKRPLECLTLAYYLPQNAGNIARKYI--KDPQLLSFIDAECFIVSTINALQTPMINASMVLCD--------RHFGGIN 379 (675)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--------~~~~g~~ 379 (675)
.+........+...++.+++++.. .++.++.++........+.++.+.++......+.. ....+.+
T Consensus 173 ----~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (495)
T 2vvm_A 173 ----DMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSY 248 (495)
T ss_dssp ----STTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSE
T ss_pred ----CcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceE
Confidence 000001122344668888888876 66777777777666555667777776544322211 0123456
Q ss_pred ccCCCHHHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHH
Q 005832 380 YPVGGVGGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEE 458 (675)
Q Consensus 380 ~p~gG~~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~ 458 (675)
++.||++.++++|.+.+++.| ++|+++++|++|..++++++ |++.+|+++.||+||+|+|+..+ ..++..+.+|..+
T Consensus 249 ~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~vI~a~~~~~l-~~i~~~p~lp~~~ 326 (495)
T 2vvm_A 249 KFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAAR-VTARDGREFVAKRVVCTIPLNVL-STIQFSPALSTER 326 (495)
T ss_dssp EETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEE-EEETTCCEEEEEEEEECCCGGGG-GGSEEESCCCHHH
T ss_pred EeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEE-EEECCCCEEEcCEEEECCCHHHH-hheeeCCCCCHHH
Confidence 789999999999999999999 99999999999998777664 88889988999999999998775 4554345688887
Q ss_pred HHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchh
Q 005832 459 ENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIED 538 (675)
Q Consensus 459 ~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~ 538 (675)
.+.+..+.+.+ ..+|++.++++.|. + ...+... +.+...++- ....|+|..++..+.... ..
T Consensus 327 ~~ai~~~~~~~-~~kv~l~~~~~~~~-~--~~g~~~~------~~~~~~~~~-------~~~~~~~~~vl~~~~~~~-~~ 388 (495)
T 2vvm_A 327 ISAMQAGHVSM-CTKVHAEVDNKDMR-S--WTGIAYP------FNKLCYAIG-------DGTTPAGNTHLVCFGNSA-NH 388 (495)
T ss_dssp HHHHHHCCCCC-CEEEEEEESCGGGG-G--EEEEECS------SCSSCEEEE-------EEECTTSCEEEEEEECST-TC
T ss_pred HHHHHhcCCCc-eeEEEEEECCccCC-C--ceeEecC------CCCcEEEec-------CCCCCCCCeEEEEEeCcc-cc
Confidence 77777766554 67999999987642 1 1111111 123222221 122455666666554321 11
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCC
Q 005832 539 WEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGIN 618 (675)
Q Consensus 539 w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~ 618 (675)
+.+ ++..+.+++.|+ +++|+..+ +....+. .|... ....|+|...+.+.... .++..+++++
T Consensus 389 ---~~~-------~e~~~~~~~~L~-~~~~~~~~-~~~~~~~---~W~~d-p~~~g~y~~~~~g~~~~--~~~~l~~p~~ 450 (495)
T 2vvm_A 389 ---IQP-------DEDVRETLKAVG-QLAPGTFG-VKRLVFH---NWVKD-EFAKGAWFFSRPGMVSE--CLQGLREKHG 450 (495)
T ss_dssp ---CCT-------TTCHHHHHHHHH-TTSTTSCC-EEEEEEC---CTTTC-TTTSSSSCCCCTTHHHH--HHHHHHCCBT
T ss_pred ---CCC-------HHHHHHHHHHHH-HhcCCCCC-ceEEEEe---EcCCC-CCCCCCccCcCCCcchh--hHHHHhCcCC
Confidence 111 234567788898 78887422 2222221 12110 01135554332211000 0122346789
Q ss_pred cEEEeCCCccC--CCChhHHhhhHHHHHHHHHHHhCCcc
Q 005832 619 GLYCVGDSCFP--GQGVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 619 gLylaG~~~~p--G~Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
||||||+++.+ .+.|+||+.||++||++|++.++...
T Consensus 451 ~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~~~ 489 (495)
T 2vvm_A 451 GVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGTKR 489 (495)
T ss_dssp TEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred CEEEechhhhcCCceEEEhHHHHHHHHHHHHHHHhcccc
Confidence 99999999854 35799999999999999999987543
No 8
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=99.97 E-value=2.7e-30 Score=288.88 Aligned_cols=432 Identities=14% Similarity=0.103 Sum_probs=265.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCc
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCE 235 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~ 235 (675)
..+||+|||||++||+||++|+++|++|+|+|+.+.+||++.++..+|+.+|.|++++.+ ....+.++++++|+.
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~-----~~~~~~~~~~~lgl~ 86 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTE-----SEGDVTFLIDSLGLR 86 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCC-----CSHHHHHHHHHTTCG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCccccc-----CcHHHHHHHHHcCCc
Confidence 468999999999999999999999999999999999999999999999999999999874 234678899999987
Q ss_pred eeEee-CCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 005832 236 MEVIP-DPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 236 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (675)
..... ......+.+.+|..+.++.+...+... .+-.....+.... ..+ . .....
T Consensus 87 ~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~---~~~~~~~~~~~~~-------~~~---~-~~~~~----------- 141 (504)
T 1sez_A 87 EKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKS---NFLSTGSKLQMLL-------EPI---L-WKNKK----------- 141 (504)
T ss_dssp GGEECCSSCCCEEEESSSSEEECCSSHHHHHHS---SSSCHHHHHHHHT-------HHH---H-C---------------
T ss_pred ccceeccCCCceEEEECCeEEECCCCHHHHhcc---ccCCHHHHHHHhH-------hhh---c-cCccc-----------
Confidence 54332 222334556777777766665443321 0000001111000 000 0 00000
Q ss_pred hhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH--HHH-------------HHh------
Q 005832 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--MVL-------------CDR------ 373 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~--~~~-------------~~~------ 373 (675)
.. .......++.+++++.+.++.++.++...+....+.++.+.++.... +.. ...
T Consensus 142 ~~----~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (504)
T 1sez_A 142 LS----QVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNE 217 (504)
T ss_dssp ----------CCCBHHHHHHHHHCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC----
T ss_pred cc----ccCCCCccHHHHHHHHcCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 00 00122467888888888877777777765544444556655543210 000 000
Q ss_pred -------------hcCcccccCCCHHHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCe-----EEEEEeC--CC---CE
Q 005832 374 -------------HFGGINYPVGGVGGIAKSLAKGLADKG-SEILYKANVTKVILEQGK-----AVGVRLS--DG---RE 429 (675)
Q Consensus 374 -------------~~~g~~~p~gG~~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~-----v~gV~~~--~G---~~ 429 (675)
...+.++++||++.|+++|++.+ | ++|+++++|++|..++++ .+.|++. +| ++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~~l---~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~ 294 (504)
T 1sez_A 218 KKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDL---REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEE 294 (504)
T ss_dssp ------CCCSCCSTTCSCBEETTCTHHHHHHHHTTS---CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCC
T ss_pred ccccccchhhccccCCceEeeCcHHHHHHHHHHhhc---ccceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCcccee
Confidence 01246789999999999998765 4 789999999999988766 1446664 45 57
Q ss_pred EEcCEEEECCChhhHHhhccCC---CCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCC
Q 005832 430 FYAKTIISNATRWDTFGKLLKG---EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYG 506 (675)
Q Consensus 430 i~ad~VI~A~g~~~~~~~Ll~~---~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 506 (675)
+.||+||+|+++..+. .++.+ .++++.. +..+.+. ++.+|++.++++.|+.....+++++++ ++.... ..
T Consensus 295 ~~ad~VI~a~p~~~l~-~ll~~~~~~~~~~~~---l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~l~~~-~~~~~g-~~ 367 (504)
T 1sez_A 295 ESFDAVIMTAPLCDVK-SMKIAKRGNPFLLNF---IPEVDYV-PLSVVITTFKRENVKYPLEGFGVLVPS-KEQQHG-LK 367 (504)
T ss_dssp CEESEEEECSCHHHHH-TSEEESSSSBCCCTT---SCCCCEE-EEEEEEEEEEGGGBSSCCCSSEEECCG-GGGGGT-CC
T ss_pred EECCEEEECCCHHHHH-HHhhcccCCcccHHH---HhcCCCC-ceEEEEEEEchhhcCCCCCceEEEcCC-CCCCCC-Cc
Confidence 8999999999988765 55521 1233321 2233333 578999999998876554444555543 221000 01
Q ss_pred ceEEecCCCCCCCCCCCCceEEEEEecccc-hhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcC---ceEEEEecCh
Q 005832 507 SIFLSIPTVLDSSLAPEGHHILHIFTICSI-EDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQ---SIAFREIGSP 582 (675)
Q Consensus 507 ~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~-~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~---~i~~~~v~tP 582 (675)
..-+.+++..+|..+|+|+.++++++.... ..|..+ .++++.+.++++|+ +++|.-.+ ..+..|-
T Consensus 368 ~~~~~~~s~~~~~~~p~g~~~l~~~~~g~~~~~~~~~-------~~ee~~~~v~~~L~-~~~g~~~~p~~~~~~~w~--- 436 (504)
T 1sez_A 368 TLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKA-------SRTELKEIVTSDLK-QLLGAEGEPTYVNHLYWS--- 436 (504)
T ss_dssp SSEEEEHHHHCGGGSCTTEEEEEEEEESTTCGGGTTC-------CHHHHHHHHHHHHH-HHHCBCSCCSSEEEEEEE---
T ss_pred cceEEeeccccCCcCCCCCEEEEEEeCCCCcccccCC-------CHHHHHHHHHHHHH-HHhCCCCCCeEEEEeECC---
Confidence 111223344566678889888777765432 233322 35789999999998 77764221 1111111
Q ss_pred hHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhCCc
Q 005832 583 KTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLE 654 (675)
Q Consensus 583 ~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~~ 654 (675)
.. +.....| |... .. ..+...++++|||+||+++. |.||++|+.||++||++|+++++..
T Consensus 437 ~~---~p~~~~g-~~~~---~~----~~~~~~~~~~~l~~aG~~~~-g~~v~gai~sG~~aA~~il~~l~~~ 496 (504)
T 1sez_A 437 KA---FPLYGHN-YDSV---LD----AIDKMEKNLPGLFYAGNHRG-GLSVGKALSSGCNAADLVISYLESV 496 (504)
T ss_dssp EE---EECCCTT-HHHH---HH----HHHHHHHHSTTEEECCSSSS-CSSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CC---CCccCcC-HHHH---HH----HHHHHHHhCCCEEEEeecCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 0000011 1100 00 00112356789999999975 7899999999999999999998754
No 9
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=99.97 E-value=7.4e-30 Score=282.38 Aligned_cols=429 Identities=15% Similarity=0.166 Sum_probs=253.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcC------CeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHH
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG------ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALA 230 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g------~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~ 230 (675)
.+||+|||||++||+||++|+++| ++|+|||+.+.+||++.|...+|+.+|.|++.+.+.. ..+.++++
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~-----~~~~~l~~ 79 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERK-----KSAPQLVK 79 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTC-----THHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCC-----HHHHHHHH
Confidence 589999999999999999999999 9999999999999999999999999999999887532 34778999
Q ss_pred HcCCceeEeeCCCeEEEEcCCCeEEEEcCCHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHh
Q 005832 231 AVGCEMEVIPDPTTVHFHLPNDLSVRVHREYS-DFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFG 309 (675)
Q Consensus 231 ~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (675)
++|+............+.+.++....++.... .....+.... .. .++....+. ....
T Consensus 80 ~lgl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~---~~---~~~~~~~~~----------------~~~~ 137 (470)
T 3i6d_A 80 DLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFV---ST---GLFSLSGKA----------------RAAM 137 (470)
T ss_dssp HTTCCTTEEECCCCCEEEECSSCEEECCC---------------------------CCSH----------------HHHH
T ss_pred HcCCcceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhh---cc---CcCCHHHHH----------------HHhc
Confidence 99987655432222233445555544433210 0000000000 00 000000000 0000
Q ss_pred hhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH------------H------
Q 005832 310 QFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL------------C------ 371 (675)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------~------ 371 (675)
..+... .......++.+++++.+..+....++...+....+.++.+.++......+ .
T Consensus 138 ~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (470)
T 3i6d_A 138 DFILPA-----SKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRP 212 (470)
T ss_dssp HHHSCC-----CSSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------
T ss_pred CcccCC-----CCCCCCcCHHHHHHHhcCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhcc
Confidence 000000 00123456777777776666666555554443334455554432211000 0
Q ss_pred --------HhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 372 --------DRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 372 --------~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
....+.++++.||++.++++|++.+.+ ++|+++++|++|..+++++ .|++.+|+++.||+||+|++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~-~v~~~~g~~~~ad~vi~a~p~~~ 289 (470)
T 3i6d_A 213 QGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCY-SLELDNGVTLDADSVIVTAPHKA 289 (470)
T ss_dssp --------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEECSSSE-EEEESSSCEEEESEEEECSCHHH
T ss_pred ccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeE-EEEECCCCEEECCEEEECCCHHH
Confidence 000225667899999999999988754 7999999999999887776 48899998899999999999887
Q ss_pred HHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCC
Q 005832 444 TFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPE 523 (675)
Q Consensus 444 ~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~ 523 (675)
+ ..++.+. |. ...+..+.+. ++.++++.+++++|+.+.....++++.+ .+....-+.+.+...+...|+
T Consensus 290 ~-~~l~~~~--~~--~~~~~~~~~~-~~~~v~l~~~~~~~~~~~~~~g~l~~~~-----~~~~~~~~~~~s~~~~~~~p~ 358 (470)
T 3i6d_A 290 A-AGMLSEL--PA--ISHLKNMHST-SVANVALGFPEGSVQMEHEGTGFVISRN-----SDFAITACTWTNKKWPHAAPE 358 (470)
T ss_dssp H-HHHTTTS--TT--HHHHHTCEEE-EEEEEEEEESSTTCCCSSCSSEEEECST-----TCCSEEEEEEHHHHCGGGSCT
T ss_pred H-HHHcCCc--hh--hHHHhcCCCC-ceEEEEEEECchhcCCCCCCeEEEccCC-----CCCCceEEEEEcCcCCCcCCC
Confidence 6 4566543 21 2345555554 4789999999988755433223343321 111111122333333456788
Q ss_pred CceEEEEEecccc-hhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCC
Q 005832 524 GHHILHIFTICSI-EDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRG 602 (675)
Q Consensus 524 G~~~l~~~~~~~~-~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~ 602 (675)
|..++.+++.... ..+.. ..++++.+.+++.|+ +++|...+ .+...+. + |..++...+.+
T Consensus 359 ~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~-~~~g~~~~-p~~~~~~------~----w~~a~p~~~~g 419 (470)
T 3i6d_A 359 GKTLLRAYVGKAGDESIVD-------LSDNDIINIVLEDLK-KVMNINGE-PEMTCVT------R----WHESMPQYHVG 419 (470)
T ss_dssp TCEEEEEEECCSSCCGGGT-------SCHHHHHHHHHHHHG-GGSCCCSC-CSEEEEE------E----EEEEEEECBTT
T ss_pred CCEEEEEEECCCCCccccC-------CCHHHHHHHHHHHHH-HHhCCCCC-ceEEEEE------E----cCCccCCCCCC
Confidence 8777777664321 12222 235789999999999 88875432 2211110 0 01111111100
Q ss_pred CCCCCC-CCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 005832 603 TPKGLL-GMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 603 ~~~~~~-~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
.....- .++...++++|||+||+++ .|.||++|+.||+++|++|++++
T Consensus 420 ~~~~~~~~~~~l~~~~~~l~~aG~~~-~g~gv~~a~~sG~~aA~~i~~~l 468 (470)
T 3i6d_A 420 HKQRIKELREALASAYPGVYMTGASF-EGVGIPDCIDQGKAAVSDALTYL 468 (470)
T ss_dssp HHHHHHHHHHHHHHHSTTEEECSTTT-SCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeecC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 000000 0011124568999999986 57899999999999999999876
No 10
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=99.96 E-value=8.2e-30 Score=282.87 Aligned_cols=429 Identities=15% Similarity=0.083 Sum_probs=246.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCCCCCCcceeEee-CCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
.+||+|||||++||+||++|+++|+ +|+|||+.+.+||++++... +|+.+|.|++.+....+ ....+.++++++|
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~--~~~~~~~l~~~lg 79 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGA--LGARTLLLVSELG 79 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHH--HHHHHHHHHHHTT
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCc--ccHHHHHHHHHcC
Confidence 3699999999999999999999999 99999999999999999775 59999999998753211 1345778999999
Q ss_pred CceeEeeCCC-----eEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHH
Q 005832 234 CEMEVIPDPT-----TVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLF 308 (675)
Q Consensus 234 l~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (675)
+..+...... ...+.+.++....++.....+...+. .+... ..... +
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~-~~~~~--~~~~~-------------------------~ 131 (477)
T 3nks_A 80 LDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP-PFSKP--LFWAG-------------------------L 131 (477)
T ss_dssp CGGGEEEECTTSHHHHCEEEEETTEEEECCCSSCC---CCT-TSCSC--SSHHH-------------------------H
T ss_pred CcceeeecCCCCchhcceEEEECCEEEECCCChhhcccccc-hhhhH--HHHHH-------------------------H
Confidence 8754433211 11233345665555543322111000 00000 00000 0
Q ss_pred hhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHH-----------------
Q 005832 309 GQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLC----------------- 371 (675)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----------------- 371 (675)
..+... .......++.+++++.+..+....++........+.++.+.++....-.+.
T Consensus 132 ~~~~~~------~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~ 205 (477)
T 3nks_A 132 RELTKP------RGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGA 205 (477)
T ss_dssp TTTTSC------CCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-
T ss_pred HhhhcC------CCCCCCcCHHHHHHHhhCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 000000 001123455666666555554445544443333344555554433210000
Q ss_pred --------------HhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEE
Q 005832 372 --------------DRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIIS 437 (675)
Q Consensus 372 --------------~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~ 437 (675)
.....+.++++||++.++++|++.++++|++|+++++|++|..++++++.|++ +|.++.||+||+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~-~~~~~~ad~vv~ 284 (477)
T 3nks_A 206 GRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL-RDSSLEADHVIS 284 (477)
T ss_dssp ----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC-SSCEEEESEEEE
T ss_pred ccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE-CCeEEEcCEEEE
Confidence 01122567899999999999999999999999999999999987766445766 455799999999
Q ss_pred CCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCC
Q 005832 438 NATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLD 517 (675)
Q Consensus 438 A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d 517 (675)
|++++.+ ..|+++ .++.....+..+.+. ++.++++.++++.|+.+. . .++++.. .....+-+.+.+...
T Consensus 285 a~p~~~~-~~ll~~--~~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~-~-g~l~~~~-----~~~~~~~~~~~s~~~ 353 (477)
T 3nks_A 285 AIPASVL-SELLPA--EAAPLARALSAITAV-SVAVVNLQYQGAHLPVQG-F-GHLVPSS-----EDPGVLGIVYDSVAF 353 (477)
T ss_dssp CSCHHHH-HHHSCG--GGHHHHHHHHTCCEE-EEEEEEEEETTCCCSSCS-S-EEECCTT-----TCSSEEEEECHHHHC
T ss_pred CCCHHHH-HHhccc--cCHHHHHHHhcCCCC-cEEEEEEEECCCCCCCCC-c-eEEccCC-----CCCCceEEEEecccc
Confidence 9998776 466653 334444445555444 467899999988765332 1 2222211 011111122222222
Q ss_pred CCCC-CCCceEEEEEeccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCc
Q 005832 518 SSLA-PEGHHILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGT 595 (675)
Q Consensus 518 ~~~a-p~G~~~l~~~~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~ 595 (675)
|... ++|...+.+++... ...+.+ +.++..++++.+.+++.|+ ++++. ........+. .+..+.
T Consensus 354 ~~~~~~~~~~~l~~~~gg~~~~~~~~---~~~~~~~~~~~~~~~~~L~-~~~g~-~~~~~~~~v~---------rw~~a~ 419 (477)
T 3nks_A 354 PEQDGSPPGLRVTVMLGGSWLQTLEA---SGCVLSQELFQQRAQEAAA-TQLGL-KEMPSHCLVH---------LHKNCI 419 (477)
T ss_dssp GGGSTTTTCEEEEEEECHHHHHHHHH---SSCCCCHHHHHHHHHHHHH-HHHCC-CSCCSEEEEE---------EEEEEE
T ss_pred CCCCCCCCceEEEEEECCcccccccc---ccCCCCHHHHHHHHHHHHH-HHhCC-CCCCcEEEEE---------EcCCcc
Confidence 3222 34777777766432 111110 0111246889999999998 66532 2222221110 000111
Q ss_pred ccCCCCCCCCCCCC-CCC-CCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHH
Q 005832 596 YGPMPRGTPKGLLG-MPF-NTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 596 yg~~p~~~~~~~~~-~p~-~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~ 650 (675)
..+.+...+ .+. ... .....+|||+||+| +.|.||++|+.||+.||++|+++
T Consensus 420 p~~~~g~~~--~~~~~~~~l~~~~~~l~l~G~~-~~G~gv~~a~~sg~~aA~~il~~ 473 (477)
T 3nks_A 420 PQYTLGHWQ--KLESARQFLTAHRLPLTLAGAS-YEGVAVNDCIESGRQAAVSVLGT 473 (477)
T ss_dssp ECCBTTHHH--HHHHHHHHHHHTTCSEEECSTT-TSCCSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHH--HHHHHHHHHHhcCCCEEEEccC-CCCCcHHHHHHHHHHHHHHHHhc
Confidence 111111000 000 000 00123689999999 57999999999999999999875
No 11
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=99.96 E-value=7.8e-28 Score=266.70 Aligned_cols=433 Identities=15% Similarity=0.140 Sum_probs=248.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHH-cC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAA-VG 233 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~-lG 233 (675)
..+||+|||||++||++|++|++.|+ +|+|+|+.+.+||++.+....|+.+|.|++++.+.... ..+.+.+++++ +|
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~-~~~~~~~~~~~~lg 81 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGG-KMNPIWPIVNSTLK 81 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSS-SCCTHHHHHHTTSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCC-CCCHHHHHHHhhcC
Confidence 35799999999999999999999999 89999999999999999999999999999999854321 12236788888 88
Q ss_pred CceeEeeC-CCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005832 234 CEMEVIPD-PTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 234 l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
+....... .....++..+|..+. ..... .+... ...+..+.. .+.. .+...
T Consensus 82 l~~~~~~~~~~~~~~~~~~g~~~~----~~~~~-~~~~~----~~~~~~~~~-------~~~~----~~~~~-------- 133 (472)
T 1b37_A 82 LRNFRSDFDYLAQNVYKEDGGVYD----EDYVQ-KRIEL----ADSVEEMGE-------KLSA----TLHAS-------- 133 (472)
T ss_dssp CCEEECCCTTGGGCEECSSSSBCC----HHHHH-HHHHH----HHHHHHHHH-------HHHH----TSCTT--------
T ss_pred CceeeccCccccceeEcCCCCCCC----HHHHH-HHHHH----HHHHHHHHH-------HHHH----hhccc--------
Confidence 86432211 111112223443221 11110 00000 001111111 0000 00000
Q ss_pred cChhhhhHHhhhccccHH--HHHHHhCC---CHHHHHHHhhhhh-hhccCCCCCchHHHH--HHHHHHhhcCccc--ccC
Q 005832 313 KRPLECLTLAYYLPQNAG--NIARKYIK---DPQLLSFIDAECF-IVSTINALQTPMINA--SMVLCDRHFGGIN--YPV 382 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~--~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~p~~~~--~~~~~~~~~~g~~--~p~ 382 (675)
. ....+.. ..+.+... ...+..+++.... ...+..+...++... ...+. ....+.+ .+.
T Consensus 134 --~--------~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~ 202 (472)
T 1b37_A 134 --G--------RDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFS-DFGDDVYFVADQ 202 (472)
T ss_dssp --C--------TTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHH-HHCSEEEEECCT
T ss_pred --c--------chhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccccccc-ccCCceeeeecC
Confidence 0 0000000 01111110 0001111111110 000111111111000 00000 1112222 247
Q ss_pred CCHHHHHHHHHHHHHHc--------CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC-CCC
Q 005832 383 GGVGGIAKSLAKGLADK--------GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK-GEQ 453 (675)
Q Consensus 383 gG~~~l~~~L~~~l~~~--------Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~-~~~ 453 (675)
||++.++++|++.+.+. |++|+++++|++|..++++++ |++.+|+++.||+||+|++++.+...++. .+.
T Consensus 203 gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~ 281 (472)
T 1b37_A 203 RGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVT-VKTEDNSVYSADYVMVSASLGVLQSDLIQFKPK 281 (472)
T ss_dssp TCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEE-EEETTSCEEEESEEEECSCHHHHHTTSSEEESC
T ss_pred CcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEE-EEECCCCEEEcCEEEEecCHHHhccCCeeECCC
Confidence 99999999999988765 789999999999999888876 88999989999999999998876433332 356
Q ss_pred CChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEec
Q 005832 454 LPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTI 533 (675)
Q Consensus 454 lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~ 533 (675)
+|..+.+.+..+.+. ...+|++.+++++|+.+.....++..+. +.....++.. .|+. .| |.+++++++.
T Consensus 282 Lp~~~~~ai~~~~~~-~~~kv~l~~~~~~w~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~-~p-~~~~l~~~~~ 350 (472)
T 1b37_A 282 LPTWKVRAIYQFDMA-VYTKIFLKFPRKFWPEGKGREFFLYASS----RRGYYGVWQE----FEKQ-YP-DANVLLVTVT 350 (472)
T ss_dssp CCHHHHHHHHHSEEE-CEEEEEEECSSCCSCCSTTCSEEEECCS----STTSSCEEEE----CTTT-ST-TCCEEEEEEE
T ss_pred CCHHHHHHHHhcCCc-ceeEEEEECCCcCCCCCCCcceEEeccc----CCccceeeec----ccCC-CC-CCCEEEEEec
Confidence 888877777777665 4679999999988765322112222211 0111123322 1322 33 5566666553
Q ss_pred cc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc-CceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCC
Q 005832 534 CS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMP 611 (675)
Q Consensus 534 ~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p 611 (675)
.. ...|..+ .++++.+.+++.|+ +++|+.. ...+...+.++.+. .| ..|+|...+.+... ..++
T Consensus 351 ~~~a~~~~~~-------~~~e~~~~~l~~L~-~~~Pg~~~~~~~~~~~~~W~~~-~~---~~G~~~~~~~g~~~--~~~~ 416 (472)
T 1b37_A 351 DEESRRIEQQ-------SDEQTKAEIMQVLR-KMFPGKDVPDATDILVPRWWSD-RF---YKGTFSNWPVGVNR--YEYD 416 (472)
T ss_dssp HHHHHHHHTS-------CHHHHHHHHHHHHH-HHCTTSCCCCCSEEECCCTTTC-TT---TSSSEEECBTTCCH--HHHH
T ss_pred hHHHHHHHhC-------CHHHHHHHHHHHHH-HHcCCCCCCCCceEEecccCCC-CC---CCcccCCCCCCCCh--hHHH
Confidence 22 1234322 36899999999999 8999853 22233334443321 11 25666543322110 0123
Q ss_pred CCCCCCCcEEEeCCCccC--CCChhHHhhhHHHHHHHHHHHhCCc
Q 005832 612 FNTTGINGLYCVGDSCFP--GQGVIAVAFSGVMCAHRVAADIGLE 654 (675)
Q Consensus 612 ~~~t~i~gLylaG~~~~p--G~Gv~gA~~SG~~aA~~Il~~~g~~ 654 (675)
..++|++||||||+++++ +++|+||+.||++||++|++.++..
T Consensus 417 ~l~~p~~~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~~ 461 (472)
T 1b37_A 417 QLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKK 461 (472)
T ss_dssp HHHCCBTTEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccCCcEEEeecccCCCCCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 346889999999999987 4589999999999999999988643
No 12
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=99.96 E-value=1e-28 Score=274.02 Aligned_cols=427 Identities=16% Similarity=0.144 Sum_probs=250.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
.+||+|||||++||+||++|+++| ++|+|||+.+.+||++.+...+|+.+|.|++.+... ...+.++++++|+
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-----~~~~~~l~~~lg~ 78 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVAR-----KHILTDLIEAIGL 78 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETT-----STHHHHHHHHTTC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcc-----cHHHHHHHHHcCC
Confidence 579999999999999999999999 999999999999999999999999999999988753 2357889999999
Q ss_pred ceeEeeCCCeEEEEcCCCeEEEEcCCH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHh
Q 005832 235 EMEVIPDPTTVHFHLPNDLSVRVHREY-----SDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFG 309 (675)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (675)
+...........+.+.++....++... ... ..+...-..... ..+ . ..+.... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~-~~~~~~~~~~~~--~~~--~---~~~~~~~-----~~~------ 139 (475)
T 3lov_A 79 GEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDL-DLFRQTTLLTEE--EKQ--E---VADLLLH-----PSD------ 139 (475)
T ss_dssp GGGEEECCCCCEEEEETTEEEECCSSEETTEESCH-HHHTTCSSSCHH--HHH--H---HHHHHHS-----CCT------
T ss_pred cceEeecCCCceEEEECCEEEECCCcccccCcCch-HHHhhccCCChh--HHH--H---hhCcccC-----Ccc------
Confidence 866554322223333455555443221 000 011000000000 000 0 0000000 000
Q ss_pred hhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH--H----------HHH--Hh--
Q 005832 310 QFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS--M----------VLC--DR-- 373 (675)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~--~----------~~~--~~-- 373 (675)
.........++.+++.+.+..+....++...+....+.++.+.++.... + ... ..
T Consensus 140 ---------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~ 210 (475)
T 3lov_A 140 ---------SLRIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRP 210 (475)
T ss_dssp ---------TCCCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC
T ss_pred ---------cccCCCCCcCHHHHHHHHhCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcc
Confidence 0000122456667777666655555555554443334455444432110 0 000 00
Q ss_pred -------------hcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCC
Q 005832 374 -------------HFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNAT 440 (675)
Q Consensus 374 -------------~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g 440 (675)
....+++++||++.++++|++.+.+ ++|+++++|++|..+++++. |++.+| ++.||+||+|++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~-v~~~~g-~~~ad~vV~a~p 286 (475)
T 3lov_A 211 LDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISREDGRYR-LKTDHG-PEYADYVLLTIP 286 (475)
T ss_dssp --------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEETTEEE-EECTTC-CEEESEEEECSC
T ss_pred cccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEE-EEECCC-eEECCEEEECCC
Confidence 1234678999999999999988855 79999999999999888765 888888 799999999999
Q ss_pred hhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCC
Q 005832 441 RWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSL 520 (675)
Q Consensus 441 ~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ 520 (675)
++.+ ..++.+..+ ..+..+.+. ++.++++.+++++ +.+.....++++.+ .+.....+.+.+...+..
T Consensus 287 ~~~~-~~ll~~~~~-----~~~~~~~~~-~~~~v~l~~~~~~-~~~~~g~g~l~~~~-----~~~~~~~~~~~s~~~~~~ 353 (475)
T 3lov_A 287 HPQV-VQLLPDAHL-----PELEQLTTH-STATVTMIFDQQQ-SLPIEGTGFVVNRR-----APYSITACTAIDQKWNHS 353 (475)
T ss_dssp HHHH-HHHCTTSCC-----HHHHTCCEE-EEEEEEEEEECCS-SCSSSSSEEEECTT-----SSCSEEEEEEHHHHCTTT
T ss_pred HHHH-HHHcCccCH-----HHHhcCCCC-eEEEEEEEECCcC-CCCCCCEEEEecCC-----CCCceEEEEEEcccCCCC
Confidence 8876 456665333 344455444 4778999999876 32222222333321 111111223334444556
Q ss_pred CCCCceEEEEEecccc-hhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCccc-C
Q 005832 521 APEGHHILHIFTICSI-EDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYG-P 598 (675)
Q Consensus 521 ap~G~~~l~~~~~~~~-~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg-~ 598 (675)
.|+ ...+.+++.... ..+. +..++++.+.+++.|+ ++++.-. ..+...+. +| ...+. +
T Consensus 354 ~p~-~~~l~~~~~~~~~~~~~-------~~~~e~~~~~~~~~L~-~~~g~~~-~p~~~~v~------~w----~~a~p~~ 413 (475)
T 3lov_A 354 APD-HTVLRAFVGRPGNDHLV-------HESDEVLQQAVLQDLE-KICGRTL-EPKQVIIS------RL----MDGLPAY 413 (475)
T ss_dssp CTT-EEEEEEEECBTTBCGGG-------GSCHHHHHHHHHHHHH-HHHSSCC-CCSEEEEE------EE----EEEEECC
T ss_pred CCC-cEEEEEEeCCCCCCccc-------CCCHHHHHHHHHHHHH-HHhCCCC-CCeEEEEE------Ec----ccCCCCC
Confidence 666 556666653321 1222 2235789999999998 7775322 22211110 00 11111 1
Q ss_pred CCCCCCC-CCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHhCCcc
Q 005832 599 MPRGTPK-GLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 599 ~p~~~~~-~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
.+..... ..+ ++...++++|||+||+++. |.||++|+.||+++|++|++.++...
T Consensus 414 ~~g~~~~~~~~-~~~l~~~~~~l~~aG~~~~-g~g~~~a~~sG~~aA~~i~~~l~~~~ 469 (475)
T 3lov_A 414 TVGHADRIQRV-REEVLAQYPGIYLAGLAYD-GVGLPDCVASAKTMIESIELEQSHTD 469 (475)
T ss_dssp CTTHHHHHHHH-HHHHHHHSTTEEECSTTTS-CSSHHHHHHHHHHHHHHHHHTC----
T ss_pred CCChHHHHHHH-HHHHHhhCCCEEEEccCCC-CCCHHHHHHHHHHHHHHHHHHhhccc
Confidence 1110000 000 0111245689999999864 67999999999999999999887543
No 13
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=99.96 E-value=1.5e-27 Score=262.60 Aligned_cols=399 Identities=18% Similarity=0.198 Sum_probs=247.8
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCC-eE---------------EccccccccCCC
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDG-YT---------------FDVGSSVMFGFS 217 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g-~~---------------~d~G~~~~~g~~ 217 (675)
++..+||||||||++||+||++|+++|++|+|+|+++.+||+++|+..+| +. ++.|.++..+..
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~ 87 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI 87 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence 34568999999999999999999999999999999999999999987766 22 334444443332
Q ss_pred CCC--chHHHHHHHHHcCCc--eeEeeCCCeEEEEcCCCeEEEEcCC-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Q 005832 218 DKG--NLNLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHRE-YSDFVAELTSKFPHEKEGVLAFYGECWKIFNA 292 (675)
Q Consensus 218 ~~~--~~~~~~~ll~~lGl~--~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 292 (675)
+.- ....+.+++.++|+. +++.+....+ .+.+|..+.++.+ .+.+...+...+ ++..+.+|+.......
T Consensus 88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~-- 161 (453)
T 2bcg_G 88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSY--VFKQGKIYKVPANEIEAISSPLMGIF--EKRRMKKFLEWISSYK-- 161 (453)
T ss_dssp CCBEETTSHHHHHHHHHTGGGTCCEEECCCEE--EEETTEEEECCSSHHHHHHCTTSCHH--HHHHHHHHHHHHHHCB--
T ss_pred cceeecCcHHHHHHHhcCCccceEEEEcccee--EEeCCeEEECCCChHHHHhhhccchh--hHHHHHHHHHHHHHhc--
Confidence 111 224678888888874 2333333323 3457877777777 455444332222 3344444444322110
Q ss_pred hhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH---HH
Q 005832 293 LNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS---MV 369 (675)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~---~~ 369 (675)
.. .+.. + . ...+...++.+++++++.++.++.++.....+.........|..... ..
T Consensus 162 -----~~---~p~~----~--~------~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~ 221 (453)
T 2bcg_G 162 -----ED---DLST----H--Q------GLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILL 221 (453)
T ss_dssp -----TT---BGGG----S--T------TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHH
T ss_pred -----cC---Cchh----h--h------ccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHH
Confidence 00 0100 0 0 00234568889999999999999887654332111011112332222 11
Q ss_pred HH---Hhhc-CcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEe--CCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 370 LC---DRHF-GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILE--QGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 370 ~~---~~~~-~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+. ..+. +.+.+|+||++.++++|++.+++.|++|+++++|++|..+ ++++++|++ +|+++.||.||+|++++.
T Consensus 222 ~~~s~~~~~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~ 300 (453)
T 2bcg_G 222 YCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFP 300 (453)
T ss_dssp HHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCG
T ss_pred HHHHHHhhcCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccc
Confidence 11 1122 3455999999999999999999999999999999999998 888888887 577899999999999874
Q ss_pred HHhhccCCCCCChHHHHHHHhhc-cCCcEEEEEEeeccccCCC-CCCccceeeccchhhhccCCCceEEecCCCCCCCCC
Q 005832 444 TFGKLLKGEQLPKEEENFQKLYV-KAPSFLSIHMGVKAEVLPP-DTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA 521 (675)
Q Consensus 444 ~~~~Ll~~~~lp~~~~~~~~~~~-~~~s~~~v~l~l~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~a 521 (675)
. .+ ..+. .+++.+++ ++++..+. ....+.++++.. .+ .+...+|++.++..| +++
T Consensus 301 ~--~l--------------~~~~~~~~~~~~i---~~~~~~~~~~~~~~~ii~~~~--~~-~~~~~~~v~~~s~~d-~~a 357 (453)
T 2bcg_G 301 E--KC--------------KSTGQRVIRAICI---LNHPVPNTSNADSLQIIIPQS--QL-GRKSDIYVAIVSDAH-NVC 357 (453)
T ss_dssp G--GE--------------EEEEEEEEEEEEE---ESSCCTTSTTCSSEEEEECGG--GT-TCSSCEEEEEEEGGG-TSS
T ss_pred h--hh--------------cccCCcceeEEEE---EccccCCCCCCccEEEEeCcc--cc-CCCCCEEEEEeCCCC-CCC
Confidence 2 11 1122 33344443 66654211 122344455431 11 122358999999888 899
Q ss_pred CCCceEEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCC
Q 005832 522 PEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPR 601 (675)
Q Consensus 522 p~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~ 601 (675)
|+|+++++++++.+..+ . .++ .+ ..++ ++.|.....+...+ .|.+.
T Consensus 358 P~G~~~~~v~~~~~~~~-----~------~~~-l~---~~~~-~l~~~~~~~~~~~~----------------~~~~~-- 403 (453)
T 2bcg_G 358 SKGHYLAIISTIIETDK-----P------HIE-LE---PAFK-LLGPIEEKFMGIAE----------------LFEPR-- 403 (453)
T ss_dssp CTTCEEEEEEEECCSSC-----H------HHH-TH---HHHG-GGCSCSEEEEEEEE----------------EEEES--
T ss_pred CCCcEEEEEEEecCCCC-----H------HHH-HH---HHHH-HhhhHHHhhccchh----------------eeeec--
Confidence 99999999998875321 0 112 22 3344 55565333222211 12111
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHH
Q 005832 602 GTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 602 ~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il 648 (675)
....-+|+|++|++- ....+++++.+++.++++|.
T Consensus 404 -----------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 438 (453)
T 2bcg_G 404 -----------EDGSKDNIYLSRSYD-ASSHFESMTDDVKDIYFRVT 438 (453)
T ss_dssp -----------SCSTTTSEEECCCCC-SCSBSHHHHHHHHHHHHHHH
T ss_pred -----------CCCCCCCEEECCCCC-ccccHHHHHHHHHHHHHHHH
Confidence 012237999999984 34578999999999999998
No 14
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=99.96 E-value=2.9e-28 Score=271.35 Aligned_cols=425 Identities=14% Similarity=0.139 Sum_probs=241.6
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee-----------------CCeEEccccccccCCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-----------------DGYTFDVGSSVMFGFS 217 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-----------------~g~~~d~G~~~~~g~~ 217 (675)
+..+||+|||||++||+||++|+++|++|+|||+.+.+||++.+... +|..+|.|++.+...
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 87 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQS- 87 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETT-
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccH-
Confidence 34689999999999999999999999999999999999999988775 577889888877631
Q ss_pred CCCchHHHHHHHHHcCCceeEeeCCC-eEEEE-cCC----CeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 005832 218 DKGNLNLITQALAAVGCEMEVIPDPT-TVHFH-LPN----DLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFN 291 (675)
Q Consensus 218 ~~~~~~~~~~ll~~lGl~~~~~~~~~-~~~~~-~~~----g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~ 291 (675)
. .+.++++++|+......... ...++ ..+ |..+..+.....+... +..++.. ..
T Consensus 88 ----~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~~~l~~~----~~ 147 (489)
T 2jae_A 88 ----H-ITLDYCRELGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFGY-----------MSELLKK----AT 147 (489)
T ss_dssp ----S-THHHHHHHHTCCEEEECCCCTTSEEECCCSSTTTTCCEEHHHHHHHHHHH-----------HHHHHHH----HH
T ss_pred ----H-HHHHHHHHcCCceEEccccCCCceEEecCCcccCCccccHHHHhhhhhcc-----------HHHHHHH----HH
Confidence 2 57788999999765433221 11122 232 4333321111111000 0000000 00
Q ss_pred HhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCC--------CHHHHHHHhhhhh--hhcc-CCCCC
Q 005832 292 ALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIK--------DPQLLSFIDAECF--IVST-INALQ 360 (675)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--------~~~l~~~~~~~~~--~~~~-~~~~~ 360 (675)
....+. ..... .+ ..++.++++++.. ...+..++..... ..+. ..+..
T Consensus 148 ~~~~~~-~~~~~------------~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (489)
T 2jae_A 148 DQGALD-QVLSR------------ED--------KDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFA 206 (489)
T ss_dssp HHTTTT-TTSCH------------HH--------HHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCC
T ss_pred hccccc-cccch------------hh--------HHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcC
Confidence 000000 00000 00 0111222222100 0000000000000 0000 00111
Q ss_pred chHHHHHHH---HH----HhhcCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC---CEE
Q 005832 361 TPMINASMV---LC----DRHFGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REF 430 (675)
Q Consensus 361 ~p~~~~~~~---~~----~~~~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G---~~i 430 (675)
......... +. .....++++++||++.|+++|++.+.+ ++|+++++|++|..++++++ |++.+| +++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~~~ 283 (489)
T 2jae_A 207 MQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVT-VEYTAGGSKKSI 283 (489)
T ss_dssp HHHHHHHTTTTTGGGGGCTTTSSSEEEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEETTEEE-EEEEETTEEEEE
T ss_pred HHHHhhhhHHHHHhhhhccccCccEEeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEE-EEEecCCeEEEE
Confidence 111111000 00 011245778999999999999998843 78999999999999988876 777776 579
Q ss_pred EcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCcc-ceeeccchhhhccCCCceE
Q 005832 431 YAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCH-HFVLEDDWNRLEEPYGSIF 509 (675)
Q Consensus 431 ~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~i~ 509 (675)
.||+||+|+++..+ ..++. ++|+.+.+.+..+.++ +..+|++.+++++|+...... .+...+ .+. .+
T Consensus 284 ~ad~vI~a~p~~~l-~~l~~--~l~~~~~~~l~~~~~~-~~~kv~l~~~~~~w~~~~~~~g~~~~~~------~~~--~~ 351 (489)
T 2jae_A 284 TADYAICTIPPHLV-GRLQN--NLPGDVLTALKAAKPS-SSGKLGIEYSRRWWETEDRIYGGASNTD------KDI--SQ 351 (489)
T ss_dssp EESEEEECSCHHHH-TTSEE--CCCHHHHHHHHTEECC-CEEEEEEEESSCHHHHTTCCCSCEEEES------STT--CE
T ss_pred ECCEEEECCCHHHH-HhCcc--CCCHHHHHHHHhCCCc-cceEEEEEeCCCCccCCCCcccccccCC------CCc--eE
Confidence 99999999998754 55554 6888877777787776 478999999988765432211 121111 222 33
Q ss_pred EecCCCCCCCCCCCCceEEEEEecc-cchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCC-CcCceEEEEecChhHHHH
Q 005832 510 LSIPTVLDSSLAPEGHHILHIFTIC-SIEDWEGLAQKDYDAKKELVADEIINRLENKLFPG-LKQSIAFREIGSPKTHRR 587 (675)
Q Consensus 510 ~~~~s~~d~~~ap~G~~~l~~~~~~-~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~-l~~~i~~~~v~tP~~~~~ 587 (675)
+..++..++ .|++ .++..++.. ....|..+ .++++.+.+++.|+ +++|+ ++..++...+ .+|.+
T Consensus 352 ~~~~s~~~~--~~~~-~l~~~~~~g~~~~~~~~~-------~~~~~~~~~l~~L~-~~~~~~~~~~~~~~~~---~~W~~ 417 (489)
T 2jae_A 352 IMFPYDHYN--SDRG-VVVAYYSSGKRQEAFESL-------THRQRLAKAIAEGS-EIHGEKYTRDISSSFS---GSWRR 417 (489)
T ss_dssp EECCSSSTT--SSCE-EEEEEEEETHHHHHHHTS-------CHHHHHHHHHHHHH-HHHCGGGGSSEEEEEE---EEGGG
T ss_pred EEeCCCCCC--CCCC-EEEEEeeCCchhhhhhcC-------CHHHHHHHHHHHHH-HHcCcchhhhccccEE---EEcCC
Confidence 444554332 2322 223234432 22334333 35788999999998 88887 6666654332 23433
Q ss_pred HhcCCCCcccCC-------CCCCCCCCCCCCCCCCCCCcEEEeCCCc-cCCCChhHHhhhHHHHHHHHHHHhCCc
Q 005832 588 YLARDQGTYGPM-------PRGTPKGLLGMPFNTTGINGLYCVGDSC-FPGQGVIAVAFSGVMCAHRVAADIGLE 654 (675)
Q Consensus 588 ~~~~~~G~yg~~-------p~~~~~~~~~~p~~~t~i~gLylaG~~~-~pG~Gv~gA~~SG~~aA~~Il~~~g~~ 654 (675)
.. ...|+|... |.... . .++...++++||||||+++ +.++||+||+.||++||++|++.+..+
T Consensus 418 ~~-~~~G~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~l~faG~~~~~~~~~v~gAi~sg~~aA~~i~~~l~~~ 488 (489)
T 2jae_A 418 TK-YSESAWANWAGSGGSHGGAAT-P--EYEKLLEPVDKIYFAGDHLSNAIAWQHGALTSARDVVTHIHERVAQE 488 (489)
T ss_dssp ST-TTSCSSCEETTC-------CC-H--HHHHHTSCBTTEEECSGGGBSSTTSHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-CCCCcchhcccccCCCcccch-h--hHHHHhCCCCcEEEeEHHhccCccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22 124444322 21110 0 0122346789999999987 567899999999999999999876543
No 15
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=99.95 E-value=5e-27 Score=261.96 Aligned_cols=438 Identities=16% Similarity=0.133 Sum_probs=245.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe--eCCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE--RDGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~--~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
..+||+|||||++||+||+.|+++|++|+|+|+.+++||++.++. ..|+.+|.|++++.. ....+.++++++|
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~g 106 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE-----KHRIVREYIRKFD 106 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEET-----TCHHHHHHHHHTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccc-----hHHHHHHHHHHhC
Confidence 467999999999999999999999999999999999999999887 568999999998864 2457889999999
Q ss_pred CceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHH---HHH-hCCCcH-HHHHHHHHHH-HHHHHHhhhhhhhccchhhHH
Q 005832 234 CEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAE---LTS-KFPHEK-EGVLAFYGEC-WKIFNALNSLELKSLEEPIYL 307 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---l~~-~~p~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (675)
+............+...++..... ..+... +.. ..+.+. .....++... .+....+.. ..
T Consensus 107 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----- 172 (498)
T 2iid_A 107 LRLNEFSQENDNAWYFIKNIRKKV----GEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKR-----TN----- 172 (498)
T ss_dssp CCEEEECSCCTTSEEEETTEEEEH----HHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHH-----SC-----
T ss_pred CCceeecccCCccEEEeCCeeecc----cccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhh-----cc-----
Confidence 875433211100111112322111 000000 000 000000 0011111110 000000000 00
Q ss_pred HhhhhcChhhhhHHhhhccccHHHHHHHhCC-CHHHHHHHhhhhhhhccCCCCCchHHHHHHH-HHHhhcCcccccCCCH
Q 005832 308 FGQFFKRPLECLTLAYYLPQNAGNIARKYIK-DPQLLSFIDAECFIVSTINALQTPMINASMV-LCDRHFGGINYPVGGV 385 (675)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~~p~gG~ 385 (675)
. ......+...++.+++.+... ++.....+........ ............ ........++++.||+
T Consensus 173 --------~-~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 240 (498)
T 2iid_A 173 --------C-SYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDS---GYYVSFIESLKHDDIFAYEKRFDEIVDGM 240 (498)
T ss_dssp --------H-HHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGG---GTTSBHHHHHHHHHHHTTCCCEEEETTCT
T ss_pred --------H-HHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCccc---chhHHHHHHHHHHhccccCcceEEeCCcH
Confidence 0 000112233455566655431 2332222221100000 000111111110 0111224567889999
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC----EEEcCEEEECCChhhHHhhccCCCCCChHHHHH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR----EFYAKTIISNATRWDTFGKLLKGEQLPKEEENF 461 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~----~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~ 461 (675)
+.|+++|++.+.+ +|+++++|++|..+++++ .|++.+|+ ++.||+||+|+++..+ ..+.-.+.+|..+.+.
T Consensus 241 ~~l~~~l~~~l~~---~i~~~~~V~~I~~~~~~v-~v~~~~~~~~~~~~~ad~vI~t~p~~~~-~~i~f~p~Lp~~~~~a 315 (498)
T 2iid_A 241 DKLPTAMYRDIQD---KVHFNAQVIKIQQNDQKV-TVVYETLSKETPSVTADYVIVCTTSRAV-RLIKFNPPLLPKKAHA 315 (498)
T ss_dssp THHHHHHHHHTGG---GEESSCEEEEEEECSSCE-EEEEECSSSCCCEEEESEEEECSCHHHH-TTSEEESCCCHHHHHH
T ss_pred HHHHHHHHHhccc---ccccCCEEEEEEECCCeE-EEEEecCCcccceEEeCEEEECCChHHH-hheecCCCCCHHHHHH
Confidence 9999999988854 799999999999988776 47777665 4899999999998754 4543334699888888
Q ss_pred HHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEeccc-chhhc
Q 005832 462 QKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICS-IEDWE 540 (675)
Q Consensus 462 ~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~-~~~w~ 540 (675)
+..+.+++ ..+|++.+++++|+.+.......+.+ .+. .++.+++. ..|+|..++..++... ...|.
T Consensus 316 i~~l~~~~-~~kv~l~~~~~~w~~~~~~~~~~~~~------~~~--~~~~~~s~----~~p~g~~~L~~~~~g~~a~~~~ 382 (498)
T 2iid_A 316 LRSVHYRS-GTKIFLTCTTKFWEDDGIHGGKSTTD------LPS--RFIYYPNH----NFTNGVGVIIAYGIGDDANFFQ 382 (498)
T ss_dssp HHHCCEEC-EEEEEEEESSCGGGGGTCCSSEEEES------STT--CEEECCSS----CCTTSCEEEEEEEEHHHHHTTT
T ss_pred HHhCCCcc-eeEEEEEeCCCCccCCCccCCcccCC------CCc--ceEEECCC----CCCCCCcEEEEEeCCccHhhhh
Confidence 88887775 67999999998875421111111111 121 23344431 2466777776655432 12233
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCc----eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCC
Q 005832 541 GLAQKDYDAKKELVADEIINRLENKLFPGLKQS----IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTG 616 (675)
Q Consensus 541 ~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~----i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~ 616 (675)
.+ .++++.+.+++.|+ ++++-.... .....+ ..|.. .....|+|...+...... . .+...++
T Consensus 383 ~~-------~~~~~~~~~l~~L~-~~~g~~~~~~~~~~~~~~~---~~W~~-~p~~~G~~~~~~~~~~~~-~-~~~l~~p 448 (498)
T 2iid_A 383 AL-------DFKDCADIVFNDLS-LIHQLPKKDIQSFCYPSVI---QKWSL-DKYAMGGITTFTPYQFQH-F-SDPLTAS 448 (498)
T ss_dssp TS-------CHHHHHHHHHHHHH-HHHTCCHHHHHHHEEEEEE---EEGGG-CTTTCSSEECCCTTHHHH-H-HHHHHCC
T ss_pred cC-------CHHHHHHHHHHHHH-HHcCCChhhhhhhcCccEE---EecCC-CCCCCceeeecCCcchHH-H-HHHHhCC
Confidence 32 34678889999998 776521110 111111 11211 111255565332211100 0 1122356
Q ss_pred CCcEEEeCCCccC-CCChhHHhhhHHHHHHHHHHHhCCccc
Q 005832 617 INGLYCVGDSCFP-GQGVIAVAFSGVMCAHRVAADIGLEKK 656 (675)
Q Consensus 617 i~gLylaG~~~~p-G~Gv~gA~~SG~~aA~~Il~~~g~~~~ 656 (675)
++||||||+++.. .++|+||+.||++||++|++.++.+..
T Consensus 449 ~~~l~fAGe~t~~~~g~~~GAi~SG~raA~~i~~~l~~~~~ 489 (498)
T 2iid_A 449 QGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASENPSG 489 (498)
T ss_dssp BTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CCcEEEEEcccccCCcCHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 8999999999843 357999999999999999999876543
No 16
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=99.95 E-value=2.4e-26 Score=251.48 Aligned_cols=393 Identities=16% Similarity=0.246 Sum_probs=249.6
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe--e-------------------CCeEEcccccc
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE--R-------------------DGYTFDVGSSV 212 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~--~-------------------~g~~~d~G~~~ 212 (675)
++..+||+|||+|++||++|.+|+++|++|+|+|+++.+||+++|+. . .++.+|.|+++
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~ 82 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF 82 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence 34568999999999999999999999999999999999999999987 1 34677777777
Q ss_pred ccCCCCCCchHHHHHHHHHcCCc--eeEeeCCCeEEEEcCCCeEEEEcCCH-HHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 005832 213 MFGFSDKGNLNLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHREY-SDFVAELTSKFPHEKEGVLAFYGECWKI 289 (675)
Q Consensus 213 ~~g~~~~~~~~~~~~ll~~lGl~--~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~~~~~~ 289 (675)
+.. ...+.++++++|+. +++.+... .+.+.+|..+.++.+. +.+...+...+ ++..+.+|+....+
T Consensus 83 l~~------~~~l~~ll~~lgl~~~l~~~~~~~--~~~~~~g~~~~~p~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~- 151 (433)
T 1d5t_A 83 LMA------NGQLVKMLLYTEVTRYLDFKVVEG--SFVYKGGKIYKVPSTETEALASNLMGMF--EKRRFRKFLVFVAN- 151 (433)
T ss_dssp EET------TSHHHHHHHHHTGGGGCCEEECCE--EEEEETTEEEECCCSHHHHHHCSSSCHH--HHHHHHHHHHHHHH-
T ss_pred eec------cchHHHHHHHcCCccceEEEEeCc--eEEeeCCEEEECCCCHHHHhhCcccChh--hHHHHHHHHHHHHh-
Confidence 652 23567888888875 23333332 2335678777777774 43433322222 33344444433221
Q ss_pred HHHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHH-
Q 005832 290 FNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASM- 368 (675)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~- 368 (675)
. .. ..+.. .....+...++.+++++++.++.++.++........+..+...|+.....
T Consensus 152 ---~---~~---~~p~~------------~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~ 210 (433)
T 1d5t_A 152 ---F---DE---NDPKT------------FEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINR 210 (433)
T ss_dssp ---C---CT---TCGGG------------GTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHH
T ss_pred ---h---cc---cCchh------------ccccccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHH
Confidence 0 00 00000 00112345788999999999999998886543222223344445442221
Q ss_pred --HHHHh---h-cCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 369 --VLCDR---H-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 369 --~~~~~---~-~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+... . .+.+++|+||++.++++|++.+++.|++|+++++|++|..+++++++|+. +|+++.||.||+|++++
T Consensus 211 ~~~~~~s~~~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad~VV~a~~~~ 289 (433)
T 1d5t_A 211 IKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCKQLICDPSYV 289 (433)
T ss_dssp HHHHHHSCCSSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECSEEEECGGGC
T ss_pred HHHHHHHHHhcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECCEEEECCCCC
Confidence 22111 1 12367999999999999999999999999999999999999999888875 77889999999999987
Q ss_pred hHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCC-CCccceeeccchhhhccCCCceEEecCCCCCCCCC
Q 005832 443 DTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD-TDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA 521 (675)
Q Consensus 443 ~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~a 521 (675)
.. .+. .+....+.+. .++.+..+.+ ...|+++++.. .+ .....+|+++++ .||+++
T Consensus 290 ~~---~~~-------------~~~~~~~~~~---il~~~~~~~~~~~~~~i~~~~~--~~-~~~~~~~v~~~s-~d~~~a 346 (433)
T 1d5t_A 290 PD---RVR-------------KAGQVIRIIC---ILSHPIKNTNDANSCQIIIPQN--QV-NRKSDIYVCMIS-YAHNVA 346 (433)
T ss_dssp GG---GEE-------------EEEEEEEEEE---EESSCCTTSTTCSSEEEEECGG--GT-TCSSCEEEEEEE-GGGTSS
T ss_pred cc---ccc-------------ccCcceeEEE---EEcCcccccCCCceEEEEeCcc--cc-CCCCCEEEEEEC-CCCccc
Confidence 52 111 1111222222 2665542111 13455566531 11 122358899999 999999
Q ss_pred CCCceEEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCC
Q 005832 522 PEGHHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPR 601 (675)
Q Consensus 522 p~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~ 601 (675)
|+|+++++++++.+..+ . + +++...++ ++.|..+..+..... |-+.
T Consensus 347 P~G~~~~~~~~~~p~~~-----~-------~---~~l~~~~~-~l~~~~~~~~~~~~~----------------~~~~-- 392 (433)
T 1d5t_A 347 AQGKYIAIASTTVETTD-----P-------E---KEVEPALG-LLEPIDQKFVAISDL----------------YEPI-- 392 (433)
T ss_dssp CTTCEEEEEEEECCSSC-----H-------H---HHTHHHHT-TTCSCSEEEEEEEEE----------------EEES--
T ss_pred CCCCEEEEEEEecCCCC-----H-------H---HHHHHHHH-HhhhHHhheecccee----------------eeec--
Confidence 99999999988875321 0 1 22334444 555654432222211 1111
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHH
Q 005832 602 GTPKGLLGMPFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 602 ~~~~~~~~~p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il 648 (675)
....-+|+|+++++- .+..+++++..++..-++|.
T Consensus 393 -----------~~~~~~~~~~~~~~d-~~~~~e~~~~~~~~~~~~~~ 427 (433)
T 1d5t_A 393 -----------DDGSESQVFCSCSYD-ATTHFETTCNDIKDIYKRMA 427 (433)
T ss_dssp -----------CCSTTTCEEECCCCC-SCSBSHHHHHHHHHHHHHHH
T ss_pred -----------CCCCCCCEEECCCCC-ccccHHHHHHHHHHHHHHHh
Confidence 112237999999873 34567999998888888875
No 17
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=99.95 E-value=4.3e-28 Score=271.44 Aligned_cols=419 Identities=17% Similarity=0.151 Sum_probs=221.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCCCCcceeEe-eCCeEEccccccccCCCCCCchHHHHHHHHHc
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSSGYYE-RDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~~t~~-~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (675)
+..+||||||||++||+||++|+++ |++|+|||+.+++||+++|+. .+|+.+|.|+|+++.. ...+.++++++
T Consensus 8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~-----~~~v~~l~~e~ 82 (513)
T 4gde_A 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSH-----YKYFDDCLDEA 82 (513)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCC-----BHHHHHHHHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCC-----CHHHHHHHHHh
Confidence 4468999999999999999999985 999999999999999999864 6899999999999752 34567888887
Q ss_pred CCce-eEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005832 233 GCEM-EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 233 Gl~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
+... ..........+ +.+|..+..+-... +. ..+ .......... ..........
T Consensus 83 ~~~~~~~~~~~~~~~i-~~~g~~~~~p~~~~-----~~-~~~--~~~~~~~~~~---~~~~~~~~~~------------- 137 (513)
T 4gde_A 83 LPKEDDWYTHQRISYV-RCQGQWVPYPFQNN-----IS-MLP--KEEQVKCIDG---MIDAALEARV------------- 137 (513)
T ss_dssp SCSGGGEEEEECCEEE-EETTEEEESSGGGG-----GG-GSC--HHHHHHHHHH---HHHHHHHHHT-------------
T ss_pred CCccceeEEecCceEE-EECCeEeecchhhh-----hh-hcc--hhhHHHHHHH---HHHHHHhhhc-------------
Confidence 6532 22222222222 23455555432110 00 000 0000000000 0000000000
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHH------------HHHHHHHHhh-----
Q 005832 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMI------------NASMVLCDRH----- 374 (675)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~------------~~~~~~~~~~----- 374 (675)
......++.+++.+.+.......++..+..-..+..+.+.++. ..........
T Consensus 138 ----------~~~~~~s~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (513)
T 4gde_A 138 ----------ANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNW 207 (513)
T ss_dssp ----------CCSCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSC
T ss_pred ----------ccccccCHHHHHHHhhhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 0001122223332222222222222221111111222221111 0000000000
Q ss_pred --cC-cccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005832 375 --FG-GINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 375 --~~-g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.. ..+.++||++.++++|++.+++.|++|+++++|++|..++++ |++.+|+++.||+||+|++...+. .++.+
T Consensus 208 ~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~---v~~~~G~~~~ad~vI~t~P~~~l~-~~l~~ 283 (513)
T 4gde_A 208 GPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT---VTLQDGTTIGYKKLVSTMAVDFLA-EAMND 283 (513)
T ss_dssp BTTBEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE---EEETTSCEEEEEEEEECSCHHHHH-HHTTC
T ss_pred ccccceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCE---EEEcCCCEEECCEEEECCCHHHHH-HhcCc
Confidence 01 123458999999999999999999999999999999988775 458899999999999999887664 55543
Q ss_pred CCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCce-----
Q 005832 452 EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHH----- 526 (675)
Q Consensus 452 ~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~----- 526 (675)
.........+.+ .+..+|+++++........+.+++++.+. +-++.. +..++.+.|..+|++..
T Consensus 284 ----~~~~~~~~~l~y-~~~~~v~l~~~~~~~~~~~~~~~~y~~~~----~~~f~R--i~~~~n~sp~~~p~~~~~~~~~ 352 (513)
T 4gde_A 284 ----QELVGLTKQLFY-SSTHVIGVGVRGSRPERIGDKCWLYFPED----NCPFYR--ATIFSNYSPYNQPEASAALPTM 352 (513)
T ss_dssp ----HHHHHHHTTCCE-EEEEEEEEEEESSCCTTTTTCCEEECCST----TCSCSE--EECGGGTCGGGSCCTTCCEECC
T ss_pred ----hhhHhhhhcccC-CceEEEEEEEeccccccccccceeeccCC----CCceeE--EEecCCCCcccCCCCCceEEEE
Confidence 222333344443 35778888888765333333345544331 012211 12233333333343333
Q ss_pred ----------------EEEEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCC-CCcCceEEEEec-ChhHHHHH
Q 005832 527 ----------------ILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFP-GLKQSIAFREIG-SPKTHRRY 588 (675)
Q Consensus 527 ----------------~l~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P-~l~~~i~~~~v~-tP~~~~~~ 588 (675)
.++.+.....++ +.++..+|++.+.+++.|. ++.+ .-.+.++..++. -|.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~de~l~~~~~~~L~-~~~~i~~~~~i~~~~v~r~~~----- 420 (513)
T 4gde_A 353 QLADGSRPQSTEAKEGPYWSIMLEVSES------SMKPVNQETILADCIQGLV-NTEMLKPTDEIVSTYHRRFDH----- 420 (513)
T ss_dssp EETTSCCCSCCSEECCCEEEEEEEEEEB------TTBCCCTTTHHHHHHHHHH-HTTSSCTTCEEEEEEEEEEEE-----
T ss_pred EeccCCCcccccCCcceEEEEEecccch------hccCCCHHHHHHHHHHHHH-HhcCCCCccceEEEEEEECCC-----
Confidence 333322211111 1122345788999999998 5443 223444444331 111
Q ss_pred hcCCCCcccCCCCCCCCCCCC--CCCCCCCCCcEEEeCCCc---cCCCChhHHhhhHHHHHHHHHH
Q 005832 589 LARDQGTYGPMPRGTPKGLLG--MPFNTTGINGLYCVGDSC---FPGQGVIAVAFSGVMCAHRVAA 649 (675)
Q Consensus 589 ~~~~~G~yg~~p~~~~~~~~~--~p~~~t~i~gLylaG~~~---~pG~Gv~gA~~SG~~aA~~Il~ 649 (675)
+|-....+.. ..+. ++.... +|||++|-.. +....|.+|+++|..||+.|+.
T Consensus 421 ------ayP~y~~~~~-~~~~~~~~~l~~--~~l~~~GR~g~~~Y~~~n~D~a~~~g~~aa~~I~~ 477 (513)
T 4gde_A 421 ------GYPTPTLERE-GTLTQILPKLQD--KDIWSRGRFGSWRYEVGNQDHSFMLGVEAVDNIVN 477 (513)
T ss_dssp ------EEECCBTTHH-HHHHHHHHHHHH--TTEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ------eecccCHhHH-HHHHHHHHHHhh--cCcEEecCCcccCcCCCCHHHHHHHHHHHHHHHHc
Confidence 1100000000 0000 000011 5999999543 2223799999999999999986
No 18
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.94 E-value=4.8e-25 Score=241.21 Aligned_cols=412 Identities=16% Similarity=0.121 Sum_probs=236.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeC---CeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD---GYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~---g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
+||||||||++||+||++|+++|++|+|||+.+.+||++.+.... |..++.|++++.... ...+.++++++|+
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~----~~~~~~~~~~~g~ 77 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKH----HPRLAAELDRYGI 77 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTT----CHHHHHHHHHHTC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCC----cHHHHHHHHHhCC
Confidence 799999999999999999999999999999999999999988766 999999998886421 3456677888898
Q ss_pred ceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 005832 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (675)
+...........+...++............. ..+...+. .+......+. ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~l~~~~~~~~---~~~~---------- 130 (431)
T 3k7m_X 78 PTAAASEFTSFRHRLGPTAVDQAFPIPGSEA-----------VAVEAATY---TLLRDAHRID---LEKG---------- 130 (431)
T ss_dssp CEEECCCCCEECCBSCTTCCSSSSCCCGGGH-----------HHHHHHHH---HHHHHHTTCC---TTTC----------
T ss_pred eeeecCCCCcEEEEecCCeecCCCCCCHHHH-----------HHHHHHHH---HHHHHHHhcC---CCCC----------
Confidence 7544322221111011221100000000000 11111111 1111110000 0000
Q ss_pred hhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHh-------hcCcccccCCCHHH
Q 005832 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDR-------HFGGINYPVGGVGG 387 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------~~~g~~~p~gG~~~ 387 (675)
........+. .+..+++.+...++..+.++........+..+.+.+.......+... .......+.+|+..
T Consensus 131 -~~~~~~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 208 (431)
T 3k7m_X 131 -LENQDLEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSAD 208 (431)
T ss_dssp -TTSSSCGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCEEETTCTHH
T ss_pred -ccCcchhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecchhhhcCCcHHH
Confidence 0000011122 56677777777777766666554443444555555554332211110 00111156888888
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhcc
Q 005832 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVK 467 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~ 467 (675)
+++.+.+ +.| +|+++++|++|..++++++ |++.+|+++.||+||+|+|+..+ ..+.-.+.+|....+.+....+
T Consensus 209 l~~~~~~---~~g-~i~~~~~V~~i~~~~~~v~-v~~~~g~~~~ad~vi~a~~~~~l-~~i~~~p~l~~~~~~~~~~~~~ 282 (431)
T 3k7m_X 209 LVDAMSQ---EIP-EIRLQTVVTGIDQSGDVVN-VTVKDGHAFQAHSVIVATPMNTW-RRIVFTPALPERRRSVIEEGHG 282 (431)
T ss_dssp HHHHHHT---TCS-CEESSCCEEEEECSSSSEE-EEETTSCCEEEEEEEECSCGGGG-GGSEEESCCCHHHHHHHHHCCC
T ss_pred HHHHHHh---hCC-ceEeCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCcchH-hheeeCCCCCHHHHHHHHhCCC
Confidence 8877654 346 9999999999998877765 88899988999999999998764 4554345788877766666655
Q ss_pred CCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhH
Q 005832 468 APSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDY 547 (675)
Q Consensus 468 ~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~ 547 (675)
.. ..+|++.++.++ ++ ++..++ .+...++...+ ..++..++..+..... +.. .
T Consensus 283 ~~-~~kv~~~~~~~~--~~-----i~~~~d-----~~~~~~~~~~~-------~~~~~~~l~~~~~g~~--~~~---~-- 335 (431)
T 3k7m_X 283 GQ-GLKILIHVRGAE--AG-----IECVGD-----GIFPTLYDYCE-------VSESERLLVAFTDSGS--FDP---T-- 335 (431)
T ss_dssp CC-EEEEEEEEESCC--TT-----EEEEBS-----SSSSEEEEEEE-------CSSSEEEEEEEEETTT--CCT---T--
T ss_pred cc-eEEEEEEECCCC--cC-----ceEcCC-----CCEEEEEeCcC-------CCCCCeEEEEEecccc--CCC---C--
Confidence 44 578999998765 21 221111 12222332211 1134445555543322 211 1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCc
Q 005832 548 DAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSC 627 (675)
Q Consensus 548 ~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~ 627 (675)
++ +++.+.|+ +++|++. .+.... ..|.. .....|+|...+.+.... ..+..+.|+++|||||..|
T Consensus 336 ---~~---~~~~~~l~-~~~~~~~--~~~~~~---~~W~~-d~~~~G~~~~~~~g~~~~--~~~~l~~p~g~~~fAGe~t 400 (431)
T 3k7m_X 336 ---DI---GAVKDAVL-YYLPEVE--VLGIDY---HDWIA-DPLFEGPWVAPRVGQFSR--VHKELGEPAGRIHFVGSDV 400 (431)
T ss_dssp ---CH---HHHHHHHH-HHCTTCE--EEEEEC---CCTTT-CTTTSSSSCCCCTTTTTT--SSGGGGSCBTTEEECSGGG
T ss_pred ---CH---HHHHHHHH-HhcCCCC--ccEeEe---cccCC-CCCCCCCCCCcCCCCCcc--cHHHHhCCCCcEEEEehhh
Confidence 11 23456676 7888764 222111 11211 011256676543322111 1344456789999999766
Q ss_pred cC--CCChhHHhhhHHHHHHHHHHH
Q 005832 628 FP--GQGVIAVAFSGVMCAHRVAAD 650 (675)
Q Consensus 628 ~p--G~Gv~gA~~SG~~aA~~Il~~ 650 (675)
.+ .+.|+||+.||++||++|+..
T Consensus 401 ~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 401 SLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp CSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred hccCCeEehHHHHHHHHHHHHHHhh
Confidence 43 247999999999999999853
No 19
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=99.94 E-value=6.6e-27 Score=262.13 Aligned_cols=281 Identities=16% Similarity=0.118 Sum_probs=160.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCCCCCcceeEee-CCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
..+||||||||++||+||++|+++| ++|+|||+.+++||++.|... +|+.+|.|++++++... +.+.+++.++|
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~----~~~~~~~~~lg 82 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT----NPLFLEEAQLS 82 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTT----CHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCC----ChHHHHHHHhC
Confidence 3579999999999999999999999 999999999999999999887 89999999999876422 12334444555
Q ss_pred CceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 005832 234 CEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (675)
+... . ..+.+.++..+.+..+.... .......+..+.+...+....... ....
T Consensus 83 ~~~~----~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------- 135 (516)
T 1rsg_A 83 LNDG----R--TRFVFDDDNFIYIDEERGRV-------DHDKELLLEIVDNEMSKFAELEFH---QHLG----------- 135 (516)
T ss_dssp HHHC----C--CCEECCCCCCEEEETTTEEC-------TTCTTTCHHHHHHHHHHHHHHHC-------------------
T ss_pred CCCc----c--eeEEECCCCEEEEcCCCccc-------cccHHHHHHHHHHHHHHHHHHHhh---hccC-----------
Confidence 4210 0 01112222222222110000 000000111111111111100000 0000
Q ss_pred ChhhhhHHhhhccccHHHHHHHhC-------CCH---HHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCC
Q 005832 314 RPLECLTLAYYLPQNAGNIARKYI-------KDP---QLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVG 383 (675)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~-------~~~---~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~g 383 (675)
....++.+++.+++ .+. .+..++...... .+..+...++.+.. ..+.+...++.|
T Consensus 136 ----------~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~s~~~~~----~~~~~~~~~~~g 200 (516)
T 1rsg_A 136 ----------VSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELW-HGLDWKLLSAKDTY----FGHQGRNAFALN 200 (516)
T ss_dssp ------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHH-HTBCTTTSBHHHHC----CCCSSCCEEESC
T ss_pred ----------CCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHH-hCCChHHCChHHHH----hhccCcchhhhC
Confidence 00111222222111 000 111222211111 12334444443211 112233446677
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhh----------ccCCCC
Q 005832 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGK----------LLKGEQ 453 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~----------Ll~~~~ 453 (675)
++.++++|++.+. +++|++|++|++|..+++..+.|++.+|+++.||+||+|+++..+... +.-.+.
T Consensus 201 -~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~ 277 (516)
T 1rsg_A 201 -YDSVVQRIAQSFP--QNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPP 277 (516)
T ss_dssp -HHHHHHHHHTTSC--GGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESC
T ss_pred -HHHHHHHHHHhCC--CCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccceEecCC
Confidence 9999999887774 368999999999998643334688999988999999999998765321 111235
Q ss_pred CChHHHHHHHhhccCCcEEEEEEeeccccCCCC
Q 005832 454 LPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD 486 (675)
Q Consensus 454 lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~ 486 (675)
+|..+.+.+..+.+++ ..+|++.+++++|+.+
T Consensus 278 Lp~~~~~ai~~~~~~~-~~Kv~l~f~~~fW~~~ 309 (516)
T 1rsg_A 278 LKPVIQDAFDKIHFGA-LGKVIFEFEECCWSNE 309 (516)
T ss_dssp CCHHHHHHTTSSCCCC-CEEEEEEESSCCSCCS
T ss_pred CCHHHHHHHHhCCCCc-ceEEEEEeCCCCCCCC
Confidence 8988888877777654 6799999999998754
No 20
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=99.93 E-value=9.3e-24 Score=242.77 Aligned_cols=244 Identities=15% Similarity=0.135 Sum_probs=150.4
Q ss_pred CcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC------CCEEEcCEEEECCChhhHHhhcc
Q 005832 376 GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD------GREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 376 ~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~------G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
+..+.+.||++.|+++|++ +.+|++|++|++|..+++++. |++.+ |+++.||+||+|+++..+ +.+.
T Consensus 391 g~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~~~~v~-V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL-~~l~ 463 (662)
T 2z3y_A 391 GSHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYTASGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGVL-KQQP 463 (662)
T ss_dssp SCCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEETTEEE-EEEEESSCTTCEEEEEESEEEECCCHHHH-HCSS
T ss_pred CceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEECCCcEE-EEEeecccCCCCeEEEeCEEEECCCHHHH-hccc
Confidence 3456789999999998876 458999999999999988764 77655 567999999999997664 4421
Q ss_pred ----CCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCc
Q 005832 450 ----KGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGH 525 (675)
Q Consensus 450 ----~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~ 525 (675)
-.+.||..+.+++..+.+++ ..+|++.|++++|+.+......+.... ...+.+++.+++. +.
T Consensus 464 ~~i~f~P~LP~~k~~Ai~~l~~g~-~~KV~l~f~~~fW~~~~~~~G~l~~~~-----~~~~~~~~~~~~~--------~~ 529 (662)
T 2z3y_A 464 PAVQFVPPLPEWKTSAVQRMGFGN-LNKVVLCFDRVFWDPSVNLFGHVGSTT-----ASRGELFLFWNLY--------KA 529 (662)
T ss_dssp CSSEEESCCCHHHHHHHHHSEECC-CEEEEEECSSCCSCTTCSEEEECCSSS-----TTTTEEEEEECCS--------SS
T ss_pred CceEEcCCCCHHHHHHHHhCCccc-eeEEEEEcCcccccCCCCceeeecCCC-----CCCCceeEEEeCC--------CC
Confidence 12469988888888887765 679999999998875432222211110 1112233333221 22
Q ss_pred eEEEEEeccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc-CceEEEEecChhHHHHHhcCCCCcccCCCCCC
Q 005832 526 HILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRRYLARDQGTYGPMPRGT 603 (675)
Q Consensus 526 ~~l~~~~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~ 603 (675)
.++..++... ...|..+ .++++.+.+++.|+ ++++.-. .......+. .|.. .....|+|...+.+.
T Consensus 530 ~vL~~~~~G~~a~~~~~l-------sdee~~~~~l~~L~-~~~g~~~~~~p~~~~v~---~W~~-dp~~~Gsys~~~pg~ 597 (662)
T 2z3y_A 530 PILLALVAGEAAGIMENI-------SDDVIVGRCLAILK-GIFGSSAVPQPKETVVS---RWRA-DPWARGSYSYVAAGS 597 (662)
T ss_dssp SEEEEEECTHHHHHHTTS-------CHHHHHHHHHHHHH-HHHCTTSSCCCSEEEEC---CTTT-CTTTSSSCEECBTTC
T ss_pred CEEEEEeccHhHHHHHhC-------CHHHHHHHHHHHHH-HHhCCcccCCCceeEEE---EECC-CCCCCcccccCCCCC
Confidence 3555555432 2223332 35788889999998 7775421 122222221 1111 011256665432221
Q ss_pred CC---CCCCC--------CCCCCCCCcEEEeCCCccC--CCChhHHhhhHHHHHHHHHHHhC
Q 005832 604 PK---GLLGM--------PFNTTGINGLYCVGDSCFP--GQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 604 ~~---~~~~~--------p~~~t~i~gLylaG~~~~p--G~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
.. ..+.. |...++.++|||||++|.+ .+.|+||+.||++||++|++.++
T Consensus 598 ~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ts~~~~g~v~GAi~SG~raA~~i~~~~~ 659 (662)
T 2z3y_A 598 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 659 (662)
T ss_dssp CTHHHHHHHCCBCC---------CCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHhCcCccccccccccCCCCcEEEEeccccCCCCcCHHHHHHHHHHHHHHHHHHcc
Confidence 10 01111 2234667899999999864 35899999999999999998875
No 21
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=99.93 E-value=1.8e-23 Score=243.43 Aligned_cols=244 Identities=14% Similarity=0.119 Sum_probs=151.1
Q ss_pred CcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC------CCEEEcCEEEECCChhhHHhhcc
Q 005832 376 GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD------GREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 376 ~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~------G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
+.++.++||++.|+++|++. .+|++|++|++|..+++++. |++.+ |+++.||+||+|+++..+ +.++
T Consensus 562 g~~~~~~gG~~~L~~aLa~~-----l~I~Lnt~V~~I~~~~~gV~-V~~~~~~~~~~g~~i~AD~VIvTvPl~vL-k~l~ 634 (852)
T 2xag_A 562 GSHLTVRNGYSCVPVALAEG-----LDIKLNTAVRQVRYTASGCE-VIAVNTRSTSQTFIYKCDAVLCTLPLGVL-KQQP 634 (852)
T ss_dssp SCCEEETTCTTHHHHHHTTT-----CCEECSEEEEEEEEETTEEE-EEEEESSSTTCEEEEEESEEEECCCHHHH-HCSS
T ss_pred CceEEecCcHHHHHHHHHhC-----CCEEeCCeEEEEEEcCCcEE-EEEeecccCCCCeEEECCEEEECCCHHHH-Hhhh
Confidence 44567899999999988764 47999999999999988764 77654 567999999999998765 4421
Q ss_pred ----CCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCc
Q 005832 450 ----KGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGH 525 (675)
Q Consensus 450 ----~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~ 525 (675)
-.+.||..+.+.+..+.++. +.+|++.|++++|+.+.....++...... .... ++.+++. +.
T Consensus 635 ~~I~F~P~LP~~k~~AI~~l~~g~-v~KV~L~F~~~fW~~~~~~fG~l~~~~~~--~~~l---~~~~~~~--------~~ 700 (852)
T 2xag_A 635 PAVQFVPPLPEWKTSAVQRMGFGN-LNKVVLCFDRVFWDPSVNLFGHVGSTTAS--RGEL---FLFWNLY--------KA 700 (852)
T ss_dssp CSSEEESCCCHHHHHHHHHSEECC-CEEEEEECSSCCSCTTCCEEEECCSSSTT--TTTT---CEEEECS--------SS
T ss_pred cccccCCCCCHHHHHHHHcCCccc-eEEEEEEcCCcccCCCCCeeeeeccccCC--CCce---EEEecCC--------CC
Confidence 12468988887888887764 67999999999887543222222111000 0111 1112211 22
Q ss_pred eEEEEEeccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc-CceEEEEecChhHHHHHhcCCCCcccCCCCCC
Q 005832 526 HILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRRYLARDQGTYGPMPRGT 603 (675)
Q Consensus 526 ~~l~~~~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~ 603 (675)
.++..++... ...|..+ .++++.+.+++.|. ++++... .......+.. |.. .....|+|...+.+.
T Consensus 701 pvLl~~v~G~~a~~l~~l-------sdeel~~~~l~~L~-~ifG~~~~~~P~~~~vtr---W~~-dp~s~GsYs~~~pG~ 768 (852)
T 2xag_A 701 PILLALVAGEAAGIMENI-------SDDVIVGRCLAILK-GIFGSSAVPQPKETVVSR---WRA-DPWARGSYSYVAAGS 768 (852)
T ss_dssp SEEEEEECHHHHHHGGGS-------CHHHHHHHHHHHHH-HHHCTTTCCCCSEEEECC---TTT-CTTTSSSCEECBTTC
T ss_pred CEEEEEecCcCHHHHhcC-------CHHHHHHHHHHHHH-HHhCccccCCceEEEEEe---cCC-CCCcCccccccCCCc
Confidence 3555555432 2223322 35788899999998 7775421 1222222211 111 011256665432221
Q ss_pred CC---CCCCC--------CCCCCCCCcEEEeCCCccC--CCChhHHhhhHHHHHHHHHHHhC
Q 005832 604 PK---GLLGM--------PFNTTGINGLYCVGDSCFP--GQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 604 ~~---~~~~~--------p~~~t~i~gLylaG~~~~p--G~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
.. ..+.. |...++.++|||||++|.. .+.|+||+.||++||++|++.+.
T Consensus 769 ~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~ 830 (852)
T 2xag_A 769 SGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 830 (852)
T ss_dssp CTTHHHHTTSCBCCCCSSTTCCCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhCccccccccccccCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 10 01111 2335677899999999864 34899999999999999999875
No 22
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=99.92 E-value=3e-23 Score=226.46 Aligned_cols=411 Identities=13% Similarity=0.110 Sum_probs=226.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGC 234 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl 234 (675)
..+||+|||||++||+||++|+++| ++|+|+|+.+.+||++.|+..+|+.+|.|++++.. ....+.++++++|+
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-----~~~~~~~l~~~~g~ 79 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-----SYDTIQEIMDRTGD 79 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-----TCHHHHHHHHHHCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-----CcHHHHHHHHHhCC
Confidence 4689999999999999999999999 99999999999999999999999999999998753 23467889999998
Q ss_pred ceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcC
Q 005832 235 EMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKR 314 (675)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (675)
++.. ......+.+.+|.......+..... .+...+. ++...+.. ....... ...+..
T Consensus 80 ~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~~~~~---~l~~~~~~-~~~~~~~-----~~~~~~ 136 (424)
T 2b9w_A 80 KVDG--PKLRREFLHEDGEIYVPEKDPVRGP------------QVMAAVQ---KLGQLLAT-KYQGYDA-----NGHYNK 136 (424)
T ss_dssp CCCS--CCCCEEEECTTSCEECGGGCTTHHH------------HHHHHHH---HHHHHHHT-TTTTTTS-----SSSSSC
T ss_pred cccc--ccccceeEcCCCCEeccccCcccch------------hHHHHHH---HHHHHHhh-hhhhccc-----ccchhh
Confidence 7532 2223345556665432111111100 0000000 00000000 0000000 000000
Q ss_pred hhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHH-----HHhhcCcccccCCCHHHHH
Q 005832 315 PLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVL-----CDRHFGGINYPVGGVGGIA 389 (675)
Q Consensus 315 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~~g~~~p~gG~~~l~ 389 (675)
.......++.+++++...+.....++....... ..++.+.|+.+..... .....++.+.+.+|+++++
T Consensus 137 ------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 209 (424)
T 2b9w_A 137 ------VHEDLMLPFDEFLALNGCEAARDLWINPFTAFG-YGHFDNVPAAYVLKYLDFVTMMSFAKGDLWTWADGTQAMF 209 (424)
T ss_dssp ------CCGGGGSBHHHHHHHTTCGGGHHHHTTTTCCCC-CCCTTTSBHHHHHHHSCHHHHHHHHHTCCBCCTTCHHHHH
T ss_pred ------hhhhhccCHHHHHHhhCcHHHHHHHHHHHHhhc-cCChHhcCHHHHHHhhhHhhhhcccCCceEEeCChHHHHH
Confidence 011224677788877655443333333222211 1345666765532111 1112245667899999999
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCC
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAP 469 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~ 469 (675)
++|.+.+ +.+|+++++|++|..++++++ |++.+|+ +.||+||+|++++.++ .+++. .|.. ++....+.+.+
T Consensus 210 ~~l~~~l---~~~v~~~~~V~~i~~~~~~v~-v~~~~g~-~~ad~Vv~a~~~~~~~-~~l~~--~~~~-~~~~~~~~~~~ 280 (424)
T 2b9w_A 210 EHLNATL---EHPAERNVDITRITREDGKVH-IHTTDWD-RESDVLVLTVPLEKFL-DYSDA--DDDE-REYFSKIIHQQ 280 (424)
T ss_dssp HHHHHHS---SSCCBCSCCEEEEECCTTCEE-EEESSCE-EEESEEEECSCHHHHT-TSBCC--CHHH-HHHHTTCEEEE
T ss_pred HHHHHhh---cceEEcCCEEEEEEEECCEEE-EEECCCe-EEcCEEEECCCHHHHh-hccCC--CHHH-HHHHhcCCcce
Confidence 9998776 568999999999998887776 8888885 8999999999998764 45542 3332 23334444332
Q ss_pred cEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHH
Q 005832 470 SFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDA 549 (675)
Q Consensus 470 s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~ 549 (675)
+.+.+.+.... | .. ..++++++... .....++... .. + ++....+..+.......|...
T Consensus 281 --~~~~~~~~~~~-~-~~---~~~~~~~~~~~-~~g~~~~~~~--~~-~---~~~~~~l~~~~~~~~~~~~~~------- 339 (424)
T 2b9w_A 281 --YMVDACLVKEY-P-TI---SGYVPDNMRPE-RLGHVMVYYH--RW-A---DDPHQIITTYLLRNHPDYADK------- 339 (424)
T ss_dssp --EEEEEEEESSC-C-SS---EEECGGGGSGG-GTTSCCEEEE--CC-T---TCTTSCEEEEEECCBTTBCCC-------
T ss_pred --eEEEEEEeccC-C-cc---cccccCCCCCc-CCCcceEEee--ec-C---CCCceEEEEEeccCCCccccc-------
Confidence 23333343332 1 11 12333332210 0000122111 11 1 111233444443322233322
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCceEEEE-ecChh-HHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCc
Q 005832 550 KKELVADEIINRLENKLFPGLKQSIAFRE-IGSPK-THRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSC 627 (675)
Q Consensus 550 ~ke~~~~~il~~L~~~~~P~l~~~i~~~~-v~tP~-~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~ 627 (675)
.++++.+.+++.|+ ++.++..+.+.... ...|. ....|. .|.+. ++....+.+|||+||+++
T Consensus 340 ~~~~~~~~v~~~l~-~l~~~~~~~~~~~~w~~~p~~~~~~~~---~G~~~------------~~~~~~~~~~l~~aG~~~ 403 (424)
T 2b9w_A 340 TQEECRQMVLDDME-TFGHPVEKIIEEQTWYYFPHVSSEDYK---AGWYE------------KVEGMQGRRNTFYAGEIM 403 (424)
T ss_dssp CHHHHHHHHHHHHH-HTTCCEEEEEEEEEEEEEEECCHHHHH---TTHHH------------HHHHTTTGGGEEECSGGG
T ss_pred ChHHHHHHHHHHHH-HcCCcccccccccceeeeeccCHHHHh---ccHHH------------HHHHHhCCCCceEecccc
Confidence 24688899999998 66555433222111 11111 001111 11111 111124457999999987
Q ss_pred cCCCChhHHhhhHHHHHHHHH
Q 005832 628 FPGQGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 628 ~pG~Gv~gA~~SG~~aA~~Il 648 (675)
..| -+++|+.||..||++|+
T Consensus 404 ~~g-~~e~a~~Sg~~aA~~~l 423 (424)
T 2b9w_A 404 SFG-NFDEVCHYSKDLVTRFF 423 (424)
T ss_dssp SCS-SHHHHHHHHHHHHHHHT
T ss_pred ccc-cHHHHHHHHHHHHHHhc
Confidence 543 47899999999999875
No 23
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=99.92 E-value=4.4e-24 Score=236.69 Aligned_cols=414 Identities=16% Similarity=0.173 Sum_probs=235.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCCCCCcceeE-eeCCeEEccccccccCCCCCCchHHHHHHHHHc
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVIPGGSSGYY-ERDGYTFDVGSSVMFGFSDKGNLNLITQALAAV 232 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~~~gg~~~t~-~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (675)
...+||+|||||++||+||++|+++| .+|+|+|+.+.+||++.+. ..+|+.+|.|++.++. ....+.++++++
T Consensus 7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~-----~~~~~~~l~~~~ 81 (484)
T 4dsg_A 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS-----HYQYFDDVMDWA 81 (484)
T ss_dssp CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCC-----SBHHHHHHHHHH
T ss_pred ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCccccc-----ChHHHHHHHHHH
Confidence 34689999999999999999999998 7999999999999999985 6789999999999875 234567777776
Q ss_pred CCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005832 233 GCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 233 Gl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
+.++....... +.+.+|..+.++.... + ..++.. .... ... .+... ... .
T Consensus 82 ~~~~~~~~~~~---~~~~~g~~~~~P~~~~-----~-~~l~~~-~~~~-~~~---~ll~~----~~~-~----------- 131 (484)
T 4dsg_A 82 VQGWNVLQRES---WVWVRGRWVPYPFQNN-----I-HRLPEQ-DRKR-CLD---ELVRS----HAR-T----------- 131 (484)
T ss_dssp CSCEEEEECCC---EEEETTEEEESSGGGC-----G-GGSCHH-HHHH-HHH---HHHHH----HHC-C-----------
T ss_pred hhhhhhccCce---EEEECCEEEEeCccch-----h-hhCCHH-HHHH-HHH---HHHHH----Hhc-c-----------
Confidence 53322222111 1223565555541110 0 111111 0000 000 00000 000 0
Q ss_pred cChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHH-----------HHH-HHHHHh-------
Q 005832 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMI-----------NAS-MVLCDR------- 373 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-----------~~~-~~~~~~------- 373 (675)
......++.+++.+.+.......++..+..-..+.++.+.++. ... ......
T Consensus 132 ---------~~~~~~s~~e~~~~~~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~ 202 (484)
T 4dsg_A 132 ---------YTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWG 202 (484)
T ss_dssp ---------CSSCCSSHHHHHHHHHHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCS
T ss_pred ---------CCCCCCCHHHHHHHHhHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCC
Confidence 0011233444444333222222222221111112222222211 000 000000
Q ss_pred hcCccccc-CCCHHHHHHHHHHHHHHcCcEEEec--ceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005832 374 HFGGINYP-VGGVGGIAKSLAKGLADKGSEILYK--ANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 374 ~~~g~~~p-~gG~~~l~~~L~~~l~~~Gv~v~~~--~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
..+.+.|| .||++.++++|++.+.+. +|+++ ++|++|..++++ |++.+|+++.||+||+|++++.+. .++.
T Consensus 203 ~~~~f~yp~~gG~~~l~~~la~~l~~~--~i~~~~~~~V~~I~~~~~~---v~~~~G~~~~ad~VI~a~p~~~~~-~ll~ 276 (484)
T 4dsg_A 203 PNATFRFPQRGGTGIIYQAIKEKLPSE--KLTFNSGFQAIAIDADAKT---ITFSNGEVVSYDYLISTVPFDNLL-RMTK 276 (484)
T ss_dssp TTSEEEEESSSCTHHHHHHHHHHSCGG--GEEECGGGCEEEEETTTTE---EEETTSCEEECSEEEECSCHHHHH-HHEE
T ss_pred ccceEEeecCCCHHHHHHHHHhhhhhC--eEEECCCceeEEEEecCCE---EEECCCCEEECCEEEECCCHHHHH-HHhh
Confidence 11223455 489999999999988543 79999 569999988775 456889899999999999988765 5554
Q ss_pred C--CCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEE
Q 005832 451 G--EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHIL 528 (675)
Q Consensus 451 ~--~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l 528 (675)
+ ..+|+...+.+..+.+. +..+|+++++.+...+-...+++++++. + .++ ..+++++.++|..+|+|++++
T Consensus 277 ~~~~~~~~~~~~~l~~l~y~-s~~~v~l~~~~~~~~~~~~~~~i~vp~~-~---~~~--~ri~~~s~~~p~~ap~g~~~l 349 (484)
T 4dsg_A 277 GTGFKGYDEWPAIADKMVYS-STNVIGIGVKGTPPPHLKTACWLYFPED-T---SPF--YRATVFSNYSKYNVPEGHWSL 349 (484)
T ss_dssp CSSCTTGGGHHHHHHHCCEE-EEEEEEEEEESCCCGGGTTCCEEECCST-T---CSC--SEEECGGGTCGGGSCTTEEEE
T ss_pred ccCCCCCHHHHHHHhCCCcC-ceEEEEEEEcCCCcccCCCCeEEEEEcC-C---CeE--EEEEeecCCCcccCCCCeEEE
Confidence 3 23666666666676664 5789999998864211123456665532 1 233 235667888899999999888
Q ss_pred EEEecccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCc--CceEEEEecChhHHHHHhcCCCCcccCCCCCCCCC
Q 005832 529 HIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLK--QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKG 606 (675)
Q Consensus 529 ~~~~~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~--~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~ 606 (675)
++.+... ..|. . .+|++++.+++.|. ++ ..+. +.+...++. + +..+|-....+.. .
T Consensus 350 ~~e~~~~-~~~~-~-------~d~~l~~~a~~~L~-~~-~~~~~~~~~~~~~v~------r----~~~~yP~y~~~~~-~ 407 (484)
T 4dsg_A 350 MLEVSES-KYKP-V-------NHSTLIEDCIVGCL-AS-NLLLPEDLLVSKWHY------R----IEKGYPTPFIGRN-N 407 (484)
T ss_dssp EEEEEEB-TTBC-C-------CTTSHHHHHHHHHH-HT-TSCCTTCCEEEEEEE------E----EEEEEECCBTTHH-H
T ss_pred EEEEecC-cCCc-C-------CHHHHHHHHHHHHH-Hc-CCCCccceEEEEEEE------E----eCccccCCCccHH-H
Confidence 7766433 2331 2 24688999999998 65 3343 233322221 0 0111211100000 0
Q ss_pred CCC-CCCCCCCCCcEEEeCCCc-cC-C-CChhHHhhhHHHHHHHHH
Q 005832 607 LLG-MPFNTTGINGLYCVGDSC-FP-G-QGVIAVAFSGVMCAHRVA 648 (675)
Q Consensus 607 ~~~-~p~~~t~i~gLylaG~~~-~p-G-~Gv~gA~~SG~~aA~~Il 648 (675)
.+. ........ |||++|.+. |. | .+|+.|+.+|..||+.|+
T Consensus 408 ~~~~~~~~l~~~-~l~~~Gr~g~~~y~v~~~d~~i~sg~~aa~~i~ 452 (484)
T 4dsg_A 408 LLEKAQPELMSR-CIYSRGRFGAWRYEVGNQDHSFMQGVEAIDHVL 452 (484)
T ss_dssp HHHHHHHHHHHT-TEEECSTTTTCCGGGCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CcEeecCCcccccCCCChHHHHHHHHHHHHHHH
Confidence 000 00001123 999999853 22 3 489999999999999997
No 24
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=99.90 E-value=1.2e-22 Score=235.12 Aligned_cols=425 Identities=16% Similarity=0.127 Sum_probs=227.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee-CCeEEccccccccCCCCCCchHHHHHHHHHcC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER-DGYTFDVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~-~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
...+||+|||||++||+||+.|++.|++|+|+|+.+.+||++.|... .|+.+|.|++++++.. .+.+..+++++|
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~----~np~~~l~~~lG 409 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCI----NNPVALMCEQLG 409 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCT----TCHHHHHHHHHT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCc----cChHHHHHHHhC
Confidence 34689999999999999999999999999999999999999998764 5899999999998743 234567888899
Q ss_pred CceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhc
Q 005832 234 CEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFK 313 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (675)
++........ .+...++... . ........ ..+..+.... ............... .
T Consensus 410 l~~~~~~~~~--~l~~~~g~~~----~-~~~~~~~~-------~~~~~ll~~~----~~~~~~~~~~~d~sl---~---- 464 (776)
T 4gut_A 410 ISMHKFGERC--DLIQEGGRIT----D-PTIDKRMD-------FHFNALLDVV----SEWRKDKTQLQDVPL---G---- 464 (776)
T ss_dssp CCCEECCSCC--CEECTTSCBC----C-HHHHHHHH-------HHHHHHHHHH----HHHGGGCCGGGCCBH---H----
T ss_pred Cccccccccc--ceEccCCccc----c-hhHHHHHH-------HHHHHHHHHH----HHHhhcccccccccH---H----
Confidence 8754332221 1222333211 0 11111000 0011111111 000000000000000 0
Q ss_pred ChhhhhHHhhhccccHHHHHHHhCCC-----H-HHHHHHhhhhhhhccCCCCCchHHHHHH-HHHHhhcCcccccCCCHH
Q 005832 314 RPLECLTLAYYLPQNAGNIARKYIKD-----P-QLLSFIDAECFIVSTINALQTPMINASM-VLCDRHFGGINYPVGGVG 386 (675)
Q Consensus 314 ~~~~~~~~~~~~~~s~~~~~~~~~~~-----~-~l~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~p~gG~~ 386 (675)
.........++++.... . .+...+.. ..+..+......+...... .......+....+.+|++
T Consensus 465 ---------~~~~~~~~~~l~~~gv~~~~l~~~~l~~~~~~-l~~~~G~~l~~ls~~~~~~~~~~~~~~G~~~~~~~G~~ 534 (776)
T 4gut_A 465 ---------EKIEEIYKAFIKESGIQFSELEGQVLQFHLSN-LEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYS 534 (776)
T ss_dssp ---------HHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHH-HHHHHTSCTTSBBTTTTTGGGGSCCCCSCEEECTTCTH
T ss_pred ---------HHHHHHHHHHHHhcCCCccchhHHHHHHHHHH-HHHhcCCChHHcChhhhhhhhhHHhcCCCeEEECChHH
Confidence 00000001111111000 0 00000000 0011111222222111000 000012234456788999
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc-CCCCCChHHHHHHHhh
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL-KGEQLPKEEENFQKLY 465 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll-~~~~lp~~~~~~~~~~ 465 (675)
.+.++|++ |++|+++++|++|..++++++ |++.+|+++.||+||+|+++..+....+ -.+.+|..+...+..+
T Consensus 535 ~l~~aLa~-----gl~I~l~t~V~~I~~~~~~v~-V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~~~ai~~l 608 (776)
T 4gut_A 535 VIIEKLAE-----GLDIQLKSPVQCIDYSGDEVQ-VTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSL 608 (776)
T ss_dssp HHHHHHHT-----TSCEESSCCEEEEECSSSSEE-EEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHHHHHHHHE
T ss_pred HHHHHHHh-----CCcEEcCCeeEEEEEcCCEEE-EEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHhC
Confidence 99888764 679999999999998887765 8889998999999999998766432121 2346888877777777
Q ss_pred ccCCcEEEEEEeeccccCCCCCCcccee--eccchhhhccCCCceEEecCCCCCCCCCCCC-ceEEEEEeccc-chhhcc
Q 005832 466 VKAPSFLSIHMGVKAEVLPPDTDCHHFV--LEDDWNRLEEPYGSIFLSIPTVLDSSLAPEG-HHILHIFTICS-IEDWEG 541 (675)
Q Consensus 466 ~~~~s~~~v~l~l~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G-~~~l~~~~~~~-~~~w~~ 541 (675)
.++. +.+|++.+++++|..+.....++ +.... ...+.+.+... ..|+| ..++..++... ...|..
T Consensus 609 ~~g~-~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~----~~~~~~~~~~d------~~p~g~~~vL~~~i~G~~a~~l~~ 677 (776)
T 4gut_A 609 GAGI-IEKIALQFPYRFWDSKVQGADFFGHVPPSA----SKRGLFAVFYD------MDPQKKHSVLMSVIAGEAVASVRT 677 (776)
T ss_dssp EEEC-CEEEEEECSSCTTHHHHTTCSEEEECCSSG----GGTTEEEEEEE------SCTTSCSCEEEEEECTHHHHHHHT
T ss_pred CCee-EEEEEEecCcccccccCCCCceEEeecCCc----CCCceEEEEec------CCCCCCceEEEEEecchhHHHHHc
Confidence 6553 67999999998875421111111 11100 01111111111 12334 34555555432 223333
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhCCCCc-CceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCC-CCc
Q 005832 542 LAQKDYDAKKELVADEIINRLENKLFPGLK-QSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTG-ING 619 (675)
Q Consensus 542 ~~~~~~~~~ke~~~~~il~~L~~~~~P~l~-~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~-i~g 619 (675)
+ .++++.+.+++.|. ++++... ...+...+. .|.. .....|+|...+.+..... .+....+ .++
T Consensus 678 l-------sdeel~~~~l~~L~-~ifg~~~~~~P~~~~vt---~W~~-dp~s~Gsys~~~~g~~~~~--~~~L~~p~~gr 743 (776)
T 4gut_A 678 L-------DDKQVLQQCMATLR-ELFKEQEVPDPTKYFVT---RWST-DPWIQMAYSFVKTGGSGEA--YDIIAEDIQGT 743 (776)
T ss_dssp S-------CHHHHHHHHHHHHH-HHTTTSCCCCCSEEEEC---CGGG-CTTTCCSEEEEBTTCCTHH--HHHHHCCBTTT
T ss_pred C-------CHHHHHHHHHHHHH-HHhCcccccCcceEEEe---cCCC-CCccCCCCCccCCCCchhH--HHHHhCcCCCc
Confidence 3 35789999999998 8886422 112222221 1211 1112566654322111000 0011123 478
Q ss_pred EEEeCCCccCC--CChhHHhhhHHHHHHHHHH
Q 005832 620 LYCVGDSCFPG--QGVIAVAFSGVMCAHRVAA 649 (675)
Q Consensus 620 LylaG~~~~pG--~Gv~gA~~SG~~aA~~Il~ 649 (675)
|||||++|.+. +.|+||+.||.+||++|++
T Consensus 744 L~FAGE~Ts~~~~gtveGAi~SG~RaA~~Ila 775 (776)
T 4gut_A 744 VFFAGEATNRHFPQTVTGAYLSGVREASKIAA 775 (776)
T ss_dssp EEECSGGGCSSSCSSHHHHHHHHHHHHHHHHC
T ss_pred EEEEehhhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 99999999742 4799999999999999974
No 25
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=99.89 E-value=1.6e-22 Score=229.35 Aligned_cols=276 Identities=11% Similarity=-0.015 Sum_probs=160.9
Q ss_pred CcccccCCCHHHHHHHHHHHHHHcCcEEEecceee--EEEEeCCe------EEEE-EeCCCC--EEEcCEEEECCChhhH
Q 005832 376 GGINYPVGGVGGIAKSLAKGLADKGSEILYKANVT--KVILEQGK------AVGV-RLSDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 376 ~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~--~I~~~~~~------v~gV-~~~~G~--~i~ad~VI~A~g~~~~ 444 (675)
..++.+.||++.|+++|++.+.+ |+.|+++++|+ +|..++++ .+.| ...+|+ ++.||.||+|+++..+
T Consensus 337 ~~~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L 415 (721)
T 3ayj_A 337 NEYTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQL 415 (721)
T ss_dssp CEECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHH
T ss_pred cceeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCCHHHH
Confidence 45778999999999999998754 66789999999 99886433 2336 456777 7899999999997665
Q ss_pred Hh-----hcc----------------------CCCCC-C-------hHHHHHHHhhccCCcEEEEEEee-----ccccCC
Q 005832 445 FG-----KLL----------------------KGEQL-P-------KEEENFQKLYVKAPSFLSIHMGV-----KAEVLP 484 (675)
Q Consensus 445 ~~-----~Ll----------------------~~~~l-p-------~~~~~~~~~~~~~~s~~~v~l~l-----~~~~~p 484 (675)
.. .+- .++.+ | ..++.++..+.+.. ..+|++.+ ++++|.
T Consensus 416 ~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~-s~Kv~l~~~~~~~~~~fW~ 494 (721)
T 3ayj_A 416 TPIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMAR-SSKVFATVKTAALDQPWVP 494 (721)
T ss_dssp HHHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEEC-EEEEEEEEEGGGGGSTTSC
T ss_pred hhccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCccc-ceEEEEEEccccCCCCccc
Confidence 21 111 12225 7 67777777776665 56999999 888765
Q ss_pred CCCCc-cceeeccchhhhccCCCceEE-ecCCCCCCCCCCCCceEEEE-Eeccc-chhh------ccCChhhHHHHHHHH
Q 005832 485 PDTDC-HHFVLEDDWNRLEEPYGSIFL-SIPTVLDSSLAPEGHHILHI-FTICS-IEDW------EGLAQKDYDAKKELV 554 (675)
Q Consensus 485 ~~~~~-~~~~~~~~~~~~~~~~~~i~~-~~~s~~d~~~ap~G~~~l~~-~~~~~-~~~w------~~~~~~~~~~~ke~~ 554 (675)
.+... ....+.+ .+...+|. ..|+..| ..+++..++.+ |+... ...| ..+++++-....+.+
T Consensus 495 ~~~g~~i~~s~TD------~~~r~~~~~p~p~~~d--~~~~~~gvlL~sYtwg~dA~~~~~~~g~~~~~~~er~~~~~~~ 566 (721)
T 3ayj_A 495 QWRGEPIKAVVSD------SGLAASYVVPSPIVED--GQAPEYSSLLASYTWEDDSTRLRHDFGLYPQNPATETGTADGM 566 (721)
T ss_dssp EETTEECCEEEET------TTTEEEEEEECSCC------CCSEEEEEEEEEETHHHHHHHTTCCSSSEESSSSSCCCHHH
T ss_pred ccCCCCceeeecC------CCcceEEEeccCcccc--cCCCCCcEEEEEEeCccchhhhhccccccCCChHHhhhhhhHH
Confidence 54110 0112222 22222332 2233212 22445554433 33321 2233 111111100112345
Q ss_pred HHHHHHHHHH-hhCCCCc-----------------CceEEEEecChhHHHHHhcCCCCcccCC-CCCCC-----CCCCCC
Q 005832 555 ADEIINRLEN-KLFPGLK-----------------QSIAFREIGSPKTHRRYLARDQGTYGPM-PRGTP-----KGLLGM 610 (675)
Q Consensus 555 ~~~il~~L~~-~~~P~l~-----------------~~i~~~~v~tP~~~~~~~~~~~G~yg~~-p~~~~-----~~~~~~ 610 (675)
.+.++++|++ +++|+.. +...+.|...| + .|+|... |.... ..+...
T Consensus 567 ~~~~l~~la~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~dW~~dp-s--------~Gaf~~~~pgq~~~~~l~~~~~~~ 637 (721)
T 3ayj_A 567 YRTMVNRAYRYVKYAGASNAQPWWFYQLLAEARTADRFVFDWTTNK-T--------AGGFKLDMTGDHHQSNLCFRYHTH 637 (721)
T ss_dssp HHHHHHHTCCEECCTTCSSCEECHHHHHHHTSCSTTCEEEEGGGST-T--------SSSEECCBTTTHHHHHHHHHGGGG
T ss_pred HHHHHHHHhhhccCccccccccchhhhhhhhcccCceEEEeCCCCC-C--------CCccccCCCccchhhhhhhhhhhh
Confidence 7888888861 3567654 22333333333 2 5555432 32200 000000
Q ss_pred CCCCCCCCcEEEeCCCc-cCCCChhHHhhhHHHHHHHHHHHhCCcccCcchhHHHHHHHHH
Q 005832 611 PFNTTGINGLYCVGDSC-FPGQGVIAVAFSGVMCAHRVAADIGLEKKSPVLDAGLLRLLAW 670 (675)
Q Consensus 611 p~~~t~i~gLylaG~~~-~pG~Gv~gA~~SG~~aA~~Il~~~g~~~~~~~~~~~~~~~~~~ 670 (675)
.....+-.++||||+++ +.++.++||+.||.+||..|.+.++....+.++|....--.+|
T Consensus 638 ~~~~~~~gri~fAGe~~S~~~GWieGAl~Sa~~Aa~~i~~~~~~~~~~~~~~~~~~~~~~~ 698 (721)
T 3ayj_A 638 ALAASLDNRFFIASDSYSHLGGWLEGAFMSALNAVAGLIVRANRGDVSALSTEARPLVIGL 698 (721)
T ss_dssp GGCTTTCCCEEECSGGGSSCTTSHHHHHHHHHHHHHHHHHHHTTTCGGGBCTTTTHHHHTS
T ss_pred ccccCCCCCEEEeehhhccCCceehHHHHHHHHHHHHHHHHhcCCCCcccCccchhccccc
Confidence 01123558999999987 4455799999999999999999999888887877555444444
No 26
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=99.89 E-value=8.1e-22 Score=208.85 Aligned_cols=234 Identities=16% Similarity=0.120 Sum_probs=146.4
Q ss_pred ccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC--CCCC
Q 005832 378 INYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG--EQLP 455 (675)
Q Consensus 378 ~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~--~~lp 455 (675)
.+...+|+..+.+.|.+.+ |++|+++++|++|..+++++. |++.+|+++.+|.||+|+++..+ ..|+.+ +.+|
T Consensus 104 ~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~~~~~~-v~~~~g~~~~ad~vV~A~p~~~~-~~ll~~~~~~l~ 178 (342)
T 3qj4_A 104 NFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLRDDKWE-VSKQTGSPEQFDLIVLTMPVPEI-LQLQGDITTLIS 178 (342)
T ss_dssp EEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEECSSSEE-EEESSSCCEEESEEEECSCHHHH-TTCBSTHHHHSC
T ss_pred ceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEcCCEEE-EEECCCCEEEcCEEEECCCHHHH-HHHhcccccccC
Confidence 4566788999999988876 899999999999999887765 88888988899999999998776 467653 2366
Q ss_pred hHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCC-CCCceEEEEEecc
Q 005832 456 KEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLA-PEGHHILHIFTIC 534 (675)
Q Consensus 456 ~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~a-p~G~~~l~~~~~~ 534 (675)
+.....+..+.+.+ ..+|++.++++++.+ .....++++++ .+.. ++...+.. +.+. +++...+.++...
T Consensus 179 ~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~-~~~~g~~~~~~-----~~~~--~~~~~~~k-~~r~~~~~~~~~v~~~~~ 248 (342)
T 3qj4_A 179 ECQRQQLEAVSYSS-RYALGLFYEAGTKID-VPWAGQYITSN-----PCIR--FVSIDNKK-RNIESSEIGPSLVIHTTV 248 (342)
T ss_dssp HHHHHHHHTCCBCC-EEEEEEECSSCC--C-CSCSEEECSSC-----SSEE--EEEEHHHH-TTCCCC-CCCEEEEEECH
T ss_pred HHHHHHHhcCCccc-cEEEEEEECCCCccC-CceeeEEccCC-----cceE--EEEccccC-CCCCCCCCCceEEEECCH
Confidence 66667777777764 789999999764322 22223333321 1121 12222222 2222 2333344444432
Q ss_pred cchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCceEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCC
Q 005832 535 SIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNT 614 (675)
Q Consensus 535 ~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~ 614 (675)
.|. ++..+..+|++.+.++++|+ ++++..... ++..+. +|. .+. |.. ....+|...
T Consensus 249 ---~~~---~~~~~~~~~~~~~~~~~~l~-~~~g~~~~p-~~~~v~------rW~---~a~----p~~---~~~~~~~~~ 304 (342)
T 3qj4_A 249 ---PFG---VTYLEHSIEDVQELVFQQLE-NILPGLPQP-IATKCQ------KWR---HSQ----VTN---AAANCPGQM 304 (342)
T ss_dssp ---HHH---HHTTTSCHHHHHHHHHHHHH-HHSCSCCCC-SEEEEE------EET---TCS----BSS---CCSSSCSCE
T ss_pred ---HHH---HHhhcCCHHHHHHHHHHHHH-HhccCCCCC-ceeeec------ccc---ccc----ccc---ccCCCccee
Confidence 232 11223446899999999999 888744332 222210 111 111 110 000122222
Q ss_pred --CCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 005832 615 --TGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 615 --t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
...+||++||||+. |.||++|+.||+.||++|++.+
T Consensus 305 ~~~~~~~l~laGd~~~-g~~v~~ai~sg~~aa~~i~~~l 342 (342)
T 3qj4_A 305 TLHHKPFLACGGDGFT-QSNFDGCITSALCVLEALKNYI 342 (342)
T ss_dssp EEETTTEEEECSGGGS-CSSHHHHHHHHHHHHHHHTTC-
T ss_pred EecCCccEEEEccccC-CCCccHHHHHHHHHHHHHHhhC
Confidence 36689999999964 6799999999999999997643
No 27
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=99.87 E-value=7e-21 Score=207.63 Aligned_cols=332 Identities=14% Similarity=0.215 Sum_probs=200.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeC--------------------CeEEccccccc
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERD--------------------GYTFDVGSSVM 213 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~--------------------g~~~d~G~~~~ 213 (675)
++..+||+|||+|++|+++|+.|+++|++|+|+||++.+||.+.++... +|.+|.+++++
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l 96 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI 96 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence 4557999999999999999999999999999999999999999887532 46888888877
Q ss_pred cCCCCCCchHHHHHHHHHcCCc--eeEeeCCCeEEEEc-------CCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHH
Q 005832 214 FGFSDKGNLNLITQALAAVGCE--MEVIPDPTTVHFHL-------PNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYG 284 (675)
Q Consensus 214 ~g~~~~~~~~~~~~ll~~lGl~--~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~ 284 (675)
.. ...+.++|.+.|+. +++......+.+.. +++....++.+..+.... ......++..+.+|+.
T Consensus 97 ~~------~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~-~lLs~~eK~~l~kFL~ 169 (475)
T 3p1w_A 97 LV------GGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVS-PLLSLMEKNRCKNFYQ 169 (475)
T ss_dssp ET------TSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTC-TTSCHHHHHHHHHHHH
T ss_pred ec------CcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhc-cCCCHHHHHHHHHHHH
Confidence 63 23567778888874 33444333333321 245566666664443321 1112234445555543
Q ss_pred HHHHHHHHhhhhhhhccchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHH
Q 005832 285 ECWKIFNALNSLELKSLEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMI 364 (675)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~ 364 (675)
.+.... .. .+. .....+....++.++++++..++.++.++.....+....+....++.
T Consensus 170 ~l~~~~-------~~---~~~------------~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~ 227 (475)
T 3p1w_A 170 YVSEWD-------AN---KRN------------TWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAY 227 (475)
T ss_dssp HHHHCC-------TT---CGG------------GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHH
T ss_pred HHHhhh-------hc---cch------------hhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHH
Confidence 321100 00 000 00001123467888999988888888876332211111122233443
Q ss_pred HHH---HHHH---Hhh-cCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEE-eCCeEEEEEeCCCCEEEcCEEE
Q 005832 365 NAS---MVLC---DRH-FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVIL-EQGKAVGVRLSDGREFYAKTII 436 (675)
Q Consensus 365 ~~~---~~~~---~~~-~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~-~~~~v~gV~~~~G~~i~ad~VI 436 (675)
... ..+. ..+ ...+.||+||++.|+++|.+.++++|++|+++++|++|.. +++++++|++.+|+++.||.||
T Consensus 228 ~~l~ri~~y~~Sl~~yg~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI 307 (475)
T 3p1w_A 228 LTLERIKLYMQSISAFGKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVI 307 (475)
T ss_dssp HHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEE
Confidence 222 1111 111 2357899999999999999999999999999999999999 7788999999999999999999
Q ss_pred ECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCC-CCccceeeccchhhhccCCCceEEecCCC
Q 005832 437 SNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD-TDCHHFVLEDDWNRLEEPYGSIFLSIPTV 515 (675)
Q Consensus 437 ~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 515 (675)
+|++.+. ++|... +....+......++.+..... .....++++..- +. .-..+|+.+.+
T Consensus 308 ~a~~~~~---------~~p~~~-------~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~--~~-~~~~iy~~~~s- 367 (475)
T 3p1w_A 308 CDPSYVM---------HLKNKI-------KKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQ--LN-RKSDIYINLVS- 367 (475)
T ss_dssp ECGGGCT---------TSTTSE-------EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGG--GT-SSSCEEEEEEE-
T ss_pred ECCCccc---------cCcccc-------cccceEEEEEEEEeccCcccCCCceEEEEeCCcc--cC-CCCCEEEEEEC-
Confidence 9987541 112110 000112333444565542211 112234555421 11 11236665433
Q ss_pred CCCCCCCCCceEEEEEecc
Q 005832 516 LDSSLAPEGHHILHIFTIC 534 (675)
Q Consensus 516 ~d~~~ap~G~~~l~~~~~~ 534 (675)
.+...+|.|+.++++.+..
T Consensus 368 ~~~~~cp~G~~i~~~st~~ 386 (475)
T 3p1w_A 368 FQHGVTLKGKYIAIVSATV 386 (475)
T ss_dssp GGGTSSCTTCEEEEEEEEC
T ss_pred CCcCcCCCCcEEEEEEeec
Confidence 2345689999988887765
No 28
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=99.85 E-value=6.2e-19 Score=185.75 Aligned_cols=325 Identities=16% Similarity=0.152 Sum_probs=186.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEccccccccCCCCCCchHHHHHHHHHcCCce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
.+||+|||||++|+++|+.|+++|++|+||||...+||+..+....+..+|.+...+.... ..+.++++.+...-
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 76 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARD-----RRFATAVKQWQAQG 76 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCS-----HHHHHHHHHHHHHT
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCcccceeEecCCCeEecCCCeEecCC-----HHHHHHHHHHHhCC
Confidence 4799999999999999999999999999999999999999988888888888876664211 11112221110000
Q ss_pred eEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh
Q 005832 237 EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (675)
... .+... ....
T Consensus 77 ~~~--------~~~~~-~~~~----------------------------------------------------------- 88 (336)
T 1yvv_A 77 HVA--------EWTPL-LYNF----------------------------------------------------------- 88 (336)
T ss_dssp SEE--------EECCC-EEEE-----------------------------------------------------------
T ss_pred Cee--------ecccc-ceec-----------------------------------------------------------
Confidence 000 00000 0000
Q ss_pred hhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHH
Q 005832 317 ECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLCDRHFGGINYPVGGVGGIAKSLAKGL 396 (675)
Q Consensus 317 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~p~gG~~~l~~~L~~~l 396 (675)
.+. ...... .....+....|+..+.+.+.+
T Consensus 89 ---------------------~~~--------------~~~~~~-------------~~~~~~~~~~~~~~l~~~l~~-- 118 (336)
T 1yvv_A 89 ---------------------HAG--------------RLSPSP-------------DEQVRWVGKPGMSAITRAMRG-- 118 (336)
T ss_dssp ---------------------SSS--------------BCCCCC-------------TTSCEEEESSCTHHHHHHHHT--
T ss_pred ---------------------cCc--------------ccccCC-------------CCCccEEcCccHHHHHHHHHc--
Confidence 000 000000 000122334566777666654
Q ss_pred HHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEE-cCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEE
Q 005832 397 ADKGSEILYKANVTKVILEQGKAVGVRLSDGREFY-AKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIH 475 (675)
Q Consensus 397 ~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~-ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~ 475 (675)
|++|+++++|++|..+++++. |++.+|+.+. +|.||+|+|+..+. .++.. .| .....+..+.+. +..+++
T Consensus 119 ---g~~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~a~~vV~a~g~~~~~-~~~~~--~~-~l~~~~~~~~~~-~~~~~~ 189 (336)
T 1yvv_A 119 ---DMPVSFSCRITEVFRGEEHWN-LLDAEGQNHGPFSHVIIATPAPQAS-TLLAA--AP-KLASVVAGVKMD-PTWAVA 189 (336)
T ss_dssp ---TCCEECSCCEEEEEECSSCEE-EEETTSCEEEEESEEEECSCHHHHG-GGGTT--CH-HHHHHHTTCCEE-EEEEEE
T ss_pred ---cCcEEecCEEEEEEEeCCEEE-EEeCCCcCccccCEEEEcCCHHHHH-Hhhcc--CH-HHHHHHhhcCcc-ceeEEE
Confidence 789999999999998877765 8888998664 89999999988765 44432 22 233344455555 577888
Q ss_pred EeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChhhHHHHHHHHH
Q 005832 476 MGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQKDYDAKKELVA 555 (675)
Q Consensus 476 l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~~~~~~ke~~~ 555 (675)
+.++.+.+.+. ..+++.+ .+...++. .+ ..|...+.+...++.........+. +..++++.
T Consensus 190 ~~~~~~~~~~~---~~~~~~~------~~~~~l~~--~~-~~p~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~ 250 (336)
T 1yvv_A 190 LAFETPLQTPM---QGCFVQD------SPLDWLAR--NR-SKPERDDTLDTWILHATSQWSRQNL-------DASREQVI 250 (336)
T ss_dssp EEESSCCSCCC---CEEEECS------SSEEEEEE--GG-GSTTCCCSSEEEEEEECHHHHHHTT-------TSCHHHHH
T ss_pred EEecCCCCCCC---CeEEeCC------CceeEEEe--cC-cCCCCCCCCcEEEEEeCHHHHHHHH-------hCCHHHHH
Confidence 99987754321 2222221 23322221 11 1133333222222222211111222 22357788
Q ss_pred HHHHHHHHHhhCCC-CcCc---eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccCCC
Q 005832 556 DEIINRLENKLFPG-LKQS---IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFPGQ 631 (675)
Q Consensus 556 ~~il~~L~~~~~P~-l~~~---i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~pG~ 631 (675)
+++++.+. ++++. +... .+.+|.. .+..... ..+......++|+||||+++ |.
T Consensus 251 ~~l~~~l~-~~lg~~~~~p~~~~~~rw~~--------------a~~~~~~-------~~~~~~~~~~rl~laGDa~~-g~ 307 (336)
T 1yvv_A 251 EHLHGAFA-ELIDCTMPAPVFSLAHRWLY--------------ARPAGAH-------EWGALSDADLGIYVCGDWCL-SG 307 (336)
T ss_dssp HHHHHHHH-TTCSSCCCCCSEEEEEEEEE--------------EEESSCC-------CCSCEEETTTTEEECCGGGT-TS
T ss_pred HHHHHHHH-HHhCCCCCCCcEEEccccCc--------------cCCCCCC-------CCCeeecCCCCEEEEecCCC-CC
Confidence 88888898 66642 2111 1111110 0000000 00111134589999999986 46
Q ss_pred ChhHHhhhHHHHHHHHHHHhCCcc
Q 005832 632 GVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 632 Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
||++|+.+|..+|+.|.+.+..+.
T Consensus 308 gv~~a~~sg~~lA~~l~~~~~~~~ 331 (336)
T 1yvv_A 308 RVEGAWLSGQEAARRLLEHLQLEH 331 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999987654
No 29
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=99.83 E-value=1.9e-18 Score=193.59 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=159.0
Q ss_pred HHHHHHHHHcCCc--eeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhc
Q 005832 223 NLITQALAAVGCE--MEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKS 300 (675)
Q Consensus 223 ~~~~~ll~~lGl~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (675)
..+.++|.++|+. +++.... ..+.+.+|....++.+...+... ......++..+.+|+..+.. + .
T Consensus 237 g~lv~LL~~sgV~~yLEFk~v~--~~y~~~~G~~~~VPas~~eif~s-~~Lsl~EKr~L~kFl~~~~~-~------~--- 303 (650)
T 1vg0_A 237 GLLIDLLIKSNVSRYAEFKNIT--RILAFREGTVEQVPCSRADVFNS-KQLTMVEKRMLMKFLTFCVE-Y------E--- 303 (650)
T ss_dssp SHHHHHHHHHTGGGGCCEEECC--EEEEESSSSEEECCCSHHHHHHC-SSSCHHHHHHHHHHHHHHHT-G------G---
T ss_pred cHHHHHHHHcCCcceeeEEEcc--ceEEecCCCEeECCCCHHHHHhC-cCCCHHHHHHHHHHHHHHHH-h------c---
Confidence 3466777777753 2222222 23444677766777776655443 22233455555555543321 0 0
Q ss_pred cchhhHHHhhhhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH---HHHHH--h-h
Q 005832 301 LEEPIYLFGQFFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS---MVLCD--R-H 374 (675)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~--~-~ 374 (675)
..+ .....+...++.+++++++.++.++.++.....+. .....|+..+. ..+.. . +
T Consensus 304 ------------~~p---~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~lal~---~~~~~pa~~~l~~i~~~l~sl~~y 365 (650)
T 1vg0_A 304 ------------EHP---DEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMT---SETTSCTVDGLKATKKFLQCLGRY 365 (650)
T ss_dssp ------------GCH---HHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHTTC-----CCSCBHHHHHHHHHHHHHHTTSS
T ss_pred ------------cCh---HHHhhhccCCHHHHHHHhCCCHHHHHHHHHHHhcc---CCCCCchhHHHHHHHHHHHHHHhh
Confidence 000 11234557889999999999999998886533221 12223444332 11111 1 1
Q ss_pred -cCcccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeC--CeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005832 375 -FGGINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQ--GKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 375 -~~g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~--~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.++++||.||++.|+++|.+.++++|++|+++++|++|.+++ +++++|++.+|+++.||.||++. .. ++.
T Consensus 366 g~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~--~~-----lp~ 438 (650)
T 1vg0_A 366 GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIED--SY-----LSE 438 (650)
T ss_dssp SSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEG--GG-----BCT
T ss_pred ccCceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEECh--hh-----cCH
Confidence 137899999999999999999999999999999999999987 88999998889999999999832 22 221
Q ss_pred CCCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCC--ccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEE
Q 005832 452 EQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTD--CHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILH 529 (675)
Q Consensus 452 ~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~ 529 (675)
... ..... ..+..+.+.++.+..+.... ...++++..- ..-..+|+.+++. ++..+|+|+++++
T Consensus 439 -~~~-------~~~~~-~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~~~----g~~~~V~i~~~Ss-~~~~cP~G~~Vv~ 504 (650)
T 1vg0_A 439 -NTC-------SRVQY-RQISRAVLITDGSVLRTDADQQVSILTVPAEE----PGSFAVRVIELCS-STMTCMKGTYLVH 504 (650)
T ss_dssp -TTT-------TTCCC-EEEEEEEEEESSCSSCCSCCCCCEEEEECCSS----TTSCCEEEEEECG-GGTSSCTTCEEEE
T ss_pred -hHh-------ccccc-cceEEEEEEecCCCCCcCCCcceEEEEccCcc----CCCCCEEEEEeCC-CCCCCCCCCEEEE
Confidence 110 01111 13567777888775433221 1222333211 1123478888877 8889999999998
Q ss_pred EEec
Q 005832 530 IFTI 533 (675)
Q Consensus 530 ~~~~ 533 (675)
+.+.
T Consensus 505 lst~ 508 (650)
T 1vg0_A 505 LTCM 508 (650)
T ss_dssp EEEE
T ss_pred EEee
Confidence 8765
No 30
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=99.82 E-value=5.1e-20 Score=199.12 Aligned_cols=235 Identities=18% Similarity=0.178 Sum_probs=144.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCCCCcceeEee--CCeEE-ccccccccCCCCCCchHHHHHHHH
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIPGGSSGYYER--DGYTF-DVGSSVMFGFSDKGNLNLITQALA 230 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~~~gg~~~t~~~--~g~~~-d~G~~~~~g~~~~~~~~~~~~ll~ 230 (675)
...+||+|||||++||+||++|+++ |++|+|+|+.+.+||++.|... +|+.+ +.|+++++. ....+.++++
T Consensus 5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~-----~~~~~~~~~~ 79 (399)
T 1v0j_A 5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHT-----SNKRVWDYVR 79 (399)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEE-----SCHHHHHHHT
T ss_pred cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcC-----CcHHHHHHHH
Confidence 4468999999999999999999999 9999999999999999999988 68887 599998874 2345778888
Q ss_pred HcCCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhh
Q 005832 231 AVGCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQ 310 (675)
Q Consensus 231 ~lGl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (675)
++|+. ... .... +.+.+|..+.++.+...+.. +.... .....+..++.. ... ...
T Consensus 80 ~~g~~-~~~--~~~~-~~~~~G~~~~~p~~~~~~~~-l~~~~-~~~~~~~~~l~~------~~~-----~~~-------- 134 (399)
T 1v0j_A 80 QFTDF-TDY--RHRV-FAMHNGQAYQFPMGLGLVSQ-FFGKY-FTPEQARQLIAE------QAA-----EID-------- 134 (399)
T ss_dssp TTCCB-CCC--CCCE-EEEETTEEEEESSSHHHHHH-HHTSC-CCHHHHHHHHHH------HGG-----GSC--------
T ss_pred Hhhhh-hcc--ccce-EEEECCEEEeCCCCHHHHHH-Hhccc-CCHHHHHHHHHH------Hhh-----ccC--------
Confidence 88862 111 1112 22346777777766543322 11110 011111111110 000 000
Q ss_pred hhcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHH---HH--Hhh-cCcc-cccCC
Q 005832 311 FFKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMV---LC--DRH-FGGI-NYPVG 383 (675)
Q Consensus 311 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~--~~~-~~g~-~~p~g 383 (675)
.....++.+++.+.+.++.+..++..+.....+.++.+.++...... +. ... ...+ .+|+|
T Consensus 135 ------------~~~~~s~~e~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~p~g 202 (399)
T 1v0j_A 135 ------------TADAQNLEEKAISLIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSDTYEGLPTD 202 (399)
T ss_dssp ------------TTC----CCHHHHHHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCCSEEECBTT
T ss_pred ------------CCCcccHHHHHHHHHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhhhhcccccc
Confidence 01123455556665665666666655443334455666654432100 00 000 1123 28999
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEE-EcCEEEECCChhhHH
Q 005832 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREF-YAKTIISNATRWDTF 445 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i-~ad~VI~A~g~~~~~ 445 (675)
|+++++++|++ +.|++|++|++|++|..+ | + ++ .||+||+|+++..++
T Consensus 203 G~~~l~~~l~~---~~g~~I~l~~~V~~I~~~------v---~--~~~~aD~VI~t~p~~~l~ 251 (399)
T 1v0j_A 203 GYTAWLQNMAA---DHRIEVRLNTDWFDVRGQ------L---R--PGSPAAPVVYTGPLDRYF 251 (399)
T ss_dssp HHHHHHHHHTC---STTEEEECSCCHHHHHHH------H---T--TTSTTCCEEECSCHHHHT
T ss_pred cHHHHHHHHHh---cCCeEEEECCchhhhhhh------h---h--hcccCCEEEECCcHHHHH
Confidence 99999999886 458899999999998532 2 1 35 699999999987654
No 31
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=99.80 E-value=3.2e-19 Score=190.60 Aligned_cols=253 Identities=16% Similarity=0.134 Sum_probs=156.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEc-cccccccCCCCCCchHHHHHHHHHcCCce
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFD-VGSSVMFGFSDKGNLNLITQALAAVGCEM 236 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d-~G~~~~~g~~~~~~~~~~~~ll~~lGl~~ 236 (675)
+||+|||||++||+||++|+++|++|+|+|+.+.+||++.+....|+.+| .|++++... ...+.+++++++...
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~-----~~~~~~~~~~l~~~~ 76 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTN-----DKYIWDYVNDLVEFN 76 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEES-----CHHHHHHHHTTSCBC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCC-----CHHHHHHHHHhhhhh
Confidence 79999999999999999999999999999999999999999888999995 999998752 234667788877532
Q ss_pred eEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhhcChh
Q 005832 237 EVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFFKRPL 316 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (675)
.... . .. ...+|..+.++.+...+...+... ....+..+.... .. ..
T Consensus 77 ~~~~--~-~~-~~~~g~~~~~p~~~~~~~~l~~~~---~~~~~~~~l~~~-------~~----~~--------------- 123 (367)
T 1i8t_A 77 RFTN--S-PL-AIYKDKLFNLPFNMNTFHQMWGVK---DPQEAQNIINAQ-------KK----KY--------------- 123 (367)
T ss_dssp CCCC--C-CE-EEETTEEEESSBSHHHHHHHHCCC---CHHHHHHHHHHH-------TT----TT---------------
T ss_pred hccc--c-ce-EEECCeEEEcCCCHHHHHHHhccC---CHHHHHHHHHHH-------hh----cc---------------
Confidence 2111 1 11 223566666666654332221111 111111111110 00 00
Q ss_pred hhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH-HHHH----HhhcCc-cc-ccCCCHHHHH
Q 005832 317 ECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS-MVLC----DRHFGG-IN-YPVGGVGGIA 389 (675)
Q Consensus 317 ~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~----~~~~~g-~~-~p~gG~~~l~ 389 (675)
......++.+++.+.+.++....++........+.++.+.++.... +... ..+..+ +. +|+||+++++
T Consensus 124 -----~~~~~~s~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~p~gG~~~l~ 198 (367)
T 1i8t_A 124 -----GDKVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLI 198 (367)
T ss_dssp -----CCCCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEECBTTCHHHHH
T ss_pred -----CCCCCccHHHHHHHHHhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcccCCCHHHHH
Confidence 0012356666676666655555666555544445666666654321 0000 001122 32 8999999999
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCC
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAP 469 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~ 469 (675)
++|++ |++|++|++|++|.. + | ++.+|+||+|+++..++...++ .+++.
T Consensus 199 ~~l~~-----g~~i~l~~~V~~i~~---~---v------~~~~D~VV~a~p~~~~~~~~l~-------------~l~y~- 247 (367)
T 1i8t_A 199 EKMLE-----GVDVKLGIDFLKDKD---S---L------ASKAHRIIYTGPIDQYFDYRFG-------------ALEYR- 247 (367)
T ss_dssp HHHHT-----TSEEECSCCGGGSHH---H---H------HTTEEEEEECSCHHHHTTTTTC-------------CCCEE-
T ss_pred HHHhc-----CCEEEeCCceeeech---h---h------hccCCEEEEeccHHHHHHHhhC-------------CCCCc-
Confidence 99886 689999999998852 1 2 2468999999998775432222 22232
Q ss_pred cEEEEEEeeccccCC
Q 005832 470 SFLSIHMGVKAEVLP 484 (675)
Q Consensus 470 s~~~v~l~l~~~~~p 484 (675)
+...+.++++.+.++
T Consensus 248 s~~~v~~~~d~~~~~ 262 (367)
T 1i8t_A 248 SLKFETERHEFPNFQ 262 (367)
T ss_dssp EEEEEEEEESSSCSS
T ss_pred eEEEEEEEeccccCC
Confidence 456677888766443
No 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=99.79 E-value=4.2e-18 Score=182.99 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=147.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEee--CCeEE-ccccccccCCCCCCchHHHHHHHHHcC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYER--DGYTF-DVGSSVMFGFSDKGNLNLITQALAAVG 233 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~--~g~~~-d~G~~~~~g~~~~~~~~~~~~ll~~lG 233 (675)
.+||+|||||++||++|++|+++|++|+|+|+.+.+||++.+... .|+.+ |.|+++++.. ...+.++++++|
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~-----~~~~~~~~~~l~ 77 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTD-----NETVWNYVNKHA 77 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEES-----CHHHHHHHHTTS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCC-----CHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999887 78876 9999998742 235678888888
Q ss_pred CceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhh
Q 005832 234 CEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHE--KEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQF 311 (675)
Q Consensus 234 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (675)
.. . +...... ...+|..+.++.+...+.. .+... ......+... .
T Consensus 78 ~~-~--~~~~~~~-~~~~g~~~~~P~~~~~~~~----l~~~~~~~~~~~~~l~~-------~------------------ 124 (384)
T 2bi7_A 78 EM-M--PYVNRVK-ATVNGQVFSLPINLHTINQ----FFSKTCSPDEARALIAE-------K------------------ 124 (384)
T ss_dssp CE-E--ECCCCEE-EEETTEEEEESCCHHHHHH----HTTCCCCHHHHHHHHHH-------H------------------
T ss_pred hh-c--ccccceE-EEECCEEEECCCChhHHHH----HhcccCCHHHHHHHHHH-------h------------------
Confidence 52 1 1111122 2345666777766544322 22211 1111111110 0
Q ss_pred hcChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHH-HH----HHHhh-cCccc-ccCCC
Q 005832 312 FKRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINAS-MV----LCDRH-FGGIN-YPVGG 384 (675)
Q Consensus 312 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-~~----~~~~~-~~g~~-~p~gG 384 (675)
.... .....++.+++.+.+.++....++........+.++.+.++.... +. ..... .+.+. +|+||
T Consensus 125 ~~~~-------~~~~~sl~e~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~~~~p~gG 197 (384)
T 2bi7_A 125 GDST-------IADPQTFEEEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKFQGMPKCG 197 (384)
T ss_dssp SCCS-------CSSCCBHHHHHHHHHCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSEEEEETTH
T ss_pred hhcc-------CCCCcCHHHHHHHhhcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccccEEECcC
Confidence 0000 012456777777777666666666655554455666666654321 00 00011 12332 89999
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceee-EEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVT-KVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFG 446 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~-~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~ 446 (675)
+++++++|++ +.|++|+++++|+ +|.. .+|+||+|+++..++.
T Consensus 198 ~~~l~~~l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p~~~~~~ 241 (384)
T 2bi7_A 198 YTQMIKSILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGPLDAFYG 241 (384)
T ss_dssp HHHHHHHHHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSCHHHHTT
T ss_pred HHHHHHHHHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCCHHHHHH
Confidence 9999999886 3589999999998 7742 2999999999887654
No 33
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=99.67 E-value=5.2e-15 Score=161.81 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=61.5
Q ss_pred cccccCC-C---HHHHHHHHHHHHHHcCcEEEecc---eeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005832 377 GINYPVG-G---VGGIAKSLAKGLADKGSEILYKA---NVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 377 g~~~p~g-G---~~~l~~~L~~~l~~~Gv~v~~~~---~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
+++.+.+ | ...++++|.+.++++|++|++++ +|++|..+++++++|++.+|+++.||.||+|+|.+.. .|+
T Consensus 148 g~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~--~l~ 225 (438)
T 3dje_A 148 GYFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG--QFL 225 (438)
T ss_dssp EEEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG--GTS
T ss_pred EEEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh--hhc
Confidence 4455555 4 36889999999999999999999 9999999999999999999988999999999999863 454
Q ss_pred C
Q 005832 450 K 450 (675)
Q Consensus 450 ~ 450 (675)
+
T Consensus 226 ~ 226 (438)
T 3dje_A 226 D 226 (438)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=99.62 E-value=4e-15 Score=159.17 Aligned_cols=264 Identities=13% Similarity=0.108 Sum_probs=166.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEe-eCCeEE-ccccccccCCCCCCchHHHHHHHHHc
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYE-RDGYTF-DVGSSVMFGFSDKGNLNLITQALAAV 232 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~-~~g~~~-d~G~~~~~g~~~~~~~~~~~~ll~~l 232 (675)
...+||+|||||++||++|++|+++|++|+|+|+.+.+||++.+.. ..|+.+ |.|+|.++. ....+.++++++
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~-----~~~~~~~~~~~~ 101 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHT-----NSKDVFEYLSRF 101 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEE-----SCHHHHHHHHTS
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCC-----ChHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999877 678864 999999874 335678889998
Q ss_pred CCceeEeeCCCeEEEEcCCCeEEEEcCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhhhhhhhccchhhHHHhhhh
Q 005832 233 GCEMEVIPDPTTVHFHLPNDLSVRVHREYSDFVAELTSKFPHEKEGVLAFYGECWKIFNALNSLELKSLEEPIYLFGQFF 312 (675)
Q Consensus 233 Gl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (675)
|... +..... +.+.+|..+.++.....+.. +... +........+.. . ..
T Consensus 102 ~~~~---~~~~~~-~~~~~g~l~~lP~~~~~~~~-l~~~-~~~~~~~~~~l~-------~------~~------------ 150 (397)
T 3hdq_A 102 TEWR---PYQHRV-LASVDGQLLPIPINLDTVNR-LYGL-NLTSFQVEEFFA-------S------VA------------ 150 (397)
T ss_dssp CCEE---ECCCBE-EEEETTEEEEESCCHHHHHH-HHTC-CCCHHHHHHHHH-------H------HC------------
T ss_pred hhcc---cccccc-eEEECCEEEEcCCChHHHHH-hhcc-CCCHHHHHHHHh-------h------cc------------
Confidence 8532 111111 22346777888766543321 2110 111111111111 0 00
Q ss_pred cChhhhhHHhhhccccHHHHHHHhCCCHHHHHHHhhhhhhhccCCCCCchHHHHHHHHH-----Hhh-cCcc-cccCCCH
Q 005832 313 KRPLECLTLAYYLPQNAGNIARKYIKDPQLLSFIDAECFIVSTINALQTPMINASMVLC-----DRH-FGGI-NYPVGGV 385 (675)
Q Consensus 313 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~~-~~g~-~~p~gG~ 385 (675)
.....+.++.+++.+.+..+....++..+..-..+.++.+.++.....+-. ..+ .+.. .+|+||.
T Consensus 151 --------~~~~~~~s~~e~~~~~~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~~~qg~P~gGy 222 (397)
T 3hdq_A 151 --------EKVEQVRTSEDVVVSKVGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFADTYQAMPLHGY 222 (397)
T ss_dssp --------CCCSSCCBHHHHHHHHHHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCCSEEEEETTCH
T ss_pred --------cCCCCCcCHHHHHHHhcCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhhhheeccCCCH
Confidence 001234677778877777777777777776666667777777543211100 000 1122 3799999
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLY 465 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~ 465 (675)
.+++++|++ ..|++|++|++|+++ +.++.+|+||+|++....+...++ ++
T Consensus 223 ~~l~e~l~~---~~g~~V~l~~~v~~~--------------~~~~~~d~vI~T~P~d~~~~~~~g-------------~L 272 (397)
T 3hdq_A 223 TRMFQNMLS---SPNIKVMLNTDYREI--------------ADFIPFQHMIYTGPVDAFFDFCYG-------------KL 272 (397)
T ss_dssp HHHHHHHTC---STTEEEEESCCGGGT--------------TTTSCEEEEEECSCHHHHTTTTTC-------------CC
T ss_pred HHHHHHHHh---ccCCEEEECCeEEec--------------cccccCCEEEEcCCHHHHHHHhcC-------------CC
Confidence 999888854 459999999999732 445679999998876544321111 12
Q ss_pred ccCCcEEEEEEeeccccCCCCCCccceeecc
Q 005832 466 VKAPSFLSIHMGVKAEVLPPDTDCHHFVLED 496 (675)
Q Consensus 466 ~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~ 496 (675)
.+ .|...++++++.+... +.+++.+++
T Consensus 273 ~y-rsl~~~~~~~~~~~~~---~~~~vn~~d 299 (397)
T 3hdq_A 273 PY-RSLEFRHETHDTEQLL---PTGTVNYPN 299 (397)
T ss_dssp CE-EEEEEEEEEESSSCSC---SSSEEECSS
T ss_pred CC-ceEEEEEEEeccccCC---CCeEEEeCC
Confidence 22 2466677788765432 235665554
No 35
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=99.62 E-value=1e-14 Score=154.80 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=69.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecC-CCCCCcceeEe----------eCCeEEccccccccCCCCCCchH
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY-VIPGGSSGYYE----------RDGYTFDVGSSVMFGFSDKGNLN 223 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~-~~~gg~~~t~~----------~~g~~~d~G~~~~~g~~~~~~~~ 223 (675)
...+||+|||||++||+||+.|+++|++|+|||+. +.+||++.++. ..|+.+|.|++++.. ...
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~-----~~~ 116 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPS-----FHP 116 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEET-----TCH
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecc-----hHH
Confidence 45689999999999999999999999999999999 99999999887 357899999988753 344
Q ss_pred HHHHHHHHcCCceeEe
Q 005832 224 LITQALAAVGCEMEVI 239 (675)
Q Consensus 224 ~~~~ll~~lGl~~~~~ 239 (675)
.+.++++++|+.....
T Consensus 117 ~~~~~~~~lGl~~~~~ 132 (376)
T 2e1m_A 117 LTLALIDKLGLKRRLF 132 (376)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCccee
Confidence 6789999999976543
No 36
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.60 E-value=2.4e-14 Score=153.40 Aligned_cols=212 Identities=18% Similarity=0.247 Sum_probs=119.5
Q ss_pred ccccCCC---HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH-HhhccCCCC
Q 005832 378 INYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT-FGKLLKGEQ 453 (675)
Q Consensus 378 ~~~p~gG---~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~-~~~Ll~~~~ 453 (675)
.+.+.+| ...+.+.|.+.+++.|++|+++++|++|..+++++++|++.+| ++.||.||+|+|.+.. +...++...
T Consensus 138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~ 216 (382)
T 1y56_B 138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKT 216 (382)
T ss_dssp EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCS
T ss_pred EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCc
Confidence 3444444 3688899999999999999999999999998888888998888 7999999999999862 223332110
Q ss_pred -CChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEe
Q 005832 454 -LPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (675)
Q Consensus 454 -lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~ 532 (675)
+|.. ..-...+.++.. ++... ...++..+ ...+|+. |. ++| .+.-..
T Consensus 217 ~~~~~------------~~~g~~~~~~~~--~~~~~-~~~~~~~~-------~~~~y~~-p~-------~~g--~~iG~~ 264 (382)
T 1y56_B 217 KIPIE------------PYKHQAVITQPI--KRGTI-NPMVISFK-------YGHAYLT-QT-------FHG--GIIGGI 264 (382)
T ss_dssp CCCCE------------EEEEEEEEECCC--STTSS-CSEEEEST-------TTTEEEE-CC-------SSS--CCEEEC
T ss_pred CcCCC------------eeEeEEEEEccC--CcccC-CCeEEecC-------CCeEEEE-Ee-------CCe--EEEecC
Confidence 2210 011111222211 11110 02222111 0113332 21 223 111100
Q ss_pred -cccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCc-eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCC
Q 005832 533 -ICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS-IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGM 610 (675)
Q Consensus 533 -~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~ 610 (675)
......+... ..++..+.+++.+. +++|++.+. ++..| .|.+...|+..| .++.
T Consensus 265 ~~~~~~~~~~~-------~~~~~~~~l~~~~~-~~~p~l~~~~~~~~~--------------~g~r~~t~d~~p--~ig~ 320 (382)
T 1y56_B 265 GYEIGPTYDLT-------PTYEFLREVSYYFT-KIIPALKNLLILRTW--------------AGYYAKTPDSNP--AIGR 320 (382)
T ss_dssp SCCBSSCCCCC-------CCHHHHHHHHHHHH-HHCGGGGGSEEEEEE--------------EEEEEECTTSCC--EEEE
T ss_pred CCCCCCCCCCC-------CCHHHHHHHHHHHH-HhCCCcCCCCceEEE--------------EeccccCCCCCc--Eecc
Confidence 1111111100 11345667778887 889998753 33222 344444454333 1221
Q ss_pred CCCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHHHh
Q 005832 611 PFNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADI 651 (675)
Q Consensus 611 p~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~~~ 651 (675)
....+|+|++..+ .|.|+..|..+|+.+|+.|....
T Consensus 321 ---~~~~~~~~~~~G~--~g~G~~~a~~~g~~la~~i~~~~ 356 (382)
T 1y56_B 321 ---IEELNDYYIAAGF--SGHGFMMAPAVGEMVAELITKGK 356 (382)
T ss_dssp ---ESSSBTEEEEECC--TTCHHHHHHHHHHHHHHHHHHSS
T ss_pred ---CCCCCCEEEEEec--CcchHhhhHHHHHHHHHHHhCCC
Confidence 1336899998664 47899999999999999998753
No 37
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.58 E-value=8.4e-14 Score=148.85 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=56.3
Q ss_pred CcccccCCC---HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 376 GGINYPVGG---VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG---~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++.+++.+| ...++++|.+.++++|++|+++++|++|..++++ ++|++.+| ++.||.||+|+|+|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 141 GATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp CEEEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred EEEEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence 345555555 2689999999999999999999999999998887 56888888 799999999999986
No 38
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=99.58 E-value=2.3e-13 Score=157.05 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=58.1
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
++.+++.+|. ..++++|.+.+++.|++|+++++|++|..+++++ .|++.+|+++.||.||+|+|.+.
T Consensus 404 gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v-~V~t~~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 404 SGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCW-LLNFAGDQQATHSVVVLANGHQI 473 (676)
T ss_dssp CEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred CcEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeE-EEEECCCCEEECCEEEECCCcch
Confidence 3555666653 6899999999999999999999999999998886 68888888899999999999885
No 39
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.57 E-value=2.6e-13 Score=145.52 Aligned_cols=64 Identities=27% Similarity=0.374 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CCC--EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+++.|++++++++|+.+..+++++++|... +|+ ++.||.||-|.|....+.+.++
T Consensus 103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g 169 (397)
T 3oz2_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAG 169 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCccccHHHHHcC
Confidence 445567788888999999999999999999988877653 333 5899999999998877666554
No 40
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=99.57 E-value=5.2e-14 Score=149.62 Aligned_cols=59 Identities=5% Similarity=0.147 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC--EEEcCEEEECCChhh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~--~i~ad~VI~A~g~~~ 443 (675)
...+.+.|.+.++++|++|+++++|++|..++++++.|++.+|+ ++.||.||+|+|.+.
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence 36889999999999999999999999999887663458888884 799999999999986
No 41
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=99.56 E-value=4.4e-14 Score=151.34 Aligned_cols=205 Identities=13% Similarity=0.169 Sum_probs=115.6
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH-HhhccCCC
Q 005832 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT-FGKLLKGE 452 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~-~~~Ll~~~ 452 (675)
+.+++.+|. ..+.+.|.+.+++.|++|+++++|++|..+++++ +|++.+| ++.||.||+|+|.+.. +...++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~- 228 (382)
T 1ryi_A 152 ASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEAL-FIKTPSG-DVWANHVVVASGVWSGMFFKQLGL- 228 (382)
T ss_dssp EEEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSE-EEEETTE-EEEEEEEEECCGGGTHHHHHHTTC-
T ss_pred EEEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEE-EEEcCCc-eEEcCEEEECCChhHHHHHHhcCC-
Confidence 344454443 6789999999999999999999999999887777 6888877 7999999999998753 2222221
Q ss_pred CCChHHHHHHHhhccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEe
Q 005832 453 QLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFT 532 (675)
Q Consensus 453 ~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~ 532 (675)
.+|.. ......+.++.+. +.. ...++.+ ..|+ .|. ++|. +.+-.
T Consensus 229 ~~~~~------------~~~g~~~~~~~~~--~~~--~~~~~~~----------~~~~-~p~-------~~g~--~~vG~ 272 (382)
T 1ryi_A 229 NNAFL------------PVKGECLSVWNDD--IPL--TKTLYHD----------HCYI-VPR-------KSGR--LVVGA 272 (382)
T ss_dssp CCCCE------------EEEEEEEEEECCS--SCC--CSEEEET----------TEEE-EEC-------TTSE--EEEEC
T ss_pred CCcee------------ccceEEEEECCCC--CCc--cceEEcC----------CEEE-EEc-------CCCe--EEEee
Confidence 11110 0111222333221 111 1122211 1222 121 1232 11111
Q ss_pred cccchhhccCChhhHHHHHHHHHHHHHHHHHHhhCCCCcCc-eEEEEecChhHHHHHhcCCCCcccCCCCCCCCCCCCCC
Q 005832 533 ICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQS-IAFREIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMP 611 (675)
Q Consensus 533 ~~~~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~~~~~~p 611 (675)
......+... ..++..+.+++.+. +++|++.+. ++..+ .|.+...|+..+ +++.
T Consensus 273 ~~~~~~~~~~-------~~~~~~~~l~~~~~-~~~p~l~~~~~~~~w--------------~g~~~~t~d~~p--~ig~- 327 (382)
T 1ryi_A 273 TMKPGDWSET-------PDLGGLESVMKKAK-TMLPAIQNMKVDRFW--------------AGLRPGTKDGKP--YIGR- 327 (382)
T ss_dssp CCEETCCCCS-------CCHHHHHHHHHHHH-HHCGGGGGSEEEEEE--------------EEEEEECSSSCC--EEEE-
T ss_pred cccccCCCCC-------CCHHHHHHHHHHHH-HhCCCcCCCceeeEE--------------EEecccCCCCCc--Eecc-
Confidence 1111112111 11345667778887 889988753 33222 233333343322 1111
Q ss_pred CCCCCCCcEEEeCCCccCCCChhHHhhhHHHHHHHHHH
Q 005832 612 FNTTGINGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 649 (675)
Q Consensus 612 ~~~t~i~gLylaG~~~~pG~Gv~gA~~SG~~aA~~Il~ 649 (675)
....+|+|++++. .|.|+..|..+|+.+|+.|..
T Consensus 328 --~~~~~~l~~~~G~--~g~G~~~a~~~g~~la~~i~~ 361 (382)
T 1ryi_A 328 --HPEDSRILFAAGH--FRNGILLAPATGALISDLIMN 361 (382)
T ss_dssp --ETTEEEEEEEECC--SSCTTTTHHHHHHHHHHHHTT
T ss_pred --CCCcCCEEEEEcC--CcchHHHhHHHHHHHHHHHhC
Confidence 1235799998774 478999999999999999864
No 42
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.55 E-value=1e-12 Score=141.62 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=53.1
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+|. ..+.+.|.+.+++.|++|+++++|++|..++++++ |++.+| ++.||.||+|+|.+.
T Consensus 141 ~~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~-v~t~~g-~i~a~~VV~A~G~~s 208 (397)
T 2oln_A 141 GFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPDADGVS-VTTDRG-TYRAGKVVLACGPYT 208 (397)
T ss_dssp EEEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEE-EEESSC-EEEEEEEEECCGGGH
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEE-EEECCC-EEEcCEEEEcCCcCh
Confidence 344455542 57888999999999999999999999998887765 777666 799999999999884
No 43
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.55 E-value=4e-13 Score=144.98 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=56.5
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+++.+|. ..+.+.|.+.+++.|++|+++++|++|..+++++++|++.+| ++.||.||+|+|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 162 ATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp EEEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 444555553 488899999999999999999999999988888888999888 699999999999876
No 44
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=99.54 E-value=9.9e-14 Score=160.27 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=56.8
Q ss_pred CcccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC-EEEcCEEEECCChhh
Q 005832 376 GGINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-EFYAKTIISNATRWD 443 (675)
Q Consensus 376 ~g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~-~i~ad~VI~A~g~~~ 443 (675)
++++++.+|. ..++++|.+.+++.|++|+++++|++|..+++++ .|++.+|+ ++.||.||+|+|.+.
T Consensus 399 gg~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v-~V~t~~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 399 DGIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQW-QLTFGQSQAAKHHATVILATGHRL 469 (689)
T ss_dssp CEEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred ceEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeE-EEEeCCCcEEEECCEEEECCCcch
Confidence 4556666654 6899999999999999999999999999988775 58888887 799999999999885
No 45
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=99.52 E-value=2.5e-12 Score=129.45 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=54.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcceeEeeCCeEEcccccccc
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSGYYERDGYTFDVGSSVMF 214 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~t~~~~g~~~d~G~~~~~ 214 (675)
.+||+||||||+||+||+.|+++|++|+||||.+.+||++.+.+.++..+|.|...+.
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~ 59 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFT 59 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccCCceeecCccccc
Confidence 5899999999999999999999999999999999999999999999999998876654
No 46
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.50 E-value=2e-12 Score=138.63 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+++.|.+.+++.|++|+++++|++|..+++++ .|++.+| ++.||.||+|+|.+.
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G~~~ 205 (389)
T 2gf3_A 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSV-KIETANG-SYTADKLIVSMGAWN 205 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCE-EEEETTE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeE-EEEeCCC-EEEeCEEEEecCccH
Confidence 5888999999999999999999999999877665 4777766 699999999999885
No 47
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=99.50 E-value=1.1e-13 Score=147.64 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=56.3
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005832 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+++.+.+|. ..+++.|.+.+++.|++|+++++|++|..+++++ .|++.+|+ +.||.||+|+|++. ..+++
T Consensus 137 ~~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~-~v~~~~g~-~~a~~vV~a~G~~s--~~l~~ 209 (372)
T 2uzz_A 137 GLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGV-TIETADGE-YQAKKAIVCAGTWV--KDLLP 209 (372)
T ss_dssp EEEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSE-EEEESSCE-EEEEEEEECCGGGG--GGTST
T ss_pred EEEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEE-EEEECCCe-EEcCEEEEcCCccH--Hhhcc
Confidence 444555553 5888999999999999999999999999877765 48888774 99999999999886 34554
No 48
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.44 E-value=1.3e-11 Score=132.63 Aligned_cols=64 Identities=27% Similarity=0.345 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCCEEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..+++++++|++ .++.++.||.||.|.|.+..+.+.++
T Consensus 103 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s~~~~~~g 169 (397)
T 3cgv_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAG 169 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred HHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcchHhHHhcC
Confidence 55677888888899999999999999999998888887 34568999999999999876666554
No 49
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=99.43 E-value=2.3e-12 Score=141.24 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEE---------------eCCeEEEEEeCCCCEE--EcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVIL---------------EQGKAVGVRLSDGREF--YAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~---------------~~~~v~gV~~~~G~~i--~ad~VI~A~g~~~~ 444 (675)
..+++.|.+.++++|++|+++++|++|.. +++++++|++.+| ++ .||.||+|+|+|..
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~ 255 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN 255 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence 58899999999999999999999999998 6677778998888 58 99999999999863
No 50
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=99.41 E-value=7.7e-12 Score=135.21 Aligned_cols=60 Identities=10% Similarity=0.185 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhcc
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+.+.|.+.+++ ++|+++++|++|..++++++ |++.+|+++.||.||.|.|.+..+.+.+
T Consensus 128 ~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~l 187 (407)
T 3rp8_A 128 ELQREMLDYWGR--DSVQFGKRVTRCEEDADGVT-VWFTDGSSASGDLLIAADGSHSALRPWV 187 (407)
T ss_dssp HHHHHHHHHHCG--GGEEESCCEEEEEEETTEEE-EEETTSCEEEESEEEECCCTTCSSHHHH
T ss_pred HHHHHHHHhCCc--CEEEECCEEEEEEecCCcEE-EEEcCCCEEeeCEEEECCCcChHHHHHh
Confidence 555667777765 89999999999999888765 8899999999999999999887666655
No 51
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.38 E-value=5.1e-11 Score=140.52 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=57.7
Q ss_pred cccccCCCH---HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005832 377 GINYPVGGV---GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 377 g~~~p~gG~---~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
+++.+.+|. ..++++|.+.++++|++|+++++|++|..+++++++|++.+| ++.||.||+|+|.+..
T Consensus 139 g~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~ 208 (830)
T 1pj5_A 139 GLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA 208 (830)
T ss_dssp EEEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred EEEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchH
Confidence 445555543 588999999999999999999999999998888888998888 7999999999999863
No 52
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.38 E-value=1.3e-11 Score=133.91 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeE-EEEEeCCCC--EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKA-VGVRLSDGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v-~gV~~~~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..+++++ +.|++.+|+ ++.||.||.|+|.+..+.++++
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g 173 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFG 173 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcC
Confidence 566778888888899999999999999886654 456678888 6999999999998877666655
No 53
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=99.32 E-value=7.7e-11 Score=132.12 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCC----eEEEEEeCCC---CEEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQG----KAVGVRLSDG---REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~----~v~gV~~~~G---~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..+++ +++ |++.++ .++.||.||.|.|.+..+.+.++
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~-v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lg 190 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVT-ARLAGPDGEYDLRAGYLVGADGNRSLVRESLG 190 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEE-EEEEETTEEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEE-EEEEcCCCeEEEEeCEEEECCCCcchHHHHcC
Confidence 5667788889999999999999999999877 665 666665 67999999999999987777764
No 54
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=99.32 E-value=1.3e-10 Score=127.48 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..+++++++|++. +|+ ++.||.||.|.|.+..+.+.++
T Consensus 101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~ 169 (453)
T 3atr_A 101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLP 169 (453)
T ss_dssp HHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSC
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcC
Confidence 456678888888999999999999999998888877765 676 7999999999999877666665
No 55
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=99.30 E-value=3.3e-11 Score=134.22 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCC-C--EEEcC-EEEECCChhh
Q 005832 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDG-R--EFYAK-TIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G-~--~i~ad-~VI~A~g~~~ 443 (675)
|...+.+.|.+.+++.|++|+++++|++|+.+ +++++||++.++ + ++.|| .||+|+|.+.
T Consensus 200 g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 200 GGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp TTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred CHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 43489999999999999999999999999998 789999987543 2 58996 9999999775
No 56
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.30 E-value=1.8e-11 Score=132.48 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=55.0
Q ss_pred cccccCCCHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 377 GINYPVGGVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 377 g~~~p~gG~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+..++......+.+.|.+.+++.|++|+++++|++|..+++++ .|++.+| ++.||.||+|+|.+.
T Consensus 123 g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g-~i~ad~VIlAtG~~S 187 (417)
T 3v76_A 123 GQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGF-RVTTSAG-TVDAASLVVASGGKS 187 (417)
T ss_dssp TEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEE-EEEETTE-EEEESEEEECCCCSS
T ss_pred CEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEE-EEEECCc-EEEeeEEEECCCCcc
Confidence 3344555567889999999999999999999999999888764 5888888 799999999999875
No 57
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=99.28 E-value=2.1e-10 Score=129.40 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CC--CEEEcCEEEECCChhhHHhhccC
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DG--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
..+.+.|.+.+++.|++++.+++|++|..+++.+++|++. +| .++.||.||.|.|.+..+.+.++
T Consensus 128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg 195 (591)
T 3i3l_A 128 EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLG 195 (591)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcC
Confidence 3677778888999999999999999999876666778887 67 57999999999998876655543
No 58
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=99.28 E-value=3.4e-11 Score=135.91 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeC--CCC--EEEcCEEEECCChhhH
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLS--DGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~--~G~--~i~ad~VI~A~g~~~~ 444 (675)
...+.+.|.+.+++.|++|+++++|++|+.++ +++++|++. +|+ ++.||.||+|+|.+..
T Consensus 249 ~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 249 GPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp HHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 35788999999999999999999999999988 888888775 675 6899999999998763
No 59
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=99.27 E-value=6.6e-11 Score=133.66 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeC--CCC--EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLS--DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~--~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+++++|++|+.++ +++++|++. +|+ ++.||.||+|+|.+.
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 5788999999999999999999999999887 888888775 675 689999999999764
No 60
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.25 E-value=4e-11 Score=131.30 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
....+.+.|.+.+++.|++|+++++|++|..+++++++|++.+|+++.||.||+|+|.+.
T Consensus 132 ~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 132 KAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 346888999999999999999999999999888888889999998899999999999776
No 61
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=99.25 E-value=1.2e-09 Score=121.17 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC---EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR---EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~---~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..++++++ |++.+|+ ++.||.||.|.|.+..+.+.++
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 173 (499)
T 2qa2_A 108 TTESVLEEWALGRGAELLRGHTVRALTDEGDHVV-VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAG 173 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEE-EEEECSSCEEEEEEEEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEE-EEEEcCCCcEEEEeCEEEEccCcccHHHHHcC
Confidence 5666788888888999999999999998887775 7777765 7999999999999988777775
No 62
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=99.22 E-value=3.7e-10 Score=125.76 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe--CCCC--EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~--~~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..+++++++|++ .+|+ ++.||.||.|.|.+..+.+.++
T Consensus 112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~lg 179 (512)
T 3e1t_A 112 RFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVG 179 (512)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGTC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHcC
Confidence 66777888888899999999999999999998877765 4574 7999999999999876665553
No 63
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=99.22 E-value=2e-11 Score=137.37 Aligned_cols=58 Identities=29% Similarity=0.483 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---C--CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VI~A~g~~~ 443 (675)
..++..|.+.++++|++|+++++|++|..+++++++|++.+ | .++.||.||+|+|+|.
T Consensus 170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 68889999999999999999999999999999998898764 4 3689999999999986
No 64
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=99.20 E-value=5.5e-10 Score=125.99 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeC--CCC--EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLS--DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~--~G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+++++|++|+.++ +++++|++. +|+ ++.||.||+|+|.+.
T Consensus 255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 255 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred HHHHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence 5788999999999999999999999999887 888888875 665 589999999999764
No 65
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=99.17 E-value=1.8e-10 Score=129.74 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe--CCC-CEEEcCEEEECCChhhHHhhccC
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL--SDG-REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~--~~G-~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
..+.+.|.+.+++.|++|+++++|++|..++++++ |++ .+| +++.||.||.|.|.+..+.+.++
T Consensus 148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~-v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lG 214 (570)
T 3fmw_A 148 SRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVE-VTVAGPSGPYPVRARYGVGCDGGRSTVRRLAA 214 (570)
T ss_dssp HHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEE-EEEEETTEEEEEEESEEEECSCSSCHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEE-EEEEeCCCcEEEEeCEEEEcCCCCchHHHHcC
Confidence 36677788888888999999999999998877765 666 778 68999999999999888777775
No 66
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.16 E-value=4.6e-10 Score=124.90 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+++++|++|..+++++++|++.+|+++.||.||+|+|.+.
T Consensus 220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA 277 (549)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 4677889999999999999999999999988889899999999999999999999875
No 67
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.15 E-value=1.7e-10 Score=124.32 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEe----CCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILE----QGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~----~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
....+.+.|.+.+++.|++|+++++|++|..+ ++++ .|++.+| ++.||.||+|+|.+.
T Consensus 107 ~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 107 GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLIVATGGLS 168 (401)
T ss_dssp CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEEECCCCSS
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEEECCCCcc
Confidence 34578888999999999999999999999876 5554 5877777 799999999999765
No 68
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=99.14 E-value=3e-11 Score=127.84 Aligned_cols=194 Identities=18% Similarity=0.148 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLY 465 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~ 465 (675)
..++++|.+.++++|++|+. ++|++|...+ .+.||.||+|+|++. ..+++. +|-
T Consensus 142 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~------------~~~a~~VV~A~G~~s--~~l~~~--~~l--------- 195 (351)
T 3g3e_A 142 KNYLQWLTERLTERGVKFFQ-RKVESFEEVA------------REGADVIVNCTGVWA--GALQRD--PLL--------- 195 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-CCCCCHHHHH------------HTTCSEEEECCGGGG--GGTSCC--TTC---------
T ss_pred HHHHHHHHHHHHHCCCEEEE-EEeCCHHHhh------------cCCCCEEEECCCcCh--HhhcCC--Cce---------
Confidence 58899999999999999998 8898874321 157999999999987 345542 221
Q ss_pred ccCCcEEEEEEeeccccCCCCCCccceeeccchhhhccCCCceEEecCCCCCCCCCCCCceEEEEEecccchhhccCChh
Q 005832 466 VKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGHHILHIFTICSIEDWEGLAQK 545 (675)
Q Consensus 466 ~~~~s~~~v~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~w~~~~~~ 545 (675)
.. .-...+.++.+ .. ...++..+.. . .....+|+. |. + + ..+ +-.......|...
T Consensus 196 ~p---~rg~~~~~~~~----~~--~~~~~~~~~~-~-~~~~~~y~~-p~-------~-~-~~~-iGg~~~~~~~~~~--- 250 (351)
T 3g3e_A 196 QP---GRGQIMKVDAP----WM--KHFILTHDPE-R-GIYNSPYII-PG-------T-Q-TVT-LGGIFQLGNWSEL--- 250 (351)
T ss_dssp EE---EEEEEEEEECT----TC--CSEEEECCTT-T-CTTCSCEEE-EC-------S-S-CEE-EECCCEETCCCCS---
T ss_pred ee---cCCcEEEEeCC----Cc--ceEEEecccc-C-CCCceeEEE-eC-------C-C-cEE-EeeeeecCCCCCC---
Confidence 11 11122233322 11 1122211000 0 000112322 21 1 1 111 1111111122110
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCcCc-eEEEEecChhHHHHHhcCCCCcccCCCCCCCC--CCCCCCCCCCCCCcEEE
Q 005832 546 DYDAKKELVADEIINRLENKLFPGLKQS-IAFREIGSPKTHRRYLARDQGTYGPMPRGTPK--GLLGMPFNTTGINGLYC 622 (675)
Q Consensus 546 ~~~~~ke~~~~~il~~L~~~~~P~l~~~-i~~~~v~tP~~~~~~~~~~~G~yg~~p~~~~~--~~~~~p~~~t~i~gLyl 622 (675)
..++..+.+++.+. +++|.+.+. ++..| .|.+...|+ .+. ..+++ ....+|+|+
T Consensus 251 ----~~~~~~~~l~~~~~-~~~P~l~~~~i~~~w--------------~G~r~~t~D-~p~~~~~ig~---~~~~~~~~~ 307 (351)
T 3g3e_A 251 ----NNIQDHNTIWEGCC-RLEPTLKNARIIGER--------------TGFRPVRPQ-IRLEREQLRT---GPSNTEVIH 307 (351)
T ss_dssp ----CCHHHHHHHHHHHH-HHCGGGGGCEEEEEE--------------EEEEEECSS-CEEEEEEECC---SSSCEEEEE
T ss_pred ----CCHHHHHHHHHHHH-HhCCCccCCcEeeee--------------EeeCCCCCC-ccceeeeccC---CCCCCeEEE
Confidence 11344667778887 889998743 33333 344444444 220 01111 123689999
Q ss_pred eCCCccCCCChhHHhhhHHHHHHHHHHHhCCcc
Q 005832 623 VGDSCFPGQGVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 623 aG~~~~pG~Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
+..+ .|.|+..+..+|+.+|+.|.+.+...+
T Consensus 308 ~~G~--~g~G~~~ap~~g~~la~li~~~~~~~~ 338 (351)
T 3g3e_A 308 NYGH--GGYGLTIHWGCALEAAKLFGRILEEKK 338 (351)
T ss_dssp EECC--TTCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeCC--CcchHhhhHHHHHHHHHHHHHHHHhcc
Confidence 7774 478999999999999999988776544
No 69
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=99.14 E-value=2.8e-11 Score=132.48 Aligned_cols=91 Identities=20% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCCCCCCCccEEEECCChhHHHHHHHHHHcCCeEEEE
Q 005832 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMSRGADDYDAIVIGSGIGGLVAATQLAVKGARVLVL 186 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~ 186 (675)
.||++.+||..|+++.....++.|..+++++.+.....++..+..+.....+||+|||||++||+||++|++.|++|+||
T Consensus 72 vCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~ 151 (456)
T 2vdc_G 72 ICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVY 151 (456)
T ss_dssp HCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 69999999999998875458899999999988766655555433333356789999999999999999999999999999
Q ss_pred ecCCCCCCcce
Q 005832 187 EKYVIPGGSSG 197 (675)
Q Consensus 187 e~~~~~gg~~~ 197 (675)
|+.+.+||...
T Consensus 152 e~~~~~GG~l~ 162 (456)
T 2vdc_G 152 DRYDRMGGLLV 162 (456)
T ss_dssp CSSSSCSTHHH
T ss_pred eccCCCCCeee
Confidence 99999998654
No 70
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=99.12 E-value=8.5e-10 Score=117.12 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=36.2
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (675)
..++||+|||||++|+++|++|+++|++|+|+|+....+|
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g 43 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence 4568999999999999999999999999999999876554
No 71
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=99.10 E-value=3.9e-09 Score=113.55 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=41.7
Q ss_pred CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005832 400 GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 400 Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+.+|+++++|+++...++..+.|+++||++++||.||-|-|....+.+.+.
T Consensus 123 ~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~ 173 (412)
T 4hb9_A 123 ANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSKVRKQYL 173 (412)
T ss_dssp TTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCHHHHHHS
T ss_pred cceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcchHHHhC
Confidence 557999999999987544333589999999999999999999887766654
No 72
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=99.10 E-value=4.2e-10 Score=126.84 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~~ 443 (675)
..++..+.+.++++|++|+++++|++|..+++++++|++. +|+ ++.||.||+|+|+|.
T Consensus 188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 5788889999999999999999999999998888888864 344 699999999999996
No 73
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=99.05 E-value=1.1e-09 Score=117.82 Aligned_cols=65 Identities=17% Similarity=0.323 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEE-EEEeCCCCEEEcCEEEECCChhhHHhhccCC
Q 005832 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAV-GVRLSDGREFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~-gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+.+.|.+.+++. |++|+++++|++|..++++++ .|++.+|+++.||.||.|.|.+..+.+.++.
T Consensus 108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~ 174 (399)
T 2x3n_A 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLD 174 (399)
T ss_dssp HHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSC
T ss_pred HHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCC
Confidence 6677788888888 999999999999998877764 5888999899999999999998877666653
No 74
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=99.04 E-value=2e-09 Score=119.36 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC---EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR---EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~---~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|..++++++ |++.+++ +++||.||.|.|.+..+.+.++
T Consensus 107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~-v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg 172 (500)
T 2qa1_A 107 VTETHLEQWATGLGADIRRGHEVLSLTDDGAGVT-VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAG 172 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEE-EEEEETTEEEEEEESEEEECCCTTCHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEE-EEEEcCCCCEEEEeCEEEECCCcchHHHHHcC
Confidence 5566788888888999999999999999888776 7777765 7999999999999988777775
No 75
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=99.04 E-value=3.1e-09 Score=119.97 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEe---CCCC--EEEcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~~ 444 (675)
..+.+.|.+.+++.|++|+++++|++|..+ +++++||.. .+|+ ++.|+.||+|+|.+..
T Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence 578899999999999999999999999986 778888875 4665 5899999999998753
No 76
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=99.03 E-value=5.3e-09 Score=111.72 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++.|++|+++++|++|.. ++ .|++.+|+++.||.||.|.|.+....+.+.
T Consensus 108 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~---~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~ 167 (379)
T 3alj_A 108 HLHDALVNRARALGVDISVNSEAVAADP-VG---RLTLQTGEVLEADLIVGADGVGSKVRDSIG 167 (379)
T ss_dssp HHHHHHHHHHHHTTCEEESSCCEEEEET-TT---EEEETTSCEEECSEEEECCCTTCHHHHHHC
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC---EEEECCCCEEEcCEEEECCCccHHHHHHhc
Confidence 5667788888889999999999999987 44 477889989999999999999887766665
No 77
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=99.02 E-value=3.7e-09 Score=113.68 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005832 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
+.+.|.+.+ .|++|+++++|++|..++++++ |++.+|+++.+|.||.|.|.+..+.+.+.
T Consensus 101 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~vr~~~~ 160 (397)
T 2vou_A 101 IYGGLYELF--GPERYHTSKCLVGLSQDSETVQ-MRFSDGTKAEANWVIGADGGASVVRKRLL 160 (397)
T ss_dssp HHHHHHHHH--CSTTEETTCCEEEEEECSSCEE-EEETTSCEEEESEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecCCEEE-EEECCCCEEECCEEEECCCcchhHHHHhc
Confidence 334444444 4899999999999998877765 88899999999999999999887666554
No 78
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=99.01 E-value=2.1e-09 Score=119.31 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~~ 444 (675)
..++..|.+.++++|++|+++++|++|..++ ++++|++ .+|+ ++.||.||+|+|+|..
T Consensus 149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 149 ARLVLANAQMVVRKGGEVLTRTRATSARREN-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence 5888999999999999999999999999877 4667877 3676 7899999999999863
No 79
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.00 E-value=2.5e-09 Score=109.55 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEeC---------CC-----CEEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLS---------DG-----REFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~~---------~G-----~~i~ad~VI~A~g~~~ 443 (675)
.+...|.+.+.+ .|++++++++|++|..+++++.+|++. +| .++.||.||+|+|...
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s 191 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 191 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCch
Confidence 455566777765 699999999999999988888888763 32 4789999999999653
No 80
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.99 E-value=3.8e-09 Score=119.35 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeCC------C---------CEEEcCEEEECCChhhHHh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSD------G---------REFYAKTIISNATRWDTFG 446 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~~------G---------~~i~ad~VI~A~g~~~~~~ 446 (675)
..+.+.|.+.+++.|++|+++++|++|..++ +++++|++.+ | .++.||.||.|.|.+..+.
T Consensus 144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr 220 (584)
T 2gmh_A 144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLA 220 (584)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHH
Confidence 3677888999999999999999999999875 5688888763 3 6799999999999886543
No 81
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.97 E-value=6.6e-09 Score=118.41 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~~ 444 (675)
..+...|.+.+++.|++|+.++.|++|+.++++++||.. .+|+ .+.|+.||+|+|.+..
T Consensus 158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 221 (660)
T 2bs2_A 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR 221 (660)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence 478899999999999999999999999998888888865 4676 4899999999998753
No 82
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.95 E-value=3.6e-09 Score=113.84 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+. +++|+++++|++|..++++++ |++.+|+++.||.||.|.|.+....+.+.
T Consensus 129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~ad~vV~AdG~~S~vR~~l~ 189 (398)
T 2xdo_A 129 DLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWT-LTFENKPSETADLVILANGGMSKVRKFVT 189 (398)
T ss_dssp HHHHHHHHTSC--TTSEEESCCEEEEEECSSSEE-EEETTSCCEEESEEEECSCTTCSCCTTTC
T ss_pred HHHHHHHhhcC--CCEEEECCEEEEEEECCCEEE-EEECCCcEEecCEEEECCCcchhHHhhcc
Confidence 44455555553 368999999999998877664 88899988999999999998876666554
No 83
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.94 E-value=4.1e-10 Score=124.81 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=56.2
Q ss_pred CCCC-CCCCCCcccccccccccchhhccccccccchhhhc--------CCCCC-CCCCCCCccEEEECCChhHHHHHHHH
Q 005832 107 NFNG-STLRSEDLGCGESERNRDFALMAKTVMSVDNLVEI--------GGNEG-MSRGADDYDAIVIGSGIGGLVAATQL 176 (675)
Q Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~iig~g~~g~~~a~~l 176 (675)
.||. +.+|+..|...+ ..+..+...+........... ...+. .......+||+|||||++||++|..|
T Consensus 34 vc~~~~~l~~~~g~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~L 111 (497)
T 2bry_A 34 VLSSFQGLCRALGVESG--GGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVEL 111 (497)
T ss_dssp HHHHHHHHHHHHTCCTT--CHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC--CCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHH
Confidence 4665 557887775532 234555555554444221110 00111 11234578999999999999999999
Q ss_pred HHcCCeEEEEecCCCCCC
Q 005832 177 AVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 177 ~~~g~~v~~~e~~~~~gg 194 (675)
++.|++|+|+|+.+.+|+
T Consensus 112 a~~G~~V~liEk~~~~g~ 129 (497)
T 2bry_A 112 ALLGARVVLVEKRIKFSR 129 (497)
T ss_dssp HHTTCEEEEEESCSSCCC
T ss_pred HHCCCeEEEEEeccccCC
Confidence 999999999999987764
No 84
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.94 E-value=2.3e-08 Score=113.22 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~~ 444 (675)
..+...|.+.+++.|++|+.++.|++|+.++++++||.+ .+|+ ++.|+.||+|+|.+..
T Consensus 155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR 218 (621)
T ss_dssp HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence 578899999999999999999999999998899988876 4675 6899999999998764
No 85
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=98.91 E-value=6.8e-09 Score=109.22 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.+.+.+++.|++++++++|++|..+++++.+|++.+| ++.+|.||+|+|.+.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~ 132 (357)
T 4a9w_A 77 EVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG 132 (357)
T ss_dssp HHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence 45555677778889999999999999998887655888887 799999999999754
No 86
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.91 E-value=7.1e-09 Score=111.98 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHc-C-cEEEecceeeEEEEeCCeEEEEEeCC---C--CEEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADK-G-SEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~-G-v~v~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+++. | ++|+++++|++|.. +++++ |++.+ | +++.||.||.|.|.+..+.+.+.
T Consensus 108 ~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~-v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~ 176 (410)
T 3c96_A 108 ELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRV-LIGARDGHGKPQALGADVLVGADGIHSAVRAHLH 176 (410)
T ss_dssp HHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEE-EEEEEETTSCEEEEEESEEEECCCTTCHHHHHHC
T ss_pred HHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccE-EEEecCCCCCceEEecCEEEECCCccchhHHHhc
Confidence 5666677777663 6 58999999999988 55554 66654 7 47899999999999887776664
No 87
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.91 E-value=6.9e-09 Score=116.00 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.|.+.+++ .|++| ++++|++|..+++++++|++.+|+++.||.||+|+|.+.
T Consensus 124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s 180 (637)
T 2zxi_A 124 RYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFL 180 (637)
T ss_dssp HHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred HHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCc
Confidence 566778888888 49999 578999999999999999999999999999999999764
No 88
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.89 E-value=8.9e-09 Score=106.49 Aligned_cols=42 Identities=38% Similarity=0.567 Sum_probs=37.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++||+||+.|+++ |++|+|+|+...+||.+.
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~ 107 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence 346999999999999999999998 999999999999887443
No 89
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.89 E-value=7.2e-09 Score=111.17 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe-CCCC--EEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL-SDGR--EFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~-~~G~--~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+.+.|.+.+.+.|++|+++++|++|..+++..+.|++ .+|+ ++.||.||.|.|.+..+.+.++
T Consensus 104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~ 170 (394)
T 1k0i_A 104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIP 170 (394)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSC
T ss_pred HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcHHHHhcC
Confidence 45566778788889999999999999876432234776 6887 7999999999999887766664
No 90
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.89 E-value=2.6e-09 Score=115.29 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceee---------EEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVT---------KVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~---------~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.|.+.+++.|++|+++++|+ +|..+++++ +|++.+| ++.||.||+|+|++.
T Consensus 172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v-~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQ-IVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC--------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeE-EEEECCc-EEECCEEEECCCccH
Confidence 5788999999999999999999999 888777776 6877777 799999999999986
No 91
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.88 E-value=1.1e-08 Score=106.49 Aligned_cols=40 Identities=35% Similarity=0.608 Sum_probs=36.9
Q ss_pred CccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCCCcc
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPGGSS 196 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~gg~~ 196 (675)
.+||+|||||++||++|++|+++ |++|+|+|+...+||.+
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~ 120 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence 58999999999999999999997 99999999999887744
No 92
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=98.86 E-value=1.1e-08 Score=105.63 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=34.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (675)
+++|||+|||||++||+||++|+|+|++|+|+|++. +||
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg 42 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRN 42 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGG
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCC
Confidence 457999999999999999999999999999999974 444
No 93
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=98.86 E-value=1.3e-08 Score=114.07 Aligned_cols=43 Identities=33% Similarity=0.492 Sum_probs=39.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+||+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~ 61 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWY 61 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence 3468999999999999999999999999999999999998654
No 94
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=98.85 E-value=7.8e-09 Score=115.51 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCc--EEEecceeeEEEEeCC-eEEEEEeCCCCEEEcCEEEECCChh
Q 005832 387 GIAKSLAKGLADKGS--EILYKANVTKVILEQG-KAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv--~v~~~~~V~~I~~~~~-~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.+.+.+.+++.|+ +++++++|+++..+++ +.+.|++.+|+++.||.||+|+|..
T Consensus 88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~ 146 (540)
T 3gwf_A 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLL 146 (540)
T ss_dssp HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCccc
Confidence 344456666777787 8999999999998765 3345889999999999999999964
No 95
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.85 E-value=2.1e-08 Score=99.46 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.|.+.+++. |++++ +++|++|..+++++++|++.+|+++.||.||+|+|.+.
T Consensus 69 ~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s 125 (232)
T 2cul_A 69 AFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 125 (232)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 4445577788887 99998 57999999988888889999998899999999999753
No 96
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.84 E-value=1.7e-08 Score=112.73 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHH-cCcEEEecceeeEEEE-eCC------eEEEEEeC---CCC--EEEcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLAD-KGSEILYKANVTKVIL-EQG------KAVGVRLS---DGR--EFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~-~~~------~v~gV~~~---~G~--~i~ad~VI~A~g~~~~ 444 (675)
..+.+.|.+.+++ .|++|+++++|++|+. +++ +++||.+. +|+ ++.|+.||+|+|.+..
T Consensus 138 ~~l~~~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 209 (540)
T 1chu_A 138 REVETTLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK 209 (540)
T ss_dssp ----CCCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 3667778888888 6999999999999998 545 88888764 565 6899999999998764
No 97
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.84 E-value=1.3e-08 Score=114.25 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005832 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 387 ~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
.+.+.|.+.+++ .|++| ++++|++|..+++++++|++.+|+++.||.||+|+|.+..
T Consensus 125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 125 LYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp HHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred HHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 566778888888 59999 6789999999888898999999988999999999998753
No 98
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.83 E-value=5.7e-08 Score=109.89 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEe---CCCC--EEEcCEEEECCChhhHH
Q 005832 386 GGIAKSLAKGLADKG-SEILYKANVTKVILEQGKAVGVRL---SDGR--EFYAKTIISNATRWDTF 445 (675)
Q Consensus 386 ~~l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~---~~G~--~i~ad~VI~A~g~~~~~ 445 (675)
..+...|.+.+++.| ++|+++++|++|..++++++||.. .+|+ ++.|+.||+|+|.+...
T Consensus 134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 199 (602)
T ss_dssp HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence 478888999998899 999999999999999888888764 5676 68999999999987643
No 99
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.83 E-value=8.2e-08 Score=109.57 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHc-Cc-EEEecceeeEEEEeCC---eEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLADK-GS-EILYKANVTKVILEQG---KAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv-~v~~~~~V~~I~~~~~---~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
.+...|.+.+++. |+ +|+.++.|++|+.+++ +++||.. .+|+ ++.|+.||+|+|.+.
T Consensus 152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~ 218 (643)
T 1jnr_A 152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643)
T ss_dssp THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence 4566677777777 99 9999999999998877 8988874 5665 589999999999765
No 100
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.82 E-value=1.7e-08 Score=105.61 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 391 SLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 391 ~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
.+.+.+++.|++++++++|++|..+++.+ .|++.+|+++.+|.||+|+|..
T Consensus 70 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 70 GLVEQVAPFNPVYSLGERAETLEREGDLF-KVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp HHHHHHGGGCCEEEESCCEEEEEEETTEE-EEEETTSCEEEEEEEEECCTTS
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEECCCEE-EEEECCCCEEEeCEEEECCCCC
Confidence 34555666789999999999999887654 4778888889999999999974
No 101
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.82 E-value=2.2e-08 Score=112.32 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLADK-GSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.|.+.+++. |++|+ +..|+.|..+++++.+|++.+|+++.||.||+|+|.+.
T Consensus 118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s 174 (641)
T 3cp8_A 118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL 174 (641)
T ss_dssp HHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred HHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence 4566677888875 99995 56899999999999999999999999999999999764
No 102
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.81 E-value=1.6e-08 Score=107.04 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.+.+++.|++++++++|++|..++++...|++.+|+++.+|.||+|+|..
T Consensus 78 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 78 ESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp HHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence 33555666778999999999999887652334888889889999999999974
No 103
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.81 E-value=2.2e-09 Score=128.85 Aligned_cols=90 Identities=18% Similarity=0.004 Sum_probs=72.6
Q ss_pred CCCCCCCCCCcccccccccccchhhccccccccchhhhcCCCCCCC--------CCCCCccEEEECCChhHHHHHHHHHH
Q 005832 107 NFNGSTLRSEDLGCGESERNRDFALMAKTVMSVDNLVEIGGNEGMS--------RGADDYDAIVIGSGIGGLVAATQLAV 178 (675)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~iig~g~~g~~~a~~l~~ 178 (675)
.||++.+||+.|+++.....++.|..+++++.+.....+......+ .....+||+|||||++||+||.+|++
T Consensus 129 vCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpAGl~aA~~L~~ 208 (1025)
T 1gte_A 129 VCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLAR 208 (1025)
T ss_dssp HCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred CCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHHHHHHHHHHHh
Confidence 7999999999999887556789999999998886544333221111 11346899999999999999999999
Q ss_pred cCC-eEEEEecCCCCCCcc
Q 005832 179 KGA-RVLVLEKYVIPGGSS 196 (675)
Q Consensus 179 ~g~-~v~~~e~~~~~gg~~ 196 (675)
.|+ +|+|||+.+.+||..
T Consensus 209 ~G~~~Vtv~E~~~~~GG~~ 227 (1025)
T 1gte_A 209 LGYSDITIFEKQEYVGGLS 227 (1025)
T ss_dssp TTCCCEEEEESSSSCSTHH
T ss_pred cCCCcEEEEeCCCCCCccc
Confidence 999 799999999999965
No 104
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.80 E-value=1.1e-07 Score=104.62 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC-CCEEEcCEEEECCChhhH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD-GREFYAKTIISNATRWDT 444 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~-G~~i~ad~VI~A~g~~~~ 444 (675)
..+.+.|.+.+++.|++|+.+++| +|..+++++.+|.+.+ +.++.||.||+|+|.+..
T Consensus 119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 119 REIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp HHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred HHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence 477888998888889999999999 9998888988887642 235789999999998764
No 105
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.79 E-value=6e-08 Score=104.90 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
...+.+.+.+.++++|++|+++++|++|..+++++++|++.+|+++.+|.||+|+|...
T Consensus 193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p 251 (415)
T 3lxd_A 193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVP 251 (415)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence 35788889999999999999999999999888888889999999999999999999653
No 106
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.78 E-value=1.2e-07 Score=104.60 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..+++++ .|++.+|+++.+|.||+|+|...
T Consensus 232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~aD~Vi~A~G~~p 288 (484)
T 3o0h_A 232 YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCY-NVVLTNGQTICADRVMLATGRVP 288 (484)
T ss_dssp HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEE-EEEECCCcEEEcCEEEEeeCCCc
Confidence 3667778888999999999999999999877766 58899998999999999999653
No 107
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.77 E-value=8.4e-09 Score=107.47 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCCh
Q 005832 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~ 441 (675)
.+.+.+.+++.|++++++++|++|..+++..+.|++.+|+ +.+|.||+|+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~ 121 (332)
T 3lzw_A 70 INNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGN 121 (332)
T ss_dssp HHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTT
T ss_pred HHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCC
Confidence 3345566677799999999999999876633458888886 999999999997
No 108
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=98.77 E-value=3.8e-08 Score=110.28 Aligned_cols=43 Identities=33% Similarity=0.428 Sum_probs=39.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+||+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~ 56 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY 56 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence 3468999999999999999999999999999999999998654
No 109
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=98.76 E-value=3.1e-08 Score=102.62 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+++.|+++++ ++|++|..+++.+. |++.+|+++.+|.||+|+|...
T Consensus 74 ~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~-v~~~~g~~~~~d~lvlAtG~~~ 125 (323)
T 3f8d_A 74 KVFNKHIEKYEVPVLL-DIVEKIENRGDEFV-VKTKRKGEFKADSVILGIGVKR 125 (323)
T ss_dssp HHHHHHHHTTTCCEEE-SCEEEEEEC--CEE-EEESSSCEEEEEEEEECCCCEE
T ss_pred HHHHHHHHHcCCEEEE-EEEEEEEecCCEEE-EEECCCCEEEcCEEEECcCCCC
Confidence 3355666777999999 88999988766654 8888888999999999999763
No 110
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=98.73 E-value=1.9e-08 Score=112.47 Aligned_cols=42 Identities=33% Similarity=0.436 Sum_probs=38.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~ 49 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY 49 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998543
No 111
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.72 E-value=7.1e-08 Score=107.27 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhhHH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDTF 445 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~ 445 (675)
..+.+.|.+.+++.|++++.+ +|++|..+ ++.+++|++.+|+++.||.||.|.|.+...
T Consensus 173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 367788888898999999999 89999885 455677999999889999999999988654
No 112
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.71 E-value=3.3e-08 Score=106.54 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
...+.+.+.+.++++|++|+++++|++|..+++++.+|++.+|+++.+|.||+|+|..
T Consensus 183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~ 240 (404)
T 3fg2_P 183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVI 240 (404)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEE
T ss_pred CHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCc
Confidence 4578888999999999999999999999988888889999999999999999999964
No 113
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.68 E-value=6.7e-08 Score=108.38 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---C--CEEEcCEEEECCChhhHHhhccC
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWDTFGKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VI~A~g~~~~~~~Ll~ 450 (675)
.+-+.|.+.+++. |+++++|++|..++++++ |++.+ | +++.||.||.|.|.+..+.+.++
T Consensus 139 ~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~-v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg 203 (549)
T 2r0c_A 139 WLAPLLAEAVGER---LRTRSRLDSFEQRDDHVR-ATITDLRTGATRAVHARYLVACDGASSPTRKALG 203 (549)
T ss_dssp HHHHHHHHHHGGG---EECSEEEEEEEECSSCEE-EEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHT
T ss_pred HHHHHHHHHHHHh---cccCcEEEEEEEeCCEEE-EEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcC
Confidence 4556677777765 999999999998887765 65544 6 36999999999999987777765
No 114
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.68 E-value=2.2e-07 Score=103.99 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeEEEEEeCCCCEEEcCEEEECCChhhHH
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDTF 445 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VI~A~g~~~~~ 445 (675)
..+.+.|.+.+++.|++++.+ +|++|..++ +.+++|++.+|+++.||.||.|.|.+...
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 578899999999999999999 899998854 45667889999889999999999987654
No 115
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.68 E-value=7.6e-08 Score=100.42 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe---CCCCEEEcCEEEECCChh
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL---SDGREFYAKTIISNATRW 442 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~---~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.+.+++.|+++++++ |++|..+++.+. +.+ .++.++.+|.||+|+|..
T Consensus 88 ~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~-v~~~~~~~~~~~~~d~vvlAtG~~ 141 (338)
T 3itj_A 88 DRMREQSTKFGTEIITET-VSKVDLSSKPFK-LWTEFNEDAEPVTTDAIILATGAS 141 (338)
T ss_dssp HHHHHHHHHTTCEEECSC-EEEEECSSSSEE-EEETTCSSSCCEEEEEEEECCCEE
T ss_pred HHHHHHHHHcCCEEEEeE-EEEEEEcCCEEE-EEEEecCCCcEEEeCEEEECcCCC
Confidence 335566677899999999 999988777664 655 467789999999999974
No 116
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.67 E-value=2.7e-07 Score=101.19 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEE-eCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVR-LSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~-~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..+++++..|+ +.+|+ +.+|.||+|+|...
T Consensus 211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p 268 (463)
T 4dna_A 211 QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMP 268 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCccc
Confidence 57788899999999999999999999988755545688 88887 99999999999654
No 117
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.67 E-value=2.3e-07 Score=87.76 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 388 IAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 388 l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+.+++.|++++++ +|++|..+++.+ .|++++| ++.+|.||+|+|...
T Consensus 58 ~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~-~v~~~~g-~i~ad~vI~A~G~~~ 110 (180)
T 2ywl_A 58 LLRRLEAHARRYGAEVRPG-VVKGVRDMGGVF-EVETEEG-VEKAERLLLCTHKDP 110 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEC-CCCEEEECSSSE-EEECSSC-EEEEEEEEECCTTCC
T ss_pred HHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEE-EEEECCC-EEEECEEEECCCCCC
Confidence 3344667778889999999 999998876654 4788888 899999999999764
No 118
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.66 E-value=2e-07 Score=106.18 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHc--CcEEEecceeeEEEEeCC---eEEEEEe---CCCC--EEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLADK--GSEILYKANVTKVILEQG---KAVGVRL---SDGR--EFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~--Gv~v~~~~~V~~I~~~~~---~v~gV~~---~~G~--~i~ad~VI~A~g~~~ 443 (675)
.+...|.+.+++. |++|+.++.|++|+.+++ +++||.. .+|+ .+.|+.||+|+|...
T Consensus 167 ~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g 233 (662)
T 3gyx_A 167 SYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAV 233 (662)
T ss_dssp SHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccc
Confidence 5677788888887 999999999999999876 8998865 4564 589999999999764
No 119
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=98.66 E-value=1.1e-07 Score=103.84 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=38.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++||++|..|++.|. +|+|||+.+.+||...
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~ 48 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWN 48 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence 46899999999999999999999999 9999999999988554
No 120
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.65 E-value=1.8e-07 Score=105.02 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHc-CcEEEecceeeEEEEe-CCeEEEEEeCCCCEEEcCEEEECCChhhHH
Q 005832 387 GIAKSLAKGLADK-GSEILYKANVTKVILE-QGKAVGVRLSDGREFYAKTIISNATRWDTF 445 (675)
Q Consensus 387 ~l~~~L~~~l~~~-Gv~v~~~~~V~~I~~~-~~~v~gV~~~~G~~i~ad~VI~A~g~~~~~ 445 (675)
.+.+.|.+.+++. |++++++ +|++|..+ ++.+++|++.+|+++.||.||.|+|.+..+
T Consensus 195 ~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 195 LVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 6778899999998 9999999 99999875 456678999999889999999999987654
No 121
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.64 E-value=3e-07 Score=102.42 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC-CeE--EEEEeCCCC-EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ-GKA--VGVRLSDGR-EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~-~~v--~gV~~~~G~-~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..++ +++ +.|++.+|+ ++.+|.||+|+|.+.
T Consensus 255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p 316 (523)
T 1mo9_A 255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP 316 (523)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEE
T ss_pred HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCcc
Confidence 5778889999999999999999999998754 333 357788887 899999999999653
No 122
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=98.63 E-value=2.9e-07 Score=95.02 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|+++++ ++|++|..+++.+. |++.+|+++.+|.||+|+|...
T Consensus 65 l~~~~~~~~v~~~~-~~v~~i~~~~~~~~-v~~~~g~~~~~~~vv~AtG~~~ 114 (311)
T 2q0l_A 65 WQEQCFRFGLKHEM-TAVQRVSKKDSHFV-ILAEDGKTFEAKSVIIATGGSP 114 (311)
T ss_dssp HHHHHHTTSCEEEC-SCEEEEEEETTEEE-EEETTSCEEEEEEEEECCCEEE
T ss_pred HHHHHHHcCCEEEE-EEEEEEEEcCCEEE-EEEcCCCEEECCEEEECCCCCC
Confidence 44455667899988 78999998877554 7778888999999999999653
No 123
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=98.63 E-value=5e-08 Score=100.77 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=41.1
Q ss_pred HHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC--CCC--EEEcCEEEECCCh
Q 005832 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DGR--EFYAKTIISNATR 441 (675)
Q Consensus 393 ~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G~--~i~ad~VI~A~g~ 441 (675)
.+.+++.|++|+++++|++|..+++++.+|++. +|+ ++.+|.||+|+|.
T Consensus 190 ~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~ 242 (315)
T 3r9u_A 190 EKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL 242 (315)
T ss_dssp HHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred HHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence 344467899999999999999888788778776 786 7899999999984
No 124
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.62 E-value=2.5e-07 Score=95.88 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC----C--CEEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD----G--REFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~----G--~~i~ad~VI~A~g~~ 442 (675)
..+.+.+.+.+++.|++|+++++|++|..+++++.+|++.+ | +++.+|.||+|+|..
T Consensus 184 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~ 246 (320)
T 1trb_A 184 KILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 246 (320)
T ss_dssp HHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEE
T ss_pred HHHHHHHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCC
Confidence 45667788888999999999999999988776777788765 5 478999999999853
No 125
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.61 E-value=1.9e-07 Score=106.68 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCc--EEEecceeeEEEEeCC----eEEEEEeC------CC--CEEEcCEEEECCChhhHHhhccCC
Q 005832 387 GIAKSLAKGLADKGS--EILYKANVTKVILEQG----KAVGVRLS------DG--REFYAKTIISNATRWDTFGKLLKG 451 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv--~v~~~~~V~~I~~~~~----~v~gV~~~------~G--~~i~ad~VI~A~g~~~~~~~Ll~~ 451 (675)
.+.+.|.+.+++.|+ +|+++++|++|..+++ .+ .|++. +| +++.||.||.|.|.+..+.+.++.
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v-~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~ 219 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPV-TVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIGR 219 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCE-EEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCE-EEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhCC
Confidence 566778889999987 9999999999998752 34 36554 46 468999999999999887777753
No 126
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=98.61 E-value=2.3e-07 Score=96.59 Aligned_cols=41 Identities=41% Similarity=0.675 Sum_probs=36.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++|+++|..|++.|++|+|+|+. .+||.+.
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~ 47 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIA 47 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence 4589999999999999999999999999999998 6777543
No 127
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=98.59 E-value=3.8e-07 Score=94.60 Aligned_cols=42 Identities=33% Similarity=0.632 Sum_probs=36.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcc
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 196 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~ 196 (675)
+...+||+|||||++|+++|+.|++.|++|+|+|+. .+||.+
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~ 54 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLT 54 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTGGG
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CCCccc
Confidence 345689999999999999999999999999999994 566644
No 128
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.59 E-value=4e-07 Score=101.54 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHH-cCcEEEecceeeEEEEeC-CeEEEEEeCCCCEEEcCEEEECCChhhHH-hhccC
Q 005832 387 GIAKSLAKGLAD-KGSEILYKANVTKVILEQ-GKAVGVRLSDGREFYAKTIISNATRWDTF-GKLLK 450 (675)
Q Consensus 387 ~l~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~-~~v~gV~~~~G~~i~ad~VI~A~g~~~~~-~~Ll~ 450 (675)
.+.+.|.+.+++ .|++++.+ +|++|..++ +.+++|++.+|+++.||.||.|.|.+..+ .+.++
T Consensus 176 ~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg 241 (526)
T 2pyx_A 176 KFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQ 241 (526)
T ss_dssp HHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTC
T ss_pred HHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhC
Confidence 677788888888 89999999 599998864 45667888888889999999999987654 34443
No 129
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.59 E-value=3.7e-07 Score=100.40 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
...+.+.+.+.+++.|++|+++++|++|..+++++. |++.+|+++.+|.||+|+|..
T Consensus 201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~-v~~~~g~~i~aD~Vv~a~G~~ 257 (472)
T 3iwa_A 201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA-RVITDKRTLDADLVILAAGVS 257 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEE-EEEESSCEEECSEEEECSCEE
T ss_pred CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEE-EEEeCCCEEEcCEEEECCCCC
Confidence 457888899999999999999999999988777766 778899999999999999965
No 130
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.57 E-value=4.6e-07 Score=100.35 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..+++++ .|++.+|+++.+|.||+|+|...
T Consensus 223 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~aD~Vv~a~G~~p 279 (499)
T 1xdi_A 223 ADAALVLEESFAERGVRLFKNARAASVTRTGAGV-LVTMTDGRTVEGSHALMTIGSVP 279 (499)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSE-EEEETTSCEEEESEEEECCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEE-EEEECCCcEEEcCEEEECCCCCc
Confidence 4678888999999999999999999998776665 47788888999999999999764
No 131
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=98.57 E-value=4.5e-07 Score=92.64 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++||+|||||++||++|..|+++|++|+|+|+..
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 35 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGE 35 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4899999999999999999999999999999975
No 132
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.57 E-value=3.3e-07 Score=100.13 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++++++++|++|..++++...|++.+|+++.+|.||+|+|...
T Consensus 208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p 265 (450)
T 1ges_A 208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREP 265 (450)
T ss_dssp HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCc
Confidence 4677888899999999999999999998765443458888998999999999999653
No 133
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.57 E-value=4.3e-07 Score=99.57 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC-EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~-~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..++++ ..|++.+|+ ++.+|.||+|+|...
T Consensus 207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~G~~~i~~D~vv~a~G~~p 264 (463)
T 2r9z_A 207 PLLSATLAENMHAQGIETHLEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAP 264 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTE-EEEEETTCCEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCe-EEEEEeCCcEEEEcCEEEECCCCCc
Confidence 467778889999999999999999999877665 458889998 899999999999653
No 134
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.56 E-value=1.8e-07 Score=99.05 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 387 GIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 387 ~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.+.+.+.+++.|++++++++|++|..+++.+. |++.+| ++.+|.||+|+|.+.
T Consensus 89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g-~~~~d~vVlAtG~~~ 143 (369)
T 3d1c_A 89 TYAEYLQVVANHYELNIFENTVVTNISADDAYYT-IATTTE-TYHADYIFVATGDYN 143 (369)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEE-EEESSC-CEEEEEEEECCCSTT
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEE-EEeCCC-EEEeCEEEECCCCCC
Confidence 4445566777888999999999999988765543 777777 589999999999764
No 135
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.56 E-value=1e-06 Score=96.87 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC---CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..+++++. |++.++ +++.+|.||+|+|...
T Consensus 221 ~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~D~vi~a~G~~p 280 (476)
T 3lad_A 221 EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVT-VKFVDAEGEKSQAFDKLIVAVGRRP 280 (476)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEE-EEEESSSEEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEE-EEEEeCCCcEEEECCEEEEeeCCcc
Confidence 46788888999999999999999999988776654 666654 5799999999999654
No 136
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.55 E-value=3.8e-07 Score=100.88 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..++++...|++.+|+++.+|.||+|+|...
T Consensus 235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p 292 (495)
T 2wpf_A 235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIP 292 (495)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcc
Confidence 4677888999999999999999999998765443468889998999999999999653
No 137
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.52 E-value=1.9e-07 Score=103.30 Aligned_cols=49 Identities=20% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 394 ~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.++++|++|++++.|++|..++ ++.+|++.+|+++.+|.||+|+|...
T Consensus 265 ~~l~~~GV~v~~~~~v~~i~~~~-~v~~v~~~~g~~i~aD~Vv~a~G~~p 313 (493)
T 1y56_A 265 QELERWGIDYVHIPNVKRVEGNE-KVERVIDMNNHEYKVDALIFADGRRP 313 (493)
T ss_dssp HHHHHHTCEEEECSSEEEEECSS-SCCEEEETTCCEEECSEEEECCCEEE
T ss_pred HHHHhCCcEEEeCCeeEEEecCC-ceEEEEeCCCeEEEeCEEEECCCcCc
Confidence 66788899999999999997543 45668888999999999999999653
No 138
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.52 E-value=1.7e-06 Score=95.43 Aligned_cols=58 Identities=19% Similarity=0.187 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..++++...|++.+|+++.+|.||+|+|...
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p 288 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVP 288 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCc
Confidence 4677888999999999999999999998765443458889998999999999999654
No 139
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=98.50 E-value=3.5e-07 Score=95.35 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+.+++.|+++++++ |++|..+++.++ |++ +|+++.+|.||+|+|.+.
T Consensus 74 ~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~-v~~-~~~~~~~~~vv~A~G~~~ 124 (333)
T 1vdc_A 74 DKFRKQSERFGTTIFTET-VTKVDFSSKPFK-LFT-DSKAILADAVILAIGAVA 124 (333)
T ss_dssp HHHHHHHHHTTCEEECCC-CCEEECSSSSEE-EEC-SSEEEEEEEEEECCCEEE
T ss_pred HHHHHHHHHCCCEEEEeE-EEEEEEcCCEEE-EEE-CCcEEEcCEEEECCCCCc
Confidence 335556667899999987 999987766554 666 778899999999999764
No 140
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.50 E-value=3.2e-07 Score=100.29 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..+++++ .|++++| ++.+|.||+|+|...
T Consensus 189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v-~v~~~~g-~i~aD~Vv~A~G~~p 244 (452)
T 3oc4_A 189 KEMVAEVQKSLEKQAVIFHFEETVLGIEETANGI-VLETSEQ-EISCDSGIFALNLHP 244 (452)
T ss_dssp HHHHHHHHHHHHTTTEEEEETCCEEEEEECSSCE-EEEESSC-EEEESEEEECSCCBC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeE-EEEECCC-EEEeCEEEECcCCCC
Confidence 5788889999999999999999999998777777 6888777 899999999999653
No 141
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=5.9e-07 Score=93.93 Aligned_cols=41 Identities=39% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGS 195 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~ 195 (675)
+...+||+|||||++|+++|..|++.|++|+|+|+. .+||.
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~ 51 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGA 51 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCG
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCc
Confidence 345689999999999999999999999999999975 55653
No 142
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.8e-08 Score=100.87 Aligned_cols=42 Identities=38% Similarity=0.555 Sum_probs=38.4
Q ss_pred CCccEEEECCChhHHHHHHHHHH--cCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAV--KGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~--~g~~v~~~e~~~~~gg~~~ 197 (675)
.++||+||||||+||+||++|++ .|++|+||||.+.+||.+.
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~ 107 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence 46899999999999999999985 4999999999999999775
No 143
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.48 E-value=5.4e-07 Score=98.74 Aligned_cols=39 Identities=26% Similarity=0.139 Sum_probs=36.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-----CeEEEEecCCCCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKG-----ARVLVLEKYVIPGG 194 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g-----~~v~~~e~~~~~gg 194 (675)
..+||+|||||++||++|..|++.| ++|+|||+.+..|.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~ 72 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRW 72 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCS
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCC
Confidence 3579999999999999999999999 99999999998773
No 144
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.48 E-value=1.5e-07 Score=104.79 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005832 384 GVGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 384 G~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
-...+++.+.+.+++.|+++++++.|+++...++++. |.+.+++++.+|.|++|+|....
T Consensus 261 ~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~-v~~~~~~~~~~D~vLvAvGR~Pn 320 (542)
T 4b1b_A 261 FDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKIL-VEFSDKTSELYDTVLYAIGRKGD 320 (542)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEE-EEETTSCEEEESEEEECSCEEES
T ss_pred cchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEE-EEEcCCCeEEEEEEEEcccccCC
Confidence 3468899999999999999999999999998888765 88889989999999999996543
No 145
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=98.48 E-value=8.5e-07 Score=99.40 Aligned_cols=51 Identities=27% Similarity=0.360 Sum_probs=41.2
Q ss_pred HHHHcCcEEEecceeeEEEEe----CCeEEEEEeC--CCC--EEEcC-EEEECCChhhHH
Q 005832 395 GLADKGSEILYKANVTKVILE----QGKAVGVRLS--DGR--EFYAK-TIISNATRWDTF 445 (675)
Q Consensus 395 ~l~~~Gv~v~~~~~V~~I~~~----~~~v~gV~~~--~G~--~i~ad-~VI~A~g~~~~~ 445 (675)
.+.+.+.+|++++.|++|+.+ +++++||++. +|+ ++.|+ .||+|+|+..+-
T Consensus 236 ~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SP 295 (583)
T 3qvp_A 236 NYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSP 295 (583)
T ss_dssp TTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHH
T ss_pred hhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCH
Confidence 344568999999999999998 7899999974 565 46786 699999987653
No 146
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.47 E-value=9.1e-07 Score=97.16 Aligned_cols=42 Identities=38% Similarity=0.552 Sum_probs=38.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.++||+|||||++|+++|.+|++.|++|+|+|+.+.+||.+.
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~ 46 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL 46 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence 468999999999999999999999999999999988888654
No 147
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=98.46 E-value=7.1e-07 Score=91.99 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeC--CeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQ--GKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~--~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++++++++|+.|..+. +....|.+.+|+++.+|.||+|+|...
T Consensus 62 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~ 115 (310)
T 1fl2_A 62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW 115 (310)
T ss_dssp HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence 4455567799999999999997642 223457888888899999999999753
No 148
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=98.45 E-value=4.2e-07 Score=99.69 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=37.6
Q ss_pred ccEEEECCChhHHHHHHHHHH---cCCe---EEEEecCCCCCCcce
Q 005832 158 YDAIVIGSGIGGLVAATQLAV---KGAR---VLVLEKYVIPGGSSG 197 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~---~g~~---v~~~e~~~~~gg~~~ 197 (675)
+||+|||||++||+||..|++ .|++ |+|||+.+.+||...
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~ 48 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN 48 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGS
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEee
Confidence 699999999999999999999 9999 999999999998665
No 149
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=98.44 E-value=9e-07 Score=98.51 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeC--CeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQ--GKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~--~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++++.+++|++|..+. +....|++.+|+++.+|.||+|+|.+.
T Consensus 273 l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~ 326 (521)
T 1hyu_A 273 LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW 326 (521)
T ss_dssp HHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred HHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 4555677899999999999997542 223357888998999999999999753
No 150
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.42 E-value=6.7e-07 Score=97.72 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
...+.+.+.+.++++|++|+++++|++|..+++++..|.+ +|+++.+|.||+|+|...
T Consensus 190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p 247 (452)
T 2cdu_A 190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRP 247 (452)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEE
T ss_pred hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCC
Confidence 3578888999999999999999999999876777766765 788899999999999654
No 151
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.42 E-value=1e-06 Score=96.64 Aligned_cols=41 Identities=39% Similarity=0.571 Sum_probs=38.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
++||+|||||++|++||.+|++.|++|+|+|+.+.+||.+.
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 42 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL 42 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence 58999999999999999999999999999999988888654
No 152
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.39 E-value=2.1e-07 Score=100.37 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..++ ++.+|++.+|+++.+|.||+|+|...
T Consensus 185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~v~~~dg~~i~aD~Vv~a~G~~p 241 (410)
T 3ef6_A 185 RRIGAWLRGLLTELGVQVELGTGVVGFSGEG-QLEQVMASDGRSFVADSALICVGAEP 241 (410)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEECSS-SCCEEEETTSCEEECSEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEeccC-cEEEEEECCCCEEEcCEEEEeeCCee
Confidence 4677888899999999999999999997654 56679999999999999999999653
No 153
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.39 E-value=2.4e-06 Score=96.57 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
..+.+.+.+.+++.|++|+++++|++|..+++ +|++.+|+++.+|.||+|+|..
T Consensus 228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~---~v~~~~g~~i~~D~Vi~a~G~~ 281 (588)
T 3ics_A 228 YEMAAYVHEHMKNHDVELVFEDGVDALEENGA---VVRLKSGSVIQTDMLILAIGVQ 281 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT---EEEETTSCEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEEEEecCCC---EEEECCCCEEEcCEEEEccCCC
Confidence 57788899999999999999999999976555 3678899999999999999954
No 154
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.38 E-value=1.5e-06 Score=95.80 Aligned_cols=42 Identities=38% Similarity=0.651 Sum_probs=38.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.++||+|||||++|+++|..|++.|++|+|+|+.+.+||.+.
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~ 46 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL 46 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence 468999999999999999999999999999999888887543
No 155
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.36 E-value=1.3e-06 Score=95.61 Aligned_cols=40 Identities=38% Similarity=0.557 Sum_probs=36.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
++||+|||||++|++||.+|++.|++|+|+|+. ..||.+.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~ 42 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL 42 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence 489999999999999999999999999999998 6777553
No 156
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.35 E-value=1.4e-06 Score=93.81 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
..+.+.+.+.+++.|++++++++|++|.. + +|++++|+++.+|.||+++|..
T Consensus 218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~---~v~~~~g~~~~~D~vi~a~G~~ 269 (409)
T 3h8l_A 218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--H---EIVDEKGNTIPADITILLPPYT 269 (409)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEECS--S---EEEETTSCEEECSEEEEECCEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC--C---eEEECCCCEEeeeEEEECCCCC
Confidence 57888899999999999999999999853 3 2678999999999999998843
No 157
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=98.35 E-value=1e-06 Score=98.18 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=41.3
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCCC---CEEEcCEEEECCChhhHHhhcc
Q 005832 399 KGSEILYKANVTKVILEQGKAVGVRLSDG---REFYAKTIISNATRWDTFGKLL 449 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G---~~i~ad~VI~A~g~~~~~~~Ll 449 (675)
.+.+|.+++.|++|..+++++++|+..+. .++.|+.||+|+|+..+-+-|+
T Consensus 224 ~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl 277 (526)
T 3t37_A 224 KNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLM 277 (526)
T ss_dssp TTEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHH
T ss_pred CCeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeecceEEcccccCCcchhh
Confidence 46899999999999999999999887433 2578899999999887654443
No 158
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=98.30 E-value=3.9e-07 Score=94.22 Aligned_cols=41 Identities=32% Similarity=0.593 Sum_probs=36.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..|||+|||||+||++||.+|++.|++|+|+|+. .+||.+.
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~ 45 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA 45 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence 4699999999999999999999999999999986 5677654
No 159
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=98.30 E-value=2.1e-06 Score=96.07 Aligned_cols=37 Identities=41% Similarity=0.557 Sum_probs=34.0
Q ss_pred CccEEEECCChhHHHHHHHHHH-cCCeEEEEecCCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAV-KGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~-~g~~v~~~e~~~~~g 193 (675)
+||+||||||.+|+++|.+|++ .|++|+|||++....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~ 39 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDE 39 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCT
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCccc
Confidence 5899999999999999999999 699999999987653
No 160
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.29 E-value=4e-06 Score=95.98 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=33.5
Q ss_pred CccEEEECCChhHHHHHHHHHH-----cCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAV-----KGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~-----~g~~v~~~e~~~~~ 192 (675)
.+||+|||||++||++|..|++ .|++|+||||...+
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~ 48 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 48 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence 5899999999999999999999 99999999998654
No 161
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=98.27 E-value=4.9e-06 Score=92.14 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcC-cEEEecceeeEEEEeC--CeEEEEEeC--CC-----CEEEcCEEEECCChhhHH
Q 005832 388 IAKSLAKGLADKG-SEILYKANVTKVILEQ--GKAVGVRLS--DG-----REFYAKTIISNATRWDTF 445 (675)
Q Consensus 388 l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~--~~v~gV~~~--~G-----~~i~ad~VI~A~g~~~~~ 445 (675)
...++.+.++++| ++|++++.|++|+.++ +++++|++. +| .++.|+.||+|+|...+-
T Consensus 223 ~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~ 290 (504)
T 1n4w_A 223 LDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGST 290 (504)
T ss_dssp TTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCH
Confidence 3445556666675 9999999999999984 379999884 56 368899999999988553
No 162
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=98.24 E-value=5.1e-07 Score=93.18 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=34.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++.|||+|||||+|||+||.+|+++|++|+|+|+...
T Consensus 2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~ 38 (314)
T 4a5l_A 2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA 38 (314)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 4569999999999999999999999999999999753
No 163
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.20 E-value=4.6e-06 Score=93.75 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe-------------------CCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILE-------------------QGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~-------------------~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
..+.+.+.+.+++.|+++++++.|++|..+ ++++. +++.+|+++.+|.||+|+|..
T Consensus 192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~ 266 (565)
T 3ntd_A 192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTLSNGELLETDLLIMAIGVR 266 (565)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEETTSCEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEEcCCCEEEcCEEEECcCCc
Confidence 567788889999999999999999999873 55554 677899999999999999954
No 164
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=98.18 E-value=1.3e-05 Score=88.74 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcC-cEEEecceeeEEEEeC-C-eEEEEEeC--CC-----CEEEcCEEEECCChhhHH
Q 005832 388 IAKSLAKGLADKG-SEILYKANVTKVILEQ-G-KAVGVRLS--DG-----REFYAKTIISNATRWDTF 445 (675)
Q Consensus 388 l~~~L~~~l~~~G-v~v~~~~~V~~I~~~~-~-~v~gV~~~--~G-----~~i~ad~VI~A~g~~~~~ 445 (675)
...++.+.++++| ++|++++.|++|+.++ + ++++|++. +| .++.|+.||+|+|+..+-
T Consensus 228 ~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp 295 (507)
T 1coy_A 228 LDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTS 295 (507)
T ss_dssp TTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHH
T ss_pred hHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCH
Confidence 3445555556665 9999999999999986 4 79999874 56 268899999999988653
No 165
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.18 E-value=4.4e-06 Score=90.65 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+++.|++++++++|+.|..++.. |++.+|+++.+|.||+|+|...
T Consensus 70 ~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~p 114 (431)
T 1q1r_A 70 YAAQNIQLLGGTQVTAINRDRQQ---VILSDGRALDYDRLVLATGGRP 114 (431)
T ss_dssp HHHTTEEEECSCCEEEEETTTTE---EEETTSCEEECSEEEECCCEEE
T ss_pred HHhCCCEEEeCCEEEEEECCCCE---EEECCCCEEECCEEEEcCCCCc
Confidence 45679999999999999876553 6678888999999999999743
No 166
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.18 E-value=2.8e-06 Score=90.68 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=37.8
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 396 LADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+++.|++++++++|++|..+++. |++.+|+++.+|+||+|+|..
T Consensus 72 ~~~~~i~~~~~~~V~~id~~~~~---v~~~~g~~~~yd~lvlAtG~~ 115 (385)
T 3klj_A 72 YEKNNIKVITSEFATSIDPNNKL---VTLKSGEKIKYEKLIIASGSI 115 (385)
T ss_dssp HHHTTCEEECSCCEEEEETTTTE---EEETTSCEEECSEEEECCCEE
T ss_pred HHHCCCEEEeCCEEEEEECCCCE---EEECCCCEEECCEEEEecCCC
Confidence 45679999999999999877664 668899999999999999964
No 167
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=98.14 E-value=2.1e-05 Score=86.86 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC----EEEcCEEEECCCh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR----EFYAKTIISNATR 441 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~----~i~ad~VI~A~g~ 441 (675)
..+.+.+.+.++++|++|+++++|++|.. ++.+..+...||+ ++.+|.||+|+|.
T Consensus 272 ~~~~~~~~~~L~~~GV~v~~~~~v~~v~~-~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv 330 (502)
T 4g6h_A 272 KKLSSYAQSHLENTSIKVHLRTAVAKVEE-KQLLAKTKHEDGKITEETIPYGTLIWATGN 330 (502)
T ss_dssp HHHHHHHHHHHHHTTCEEETTEEEEEECS-SEEEEEEECTTSCEEEEEEECSEEEECCCE
T ss_pred HHHHHHHHHHHHhcceeeecCceEEEEeC-CceEEEEEecCcccceeeeccCEEEEccCC
Confidence 57888899999999999999999999842 2233345566774 6999999999994
No 168
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=98.13 E-value=1.5e-05 Score=88.97 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=42.9
Q ss_pred HHHHHHH-HHcCcEEEecceeeEEEEeC-CeEEEEEeCC---CC--EEEcC-EEEECCChhhH
Q 005832 390 KSLAKGL-ADKGSEILYKANVTKVILEQ-GKAVGVRLSD---GR--EFYAK-TIISNATRWDT 444 (675)
Q Consensus 390 ~~L~~~l-~~~Gv~v~~~~~V~~I~~~~-~~v~gV~~~~---G~--~i~ad-~VI~A~g~~~~ 444 (675)
.++.+.+ .+.|++|++++.|++|..++ ++++||++.+ |+ ++.|+ .||+|+|.+.+
T Consensus 212 ~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~s 274 (546)
T 2jbv_A 212 VSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDT 274 (546)
T ss_dssp HHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHH
T ss_pred HHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCC
Confidence 3333333 35689999999999999987 8899998744 54 68898 89999998654
No 169
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.03 E-value=2.5e-06 Score=94.24 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---C--CEEEcCEEEECCChhh
Q 005832 385 VGGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---G--REFYAKTIISNATRWD 443 (675)
Q Consensus 385 ~~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G--~~i~ad~VI~A~g~~~ 443 (675)
...+.+.+.+.+++.|++|+++++|++|..+++.+. |++.+ | +++.+|.||+|+|...
T Consensus 238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~i~~D~Vi~a~G~~p 300 (491)
T 3urh_A 238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAK-VTFEPVKGGEATTLDAEVVLIATGRKP 300 (491)
T ss_dssp CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEE-EEEEETTSCCCEEEEESEEEECCCCEE
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEE-EEEEecCCCceEEEEcCEEEEeeCCcc
Confidence 357888899999999999999999999998877654 55542 5 5799999999999643
No 170
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=98.02 E-value=4.1e-06 Score=96.95 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=40.0
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+||+|||||++||+||..|+++|++|+|+|+.+..||.+.
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~ 429 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN 429 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeee
Confidence 4568999999999999999999999999999999999999765
No 171
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.01 E-value=6.9e-05 Score=79.74 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|..+++.+ .|++.+|+++.+|.||+|+|...
T Consensus 193 l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~d~vv~a~G~~p 243 (384)
T 2v3a_A 193 VQAGLEGLGVRFHLGPVLASLKKAGEGL-EAHLSDGEVIPCDLVVSAVGLRP 243 (384)
T ss_dssp HHHHHHTTTCEEEESCCEEEEEEETTEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCEE-EEEECCCCEEECCEEEECcCCCc
Confidence 4455677899999999999998877654 58889999999999999999654
No 172
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=98.00 E-value=1.1e-05 Score=87.69 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhhH
Q 005832 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWDT 444 (675)
Q Consensus 393 ~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~~ 444 (675)
.+.+++.|++++. .+|++|..+++. |++.+|+++.+|.||+|+|....
T Consensus 66 ~~~~~~~gv~~~~-~~v~~id~~~~~---V~~~~g~~i~~d~lviAtG~~~~ 113 (437)
T 3sx6_A 66 RHYVERKGIHFIA-QSAEQIDAEAQN---ITLADGNTVHYDYLMIATGPKLA 113 (437)
T ss_dssp HHHHHTTTCEEEC-SCEEEEETTTTE---EEETTSCEEECSEEEECCCCEEC
T ss_pred HHHHHHCCCEEEE-eEEEEEEcCCCE---EEECCCCEEECCEEEECCCCCcC
Confidence 3445667999975 689999876653 66889989999999999997543
No 173
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=97.98 E-value=2.6e-06 Score=93.45 Aligned_cols=42 Identities=33% Similarity=0.377 Sum_probs=39.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
.++||+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus 3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~ 44 (466)
T 3l8k_A 3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCL 44 (466)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence 358999999999999999999999999999999999999765
No 174
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=97.97 E-value=6.9e-05 Score=81.15 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEE--eCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 392 LAKGLADKGSEILYKANVTKVIL--EQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~--~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.+++.|++|+++++|++|.. +++++.+|++.+|+++.+|.||+|+|..
T Consensus 197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~ 249 (431)
T 1q1r_A 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI 249 (431)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE
T ss_pred HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC
Confidence 34556777999999999999987 5677778999999999999999999964
No 175
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=97.95 E-value=8.1e-05 Score=81.17 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=41.4
Q ss_pred HHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 393 AKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 393 ~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
.+.++++|++|+++++|++|..+++++ .|++.+|+++.+|.||+|+|...
T Consensus 215 ~~~l~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~~D~vv~A~G~~p 264 (455)
T 2yqu_A 215 ERVFKKQGLTIRTGVRVTAVVPEAKGA-RVELEGGEVLEADRVLVAVGRRP 264 (455)
T ss_dssp HHHHHHHTCEEECSCCEEEEEEETTEE-EEEETTSCEEEESEEEECSCEEE
T ss_pred HHHHHHCCCEEEECCEEEEEEEeCCEE-EEEECCCeEEEcCEEEECcCCCc
Confidence 344566799999999999999877765 47777888999999999999654
No 176
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.94 E-value=2.1e-05 Score=86.48 Aligned_cols=36 Identities=33% Similarity=0.449 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~ 192 (675)
.+||+|||||++|++||.+|++. |.+|+|+|+.+..
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~ 73 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY 73 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence 36999999999999999999996 8999999998764
No 177
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=97.93 E-value=7.9e-06 Score=94.10 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=40.5
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
....+||+|||||++||+||+.|+++|++|+|+|+.+..||.+.
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~ 431 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVT 431 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEee
Confidence 34578999999999999999999999999999999999999765
No 178
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=97.87 E-value=1.1e-05 Score=87.36 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=34.9
Q ss_pred HHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 397 ADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 397 ~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
++.|++++.+ +|++|..+++. |++++|+++.+|++|+|+|+.
T Consensus 67 ~~~gv~~i~~-~v~~Id~~~~~---V~~~~g~~i~YD~LViAtG~~ 108 (430)
T 3hyw_A 67 PKFNIEFINE-KAESIDPDANT---VTTQSGKKIEYDYLVIATGPK 108 (430)
T ss_dssp GGGTEEEECS-CEEEEETTTTE---EEETTCCEEECSEEEECCCCE
T ss_pred HHCCcEEEEe-EEEEEECCCCE---EEECCCCEEECCEEEEeCCCC
Confidence 4568899876 59999877764 568999999999999999975
No 179
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=97.87 E-value=9e-06 Score=90.35 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeC----CeEE-EEEeCCCC---EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQ----GKAV-GVRLSDGR---EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~----~~v~-gV~~~~G~---~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|++++.|++|...+ +.+. .+...+|+ ++.+|.||+|+|...
T Consensus 250 ~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p 315 (519)
T 3qfa_A 250 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA 315 (519)
T ss_dssp HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence 5788888899999999999999988887532 3332 22334553 467999999999643
No 180
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.84 E-value=1e-05 Score=88.67 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..+++.+ .|++. +.++.+|.||+|+|.+.
T Consensus 216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~-~v~~~-~~~i~aD~Vv~a~G~~p 271 (467)
T 1zk7_A 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEF-VLTTT-HGELRADKLLVATGRTP 271 (467)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEE-EEEET-TEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE-EEEEC-CcEEEcCEEEECCCCCc
Confidence 5788889999999999999999999998776643 47776 45799999999999764
No 181
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.82 E-value=0.00018 Score=78.68 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-C--CC--EEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-D--GR--EFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~--G~--~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|..+++++. |++. + |+ ++.+|.||+|+|...
T Consensus 216 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~-v~~~~~~~g~~~~i~~D~vv~a~G~~p 271 (464)
T 2eq6_A 216 LRRALEKEGIRVRTKTKAVGYEKKKDGLH-VRLEPAEGGEGEEVVVDKVLVAVGRKP 271 (464)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEETTEEE-EEEEETTCCSCEEEEESEEEECSCEEE
T ss_pred HHHHHHhcCCEEEcCCEEEEEEEeCCEEE-EEEeecCCCceeEEEcCEEEECCCccc
Confidence 34556778999999999999988776653 6665 6 77 899999999999653
No 182
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.82 E-value=0.00012 Score=79.67 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=39.2
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|..+ +++..|.+ +|+++.+|.||+|+|...
T Consensus 197 l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p 246 (447)
T 1nhp_A 197 LTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRP 246 (447)
T ss_dssp HHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEE
T ss_pred HHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCC
Confidence 445567789999999999999765 45545666 567899999999999654
No 183
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.81 E-value=1e-05 Score=89.26 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC---CC--EEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|++++.|++|...++....|++.+ |+ ++.+|.||+|+|...
T Consensus 225 ~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p 287 (488)
T 3dgz_A 225 QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVP 287 (488)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence 57888899999999999999999999987443322355543 55 478999999999543
No 184
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.80 E-value=6.4e-06 Score=90.59 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEE--eCCeEEEEEeC-----CCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVIL--EQGKAVGVRLS-----DGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~--~~~~v~gV~~~-----~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|.. +++. ..|++. +++++.+|.||+|+|...
T Consensus 224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-~~v~~~~~~~g~~~~~~~D~vv~a~G~~p 287 (478)
T 1v59_A 224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNV-VEIVVEDTKTNKQENLEAEVLLVAVGRRP 287 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTE-EEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCe-EEEEEEEcCCCCceEEECCEEEECCCCCc
Confidence 56788889999999999999999999987 4443 456665 356799999999999654
No 185
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=97.80 E-value=2.8e-05 Score=85.93 Aligned_cols=41 Identities=20% Similarity=0.081 Sum_probs=31.5
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGS 195 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~ 195 (675)
..-+||||||+|++||++|+.|.+.|...+++|+....|+.
T Consensus 37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~ 77 (501)
T 4b63_A 37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQP 77 (501)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCC
T ss_pred CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCc
Confidence 34589999999999999999999988877777777766653
No 186
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=97.80 E-value=1.1e-05 Score=88.18 Aligned_cols=41 Identities=46% Similarity=0.591 Sum_probs=37.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
++||+|||||++|++||.+|++.|++|+|+|+.+.+||.+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 41 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL 41 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 37999999999999999999999999999999988888654
No 187
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.79 E-value=9.1e-06 Score=89.24 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEe-----CCCCEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRL-----SDGREFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~-----~~G~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..++++.+.|++ .+++++.+|.||+|+|...
T Consensus 220 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p 282 (474)
T 1zmd_A 220 MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 282 (474)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCc
Confidence 567888899999999999999999999877654223553 4567899999999999653
No 188
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.79 E-value=0.00023 Score=76.31 Aligned_cols=46 Identities=24% Similarity=0.367 Sum_probs=38.7
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
+.+.++++|++|+++++|++|. ++ .|++.+|+++.+|.||+|+|..
T Consensus 193 l~~~l~~~GV~i~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~ 238 (408)
T 2gqw_A 193 VARYHAAQGVDLRFERSVTGSV--DG---VVLLDDGTRIAADMVVVGIGVL 238 (408)
T ss_dssp HHHHHHHTTCEEEESCCEEEEE--TT---EEEETTSCEEECSEEEECSCEE
T ss_pred HHHHHHHcCcEEEeCCEEEEEE--CC---EEEECCCCEEEcCEEEECcCCC
Confidence 4455678899999999999998 44 4778899999999999999964
No 189
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=9.5e-06 Score=89.23 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCe-EEEEEeCCC-CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRLSDG-REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~-v~gV~~~~G-~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|+++++|++|..++++ +..|++.+| +++.+|.||+|+|...
T Consensus 226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p 285 (479)
T 2hqm_A 226 ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKS 285 (479)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCC
Confidence 467788889999999999999999999875433 446888899 7899999999999643
No 190
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.79 E-value=1.2e-05 Score=87.25 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+.+||+|||||++||++|+.|+++|++|+|+|+..
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45799999999999999999999999999999976
No 191
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.78 E-value=8.8e-06 Score=89.48 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCe-EEEEEeCC---C----CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGK-AVGVRLSD---G----REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~-v~gV~~~~---G----~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++.|++|++++.|++|..++++ ...|++.+ | +++.+|.||+|+|...
T Consensus 228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p 293 (478)
T 3dk9_A 228 SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP 293 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence 577888899999999999999999999876443 33477765 2 5789999999999543
No 192
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.76 E-value=5e-06 Score=78.64 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=66.7
Q ss_pred CCce-EEEEEeccc-chhhccCChhhHHHHHHHHHHHHHHHHHHhhC-CCCcCce------EEEEecChhHHHHHhcCCC
Q 005832 523 EGHH-ILHIFTICS-IEDWEGLAQKDYDAKKELVADEIINRLENKLF-PGLKQSI------AFREIGSPKTHRRYLARDQ 593 (675)
Q Consensus 523 ~G~~-~l~~~~~~~-~~~w~~~~~~~~~~~ke~~~~~il~~L~~~~~-P~l~~~i------~~~~v~tP~~~~~~~~~~~ 593 (675)
+|.. +|..++..+ ...|..++ ++++.+.++++|+ +++ |+. ..+ ...|...|.+ .
T Consensus 33 ~g~~~~L~~~~~g~~A~~~~~l~-------~~e~~~~~l~~L~-~~~g~~~-~~~~~~~~~~~~W~~dp~~--------~ 95 (181)
T 2e1m_C 33 TQGGVVLAAYSWSDDAARWDSFD-------DAERYGYALENLQ-SVHGRRI-EVFYTGAGQTQSWLRDPYA--------C 95 (181)
T ss_dssp CSCEEEEEEEEEHHHHHHHTTSC-------TTTTHHHHHHHHH-HHHCGGG-GGTEEEEEEEEESSSCTTT--------S
T ss_pred CCCCEEEEEEcCChHHHHHHcCC-------HHHHHHHHHHHHH-HHhCCCc-HhhccCcceecccCCCCCC--------C
Confidence 4553 455555432 33444443 3577888899998 777 665 322 2223233322 4
Q ss_pred CcccCCCCCCCCCCCCCCCCCCCCCcEEEeCCCccC-CCChhHHhhhHHHHHHHHHHHhCCcc
Q 005832 594 GTYGPMPRGTPKGLLGMPFNTTGINGLYCVGDSCFP-GQGVIAVAFSGVMCAHRVAADIGLEK 655 (675)
Q Consensus 594 G~yg~~p~~~~~~~~~~p~~~t~i~gLylaG~~~~p-G~Gv~gA~~SG~~aA~~Il~~~g~~~ 655 (675)
|+|...+.+..... .+..+.++++|||||+.|.. .+.|+||+.||++||++|++.++...
T Consensus 96 Ga~s~~~pg~~~~~--~~~l~~p~grl~FAGe~ts~~~g~~eGAl~SG~raA~~i~~~l~~~~ 156 (181)
T 2e1m_C 96 GEAAVYTPHQMTAF--HLDVVRPEGPVYFAGEHVSLKHAWIEGAVETAVRAAIAVNEAPVGDT 156 (181)
T ss_dssp SSEECCCTTHHHHH--HHHHHSCBTTEEECSGGGTTSTTSHHHHHHHHHHHHHHHHTCCC---
T ss_pred CcccCcCCCchHHH--HHHHhCCCCcEEEEEHHHcCCccCHHHHHHHHHHHHHHHHHHhccCC
Confidence 66654332211000 12223567899999999853 24699999999999999999887543
No 193
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.75 E-value=1.3e-05 Score=88.38 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC--CC--CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.+++. ++|+++++|++|..+++++. |++. +| +++.+|.||+|+|...
T Consensus 215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~-v~~~~~~G~~~~i~~D~Vi~a~G~~p 274 (492)
T 3ic9_A 215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVE-VIYFDKSGQKTTESFQYVLAATGRKA 274 (492)
T ss_dssp HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEE-EEEECTTCCEEEEEESEEEECSCCEE
T ss_pred HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEE-EEEEeCCCceEEEECCEEEEeeCCcc
Confidence 57788888888887 99999999999998777665 6664 67 5799999999999653
No 194
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.74 E-value=1.8e-05 Score=87.10 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCC-----EEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGR-----EFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~-----~i~ad~VI~A~g~~ 442 (675)
..+.+.+.+.++++|++|+++++|++|..++++...|++.+++ ++.+|.||+|+|..
T Consensus 227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~ 288 (483)
T 3dgh_A 227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRK 288 (483)
T ss_dssp HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccc
Confidence 5778888999999999999999999998754432347766554 78999999999954
No 195
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=97.72 E-value=2.1e-05 Score=89.18 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=37.7
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcc
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 196 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~ 196 (675)
...+||+|||||++|+++|+.|+++|++|+|+|+....||.+
T Consensus 44 ~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 44 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred cccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence 356899999999999999999999999999999999988744
No 196
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00025 Score=77.79 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 220 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV 220 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence 358999999999999999999999999999987653
No 197
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=97.71 E-value=2.4e-05 Score=83.29 Aligned_cols=35 Identities=34% Similarity=0.353 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~ 192 (675)
+||+|||||++||++|+.|+++ |++|+|+||.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4899999999999999999999 9999999998776
No 198
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=97.70 E-value=5.2e-05 Score=86.94 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=39.4
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
...+||+|||||++|++||..|+++|++|+|+|+.+..||...
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~ 413 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN 413 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence 3468999999999999999999999999999999999998654
No 199
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.70 E-value=0.0003 Score=76.57 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|..+++++. |++. +++++.+|.||+|+|...
T Consensus 217 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~~g~~~~~~~D~vv~a~G~~p 270 (455)
T 1ebd_A 217 IKKRLKKKGVEVVTNALAKGAEEREDGVT-VTYEANGETKTIDADYVLVTVGRRP 270 (455)
T ss_dssp HHHHHHHTTCEEEESEEEEEEEEETTEEE-EEEEETTEEEEEEESEEEECSCEEE
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCeEE-EEEEeCCceeEEEcCEEEECcCCCc
Confidence 34556778999999999999987776543 5554 456799999999999654
No 200
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.68 E-value=2.2e-05 Score=86.77 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCE-EEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGRE-FYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~-i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..++++...|++.+|++ +.+|.||+|+|...
T Consensus 217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p 275 (500)
T 1onf_A 217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSP 275 (500)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCC
T ss_pred hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCc
Confidence 57888899999999999999999999987643323578889988 99999999999654
No 201
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.67 E-value=1.7e-05 Score=86.58 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC--CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++++++++|++|.. +++ .|+..+| +++.+|.||+|+|...
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~v-~v~~~~G~~~~i~~D~vv~a~G~~p 268 (458)
T 1lvl_A 212 SELTAPVAESLKKLGIALHLGHSVEGYEN--GCL-LANDGKGGQLRLEADRVLVAVGRRP 268 (458)
T ss_dssp HHHHHHHHHHHHHHTCEEETTCEEEEEET--TEE-EEECSSSCCCEECCSCEEECCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEe--CCE-EEEECCCceEEEECCEEEECcCCCc
Confidence 56778888999999999999999999975 343 3554456 5899999999999654
No 202
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.67 E-value=0.0003 Score=77.62 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 211 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI 211 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 458999999999999999999999999999987753
No 203
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=97.64 E-value=0.00032 Score=76.90 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=33.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 219 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG 219 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccc
Confidence 4689999999999999999999999999999987543
No 204
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.63 E-value=0.00034 Score=77.03 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=39.7
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|.. ++++..|.+ +|+++.+|.||+|+|...
T Consensus 242 l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p 291 (490)
T 2bc0_A 242 MAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRP 291 (490)
T ss_dssp HHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEE
T ss_pred HHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCc
Confidence 44556788999999999999975 455545666 678899999999999653
No 205
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=97.63 E-value=2.1e-05 Score=86.02 Aligned_cols=40 Identities=45% Similarity=0.585 Sum_probs=36.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
++||+|||||++|++||..|++.|++|+|+|+.. .||.+.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~ 45 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL 45 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence 5899999999999999999999999999999987 777553
No 206
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.60 E-value=2.9e-05 Score=85.02 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC-CC--CEEEcCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLS-DG--REFYAKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~-~G--~~i~ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|++|+++++|++|..+++++. |++. +| +++.+|.||+|+|...
T Consensus 212 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~~g~~~~~~~D~vv~a~G~~p 271 (464)
T 2a8x_A 212 ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVT-VTVTKDGVAQELKAEKVLQAIGFAP 271 (464)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEE-EEEESSSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEE-EEEEcCCceEEEEcCEEEECCCCCc
Confidence 46778888999999999999999999987665543 6654 66 5799999999999643
No 207
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=97.58 E-value=0.00035 Score=76.72 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=40.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC----CCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD----GREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~----G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++|+++++|++|..+++.+ .|++.+ |+++.+|.||+|+|...
T Consensus 232 l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~~~~~g~~~~~D~vv~a~G~~p 286 (482)
T 1ojt_A 232 WQKQNEYRFDNIMVNTKTVAVEPKEDGV-YVTFEGANAPKEPQRYDAVLVAAGRAP 286 (482)
T ss_dssp HHHHHGGGEEEEECSCEEEEEEEETTEE-EEEEESSSCCSSCEEESCEEECCCEEE
T ss_pred HHHHHHhcCCEEEECCEEEEEEEcCCeE-EEEEeccCCCceEEEcCEEEECcCCCc
Confidence 3455677899999999999998776654 477766 77899999999999654
No 208
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=97.53 E-value=0.00061 Score=74.58 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 213 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV 213 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence 368999999999999999999999999999998754
No 209
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=97.52 E-value=7.8e-05 Score=78.03 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGS 195 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~ 195 (675)
+||+|||||++|+.||+.|+++|++|+|+|+....+..
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp 39 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTP 39 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCS
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCc
Confidence 69999999999999999999999999999998865543
No 210
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.50 E-value=0.0009 Score=73.63 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=43.0
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++|+++++|++|..+++++ .|++.+|+++.+|.||+|+|...
T Consensus 232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~-~v~l~dG~~i~aD~Vv~a~G~~p 282 (493)
T 1m6i_A 232 TMEKVRREGVKVMPNAIVQSVGVSSGKL-LIKLKDGRKVETDHIVAAVGLEP 282 (493)
T ss_dssp HHHHHHTTTCEEECSCCEEEEEEETTEE-EEEETTSCEEEESEEEECCCEEE
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCeE-EEEECCCCEEECCEEEECCCCCc
Confidence 3455678899999999999998777665 58899999999999999999653
No 211
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=97.49 E-value=0.00066 Score=74.46 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=39.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|..+ +++..|.+.+ .++.+|.||+|+|...
T Consensus 233 l~~~l~~~Gv~i~~~~~v~~i~~~-~~v~~v~~~~-~~i~~D~vi~a~G~~p 282 (480)
T 3cgb_A 233 IYKEADKHHIEILTNENVKAFKGN-ERVEAVETDK-GTYKADLVLVSVGVKP 282 (480)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEES-SBEEEEEETT-EEEECSEEEECSCEEE
T ss_pred HHHHHHHcCcEEEcCCEEEEEEcC-CcEEEEEECC-CEEEcCEEEECcCCCc
Confidence 445567789999999999999765 5566677654 5799999999999654
No 212
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=97.49 E-value=0.00075 Score=73.61 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 206 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRA 206 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 368999999999999999999999999999997653
No 213
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.48 E-value=0.00053 Score=74.73 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 206 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI 206 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence 358999999999999999999999999999998754
No 214
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=97.47 E-value=6.4e-05 Score=81.98 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=37.9
Q ss_pred CccEEEECCChhHHHHHHHHHH-c------CCeEEEEecCCCCCCcce
Q 005832 157 DYDAIVIGSGIGGLVAATQLAV-K------GARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~-~------g~~v~~~e~~~~~gg~~~ 197 (675)
.+||+|||||++|++||..|++ . |++|+|+|+.+.+||.++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~ 50 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR 50 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence 5799999999999999999999 7 999999999988998764
No 215
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=97.45 E-value=0.00094 Score=72.92 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=38.6
Q ss_pred HHHHH-HHcCcEEEecceeeEEEEeCCeEEEEEeC--CC--CEEEcCEEEECCChhh
Q 005832 392 LAKGL-ADKGSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l-~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VI~A~g~~~ 443 (675)
+.+.+ +++|++|+++++|++|..+++++ .|++. +| +++.+|.||+|+|...
T Consensus 221 l~~~l~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~i~~D~vv~a~G~~p 276 (468)
T 2qae_A 221 LVGALAKNEKMKFMTSTKVVGGTNNGDSV-SLEVEGKNGKRETVTCEALLVSVGRRP 276 (468)
T ss_dssp HHHHHHHHTCCEEECSCEEEEEEECSSSE-EEEEECC---EEEEEESEEEECSCEEE
T ss_pred HHHHHhhcCCcEEEeCCEEEEEEEcCCeE-EEEEEcCCCceEEEECCEEEECCCccc
Confidence 44556 77899999999999998766554 36655 66 5799999999999653
No 216
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=97.44 E-value=7.5e-05 Score=89.00 Aligned_cols=42 Identities=36% Similarity=0.561 Sum_probs=39.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++|++||.+|++.|++|+|+|+.+.+||.+.
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~ 168 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL 168 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence 358999999999999999999999999999999999999776
No 217
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=97.44 E-value=6.6e-05 Score=84.91 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEe------C---CeEE-EEEeCCCCEEE--cCEEEECCChhh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILE------Q---GKAV-GVRLSDGREFY--AKTIISNATRWD 443 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~------~---~~v~-gV~~~~G~~i~--ad~VI~A~g~~~ 443 (675)
..+.+.+.+.++++|+++++++.|++|... + +++. .+...+|+++. +|.||+|+|...
T Consensus 326 ~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p 395 (598)
T 2x8g_A 326 QQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREP 395 (598)
T ss_dssp HHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcc
Confidence 567788888999999999999988888642 2 3432 23346787665 999999999543
No 218
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=97.43 E-value=8.6e-05 Score=83.13 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHcCcEEEecceeeEEEEe--CCeEEEEEeC--CCC--EEEc-CEEEECCChhhHHh
Q 005832 397 ADKGSEILYKANVTKVILE--QGKAVGVRLS--DGR--EFYA-KTIISNATRWDTFG 446 (675)
Q Consensus 397 ~~~Gv~v~~~~~V~~I~~~--~~~v~gV~~~--~G~--~i~a-d~VI~A~g~~~~~~ 446 (675)
.+.+.+|++++.|++|..+ +++++||++. +|+ ++.| +.||+|+|...+-+
T Consensus 217 ~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~ 273 (577)
T 3q9t_A 217 NKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPK 273 (577)
T ss_dssp SCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHH
T ss_pred cCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChH
Confidence 3458999999999999998 7899999875 365 4677 56999999876533
No 219
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00012 Score=79.71 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~ 442 (675)
..+.+.+.+.+++. +++++++.|++|..++ ++..| ..+|+++.+|.||+|+|..
T Consensus 190 ~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v-~~~g~~i~~D~Vv~a~G~~ 243 (449)
T 3kd9_A 190 KEVTDILEEKLKKH-VNLRLQEITMKIEGEE-RVEKV-VTDAGEYKAELVILATGIK 243 (449)
T ss_dssp HHHHHHHHHHHTTT-SEEEESCCEEEEECSS-SCCEE-EETTEEEECSEEEECSCEE
T ss_pred HHHHHHHHHHHHhC-cEEEeCCeEEEEeccC-cEEEE-EeCCCEEECCEEEEeeCCc
Confidence 46778888888888 9999999999997554 44434 4467789999999999965
No 220
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=97.39 E-value=0.0012 Score=72.00 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 210 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTL 210 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 35899999999999999999999999999998764
No 221
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=97.38 E-value=0.0014 Score=71.98 Aligned_cols=36 Identities=33% Similarity=0.357 Sum_probs=32.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+..
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 233 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI 233 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence 468999999999999999999999999999987653
No 222
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.36 E-value=0.00072 Score=73.86 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=39.1
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CC--CEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G--~~i~ad~VI~A~g~~~ 443 (675)
+.+.+++.|++|+++++|++|..+++++ .|++. +| +++.+|.||+|+|...
T Consensus 224 l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p 279 (470)
T 1dxl_A 224 FQRSLEKQGMKFKLKTKVVGVDTSGDGV-KLTVEPSAGGEQTIIEADVVLVSAGRTP 279 (470)
T ss_dssp HHHHHHHSSCCEECSEEEEEEECSSSSE-EEEEEESSSCCCEEEEESEEECCCCEEE
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEcCCeE-EEEEEecCCCcceEEECCEEEECCCCCc
Confidence 3455678899999999999998765544 35554 45 5799999999999654
No 223
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=97.36 E-value=0.00012 Score=81.85 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=45.2
Q ss_pred HHHHHHHHHH-cCcEEEecceeeEEEEeCCeEEEEEeCC---CC--EE---EcCEEEECCChhhHH
Q 005832 389 AKSLAKGLAD-KGSEILYKANVTKVILEQGKAVGVRLSD---GR--EF---YAKTIISNATRWDTF 445 (675)
Q Consensus 389 ~~~L~~~l~~-~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~--~i---~ad~VI~A~g~~~~~ 445 (675)
..++.+.+.+ .|++|++++.|++|..++++++||++.+ |+ ++ .++.||+|+|.+...
T Consensus 198 ~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp 263 (546)
T 1kdg_A 198 VATYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTS 263 (546)
T ss_dssp HHTHHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHH
T ss_pred HHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCH
Confidence 3445555555 4899999999999999988999999865 64 33 789999999987653
No 224
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=97.35 E-value=0.00015 Score=79.21 Aligned_cols=42 Identities=31% Similarity=0.390 Sum_probs=37.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCCCCcce
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIPGGSSG 197 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~~gg~~~ 197 (675)
..+||+|||||++|+++|..|++.| ++|+|||+.+.+||..+
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~ 48 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR 48 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence 3579999999999999999999998 99999999999988653
No 225
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=97.34 E-value=0.0013 Score=72.05 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
..+++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 219 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS 219 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 357999999999999999999999999999974
No 226
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=97.32 E-value=0.00012 Score=79.18 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHHH--cCCeEEEEecCCCCCCc
Q 005832 158 YDAIVIGSGIGGLVAATQLAV--KGARVLVLEKYVIPGGS 195 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~--~g~~v~~~e~~~~~gg~ 195 (675)
+||+|||||++|+++|.+|++ .|++|+|+|+.+..++.
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~ 42 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFT 42 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECG
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcC
Confidence 689999999999999999999 88999999999876653
No 227
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.30 E-value=0.00057 Score=72.19 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|++|. .+ +|++++|+ +.+|.||+|+|...
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~--~~---~v~~~~g~-i~~D~vi~a~G~~p 234 (367)
T 1xhc_A 189 IKDMLEETGVKFFLNSELLEAN--EE---GVLTNSGF-IEGKVKICAIGIVP 234 (367)
T ss_dssp HHHHHHHTTEEEECSCCEEEEC--SS---EEEETTEE-EECSCEEEECCEEE
T ss_pred HHHHHHHCCCEEEcCCEEEEEE--ee---EEEECCCE-EEcCEEEECcCCCc
Confidence 3445677899999999999996 22 46788887 99999999999543
No 228
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=97.30 E-value=0.00018 Score=77.25 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCe--EEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGAR--VLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~--v~~~e~~~~ 191 (675)
.++||+|||||++|++||..|++.|++ |+|+|+.+.
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~ 43 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE 43 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence 468999999999999999999999984 999999764
No 229
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=97.28 E-value=0.0017 Score=71.33 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 209 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV 209 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence 468999999999999999999999999999998754
No 230
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=97.26 E-value=0.001 Score=68.72 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=36.8
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCC-----CCEEEcCEEEECCCh
Q 005832 399 KGSEILYKANVTKVILEQGKAVGVRLSD-----GREFYAKTIISNATR 441 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~-----G~~i~ad~VI~A~g~ 441 (675)
.|++|+++++|++|..+++++.+|++.+ ++++.+|.||+|+|.
T Consensus 222 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 269 (338)
T 3itj_A 222 EKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGH 269 (338)
T ss_dssp TTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCE
T ss_pred CCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCC
Confidence 3899999999999998887787788765 457999999999985
No 231
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=97.25 E-value=0.0002 Score=78.83 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=33.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcC---CeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG---ARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g---~~v~~~e~~~~~ 192 (675)
++||+|||||++|++||..|++.| ++|+|+|+.+..
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~ 73 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI 73 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence 589999999999999999999988 999999998754
No 232
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=97.22 E-value=0.0002 Score=76.13 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=30.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC--CeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~ 190 (675)
..+||+|||||++|++||..|++.| .+|+|+|++.
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~ 39 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD 39 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 3589999999999999999999999 4699999864
No 233
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=97.21 E-value=0.00023 Score=77.32 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPG 193 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~g 193 (675)
+||+|||||++|++||..|++. |++|+|+|+.+..|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~ 38 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS 38 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence 4899999999999999999998 99999999987653
No 234
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=97.21 E-value=0.0016 Score=68.24 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=39.3
Q ss_pred HHHcCcEEEecceeeEEEEeCCeEEEEEeC--CC--CEEEcCEEEECCChh
Q 005832 396 LADKGSEILYKANVTKVILEQGKAVGVRLS--DG--REFYAKTIISNATRW 442 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~--~G--~~i~ad~VI~A~g~~ 442 (675)
+++.|++|+++++|++|..+++++.+|++. +| +++.+|.||+|+|..
T Consensus 212 ~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~ 262 (360)
T 3ab1_A 212 RANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262 (360)
T ss_dssp HHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred hhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence 456789999999999999888887777774 77 478999999999953
No 235
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=97.19 E-value=0.00024 Score=78.29 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=34.9
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCCCC
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVIPG 193 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~~g 193 (675)
++..+||+|||||++|++||..|++. |.+|+|+|+.+..+
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~ 49 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP 49 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 34568999999999999999999887 88999999987653
No 236
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=97.19 E-value=0.00011 Score=81.90 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=41.6
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCC---eEEEEEeC--CCCE--E---EcCEEEECCChhhHH
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQG---KAVGVRLS--DGRE--F---YAKTIISNATRWDTF 445 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~---~v~gV~~~--~G~~--i---~ad~VI~A~g~~~~~ 445 (675)
+.+.+++.|++|++++.|++|..+++ +++||++. +|++ + .++.||+|+|.+.+-
T Consensus 200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp 263 (536)
T 1ju2_A 200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTP 263 (536)
T ss_dssp GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHH
T ss_pred hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCH
Confidence 33344567999999999999999863 89999874 4653 4 468999999987653
No 237
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=97.19 E-value=0.0054 Score=68.23 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus 184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 346899999999999999999999999999999875
No 238
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=97.18 E-value=0.003 Score=69.08 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 221 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 221 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence 46899999999999999999999999999998765
No 239
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=97.16 E-value=0.0017 Score=66.67 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=37.0
Q ss_pred HHcCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCChh
Q 005832 397 ADKGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATRW 442 (675)
Q Consensus 397 ~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~~ 442 (675)
++.|++|+++++|++|..+++++.+|++. +|+ ++.+|.||+|+|..
T Consensus 201 ~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (319)
T 3cty_A 201 KKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLI 251 (319)
T ss_dssp HHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEE
T ss_pred hcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCc
Confidence 35689999999999998776656677775 675 68999999999843
No 240
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=97.15 E-value=0.0029 Score=69.48 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+++|||+|..|+-+|..|++.|.+|+|+++..
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 218 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI 218 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence 3479999999999999999999999999999753
No 241
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=97.14 E-value=0.0025 Score=65.87 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=38.0
Q ss_pred HHHHHcCcEEEecceeeEEEEeCCeEEEEEeC---CC--CEEEcCEEEECCChh
Q 005832 394 KGLADKGSEILYKANVTKVILEQGKAVGVRLS---DG--REFYAKTIISNATRW 442 (675)
Q Consensus 394 ~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G--~~i~ad~VI~A~g~~ 442 (675)
+.+++.|+++++++.|++|..+ +++.+|++. +| +++.+|.||+|+|..
T Consensus 199 ~~l~~~gv~v~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 251 (335)
T 2zbw_A 199 KAHEEGRLEVLTPYELRRVEGD-ERVRWAVVFHNQTQEELALEVDAVLILAGYI 251 (335)
T ss_dssp HHHHTTSSEEETTEEEEEEEES-SSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred hccccCCeEEecCCcceeEccC-CCeeEEEEEECCCCceEEEecCEEEEeecCC
Confidence 3456679999999999999874 555567775 77 578999999999954
No 242
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=97.12 E-value=0.0082 Score=66.65 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus 177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ 212 (540)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 356899999999999999999999999999999865
No 243
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=97.12 E-value=0.0034 Score=64.04 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=36.1
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeC---CCC--EEEcCEEEECCCh
Q 005832 399 KGSEILYKANVTKVILEQGKAVGVRLS---DGR--EFYAKTIISNATR 441 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~---~G~--~i~ad~VI~A~g~ 441 (675)
.|++|+++++|++|..+++++.+|++. +|+ ++.+|.||+|+|.
T Consensus 192 ~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 239 (311)
T 2q0l_A 192 DKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGY 239 (311)
T ss_dssp TTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred CCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecC
Confidence 589999999999998876777677775 676 6899999999984
No 244
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=97.09 E-value=0.002 Score=69.73 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCChhh
Q 005832 392 LAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~~~ 443 (675)
+.+.++++|++++++++|+++. ++. |.+++|+++.+|.||+|+|...
T Consensus 194 ~~~~l~~~gV~i~~~~~v~~~~--~~~---v~~~~g~~~~~D~vl~a~G~~P 240 (437)
T 4eqs_A 194 ILDELDKREIPYRLNEEINAIN--GNE---ITFKSGKVEHYDMIIEGVGTHP 240 (437)
T ss_dssp HHHHHHHTTCCEEESCCEEEEE--TTE---EEETTSCEEECSEEEECCCEEE
T ss_pred HHHHhhccceEEEeccEEEEec--CCe---eeecCCeEEeeeeEEEEeceec
Confidence 4455678899999999999874 443 6689999999999999999543
No 245
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=97.07 E-value=0.00033 Score=74.01 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..||+|||||++|++||..|++.| +|+|+|+.+.
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~ 41 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV 41 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC
Confidence 469999999999999999999999 9999999875
No 246
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=97.03 E-value=0.0031 Score=64.31 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=35.1
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCC---CC--EEEcCEEEECCCh
Q 005832 399 KGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATR 441 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VI~A~g~ 441 (675)
.|++|+++++|++|..+++++.+|++.+ |+ ++.+|.||+|+|.
T Consensus 193 ~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 240 (310)
T 1fl2_A 193 KNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 240 (310)
T ss_dssp TTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred CCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCC
Confidence 4899999999999987767776777753 54 6899999999884
No 247
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=96.94 E-value=0.01 Score=65.96 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...+|+|||+|.+|+-+|..|++.|.+|+|++|.+.
T Consensus 190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 346899999999999999999999999999999874
No 248
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=96.94 E-value=0.005 Score=64.48 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=39.3
Q ss_pred HHHHHHHcC-cEEEecceeeEEEEeCCeEEEEEeCCCCEEE-cCEEEECCChhh
Q 005832 392 LAKGLADKG-SEILYKANVTKVILEQGKAVGVRLSDGREFY-AKTIISNATRWD 443 (675)
Q Consensus 392 L~~~l~~~G-v~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~-ad~VI~A~g~~~ 443 (675)
+.+.+++.| ++++++++|++|..+++.+ .|++.+|+++. +|.||+|+|...
T Consensus 220 l~~~l~~~g~v~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~~~d~vi~a~G~~~ 272 (369)
T 3d1c_A 220 LGNVIKQGARIEMNVHYTVKDIDFNNGQY-HISFDSGQSVHTPHEPILATGFDA 272 (369)
T ss_dssp HHHHHHTTCCEEEECSCCEEEEEEETTEE-EEEESSSCCEEESSCCEECCCBCG
T ss_pred HHHHHhhCCcEEEecCcEEEEEEecCCce-EEEecCCeEeccCCceEEeeccCC
Confidence 344556776 9999999999998766654 47888998775 599999999543
No 249
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=96.92 E-value=0.0006 Score=73.85 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~~ 192 (675)
++|||||||++|++||.+|++.| .+|+|+|+++..
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~ 37 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 37 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 36999999999999999999988 469999997643
No 250
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=96.80 E-value=0.013 Score=63.65 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHc--CCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~~ 191 (675)
...+|+|||+|.+|+-+|..|++. |.+|+++++...
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~ 263 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA 263 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 356899999999999999999998 899999998764
No 251
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=96.80 E-value=0.00087 Score=71.48 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCCh
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~ 441 (675)
+.+.+.+++.|++++++++|+.+..+++.. .|++.+|+++.+|.||+++|.
T Consensus 206 ~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~-~v~~~~g~~i~~D~vi~~~g~ 256 (401)
T 3vrd_B 206 RLYGFGTENALIEWHPGPDAAVVKTDTEAM-TVETSFGETFKAAVINLIPPQ 256 (401)
T ss_dssp HHSCTTSTTCSEEEECTTTTCEEEEETTTT-EEEETTSCEEECSEEEECCCE
T ss_pred HHHHHHHHhcCcEEEeCceEEEEEecccce-EEEcCCCcEEEeeEEEEecCc
Confidence 334445577899999999999998876554 388999999999999998774
No 252
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.0059 Score=66.13 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++.|.+|+|+++.+.+
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 183 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 183 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence 358999999999999999999999999999997643
No 253
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=96.78 E-value=0.012 Score=66.29 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 47999999999999999999999999999986
No 254
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=96.76 E-value=0.0079 Score=61.80 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 185 (325)
T 2q7v_A 152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD 185 (325)
T ss_dssp TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3579999999999999999999999999999764
No 255
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=96.68 E-value=0.0097 Score=60.69 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~ 187 (323)
T 3f8d_A 154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD 187 (323)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 3689999999999999999999999999998764
No 256
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=96.67 E-value=0.0072 Score=62.28 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~ 192 (333)
T 1vdc_A 159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 192 (333)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC
Confidence 4679999999999999999999999999999865
No 257
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=96.63 E-value=0.0034 Score=72.03 Aligned_cols=35 Identities=26% Similarity=0.137 Sum_probs=31.6
Q ss_pred CccEEEEC--CChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIG--SGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig--~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+||| +|..|+-+|..|++.|.+|+++++.+.
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~ 559 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ 559 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence 45799999 999999999999999999999998654
No 258
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=96.61 E-value=0.0012 Score=74.24 Aligned_cols=37 Identities=38% Similarity=0.593 Sum_probs=34.1
Q ss_pred CCccEEEECCChhHHHHHHHHHH-cCCeEEEEecCCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAV-KGARVLVLEKYVIP 192 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~-~g~~v~~~e~~~~~ 192 (675)
..+|+||||+|++|+++|.+|++ .|.+|+|+|++...
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 46999999999999999999999 79999999998654
No 259
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=96.57 E-value=0.023 Score=62.67 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
.+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~ 242 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 242 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence 46999999999999999999999999999974
No 260
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=96.56 E-value=0.0085 Score=66.25 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=35.3
Q ss_pred cCcEEEecceeeEEEEeCCeEEEEEeCC---CC--EEEcCEEEECCCh
Q 005832 399 KGSEILYKANVTKVILEQGKAVGVRLSD---GR--EFYAKTIISNATR 441 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~~~v~gV~~~~---G~--~i~ad~VI~A~g~ 441 (675)
.|+++++++.|++|..+++++++|++.+ |+ ++.+|.||+++|.
T Consensus 404 ~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~ 451 (521)
T 1hyu_A 404 KNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGL 451 (521)
T ss_dssp TTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred CCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCC
Confidence 4889999999999987777777787753 54 6899999999884
No 261
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.016 Score=62.94 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 206 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR 206 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence 46899999999999999999999999999998753
No 262
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=96.44 E-value=0.0071 Score=62.06 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~ 187 (332)
T 3lzw_A 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRD 187 (332)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecC
Confidence 4579999999999999999999999999998764
No 263
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=95.70 E-value=0.021 Score=67.97 Aligned_cols=46 Identities=13% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHcCcEEEecceeeEEEEe-CCeEEEEEeCC-------C--CEEEcCEEEECCChh
Q 005832 397 ADKGSEILYKANVTKVILE-QGKAVGVRLSD-------G--REFYAKTIISNATRW 442 (675)
Q Consensus 397 ~~~Gv~v~~~~~V~~I~~~-~~~v~gV~~~~-------G--~~i~ad~VI~A~g~~ 442 (675)
++.|++|++++.|++|..+ ++++.+|++.+ | +++.+|.||+++|..
T Consensus 327 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~ 382 (965)
T 2gag_A 327 VADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFN 382 (965)
T ss_dssp HHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEE
T ss_pred HhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcC
Confidence 4568999999999999874 56676777754 5 579999999999943
No 264
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.64 E-value=0.063 Score=64.27 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
.+|+|||||..|+-+|..+++.|. +|+|+++.+
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 366 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence 489999999999999999999996 899999854
No 265
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=95.46 E-value=0.016 Score=52.63 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 154 GADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 154 ~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.....+|+|||+|..|...|..|.+.|++|+++|++..
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 34457899999999999999999999999999998753
No 266
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=94.99 E-value=0.03 Score=49.91 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+.+|+|||.|..|...|..|.+.|++|+++|+++.
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~ 41 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT 41 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 345799999999999999999999999999999764
No 267
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=94.85 E-value=0.025 Score=49.88 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 268
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=94.59 E-value=0.032 Score=49.59 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..++|+|+|..|...|..|.++|++|+++|+++.
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~ 40 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE 40 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 5799999999999999999999999999998753
No 269
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=94.19 E-value=0.048 Score=46.33 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (675)
..+|+|+|+|..|...|..|.+.| ++|++++++.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 357999999999999999999999 9999999864
No 270
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=94.05 E-value=0.045 Score=57.83 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 182 (385)
T 3klj_A 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL 182 (385)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence 579999999999999999999999999999987653
No 271
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=94.02 E-value=0.39 Score=46.30 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|||||-.|...|..|.+.|.+|+|++...
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35689999999999999999999999999998754
No 272
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=93.90 E-value=0.044 Score=55.75 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 179 (312)
T 4gcm_A 146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE 179 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence 5799999999999999999999999999998764
No 273
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=93.74 E-value=0.073 Score=48.01 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+.+++|+|+|..|...|..|.+.|++|+++|+++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~ 36 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3579999999999999999999999999999863
No 274
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=93.34 E-value=0.1 Score=45.78 Aligned_cols=57 Identities=2% Similarity=-0.174 Sum_probs=44.8
Q ss_pred CEEEcCEEEECCChhhHHhhccCCCCCChHHHHHHHhhccCCcEEEEEEeeccccCCCC
Q 005832 428 REFYAKTIISNATRWDTFGKLLKGEQLPKEEENFQKLYVKAPSFLSIHMGVKAEVLPPD 486 (675)
Q Consensus 428 ~~i~ad~VI~A~g~~~~~~~Ll~~~~lp~~~~~~~~~~~~~~s~~~v~l~l~~~~~p~~ 486 (675)
+++.||+||+|+++..+ +.+.-.+.||..+.+++..+.++. ..++++.+++++|+.+
T Consensus 4 ~~~~Ad~VIvTvP~~vL-~~I~F~P~LP~~k~~Ai~~l~~g~-~~Kv~l~f~~~FW~~~ 60 (130)
T 2e1m_B 4 QTWTGDLAIVTIPFSSL-RFVKVTPPFSYKKRRAVIETHYDQ-ATKVLLEFSRRWWEFT 60 (130)
T ss_dssp EEEEESEEEECSCHHHH-TTSEEESCCCHHHHHHHHHCCEEC-EEEEEEEESSCGGGCC
T ss_pred eEEEcCEEEEcCCHHHH-hcCcCCCCCCHHHHHHHHhCCCcc-eeEEEEEECCCCCCCC
Confidence 36899999999998654 444434579999888888887665 6799999999988653
No 275
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.16 E-value=0.086 Score=49.10 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHc-CCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~ 190 (675)
..+|+|||.|..|...|..|.+. |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 45799999999999999999999 99999999875
No 276
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=93.15 E-value=0.055 Score=58.30 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGG 194 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg 194 (675)
.+|+|||.|.+|+++|..|+++|++|+++|.....-+
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~ 42 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG 42 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch
Confidence 5799999999999999999999999999998776544
No 277
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=93.14 E-value=0.065 Score=54.80 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||+|..|..-|..++..|++|+++|..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999865
No 278
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=92.93 E-value=0.1 Score=56.38 Aligned_cols=34 Identities=32% Similarity=0.286 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|.+|+++|..|+++|++|++.|+..
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 4689999999999999999999999999999865
No 279
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=92.92 E-value=0.077 Score=53.78 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|++.|.+|+|+|+..
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~ 185 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD 185 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence 4679999999999999999999999999999754
No 280
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=92.86 E-value=0.096 Score=52.72 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT 37 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 281
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=92.82 E-value=0.095 Score=46.21 Aligned_cols=33 Identities=27% Similarity=0.219 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|+|+|+|..|...|..|.+.|++|+++|+..
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 469999999999999999999999999999864
No 282
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=92.65 E-value=0.11 Score=55.90 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP 202 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence 358999999999999999999999999999998764
No 283
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=92.65 E-value=0.11 Score=52.92 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999864
No 284
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=92.65 E-value=0.15 Score=56.37 Aligned_cols=37 Identities=41% Similarity=0.708 Sum_probs=34.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+||||+|++|+++|.+|++.|++|+|+|++...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~ 42 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS 42 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4699999999999999999999999999999998753
No 285
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=92.08 E-value=0.099 Score=50.27 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|+|||+|..|...|..|.++|++|+++|+++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~ 34 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE 34 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 699999999999999999999999999998753
No 286
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=91.98 E-value=0.16 Score=55.09 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~ 201 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL 201 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence 57999999999999999999999999999998754
No 287
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=91.84 E-value=0.15 Score=52.34 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|.+.|..|++.|++|++++|..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 579999999999999999999999999999864
No 288
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=91.73 E-value=0.12 Score=52.87 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||+|..|.+.|..|+++|++|+++|+++.
T Consensus 7 ~kI~vIGaG~MG~~iA~~la~~G~~V~l~d~~~~ 40 (319)
T 2dpo_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred ceEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998753
No 289
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=91.53 E-value=0.14 Score=51.65 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+.+|.|||+|..|...|..|+ +|++|+++|+++
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence 4678999999999999999999 999999999865
No 290
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=91.47 E-value=0.18 Score=51.54 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|.|||+|..|.+.|..|++.|+ +|+++|+..
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence 4689999999999999999999998 999999875
No 291
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=91.42 E-value=0.22 Score=51.32 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|..|.+.|..|++.|+ +|+++|...
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence 4689999999999999999999998 999999875
No 292
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=91.34 E-value=0.2 Score=53.15 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=33.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l 179 (410)
T 3ef6_A 143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL 179 (410)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence 4689999999999999999999999999999987653
No 293
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=91.19 E-value=0.16 Score=51.81 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|.+.|..|++.|++|++++|..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 579999999999999999999999999999864
No 294
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=91.17 E-value=0.21 Score=50.84 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=33.1
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
....+|.|||.|..|...|..|++.|++|++++++..
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3446899999999999999999999999999998753
No 295
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=91.14 E-value=0.2 Score=50.19 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|.|||+|..|...|..|++.|++|++++++..
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 699999999999999999999999999998753
No 296
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=91.12 E-value=0.22 Score=47.61 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|.|||+|..|.+.|..|++.|++|+++++...
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 45799999999999999999999999999998764
No 297
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=91.01 E-value=0.17 Score=55.01 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.++|.|||+|..|+..|..|++.|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4689999999999999999999999999999864
No 298
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=90.88 E-value=0.18 Score=51.20 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999999864
No 299
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=90.81 E-value=0.24 Score=52.16 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999875
No 300
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=90.59 E-value=0.2 Score=54.03 Aligned_cols=33 Identities=39% Similarity=0.469 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|+..|..|++.|++|+++|++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 579999999999999999999999999999875
No 301
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=90.59 E-value=0.25 Score=53.03 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
-.+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 35799999999999999999999999999999865
No 302
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=90.46 E-value=0.29 Score=50.31 Aligned_cols=34 Identities=18% Similarity=0.010 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHH-HHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLV-AATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~-~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||.|.+|++ +|..|.++|++|++.|+...
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 57999999999997 78889999999999998753
No 303
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=90.43 E-value=0.26 Score=52.57 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=33.6
Q ss_pred CCCCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 153 RGADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 153 ~~~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
......++.|||.|..||..|..|+++|++|+.+|-++
T Consensus 17 ~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 17 RGSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp TTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 33456789999999999999999999999999999764
No 304
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=90.32 E-value=0.26 Score=53.33 Aligned_cols=35 Identities=26% Similarity=0.189 Sum_probs=32.6
Q ss_pred CccEEEECCChhHHHHHHHHHHc-CC-eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK-GA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~-g~-~v~~~e~~~~ 191 (675)
..+|.|||+|..|+..|..|+++ |+ +|+++|++..
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 35799999999999999999999 99 9999999876
No 305
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=90.27 E-value=0.25 Score=51.62 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=32.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+|+|||+|.+|+.+|..|...|.+|+++|+..
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999875
No 306
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=90.26 E-value=0.26 Score=50.38 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
.++|+|||+|..|.+.|..|++.|+ +|+++|++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 3589999999999999999999999 999999874
No 307
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=90.25 E-value=0.25 Score=51.26 Aligned_cols=33 Identities=36% Similarity=0.426 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 589999999999999999999999999999864
No 308
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=90.25 E-value=0.23 Score=50.36 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|..|...|..|++.|++|++++++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4589999999999999999999999999999865
No 309
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=90.19 E-value=0.26 Score=50.85 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
++|.|||+|..|.+.|..|++.|++|+++++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 57999999999999999999999999999974
No 310
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=90.02 E-value=0.23 Score=51.65 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.++|.|||+|..|.+.|..|++.|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999864
No 311
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=89.99 E-value=0.21 Score=50.49 Aligned_cols=35 Identities=23% Similarity=0.129 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|.|||.|..|...|..|++.|++|++++++..
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998764
No 312
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=89.90 E-value=0.29 Score=52.50 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..++.|||.|..|+..|..|+++|++|+++|+++.
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999999765
No 313
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=89.89 E-value=0.35 Score=49.60 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|+|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 3589999999999999999999998 999999864
No 314
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=89.80 E-value=0.29 Score=52.66 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 184 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERV 184 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSST
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCch
Confidence 357999999999999999999999999999998754
No 315
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=89.79 E-value=0.21 Score=50.41 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|-.|.+.|..|++.|++|++++|..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 579999999999999999999999999999874
No 316
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=89.78 E-value=0.29 Score=47.94 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 45789999999999999999999999999999875
No 317
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=89.72 E-value=0.3 Score=50.32 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+++|.|||+|..|...|..|++.|++|+++++..
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 5789999999999999999999999999999863
No 318
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=89.66 E-value=0.35 Score=51.34 Aligned_cols=37 Identities=38% Similarity=0.371 Sum_probs=33.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l 188 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL 188 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence 3579999999999999999999999999999988653
No 319
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=89.65 E-value=0.2 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...|+|||+|-.|+..|..|.+.|.+|+|++...
T Consensus 13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4679999999999999999999999999999754
No 320
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=89.62 E-value=0.27 Score=51.16 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....+|.|||.|..|...|..|++.|++|+++++..
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 345789999999999999999999999999999865
No 321
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=89.60 E-value=0.14 Score=55.43 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+.++|+|+|+|-.|...|..|...|++|+|+|+++.
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~ 37 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD 37 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 357899999999999999999999999999998754
No 322
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=89.52 E-value=0.25 Score=52.63 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...++|.|||.|..|+..|..|++ |++|+++|+++.
T Consensus 34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~ 69 (432)
T 3pid_A 34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA 69 (432)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence 344689999999999999999998 999999998753
No 323
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=89.50 E-value=0.36 Score=53.55 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 186 (565)
T 3ntd_A 152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV 186 (565)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence 57999999999999999999999999999998754
No 324
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=89.44 E-value=0.3 Score=52.83 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~ 70 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDP 70 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999875
No 325
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=89.41 E-value=0.33 Score=48.70 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++|.|||.|..|...|..|++.|++|++++++..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 4699999999999999999999999999998754
No 326
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=89.35 E-value=0.38 Score=49.47 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
.+|.|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE 48 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 589999999999999999999999 999999875
No 327
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=89.33 E-value=0.39 Score=50.74 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=33.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~ 178 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVM 178 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcch
Confidence 3579999999999999999999999999999987654
No 328
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=89.16 E-value=0.4 Score=48.74 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|..|...|..|++.|++|++++++.
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999865
No 329
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=89.09 E-value=0.34 Score=52.36 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~ 231 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 231 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence 46899999999999999999999999999998654
No 330
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=89.04 E-value=0.31 Score=49.31 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=32.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 180 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 180 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence 467999999999999999999999999999987643
No 331
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=89.02 E-value=2.8 Score=45.03 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=69.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC-------CCcceeEeeCCeEE-cc-ccccccCCCCCC--chHHH
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP-------GGSSGYYERDGYTF-DV-GSSVMFGFSDKG--NLNLI 225 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~-------gg~~~t~~~~g~~~-d~-G~~~~~g~~~~~--~~~~~ 225 (675)
...|+|||+|..|...|..|.+.|.+|+|++..... .|... +....+.- +. +...+.. .+.. ....+
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~-~~~~~~~~~~l~~~~lVi~-at~~~~~n~~i 89 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLT-LVEGPFDETLLDSCWLAIA-ATDDDTVNQRV 89 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCE-EEESSCCGGGGTTCSEEEE-CCSCHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEE-EEECCCCccccCCccEEEE-cCCCHHHHHHH
Confidence 467999999999999999999999999999975322 01121 11111111 11 2222221 1111 12345
Q ss_pred HHHHHHcCCceeEeeCCCeEEEEcC-----CCeEEEEcCC------HHHHHHHHHHhCCCcHHHHHHHHHH
Q 005832 226 TQALAAVGCEMEVIPDPTTVHFHLP-----NDLSVRVHRE------YSDFVAELTSKFPHEKEGVLAFYGE 285 (675)
Q Consensus 226 ~~ll~~lGl~~~~~~~~~~~~~~~~-----~g~~~~~~~~------~~~~~~~l~~~~p~~~~~~~~~~~~ 285 (675)
.+..+..|+.+....++....+.+| ++..+.+..+ .....+.+...+|.....+..+...
T Consensus 90 ~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~la~~ir~~ie~~l~~~~~~~~~~~~~ 160 (457)
T 1pjq_A 90 SDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPQHLGQVARYAGQ 160 (457)
T ss_dssp HHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEECCCCChHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6667778887655554433333321 2223333322 2245556777777655554444433
No 332
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=88.85 E-value=0.29 Score=52.50 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||+|..|+..|..|++.|++|+++|++.
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 333
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=88.83 E-value=0.33 Score=49.69 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus 155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~ 189 (335)
T 2a87_A 155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE 189 (335)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence 46899999999999999999999999999998754
No 334
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=88.74 E-value=0.36 Score=49.35 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|..|...|..|++.|++|++++++.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 4689999999999999999999999999999875
No 335
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=88.68 E-value=0.18 Score=44.94 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|...|..|++.|++|+++++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 3579999999999999999999999999999864
No 336
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=88.66 E-value=0.45 Score=52.54 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+++|||||..|+=.|..+++.|.+|+|+++...
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~ 257 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV 257 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence 35799999999999999999999999999998654
No 337
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=88.65 E-value=0.45 Score=51.15 Aligned_cols=36 Identities=28% Similarity=0.206 Sum_probs=33.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 182 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENL 182 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 367999999999999999999999999999998765
No 338
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=88.58 E-value=0.47 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (675)
..+|.|||+|..|.+.|+.|+..|+ +|+++|..
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 4689999999999999999999999 99999987
No 339
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=88.47 E-value=0.39 Score=48.78 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|-.|.+.|..|+ .|++|++++|..
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 57999999999999999999 999999999864
No 340
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=88.37 E-value=0.42 Score=48.55 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
+|+|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 69999999999999999999999 999999865
No 341
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=88.32 E-value=0.5 Score=51.13 Aligned_cols=36 Identities=36% Similarity=0.271 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 215 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF 215 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 458999999999999999999999999999998754
No 342
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=88.26 E-value=0.44 Score=50.42 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...|+|||+|.+|+.+|..+...|.+|+++|+..
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4689999999999999999999999999999864
No 343
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=88.24 E-value=0.46 Score=51.84 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHc---CCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK---GARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~---g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++. |.+|+|+|+.+.+
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~ 229 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI 229 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence 35899999999999999999999 9999999998764
No 344
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=88.17 E-value=0.53 Score=47.90 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|.|||+|..|...|..|++.|++|++++++..
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~ 64 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE 64 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 46799999999999999999999999999998653
No 345
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=88.12 E-value=0.39 Score=49.09 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=29.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||+|..|.+.|..|++.|++|+++ +..
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~ 51 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP 51 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence 467999999999999999999999999999 643
No 346
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=88.12 E-value=0.48 Score=45.35 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||+|..|...|..|++.|++|++++++.
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999864
No 347
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=88.10 E-value=0.47 Score=51.64 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHc---CCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK---GARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~---g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++. |.+|+|+|+.+.+
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~ 225 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 225 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence 35899999999999999999999 9999999998764
No 348
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=88.05 E-value=0.43 Score=46.91 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
.+|+|||+|-.|..+|..|++.|. +++|+|++..
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v 66 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV 66 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 579999999999999999999998 7999998753
No 349
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=88.02 E-value=0.5 Score=47.07 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...++|+|+|-+|.++|..|++.|.+|+|++|..
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3579999999999999999999999999998863
No 350
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=87.98 E-value=0.41 Score=50.90 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+..|||||.|-.|...|..|.+.|++|+++|++..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 45799999999999999999999999999998764
No 351
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=87.98 E-value=0.38 Score=48.30 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||.|..|...|..|++.|++|++++++..
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA 35 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 3699999999999999999999999999998754
No 352
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=87.83 E-value=0.52 Score=49.54 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+|+|||+|.+|+.+|..+...|.+|+++|+..
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999999864
No 353
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=87.72 E-value=0.42 Score=48.98 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~ 188 (675)
+|.|||+|..|...|..|++.|++|+++++
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence 589999999999999999999999999998
No 354
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=87.71 E-value=0.43 Score=48.26 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 4 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~d~~~ 36 (302)
T 2h78_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (302)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 579999999999999999999999999999864
No 355
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=87.55 E-value=0.42 Score=51.75 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~ 190 (675)
++|.|||.|..|+..|..|++. |++|+++|++.
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 5899999999999999999999 89999999864
No 356
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=87.51 E-value=0.45 Score=47.95 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4579999999999999999999999999999864
No 357
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=87.49 E-value=0.41 Score=51.99 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 39 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE 39 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 4799999999999999999999999999998753
No 358
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=87.44 E-value=0.4 Score=51.44 Aligned_cols=36 Identities=8% Similarity=-0.073 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCe-EEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~~~ 192 (675)
..+|+|||+|.+|+-.|..|++.|.+ |+|+++.+..
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~ 248 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD 248 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 46899999999999999999999999 9999987643
No 359
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=87.40 E-value=0.61 Score=46.29 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+++|||+|-+|.++|..|++.|.+|+|+.|...
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ 152 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR 152 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998754
No 360
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=87.38 E-value=0.59 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|.|||+|..|.+.|..|+..|+ +|+++|...
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~ 41 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE 41 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4689999999999999999999999 999999865
No 361
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=87.37 E-value=0.64 Score=46.22 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCCh
Q 005832 390 KSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNATR 441 (675)
Q Consensus 390 ~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g~ 441 (675)
+.+.+.+++.|++++. ++|++|..++ .|++.+|+++.+|.||+|+|.
T Consensus 178 ~~~~~~l~~~gv~i~~-~~v~~i~~~~----~v~~~~g~~~~~D~vi~a~G~ 224 (297)
T 3fbs_A 178 ADQHALLAARGVRVET-TRIREIAGHA----DVVLADGRSIALAGLFTQPKL 224 (297)
T ss_dssp HHHHHHHHHTTCEEEC-SCEEEEETTE----EEEETTSCEEEESEEEECCEE
T ss_pred HHHHHHHHHCCcEEEc-ceeeeeecCC----eEEeCCCCEEEEEEEEEccCc
Confidence 4467788899999985 8899986432 578899999999999999874
No 362
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=87.35 E-value=0.56 Score=50.59 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
...+|+|||+|..|+-+|..+.+.|. +|+++++.+.
T Consensus 263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR 299 (456)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence 45789999999999999999999998 5999988653
No 363
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=87.33 E-value=0.35 Score=50.45 Aligned_cols=32 Identities=34% Similarity=0.304 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||+|..|.+.|..|++.|++|+++++..
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999864
No 364
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=87.28 E-value=0.57 Score=52.27 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=33.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
..+++|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 223 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVM 223 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence 3579999999999999999999999999999987543
No 365
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=87.27 E-value=0.58 Score=48.74 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..|+|+|+|.+|+.+|..|+..|.+|+++++..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 689999999999999999999999999999864
No 366
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=87.12 E-value=0.58 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|+|||+|..|.++|+.|+..|. +|+++|...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999998 899999864
No 367
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=87.09 E-value=0.59 Score=47.54 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVK--GARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~ 190 (675)
+|+|||+|..|.+.|..|++. |++|+++|++.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 699999999999999999985 78999999875
No 368
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=87.08 E-value=0.55 Score=51.60 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
.+++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l 250 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK 250 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence 689999999999999999999999999999987643
No 369
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=87.01 E-value=0.51 Score=48.17 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (675)
..+|.|||.|..|...|..|++.| ++|+++++..
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 357999999999999999999999 9999999875
No 370
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=86.89 E-value=0.43 Score=48.46 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHHHc-----C-CeEEEEec
Q 005832 158 YDAIVIGSGIGGLVAATQLAVK-----G-ARVLVLEK 188 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~-----g-~~v~~~e~ 188 (675)
++|.|||+|..|...|..|++. | ++|+++++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 5899999999999999999999 9 99999987
No 371
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=86.84 E-value=0.59 Score=44.35 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=29.6
Q ss_pred cEEEEC-CChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.||| +|..|...|..|++.|++|++++++.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 589999 99999999999999999999999753
No 372
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=86.65 E-value=0.66 Score=47.19 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
.+|+|||+|..|...|..|+..|+ +|+++|...
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 579999999999999999999997 999999764
No 373
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=86.64 E-value=0.61 Score=48.61 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...+|+|+|+|.+|..+|..|...|. +|+++|+..
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G 222 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG 222 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 35689999999999999999999999 899999874
No 374
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=86.60 E-value=0.65 Score=47.57 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 4689999999999999999999997 899999754
No 375
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=86.60 E-value=0.54 Score=47.85 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (675)
..+|.|||.|..|...|..|++.|+ +|+++++.
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4689999999999999999999999 99999986
No 376
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=86.60 E-value=0.67 Score=50.49 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~ 217 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV 217 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 357999999999999999999999999999998764
No 377
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=86.38 E-value=0.69 Score=48.32 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...|+|+|+|..|+.+|..|+..|.+|+++|+..
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4679999999999999999999999999999864
No 378
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=86.33 E-value=0.54 Score=46.86 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...++|+|+|-+|.++|..|++.|.+|+|+.|..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999874
No 379
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=86.26 E-value=0.68 Score=50.02 Aligned_cols=36 Identities=31% Similarity=0.293 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHHHc-CCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVK-GARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~-g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-+|..|++. |.+|+++|+.+..
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~ 195 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI 195 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence 46899999999999999999999 9999999998754
No 380
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=86.20 E-value=0.42 Score=50.65 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||.|..|+..|..|++ |++|++++++.
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 69999999999999999999 99999999864
No 381
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=86.16 E-value=0.67 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (675)
...+|+|+|+|-+|..+|..|...|. +|+++|+.
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 35789999999999999999999998 79999987
No 382
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=86.02 E-value=0.86 Score=45.99 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.7
Q ss_pred ccEEEEC-CChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.||| .|..|.+.|..|++.|++|++++++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 4799999 99999999999999999999999865
No 383
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=85.91 E-value=0.69 Score=46.41 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~ 182 (315)
T 3r9u_A 147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF 182 (315)
T ss_dssp TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence 367999999999999999999999999999987654
No 384
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=85.89 E-value=0.31 Score=47.23 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
..+|.|||.|..|-+.|..|+++|++|+++++.
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence 458999999999999999999999999999885
No 385
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=85.85 E-value=0.69 Score=46.72 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=31.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...|+|||+|.+|.++|..|++.|. +|+|+.|..
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~ 175 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV 175 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4579999999999999999999998 899999864
No 386
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1
Probab=85.82 E-value=0.63 Score=47.54 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
+|.|||+|..|.+.|..|++.|+ +|+++|+..
T Consensus 2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~ 35 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 69999999999999999999999 999999864
No 387
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=85.80 E-value=0.57 Score=49.92 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+.-|||.|..|+..|..|+++|++|+++|+++.
T Consensus 11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~ 45 (431)
T 3ojo_A 11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ 45 (431)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 35789999999999999999999999999998754
No 388
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=85.76 E-value=0.4 Score=46.12 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEE-EecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLV-LEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~-~e~~~ 190 (675)
.+|.|||+|..|.+.|..|++.|++|++ ++++.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~ 57 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP 57 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 5799999999999999999999999998 88754
No 389
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=85.71 E-value=0.8 Score=46.67 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|.|||.|..|.+.|..|++.|+ +|+++|++.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 3689999999999999999999999 999999865
No 390
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=85.54 E-value=0.67 Score=46.12 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 33 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999998764
No 391
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=85.50 E-value=0.35 Score=50.99 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcC--CeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~~~ 192 (675)
.++|||||||++|++||.+|++.| .+|+|+|+++..
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~ 39 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETY 39 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCC
Confidence 357999999999999999999876 589999998753
No 392
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=85.48 E-value=0.72 Score=47.55 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|..|-+.|..|.+.|++|++++++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999865
No 393
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=85.33 E-value=0.83 Score=47.85 Aligned_cols=35 Identities=37% Similarity=0.485 Sum_probs=31.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|||+|..|+.+|..++..|.+|+++|+..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35689999999999999999999999999999764
No 394
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=85.33 E-value=0.72 Score=45.39 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHHHcC-CeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~ 190 (675)
+|.|||+|..|...|..|++.| ++|++++++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~ 34 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence 5899999999999999999999 9999999864
No 395
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=85.25 E-value=0.93 Score=46.29 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+|.|||+|..|.+.|..|+..|+ +|+++|...
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~ 39 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ 39 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence 3589999999999999999999988 999999875
No 396
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=85.20 E-value=0.9 Score=43.74 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+.|+|.|| |..|...|..|+++|++|+++.|...
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 56 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE 56 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence 3568999998 99999999999999999999998753
No 397
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=85.19 E-value=0.8 Score=49.58 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..+|.|||.|..|...|..|++.|++|++++++..
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~ 38 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS 38 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 36899999999999999999999999999998753
No 398
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=85.16 E-value=0.9 Score=46.48 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
...+|.|||+|..|.++|+.|+..|+ +|+++|...
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~ 56 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME 56 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence 35689999999999999999999998 899999754
No 399
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=85.15 E-value=0.68 Score=52.95 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 345 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE 345 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence 3579999999999999999999999999999875
No 400
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=85.13 E-value=0.94 Score=45.01 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+.|+|.|+|..|...+..|.++|++|+++.|...
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 5799999999999999999999999999998653
No 401
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=85.10 E-value=0.53 Score=50.22 Aligned_cols=51 Identities=18% Similarity=0.168 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCC----CCEEEcCEEEECCCh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSD----GREFYAKTIISNATR 441 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~----G~~i~ad~VI~A~g~ 441 (675)
..+.+.+.+.++++|++++++++|++|. +++ |++++ |+++.+|.||+++|.
T Consensus 200 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~--~~~---v~~~~~~~~g~~i~~D~vv~a~G~ 254 (430)
T 3h28_A 200 GASKRLVEDLFAERNIDWIANVAVKAIE--PDK---VIYEDLNGNTHEVPAKFTMFMPSF 254 (430)
T ss_dssp TTHHHHHHHHHHHTTCEEECSCEEEEEC--SSE---EEEECTTSCEEEEECSEEEEECEE
T ss_pred hHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCe---EEEEecCCCceEEeeeEEEECCCC
Confidence 3466778888999999999999999984 333 33444 678999999998774
No 402
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=85.10 E-value=0.92 Score=48.84 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~ 205 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI 205 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 468999999999999999999999999999998754
No 403
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=85.06 E-value=0.68 Score=50.22 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+.+|.|||.|..|...|..|+++|++|++++|..
T Consensus 14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~ 48 (480)
T 2zyd_A 14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR 48 (480)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 35689999999999999999999999999999864
No 404
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=85.04 E-value=0.93 Score=49.16 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
..+++|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 226 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI 226 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence 468999999999999999999999999999998754
No 405
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=84.97 E-value=0.65 Score=50.40 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHc--CCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVK--GARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~--g~~v~~~e~~~ 190 (675)
.+|.|||.|..|+..|..|++. |++|+++|++.
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 5899999999999999999998 79999999753
No 406
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=84.95 E-value=0.68 Score=46.70 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
+|+|||+|..|.+.|+.|+..|+ +|+++|+.+
T Consensus 2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~ 35 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE 35 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 69999999999999999999998 899999865
No 407
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=84.91 E-value=0.83 Score=49.73 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|..|...|..|+++|++|+++++..
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~ 43 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ 43 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999865
No 408
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=84.89 E-value=0.74 Score=47.05 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcC----CeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKG----ARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g----~~v~~~e~~~ 190 (675)
.++|.|||+|..|.+.|..|++.| ++|++++++.
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~ 59 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM 59 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence 457999999999999999999999 8999999864
No 409
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=84.86 E-value=0.95 Score=46.96 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
..|+|||||..|..+|+.+.+.|++|+++|.++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999998764
No 410
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=84.83 E-value=0.96 Score=42.75 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=29.4
Q ss_pred cEEEECC-ChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGS-GIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|+|+|| |..|...+..|+++|++|+++.|..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA 34 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence 5999995 9999999999999999999999864
No 411
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=84.63 E-value=0.81 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~ 33 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP 33 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 59999999999999999999999999999864
No 412
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Probab=84.62 E-value=0.77 Score=46.63 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcC--CeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKG--ARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g--~~v~~~e~~~ 190 (675)
.+|.|||+|-.|.+.|..|++.| ++|+++|+..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~ 36 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence 36999999999999999999999 7999999864
No 413
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=84.37 E-value=0.55 Score=51.78 Aligned_cols=37 Identities=35% Similarity=0.601 Sum_probs=34.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPG 193 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~g 193 (675)
.+||+||||||.+|+++|.+|++ |.+|+|||++...+
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~ 61 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT 61 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence 46999999999999999999999 99999999987654
No 414
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Probab=84.35 E-value=0.86 Score=46.14 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~~ 191 (675)
..+|.|||+|..|...|+.|+.+|+ +|+++|....
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~ 50 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG 50 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 3689999999999999999999999 9999998763
No 415
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=84.18 E-value=0.79 Score=46.30 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=27.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
.+|.+||-|..|...|..|+++||+|++++++..
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~ 39 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS 39 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998764
No 416
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=84.15 E-value=1.1 Score=44.69 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=30.7
Q ss_pred ccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|.|||+ |..|.+.|..|++.|++|+++++..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 57999999 9999999999999999999999864
No 417
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=84.10 E-value=0.61 Score=48.26 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcC-------CeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKG-------ARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g-------~~v~~~e~~~~ 191 (675)
++|.|||+|..|.+.|..|++.| ++|++++++..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 57999999999999999999999 99999998764
No 418
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=84.09 E-value=1.1 Score=45.78 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|+|||+|..|.+.|+.|+..|. +|+++|...
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4689999999999999999998885 799999864
No 419
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=84.07 E-value=0.93 Score=44.55 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHHHcC----CeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKG----ARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g----~~v~~~e~~~~ 191 (675)
++|.|||+|..|.+.|..|++.| ++|+++++...
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~ 42 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK 42 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence 57999999999999999999999 79999998764
No 420
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=84.05 E-value=0.88 Score=48.98 Aligned_cols=35 Identities=37% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|+|+|..|..+|..|+..|.+|++.|+.+
T Consensus 264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~ 298 (488)
T 3ond_A 264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298 (488)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35679999999999999999999999999999764
No 421
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=84.01 E-value=0.89 Score=45.68 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|...|..|++.|++|.+++++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~ 38 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP 38 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 479999999999999999999999999999864
No 422
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=83.95 E-value=0.91 Score=46.19 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
++|+|||+|..|.+.|+.|+..|+ +|+++|..+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 35 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 369999999999999999999987 899999865
No 423
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=83.86 E-value=0.55 Score=47.96 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=29.6
Q ss_pred CCCCCcEEEeCCCc---c--C--CCChhHHhhhHHHHHHHHHHHhC
Q 005832 614 TTGINGLYCVGDSC---F--P--GQGVIAVAFSGVMCAHRVAADIG 652 (675)
Q Consensus 614 ~t~i~gLylaG~~~---~--p--G~Gv~gA~~SG~~aA~~Il~~~g 652 (675)
.|.+||+|.+||.+ + + |..+.+++.||+.||+.|++.|.
T Consensus 280 ~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la 325 (326)
T 3fpz_A 280 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp CTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999864 1 1 23345667899999999999863
No 424
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=83.86 E-value=0.75 Score=48.11 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHHHcC-------CeEEEEecCCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKG-------ARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g-------~~v~~~e~~~~ 191 (675)
.+|.|||+|..|.+.|..|++.| ++|+++++...
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence 47999999999999999999999 99999998754
No 425
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=83.85 E-value=1.1 Score=45.52 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (675)
....++|+|+|-+|.++|..|++.|. +|+|+.|.
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence 34689999999999999999999998 89999987
No 426
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=83.73 E-value=1.1 Score=42.55 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=29.5
Q ss_pred cEEEECC-ChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGS-GIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|+|.|| |..|...+..|+++|++|+++.|..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 5999998 9999999999999999999998864
No 427
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=83.71 E-value=1.2 Score=45.69 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
...+|+|||+|..|.+.|+.|+.+|+ +++++|...
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~ 54 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE 54 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence 45789999999999999999999998 899999753
No 428
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=83.69 E-value=0.93 Score=45.00 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|+|.|+|..|...+..|.++|++|+++.|..
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 579999999999999999999999999999865
No 429
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=83.66 E-value=1.1 Score=49.90 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=33.3
Q ss_pred CCccEEEECCChhHHHHHHHHHHcC-CeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKG-ARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g-~~v~~~e~~~~ 191 (675)
.+||+||||||.||+++|.+|++.| .+|+|||++..
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 4699999999999999999999998 79999999865
No 430
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=83.52 E-value=0.98 Score=49.03 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||.|..|...|..|++.|++|+++++..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~ 35 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 431
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=83.48 E-value=1.2 Score=45.03 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|.|||+|..|..+|..|...|.+|+++++..
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~ 190 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS 190 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35689999999999999999999999999999864
No 432
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=83.45 E-value=1.2 Score=44.85 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|.|||.|..|..+|..|...|.+|+++++..
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 35689999999999999999999999999999864
No 433
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=83.35 E-value=1.1 Score=45.82 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|+|||+|..|.++|+.|+..|+ +++++|...
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 44 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 4689999999999999999999988 899999753
No 434
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=83.33 E-value=0.99 Score=44.07 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHHHcCC----eEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGA----RVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~----~v~~~e~~~ 190 (675)
.+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~ 39 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT 39 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence 479999999999999999999998 999999864
No 435
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=83.33 E-value=0.89 Score=43.33 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=30.9
Q ss_pred ccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++|+|+|| |..|...+..|.++|++|+++.|...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 39 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE 39 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence 57999995 99999999999999999999998753
No 436
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=83.32 E-value=0.82 Score=52.20 Aligned_cols=34 Identities=35% Similarity=0.320 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
-.+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~ 347 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 347 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence 3579999999999999999999999999999875
No 437
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=83.29 E-value=1.2 Score=44.57 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 4679999999999999999999998 699998864
No 438
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=83.23 E-value=1.1 Score=45.70 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|+|||+|..|.+.|+.|+..|. +|.++|...
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~ 41 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT 41 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999999885 899999753
No 439
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=83.15 E-value=1 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+++|||+|.+|.+.|..|.+.|++|++++|..
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~ 162 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK 162 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3579999999999999999999999999999874
No 440
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=83.12 E-value=1.1 Score=44.57 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~ 36 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 69999999999999999999998 899999764
No 441
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=83.11 E-value=1.4 Score=40.93 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=30.9
Q ss_pred ccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+.|+|+|| |..|...+..|.++|++|+++.|...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~ 38 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence 57999998 99999999999999999999998653
No 442
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=83.10 E-value=0.74 Score=45.98 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=31.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
...++|||+|-+|.++|..|++.|. +|+|+.|...
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~ 152 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS 152 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 4579999999999999999999998 8999998754
No 443
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=83.08 E-value=1.2 Score=43.75 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
+++|||+|-+|.+++..|++.|. +|+|++|..
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~ 142 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI 142 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 79999999999999999999998 899999864
No 444
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=83.08 E-value=1.2 Score=44.56 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...++|||+|-+|.++|..|++.|. +|+|+.|..
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~ 156 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP 156 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4689999999999999999999998 899999865
No 445
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=82.91 E-value=1.3 Score=44.12 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=30.7
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...++|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4689999999999999999999996 899998864
No 446
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=82.68 E-value=0.49 Score=45.79 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=30.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...++|+|+|..|...|..|.+.|+ |+++|+++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~ 42 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV 42 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence 4579999999999999999999999 999998753
No 447
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=82.65 E-value=0.96 Score=45.12 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+|.|||+|..|...|..|++ |++|++++++.
T Consensus 3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~ 33 (289)
T 2cvz_A 3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF 33 (289)
T ss_dssp CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 69999999999999999999 99999999864
No 448
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=82.59 E-value=1.4 Score=44.05 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=30.6
Q ss_pred ccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 158 YDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 158 ~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
++|+|.|| |..|-..+.+|.++|++|+++-|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 46999998 99999999999999999999988653
No 449
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=82.55 E-value=1.1 Score=45.74 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCCccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCCC
Q 005832 155 ADDYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVIP 192 (675)
Q Consensus 155 ~~~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~~ 192 (675)
.+...|+|.|| |..|...+..|.++|++|+++.+....
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~ 55 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG 55 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 44578999998 999999999999999999999987643
No 450
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=82.47 E-value=1.1 Score=45.39 Aligned_cols=34 Identities=32% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCccEEEECCC-hhHHHHHHHHHHcCCeEEEEecC
Q 005832 156 DDYDAIVIGSG-IGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g-~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...+++|||+| +.|..+|..|...|.+|+|+++.
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~ 210 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 210 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence 45789999999 67999999999999999999875
No 451
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=82.42 E-value=1.1 Score=48.64 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|...|..|++.|++|+++++..
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~ 34 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 369999999999999999999999999999864
No 452
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=82.41 E-value=1.9 Score=45.86 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCC--CEEEcCEEEECCChh
Q 005832 386 GGIAKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDG--REFYAKTIISNATRW 442 (675)
Q Consensus 386 ~~l~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G--~~i~ad~VI~A~g~~ 442 (675)
....+.+.+.++++|+++++++.|++|. +++++ ++..+| +++.+|.||+++|..
T Consensus 200 ~~~~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~-~~~~~g~~~~i~~d~vi~~~G~~ 255 (430)
T 3hyw_A 200 GASKRLVEDLFAERNIDWIANVAVKAIE--PDKVI-YEDLNGNTHEVPAKFTMFMPSFQ 255 (430)
T ss_dssp TTHHHHHHHHHHHTTCEEECSCEEEEEC--SSEEE-EECTTSCEEEEECSEEEEECEEE
T ss_pred HHHHHHHHHHHHhCCeEEEeCceEEEEe--CCceE-EEeeCCCceEeecceEEEeccCC
Confidence 4556667788899999999999999984 45543 444444 479999999998843
No 453
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=82.40 E-value=1.3 Score=44.16 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC---eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA---RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~---~v~~~e~~~ 190 (675)
..+|.|||+|..|.+.|..|++.|+ +|++++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 3579999999999999999999999 899999865
No 454
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=82.33 E-value=1.3 Score=44.28 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=30.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
...++|+|+|-+|.+.|..|++.|. +|+|+.|..
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 4679999999999999999999996 899999864
No 455
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=82.08 E-value=1 Score=44.13 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||.|..|...|..|++.|++|.+++++.
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~ 36 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL 36 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence 579999999999999999999999999999764
No 456
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=82.04 E-value=0.75 Score=48.60 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHHH-cCCeEEEEec
Q 005832 158 YDAIVIGSGIGGLVAATQLAV-KGARVLVLEK 188 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~-~g~~v~~~e~ 188 (675)
++|.|||+|..|.+.|..|++ .|++|+++++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~ 34 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTL 34 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeC
Confidence 479999999999999999998 5999999983
No 457
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=81.95 E-value=1 Score=44.44 Aligned_cols=33 Identities=30% Similarity=0.274 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCe-EEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGAR-VLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~-v~~~e~~~ 190 (675)
.+|.|||+|-.|...|..|++.|++ |.+++++.
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~ 44 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE 44 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 5799999999999999999999999 89999764
No 458
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=81.83 E-value=1.1 Score=46.88 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=34.6
Q ss_pred CCccEEEECC-ChhHHHHHHHHHHcCC---eEEEEecCC-CCCCc
Q 005832 156 DDYDAIVIGS-GIGGLVAATQLAVKGA---RVLVLEKYV-IPGGS 195 (675)
Q Consensus 156 ~~~~~~iig~-g~~g~~~a~~l~~~g~---~v~~~e~~~-~~gg~ 195 (675)
...+|+|||+ |.+|+.|+..+...|. .|+++|... .-||.
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~ 257 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP 257 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence 3578999999 9999999999999998 899999976 44554
No 459
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=81.71 E-value=1.3 Score=45.23 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=30.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
++.+|+|||+|..|.+.|+.|+..+. ++.++|...
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~ 40 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence 44789999999999999999999887 799999753
No 460
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=81.70 E-value=1.1 Score=43.96 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEec
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEK 188 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~ 188 (675)
+|.|||+|..|...|..|++.|++|+++++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~ 31 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE 31 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence 589999999999999999999999999866
No 461
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=81.69 E-value=1.2 Score=51.06 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=31.5
Q ss_pred CccEEEEC--CChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIG--SGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig--~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+||| +|..|+-+|..|++.|.+|+|+++.+
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~ 563 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 563 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence 46899999 99999999999999999999999876
No 462
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=81.65 E-value=1.5 Score=44.44 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~ 189 (675)
...++|+|+|-+|.++|..|++.|. +|+|+.|.
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt 181 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK 181 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4689999999999999999999998 79999987
No 463
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=81.65 E-value=0.97 Score=45.26 Aligned_cols=32 Identities=31% Similarity=0.252 Sum_probs=29.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
++|.|||+|..|...|..|++.|++|++++ +.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~ 35 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG 35 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence 479999999999999999999999999998 54
No 464
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=81.52 E-value=1.1 Score=50.43 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=38.5
Q ss_pred cCcEEEecceeeEEEEeC--CeEEEEEeC---CCC--EEEcCEEEECCChhhHH
Q 005832 399 KGSEILYKANVTKVILEQ--GKAVGVRLS---DGR--EFYAKTIISNATRWDTF 445 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~--~~v~gV~~~---~G~--~i~ad~VI~A~g~~~~~ 445 (675)
.|++|++++.|++|..++ +++++|++. +|+ ++.||.||+|+|.....
T Consensus 273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~ 326 (623)
T 3pl8_A 273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNT 326 (623)
T ss_dssp EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHH
T ss_pred CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCH
Confidence 489999999999999874 378899875 455 57899999999977553
No 465
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*
Probab=81.50 E-value=1.5 Score=43.81 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.7
Q ss_pred CccEEEEC-CChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIG-SGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig-~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...++|+| +|-+|.++|..|++.|.+|++++|..
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 35799999 99999999999999999999998863
No 466
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=81.42 E-value=1.1 Score=45.05 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...++|+|+|-+|.++|..|++.| +|+|++|..
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~ 160 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTV 160 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCH
Confidence 357999999999999999999999 999998863
No 467
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=81.25 E-value=1.5 Score=43.08 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v 63 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV 63 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 4679999999999999999999998 6999998653
No 468
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=81.18 E-value=1.5 Score=45.53 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...|+|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~ 205 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN 205 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999965
No 469
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=81.12 E-value=1.6 Score=49.82 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
-.+|.|||+|..|-..|..++..|++|+++|..+.
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~ 350 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK 350 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence 46899999999999999999999999999998753
No 470
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=80.96 E-value=1.2 Score=45.53 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=29.8
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|+|||+|..|+-+|..|++.| +|+++.+..
T Consensus 163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~ 195 (357)
T 4a9w_A 163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE 195 (357)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence 468999999999999999999998 799998864
No 471
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=80.93 E-value=1.7 Score=44.11 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=31.7
Q ss_pred CCCccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 155 ADDYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 155 ~~~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
...+.|+|.|| |..|...+..|+++|++|+++.|..
T Consensus 18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~ 54 (330)
T 2pzm_A 18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA 54 (330)
T ss_dssp TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34467999998 9999999999999999999999854
No 472
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=80.67 E-value=1.5 Score=47.41 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=31.3
Q ss_pred CccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||.|..|...|..|++.|++|+++++..
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~ 38 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT 38 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 3679999999999999999999999999999864
No 473
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=80.67 E-value=1.6 Score=43.08 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
+++|||+|-+|.+.|..|.+.|++|+++++..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~ 149 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP 149 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999999999999999999999999999874
No 474
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=80.64 E-value=1.4 Score=49.16 Aligned_cols=49 Identities=27% Similarity=0.332 Sum_probs=39.6
Q ss_pred HHHcCcEEEecceeeEEEEeC----CeEEEEEeC--CCC--EEEc-CEEEECCChhhH
Q 005832 396 LADKGSEILYKANVTKVILEQ----GKAVGVRLS--DGR--EFYA-KTIISNATRWDT 444 (675)
Q Consensus 396 l~~~Gv~v~~~~~V~~I~~~~----~~v~gV~~~--~G~--~i~a-d~VI~A~g~~~~ 444 (675)
..+.|++|++++.|++|+.++ ++++||++. +|+ ++.| +.||+|+|...+
T Consensus 241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~s 298 (587)
T 1gpe_A 241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAIS 298 (587)
T ss_dssp TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTH
T ss_pred hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCC
Confidence 345689999999999999874 489999874 565 5778 889999998654
No 475
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=80.61 E-value=1.7 Score=44.54 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=31.4
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|..+|.+|++.|. +++|+|.+..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V 69 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV 69 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence 4689999999999999999999998 5999998654
No 476
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=80.49 E-value=1.4 Score=44.32 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|..+|.+|++.|. +++|+|.+..
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V 71 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV 71 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 4689999999999999999999997 6999997653
No 477
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=80.36 E-value=1.6 Score=44.92 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
..|.|||.|..|.+.|..|++.|++|+++++..
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~ 49 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG 49 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence 469999999999999999999999999999864
No 478
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=80.32 E-value=1.6 Score=43.81 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=32.0
Q ss_pred CccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 157 DYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
...|+|.|| |..|...+..|.++|++|+++.|...
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 42 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV 42 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence 467999999 99999999999999999999998765
No 479
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=79.95 E-value=1.3 Score=48.22 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=30.6
Q ss_pred CccEEEECCChhHHH-HHHHHHHcCCeEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLV-AATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~-~a~~l~~~g~~v~~~e~~~ 190 (675)
..+|.|||-|-+|++ +|..|.++|++|++.|...
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~ 56 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP 56 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence 468999999999997 6999999999999999764
No 480
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=79.94 E-value=1.6 Score=47.17 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|||.|..|..+|..|...|.+|+++|+.+
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~ 307 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP 307 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35679999999999999999999999999999864
No 481
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=79.70 E-value=1.6 Score=46.07 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|||.|..|..+|..|...|.+|+++|+++
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp 253 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP 253 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 35689999999999999999999999999999764
No 482
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Probab=79.69 E-value=1.7 Score=43.15 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
..+++|||+|-+|.++|..|++.|. +|+|+.|..
T Consensus 119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~ 153 (271)
T 1npy_A 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 153 (271)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 3579999999999999999999997 799998863
No 483
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1
Probab=79.69 E-value=1.6 Score=46.05 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=31.5
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
....|+|||+|..|..+|..|...|. +|+++++..
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~ 201 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 201 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 35679999999999999999999998 899999864
No 484
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=79.43 E-value=1.8 Score=44.54 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=30.0
Q ss_pred CccEEEECC-ChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 157 DYDAIVIGS-GIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 157 ~~~~~iig~-g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
..+|+|||+ |..|.++|+.++..|. +|+++|...
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~ 44 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA 44 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 468999997 9999999999999985 799999754
No 485
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=78.73 E-value=2.1 Score=43.83 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=30.6
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCC--eEEEEecCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGA--RVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~--~v~~~e~~~ 190 (675)
++.+|+|||+|..|.+.|+.|+..+. ++.++|...
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~ 44 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence 34789999999999999999999886 799999753
No 486
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=78.51 E-value=2.3 Score=42.64 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCccEEEECC-ChhHHHHHHHHHHcCCeEEEEecC
Q 005832 156 DDYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...+++|||. |+.|..+|..|.+.|..|+++.+.
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~ 198 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG 198 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 4578999995 569999999999999999999874
No 487
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=78.31 E-value=2.3 Score=43.66 Aligned_cols=36 Identities=19% Similarity=0.082 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
....|.|||.|-.|...|..|+..|++|+++++...
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~ 184 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK 184 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence 456899999999999999999999999999998653
No 488
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=78.28 E-value=2.4 Score=42.52 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCccEEEECCC-hhHHHHHHHHHHcCCeEEEEecC
Q 005832 156 DDYDAIVIGSG-IGGLVAATQLAVKGARVLVLEKY 189 (675)
Q Consensus 156 ~~~~~~iig~g-~~g~~~a~~l~~~g~~v~~~e~~ 189 (675)
...+|+|||+| +.|..+|..|.+.|..|+++.+.
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 198 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 198 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence 45789999999 68999999999999999999754
No 489
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=78.19 E-value=1.8 Score=43.93 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=29.4
Q ss_pred cEEEECC-ChhHHHHHHHHHHcC--CeEEEEecCC
Q 005832 159 DAIVIGS-GIGGLVAATQLAVKG--ARVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~-g~~g~~~a~~l~~~g--~~v~~~e~~~ 190 (675)
+|+|||+ |..|.+.|..|+..| .+|+++|...
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~ 36 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 6999998 999999999999988 6899999876
No 490
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=78.16 E-value=2.5 Score=45.47 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=35.2
Q ss_pred cCcEEEecceeeEEEEeC-C-eEEEEEeC---------------CC--CEEEcCEEEECCChhh
Q 005832 399 KGSEILYKANVTKVILEQ-G-KAVGVRLS---------------DG--REFYAKTIISNATRWD 443 (675)
Q Consensus 399 ~Gv~v~~~~~V~~I~~~~-~-~v~gV~~~---------------~G--~~i~ad~VI~A~g~~~ 443 (675)
+|++|++++.+++|..++ + ++.+|++. +| +++.+|.||+|+|...
T Consensus 270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p 333 (460)
T 1cjc_A 270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKS 333 (460)
T ss_dssp EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEEC
T ss_pred ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCC
Confidence 899999999999997653 5 66666653 34 4789999999999543
No 491
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=78.02 E-value=1.6 Score=43.77 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCcEEEecceeeEEEEeCCeEEEEEeCCCCEEEcCEEEECCC
Q 005832 389 AKSLAKGLADKGSEILYKANVTKVILEQGKAVGVRLSDGREFYAKTIISNAT 440 (675)
Q Consensus 389 ~~~L~~~l~~~Gv~v~~~~~V~~I~~~~~~v~gV~~~~G~~i~ad~VI~A~g 440 (675)
.+.+.+.+++.|++++.++ |+.+..+++++.+|++++|+++.+|.||++++
T Consensus 183 ~~~~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g 233 (304)
T 4fk1_A 183 SQTIMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVPT 233 (304)
T ss_dssp CHHHHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECCE
T ss_pred hhhhhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeeec
Confidence 3456677888999998865 88888777788889999999999998887765
No 492
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=77.92 E-value=1.9 Score=43.57 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 158 YDAIVIGSGIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 158 ~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
.+|-+||=|..|...|..|.++||+|+++++..
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~ 36 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ 36 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 469999999999999999999999999999864
No 493
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=77.86 E-value=2.5 Score=42.94 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
....|+|.|| |..|...|..|+++|++|+++++...
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 40 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN 40 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 3457999995 99999999999999999999998654
No 494
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=77.82 E-value=1.8 Score=41.00 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=30.1
Q ss_pred cEEEEC-CChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 159 DAIVIG-SGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 159 ~~~iig-~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
+|+|.| +|..|...+..|+++|++|+++.|...
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~ 35 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE 35 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 589999 799999999999999999999998753
No 495
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=77.81 E-value=2.2 Score=46.95 Aligned_cols=42 Identities=29% Similarity=0.245 Sum_probs=37.3
Q ss_pred CCCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCCCCCcc
Q 005832 155 ADDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSS 196 (675)
Q Consensus 155 ~~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~~gg~~ 196 (675)
...+||+|||||++||+||+.|++.|++|+|+|+...++++.
T Consensus 105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~ 146 (549)
T 3nlc_A 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT 146 (549)
T ss_dssp TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc
Confidence 345899999999999999999999999999999998775543
No 496
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=77.79 E-value=1.8 Score=44.29 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=30.6
Q ss_pred CccEEEEC-CChhHHHHHHHHHHcC--CeEEEEecCCC
Q 005832 157 DYDAIVIG-SGIGGLVAATQLAVKG--ARVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig-~g~~g~~~a~~l~~~g--~~v~~~e~~~~ 191 (675)
..+|+||| +|..|.+.|..|+.+| .+|+++|....
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~ 45 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA 45 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 46899999 7999999999999998 78999997653
No 497
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=77.66 E-value=2.8 Score=42.52 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCccEEEECC-ChhHHHHHHHHHHcCCeEEEEecCC
Q 005832 156 DDYDAIVIGS-GIGGLVAATQLAVKGARVLVLEKYV 190 (675)
Q Consensus 156 ~~~~~~iig~-g~~g~~~a~~l~~~g~~v~~~e~~~ 190 (675)
....|+|.|| |..|...+..|+++|++|+++.|..
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~ 45 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA 45 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3467999998 9999999999999999999998864
No 498
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=77.64 E-value=2.9 Score=43.59 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHHHcCCeEEEEecCCC
Q 005832 156 DDYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVI 191 (675)
Q Consensus 156 ~~~~~~iig~g~~g~~~a~~l~~~g~~v~~~e~~~~ 191 (675)
....|.|||+|..|...|..+.+.|++|++++..+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 456899999999999999999999999999997654
No 499
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=77.64 E-value=1.9 Score=43.72 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCC-eEEEEecCC
Q 005832 159 DAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYV 190 (675)
Q Consensus 159 ~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~ 190 (675)
+|.|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~ 33 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP 33 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence 48999999999999999999888 699999864
No 500
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=77.40 E-value=2.2 Score=44.10 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.1
Q ss_pred CccEEEECCChhHHHHHHHHHHcCC-eEEEEecCCC
Q 005832 157 DYDAIVIGSGIGGLVAATQLAVKGA-RVLVLEKYVI 191 (675)
Q Consensus 157 ~~~~~iig~g~~g~~~a~~l~~~g~-~v~~~e~~~~ 191 (675)
..+|+|||+|-.|..+|.+|++.|. +++|+|.+..
T Consensus 118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V 153 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI 153 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence 4679999999999999999999998 6999997653
Done!