BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005833
         (675 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
          Length = 479

 Score = 32.3 bits (72), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFM 267
           D+T SR+   I+  +A +G +K  ++ HSMG  + + ++
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
 pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
          Length = 484

 Score = 32.3 bits (72), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFM 267
           D+T SR+   I+  +A +G +K  ++ HSMG  + + ++
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
 pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
          Length = 475

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFM 267
           D+T SR+   I+  +A +G +K  ++ HSMG  + + ++
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYV 146


>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
 pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
           Fragment
          Length = 475

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 229 DQTLSRIKSNIELMVATNGGNKAVIIPHSMGVLYFLHFM 267
           D+T SR+   I+  +A +G +K  ++ H+MG  + + ++
Sbjct: 108 DETFSRLDRVIDEALAESGADKVDLVGHAMGTFFLVRYV 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,039,399
Number of Sequences: 62578
Number of extensions: 990303
Number of successful extensions: 1929
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1921
Number of HSP's gapped (non-prelim): 8
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)