BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005834
(675 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 37/249 (14%)
Query: 161 FDSRKKVFQDVLEALKDDKLN----IIGVYGMGGVGKTTLVKQVAK--QVTEDKLFDKVA 214
F +RKK+ + + L KLN + +YGM G GK+ L + + + E V
Sbjct: 126 FVTRKKLVHAIQQKLW--KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 183
Query: 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDR-------ANRLCRV--LKNEERHLII 265
+ + D + KL +L ++ + ES R A RV L+ R L+I
Sbjct: 184 WVSIGKQ-DKSGLLMKL-QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 241
Query: 266 LDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEIQIDA-LS 324
LD++W + D+Q C I+LT+R + + +VM + + +++ L
Sbjct: 242 LDDVWDPWVL------------KAFDNQ--CQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 325 KEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQ 384
+E+ L + V +MK AH I+ C P+ + + L++ W Y LRQ
Sbjct: 288 REKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344
Query: 385 LRSSYAKEI 393
L++ K I
Sbjct: 345 LQNKQFKRI 353
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 37/249 (14%)
Query: 161 FDSRKKV---FQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK----- 212
F +RKK+ Q L LK + + ++GM G GK+ L A+ V + L +
Sbjct: 126 FVTRKKLVNAIQQKLSKLKGEP-GWVTIHGMAGCGKSVLA---AEAVRDHSLLEGCFPGG 181
Query: 213 ---VAMAEVTENPDHQKIQD---KLASDLGIKFELNESIFDRANRL-CRVLKNEERHLII 265
V++ + ++ K+Q+ +L D L +I + +RL +L+ R L+I
Sbjct: 182 VHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLI 241
Query: 266 LDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEIQID-ALS 324
LD++W D + + D +C I+LT+R + + +VM + + ++ +L
Sbjct: 242 LDDVW-----DSWVLKAFD---------SQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 287
Query: 325 KEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQ 384
KE+ L + V +MK + AH I+ C P+ + + L++ W+Y L+Q
Sbjct: 288 KEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344
Query: 385 LRSSYAKEI 393
L++ K I
Sbjct: 345 LQNKQFKRI 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 107/249 (42%), Gaps = 37/249 (14%)
Query: 161 FDSRKKVFQDVLEALKDDKLN----IIGVYGMGGVGKTTLVKQVAK--QVTEDKLFDKVA 214
F +RKK+ + + L KLN + +YGM G GK+ L + + + E V
Sbjct: 133 FVTRKKLVHAIQQKLW--KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 190
Query: 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDR-------ANRLCRV--LKNEERHLII 265
+ + D + KL +L ++ + ES R A RV L+ R L+I
Sbjct: 191 WVSIGKQ-DKSGLLMKL-QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 248
Query: 266 LDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEIQIDA-LS 324
LD++W + D+Q C I+LT+ + + +VM + + +++ L
Sbjct: 249 LDDVWDPWVL------------KAFDNQ--CQILLTTSDKSVTDSVMGPKHVVPVESGLG 294
Query: 325 KEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQ 384
+E+ L + V +MK AH I+ C P+ + + L++ W Y LRQ
Sbjct: 295 REKGLEILSLFV--NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 351
Query: 385 LRSSYAKEI 393
L++ K I
Sbjct: 352 LQNKQFKRI 360
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 115/249 (46%), Gaps = 37/249 (14%)
Query: 161 FDSRKKV---FQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK----- 212
F +RKK+ Q L LK + + ++GM G GK+ L A+ V + L +
Sbjct: 132 FVTRKKLVNAIQQKLSKLKGEP-GWVTIHGMAGCGKSVLA---AEAVRDHSLLEGCFPGG 187
Query: 213 ---VAMAEVTENPDHQKIQD---KLASDLGIKFELNESIFDRANRL-CRVLKNEERHLII 265
V++ + ++ K+Q+ +L D L +I + +RL +L+ R L+I
Sbjct: 188 VHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLI 247
Query: 266 LDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEIQID-ALS 324
LD++W D + + D +C I+LT+R + + +VM + + ++ +L
Sbjct: 248 LDDVW-----DSWVLKAFD---------SQCQILLTTRDKSVTDSVMGPKYVVPVESSLG 293
Query: 325 KEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQ 384
KE+ L + V +MK + AH I+ C P+ + + L++ W+Y L+Q
Sbjct: 294 KEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 350
Query: 385 LRSSYAKEI 393
L++ K I
Sbjct: 351 LQNKQFKRI 359
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 570 LRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVI-VGQLKKLEILSFRGSDIERL 628
L L G + LP+ + L NL+ L L + RL + +G +L+ F + + L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 629 PLEFGQLTRLQLL 641
P EFG L LQ L
Sbjct: 309 PWEFGNLCNLQFL 321
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 586 SLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQ 639
SL L NL+ L + +LK IV++G L KLE+L G++I G LTRL+
Sbjct: 123 SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT----GGLTRLK 172
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 571 RVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERLPL 630
R+ N GI PS+ L L L+ L+D + LK LEILS R + ++ + +
Sbjct: 96 RLKNLNGI-----PSAC-----LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVM 145
Query: 631 EFGQLTRLQLLDL 643
G L++L++LDL
Sbjct: 146 -LGFLSKLEVLDL 157
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 29/113 (25%)
Query: 573 LNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDI-VIVGQLKKLEILSFRG--------- 622
L +TGI SLP+S+ L NL++L + L + + L KLE L RG
Sbjct: 190 LEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 623 ----------------SDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQ 659
S++ LPL+ +LT+L+ LDL C L + P++I Q
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQ 299
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 559 ISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDI--VIVGQLKKLE 616
IS + F GL+ L+ T H S LPS L L L+ L L + +++ + L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Query: 617 ILSFRGSDIERLPLEFG---QLTRLQLLDLSN 645
LS +G + +RL L G L L+ LDLS+
Sbjct: 329 HLSIKG-NTKRLELGTGCLENLENLRELDLSH 359
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 560 SDHFFDGTEGLRVLNFTGIHFS----SLPSSLGRLINLQTLCLEYCRLKDI 606
S+ FDG L+ LN G HF +SL L L+ L L +C L I
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 608 IVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665
I L LE+L G+ + LP F +L L LDLS C +LE ++P S L+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQ 497
Query: 666 VFGMAASR 673
V MA+++
Sbjct: 498 VLNMASNQ 505
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 143 YRPAPKSTEYMQVKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAK 202
+RPAPK E + E ++ KV + +K K IG++G GVGKT L++++
Sbjct: 119 HRPAPKFEEL--ATEVEILETGIKVVDLLAPYIKGGK---IGLFGGAGVGKTVLIQELIH 173
Query: 203 QVTED 207
+ ++
Sbjct: 174 NIAQE 178
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 380 YVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGN-KEAKSLFLLCGLFSEGHAI 432
+ L++ YAKE++G K+ L LSY GN +E K++ LFSEG I
Sbjct: 323 HFLKKFSRKYAKEVEGFTKSAQ-ELLLSYPWYGNVRELKNVIERAVLFSEGKFI 375
>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
Length = 267
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 380 YVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGN-KEAKSLFLLCGLFSEGHAI 432
+ L++ YAKE++G K+ L LSY GN +E K++ LFSEG I
Sbjct: 203 HFLKKFSRKYAKEVEGFTKSAQ-ELLLSYPWYGNVRELKNVIERAVLFSEGKFI 255
>pdb|3M0E|A Chain A, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|B Chain B, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|C Chain C, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|D Chain D, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|E Chain E, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|F Chain F, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|G Chain G, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
Length = 266
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 380 YVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGN-KEAKSLFLLCGLFSEGHAI 432
+ L++ YAKE++G K+ L LSY GN +E K++ LFSEG I
Sbjct: 202 HFLKKFSRKYAKEVEGFTKSAQ-ELLLSYPWYGNVRELKNVIERAVLFSEGKFI 254
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 559 ISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKDIVIVGQ----LK 613
I ++ F G L +L F L + + L NL+ L L C L V+ G L
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129
Query: 614 KLEILSFRGSDIERL-PLEFG-QLTRLQLLDLS 644
LE+L R ++I+++ P F + R +LDL+
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 559 ISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKDIVIVGQ----LK 613
I ++ F G L +L F L + + L NL+ L L C L V+ G L
Sbjct: 70 IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129
Query: 614 KLEILSFRGSDIERL-PLEFG-QLTRLQLLDLS 644
LE+L R ++I+++ P F + R +LDL+
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 608 IVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665
I L LE+L G+ + LP F +L L LDLS C +LE ++P S L+
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQ 202
Query: 666 VFGMA 670
V M+
Sbjct: 203 VLNMS 207
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 608 IVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665
I L LE+L G+ + LP F +L L LDLS C +LE ++P S L+
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQ 521
Query: 666 VFGMA 670
V M+
Sbjct: 522 VLNMS 526
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 608 IVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665
I L LE+L G+ + LP F +L L LDLS C +LE ++P S L+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQ 497
Query: 666 VFGMA 670
V M+
Sbjct: 498 VLNMS 502
>pdb|3DLZ|A Chain A, Crystal Structure Of Human Haspin In Complex With Amp
pdb|3E7V|A Chain A, Crystal Structure Of Human Haspin With A
Pyrazolo-Pyrimidine Ligand
pdb|3F2N|A Chain A, Crystal Structure Of Human Haspin With An
Imidazo-Pyridazine Ligand
pdb|3FMD|A Chain A, Crystal Structure Of Human Haspin With An Isoquinoline
Ligand
pdb|3IQ7|A Chain A, Crystal Structure Of Human Haspin In Complex With
5-Iodotubercidin
Length = 357
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 98 NGAKKYCFKGLCPNLLSRYKLSXXXXXXXXXXXXLVGKGNFSSV--SYRPAPKSTEYMQV 155
NG+ + F+ + P ++ +LS +G + V SY P + +
Sbjct: 81 NGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPP-------LLL 133
Query: 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVG----KTTLVKQVAKQVTEDKLFD 211
K ++ ++S K D + KDD+L I+ + GG+ +T L + +L
Sbjct: 134 KAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTA 193
Query: 212 KVAMAEVTENPDHQKIQ 228
+A+AE + +H+ +
Sbjct: 194 SLAVAEASLRFEHRDLH 210
>pdb|2VUW|A Chain A, Structure Of Human Haspin Kinase Domain
Length = 336
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 98 NGAKKYCFKGLCPNLLSRYKLSXXXXXXXXXXXXLVGKGNFSSV--SYRPAPKSTEYMQV 155
NG+ + F+ + P ++ +LS +G + V SY P + +
Sbjct: 60 NGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPP-------LLL 112
Query: 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVG----KTTLVKQVAKQVTEDKLFD 211
K ++ ++S K D + KDD+L I+ + GG+ +T L + +L
Sbjct: 113 KAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQXRTKLSSLATAKSILHQLTA 172
Query: 212 KVAMAEVTENPDHQKIQ 228
+A+AE + +H+ +
Sbjct: 173 SLAVAEASLRFEHRDLH 189
>pdb|2WB8|A Chain A, Crystal Structure Of Haspin Kinase
Length = 352
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 13/137 (9%)
Query: 98 NGAKKYCFKGLCPNLLSRYKLSXXXXXXXXXXXXLVGKGNFSSV--SYRPAPKSTEYMQV 155
NG+ + F+ + P ++ +LS +G + V SY P + +
Sbjct: 76 NGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPP-------LLL 128
Query: 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVG----KTTLVKQVAKQVTEDKLFD 211
K ++ ++S K D + KDD+L I+ + GG+ +T L + +L
Sbjct: 129 KAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTA 188
Query: 212 KVAMAEVTENPDHQKIQ 228
+A+AE + +H+ +
Sbjct: 189 SLAVAEASLRFEHRDLH 205
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 590 LINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDL 643
L+NL+ L L C LKDI + L +LE L G+ ++ + P F LT L+ L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 301 TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVG 354
T+ DL+ + SQ EI LS+E+ALH ++++ + + F+P+ + + G
Sbjct: 354 TTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRV---EIYRTVFRPMRNVLSG 404
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 148 KSTEY----MQVKDYEAFDSRKKVFQDVLEALKDDKLNI-------IGVYGMGGVGKTTL 196
++TEY ++ KD +A +S K++ ++L D KLN+ I V G+ G GKTT
Sbjct: 63 ETTEYILERLEEKDGDALESLKEIILEILNF--DTKLNVPPEPPFVIMVVGVNGTGKTTS 120
Query: 197 VKQVAKQVTED 207
++AK ++
Sbjct: 121 CGKLAKMFVDE 131
>pdb|1QI7|A Chain A, The Crystal Structure At 2.0 A Of Saporin So6, A Ribosome
Inactivating Protein From Saponaria Officinalis
Length = 253
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
Query: 174 ALKDDKLNIIGVYGM--GGVGKTTLVKQVAKQVTEDKLFDKVAMA-----EVTENPDHQK 226
LK D L ++ M V + K LF + A E TE D+Q
Sbjct: 65 GLKRDNLYVVAYLAMDNTNVNRAYYFKSEITSAELTALFPEATTANQKALEYTE--DYQS 122
Query: 227 IQ--------DKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL 273
I+ DK +LG+ +L + + N+ RV+KNE R L+I + E+
Sbjct: 123 IEKNAQITQGDKSRKELGLGIDLLLTFMEAVNKKARVVKNEARFLLIAIQMTAEV 177
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVA--KQVTEDKL 209
VKDY +F R +V E + K +IG+ G G+GKTT VK +A ++ TE K+
Sbjct: 294 VKDYGSF--RLEV-----EPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVA--KQVTEDKL 209
VKDY +F +E + K +IG+ G G+GKTT VK +A ++ TE K+
Sbjct: 364 VKDYGSFKLE-------VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 590 LINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDL 643
L+NL+ L L C LKDI + L +LE L G+ ++ + P F LT L+ L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVA--KQVTEDKL 209
VKDY +F +E + K +IG+ G G+GKTT VK +A ++ TE K+
Sbjct: 350 VKDYGSFKLE-------VEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 143 YRPAPKSTEYMQVKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAK 202
+RPAP+ E + D E ++ KV + K K IG++G GVGKT L++++
Sbjct: 112 HRPAPEFEE-LSTAD-EILETGIKVIDLLAPYAKGGK---IGLFGGAGVGKTVLIQELIN 166
Query: 203 QVTED 207
V ++
Sbjct: 167 NVAQE 171
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 168 FQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK 208
FQ V++ + + IIG+ G G+GKTT + + ++T D+
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE 322
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 139 SSVSYRPAPKSTEYMQVKD------YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVG 192
S++ + + T + +KD Y+A+ + K+++LNI + G+ G G
Sbjct: 58 SNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTG 117
Query: 193 KTTLVKQVAKQVTE 206
KTT + ++A E
Sbjct: 118 KTTSLAKMANYYAE 131
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|B Chain B, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|C Chain C, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|D Chain D, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
Length = 648
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 171 VLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230
++E D + ++ V+ G TL + + T +++ ++ T+N H+ I D+
Sbjct: 400 LIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDE 459
Query: 231 LASDLGIKFELNESIF 246
L+ L KF +N S+F
Sbjct: 460 LSERLADKFFVNFSLF 475
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,262,011
Number of Sequences: 62578
Number of extensions: 728282
Number of successful extensions: 2313
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2279
Number of HSP's gapped (non-prelim): 64
length of query: 675
length of database: 14,973,337
effective HSP length: 105
effective length of query: 570
effective length of database: 8,402,647
effective search space: 4789508790
effective search space used: 4789508790
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)