Query 005834
Match_columns 675
No_of_seqs 454 out of 3419
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 14:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.2E-83 2E-87 716.4 40.8 593 39-645 23-651 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-51 5.6E-56 487.3 44.0 474 157-674 182-716 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.8E-45 1E-49 372.9 21.3 277 164-450 1-285 (287)
4 KOG0617 Ras suppressor protein 99.5 2.1E-15 4.5E-20 131.7 -3.8 148 519-672 32-183 (264)
5 PRK04841 transcriptional regul 99.4 8.6E-12 1.9E-16 148.3 24.3 295 158-496 13-332 (903)
6 TIGR03015 pepcterm_ATPase puta 99.3 4.5E-10 9.8E-15 113.4 23.1 186 177-370 40-242 (269)
7 PRK00411 cdc6 cell division co 99.3 1.1E-09 2.3E-14 117.3 25.3 293 158-474 29-356 (394)
8 KOG0444 Cytoskeletal regulator 99.3 4.7E-13 1E-17 138.7 -1.1 147 519-672 54-207 (1255)
9 COG2909 MalT ATP-dependent tra 99.3 3.8E-10 8.2E-15 122.7 20.5 298 156-499 16-341 (894)
10 PF01637 Arch_ATPase: Archaeal 99.3 2.4E-11 5.2E-16 119.9 10.8 201 161-365 1-233 (234)
11 PF05729 NACHT: NACHT domain 99.2 8.4E-11 1.8E-15 109.3 11.0 151 181-337 1-164 (166)
12 TIGR02928 orc1/cdc6 family rep 99.2 5.9E-09 1.3E-13 110.3 26.5 297 158-475 14-349 (365)
13 KOG0617 Ras suppressor protein 99.2 9.7E-13 2.1E-17 115.1 -2.0 134 533-672 24-160 (264)
14 PLN00113 leucine-rich repeat r 99.2 7.9E-11 1.7E-15 141.0 11.9 148 521-672 141-294 (968)
15 PLN00113 leucine-rich repeat r 99.1 1.7E-10 3.6E-15 138.3 12.2 148 519-672 92-246 (968)
16 TIGR00635 ruvB Holliday juncti 99.1 2.2E-08 4.8E-13 103.0 23.1 274 158-476 3-289 (305)
17 PRK00080 ruvB Holliday junctio 99.0 2.1E-08 4.6E-13 103.9 20.2 277 155-476 21-310 (328)
18 KOG0444 Cytoskeletal regulator 99.0 2.6E-11 5.6E-16 126.0 -2.3 150 520-675 222-375 (1255)
19 KOG0472 Leucine-rich repeat pr 99.0 7.3E-11 1.6E-15 116.9 -0.8 150 519-673 387-539 (565)
20 PF14580 LRR_9: Leucine-rich r 99.0 7.8E-10 1.7E-14 101.6 5.8 131 534-670 11-148 (175)
21 KOG4194 Membrane glycoprotein 98.9 2E-10 4.3E-15 118.9 1.3 149 520-672 269-426 (873)
22 PLN03210 Resistant to P. syrin 98.9 3.4E-09 7.4E-14 127.6 12.0 107 564-675 798-906 (1153)
23 PF14580 LRR_9: Leucine-rich r 98.9 2.5E-09 5.5E-14 98.3 5.5 124 519-646 18-150 (175)
24 COG3899 Predicted ATPase [Gene 98.9 1.7E-07 3.8E-12 107.9 21.3 308 161-497 2-387 (849)
25 PRK13342 recombination factor 98.8 1.1E-07 2.4E-12 101.7 16.9 181 156-370 9-200 (413)
26 KOG0472 Leucine-rich repeat pr 98.8 2.3E-10 5E-15 113.4 -4.1 132 520-657 183-317 (565)
27 KOG0618 Serine/threonine phosp 98.7 1.9E-09 4E-14 117.8 0.3 108 564-674 379-488 (1081)
28 KOG4194 Membrane glycoprotein 98.7 7.3E-09 1.6E-13 107.5 4.5 146 520-669 102-252 (873)
29 PRK15387 E3 ubiquitin-protein 98.7 4.2E-08 9.1E-13 110.2 10.1 138 520-673 302-456 (788)
30 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.4E-14 103.5 -1.1 130 519-653 283-415 (490)
31 PRK06893 DNA replication initi 98.7 2.5E-07 5.5E-12 90.4 14.0 153 178-366 37-203 (229)
32 PTZ00112 origin recognition co 98.7 2.9E-06 6.2E-11 93.8 22.4 175 158-338 754-951 (1164)
33 PRK15370 E3 ubiquitin-protein 98.7 4.3E-08 9.3E-13 110.7 8.1 137 520-673 199-357 (754)
34 PRK07003 DNA polymerase III su 98.7 1.7E-06 3.6E-11 95.1 19.6 188 155-368 12-223 (830)
35 PRK15370 E3 ubiquitin-protein 98.6 6.1E-08 1.3E-12 109.5 8.1 136 520-672 262-398 (754)
36 COG2256 MGS1 ATPase related to 98.6 7.2E-07 1.6E-11 89.8 14.6 225 155-414 20-266 (436)
37 KOG4658 Apoptotic ATPase [Sign 98.6 7.6E-08 1.7E-12 110.5 8.6 135 532-672 513-652 (889)
38 PF13173 AAA_14: AAA domain 98.6 6.6E-08 1.4E-12 85.3 6.1 121 180-328 2-127 (128)
39 PLN03150 hypothetical protein; 98.6 1E-07 2.3E-12 107.0 8.8 103 570-673 420-526 (623)
40 COG3903 Predicted ATPase [Gene 98.6 1.8E-07 3.9E-12 94.6 9.4 292 179-498 13-316 (414)
41 KOG0532 Leucine-rich repeat (L 98.6 5.2E-09 1.1E-13 108.5 -2.0 146 522-672 123-270 (722)
42 PRK04195 replication factor C 98.6 4.6E-06 1E-10 91.0 20.3 186 155-371 10-207 (482)
43 PRK05564 DNA polymerase III su 98.6 1.9E-06 4E-11 88.8 16.3 177 159-365 4-189 (313)
44 PRK15387 E3 ubiquitin-protein 98.6 3.3E-07 7.2E-12 103.1 11.3 32 519-552 241-272 (788)
45 PRK14961 DNA polymerase III su 98.5 3E-06 6.5E-11 88.9 17.6 180 155-364 12-218 (363)
46 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.6E-06 3.5E-11 85.0 14.7 171 163-368 21-203 (226)
47 PRK12323 DNA polymerase III su 98.5 1.2E-06 2.6E-11 95.0 14.3 182 155-366 12-225 (700)
48 PRK14949 DNA polymerase III su 98.5 1.2E-06 2.7E-11 98.0 14.9 186 155-366 12-220 (944)
49 PF13401 AAA_22: AAA domain; P 98.5 4.3E-07 9.3E-12 80.6 9.1 120 179-304 3-125 (131)
50 cd01128 rho_factor Transcripti 98.5 2.8E-07 6E-12 90.3 8.0 94 178-272 14-115 (249)
51 PRK06645 DNA polymerase III su 98.5 4.2E-06 9E-11 90.4 17.3 179 155-363 17-226 (507)
52 PRK12402 replication factor C 98.5 1.8E-06 3.9E-11 90.3 14.4 201 155-364 11-224 (337)
53 TIGR02903 spore_lon_C ATP-depe 98.5 4.1E-06 8.9E-11 93.4 16.5 205 156-369 151-398 (615)
54 PRK14963 DNA polymerase III su 98.4 4.4E-06 9.4E-11 90.6 16.2 197 155-363 10-214 (504)
55 PF05496 RuvB_N: Holliday junc 98.4 7E-06 1.5E-10 77.3 15.2 187 155-371 20-226 (233)
56 PLN03025 replication factor C 98.4 3.2E-06 7E-11 87.2 14.2 184 155-362 9-196 (319)
57 PTZ00202 tuzin; Provisional 98.4 3.7E-06 8.1E-11 86.3 13.7 164 154-336 257-434 (550)
58 PRK14957 DNA polymerase III su 98.4 6.1E-06 1.3E-10 89.7 16.2 188 155-368 12-223 (546)
59 KOG0532 Leucine-rich repeat (L 98.4 5.6E-08 1.2E-12 101.0 0.4 126 540-673 119-245 (722)
60 cd00009 AAA The AAA+ (ATPases 98.4 1.9E-06 4.2E-11 77.9 10.5 59 162-222 1-59 (151)
61 PRK00440 rfc replication facto 98.4 8.7E-06 1.9E-10 84.4 16.6 186 155-365 13-202 (319)
62 PF13191 AAA_16: AAA ATPase do 98.4 1.4E-06 2.9E-11 82.5 9.5 47 161-207 2-51 (185)
63 PRK14960 DNA polymerase III su 98.4 5.1E-06 1.1E-10 90.5 14.8 185 155-365 11-218 (702)
64 PRK14956 DNA polymerase III su 98.4 4.1E-06 8.9E-11 88.6 13.3 194 155-363 14-219 (484)
65 COG1474 CDC6 Cdc6-related prot 98.4 4.7E-05 1E-09 79.2 20.9 200 161-367 19-239 (366)
66 PRK09112 DNA polymerase III su 98.4 1.7E-05 3.7E-10 82.1 17.4 201 155-367 19-241 (351)
67 KOG0618 Serine/threonine phosp 98.4 5.8E-08 1.3E-12 106.4 -1.1 107 562-671 39-146 (1081)
68 PRK14962 DNA polymerase III su 98.3 1.1E-05 2.3E-10 86.9 16.0 190 155-370 10-223 (472)
69 PF13855 LRR_8: Leucine rich r 98.3 2.8E-07 6.1E-12 69.4 2.8 57 614-672 2-59 (61)
70 PF05621 TniB: Bacterial TniB 98.3 1.9E-05 4.1E-10 78.0 16.1 196 165-364 43-259 (302)
71 KOG1259 Nischarin, modulator o 98.3 1.4E-07 3.1E-12 90.3 1.3 124 542-673 284-410 (490)
72 cd00116 LRR_RI Leucine-rich re 98.3 3.5E-07 7.5E-12 94.9 4.1 149 522-673 110-289 (319)
73 PRK07471 DNA polymerase III su 98.3 1.8E-05 3.8E-10 82.5 16.6 198 156-366 16-238 (365)
74 PRK09376 rho transcription ter 98.3 1.9E-06 4.2E-11 88.0 8.9 99 171-271 159-267 (416)
75 PRK09087 hypothetical protein; 98.3 8.8E-06 1.9E-10 79.0 13.0 145 179-367 43-196 (226)
76 PRK13341 recombination factor 98.3 7.2E-06 1.6E-10 92.4 14.1 172 155-360 24-211 (725)
77 PRK14951 DNA polymerase III su 98.3 1.5E-05 3.3E-10 87.8 16.1 182 155-366 12-225 (618)
78 PRK07994 DNA polymerase III su 98.3 8.5E-06 1.8E-10 89.9 14.1 197 155-366 12-220 (647)
79 TIGR02397 dnaX_nterm DNA polym 98.3 2.6E-05 5.7E-10 82.2 17.5 186 155-367 10-219 (355)
80 PRK14964 DNA polymerase III su 98.3 1.9E-05 4.1E-10 84.6 16.2 183 155-363 9-214 (491)
81 TIGR00678 holB DNA polymerase 98.3 2.1E-05 4.6E-10 74.5 15.0 160 170-362 3-187 (188)
82 PRK08727 hypothetical protein; 98.3 1.3E-05 2.8E-10 78.6 13.8 172 158-363 18-201 (233)
83 PF13855 LRR_8: Leucine rich r 98.3 7.1E-07 1.5E-11 67.2 3.9 55 569-623 2-59 (61)
84 PRK05896 DNA polymerase III su 98.3 1.4E-05 3.1E-10 87.0 15.1 199 155-368 12-223 (605)
85 PRK07940 DNA polymerase III su 98.3 3E-05 6.4E-10 81.5 16.5 173 158-366 4-213 (394)
86 PRK14955 DNA polymerase III su 98.2 1.9E-05 4.1E-10 84.0 15.0 203 155-365 12-227 (397)
87 KOG3207 Beta-tubulin folding c 98.2 1.8E-07 3.8E-12 94.5 -0.4 152 520-673 121-312 (505)
88 PRK14958 DNA polymerase III su 98.2 1.5E-05 3.2E-10 86.8 14.1 185 155-365 12-219 (509)
89 PLN03150 hypothetical protein; 98.2 3.2E-06 7E-11 95.1 8.5 109 543-653 419-532 (623)
90 PRK08691 DNA polymerase III su 98.2 3E-05 6.5E-10 85.4 15.6 186 155-366 12-220 (709)
91 TIGR01242 26Sp45 26S proteasom 98.2 1.9E-05 4.1E-10 83.2 13.8 181 157-360 120-328 (364)
92 PRK14969 DNA polymerase III su 98.2 3.4E-05 7.5E-10 84.5 16.1 185 156-366 13-221 (527)
93 TIGR00767 rho transcription te 98.2 4.9E-06 1.1E-10 85.5 8.8 93 178-271 166-266 (415)
94 cd00116 LRR_RI Leucine-rich re 98.2 1.5E-06 3.3E-11 90.0 5.4 154 519-673 80-261 (319)
95 COG4886 Leucine-rich repeat (L 98.2 1E-06 2.2E-11 94.3 3.9 145 521-672 141-287 (394)
96 PRK14970 DNA polymerase III su 98.2 6.4E-05 1.4E-09 79.5 16.8 182 155-362 13-205 (367)
97 PRK14971 DNA polymerase III su 98.1 6.1E-05 1.3E-09 83.9 16.8 183 156-365 14-221 (614)
98 PRK08084 DNA replication initi 98.1 6.1E-05 1.3E-09 73.9 15.0 165 167-364 32-207 (235)
99 COG4886 Leucine-rich repeat (L 98.1 1.3E-06 2.8E-11 93.5 3.4 146 521-672 117-265 (394)
100 PRK14959 DNA polymerase III su 98.1 4.7E-05 1E-09 83.4 14.9 187 155-371 12-226 (624)
101 PRK07764 DNA polymerase III su 98.1 5.5E-05 1.2E-09 86.5 16.0 179 155-363 11-218 (824)
102 PRK14087 dnaA chromosomal repl 98.1 8.9E-05 1.9E-09 79.7 16.7 170 180-370 141-323 (450)
103 PRK09111 DNA polymerase III su 98.1 7.6E-05 1.6E-09 82.5 16.2 201 155-367 20-234 (598)
104 PF14516 AAA_35: AAA-like doma 98.1 0.00017 3.7E-09 74.6 18.0 211 155-373 7-246 (331)
105 PRK05642 DNA replication initi 98.1 9E-05 2E-09 72.6 15.1 149 180-363 45-205 (234)
106 KOG2028 ATPase related to the 98.1 2.5E-05 5.4E-10 77.3 10.9 174 157-360 136-330 (554)
107 PRK14954 DNA polymerase III su 98.1 9.7E-05 2.1E-09 81.8 16.7 199 155-361 12-223 (620)
108 PRK14950 DNA polymerase III su 98.1 0.00077 1.7E-08 75.3 23.5 200 155-368 12-223 (585)
109 PRK03992 proteasome-activating 98.1 5.7E-05 1.2E-09 79.9 13.8 180 157-359 129-336 (389)
110 PRK08903 DnaA regulatory inact 98.0 4.2E-05 9.1E-10 74.9 11.9 174 158-370 17-203 (227)
111 PRK07133 DNA polymerase III su 98.0 0.00011 2.4E-09 81.8 16.2 180 155-364 14-217 (725)
112 PRK14952 DNA polymerase III su 98.0 0.00013 2.9E-09 80.2 16.6 185 155-369 9-223 (584)
113 PRK08451 DNA polymerase III su 98.0 0.00015 3.2E-09 78.6 16.6 187 155-367 10-219 (535)
114 TIGR03345 VI_ClpV1 type VI sec 98.0 8.9E-05 1.9E-09 85.9 15.6 185 156-359 184-389 (852)
115 PHA02544 44 clamp loader, smal 98.0 5.9E-05 1.3E-09 78.0 12.9 149 155-334 17-171 (316)
116 TIGR02639 ClpA ATP-dependent C 98.0 0.0001 2.2E-09 84.8 15.8 167 157-337 180-359 (731)
117 PRK14953 DNA polymerase III su 98.0 0.00026 5.6E-09 76.7 17.8 183 155-367 12-221 (486)
118 PF12799 LRR_4: Leucine Rich r 98.0 9.1E-06 2E-10 56.1 4.2 37 569-605 2-38 (44)
119 PF00308 Bac_DnaA: Bacterial d 98.0 8E-05 1.7E-09 72.1 12.2 159 180-361 34-203 (219)
120 KOG3665 ZYG-1-like serine/thre 98.0 4.7E-06 1E-10 93.5 3.9 148 519-669 121-282 (699)
121 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 55.6 3.7 39 614-653 2-40 (44)
122 KOG2227 Pre-initiation complex 97.9 0.0011 2.4E-08 68.4 19.5 210 156-371 147-373 (529)
123 KOG0989 Replication factor C, 97.9 9.4E-05 2E-09 72.1 11.3 189 154-361 31-225 (346)
124 KOG2543 Origin recognition com 97.9 0.00017 3.7E-09 72.4 13.1 169 159-335 6-192 (438)
125 PRK06305 DNA polymerase III su 97.9 0.00049 1.1E-08 74.1 17.8 184 156-366 14-223 (451)
126 PRK06647 DNA polymerase III su 97.9 0.0004 8.6E-09 76.5 17.3 181 155-366 12-220 (563)
127 CHL00095 clpC Clp protease ATP 97.9 0.00017 3.7E-09 83.9 15.2 187 158-358 178-379 (821)
128 PRK14948 DNA polymerase III su 97.9 0.00044 9.6E-09 77.1 17.2 200 156-368 13-224 (620)
129 PRK05563 DNA polymerase III su 97.9 0.0005 1.1E-08 76.1 17.4 195 155-364 12-218 (559)
130 TIGR02881 spore_V_K stage V sp 97.9 0.0001 2.2E-09 73.7 10.9 27 179-205 41-67 (261)
131 KOG3665 ZYG-1-like serine/thre 97.8 9.3E-06 2E-10 91.2 3.5 59 540-602 171-231 (699)
132 KOG4237 Extracellular matrix p 97.8 4.2E-06 9.2E-11 83.6 0.6 138 531-673 57-199 (498)
133 COG1373 Predicted ATPase (AAA+ 97.8 0.00015 3.3E-09 76.7 12.1 138 163-332 21-163 (398)
134 TIGR03689 pup_AAA proteasome A 97.8 0.00031 6.7E-09 75.7 14.3 171 157-338 180-380 (512)
135 PRK00149 dnaA chromosomal repl 97.8 0.00048 1E-08 74.7 16.0 182 180-385 148-349 (450)
136 TIGR02880 cbbX_cfxQ probable R 97.8 0.0004 8.7E-09 70.1 14.2 132 182-337 60-209 (284)
137 KOG4237 Extracellular matrix p 97.8 1.7E-06 3.6E-11 86.4 -2.9 127 519-647 66-199 (498)
138 PRK07399 DNA polymerase III su 97.8 0.00096 2.1E-08 68.2 16.9 199 158-367 3-222 (314)
139 PRK11331 5-methylcytosine-spec 97.8 0.00013 2.9E-09 76.5 10.7 107 160-272 176-284 (459)
140 CHL00181 cbbX CbbX; Provisiona 97.8 0.00064 1.4E-08 68.6 14.9 133 181-337 60-210 (287)
141 PTZ00361 26 proteosome regulat 97.7 0.00063 1.4E-08 72.3 15.1 181 157-360 181-389 (438)
142 PTZ00454 26S protease regulato 97.7 0.0004 8.7E-09 73.2 13.4 182 156-360 142-351 (398)
143 PRK14965 DNA polymerase III su 97.7 0.00061 1.3E-08 75.7 15.4 185 155-370 12-225 (576)
144 KOG1859 Leucine-rich repeat pr 97.7 1E-06 2.2E-11 94.3 -6.1 105 564-673 183-290 (1096)
145 TIGR00362 DnaA chromosomal rep 97.7 0.00093 2E-08 71.5 16.2 161 180-364 136-308 (405)
146 PRK14086 dnaA chromosomal repl 97.7 0.0015 3.2E-08 71.6 17.4 181 181-385 315-515 (617)
147 KOG0531 Protein phosphatase 1, 97.7 1.3E-05 2.9E-10 86.0 1.8 104 540-647 93-197 (414)
148 COG2255 RuvB Holliday junction 97.7 0.0015 3.1E-08 63.3 15.2 187 155-371 22-228 (332)
149 PRK14088 dnaA chromosomal repl 97.7 0.0013 2.8E-08 70.7 16.8 183 180-385 130-332 (440)
150 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.9E-11 93.4 -6.1 129 519-653 163-295 (1096)
151 TIGR03346 chaperone_ClpB ATP-d 97.7 0.0011 2.5E-08 77.4 17.1 166 157-337 171-350 (852)
152 PRK15386 type III secretion pr 97.7 6.9E-05 1.5E-09 77.6 6.0 81 540-634 50-136 (426)
153 PRK12422 chromosomal replicati 97.6 0.0023 5E-08 68.7 17.1 159 180-360 141-307 (445)
154 KOG4579 Leucine-rich repeat (L 97.6 6.3E-06 1.4E-10 70.3 -1.9 73 559-631 68-141 (177)
155 PRK05707 DNA polymerase III su 97.6 0.0021 4.6E-08 66.0 16.1 153 180-366 22-203 (328)
156 PF00004 AAA: ATPase family as 97.6 8.8E-05 1.9E-09 65.6 5.1 69 183-272 1-70 (132)
157 TIGR01241 FtsH_fam ATP-depende 97.6 0.0019 4.1E-08 71.0 16.6 182 156-360 52-260 (495)
158 KOG3207 Beta-tubulin folding c 97.6 2.7E-05 5.8E-10 79.1 1.7 126 519-647 196-337 (505)
159 PRK10865 protein disaggregatio 97.6 0.0015 3.2E-08 76.1 16.2 159 156-336 175-354 (857)
160 PRK11034 clpA ATP-dependent Cl 97.6 0.00018 3.9E-09 81.8 8.4 165 158-336 185-362 (758)
161 PF05673 DUF815: Protein of un 97.5 0.0039 8.6E-08 59.9 15.2 53 155-207 23-79 (249)
162 KOG0991 Replication factor C, 97.5 0.0013 2.8E-08 61.5 11.5 74 155-228 23-96 (333)
163 PRK06620 hypothetical protein; 97.5 0.00063 1.4E-08 65.5 9.7 133 181-360 45-183 (214)
164 PRK15386 type III secretion pr 97.5 0.0005 1.1E-08 71.4 9.3 113 520-646 52-187 (426)
165 PRK08118 topology modulation p 97.5 7.1E-05 1.5E-09 69.1 2.8 35 181-215 2-37 (167)
166 CHL00176 ftsH cell division pr 97.5 0.0023 5E-08 71.5 15.0 180 157-359 181-387 (638)
167 PRK08058 DNA polymerase III su 97.4 0.0044 9.4E-08 64.1 15.9 145 161-335 7-181 (329)
168 PHA00729 NTP-binding motif con 97.4 0.001 2.2E-08 63.6 10.1 36 170-205 7-42 (226)
169 COG3267 ExeA Type II secretory 97.4 0.014 2.9E-07 56.1 17.4 192 166-369 38-248 (269)
170 KOG2120 SCF ubiquitin ligase, 97.4 1.3E-05 2.8E-10 77.3 -2.8 150 519-673 209-374 (419)
171 PRK08769 DNA polymerase III su 97.4 0.0078 1.7E-07 61.4 16.8 175 166-367 11-209 (319)
172 PRK08181 transposase; Validate 97.4 0.0095 2.1E-07 59.3 17.0 79 173-272 101-179 (269)
173 COG1222 RPT1 ATP-dependent 26S 97.4 0.01 2.3E-07 59.5 16.8 191 156-371 148-372 (406)
174 TIGR00763 lon ATP-dependent pr 97.4 0.0056 1.2E-07 71.0 17.6 46 160-205 321-372 (775)
175 KOG4579 Leucine-rich repeat (L 97.4 2.2E-05 4.8E-10 67.1 -1.6 93 564-657 49-143 (177)
176 TIGR00602 rad24 checkpoint pro 97.4 0.00071 1.5E-08 75.0 9.4 52 154-205 79-135 (637)
177 PRK12608 transcription termina 97.3 0.0018 4E-08 66.5 11.6 102 169-271 121-231 (380)
178 KOG1644 U2-associated snRNP A' 97.3 0.00035 7.6E-09 64.1 5.6 97 523-621 45-148 (233)
179 smart00382 AAA ATPases associa 97.3 0.00078 1.7E-08 60.0 8.0 91 180-274 2-92 (148)
180 PRK08116 hypothetical protein; 97.3 0.00062 1.4E-08 68.0 7.6 105 181-305 115-221 (268)
181 KOG0731 AAA+-type ATPase conta 97.3 0.0052 1.1E-07 68.3 15.1 183 158-362 310-520 (774)
182 PRK10787 DNA-binding ATP-depen 97.2 0.012 2.5E-07 67.8 17.7 164 160-336 323-506 (784)
183 COG0466 Lon ATP-dependent Lon 97.2 0.0032 7E-08 68.6 12.2 159 161-336 325-508 (782)
184 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0033 7.1E-08 68.0 12.4 182 158-360 227-429 (489)
185 COG0593 DnaA ATPase involved i 97.2 0.0061 1.3E-07 63.5 13.8 184 179-387 112-315 (408)
186 PRK06090 DNA polymerase III su 97.2 0.024 5.1E-07 57.8 17.8 165 166-366 10-201 (319)
187 PF13177 DNA_pol3_delta2: DNA 97.2 0.0027 5.9E-08 58.3 10.1 137 163-324 1-162 (162)
188 PRK06871 DNA polymerase III su 97.2 0.015 3.3E-07 59.4 16.4 177 167-363 10-200 (325)
189 PF10443 RNA12: RNA12 protein; 97.2 0.024 5.2E-07 59.0 17.4 204 164-384 1-298 (431)
190 KOG0531 Protein phosphatase 1, 97.2 0.00011 2.3E-09 79.0 0.5 128 540-673 70-197 (414)
191 KOG2004 Mitochondrial ATP-depe 97.2 0.0071 1.5E-07 65.8 13.9 160 160-336 412-596 (906)
192 KOG0741 AAA+-type ATPase [Post 97.2 0.0087 1.9E-07 62.8 14.0 165 179-371 537-717 (744)
193 PF04665 Pox_A32: Poxvirus A32 97.1 0.001 2.2E-08 64.3 6.9 37 181-219 14-50 (241)
194 KOG2123 Uncharacterized conser 97.1 4E-05 8.7E-10 73.3 -2.9 78 541-623 18-98 (388)
195 KOG0733 Nuclear AAA ATPase (VC 97.1 0.012 2.7E-07 62.8 14.6 94 158-272 189-294 (802)
196 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6E-09 67.5 2.3 100 568-670 43-151 (260)
197 KOG1644 U2-associated snRNP A' 97.1 0.0011 2.3E-08 61.0 5.8 100 543-646 43-150 (233)
198 TIGR02237 recomb_radB DNA repa 97.0 0.003 6.4E-08 61.0 9.1 87 180-270 12-107 (209)
199 KOG1909 Ran GTPase-activating 97.0 0.00036 7.9E-09 69.2 2.7 151 521-673 93-281 (382)
200 KOG0735 AAA+-type ATPase [Post 97.0 0.0018 3.8E-08 70.1 7.9 160 180-359 431-608 (952)
201 PF00448 SRP54: SRP54-type pro 97.0 0.0039 8.4E-08 59.1 9.5 88 180-269 1-92 (196)
202 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.004 8.6E-08 61.3 9.5 91 180-271 19-126 (235)
203 TIGR01243 CDC48 AAA family ATP 97.0 0.011 2.4E-07 68.4 14.3 180 158-360 452-657 (733)
204 COG1223 Predicted ATPase (AAA+ 96.9 0.0091 2E-07 57.0 10.8 181 157-360 119-319 (368)
205 PF05659 RPW8: Arabidopsis bro 96.9 0.012 2.5E-07 52.5 10.9 112 1-132 1-113 (147)
206 KOG2982 Uncharacterized conser 96.9 0.00026 5.5E-09 68.6 0.4 81 566-646 69-156 (418)
207 PRK06964 DNA polymerase III su 96.9 0.035 7.6E-07 57.2 15.8 104 247-366 115-225 (342)
208 PRK12727 flagellar biosynthesi 96.9 0.055 1.2E-06 58.3 17.6 87 180-269 350-437 (559)
209 cd01393 recA_like RecA is a b 96.9 0.0071 1.5E-07 59.1 10.5 91 180-271 19-125 (226)
210 TIGR02012 tigrfam_recA protein 96.9 0.0045 9.7E-08 62.9 9.0 85 180-271 55-144 (321)
211 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0055 1.2E-07 71.3 10.9 106 159-272 566-680 (852)
212 TIGR01243 CDC48 AAA family ATP 96.8 0.014 3E-07 67.5 14.0 181 157-360 176-381 (733)
213 PF01695 IstB_IS21: IstB-like 96.8 0.0014 3.1E-08 61.1 4.8 75 179-272 46-120 (178)
214 PRK12377 putative replication 96.8 0.0082 1.8E-07 58.9 10.3 75 179-271 100-174 (248)
215 PRK07993 DNA polymerase III su 96.8 0.063 1.4E-06 55.5 17.2 166 166-364 9-202 (334)
216 PRK07261 topology modulation p 96.8 0.0026 5.6E-08 59.0 6.3 34 182-215 2-36 (171)
217 PF13207 AAA_17: AAA domain; P 96.8 0.0011 2.4E-08 57.6 3.6 24 182-205 1-24 (121)
218 KOG1909 Ran GTPase-activating 96.8 0.00053 1.2E-08 68.0 1.5 129 519-647 156-309 (382)
219 cd00983 recA RecA is a bacter 96.8 0.0054 1.2E-07 62.4 8.7 85 180-271 55-144 (325)
220 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0046 9.9E-08 63.3 8.2 78 160-237 52-147 (361)
221 KOG2228 Origin recognition com 96.8 0.024 5.3E-07 56.4 12.7 168 160-337 25-220 (408)
222 PRK09354 recA recombinase A; P 96.8 0.0055 1.2E-07 62.8 8.7 85 180-271 60-149 (349)
223 TIGR02639 ClpA ATP-dependent C 96.8 0.0092 2E-07 68.8 11.5 102 160-272 455-565 (731)
224 COG0542 clpA ATP-binding subun 96.7 0.0066 1.4E-07 68.0 9.7 162 157-336 168-346 (786)
225 KOG2120 SCF ubiquitin ligase, 96.7 0.00014 3.1E-09 70.3 -2.8 151 520-675 185-351 (419)
226 PRK06526 transposase; Provisio 96.7 0.042 9.1E-07 54.4 14.4 74 180-272 98-171 (254)
227 TIGR02238 recomb_DMC1 meiotic 96.7 0.0075 1.6E-07 61.6 9.1 90 180-270 96-201 (313)
228 KOG2739 Leucine-rich acidic nu 96.7 0.00079 1.7E-08 64.5 1.9 85 587-674 39-128 (260)
229 PF07693 KAP_NTPase: KAP famil 96.7 0.11 2.4E-06 53.9 18.1 42 166-207 3-47 (325)
230 TIGR02640 gas_vesic_GvpN gas v 96.6 0.057 1.2E-06 54.0 14.7 58 165-229 8-65 (262)
231 PRK00771 signal recognition pa 96.6 0.11 2.3E-06 55.6 17.4 87 179-269 94-184 (437)
232 COG0470 HolB ATPase involved i 96.6 0.018 3.9E-07 59.7 11.5 140 161-324 3-169 (325)
233 KOG0739 AAA+-type ATPase [Post 96.6 0.021 4.6E-07 55.6 10.7 177 160-359 134-334 (439)
234 cd01133 F1-ATPase_beta F1 ATP 96.6 0.011 2.3E-07 58.5 9.0 91 179-271 68-174 (274)
235 PRK05541 adenylylsulfate kinas 96.6 0.0065 1.4E-07 56.8 7.2 36 179-216 6-41 (176)
236 PRK06696 uridine kinase; Valid 96.6 0.0037 8E-08 60.9 5.7 44 163-206 2-48 (223)
237 PRK09361 radB DNA repair and r 96.5 0.01 2.2E-07 58.0 8.6 45 180-227 23-67 (225)
238 COG2884 FtsE Predicted ATPase 96.5 0.0069 1.5E-07 55.3 6.6 28 179-206 27-54 (223)
239 COG1484 DnaC DNA replication p 96.5 0.015 3.3E-07 57.5 9.8 88 164-271 88-178 (254)
240 PRK07952 DNA replication prote 96.5 0.021 4.6E-07 55.9 10.7 91 165-272 82-174 (244)
241 KOG0734 AAA+-type ATPase conta 96.5 0.0085 1.8E-07 62.9 8.1 94 158-272 303-408 (752)
242 KOG2123 Uncharacterized conser 96.5 0.00019 4.2E-09 68.8 -3.4 100 567-668 18-123 (388)
243 TIGR03499 FlhF flagellar biosy 96.5 0.015 3.2E-07 58.8 9.7 88 179-269 193-281 (282)
244 PF08423 Rad51: Rad51; InterP 96.5 0.014 3.1E-07 57.9 9.5 90 180-270 38-143 (256)
245 KOG0730 AAA+-type ATPase [Post 96.5 0.08 1.7E-06 57.6 15.4 161 157-338 432-617 (693)
246 COG2812 DnaX DNA polymerase II 96.5 0.017 3.6E-07 62.3 10.5 191 155-360 12-214 (515)
247 COG0464 SpoVK ATPases of the A 96.5 0.034 7.4E-07 61.3 13.3 139 179-338 275-425 (494)
248 TIGR01425 SRP54_euk signal rec 96.5 0.12 2.5E-06 54.9 16.3 28 179-206 99-126 (429)
249 PRK08939 primosomal protein Dn 96.5 0.019 4.1E-07 58.5 10.2 91 163-272 135-229 (306)
250 PRK14722 flhF flagellar biosyn 96.5 0.017 3.6E-07 60.1 9.9 88 180-270 137-225 (374)
251 cd01120 RecA-like_NTPases RecA 96.4 0.017 3.8E-07 52.8 9.3 40 182-223 1-40 (165)
252 PRK04132 replication factor C 96.4 0.058 1.3E-06 61.9 14.8 156 188-368 574-733 (846)
253 KOG1969 DNA replication checkp 96.4 0.0084 1.8E-07 65.4 7.6 75 179-272 325-399 (877)
254 KOG2982 Uncharacterized conser 96.4 0.00095 2E-08 64.8 0.5 87 540-626 69-159 (418)
255 PRK11889 flhF flagellar biosyn 96.4 0.034 7.4E-07 57.5 11.6 87 179-269 240-329 (436)
256 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.031 6.7E-07 55.0 10.6 49 179-231 20-68 (237)
257 KOG0743 AAA+-type ATPase [Post 96.3 0.77 1.7E-05 48.1 20.7 175 166-373 212-417 (457)
258 PRK06835 DNA replication prote 96.3 0.016 3.4E-07 59.6 8.6 37 180-218 183-219 (329)
259 PLN03187 meiotic recombination 96.3 0.021 4.5E-07 58.9 9.5 90 180-270 126-231 (344)
260 PRK10865 protein disaggregatio 96.3 0.054 1.2E-06 63.4 14.0 105 160-272 569-682 (857)
261 COG1419 FlhF Flagellar GTP-bin 96.2 0.045 9.8E-07 56.6 11.5 99 167-269 186-290 (407)
262 PRK10733 hflB ATP-dependent me 96.2 0.05 1.1E-06 61.6 13.1 156 181-359 186-356 (644)
263 KOG0733 Nuclear AAA ATPase (VC 96.2 0.091 2E-06 56.5 13.7 154 179-360 544-718 (802)
264 TIGR03346 chaperone_ClpB ATP-d 96.2 0.061 1.3E-06 63.1 14.1 105 160-272 566-679 (852)
265 PLN03186 DNA repair protein RA 96.2 0.019 4.1E-07 59.2 8.7 90 180-270 123-228 (342)
266 PRK04301 radA DNA repair and r 96.2 0.033 7.2E-07 57.4 10.5 58 179-237 101-162 (317)
267 COG2607 Predicted ATPase (AAA+ 96.2 0.05 1.1E-06 51.7 10.4 87 159-272 60-151 (287)
268 TIGR02239 recomb_RAD51 DNA rep 96.2 0.021 4.6E-07 58.4 8.9 90 180-270 96-201 (316)
269 PF00154 RecA: recA bacterial 96.2 0.032 6.9E-07 56.6 9.8 86 180-272 53-143 (322)
270 COG1618 Predicted nucleotide k 96.1 0.0077 1.7E-07 53.4 4.6 28 181-208 6-33 (179)
271 PRK15455 PrkA family serine pr 96.1 0.0068 1.5E-07 65.4 5.1 48 159-206 76-129 (644)
272 PRK09270 nucleoside triphospha 96.1 0.037 8.1E-07 54.1 10.0 30 178-207 31-60 (229)
273 TIGR02236 recomb_radA DNA repa 96.1 0.037 8.1E-07 56.9 10.5 57 180-237 95-155 (310)
274 PTZ00494 tuzin-like protein; P 96.1 2.1 4.6E-05 44.9 22.3 163 155-336 367-544 (664)
275 PRK08699 DNA polymerase III su 96.1 0.19 4.2E-06 51.7 15.3 59 295-362 143-202 (325)
276 KOG2035 Replication factor C, 96.1 0.28 6.1E-06 47.7 15.0 208 160-389 14-262 (351)
277 PTZ00035 Rad51 protein; Provis 96.1 0.037 8E-07 57.2 10.0 90 180-270 118-223 (337)
278 cd01394 radB RadB. The archaea 96.0 0.026 5.7E-07 54.7 8.4 42 180-223 19-60 (218)
279 PRK06547 hypothetical protein; 96.0 0.0099 2.2E-07 55.0 5.1 36 170-205 5-40 (172)
280 PRK10536 hypothetical protein; 96.0 0.04 8.6E-07 53.8 9.1 56 157-214 53-108 (262)
281 COG1102 Cmk Cytidylate kinase 96.0 0.013 2.7E-07 52.1 5.2 45 182-239 2-46 (179)
282 KOG0728 26S proteasome regulat 96.0 0.24 5.3E-06 47.2 13.8 55 160-221 148-215 (404)
283 cd03115 SRP The signal recogni 96.0 0.037 8E-07 51.5 8.7 26 182-207 2-27 (173)
284 PRK08533 flagellar accessory p 95.9 0.047 1E-06 53.3 9.7 53 180-237 24-76 (230)
285 PF01583 APS_kinase: Adenylyls 95.9 0.009 1.9E-07 53.8 4.2 36 180-217 2-37 (156)
286 PRK10867 signal recognition pa 95.9 0.076 1.6E-06 56.5 11.9 28 179-206 99-126 (433)
287 PRK07667 uridine kinase; Provi 95.9 0.012 2.6E-07 55.8 5.2 38 169-206 4-43 (193)
288 COG0468 RecA RecA/RadA recombi 95.9 0.063 1.4E-06 53.4 10.3 88 179-270 59-151 (279)
289 PRK06067 flagellar accessory p 95.9 0.056 1.2E-06 53.1 10.1 87 179-270 24-130 (234)
290 TIGR00959 ffh signal recogniti 95.9 0.086 1.9E-06 56.1 12.0 88 179-269 98-191 (428)
291 cd01135 V_A-ATPase_B V/A-type 95.9 0.047 1E-06 54.0 9.2 94 179-272 68-178 (276)
292 PRK04328 hypothetical protein; 95.9 0.038 8.3E-07 54.7 8.8 41 179-221 22-62 (249)
293 PF00560 LRR_1: Leucine Rich R 95.8 0.0033 7.2E-08 36.0 0.7 21 614-634 1-21 (22)
294 PRK12724 flagellar biosynthesi 95.8 0.028 6.1E-07 58.9 8.0 84 180-269 223-308 (432)
295 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.048 1.1E-06 54.3 9.5 40 179-220 35-74 (259)
296 COG0542 clpA ATP-binding subun 95.8 0.25 5.5E-06 55.8 15.8 104 160-272 492-605 (786)
297 PRK06921 hypothetical protein; 95.8 0.043 9.4E-07 54.8 9.0 71 179-269 116-186 (266)
298 PF13238 AAA_18: AAA domain; P 95.8 0.0078 1.7E-07 52.7 3.4 22 183-204 1-22 (129)
299 PRK14974 cell division protein 95.8 0.11 2.3E-06 53.6 12.0 89 179-270 139-232 (336)
300 PRK12726 flagellar biosynthesi 95.8 0.058 1.3E-06 55.7 9.9 89 179-270 205-295 (407)
301 CHL00095 clpC Clp protease ATP 95.8 0.023 4.9E-07 66.5 8.0 106 159-272 509-623 (821)
302 PRK12723 flagellar biosynthesi 95.8 0.095 2.1E-06 55.0 11.8 88 179-270 173-264 (388)
303 PF07728 AAA_5: AAA domain (dy 95.8 0.021 4.6E-07 50.9 6.1 42 183-229 2-43 (139)
304 PLN00020 ribulose bisphosphate 95.8 0.022 4.8E-07 58.1 6.7 30 178-207 146-175 (413)
305 PF00485 PRK: Phosphoribulokin 95.7 0.011 2.4E-07 56.2 4.0 25 182-206 1-25 (194)
306 TIGR00554 panK_bact pantothena 95.7 0.068 1.5E-06 53.7 9.7 28 178-205 60-87 (290)
307 COG0541 Ffh Signal recognition 95.7 1.8 3.8E-05 45.4 19.8 58 179-239 99-158 (451)
308 cd02025 PanK Pantothenate kina 95.6 0.059 1.3E-06 52.2 9.0 24 182-205 1-24 (220)
309 PF13481 AAA_25: AAA domain; P 95.6 0.073 1.6E-06 50.4 9.6 89 181-271 33-152 (193)
310 PRK11034 clpA ATP-dependent Cl 95.6 0.019 4.1E-07 65.6 6.3 102 160-272 459-569 (758)
311 cd02019 NK Nucleoside/nucleoti 95.6 0.011 2.5E-07 45.3 3.1 23 182-204 1-23 (69)
312 PRK09183 transposase/IS protei 95.6 0.034 7.4E-07 55.3 7.3 27 180-206 102-128 (259)
313 TIGR01069 mutS2 MutS2 family p 95.6 0.014 3E-07 67.1 5.1 197 178-388 320-523 (771)
314 PF13671 AAA_33: AAA domain; P 95.6 0.012 2.6E-07 52.7 3.6 24 182-205 1-24 (143)
315 PRK05480 uridine/cytidine kina 95.6 0.013 2.7E-07 56.6 4.0 27 178-204 4-30 (209)
316 TIGR00064 ftsY signal recognit 95.6 0.098 2.1E-06 52.4 10.4 88 178-269 70-163 (272)
317 KOG0736 Peroxisome assembly fa 95.5 0.1 2.2E-06 57.7 10.8 96 156-272 669-776 (953)
318 PRK08233 hypothetical protein; 95.5 0.012 2.5E-07 55.3 3.6 26 180-205 3-28 (182)
319 cd01121 Sms Sms (bacterial rad 95.5 0.04 8.6E-07 57.7 7.7 87 180-271 82-169 (372)
320 PRK05703 flhF flagellar biosyn 95.5 0.05 1.1E-06 58.2 8.6 87 180-269 221-308 (424)
321 cd02027 APSK Adenosine 5'-phos 95.5 0.058 1.2E-06 48.7 7.8 24 182-205 1-24 (149)
322 PRK00889 adenylylsulfate kinas 95.5 0.056 1.2E-06 50.3 8.0 28 179-206 3-30 (175)
323 PRK09519 recA DNA recombinatio 95.5 0.063 1.4E-06 60.9 9.5 85 180-271 60-149 (790)
324 PRK04296 thymidine kinase; Pro 95.5 0.026 5.6E-07 53.4 5.6 111 181-306 3-117 (190)
325 PRK12597 F0F1 ATP synthase sub 95.4 0.058 1.3E-06 57.7 8.7 92 179-271 142-248 (461)
326 PTZ00301 uridine kinase; Provi 95.4 0.014 3.1E-07 55.8 3.8 26 180-205 3-28 (210)
327 PRK06762 hypothetical protein; 95.4 0.015 3.1E-07 53.8 3.8 25 180-204 2-26 (166)
328 cd01124 KaiC KaiC is a circadi 95.4 0.056 1.2E-06 50.9 7.9 45 182-230 1-45 (187)
329 TIGR00235 udk uridine kinase. 95.4 0.015 3.2E-07 56.0 3.8 28 178-205 4-31 (207)
330 PF06309 Torsin: Torsin; Inte 95.4 0.19 4.1E-06 43.2 10.0 45 161-205 27-78 (127)
331 cd01131 PilT Pilus retraction 95.4 0.018 3.9E-07 54.9 4.2 107 181-307 2-111 (198)
332 COG1066 Sms Predicted ATP-depe 95.3 0.042 9E-07 56.5 6.8 86 180-271 93-179 (456)
333 PF00006 ATP-synt_ab: ATP synt 95.3 0.075 1.6E-06 51.0 8.3 96 171-270 5-115 (215)
334 COG0194 Gmk Guanylate kinase [ 95.3 0.066 1.4E-06 49.1 7.5 25 180-204 4-28 (191)
335 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.011 2.4E-07 57.0 2.6 24 180-203 29-52 (213)
336 TIGR02655 circ_KaiC circadian 95.3 0.066 1.4E-06 58.6 9.0 87 179-270 262-363 (484)
337 TIGR03305 alt_F1F0_F1_bet alte 95.3 0.068 1.5E-06 56.8 8.6 93 179-272 137-244 (449)
338 PRK13531 regulatory ATPase Rav 95.3 0.028 6.1E-07 59.9 5.8 50 160-211 21-70 (498)
339 TIGR01360 aden_kin_iso1 adenyl 95.3 0.017 3.6E-07 54.6 3.7 26 179-204 2-27 (188)
340 PRK03839 putative kinase; Prov 95.3 0.016 3.4E-07 54.4 3.5 24 182-205 2-25 (180)
341 KOG1532 GTPase XAB1, interacts 95.3 0.023 4.9E-07 54.8 4.4 60 179-240 18-88 (366)
342 PF08433 KTI12: Chromatin asso 95.3 0.061 1.3E-06 53.7 7.7 26 181-206 2-27 (270)
343 PF06745 KaiC: KaiC; InterPro 95.3 0.039 8.5E-07 53.9 6.4 90 179-272 18-127 (226)
344 cd03214 ABC_Iron-Siderophores_ 95.2 0.078 1.7E-06 49.6 8.1 121 179-308 24-161 (180)
345 COG1703 ArgK Putative periplas 95.2 0.031 6.7E-07 55.0 5.2 64 169-232 38-103 (323)
346 KOG1514 Origin recognition com 95.2 1.2 2.7E-05 49.1 17.6 109 159-271 396-519 (767)
347 COG0563 Adk Adenylate kinase a 95.2 0.035 7.5E-07 51.7 5.4 24 182-205 2-25 (178)
348 PRK14721 flhF flagellar biosyn 95.2 0.15 3.2E-06 54.1 10.6 87 180-269 191-278 (420)
349 COG0467 RAD55 RecA-superfamily 95.2 0.063 1.4E-06 53.7 7.7 55 178-237 21-75 (260)
350 KOG3347 Predicted nucleotide k 95.2 0.041 8.9E-07 48.1 5.3 69 180-258 7-75 (176)
351 COG4608 AppF ABC-type oligopep 95.1 0.096 2.1E-06 51.2 8.4 123 179-310 38-175 (268)
352 PRK05439 pantothenate kinase; 95.1 0.15 3.1E-06 51.8 10.1 28 178-205 84-111 (311)
353 COG0572 Udk Uridine kinase [Nu 95.1 0.02 4.3E-07 54.2 3.6 28 179-206 7-34 (218)
354 COG4088 Predicted nucleotide k 95.1 0.019 4E-07 53.1 3.2 27 181-207 2-28 (261)
355 PRK08972 fliI flagellum-specif 95.1 0.064 1.4E-06 56.7 7.6 90 179-272 161-264 (444)
356 PRK00625 shikimate kinase; Pro 95.1 0.019 4.2E-07 53.1 3.3 24 182-205 2-25 (173)
357 KOG0729 26S proteasome regulat 95.1 0.13 2.9E-06 49.4 8.8 94 157-271 175-281 (435)
358 PRK06995 flhF flagellar biosyn 95.0 0.12 2.7E-06 55.6 9.7 87 180-269 256-343 (484)
359 PRK13765 ATP-dependent proteas 95.0 0.046 1E-06 61.1 6.8 78 156-237 28-105 (637)
360 PRK04040 adenylate kinase; Pro 95.0 0.022 4.7E-07 53.7 3.6 26 180-205 2-27 (188)
361 PRK08927 fliI flagellum-specif 95.0 0.099 2.1E-06 55.5 8.8 90 179-272 157-260 (442)
362 PRK07132 DNA polymerase III su 95.0 0.86 1.9E-05 46.2 15.3 159 169-358 6-177 (299)
363 PRK12678 transcription termina 95.0 0.055 1.2E-06 58.4 6.9 100 171-271 406-514 (672)
364 TIGR02858 spore_III_AA stage I 95.0 0.032 7E-07 55.6 5.0 124 170-307 100-231 (270)
365 cd00544 CobU Adenosylcobinamid 95.0 0.089 1.9E-06 48.5 7.5 81 182-269 1-82 (169)
366 PF03205 MobB: Molybdopterin g 95.0 0.026 5.6E-07 50.3 3.9 39 181-220 1-39 (140)
367 PRK06002 fliI flagellum-specif 95.0 0.072 1.6E-06 56.6 7.7 91 179-272 164-266 (450)
368 KOG0744 AAA+-type ATPase [Post 95.0 0.045 9.7E-07 54.2 5.6 28 180-207 177-204 (423)
369 PF12775 AAA_7: P-loop contain 95.0 0.022 4.7E-07 57.1 3.7 89 169-271 23-111 (272)
370 COG1428 Deoxynucleoside kinase 95.0 0.021 4.6E-07 53.3 3.3 28 180-207 4-31 (216)
371 PRK08149 ATP synthase SpaL; Va 95.0 0.092 2E-06 55.6 8.4 90 179-272 150-253 (428)
372 TIGR00390 hslU ATP-dependent p 94.9 0.081 1.8E-06 55.3 7.8 47 160-206 13-73 (441)
373 PF00560 LRR_1: Leucine Rich R 94.9 0.0093 2E-07 34.1 0.5 21 569-589 1-21 (22)
374 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.27 5.8E-06 48.1 11.2 52 180-236 20-71 (229)
375 PF00910 RNA_helicase: RNA hel 94.9 0.021 4.5E-07 48.4 2.8 24 183-206 1-24 (107)
376 PRK09280 F0F1 ATP synthase sub 94.9 0.13 2.7E-06 55.0 9.2 94 178-272 142-250 (463)
377 TIGR02030 BchI-ChlI magnesium 94.9 0.046 1E-06 56.3 5.8 48 158-205 3-50 (337)
378 PRK14723 flhF flagellar biosyn 94.8 0.21 4.6E-06 56.6 11.3 86 180-269 185-272 (767)
379 TIGR01359 UMP_CMP_kin_fam UMP- 94.8 0.021 4.6E-07 53.6 3.0 24 182-205 1-24 (183)
380 PRK00131 aroK shikimate kinase 94.8 0.029 6.3E-07 52.1 3.9 26 180-205 4-29 (175)
381 TIGR01039 atpD ATP synthase, F 94.8 0.2 4.2E-06 53.4 10.3 94 178-272 141-249 (461)
382 KOG2170 ATPase of the AAA+ sup 94.8 0.14 3.1E-06 50.3 8.5 98 161-272 84-190 (344)
383 cd03223 ABCD_peroxisomal_ALDP 94.8 0.089 1.9E-06 48.5 7.0 27 179-205 26-52 (166)
384 PF03308 ArgK: ArgK protein; 94.8 0.07 1.5E-06 51.8 6.3 62 168-229 15-78 (266)
385 cd03247 ABCC_cytochrome_bd The 94.8 0.064 1.4E-06 50.1 6.1 27 179-205 27-53 (178)
386 KOG0727 26S proteasome regulat 94.7 0.19 4.2E-06 47.9 8.9 49 159-207 155-216 (408)
387 TIGR03575 selen_PSTK_euk L-ser 94.7 0.13 2.9E-06 52.8 8.6 24 183-206 2-25 (340)
388 PRK10751 molybdopterin-guanine 94.7 0.034 7.4E-07 51.1 3.9 28 179-206 5-32 (173)
389 CHL00081 chlI Mg-protoporyphyr 94.7 0.046 1E-06 56.4 5.2 50 156-205 14-63 (350)
390 KOG0927 Predicted transporter 94.7 0.63 1.4E-05 49.7 13.4 97 179-275 415-542 (614)
391 PRK00409 recombination and DNA 94.7 0.13 2.9E-06 59.4 9.4 184 178-388 325-528 (782)
392 COG5238 RNA1 Ran GTPase-activa 94.7 0.053 1.2E-06 52.3 5.1 109 539-647 89-225 (388)
393 TIGR01041 ATP_syn_B_arch ATP s 94.6 0.15 3.3E-06 54.6 9.1 94 179-272 140-250 (458)
394 TIGR02902 spore_lonB ATP-depen 94.6 0.05 1.1E-06 60.1 5.8 50 156-205 62-111 (531)
395 PF02562 PhoH: PhoH-like prote 94.6 0.046 1E-06 51.7 4.7 50 166-217 7-56 (205)
396 cd02023 UMPK Uridine monophosp 94.6 0.025 5.3E-07 54.0 2.9 23 182-204 1-23 (198)
397 PRK05342 clpX ATP-dependent pr 94.6 0.093 2E-06 55.7 7.4 46 160-205 72-133 (412)
398 TIGR00150 HI0065_YjeE ATPase, 94.6 0.073 1.6E-06 46.6 5.5 28 179-206 21-48 (133)
399 PF07726 AAA_3: ATPase family 94.6 0.037 7.9E-07 47.7 3.5 40 183-227 2-41 (131)
400 PRK13407 bchI magnesium chelat 94.6 0.049 1.1E-06 56.0 5.2 49 156-204 5-53 (334)
401 PRK15429 formate hydrogenlyase 94.6 0.54 1.2E-05 54.1 14.3 48 158-205 375-424 (686)
402 cd02024 NRK1 Nicotinamide ribo 94.6 0.027 5.9E-07 52.7 3.0 23 182-204 1-23 (187)
403 cd01122 GP4d_helicase GP4d_hel 94.6 0.25 5.4E-06 49.7 10.2 52 180-234 30-81 (271)
404 PRK06217 hypothetical protein; 94.5 0.029 6.4E-07 52.7 3.2 34 182-216 3-38 (183)
405 TIGR02322 phosphon_PhnN phosph 94.5 0.032 7E-07 52.2 3.5 25 181-205 2-26 (179)
406 PRK06936 type III secretion sy 94.5 0.12 2.6E-06 54.8 7.9 89 179-271 161-263 (439)
407 COG3640 CooC CO dehydrogenase 94.5 0.086 1.9E-06 50.0 6.0 51 182-240 2-52 (255)
408 cd02020 CMPK Cytidine monophos 94.5 0.031 6.8E-07 50.2 3.1 24 182-205 1-24 (147)
409 PRK10463 hydrogenase nickel in 94.5 0.07 1.5E-06 53.2 5.7 37 171-207 95-131 (290)
410 PRK11823 DNA repair protein Ra 94.5 0.089 1.9E-06 56.7 7.0 87 180-271 80-167 (446)
411 KOG0737 AAA+-type ATPase [Post 94.4 0.68 1.5E-05 47.1 12.5 29 179-207 126-154 (386)
412 TIGR01040 V-ATPase_V1_B V-type 94.4 0.16 3.5E-06 53.8 8.6 93 179-271 140-258 (466)
413 PF03215 Rad17: Rad17 cell cyc 94.4 0.063 1.4E-06 58.6 5.8 55 160-218 20-79 (519)
414 cd00227 CPT Chloramphenicol (C 94.4 0.036 7.9E-07 51.6 3.5 25 181-205 3-27 (175)
415 cd01134 V_A-ATPase_A V/A-type 94.4 0.087 1.9E-06 53.7 6.3 96 171-270 147-264 (369)
416 cd01125 repA Hexameric Replica 94.4 0.21 4.6E-06 49.1 9.1 25 182-206 3-27 (239)
417 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.13 2.8E-06 46.6 6.8 122 181-306 3-139 (159)
418 PF13504 LRR_7: Leucine rich r 94.4 0.028 6E-07 29.8 1.5 16 614-629 2-17 (17)
419 cd02021 GntK Gluconate kinase 94.4 0.032 6.9E-07 50.5 2.9 23 182-204 1-23 (150)
420 cd01132 F1_ATPase_alpha F1 ATP 94.4 0.13 2.7E-06 51.0 7.2 96 179-278 68-180 (274)
421 PTZ00088 adenylate kinase 1; P 94.4 0.072 1.6E-06 51.8 5.5 24 182-205 8-31 (229)
422 TIGR00073 hypB hydrogenase acc 94.4 0.044 9.5E-07 52.7 4.0 32 174-205 16-47 (207)
423 PF10236 DAP3: Mitochondrial r 94.4 1.8 3.9E-05 44.3 16.0 46 317-362 258-305 (309)
424 TIGR01650 PD_CobS cobaltochela 94.3 0.2 4.3E-06 51.0 8.7 62 160-228 46-107 (327)
425 PRK13949 shikimate kinase; Pro 94.3 0.039 8.4E-07 51.0 3.5 25 181-205 2-26 (169)
426 cd02028 UMPK_like Uridine mono 94.3 0.036 7.7E-07 51.8 3.2 25 182-206 1-25 (179)
427 PF13245 AAA_19: Part of AAA d 94.3 0.12 2.7E-06 40.4 5.7 26 179-204 9-35 (76)
428 KOG0738 AAA+-type ATPase [Post 94.3 0.17 3.8E-06 51.5 8.1 27 180-206 245-271 (491)
429 PRK05800 cobU adenosylcobinami 94.3 0.14 3E-06 47.3 7.0 81 182-270 3-86 (170)
430 PF13306 LRR_5: Leucine rich r 94.3 0.13 2.8E-06 44.9 6.7 115 540-664 10-128 (129)
431 PTZ00185 ATPase alpha subunit; 94.3 0.26 5.7E-06 52.8 9.8 94 179-272 188-301 (574)
432 PRK14530 adenylate kinase; Pro 94.3 0.04 8.6E-07 53.3 3.6 25 181-205 4-28 (215)
433 PRK14529 adenylate kinase; Pro 94.3 0.16 3.5E-06 48.9 7.7 82 183-270 3-86 (223)
434 TIGR00764 lon_rel lon-related 94.2 0.14 3.1E-06 57.4 8.3 76 158-237 17-92 (608)
435 COG1224 TIP49 DNA helicase TIP 94.2 0.1 2.2E-06 52.5 6.1 55 157-211 37-96 (450)
436 TIGR00416 sms DNA repair prote 94.2 0.13 2.9E-06 55.5 7.7 87 180-271 94-181 (454)
437 COG2019 AdkA Archaeal adenylat 94.2 0.047 1E-06 48.8 3.4 47 180-238 4-50 (189)
438 PRK13947 shikimate kinase; Pro 94.2 0.04 8.7E-07 51.1 3.3 24 182-205 3-26 (171)
439 PRK04196 V-type ATP synthase s 94.2 0.18 3.9E-06 54.1 8.5 93 179-272 142-252 (460)
440 cd01136 ATPase_flagellum-secre 94.2 0.18 3.8E-06 51.6 8.1 89 179-271 68-170 (326)
441 PRK05922 type III secretion sy 94.1 0.19 4.2E-06 53.3 8.5 90 179-272 156-259 (434)
442 COG0488 Uup ATPase components 94.1 0.81 1.7E-05 50.3 13.5 135 179-321 347-510 (530)
443 PRK03846 adenylylsulfate kinas 94.1 0.073 1.6E-06 50.7 5.0 30 177-206 21-50 (198)
444 PF00625 Guanylate_kin: Guanyl 94.1 0.069 1.5E-06 50.1 4.8 37 180-218 2-38 (183)
445 TIGR03263 guanyl_kin guanylate 94.1 0.04 8.7E-07 51.6 3.1 24 181-204 2-25 (180)
446 PRK14527 adenylate kinase; Pro 94.1 0.053 1.1E-06 51.4 3.9 28 178-205 4-31 (191)
447 CHL00060 atpB ATP synthase CF1 94.1 0.21 4.5E-06 53.6 8.6 93 179-272 160-274 (494)
448 PF08477 Miro: Miro-like prote 94.0 0.049 1.1E-06 46.9 3.3 24 183-206 2-25 (119)
449 COG0003 ArsA Predicted ATPase 94.0 0.11 2.5E-06 52.9 6.2 49 180-230 2-50 (322)
450 TIGR00176 mobB molybdopterin-g 94.0 0.05 1.1E-06 49.4 3.3 33 182-215 1-33 (155)
451 PRK05057 aroK shikimate kinase 94.0 0.055 1.2E-06 50.2 3.7 26 180-205 4-29 (172)
452 PRK05688 fliI flagellum-specif 94.0 0.2 4.4E-06 53.3 8.3 90 179-272 167-270 (451)
453 cd03287 ABC_MSH3_euk MutS3 hom 94.0 0.044 9.5E-07 53.0 3.1 24 179-202 30-53 (222)
454 COG0529 CysC Adenylylsulfate k 94.0 0.3 6.6E-06 44.3 8.1 32 176-207 19-50 (197)
455 COG1936 Predicted nucleotide k 93.9 0.045 9.7E-07 49.4 2.8 20 182-201 2-21 (180)
456 PF13479 AAA_24: AAA domain 93.9 0.22 4.8E-06 48.0 7.9 31 181-221 4-34 (213)
457 cd00464 SK Shikimate kinase (S 93.9 0.05 1.1E-06 49.3 3.3 23 183-205 2-24 (154)
458 PRK07594 type III secretion sy 93.9 0.18 3.9E-06 53.5 7.8 91 178-272 153-257 (433)
459 PRK13975 thymidylate kinase; P 93.9 0.053 1.2E-06 51.6 3.6 26 181-206 3-28 (196)
460 PRK10416 signal recognition pa 93.9 0.38 8.3E-06 49.3 10.0 29 179-207 113-141 (318)
461 PRK12339 2-phosphoglycerate ki 93.9 0.057 1.2E-06 51.2 3.7 26 180-205 3-28 (197)
462 PRK09099 type III secretion sy 93.9 0.19 4.1E-06 53.6 7.9 92 178-272 161-265 (441)
463 cd01672 TMPK Thymidine monopho 93.9 0.17 3.7E-06 48.0 7.1 25 182-206 2-26 (200)
464 PRK00300 gmk guanylate kinase; 93.9 0.057 1.2E-06 51.8 3.7 27 179-205 4-30 (205)
465 COG1763 MobB Molybdopterin-gua 93.9 0.064 1.4E-06 48.6 3.7 28 180-207 2-29 (161)
466 TIGR02655 circ_KaiC circadian 93.8 0.28 6E-06 53.8 9.4 86 179-269 20-129 (484)
467 TIGR00041 DTMP_kinase thymidyl 93.8 0.17 3.8E-06 47.9 7.0 26 181-206 4-29 (195)
468 TIGR03496 FliI_clade1 flagella 93.8 0.19 4.1E-06 53.3 7.7 89 179-271 136-238 (411)
469 PRK06793 fliI flagellum-specif 93.8 0.19 4.2E-06 53.2 7.8 91 179-272 155-258 (432)
470 COG0714 MoxR-like ATPases [Gen 93.8 0.15 3.3E-06 52.9 7.0 64 161-231 26-89 (329)
471 PF08298 AAA_PrkA: PrkA AAA do 93.8 0.11 2.3E-06 53.0 5.5 80 160-244 62-154 (358)
472 TIGR00382 clpX endopeptidase C 93.8 0.24 5.2E-06 52.4 8.4 46 160-205 78-141 (413)
473 cd02029 PRK_like Phosphoribulo 93.8 0.28 6.1E-06 48.2 8.2 25 182-206 1-25 (277)
474 COG1124 DppF ABC-type dipeptid 93.8 0.068 1.5E-06 51.1 3.9 27 179-205 32-58 (252)
475 PF03029 ATP_bind_1: Conserved 93.7 0.056 1.2E-06 52.9 3.5 32 185-218 1-32 (238)
476 PF06068 TIP49: TIP49 C-termin 93.7 0.1 2.2E-06 53.3 5.3 53 158-210 23-80 (398)
477 PRK05917 DNA polymerase III su 93.7 1.3 2.8E-05 44.5 13.0 38 168-205 6-44 (290)
478 TIGR01313 therm_gnt_kin carboh 93.7 0.047 1E-06 50.2 2.6 22 183-204 1-22 (163)
479 cd00984 DnaB_C DnaB helicase C 93.7 0.6 1.3E-05 46.0 10.8 51 180-233 13-63 (242)
480 PF03266 NTPase_1: NTPase; In 93.7 0.062 1.3E-06 49.5 3.4 23 183-205 2-24 (168)
481 PRK13234 nifH nitrogenase redu 93.7 0.098 2.1E-06 53.3 5.2 40 179-220 3-42 (295)
482 PRK10078 ribose 1,5-bisphospho 93.6 0.055 1.2E-06 51.0 3.1 25 181-205 3-27 (186)
483 PRK05201 hslU ATP-dependent pr 93.6 0.22 4.7E-06 52.3 7.6 47 160-206 16-76 (443)
484 cd03282 ABC_MSH4_euk MutS4 hom 93.6 0.1 2.2E-06 49.8 4.9 25 179-203 28-52 (204)
485 TIGR03498 FliI_clade3 flagella 93.6 0.2 4.3E-06 53.1 7.4 91 179-272 139-242 (418)
486 cd00071 GMPK Guanosine monopho 93.6 0.053 1.2E-06 48.1 2.8 24 182-205 1-24 (137)
487 PRK13695 putative NTPase; Prov 93.6 0.099 2.1E-06 48.6 4.7 34 182-216 2-35 (174)
488 PF02374 ArsA_ATPase: Anion-tr 93.6 0.13 2.9E-06 52.4 6.0 45 181-227 2-46 (305)
489 COG4240 Predicted kinase [Gene 93.5 0.5 1.1E-05 44.6 9.0 83 177-260 47-133 (300)
490 PRK13948 shikimate kinase; Pro 93.5 0.079 1.7E-06 49.5 3.9 28 178-205 8-35 (182)
491 PRK09302 circadian clock prote 93.5 0.49 1.1E-05 52.4 10.8 86 180-270 273-373 (509)
492 CHL00206 ycf2 Ycf2; Provisiona 93.5 0.78 1.7E-05 56.6 12.6 28 179-206 1629-1656(2281)
493 PF03193 DUF258: Protein of un 93.5 0.12 2.6E-06 46.8 4.8 34 168-204 26-59 (161)
494 PRK13946 shikimate kinase; Pro 93.4 0.074 1.6E-06 50.0 3.6 26 180-205 10-35 (184)
495 cd03243 ABC_MutS_homologs The 93.4 0.043 9.3E-07 52.5 2.0 22 181-202 30-51 (202)
496 TIGR01287 nifH nitrogenase iro 93.4 0.074 1.6E-06 53.7 3.8 37 181-219 1-37 (275)
497 cd00820 PEPCK_HprK Phosphoenol 93.4 0.069 1.5E-06 44.7 2.9 22 180-201 15-36 (107)
498 PLN02200 adenylate kinase fami 93.4 0.077 1.7E-06 51.9 3.7 26 180-205 43-68 (234)
499 PF01078 Mg_chelatase: Magnesi 93.4 0.13 2.9E-06 48.4 5.1 44 158-203 2-45 (206)
500 PF05970 PIF1: PIF1-like helic 93.4 0.2 4.4E-06 52.6 7.2 41 166-206 8-48 (364)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-83 Score=716.44 Aligned_cols=593 Identities=29% Similarity=0.463 Sum_probs=490.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhhhhhhhhhhhh-----------------c
Q 005834 39 VDELKDQVMQLGCKREMVQQPVNHARLQGDELYEGVADWLHSVDEFISEGVANSIIDDENGA-----------------K 101 (675)
Q Consensus 39 ~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~v~~~~~~~~~ed~ld~~~~~-----------------~ 101 (675)
+.+.++.+..|+..|..++.++++++.++. ....+..|...+++++|+ +||.++.+.-. +
T Consensus 23 ~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~--~e~~~~~~~v~~~~~~~~~~l~~~~~~~~ 99 (889)
T KOG4658|consen 23 LDGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYL--AEDIIWLFLVEEIERKANDLLSTRSVERQ 99 (889)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHhhhhHHHHH
Confidence 445667888999999999999999999864 467788999999999999 99999865311 1
Q ss_pred ccccCCCC-CChhhhhHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCCCCccccccCccccccHHHHHHHHHHHhccCC
Q 005834 102 KYCFKGLC-PNLLSRYKLSKKAAKAAKDAADLVGKGNFSSVSYRP-APKSTEYMQVKDYEAFDSRKKVFQDVLEALKDDK 179 (675)
Q Consensus 102 ~~~~~~~~-~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~ 179 (675)
.-|+.+.| .....-+.+++++.++...++.+...+.+..+...+ ++......+...... +|.+..++++.+.|.+++
T Consensus 100 ~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~ 178 (889)
T KOG4658|consen 100 RLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD 178 (889)
T ss_pred HHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC
Confidence 12222222 234444566677777777777776555565554321 111222222222223 899999999999999888
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc--CcCHHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT-EDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL--NESIFDRANRLCRVL 256 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 256 (675)
..+++|+||||+||||||+.++|+.. ++.+||.++||+||++++..+++.+|++.++..... .....+.+..+.+.|
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L 258 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLL 258 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHh
Confidence 89999999999999999999999998 999999999999999999999999999999874432 223357778888888
Q ss_pred hccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 257 KNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 257 ~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
.. |||||||||||+..+|+.++.|+|. ..+||+|++|||++.|+...+++...++++.|+++|||+||++.+
T Consensus 259 ~~-krfllvLDDIW~~~dw~~I~~~~p~-------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v 330 (889)
T KOG4658|consen 259 EG-KRFLLVLDDIWEEVDWDKIGVPFPS-------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKV 330 (889)
T ss_pred cc-CceEEEEecccccccHHhcCCCCCC-------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhh
Confidence 85 8999999999999999999999998 889999999999999987778889999999999999999999999
Q ss_pred CCC--CCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcC-ChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCC
Q 005834 337 GDS--MKTSAFQPIAHEIVGRCGELPVALITLAKALKNM-SLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGN 413 (675)
Q Consensus 337 ~~~--~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 413 (675)
+.. ...+.++++|++|+++|+|+|||++++|+.|+.+ +..+|+++.+.+.+....+.++..+.+..+|.+||+.||+
T Consensus 331 ~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~ 410 (889)
T KOG4658|consen 331 GPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE 410 (889)
T ss_pred ccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH
Confidence 844 3345589999999999999999999999999977 8889999999988876666667789999999999999996
Q ss_pred hhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHhccccCCC---CCCcccccHHHHH
Q 005834 414 KEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARSTVHTLISKLKSSCLLLDGD---AEDEVKMHDVIRV 490 (675)
Q Consensus 414 ~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~mHdlv~~ 490 (675)
+ +|.||+|||+||+||.|+++.|+.+|+||||+.+....+.+++.+++++.+|++++|++... ...+|+|||+|||
T Consensus 411 ~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe 489 (889)
T KOG4658|consen 411 E-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVRE 489 (889)
T ss_pred H-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHH
Confidence 6 99999999999999999999999999999999886666778888999999999999998764 4578999999999
Q ss_pred HHHHHhh-----hcccccccCccchhhhhhhcccCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhc
Q 005834 491 VAVSIAK-----EELMFNIPNVADLDKKMEETVQEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFD 565 (675)
Q Consensus 491 ~a~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 565 (675)
+|.++++ +|+++. ..+...........+..+|++++.++.+..++....+++|++|.+..+......++..+|.
T Consensus 490 ~al~ias~~~~~~e~~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~ 568 (889)
T KOG4658|consen 490 MALWIASDFGKQEENQIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFR 568 (889)
T ss_pred HHHHHhccccccccceEE-ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHh
Confidence 9999999 676443 2221111111222367899999999999999999999999999997664335567778899
Q ss_pred CCCCccEEEecCC-CCCCCccccccccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCC-CCccchhhcCCCCCCEec
Q 005834 566 GTEGLRVLNFTGI-HFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSD-IERLPLEFGQLTRLQLLD 642 (675)
Q Consensus 566 ~l~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~ 642 (675)
.++.|++|||++| .+.++|++|+.|.|||||+++++.++. |.++++|..|.+|++..+. +..+|..+..|++||+|.
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 9999999999976 467899999999999999999999999 9999999999999999885 445566666699999999
Q ss_pred CcC
Q 005834 643 LSN 645 (675)
Q Consensus 643 l~~ 645 (675)
+..
T Consensus 649 l~~ 651 (889)
T KOG4658|consen 649 LPR 651 (889)
T ss_pred eec
Confidence 876
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-51 Score=487.27 Aligned_cols=474 Identities=21% Similarity=0.321 Sum_probs=352.1
Q ss_pred CccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe---CCC----------
Q 005834 157 DYEAFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV---TEN---------- 221 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~---------- 221 (675)
+...++||+..++++..+|. .+++++|+|+||||+||||||+++|+.... +|++.+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccccccc
Confidence 45578999999999998875 567899999999999999999999998764 5988877642 111
Q ss_pred -CC-HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEE
Q 005834 222 -PD-HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTII 299 (675)
Q Consensus 222 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~il 299 (675)
.+ ...++.+++..+-........ ....+.+.+.+ +|+||||||||+..+|+.+...... .++||+||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~-krvLLVLDdv~~~~~l~~L~~~~~~-------~~~GsrII 328 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKH-RKVLIFIDDLDDQDVLDALAGQTQW-------FGSGSRII 328 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhC-CeEEEEEeCCCCHHHHHHHHhhCcc-------CCCCcEEE
Confidence 01 123444444443222111111 12345666764 8999999999999999888655444 57899999
Q ss_pred EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCC-CCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHH
Q 005834 300 LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSM-KTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETW 378 (675)
Q Consensus 300 vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w 378 (675)
||||+..++. ..+....|+++.|++++||+||+++|+... +.+++.+++++|+++|+|+|||++++|++|++++..+|
T Consensus 329 iTTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W 407 (1153)
T PLN03210 329 VITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDW 407 (1153)
T ss_pred EEeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHH
Confidence 9999999875 355678999999999999999999998543 44567889999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHH
Q 005834 379 KYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARS 458 (675)
Q Consensus 379 ~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~ 458 (675)
+.+++++.... +..+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+....
T Consensus 408 ~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~--------- 468 (1153)
T PLN03210 408 MDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV--------- 468 (1153)
T ss_pred HHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------
Confidence 99999987532 4578999999999998744899999999999886443 4667887764321
Q ss_pred HHHHHHHHHHHhccccCCCCCCcccccHHHHHHHHHHhhhcc-------cccccCccchhhhhh-hcccCCCeEEecCCC
Q 005834 459 TVHTLISKLKSSCLLLDGDAEDEVKMHDVIRVVAVSIAKEEL-------MFNIPNVADLDKKME-ETVQEGPIAISLPYR 530 (675)
Q Consensus 459 ~~~~~~~~L~~~~l~~~~~~~~~~~mHdlv~~~a~~~~~~e~-------~~~~~~~~~~~~~~~-~~~~~~~~~lsl~~~ 530 (675)
...++.|+++||++.. .++++|||++|++|+.++.++. +.. +..++..... .....+++.+++...
T Consensus 469 --~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~--~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 --NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLV--DAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred --hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEe--CHHHHHHHHHhCcccceeeEEEeccC
Confidence 1237789999999765 3579999999999999987652 221 1111111111 112455677766544
Q ss_pred CCccCC----CCcCCCccceeEecccc-----------------------------CcccccchhhhcCCCCccEEEecC
Q 005834 531 GIQVLP----ERLQCPRLELLLLLEKG-----------------------------GGSMPISDHFFDGTEGLRVLNFTG 577 (675)
Q Consensus 531 ~~~~~~----~~~~~~~L~~L~l~~~~-----------------------------~~~~~~~~~~~~~l~~L~~L~l~~ 577 (675)
.+..+. .+..+++|+.|.+..+. ......|.. + .+.+|+.|++++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQG 620 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcC
Confidence 443211 11245555555553221 001112222 1 357888899998
Q ss_pred CCCCCCccccccccCCCEEEecccc-CCCcccccCCCCCcEEEeeCC-CCCccchhhcCCCCCCEecCcCcccCcccchh
Q 005834 578 IHFSSLPSSLGRLINLQTLCLEYCR-LKDIVIVGQLKKLEILSFRGS-DIERLPLEFGQLTRLQLLDLSNCRRLEVITPN 655 (675)
Q Consensus 578 ~~~~~lp~~i~~L~~L~~L~l~~~~-l~~~~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 655 (675)
+.+..+|.++..+++|++|+|++|. +..++.++.+++|++|+|++| .+.++|..+++|++|+.|++++|..+..+|..
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 8888888888999999999999886 566667899999999999997 57899999999999999999999999999986
Q ss_pred hhhccCCccCEEeCcCCCC
Q 005834 656 VICQSWLHLEVFGMAASRR 674 (675)
Q Consensus 656 ~~~~~L~~L~~L~l~~c~~ 674 (675)
+ ++++|++|++++|+.
T Consensus 701 i---~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 701 I---NLKSLYRLNLSGCSR 716 (1153)
T ss_pred C---CCCCCCEEeCCCCCC
Confidence 5 499999999999975
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.8e-45 Score=372.91 Aligned_cols=277 Identities=30% Similarity=0.555 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-
Q 005834 164 RKKVFQDVLEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE- 240 (675)
Q Consensus 164 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 240 (675)
|+.++++|.++|.+ ++.++|+|+|+||+||||||+.++++...+.+|+.++|+.++...+...++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 789999999999999999999999997788899999999999999999999999999988743
Q ss_pred --cCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHHhhhcCCcceE
Q 005834 241 --LNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEI 318 (675)
Q Consensus 241 --~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~~~~~~~~ 318 (675)
...+..+....+.+.|.+ +++||||||||+...|+.+...++. ...|++||||||+..++.........+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~~~~~~l~~~~~~-------~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKD-KRCLLVLDDVWDEEDLEELREPLPS-------FSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SHHHH-------HC-------HHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccchhhhcc-ccceeeeeeeccccccccccccccc-------ccccccccccccccccccccccccccc
Confidence 245667788889998886 6999999999999999888777765 677999999999998875444447899
Q ss_pred ecCCCCHHHHHHHHHHHhCCCC--CCCCchHHHHHHHHHhCCChhHHHHHHHHHhcC-ChHHHHHHHHHHhhcchhhccc
Q 005834 319 QIDALSKEEALHLFQKIVGDSM--KTSAFQPIAHEIVGRCGELPVALITLAKALKNM-SLETWKYVLRQLRSSYAKEIDG 395 (675)
Q Consensus 319 ~l~~L~~~e~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~-~~~~w~~~l~~l~~~~~~~~~~ 395 (675)
++++|+++||++||++.++... ..+.+++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++...... ..+
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999998443 455667899999999999999999999999743 789999999987765532 222
Q ss_pred hhHHHHHHHhhcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCC
Q 005834 396 MEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNV 450 (675)
Q Consensus 396 ~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~ 450 (675)
....+..++.+||+.||++ +|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 232 ~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 4688999999999999997 99999999999999999999999999999999753
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.1e-15 Score=131.68 Aligned_cols=148 Identities=24% Similarity=0.313 Sum_probs=95.0
Q ss_pred cCCCeEEecCCCCCccCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 597 (675)
...+.++.++.|.++.+|.. .++.+|+.|+++.|.....+. .+++++.||.|+++-|++..+|..+|.++-|++|+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~---~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPT---SISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcCh---hhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34566777777777655443 477777777776555433332 25667777777777777777777777777777777
Q ss_pred eccccCCC---cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 598 LEYCRLKD---IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 598 l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|.+|++.+ |.++..+..|+-|+|+.|++.-+|.++++|++|+.|.++.|. +-.+|..++. |+.|++|+++|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~--lt~lrelhiqgn 183 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGD--LTRLRELHIQGN 183 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHH--HHHHHHHhcccc
Confidence 77777654 555555566666666666666666666666666666666655 4456666554 666666666554
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.44 E-value=8.6e-12 Score=148.34 Aligned_cols=295 Identities=14% Similarity=0.168 Sum_probs=179.5
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC-CCCCHHHHHHHHHHHhC
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT-ENPDHQKIQDKLASDLG 236 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~ 236 (675)
...++-|...++.+-+ ....+++.|+|++|.||||++..+... ++.++|+++. .+.++..+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3456677766555543 245789999999999999999998853 2368999996 44566777777777774
Q ss_pred CCccc-------------CcCHHHHHHHHHHHHhc-cCeEEEEecCcccccccccccCCCCcccccccc-CCCCeEEEEe
Q 005834 237 IKFEL-------------NESIFDRANRLCRVLKN-EERHLIILDNIWGELKFDEVGIPSGDVKKERMD-DQRRCTIILT 301 (675)
Q Consensus 237 ~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ilvT 301 (675)
..... ..........+...+.. +.+++|||||+....+- . ....+..++. ...+.++|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~-~----~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNP-E----IHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCCh-H----HHHHHHHHHHhCCCCeEEEEE
Confidence 21110 01222334445555543 57899999999554210 0 0001111111 3456788899
Q ss_pred ccchhHH--hhhcCCcceEecC----CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCCh
Q 005834 302 SRRQDLL--RNVMNSQKEIQID----ALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSL 375 (675)
Q Consensus 302 tR~~~va--~~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~ 375 (675)
||..... ...........+. +|+.+|+..+|....+... -.+...+|.+.|+|+|+++..++..+.....
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 9984211 0011122345555 9999999999988765332 2346789999999999999999887764321
Q ss_pred HHHHHHHHHHhhcchhhccchhHHHHHHHh-hcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChH
Q 005834 376 ETWKYVLRQLRSSYAKEIDGMEKNVYLSLK-LSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPE 454 (675)
Q Consensus 376 ~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~-~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~ 454 (675)
. .......+... ....+...+. -.++.||++ .+.++...|+++ . ++.+.+-.. . + ..
T Consensus 235 ~-~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~-~--~~~~l~~~l------~-~---~~ 292 (903)
T PRK04841 235 S-LHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR-S--MNDALIVRV------T-G---EE 292 (903)
T ss_pred c-hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc-c--CCHHHHHHH------c-C---CC
Confidence 0 01111111100 0122333332 237799998 999999999997 3 443322211 1 1 11
Q ss_pred HHHHHHHHHHHHHHHhccccC-C-CCCCcccccHHHHHHHHHHh
Q 005834 455 EARSTVHTLISKLKSSCLLLD-G-DAEDEVKMHDVIRVVAVSIA 496 (675)
Q Consensus 455 ~~~~~~~~~~~~L~~~~l~~~-~-~~~~~~~mHdlv~~~a~~~~ 496 (675)
+ ....+++|...+++.. . +....|+.|+++++++....
T Consensus 293 ~----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 293 N----GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred c----HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1 2456888888888653 2 23457999999999998875
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.30 E-value=4.5e-10 Score=113.43 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=117.8
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHH---
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLC--- 253 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 253 (675)
....+++.|+|.+|+||||+++.+++...... + ...|+ +....+..+++..|+..++.+.. ..........+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHH
Confidence 34456899999999999999999998876321 1 22333 33345778899999999987654 233333333333
Q ss_pred -HHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccchhHHh--------hhcCCcceEecCC
Q 005834 254 -RVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLR--------NVMNSQKEIQIDA 322 (675)
Q Consensus 254 -~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~--------~~~~~~~~~~l~~ 322 (675)
.....+++.++|+||++... .++.+... ... .........|++|........ ........+.+++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l-~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRML-SNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHH-hCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 33335678999999998753 23332111 000 000223345566655432110 0011134678999
Q ss_pred CCHHHHHHHHHHHhCCCC---CCCCchHHHHHHHHHhCCChhHHHHHHHHH
Q 005834 323 LSKEEALHLFQKIVGDSM---KTSAFQPIAHEIVGRCGELPVALITLAKAL 370 (675)
Q Consensus 323 L~~~e~~~Lf~~~~~~~~---~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 370 (675)
|+.+|..+++...+.... ...-..+..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999988764221 122345789999999999999999999887
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=1.1e-09 Score=117.26 Aligned_cols=293 Identities=16% Similarity=0.115 Sum_probs=169.4
Q ss_pred ccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
+..++||++++++|...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568899999999998874 344567889999999999999999998865432345677777777788899999999
Q ss_pred HhCCC-cc-cCcCHHHHHHHHHHHHhc-cCeEEEEecCccccc---ccccccCCCCccccccccCCCC--eEEEEeccch
Q 005834 234 DLGIK-FE-LNESIFDRANRLCRVLKN-EERHLIILDNIWGEL---KFDEVGIPSGDVKKERMDDQRR--CTIILTSRRQ 305 (675)
Q Consensus 234 ~l~~~-~~-~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~~--s~ilvTtR~~ 305 (675)
++... .+ ...+..+....+.+.+.. +++.+||||+++... ..+.+. .+.. .+....+ ..+|.++...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~-~l~~----~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLY-SLLR----AHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHH-HHHH----hhhccCCCeEEEEEEECCc
Confidence 98752 21 122445666777777763 456899999997643 111111 0000 0011222 2355555543
Q ss_pred hHHhh------hcCCcceEecCCCCHHHHHHHHHHHhCCCC-CCCCchHHHHHHHHHh----CCChhHHHHHHHHHh---
Q 005834 306 DLLRN------VMNSQKEIQIDALSKEEALHLFQKIVGDSM-KTSAFQPIAHEIVGRC----GELPVALITLAKALK--- 371 (675)
Q Consensus 306 ~va~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c----~GlPLai~~~~~~L~--- 371 (675)
.+... ..-....+.+++++.++..+++..++.... ...--.+..+.|++.+ |..+.|+.++-....
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 32211 011134789999999999999998764211 1111223445555554 456777777654332
Q ss_pred --cC---ChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcC-cCC-CCccchhhHHHH--HH
Q 005834 372 --NM---SLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGL-FSE-GHAIPVSSLLRY--GM 442 (675)
Q Consensus 372 --~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~-fp~-~~~i~~~~Li~~--W~ 442 (675)
+. +.+....+.+.+. .....-.+..||.+ .|..+..++- ... ...+....+... .+
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l 328 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKEL 328 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 11 4555555555431 11233457788886 4444333331 221 123555555432 22
Q ss_pred hcccccCCCChHHHHHHHHHHHHHHHHhcccc
Q 005834 443 GMGYFRNVYTPEEARSTVHTLISKLKSSCLLL 474 (675)
Q Consensus 443 aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~ 474 (675)
++.+-.. .-....+.++++.|...+++.
T Consensus 329 ~~~~~~~----~~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 329 CEELGYE----PRTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHcCCC----cCcHHHHHHHHHHHHhcCCeE
Confidence 2211000 112345667888888888885
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.27 E-value=4.7e-13 Score=138.68 Aligned_cols=147 Identities=22% Similarity=0.285 Sum_probs=124.1
Q ss_pred cCCCeEEecCCCCCccCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 597 (675)
..++.|+++..|.+..+... ..+|.||++++-.|+.....+|.++| .+.-|.+|||+.|.++..|..+..-+++-+|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 56788999998888766544 48999999999888877888888865 59999999999999999999999999999999
Q ss_pred eccccCCC-ccc-ccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCccc----CcccchhhhhccCCccCEEeCcC
Q 005834 598 LEYCRLKD-IVI-VGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRR----LEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 598 l~~~~l~~-~~~-i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~----l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
|++|+|.. |.+ +-+|.-|-+|||++|++..||+.+..|.+|++|.|++|+- +..+| .+++|++|++++
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP------smtsL~vLhms~ 206 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP------SMTSLSVLHMSN 206 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc------cchhhhhhhccc
Confidence 99999988 654 4589999999999999999999999999999999999872 33344 266777777765
Q ss_pred C
Q 005834 672 S 672 (675)
Q Consensus 672 c 672 (675)
.
T Consensus 207 T 207 (1255)
T KOG0444|consen 207 T 207 (1255)
T ss_pred c
Confidence 4
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.26 E-value=3.8e-10 Score=122.66 Aligned_cols=298 Identities=17% Similarity=0.166 Sum_probs=189.4
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASD 234 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~ 234 (675)
..+...+-|...++.+.+ ..+.+.+.|..++|.||||++..++..... =..+.|.++.+. .++..+...++..
T Consensus 16 ~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHH
Confidence 334455667655544443 347899999999999999999999873332 356899998754 5788898888888
Q ss_pred hCCCccc-------------CcCHHHHHHHHHHHHhc-cCeEEEEecCcccccc--cc-cccCCCCccccccccCCCCeE
Q 005834 235 LGIKFEL-------------NESIFDRANRLCRVLKN-EERHLIILDNIWGELK--FD-EVGIPSGDVKKERMDDQRRCT 297 (675)
Q Consensus 235 l~~~~~~-------------~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~--~~-~~~~~~~~~~~~~~~~~~~s~ 297 (675)
++.-.+. ..+.......+...+.. .++..+||||..-..+ .. .+...+.. ...+-.
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~-------~P~~l~ 162 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH-------APENLT 162 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh-------CCCCeE
Confidence 8633221 12233344445544442 3688999999743321 11 11111111 456888
Q ss_pred EEEeccchhHHh--hhcCCcceEecC----CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 298 IILTSRRQDLLR--NVMNSQKEIQID----ALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 298 ilvTtR~~~va~--~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
.+||||+..-.. ...-....+++. .|+.+|+-++|....+...+ +.-.+.+.+..+|.+-|+..++=.++
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 999999974311 001112233333 58999999999887643332 33578999999999999999998888
Q ss_pred c-CChHHHHHHHHHHhhcchhhccchhHHHHH-HHhhcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccC
Q 005834 372 N-MSLETWKYVLRQLRSSYAKEIDGMEKNVYL-SLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRN 449 (675)
Q Consensus 372 ~-~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~ 449 (675)
+ .+.+.-...+... .+.+.. ...--++.||++ ++..++-||+++.= -..|+..-.+
T Consensus 239 ~~~~~~q~~~~LsG~-----------~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f----~~eL~~~Ltg------ 296 (894)
T COG2909 239 NNTSAEQSLRGLSGA-----------ASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRF----NDELCNALTG------ 296 (894)
T ss_pred CCCcHHHHhhhccch-----------HHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHh----hHHHHHHHhc------
Confidence 3 2433333322211 111111 122246789998 99999999999842 1333332211
Q ss_pred CCChHHHHHHHHHHHHHHHHhccccC--CCCCCcccccHHHHHHHHHHhhhc
Q 005834 450 VYTPEEARSTVHTLISKLKSSCLLLD--GDAEDEVKMHDVIRVVAVSIAKEE 499 (675)
Q Consensus 450 ~~~~~~~~~~~~~~~~~L~~~~l~~~--~~~~~~~~mHdlv~~~a~~~~~~e 499 (675)
+..+..++++|.+++++.. .+....|+.|.+..||.......+
T Consensus 297 -------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 297 -------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred -------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 1234557899999999852 356778999999999998876653
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.26 E-value=2.4e-11 Score=119.95 Aligned_cols=201 Identities=23% Similarity=0.351 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH---------
Q 005834 161 FDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL--------- 231 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--------- 231 (675)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 689999999999999877788999999999999999999999885321 1 3344444333322 222222
Q ss_pred -HHHhCCCc----------ccCcCHHHHHHHHHHHHhc-cCeEEEEecCccccc-ccc---cccCCCCccccccccCCCC
Q 005834 232 -ASDLGIKF----------ELNESIFDRANRLCRVLKN-EERHLIILDNIWGEL-KFD---EVGIPSGDVKKERMDDQRR 295 (675)
Q Consensus 232 -~~~l~~~~----------~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 295 (675)
...++... ............+.+.+.. +++.+||+||+.... ... .+...+...+.... ....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCC
Confidence 11121110 0012223444555555543 346999999996655 111 11111111111111 2334
Q ss_pred eEEEEeccchhHHhh-------hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 296 CTIILTSRRQDLLRN-------VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 296 s~ilvTtR~~~va~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
..+++++.+...... ..+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 444455444333221 2334456999999999999999997654411122356679999999999988764
No 11
>PF05729 NACHT: NACHT domain
Probab=99.21 E-value=8.4e-11 Score=109.32 Aligned_cols=151 Identities=21% Similarity=0.324 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCcccCcCHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKL----FDKVAMAEVTENPDHQ---KIQDKLASDLGIKFELNESIFDRANRLC 253 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 253 (675)
+++.|+|.+|+||||+++.++........ +...+|+..+...... .+...|..+...... . ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~---~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---P---IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---h---hHHHHH
Confidence 58899999999999999999998876543 3467777776544332 344444444332211 1 111333
Q ss_pred HHHhccCeEEEEecCcccccccccc--cCCCCccccccccC--CCCeEEEEeccchhH--HhhhcCCcceEecCCCCHHH
Q 005834 254 RVLKNEERHLIILDNIWGELKFDEV--GIPSGDVKKERMDD--QRRCTIILTSRRQDL--LRNVMNSQKEIQIDALSKEE 327 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~~~~~~~~~--~~~~~~~~~~~~~~--~~~s~ilvTtR~~~v--a~~~~~~~~~~~l~~L~~~e 327 (675)
..+...++++||+|++++...-... ...+.+.+..++.. .++++++||+|.... ..........+.+.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 3444568999999999765431110 01111222223333 578999999999876 23334455689999999999
Q ss_pred HHHHHHHHhC
Q 005834 328 ALHLFQKIVG 337 (675)
Q Consensus 328 ~~~Lf~~~~~ 337 (675)
..+++.+++.
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=5.9e-09 Score=110.33 Aligned_cols=297 Identities=15% Similarity=0.134 Sum_probs=166.6
Q ss_pred ccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CC---CeEEEEEeCCCCCHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK-LF---DKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~~~~ 229 (675)
++.++||++++++|..++. ......+.|+|++|+|||++++.+++...... .. -..+|+.+....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3468899999999999886 34456899999999999999999999765321 11 2466788777778889999
Q ss_pred HHHHHh---CCCccc-CcCHHHHHHHHHHHHh-ccCeEEEEecCccccc-ccccccCCCCccccccccC--CCCeEEEEe
Q 005834 230 KLASDL---GIKFEL-NESIFDRANRLCRVLK-NEERHLIILDNIWGEL-KFDEVGIPSGDVKKERMDD--QRRCTIILT 301 (675)
Q Consensus 230 ~i~~~l---~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~-~~~~~~~~~~~~~~~~~~~--~~~s~ilvT 301 (675)
.|++++ +...+. ..+..+....+.+.+. .+++++||||+++... ..+.+...+..... ... +....+|++
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~--~~~~~~~~v~lI~i 171 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARS--NGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccc--ccCCCCCeEEEEEE
Confidence 999988 333221 2234455566666664 3467899999997662 11111101000000 001 123344444
Q ss_pred ccchhHHh----hhcCC--cceEecCCCCHHHHHHHHHHHhCC----CCCCCCchHHHHHHHHHhCCChhHH-HHHHHHH
Q 005834 302 SRRQDLLR----NVMNS--QKEIQIDALSKEEALHLFQKIVGD----SMKTSAFQPIAHEIVGRCGELPVAL-ITLAKAL 370 (675)
Q Consensus 302 tR~~~va~----~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~l~~~~~~I~~~c~GlPLai-~~~~~~L 370 (675)
|....... ..... ...+.+++.+.++..+++..++.. ..-.++..+...+++....|.|-.+ ..+-...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43332211 11111 246899999999999999988741 1112222234455666777888443 3332222
Q ss_pred h-----c---CChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCc--CCCCccchhhHHHH
Q 005834 371 K-----N---MSLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLF--SEGHAIPVSSLLRY 440 (675)
Q Consensus 371 ~-----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f--p~~~~i~~~~Li~~ 440 (675)
. + .+.+....+.+.+. .....-++..||.+ .+..+..++.. .++..+....+...
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 1 1 14444444444321 11223456678876 55444443311 13334666666653
Q ss_pred HH--hcccccCCCChHHHHHHHHHHHHHHHHhccccC
Q 005834 441 GM--GMGYFRNVYTPEEARSTVHTLISKLKSSCLLLD 475 (675)
Q Consensus 441 W~--aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 475 (675)
+- ++.+ . ...-....+.++++.|...|++..
T Consensus 317 y~~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 317 YKEVCEDI-G---VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 31 1111 0 011223566778888888898853
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.21 E-value=9.7e-13 Score=115.12 Aligned_cols=134 Identities=23% Similarity=0.344 Sum_probs=115.1
Q ss_pred ccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccccC
Q 005834 533 QVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQ 611 (675)
Q Consensus 533 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~ 611 (675)
..++....+++...|.++.|.... +|++ +..+.+|.+|++++|.++.+|.+|++|+.|+.|++..|++.. |..+|.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~--vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTV--VPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCceee--cCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345555677788888886655332 3333 678999999999999999999999999999999999999887 899999
Q ss_pred CCCCcEEEeeCCCCC--ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 612 LKKLEILSFRGSDIE--RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 612 l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++-|+.|||..|++. .+|..|..++.|+.|+++.|. .+.+|+.++. |++||.|.+.+.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~--lt~lqil~lrdn 160 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGK--LTNLQILSLRDN 160 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhh--hcceeEEeeccC
Confidence 999999999999876 799999999999999999987 8999999875 999999988754
No 14
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.18 E-value=7.9e-11 Score=141.02 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=74.1
Q ss_pred CCeEEecCCCCCc-cCCC-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCccccccccCCCEEE
Q 005834 521 GPIAISLPYRGIQ-VLPE-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGRLINLQTLC 597 (675)
Q Consensus 521 ~~~~lsl~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~ 597 (675)
.++.+.+.+|.+. .+|. ...+++|+.|++.++.... .. +..+.++++|++|++++|.+. .+|..++.+++|++|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KI-PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cC-ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 3444444444443 2222 1244555555554332110 11 122445555555555555554 3455555555555555
Q ss_pred eccccCCC--cccccCCCCCcEEEeeCCCCC-ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 598 LEYCRLKD--IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 598 l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+++|.+.. |..++++++|++|++++|.+. .+|..++++++|+.|++++|.....+|..+. ++++|++|++++|
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n 294 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDN 294 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh--hccCcCEEECcCC
Confidence 55555443 445555556666666555544 4555556666666666665553344554443 3666666666555
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=1.7e-10 Score=138.25 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=79.1
Q ss_pred cCCCeEEecCCCCCc-cCCCCc--CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCccccccccCCC
Q 005834 519 QEGPIAISLPYRGIQ-VLPERL--QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~ 594 (675)
...++.|.+.+|.+. .+|... .+++|+.|++++|.... .+| ...+++|++|++++|.+. .+|..++.+++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccC---ccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 456788888888775 455432 67888888886554211 111 123445555555555554 3455555555555
Q ss_pred EEEeccccCCC--cccccCCCCCcEEEeeCCCCC-ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
+|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..+. ++++|++|++++
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~ 245 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVY 245 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcC
Confidence 55555555433 445555555555555555443 3455555555555555555443333444332 255555555544
Q ss_pred C
Q 005834 672 S 672 (675)
Q Consensus 672 c 672 (675)
|
T Consensus 246 n 246 (968)
T PLN00113 246 N 246 (968)
T ss_pred c
Confidence 4
No 16
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=2.2e-08 Score=103.05 Aligned_cols=274 Identities=15% Similarity=0.114 Sum_probs=149.0
Q ss_pred ccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
...|+|+++.++.+..++. ......+.++|++|+|||+||+.+++..... + ..+..+......++ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 4578999999999988886 3445678899999999999999999987532 2 12222111122222 2223
Q ss_pred HHhCCCccc-----CcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhH
Q 005834 233 SDLGIKFEL-----NESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL 307 (675)
Q Consensus 233 ~~l~~~~~~-----~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (675)
..++...-. ..-.......+...+.+ .+..+|+|+..+...+... ..+.+-|..||+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~-~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMED-FRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAGML 142 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhh-hheeeeeccCccccceeec-------------CCCeEEEEecCCcccc
Confidence 333221100 00001122334444443 4455666665544433321 2234556677776544
Q ss_pred HhhhcC-CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHHHHh
Q 005834 308 LRNVMN-SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQLR 386 (675)
Q Consensus 308 a~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~ 386 (675)
...... ....+.+++++.++..+++.+.+.... ..--.+....|++.|+|.|-.+..++..+. ..... ..
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~~-~~ 213 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQV-RG 213 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHHH-cC
Confidence 321111 235789999999999999998876321 222356788999999999976655554321 11000 00
Q ss_pred hcchhhccchhHHHHHHHhhcccccCChhHHHHHH-HhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHHHHHHHHH
Q 005834 387 SSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFL-LCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARSTVHTLIS 465 (675)
Q Consensus 387 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~ 465 (675)
.... . ...-......+...|..++++ .+..+. ..+.++.+ .+..+.+.... |- + .......+.
T Consensus 214 ~~~i-t-~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g~-----~----~~~~~~~~e 277 (305)
T TIGR00635 214 QKII-N-RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---GE-----D----ADTIEDVYE 277 (305)
T ss_pred CCCc-C-HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---CC-----C----cchHHHhhh
Confidence 0000 0 001112223356678888887 566555 55666643 35554443321 11 1 112334566
Q ss_pred -HHHHhccccCC
Q 005834 466 -KLKSSCLLLDG 476 (675)
Q Consensus 466 -~L~~~~l~~~~ 476 (675)
.|++.+++...
T Consensus 278 ~~Li~~~li~~~ 289 (305)
T TIGR00635 278 PYLLQIGFLQRT 289 (305)
T ss_pred HHHHHcCCcccC
Confidence 58889999643
No 17
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.03 E-value=2.1e-08 Score=103.92 Aligned_cols=277 Identities=14% Similarity=0.102 Sum_probs=149.1
Q ss_pred ccCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
|.....|+|+++.++.+..++. ......+.|+|++|+|||++|+.+++..... + .++..+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 4456789999999998877765 2345688999999999999999999987632 1 1222211 11122223
Q ss_pred HHHHHhCCCccc---C-cC-HHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccc
Q 005834 230 KLASDLGIKFEL---N-ES-IFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRR 304 (675)
Q Consensus 230 ~i~~~l~~~~~~---~-~~-~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (675)
.++..++...-. + .. .......+...+.. .+..+|+|+..+...+.. . -.+.+-|..|++.
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~-~~~~~~l~~~~~~~~~~~---~----------l~~~~li~at~~~ 160 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMED-FRLDIMIGKGPAARSIRL---D----------LPPFTLIGATTRA 160 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHh-cceeeeeccCccccceee---c----------CCCceEEeecCCc
Confidence 333333211100 0 00 00111222233332 344555555433322111 0 1224556667775
Q ss_pred hhHHhhhcC-CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHH
Q 005834 305 QDLLRNVMN-SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLR 383 (675)
Q Consensus 305 ~~va~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~ 383 (675)
..+...... ....+++++++.++..+++.+.+.... ..--.+....|++.|+|.|-.+..+...+. .|.....
T Consensus 161 ~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~ 234 (328)
T PRK00080 161 GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG 234 (328)
T ss_pred ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC
Confidence 443221111 235789999999999999998876432 222346789999999999965555544332 1111100
Q ss_pred HHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHH-HhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHHHHHH
Q 005834 384 QLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFL-LCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARSTVHT 462 (675)
Q Consensus 384 ~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~ 462 (675)
.... . ...-......+...+..|++. .+..+. ....|+.+ .+..+.+.... | .+ .. ...+
T Consensus 235 ---~~~I-~-~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~~---~~----~~~~ 295 (328)
T PRK00080 235 ---DGVI-T-KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G--EE---RD----TIED 295 (328)
T ss_pred ---CCCC-C-HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C--CC---cc----hHHH
Confidence 0000 0 001123344567778888877 666664 66777765 36666654322 1 11 11 2222
Q ss_pred HHH-HHHHhccccCC
Q 005834 463 LIS-KLKSSCLLLDG 476 (675)
Q Consensus 463 ~~~-~L~~~~l~~~~ 476 (675)
.+. .|++.+|++..
T Consensus 296 ~~e~~Li~~~li~~~ 310 (328)
T PRK00080 296 VYEPYLIQQGFIQRT 310 (328)
T ss_pred HhhHHHHHcCCcccC
Confidence 445 68888998644
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.01 E-value=2.6e-11 Score=126.02 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=104.2
Q ss_pred CCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 520 EGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
.+++.+.++.|++..+|+-. .+++|+.|++++|........ .....+|..|+++.|.++.+|+.++.|+.|+.|.+
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~---~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT---EGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc---HHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence 45566667777777666644 677777777766654433332 23345677777777777777777777777777777
Q ss_pred ccccCCC---cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCCCC
Q 005834 599 EYCRLKD---IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASRRV 675 (675)
Q Consensus 599 ~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~~i 675 (675)
.+|++.. |+.||+|.+|+.+...+|.+.-.|.+++.+.+|+.|.|+.|. +-.+|..+-- |+.|..|++..+|++
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHl--L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHL--LPDLKVLDLRENPNL 375 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhh--cCCcceeeccCCcCc
Confidence 7776543 667777777777777777777777777777777777777765 6667776653 777777777777664
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.97 E-value=7.3e-11 Score=116.86 Aligned_cols=150 Identities=23% Similarity=0.317 Sum_probs=99.3
Q ss_pred cCCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 597 (675)
..-+..+.++.|.+.++|... .++.+.+..+..++ ...+++.+++.+++|..|++++|.+..+|..++.+..||.|+
T Consensus 387 ~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn--~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN--KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred hcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC--ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence 344777888888888887654 44555555553332 334555667888888888888888888888888888888888
Q ss_pred eccccCCC-cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++.|++.. |..+..++-|+++-.+.|++.++|.+ +.++.+|.+||+.+|. +..+|+.++ ++++|++|.+.|.|
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~Lg--nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILG--NMTNLRHLELDGNP 539 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhc--cccceeEEEecCCc
Confidence 88887766 55555555555555555666666543 6666666666666654 555665544 46666666666543
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=7.8e-10 Score=101.62 Aligned_cols=131 Identities=21% Similarity=0.184 Sum_probs=37.8
Q ss_pred cCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCc-ccc-cC
Q 005834 534 VLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDI-VIV-GQ 611 (675)
Q Consensus 534 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~-~~i-~~ 611 (675)
..+...++.+++.|.+.++......-. -..+.+|++|++++|.+++++ .+..|++|++|++++|+|+.. +.+ ..
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie~L---~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIENL---GATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -------------------------S-----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccccccccccch---hhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 333334445556666654443322211 113556666666666666654 466666666777766666663 233 24
Q ss_pred CCCCcEEEeeCCCCCccch--hhcCCCCCCEecCcCcccCcccc---hhhhhccCCccCEEeCc
Q 005834 612 LKKLEILSFRGSDIERLPL--EFGQLTRLQLLDLSNCRRLEVIT---PNVICQSWLHLEVFGMA 670 (675)
Q Consensus 612 l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp---~~~~~~~L~~L~~L~l~ 670 (675)
+++|++|++++|+|..+-. .+..+++|+.|++.+|+ +...+ .-++. .+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~-~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIY-KLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHH-H-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHH-HcChhheeCCE
Confidence 6666777776666554432 35566666777776666 22222 23344 56666666643
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.94 E-value=2e-10 Score=118.92 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEE
Q 005834 520 EGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTL 596 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L 596 (675)
.+..++.+..|.++.+... .+++.|+.|+++.|....... +.......|.+|+|+.|.++.+ +.++..|..|+.|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeec--chhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 3444444444444433322 144555555554443222211 1133344555555555555544 2334445555555
Q ss_pred EeccccCCCc--ccccCCCCCcEEEeeCCCCC----ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCc
Q 005834 597 CLEYCRLKDI--VIVGQLKKLEILSFRGSDIE----RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMA 670 (675)
Q Consensus 597 ~l~~~~l~~~--~~i~~l~~L~~L~l~~~~i~----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~ 670 (675)
+|+.|++..+ ..+..+.+|++|||++|.+. .-...+..|++|+.|++.+|. ++.+|...+. .|.+|++|+|.
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfs-gl~~LE~LdL~ 424 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFS-GLEALEHLDLG 424 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhc-cCcccceecCC
Confidence 5555554442 23444555555555555333 111124445555555555544 5555555444 45555555554
Q ss_pred CC
Q 005834 671 AS 672 (675)
Q Consensus 671 ~c 672 (675)
++
T Consensus 425 ~N 426 (873)
T KOG4194|consen 425 DN 426 (873)
T ss_pred CC
Confidence 43
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.94 E-value=3.4e-09 Score=127.60 Aligned_cols=107 Identities=21% Similarity=0.397 Sum_probs=76.8
Q ss_pred hcCCCCccEEEecCCC-CCCCccccccccCCCEEEecccc-CCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEe
Q 005834 564 FDGTEGLRVLNFTGIH-FSSLPSSLGRLINLQTLCLEYCR-LKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLL 641 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~-~~~lp~~i~~L~~L~~L~l~~~~-l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 641 (675)
+.++++|+.|++++|. +..+|..+ ++++|++|++++|. +..++. ...+|++|+|++|.++++|.++..+++|+.|
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L 874 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFL 874 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEE
Confidence 4455555555555542 44455444 45555566655554 222211 1357888888888899999999999999999
Q ss_pred cCcCcccCcccchhhhhccCCccCEEeCcCCCCC
Q 005834 642 DLSNCRRLEVITPNVICQSWLHLEVFGMAASRRV 675 (675)
Q Consensus 642 ~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~~i 675 (675)
++++|.++..+|..+. .+++|+.|++++|+++
T Consensus 875 ~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 875 DMNGCNNLQRVSLNIS--KLKHLETVDFSDCGAL 906 (1153)
T ss_pred ECCCCCCcCccCcccc--cccCCCeeecCCCccc
Confidence 9999999999998765 5999999999999865
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.5e-09 Score=98.26 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=57.0
Q ss_pred cCCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcccc-ccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSL-GRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~L~~L~~L 596 (675)
+.+.+.+++.++.+..+.... .+.+|+.|+++.|.....+. +..++.|+.|++++|.+++++..+ ..+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 446788999999998887655 57899999998776554432 667899999999999999987666 468999999
Q ss_pred EeccccCCC---cccccCCCCCcEEEeeCCCCCccch----hhcCCCCCCEecCcCc
Q 005834 597 CLEYCRLKD---IVIVGQLKKLEILSFRGSDIERLPL----EFGQLTRLQLLDLSNC 646 (675)
Q Consensus 597 ~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~ 646 (675)
.+++|+|.. ...+..+++|++|++.+|.++..+. -+..+++|+.||-...
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 999999876 5678889999999999999987665 3888999999997653
No 24
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.86 E-value=1.7e-07 Score=107.88 Aligned_cols=308 Identities=17% Similarity=0.213 Sum_probs=177.8
Q ss_pred cccHHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEeCCCCC---HHHHHHHHHH
Q 005834 161 FDSRKKVFQDVLEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED-KLFDKVAMAEVTENPD---HQKIQDKLAS 233 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~---~~~~~~~i~~ 233 (675)
++||+.+++.|...+. .+...++.+.|..|||||+|++.|......+ +.|-.-.+-....+.. ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 5799999999999887 4566799999999999999999999987654 1111111111112211 1223333333
Q ss_pred Hh-------------------CCCcc------------------c----CcCHHHH-----HHHHHHHHhccCeEEEEec
Q 005834 234 DL-------------------GIKFE------------------L----NESIFDR-----ANRLCRVLKNEERHLIILD 267 (675)
Q Consensus 234 ~l-------------------~~~~~------------------~----~~~~~~~-----~~~l~~~l~~~k~~LlVlD 267 (675)
++ +.... . +...... ...+.......++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 21100 0 0001111 1222333344579999999
Q ss_pred Cc-ccccccccccCCCCccccccccCCC-------CeEEEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCC
Q 005834 268 NI-WGELKFDEVGIPSGDVKKERMDDQR-------RCTIILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGD 338 (675)
Q Consensus 268 dv-~~~~~~~~~~~~~~~~~~~~~~~~~-------~s~ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (675)
|+ |-+.. .-+++..++...+ ..-.+.|.+.. ............+.|.||+..+...+.....+.
T Consensus 162 DlhWaD~~-------SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 162 DLHWADSA-------SLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred cccccChh-------HHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 99 32211 0011111111111 22233333333 112223345579999999999999999998865
Q ss_pred CCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcC-------ChHHHHHHHHHHhhcchhhccchhHHHHHHHhhccccc
Q 005834 339 SMKTSAFQPIAHEIVGRCGELPVALITLAKALKNM-------SLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLL 411 (675)
Q Consensus 339 ~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L 411 (675)
.. ....+..+.|+++..|+|+.+..+-+.+... +...|..-..++... +. .+.+...+..-.+.|
T Consensus 235 ~~--~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-----~~-~~~vv~~l~~rl~kL 306 (849)
T COG3899 235 TK--LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-----AT-TDAVVEFLAARLQKL 306 (849)
T ss_pred cc--cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-----hh-hHHHHHHHHHHHhcC
Confidence 32 2335678999999999999999999999742 344555433332221 11 223566688889999
Q ss_pred CChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHhccccC-----CC-CCCc--c-
Q 005834 412 GNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARSTVHTLISKLKSSCLLLD-----GD-AEDE--V- 482 (675)
Q Consensus 412 ~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~-----~~-~~~~--~- 482 (675)
|.. .+..+...|++-.. |+...|...|-. .....+..+.+.|....++.. .+ .... |
T Consensus 307 ~~~-t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~ 372 (849)
T COG3899 307 PGT-TREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYK 372 (849)
T ss_pred CHH-HHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHH
Confidence 998 89999999999644 677777665521 122233344454544444421 11 1111 2
Q ss_pred cccHHHHHHHHHHhh
Q 005834 483 KMHDVIRVVAVSIAK 497 (675)
Q Consensus 483 ~mHdlv~~~a~~~~~ 497 (675)
..|+.+++.|-..-.
T Consensus 373 F~H~~vqqaaY~~i~ 387 (849)
T COG3899 373 FLHDRVQQAAYNLIP 387 (849)
T ss_pred hhHHHHHHHHhccCc
Confidence 469999888866443
No 25
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.82 E-value=1.1e-07 Score=101.67 Aligned_cols=181 Identities=13% Similarity=0.178 Sum_probs=109.7
Q ss_pred cCccccccHHHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQD---VLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
.....|+|++..+.. +..++..+....+.++|++|+||||+|+.+++..... | +.++......+-++.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHHH
Confidence 445578899888666 7777777777888999999999999999999876532 2 22222211111111222
Q ss_pred HHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE--eccchh--
Q 005834 233 SDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL--TSRRQD-- 306 (675)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~-- 306 (675)
.........+++.+|++|+++... +.+.+...+ ..+..+++ ||.+..
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----------e~~~iilI~att~n~~~~ 134 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----------EDGTITLIGATTENPSFE 134 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----------hcCcEEEEEeCCCChhhh
Confidence 111112223477899999998653 222222111 12344444 344322
Q ss_pred HHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCC-CC-CCchHHHHHHHHHhCCChhHHHHHHHHH
Q 005834 307 LLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSM-KT-SAFQPIAHEIVGRCGELPVALITLAKAL 370 (675)
Q Consensus 307 va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~-~~l~~~~~~I~~~c~GlPLai~~~~~~L 370 (675)
+..........+.+.+++.++.+.++.+.+.... .. .-..+..+.|++.|+|.|..+..+....
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1122334457899999999999999998764311 11 2335678899999999997665554443
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.79 E-value=2.3e-10 Score=113.38 Aligned_cols=132 Identities=28% Similarity=0.360 Sum_probs=84.9
Q ss_pred CCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccc-cccCCCEEE
Q 005834 520 EGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLG-RLINLQTLC 597 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~-~L~~L~~L~ 597 (675)
....++....|.+..+|... .+.+|..|++..|.....+ + |.++..|..|+++.|.++.+|+.++ +|.+|.+|+
T Consensus 183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--e--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--E--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--C--CCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 34555555555555555433 5566666666544433332 1 5666677777777777777776665 677777777
Q ss_pred eccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhh
Q 005834 598 LEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVI 657 (675)
Q Consensus 598 l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~ 657 (675)
|+.|+++. |..++.|++|.+||+++|.|+.+|.++++| .|+.|-+.+|+ ++.+...++
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii 317 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREII 317 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHH
Confidence 77777776 667777777777777777777777777777 67777777766 555554444
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.74 E-value=1.9e-09 Score=117.77 Aligned_cols=108 Identities=27% Similarity=0.359 Sum_probs=88.8
Q ss_pred hcCCCCccEEEecCCCCCCCccc-cccccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEe
Q 005834 564 FDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLL 641 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 641 (675)
+.++++|++|+|++|++.++|++ +.+|..|+.|+|++|+++. |..+.++..|++|...+|.+..+| .+..++.|+.+
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVL 457 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEE
Confidence 67889999999999999988865 6788889999999999988 788899999999999999999999 78999999999
Q ss_pred cCcCcccCcccchhhhhccCCccCEEeCcCCCC
Q 005834 642 DLSNCRRLEVITPNVICQSWLHLEVFGMAASRR 674 (675)
Q Consensus 642 ~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~~ 674 (675)
|++.|. +..+-....- ..++|++|+++|+++
T Consensus 458 DlS~N~-L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 458 DLSCNN-LSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred ecccch-hhhhhhhhhC-CCcccceeeccCCcc
Confidence 999876 5443221111 236999999998874
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.74 E-value=7.3e-09 Score=107.55 Aligned_cols=146 Identities=21% Similarity=0.261 Sum_probs=81.1
Q ss_pred CCCeEEecCCCCCccCCCCcC-CCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEE
Q 005834 520 EGPIAISLPYRGIQVLPERLQ-CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLC 597 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~ 597 (675)
.++..+++..|.++.+|.... ..+|..|.+-.|...... ..-++.++.||+|||+.|.|+.+|.. +..=.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~--se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT--SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeecccccccc--HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 345555566666666665553 334666666444333222 22355566677777777766655432 33335667777
Q ss_pred eccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeC
Q 005834 598 LEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGM 669 (675)
Q Consensus 598 l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l 669 (675)
|++|+|+. ...+..|.+|.+|.|+.|.++.||. .|.+|++|+.|+|..|. ++.+....+. .|++|+.|.+
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFq-gL~Sl~nlkl 252 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQ-GLPSLQNLKL 252 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhc-Cchhhhhhhh
Confidence 77776666 3456666667777777777776665 34446667766666654 3333222222 3444444443
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.72 E-value=4.2e-08 Score=110.20 Aligned_cols=138 Identities=19% Similarity=0.230 Sum_probs=82.2
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcccccc----------
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGR---------- 589 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~---------- 589 (675)
..++.|.+++|.+..+|.. .++|+.|.+..|.... +|. ....|++|++++|+++.+|....+
T Consensus 302 ~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~--LP~----lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~ 373 (788)
T PRK15387 302 PGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTS--LPT----LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNR 373 (788)
T ss_pred cccceeECCCCccccCCCC--cccccccccccCcccc--ccc----cccccceEecCCCccCCCCCCCcccceehhhccc
Confidence 4577777777777665542 2344555553333221 111 113566666666666655532211
Q ss_pred -------ccCCCEEEeccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCC
Q 005834 590 -------LINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWL 662 (675)
Q Consensus 590 -------L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~ 662 (675)
..+|+.|++++|++..++.. ..+|+.|++++|.++.+|.. +.+|+.|++++|. +..+|..+. +++
T Consensus 374 L~~LP~l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~--~L~ 445 (788)
T PRK15387 374 LTSLPALPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPESLI--HLS 445 (788)
T ss_pred cccCcccccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccChHHh--hcc
Confidence 12466666666666652221 24677777777777777753 2457778888876 778888766 489
Q ss_pred ccCEEeCcCCC
Q 005834 663 HLEVFGMAASR 673 (675)
Q Consensus 663 ~L~~L~l~~c~ 673 (675)
+|+.|++++++
T Consensus 446 ~L~~LdLs~N~ 456 (788)
T PRK15387 446 SETTVNLEGNP 456 (788)
T ss_pred CCCeEECCCCC
Confidence 99999998875
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.6e-09 Score=103.51 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=107.8
Q ss_pred cCCCeEEecCCCCCccCCCCcC-CCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERLQ-CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 597 (675)
|.-+..+.+++|.++.+.++.+ .|++|.|+++.|....... +..+++|..|||++|.++++-..-..|-|.++|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN----LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh----hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 4456667788888888777664 6899999997776433322 6778999999999999987766667788999999
Q ss_pred eccccCCCcccccCCCCCcEEEeeCCCCCccch--hhcCCCCCCEecCcCcccCcccc
Q 005834 598 LEYCRLKDIVIVGQLKKLEILSFRGSDIERLPL--EFGQLTRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 598 l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp 653 (675)
|++|.+...+.+++|.+|.+||+++|+|.++.. .|++|+.|++|.+.+|+ +..+|
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 999999999999999999999999999997754 79999999999999998 66555
No 31
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=2.5e-07 Score=90.40 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=92.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
...+.+.++|.+|+|||+|++.+++....+ ...+.|+++.... . ....+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~---------------------~~~~~~~~~~ 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---Y---------------------FSPAVLENLE 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---h---------------------hhHHHHhhcc
Confidence 334678999999999999999999987644 3345677653210 0 0011222232
Q ss_pred ccCeEEEEecCcccc---ccccc-ccCCCCccccccccCCCCeEEEEeccch----------hHHhhhcCCcceEecCCC
Q 005834 258 NEERHLIILDNIWGE---LKFDE-VGIPSGDVKKERMDDQRRCTIILTSRRQ----------DLLRNVMNSQKEIQIDAL 323 (675)
Q Consensus 258 ~~k~~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~----------~va~~~~~~~~~~~l~~L 323 (675)
+.-+||+||+|.. ..|+. +...+.. . ...|+.+||+|.+. .+.. .+.....++++++
T Consensus 91 --~~dlLilDDi~~~~~~~~~~~~l~~l~n~----~--~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~p 161 (229)
T PRK06893 91 --QQDLVCLDDLQAVIGNEEWELAIFDLFNR----I--KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDL 161 (229)
T ss_pred --cCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCC
Confidence 2359999999874 23442 1111111 1 22355555544432 2222 2345678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 324 SKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 324 ~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
++++.++++++.+.... -.--+++.+-|++.+.|..-.+..+
T Consensus 162 d~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 162 TDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 99999999998886332 2223567778888888766444333
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.68 E-value=2.9e-06 Score=93.81 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=106.8
Q ss_pred ccccccHHHHHHHHHHHhc----cC-CccEEEEEcCCCCcHHHHHHHHHHHhhcc---CCCC--eEEEEEeCCCCCHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALK----DD-KLNIIGVYGMGGVGKTTLVKQVAKQVTED---KLFD--KVAMAEVTENPDHQKI 227 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~----~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~ 227 (675)
++.+.||++++++|...|. .. ...++.|+|.+|.|||+.++.|.+..... .... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 3456799999999988876 22 33577899999999999999999876432 1122 3667777777788889
Q ss_pred HHHHHHHhCCCcc-cCcCHHHHHHHHHHHHhc--cCeEEEEecCcccccc-ccc-ccCCCCccccccccCCCCeEEEE--
Q 005834 228 QDKLASDLGIKFE-LNESIFDRANRLCRVLKN--EERHLIILDNIWGELK-FDE-VGIPSGDVKKERMDDQRRCTIIL-- 300 (675)
Q Consensus 228 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~~-~~~-~~~~~~~~~~~~~~~~~~s~ilv-- 300 (675)
+..|.+++....+ ......+....+...+.. +...+||||+++.... -+. +...+. +....+++|+|
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR------~~~~s~SKLiLIG 907 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD------WPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH------HhhccCCeEEEEE
Confidence 9999988843332 122334556666666532 2345899999965421 001 100000 01223445443
Q ss_pred eccchhHH----hhhcC--CcceEecCCCCHHHHHHHHHHHhCC
Q 005834 301 TSRRQDLL----RNVMN--SQKEIQIDALSKEEALHLFQKIVGD 338 (675)
Q Consensus 301 TtR~~~va----~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (675)
+|...... ..... ....+..+|.+.++-.+++..++..
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 33221111 11101 1234677999999999999998863
No 33
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=4.3e-08 Score=110.71 Aligned_cols=137 Identities=19% Similarity=0.231 Sum_probs=69.1
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEec
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLE 599 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 599 (675)
..++.+.+.+|.+..+|... +++|+.|.+.+|... .+|..+ ...|+.|++++|.+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt--sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT--SIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc--cCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 34555666666665555432 245566655443322 222221 1235555555555555544432 245555555
Q ss_pred cccCCC-cccccCCCCCcEEEeeCCCCC---------------------ccchhhcCCCCCCEecCcCcccCcccchhhh
Q 005834 600 YCRLKD-IVIVGQLKKLEILSFRGSDIE---------------------RLPLEFGQLTRLQLLDLSNCRRLEVITPNVI 657 (675)
Q Consensus 600 ~~~l~~-~~~i~~l~~L~~L~l~~~~i~---------------------~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~ 657 (675)
+|++.. |..+. .+|++|++++|+++ .+|..+ .++|+.|++++|. +..+|..+
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~l- 344 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENA-LTSLPASL- 344 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCc-cccCChhh-
Confidence 554444 32222 24455555544444 444332 2467777777765 66676533
Q ss_pred hccCCccCEEeCcCCC
Q 005834 658 CQSWLHLEVFGMAASR 673 (675)
Q Consensus 658 ~~~L~~L~~L~l~~c~ 673 (675)
.++|+.|++++|.
T Consensus 345 ---~~sL~~L~Ls~N~ 357 (754)
T PRK15370 345 ---PPELQVLDVSKNQ 357 (754)
T ss_pred ---cCcccEEECCCCC
Confidence 3578888888763
No 34
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.7e-06 Score=95.13 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=115.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDK-------------------LFDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 214 (675)
+..+..++|.+..++.|.+++..+++ +.+.++|..|+||||+|+.+.+...-.. .|..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 44566789999999999999986664 4567999999999999999988764211 122233
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
++..+....+.++ +++++... ..-..++.-++|||++.... .++.+...+.. -
T Consensus 92 EIDAas~rgVDdI-ReLIe~a~-----------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-------P 146 (830)
T PRK07003 92 EMDAASNRGVDEM-AALLERAV-----------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------P 146 (830)
T ss_pred EecccccccHHHH-HHHHHHHH-----------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHh-------c
Confidence 3333322222221 11221111 00012345588899997664 24444332222 3
Q ss_pred CCCeEEEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh-hHHHHHHH
Q 005834 293 QRRCTIILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP-VALITLAK 368 (675)
Q Consensus 293 ~~~s~ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~ 368 (675)
..+.++|+||++. .+.....+....+++++++.++..+.+.+.+.... ..--.+....|++.++|.. -|+..+-.
T Consensus 147 P~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4467777666654 33333344557899999999999999988875322 1223567788999999866 45554333
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.63 E-value=6.1e-08 Score=109.50 Aligned_cols=136 Identities=22% Similarity=0.304 Sum_probs=78.2
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEec
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLE 599 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 599 (675)
..++.|.+++|.+..+|... .++|+.|++++|.... +|..+ ...|+.|++++|.++.+|..+. ++|++|+++
T Consensus 262 s~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~--LP~~l---p~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls 333 (754)
T PRK15370 262 SALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRT--LPAHL---PSGITHLNVQSNSLTALPETLP--PGLKTLEAG 333 (754)
T ss_pred CCCCEEECcCCccCcccccc-CCCCcEEECCCCcccc--Ccccc---hhhHHHHHhcCCccccCCcccc--ccceecccc
Confidence 34556666666665555422 2456666665443221 22211 1245666666666665554432 467777777
Q ss_pred cccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 600 YCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 600 ~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+|.++. |..+. ++|+.|++++|+++.+|..+. ++|+.|++++|. +..+|..+. .+|+.|++++|
T Consensus 334 ~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~----~sL~~LdLs~N 398 (754)
T PRK15370 334 ENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNA-LTNLPENLP----AALQIMQASRN 398 (754)
T ss_pred CCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCc-CCCCCHhHH----HHHHHHhhccC
Confidence 777665 44443 577777777777777776553 567777777775 666776543 24666666654
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.62 E-value=7.2e-07 Score=89.77 Aligned_cols=225 Identities=15% Similarity=0.195 Sum_probs=126.4
Q ss_pred ccCccccccHHHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVF---QDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 155 ~~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
|.....++|.+..+ .-|..++..+.+.-..+||++|+||||||+.+....... | ..+|...+-.+=++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHH
Confidence 34455667776554 234555667788888899999999999999999976533 3 3344333222222222
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE--eccchhH
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL--TSRRQDL 307 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v 307 (675)
+ +.-.+....+++.+|++|.|..-+ +-+.+ .|. -..|.-|+| ||-+...
T Consensus 93 ~-----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~---------vE~G~iilIGATTENPsF 145 (436)
T COG2256 93 I-----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPH---------VENGTIILIGATTENPSF 145 (436)
T ss_pred H-----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhh-hhh---------hcCCeEEEEeccCCCCCe
Confidence 2 222222333689999999996543 33333 222 345777776 4444321
Q ss_pred --HhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCC-----CC-CchHHHHHHHHHhCCChhHHHHHHHHHh---cC---
Q 005834 308 --LRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMK-----TS-AFQPIAHEIVGRCGELPVALITLAKALK---NM--- 373 (675)
Q Consensus 308 --a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-----~~-~l~~~~~~I~~~c~GlPLai~~~~~~L~---~~--- 373 (675)
-....+...++.+++|+.+|-.+++.+.+.+... .. --+++..-++..++|---++-...-... ..
T Consensus 146 ~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~ 225 (436)
T COG2256 146 ELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEV 225 (436)
T ss_pred eecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcc
Confidence 1223456679999999999999999985432111 11 1244777888899887644333322222 11
Q ss_pred -ChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCCh
Q 005834 374 -SLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNK 414 (675)
Q Consensus 374 -~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 414 (675)
..+..++++.+-......+- +...++..+|.-|...=+++
T Consensus 226 ~~~~~l~~~l~~~~~~~Dk~g-D~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 226 LILELLEEILQRRSARFDKDG-DAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred cCHHHHHHHHhhhhhccCCCc-chHHHHHHHHHHhhccCCcC
Confidence 23334444433211111111 12345666666666665554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=7.6e-08 Score=110.46 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=104.0
Q ss_pred CccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCC--CCCCccc-cccccCCCEEEecccc-CCC-c
Q 005834 532 IQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIH--FSSLPSS-LGRLINLQTLCLEYCR-LKD-I 606 (675)
Q Consensus 532 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~~-i~~L~~L~~L~l~~~~-l~~-~ 606 (675)
....|........|...+..+....... -...+.|+.|-+.+|. +..++.. +..+++|++|+|++|. +.. |
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccC----CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3345555566777888775544322221 1233479999998886 5555443 7789999999999986 666 9
Q ss_pred ccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 607 VIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 607 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
.+|++|-||+||+++++.+..||.++++|++|.+|++..+..+..+|. +.. .|++|++|.+...
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~-~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILL-ELQSLRVLRLPRS 652 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhh-hcccccEEEeecc
Confidence 999999999999999999999999999999999999999887777754 444 5999999998643
No 38
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=6.6e-08 Score=85.32 Aligned_cols=121 Identities=26% Similarity=0.283 Sum_probs=79.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
.+++.|.|+.|+||||++++++++.. ....+++++..+........ .+....+.+... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PDLLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hhhHHHHHHhhc-c
Confidence 47899999999999999999998876 23556777765542211000 001222233322 2
Q ss_pred CeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHHhh-----hcCCcceEecCCCCHHHH
Q 005834 260 ERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRN-----VMNSQKEIQIDALSKEEA 328 (675)
Q Consensus 260 k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~-----~~~~~~~~~l~~L~~~e~ 328 (675)
++.+++||++....+|......+.+ ..+..+|++|+.+...... ..+....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 5688999999888888775444433 5567899999987665421 233445889999998773
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1e-07 Score=106.98 Aligned_cols=103 Identities=20% Similarity=0.347 Sum_probs=65.1
Q ss_pred ccEEEecCCCCC-CCccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCC-ccchhhcCCCCCCEecCcC
Q 005834 570 LRVLNFTGIHFS-SLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLTRLQLLDLSN 645 (675)
Q Consensus 570 L~~L~l~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~ 645 (675)
+..|+|+++.+. .+|..++.|++|++|+|++|.+.. |..++.+++|++|+|++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666665 456666777777777777776654 556667777777777776665 5666677777777777776
Q ss_pred cccCcccchhhhhccCCccCEEeCcCCC
Q 005834 646 CRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 646 ~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|.....+|..+.. .+.++..+++.+++
T Consensus 500 N~l~g~iP~~l~~-~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGG-RLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhh-ccccCceEEecCCc
Confidence 6644556655543 33455556555443
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1.8e-07 Score=94.64 Aligned_cols=292 Identities=24% Similarity=0.273 Sum_probs=187.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF-DKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
..+.+.++|.|||||||++-.+.. .... | +.+.++....-.+...+.-.+...++...... +.....+...+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 357899999999999999999988 4433 7 56777888777788888888888787765421 223334555555
Q ss_pred ccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHHhhhcCCcceEecCCCCHH-HHHHHHHHHh
Q 005834 258 NEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKEIQIDALSKE-EALHLFQKIV 336 (675)
Q Consensus 258 ~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~ 336 (675)
. +|.++|+||...... .....+..+..+.+.-.|+.|+|.... ........+++|+.. ++.++|...+
T Consensus 87 ~-rr~llvldncehl~~------~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 87 D-RRALLVLDNCEHLLD------ACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred h-hhHHHHhcCcHHHHH------HHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHH
Confidence 4 789999999854421 011111112224555667888887532 344557777877755 7889988776
Q ss_pred CCCC----CCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHHH----HhhcchhhccchhHHHHHHHhhcc
Q 005834 337 GDSM----KTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQ----LRSSYAKEIDGMEKNVYLSLKLSY 408 (675)
Q Consensus 337 ~~~~----~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy 408 (675)
.... -...-.....+|.++.+|.|++|...++..+.....+-...++. +... ......-.......+.+||
T Consensus 156 ~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~ 234 (414)
T COG3903 156 VLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSY 234 (414)
T ss_pred HHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhh
Confidence 4111 12233567889999999999999999999997765554444333 1111 1111222456788899999
Q ss_pred cccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHhccccCC--CCCCcccccH
Q 005834 409 DLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARSTVHTLISKLKSSCLLLDG--DAEDEVKMHD 486 (675)
Q Consensus 409 ~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~mHd 486 (675)
.-|... .+-.|.-++.|...+.-. ...|.+-|-.. ..........+..+++.+++... .....|+.-+
T Consensus 235 ~lLtgw-e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~e 304 (414)
T COG3903 235 ALLTGW-ERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLE 304 (414)
T ss_pred HhhhhH-HHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHH
Confidence 999987 788899999998765322 23455444211 01111222344557778876432 2334677778
Q ss_pred HHHHHHHHHhhh
Q 005834 487 VIRVVAVSIAKE 498 (675)
Q Consensus 487 lv~~~a~~~~~~ 498 (675)
-+|.|+..+..+
T Consensus 305 T~r~YalaeL~r 316 (414)
T COG3903 305 TGRRYALAELHR 316 (414)
T ss_pred HHHHHHHHHHHh
Confidence 888888766543
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=5.2e-09 Score=108.46 Aligned_cols=146 Identities=25% Similarity=0.297 Sum_probs=110.3
Q ss_pred CeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccc
Q 005834 522 PIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 522 ~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~ 601 (675)
...+.+..|.+..+|.....--|+.|.+..|.....+.+ ++.+..|..||.+.|.+.++|..++.|..|+.|+++.|
T Consensus 123 lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~---ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 123 LTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE---IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred HHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc---cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 445556677777777777666788888876665544433 44678888899999988888888999999999999988
Q ss_pred cCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhh-ccCCccCEEeCcCC
Q 005834 602 RLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVIC-QSWLHLEVFGMAAS 672 (675)
Q Consensus 602 ~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~-~~L~~L~~L~l~~c 672 (675)
++.+ |+.++.| .|..||++.|++..+|-.|.+|+.|+.|.|.+|+ +..-|..+.. +...=.++|+...|
T Consensus 200 ~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 200 HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 8777 7777744 4888999999999999999999999999998888 7777766542 02333456666655
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=98.56 E-value=4.6e-06 Score=91.05 Aligned_cols=186 Identities=20% Similarity=0.232 Sum_probs=111.3
Q ss_pred ccCccccccHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ ++-++.++..+.. ....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHH
Confidence 44566788999999999998862 2267899999999999999999999874 33 2334444433322 2233
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc------cccccCCCCccccccccCCCCeEEEEeccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK------FDEVGIPSGDVKKERMDDQRRCTIILTSRR 304 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (675)
++....... .+...++-+||+|+++.... +..+... +. ..+..||+|+.+
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~--------l~-~~~~~iIli~n~ 139 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILEL--------IK-KAKQPIILTAND 139 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHH--------HH-cCCCCEEEeccC
Confidence 332221110 01112568999999976432 1111111 11 233445555543
Q ss_pred h-hHHh-hhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 305 Q-DLLR-NVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 305 ~-~va~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
. .... ........+.+.+++.++....+.+.+..... .--.++...|++.++|..-.+......+.
T Consensus 140 ~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 140 PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2 1111 12234568999999999999888887653221 12256789999999997765554444333
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.9e-06 Score=88.79 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=113.4
Q ss_pred cccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhh----ccCCCCeEEEEEe-CCCCCHHHHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVT----EDKLFDKVAMAEV-TENPDHQKIQDKLA 232 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i~ 232 (675)
..++|.+..++.+.+++..+.. +...++|+.|+||||+|+.+++..- ...|+|...|... +......++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4567989999999999876554 5668999999999999999998652 2356676666552 233344442 2333
Q ss_pred HHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcc--cccccccccCCCCccccccccCCCCeEEEEeccchhHH-h
Q 005834 233 SDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIW--GELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL-R 309 (675)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~--~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va-~ 309 (675)
+.+..... . +++-++|+|+++ +...++.+...+.+ -..++.+|++|.+.+.. .
T Consensus 83 ~~~~~~p~----------------~-~~~kv~iI~~ad~m~~~a~naLLK~LEe-------pp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 83 EEVNKKPY----------------E-GDKKVIIIYNSEKMTEQAQNAFLKTIEE-------PPKGVFIILLCENLEQILD 138 (313)
T ss_pred HHHhcCcc----------------c-CCceEEEEechhhcCHHHHHHHHHHhcC-------CCCCeEEEEEeCChHhCcH
Confidence 33322111 1 244566666653 44456666555544 45678888777654322 2
Q ss_pred hhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 310 NVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 310 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
........+++.++++++....+.+...+ .-.+.++.++..++|.|.-+..
T Consensus 139 TI~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 139 TIKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 23344579999999999998888765431 1134477889999999865543
No 44
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.55 E-value=3.3e-07 Score=103.11 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=19.2
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccc
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEK 552 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~ 552 (675)
+.+++.|.+.+|.++.+|.. .++|+.|.++.|
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N 272 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSN 272 (788)
T ss_pred CCCCcEEEecCCccCcccCc--ccccceeeccCC
Confidence 34667777777777666542 355666666544
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=3e-06 Score=88.91 Aligned_cols=180 Identities=11% Similarity=0.157 Sum_probs=109.1
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKL-------------------FDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 214 (675)
|.....++|.+..++.+.+.+..++. +.+.++|+.|+||||+|+.+++....... +....
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34456788999999999998876554 45789999999999999999987642111 11112
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccc
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKE 288 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 288 (675)
++..+..... +....+.+.+. .+++-++|+|++.... .++.+...+.+
T Consensus 92 ~~~~~~~~~v----------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe---- 145 (363)
T PRK14961 92 EIDAASRTKV----------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE---- 145 (363)
T ss_pred EecccccCCH----------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc----
Confidence 2221111111 11222222221 1345699999997653 23333222222
Q ss_pred cccCCCCeEEEEeccc-hhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 289 RMDDQRRCTIILTSRR-QDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 289 ~~~~~~~s~ilvTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
.....++|++|.+ ..+.....+....+++.+++.++..+.+.+.+.... ..--++.+..|++.++|.|-.+.
T Consensus 146 ---~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 146 ---PPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred ---CCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 3345666665544 333333334457899999999999988888664321 11224567889999999885433
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.54 E-value=1.6e-06 Score=85.02 Aligned_cols=171 Identities=13% Similarity=0.142 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccC
Q 005834 163 SRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELN 242 (675)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (675)
+.+..++.+.+++.......+.|+|.+|+|||+||+.+++..... ....++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH-----------
Confidence 345567777777655667789999999999999999999887533 33456665543211 00
Q ss_pred cCHHHHHHHHHHHHhccCeEEEEecCccccc---cccc-ccCCCCccccccccCCCCeEEEEeccchhHH--------hh
Q 005834 243 ESIFDRANRLCRVLKNEERHLIILDNIWGEL---KFDE-VGIPSGDVKKERMDDQRRCTIILTSRRQDLL--------RN 310 (675)
Q Consensus 243 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va--------~~ 310 (675)
..+.+.+. +.-+||+||++... .|.. +...+.. . ...+.++|+||+..... ..
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~----~--~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNR----V--REAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHH----H--HHcCCeEEEECCCChHHCCcccHHHHH
Confidence 01112222 23489999997653 2222 2111111 0 12345788888753211 11
Q ss_pred hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHH
Q 005834 311 VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAK 368 (675)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 368 (675)
.......+++++++.++...++...+... ..+--++..+.|++.+.|.|..+..+..
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARR-GLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 12224689999999999999988765321 1122245667788888888766555543
No 47
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.2e-06 Score=94.99 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=113.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccC------------------------C
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDK------------------------L 209 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 209 (675)
+..+..++|.+..++.|.+++..++.. .+.++|..|+||||+|+.+.+...-.. .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 445667899999999999999876654 568999999999999999988764210 1
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHH----hccCeEEEEecCccccc--ccccccCCCC
Q 005834 210 FDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVL----KNEERHLIILDNIWGEL--KFDEVGIPSG 283 (675)
Q Consensus 210 F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~ 283 (675)
|..++++..+....+.+ ...+.+.+ ..++.-++|+|++.... .++.+...+.
T Consensus 92 hpDviEIdAas~~gVDd----------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 92 FVDYIEMDAASNRGVDE----------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCcceEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 11122222222212211 22222221 12456699999997653 3444333322
Q ss_pred ccccccccCCCCeE-EEEeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 284 DVKKERMDDQRRCT-IILTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 284 ~~~~~~~~~~~~s~-ilvTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
. -..+++ |++||....+.....+....+.++.++.++..+.+.+.+.... .....+..+.|++.++|.|.-
T Consensus 150 E-------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 150 E-------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRD 221 (700)
T ss_pred c-------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 2 223444 5556656666544445567899999999999999888765321 122245568899999999965
Q ss_pred HHHH
Q 005834 363 LITL 366 (675)
Q Consensus 363 i~~~ 366 (675)
+..+
T Consensus 222 ALsL 225 (700)
T PRK12323 222 ALSL 225 (700)
T ss_pred HHHH
Confidence 4443
No 48
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.2e-06 Score=98.01 Aligned_cols=186 Identities=14% Similarity=0.188 Sum_probs=112.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVTEDKL-------------------FDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 214 (675)
|..+..++|.+..++.|.+++..+++.- +.++|..|+||||+|+.+++....... |..++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 3456678899999999999988766665 489999999999999999987653211 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
++..+....+.+ +++|...+ ...-..+++-++|+|++.... ..+.+...+.. -
T Consensus 92 EidAas~~kVDd-IReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------P 146 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------P 146 (944)
T ss_pred EeccccccCHHH-HHHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------c
Confidence 222211111111 12222211 111112466799999996652 33333222221 2
Q ss_pred CCCeEEEEec-cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 293 QRRCTIILTS-RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 293 ~~~s~ilvTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
..+.++|++| ....+..........|++.+|+.++....+.+.+... ...--.+....|++.++|.|--+..+
T Consensus 147 P~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2345555544 4444443334455799999999999999998876532 12223467889999999988544433
No 49
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=4.3e-07 Score=80.60 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=81.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED---KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRV 255 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 255 (675)
+.+.+.|+|.+|+|||++++.+.+..... ..-..++|+.++...+...+...|+..++.+.....+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35789999999999999999999987531 012357799998888999999999999998877445667777888888
Q ss_pred HhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccc
Q 005834 256 LKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRR 304 (675)
Q Consensus 256 l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (675)
+...+..+||+|++..... .... ..+..+. +..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~-~~~l----~~l~~l~-~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFS-DEFL----EFLRSLL-NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHT-HHHH----HHHHHHT-CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCC-HHHH----HHHHHHH-hCCCCeEEEEECh
Confidence 8876667999999965411 1100 1111111 3566777777655
No 50
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.51 E-value=2.8e-07 Score=90.32 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC--CCHHHHHHHH-----HHHhCCCcccCcCHH-HHH
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN--PDHQKIQDKL-----ASDLGIKFELNESIF-DRA 249 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~-~~~ 249 (675)
..-..++|+|.+|+|||||++.+++..... +|+.+.|+.+.+. .++.++++.+ +..++.+........ ...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999998765 8999999998777 7899999998 333333211000001 111
Q ss_pred HHHHHHHhccCeEEEEecCcccc
Q 005834 250 NRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 250 ~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
.........+++.++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 22222223478999999999543
No 51
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=4.2e-06 Score=90.36 Aligned_cols=179 Identities=15% Similarity=0.192 Sum_probs=110.6
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCC-----------------------
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLF----------------------- 210 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----------------------- 210 (675)
|.....++|.+..+..+...+..++. +.+.++|+.|+||||+|+.+++...-....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 34456778999999988887776553 578899999999999999999876432111
Q ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCc
Q 005834 211 DKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGD 284 (675)
Q Consensus 211 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~ 284 (675)
..++.+..+....+.+ ...+.+... .+++-++|+|+++... .++.+...+..
T Consensus 97 ~Dv~eidaas~~~vd~----------------------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 97 PDIIEIDAASKTSVDD----------------------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred CcEEEeeccCCCCHHH----------------------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 0112222222112211 112222211 1356789999997653 34444333322
Q ss_pred cccccccCCCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 285 VKKERMDDQRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 285 ~~~~~~~~~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
....+.+| .||+...+..........+++.+++.++....+.+.+..... .-..+....|++.++|.+--+
T Consensus 155 -------pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 155 -------PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred -------cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 33455554 455555554433445568999999999999999988863321 122456788999999987443
No 52
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=1.8e-06 Score=90.30 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=110.8
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEeCCCCCH--HHHHH--
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD-KVAMAEVTENPDH--QKIQD-- 229 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~--~~~~~-- 229 (675)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... .+. ..+.+++++-... ..+..
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 44456788999999999998887776778999999999999999999876532 222 2344444321100 00000
Q ss_pred HHHHHhCCCcccCcCHHHHHHHHHHHHh-----ccCeEEEEecCcccccc--cccccCCCCccccccccCCCCeEEEEec
Q 005834 230 KLASDLGIKFELNESIFDRANRLCRVLK-----NEERHLIILDNIWGELK--FDEVGIPSGDVKKERMDDQRRCTIILTS 302 (675)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTt 302 (675)
.....++..........+....+.+... .+.+-+||+||+..... .+.+...+.. ....+++|+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-------~~~~~~~Il~~ 162 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-------YSRTCRFIIAT 162 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-------ccCCCeEEEEe
Confidence 0000000000000111222222222221 12345899999964421 1112111111 23446677776
Q ss_pred cchh-HHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 303 RRQD-LLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 303 R~~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
.... +..........+.+.+++.++...++.+.+..... .--.+..+.+++.++|.+-.+.
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 4432 22222233467899999999999998887653221 1235678889999988765443
No 53
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.45 E-value=4.1e-06 Score=93.44 Aligned_cols=205 Identities=16% Similarity=0.136 Sum_probs=118.0
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC---CeEEEEEeCCC---CCHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF---DKVAMAEVTEN---PDHQKIQD 229 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~~~ 229 (675)
...+.++|+...+..+.+.+.......+.|+|.+|+||||+|+.+++.......+ ...-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3445678999999888888776667789999999999999999998877543333 12345544321 12222211
Q ss_pred HH---------------HHHhCCCc-----------------ccCcCHHHHHHHHHHHHhccCeEEEEecCcccc--ccc
Q 005834 230 KL---------------ASDLGIKF-----------------ELNESIFDRANRLCRVLKNEERHLIILDNIWGE--LKF 275 (675)
Q Consensus 230 ~i---------------~~~l~~~~-----------------~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~--~~~ 275 (675)
.+ +...+... +...-.......+.+.+.. +++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCCcccc
Confidence 11 11112110 0011123356677777775 6788887766654 346
Q ss_pred ccccCCCCccccccccCCCCeEEEE--eccchhH-HhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHH
Q 005834 276 DEVGIPSGDVKKERMDDQRRCTIIL--TSRRQDL-LRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEI 352 (675)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v-a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I 352 (675)
+.+...+.. ..+...|++ ||++... ..........+.+.+++.+|.+.++.+.+..... .--.++.+.|
T Consensus 310 ~~ik~~~~~-------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L 381 (615)
T TIGR02903 310 KYIKKLFEE-------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELI 381 (615)
T ss_pred hhhhhhccc-------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHH
Confidence 666554443 444444555 5554322 1112223457889999999999999998753211 1113445555
Q ss_pred HHHhCCChhHHHHHHHH
Q 005834 353 VGRCGELPVALITLAKA 369 (675)
Q Consensus 353 ~~~c~GlPLai~~~~~~ 369 (675)
.+.+..-+-++..++..
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 55554445555555444
No 54
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.4e-06 Score=90.62 Aligned_cols=197 Identities=14% Similarity=0.126 Sum_probs=110.4
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|.+..++.|..++..+... .+.++|++|+||||+|+.+++.....+.+....|.|.+... +......-+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 344567889999999998888866654 55999999999999999999887532222222222221100 0000000000
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEec-cchh
Q 005834 234 DLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTS-RRQD 306 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTt-R~~~ 306 (675)
.++.. .....+....+.+.+. .+++-++|+|+++... .++.+...+.. ....+.+|++| ....
T Consensus 89 el~~~---~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-------p~~~t~~Il~t~~~~k 158 (504)
T PRK14963 89 EIDAA---SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-------PPEHVIFILATTEPEK 158 (504)
T ss_pred Eeccc---ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-------CCCCEEEEEEcCChhh
Confidence 00000 0001111222222221 1356799999997542 23333222222 23344555444 4444
Q ss_pred HHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 307 LLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 307 va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
+..........+++.+++.++....+.+.+....- .--.+....|++.++|.+--+
T Consensus 159 l~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred CChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 43333344568999999999999999988753221 123467889999999988544
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.44 E-value=7e-06 Score=77.31 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=93.9
Q ss_pred ccCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
|.....|+|.++.++.+.-++. ++....+.++|++|+||||||..+++..... |. +.+...-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH-H
Confidence 4567789999988877654443 3456789999999999999999999998754 32 2222111111221 1
Q ss_pred HHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--c-------ccc-----ccCCCCccccccccCCCC
Q 005834 230 KLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--K-------FDE-----VGIPSGDVKKERMDDQRR 295 (675)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~-------~~~-----~~~~~~~~~~~~~~~~~~ 295 (675)
.++. .+. ++-+|++|.+.... + .+. +...-+......++-.+=
T Consensus 94 ~il~---------------------~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 AILT---------------------NLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp HHHH---------------------T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred HHHH---------------------hcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1222 222 34566667764431 0 000 000000000000111223
Q ss_pred eEEEEeccchhHHhhhcCCc-ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 296 CTIILTSRRQDLLRNVMNSQ-KEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 296 s~ilvTtR~~~va~~~~~~~-~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
+-|=-|||...+........ -..+++..+.+|-.++..+.+.... -+--++.+.+|+++|.|-|--+.-+-+..+
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44567888865533222222 3558999999999999988765221 222356899999999999965555444443
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=98.43 E-value=3.2e-06 Score=87.24 Aligned_cols=184 Identities=12% Similarity=0.096 Sum_probs=107.1
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD-KVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++..... .|. .++-+..++..... ..+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHHH
Confidence 44556788999888888888777777778899999999999999999886422 132 22223333332222 2222222
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccccCCCCccccccccCCCCeEEEEeccch-hHHhh
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVGIPSGDVKKERMDDQRRCTIILTSRRQ-DLLRN 310 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~va~~ 310 (675)
.+..... .+..++.-++++|+++.... .+.+...+.. ....+++++++... .+...
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-------~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI-------YSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-------ccCCceEEEEeCCccccchh
Confidence 1110000 00113467999999976531 1111111111 23446666665432 22221
Q ss_pred hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 311 VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
.......++++++++++....+...+....- .--.+....|++.++|..-.
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi-~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKV-PYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 2223458999999999999998887753221 11245778899999987633
No 57
>PTZ00202 tuzin; Provisional
Probab=98.42 E-value=3.7e-06 Score=86.26 Aligned_cols=164 Identities=17% Similarity=0.253 Sum_probs=104.5
Q ss_pred cccCccccccHHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 154 QVKDYEAFDSRKKVFQDVLEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 154 ~~~~~~~~~gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.|++...|+||+.++..+...|.+ +..+++.|.|++|+|||||++.+..... + ...+++.. +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 456677899999999999998862 2346899999999999999999996654 1 12222222 67999999
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHh----c-cCeEEEEecCcccccc----cccccCCCCccccccccCCCCeEEEEe
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLK----N-EERHLIILDNIWGELK----FDEVGIPSGDVKKERMDDQRRCTIILT 301 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilvT 301 (675)
|+.+||.+.. ....++...+.+.+. . +++.+||+-== +-.. +++. ..+.. ...-|.|++-
T Consensus 329 LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~-v~la~-------drr~ch~v~e 397 (550)
T PTZ00202 329 VVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEV-VALAC-------DRRLCHVVIE 397 (550)
T ss_pred HHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHH-HHHHc-------cchhheeeee
Confidence 9999998433 223445555554443 2 56666666321 1111 1111 11111 4456667765
Q ss_pred ccchhHH--hhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 302 SRRQDLL--RNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 302 tR~~~va--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
.-.+... ....+.-.-|.+++++.++|..+-.+..
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 5444321 2233455688999999999988776553
No 58
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=6.1e-06 Score=89.68 Aligned_cols=188 Identities=13% Similarity=0.177 Sum_probs=111.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTED-------------------KLFDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 214 (675)
|..+..++|.+..++.+...+..++. +.+.++|+.|+||||+|+.+++...-. +.|...+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34566788999999999998886555 457899999999999999999865421 1122233
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
++.......+.++ ++|+.. +...-..+++-++|+|++.... .++.+...+.+ .
T Consensus 92 eidaas~~gvd~i-r~ii~~-----------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------p 146 (546)
T PRK14957 92 EIDAASRTGVEET-KEILDN-----------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------P 146 (546)
T ss_pred EeecccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-------C
Confidence 3332222222211 112211 1111112456799999986542 23333222222 2
Q ss_pred CCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHHHHHH
Q 005834 293 QRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALITLAK 368 (675)
Q Consensus 293 ~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 368 (675)
...+.+| +||....+..........+++.+++.++....+.+.+.... ..--+.....|++.++|.+- |+..+-.
T Consensus 147 p~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 147 PEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2344444 56555545433345567999999999998888887654321 22234567789999999763 4444433
No 59
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=5.6e-08 Score=100.99 Aligned_cols=126 Identities=25% Similarity=0.317 Sum_probs=104.3
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccccCCCCCcEE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQLKKLEIL 618 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L 618 (675)
.+..|..|+++.|.....+.+ +..+ -|++|-+++|+++.+|..++.+.+|..|+.+.|.+.. |..++.|.+|+.|
T Consensus 119 ~L~~lt~l~ls~NqlS~lp~~---lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLSHLPDG---LCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhHHHHhhhccchhhcCChh---hhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence 567777888876665544433 2333 4899999999999999999988999999999999877 8899999999999
Q ss_pred EeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 619 SFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 619 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.++.|.+..+|.++..|+ |..||++.|+ +..+|..+. +|..||+|-|.++|
T Consensus 195 ~vrRn~l~~lp~El~~Lp-Li~lDfScNk-is~iPv~fr--~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSLP-LIRLDFSCNK-ISYLPVDFR--KMRHLQVLQLENNP 245 (722)
T ss_pred HHhhhhhhhCCHHHhCCc-eeeeecccCc-eeecchhhh--hhhhheeeeeccCC
Confidence 999999999999988664 8999999877 888998876 59999999988765
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=1.9e-06 Score=77.85 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=46.4
Q ss_pred ccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 162 DSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 162 ~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
.|++..+..+...+.....+.+.|+|.+|+|||++++.+++..... -..++++..++..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhh
Confidence 3788889999988877667889999999999999999999987522 2346677665543
No 61
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.40 E-value=8.7e-06 Score=84.43 Aligned_cols=186 Identities=11% Similarity=0.106 Sum_probs=106.9
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe-EEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK-VAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|+++.++.+..++.....+.+.++|.+|+||||+|+.+++...... +.. .+-+..+.......+ .+.+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~-~~~i~ 90 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI-RNKIK 90 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH-HHHHH
Confidence 344556889999999999999877777789999999999999999998864322 211 111222222222111 11111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccch-hHHhh
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ-DLLRN 310 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~va~~ 310 (675)
.+....+ .....+-++++|++.... ....+...+.. ....+.+|+++... .....
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-------~~~~~~lIl~~~~~~~l~~~ 148 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM-------YSQNTRFILSCNYSSKIIDP 148 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc-------CCCCCeEEEEeCCccccchh
Confidence 1110000 001235689999985442 12222111111 23345666665332 22111
Q ss_pred hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 311 VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
.......+++.++++++....+.+.+.... ..--++....+++.++|.+--+..
T Consensus 149 l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 149 IQSRCAVFRFSPLKKEAVAERLRYIAENEG-IEITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHHHhheeeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222345789999999999988888775322 112356788999999998755433
No 62
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.39 E-value=1.4e-06 Score=82.52 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 161 FDSRKKVFQDVLEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
|+||+++++++...+. ....+.+.|+|.+|+|||+|++.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999993 4567899999999999999999999988876
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.1e-06 Score=90.47 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=110.9
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDK-------------------LFDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 214 (675)
|.....++|.+...+.|.+++..++. +.+.++|+.|+||||+|+.+++...-.. .|-.++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 44566789999999999999986654 5678999999999999999988764211 111222
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
.+..+....+.++ ++++.... ..-..++.-++|+|++.... ..+.+...+.. .
T Consensus 91 EIDAAs~~~VddI-Reli~~~~-----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------P 145 (702)
T PRK14960 91 EIDAASRTKVEDT-RELLDNVP-----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------P 145 (702)
T ss_pred EecccccCCHHHH-HHHHHHHh-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-------C
Confidence 2322222122111 11111110 00012456689999997653 23333222221 2
Q ss_pred CCCeEEEEeccc-hhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 293 QRRCTIILTSRR-QDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 293 ~~~s~ilvTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
..+.++|++|.+ ..+..........+++.+++.++....+.+.+.... ..--.+....|++.++|.+-.+..
T Consensus 146 P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 146 PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 345566666544 333333345567999999999999999988775322 122345678899999998744443
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.1e-06 Score=88.60 Aligned_cols=194 Identities=12% Similarity=0.128 Sum_probs=112.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++...-...... ..+....+- ..+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHHHc
Confidence 445667899999999999988877654 5799999999999999999987643211100 000000011 11111
Q ss_pred HhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEE-Eec
Q 005834 234 DLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTII-LTS 302 (675)
Q Consensus 234 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il-vTt 302 (675)
....+. +. .....+....+.+.+. .++.-++|+|++.... .++.+...+.. ......+| .||
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-------Pp~~viFILaTt 159 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-------PPAHIVFILATT 159 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-------CCCceEEEeecC
Confidence 111000 00 0001122222332222 2456699999997653 34444333222 22344444 555
Q ss_pred cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 303 RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 303 R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
....+..........|.+.+++.++..+.+.+.+.... ..--.+....|++.++|.+--+
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHHH
Confidence 55555444445567899999999999988888765322 2223567889999999988433
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=4.7e-05 Score=79.17 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=126.8
Q ss_pred cccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 005834 161 FDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLG 236 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (675)
+.+|+++++++...|. +..+.-+.|+|..|.|||+.++.+.+.......=..+++|++-...++..++..|++.++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999988776 344445999999999999999999999876422222789999999999999999999997
Q ss_pred CCcccCcCHHHHHHHHHHHHhc-cCeEEEEecCcccccccc--cccCCCCccccccccCCCCeEEEE--eccchhHHh--
Q 005834 237 IKFELNESIFDRANRLCRVLKN-EERHLIILDNIWGELKFD--EVGIPSGDVKKERMDDQRRCTIIL--TSRRQDLLR-- 309 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~va~-- 309 (675)
.......+..+....+.+.+.. ++.+++|||++.....-. .+...+.. .....++|++ .+-+.....
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~------~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA------PGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh------ccccceeEEEEEEeccHHHHHHh
Confidence 4444345667777788887764 578999999996553221 11000000 0222444433 232222211
Q ss_pred -----hhcCCcceEecCCCCHHHHHHHHHHHhC----CCCCCCCchHHHHHHHHHhCC-ChhHHHHHH
Q 005834 310 -----NVMNSQKEIQIDALSKEEALHLFQKIVG----DSMKTSAFQPIAHEIVGRCGE-LPVALITLA 367 (675)
Q Consensus 310 -----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~----~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 367 (675)
...+ ...+..+|-+.+|-.+.+..++. ...-.+..-+++..++..-+| .=.||..+-
T Consensus 173 d~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1122 23477888899999999888764 222233333344444444444 334444433
No 66
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1.7e-05 Score=82.05 Aligned_cols=201 Identities=13% Similarity=0.151 Sum_probs=115.6
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC--CCeEEEEEeCCCCCHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKL--FDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i 231 (675)
|.....++|.++....+...+..+.. ..+.|+|..|+||||+|..+.+..-.... +... ............+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 34455678999999999999886664 46899999999999999999987653210 1110 000011111122333
Q ss_pred HHHhC-------CCccc------CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 232 ASDLG-------IKFEL------NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 232 ~~~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
...-. .+.+. ..-..+.+..+.+.+. .+++-++|+|++.... ..+.+...+.. +.
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------pp 169 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------PP 169 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc------CC
Confidence 22211 00000 0111233445555544 2466799999997653 22222211111 02
Q ss_pred CCCeEEEEeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 293 QRRCTIILTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
....-|++|++...+.....+....+++.+++.++...++.+...... -..+....+++.++|.|..+..+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223345566555444433344556999999999999999988532211 224567889999999998665443
No 67
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.35 E-value=5.8e-08 Score=106.38 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=67.8
Q ss_pred hhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCE
Q 005834 562 HFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQL 640 (675)
Q Consensus 562 ~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~ 640 (675)
.+..+.-.|+.|++++|.+..+|..|+.+.+|+.|+++.|.+.. |.+++++.+|++|.|.+|.+..+|.++..+++|+.
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 33444444677777777766667667777777777777776666 66666677777777777666677777777777777
Q ss_pred ecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 641 LDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 641 L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
|+++.|. +..+|.-+.. ++.+..+..++
T Consensus 119 LdlS~N~-f~~~Pl~i~~--lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEV--LTAEEELAASN 146 (1081)
T ss_pred cccchhc-cCCCchhHHh--hhHHHHHhhhc
Confidence 7777665 5556654432 44444444443
No 68
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.1e-05 Score=86.87 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=110.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKL-------------------FDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 214 (675)
|.....++|.+.....+...+..+.. +.+.++|++|+||||+|+.+++....... +..+.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 44566788999888888888876666 45789999999999999999887542110 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
.+..+......++ ++|....... .. .+++-++|+|++.... ..+.+...+.. .
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~~----------------p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------p 144 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGYR----------------PM-EGKYKVYIIDEVHMLTKEAFNALLKTLEE-------P 144 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhhC----------------hh-cCCeEEEEEEChHHhHHHHHHHHHHHHHh-------C
Confidence 3333222222221 1222211100 01 1356799999986442 22222222211 2
Q ss_pred CCCeEEEE-eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC-hhHHHHHHHHH
Q 005834 293 QRRCTIIL-TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL-PVALITLAKAL 370 (675)
Q Consensus 293 ~~~s~ilv-TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~~L 370 (675)
.....+|+ ||....+..........+++.+++.++....+.+.+.... ..--.+....|++.++|. +.++..+-.+.
T Consensus 145 ~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 145 PSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23344443 4443444443445567899999999999888888774321 122245778899888654 67777666544
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=2.8e-07 Score=69.39 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=30.3
Q ss_pred CCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 614 KLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 614 ~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+|++|++++|+++.+|. .+..+++|++|++++|. +..+|++.+. .+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~-~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFS-NLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTT-TSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHc-CCCCCCEEeCcCC
Confidence 45555555555555553 34555555555555544 4555554444 5555555555554
No 70
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.34 E-value=1.9e-05 Score=78.05 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC----eEEEEEeCCCCCHHHHHHHHHHHhCC
Q 005834 165 KKVFQDVLEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD----KVAMAEVTENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 165 ~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (675)
.+.++.+.+.+. ....+-+.|||.+|.|||++++++.........-+ .++.|.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 344555555554 33456789999999999999999998765431111 47788888999999999999999999
Q ss_pred CcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc-----cccccCCCCccccccccCCCCeEEEEeccchhHHh---
Q 005834 238 KFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK-----FDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLR--- 309 (675)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~--- 309 (675)
+.................++.-+--+||+|.+.+... -..+. +.++.+-+.-.=+-|.+-|+.-.-+-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~L----n~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFL----NALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHH----HHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 9875555555555555555544557999999976421 11111 11111111333445666665533220
Q ss_pred -hhcCCcceEecCCCCHHHHH-HHHHHHhC----CCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 310 -NVMNSQKEIQIDALSKEEAL-HLFQKIVG----DSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 310 -~~~~~~~~~~l~~L~~~e~~-~Lf~~~~~----~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
...+....+.++..+.++-. .|+..... .....-..+++++.|...++|+.--+.
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 11223456777776655443 44433221 122223346799999999999874433
No 71
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1.4e-07 Score=90.35 Aligned_cols=124 Identities=23% Similarity=0.191 Sum_probs=70.7
Q ss_pred CccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCcccc-cCCCCCcEEEe
Q 005834 542 PRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIV-GQLKKLEILSF 620 (675)
Q Consensus 542 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i-~~l~~L~~L~l 620 (675)
..|..|++++|...... ...+-++.+|+|+++.|.+..+- ++..|++|+.|+|++|.++....+ .+|-|.++|.|
T Consensus 284 q~LtelDLS~N~I~~iD---ESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID---ESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhh---hhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34555555444322221 12344556666666666665443 255566666666666665553332 24555566666
Q ss_pred eCCCCCccchhhcCCCCCCEecCcCcccCcccc--hhhhhccCCccCEEeCcCCC
Q 005834 621 RGSDIERLPLEFGQLTRLQLLDLSNCRRLEVIT--PNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 621 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~~~~L~~L~~L~l~~c~ 673 (675)
.+|.+..|. ++++|.+|..||+++|. +..+. .++ + +||.|++|.+.++|
T Consensus 360 a~N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~I-G-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHI-G-NLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhhhh-hhHhhhhheeccccccc-hhhHHHhccc-c-cccHHHHHhhcCCC
Confidence 666555553 56777788888888775 44442 233 3 58888888887765
No 72
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.33 E-value=3.5e-07 Score=94.90 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=81.5
Q ss_pred CeEEecCCCCCcc-----CCC-CcCC-CccceeEeccccCccc--ccchhhhcCCCCccEEEecCCCCC-----CCcccc
Q 005834 522 PIAISLPYRGIQV-----LPE-RLQC-PRLELLLLLEKGGGSM--PISDHFFDGTEGLRVLNFTGIHFS-----SLPSSL 587 (675)
Q Consensus 522 ~~~lsl~~~~~~~-----~~~-~~~~-~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~-----~lp~~i 587 (675)
++++.+.+|.+.. +.. ...+ ++|+.|++.++..... ......+..++.|+.|++++|.+. .++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 6666666665541 111 1133 6777777765543211 111223455667777777777665 233344
Q ss_pred ccccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCCcc-chhhc-----CCCCCCEecCcCcccCc-----
Q 005834 588 GRLINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIERL-PLEFG-----QLTRLQLLDLSNCRRLE----- 650 (675)
Q Consensus 588 ~~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~l-p~~i~-----~L~~L~~L~l~~~~~l~----- 650 (675)
..+++|++|++++|.+.. ...+..+++|++|++++|.+... +..+. ..++|++|++++|. +.
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~ 268 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAK 268 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHH
Confidence 555677777777777653 23455667777777777766531 11111 23677777777765 32
Q ss_pred ccchhhhhccCCccCEEeCcCCC
Q 005834 651 VITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 651 ~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.++..+ . .+++|++|+++++.
T Consensus 269 ~l~~~~-~-~~~~L~~l~l~~N~ 289 (319)
T cd00116 269 DLAEVL-A-EKESLLELDLRGNK 289 (319)
T ss_pred HHHHHH-h-cCCCccEEECCCCC
Confidence 122222 2 35677777777653
No 73
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=1.8e-05 Score=82.47 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=110.7
Q ss_pred cCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEE----EEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAM----AEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w----v~vs~~~~~~~~~~~ 230 (675)
.....++|.++..+.+.+.+..+..+ .+.++|+.|+||+|+|..+.+..--......... .+.. ....-...+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~ 94 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARR 94 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHH
Confidence 34456789999999999998876655 5889999999999999999887643221100000 0000 0000011111
Q ss_pred HHHHhCCCc-------cc------CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCcccccccc
Q 005834 231 LASDLGIKF-------EL------NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 231 i~~~l~~~~-------~~------~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 291 (675)
|...-..+. .. ..-..+.+..+.+.+. .+++-++|+|++.... ..+.+...+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------- 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------- 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 111100000 00 0011233444444443 2456799999986553 22332222211
Q ss_pred CCCCeEEEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 292 DQRRCTIILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 292 ~~~~s~ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
-..++.+|++|.+. .+..........+.+.+++.++..+++.+..... .......++..++|.|+.+..+
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22345555555543 4433344556799999999999999998864221 1122368899999999865544
No 74
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.32 E-value=1.9e-06 Score=87.97 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=66.2
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCcccCcCHHH
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP--DHQKIQDKLASDLGIKFELNESIFD 247 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 247 (675)
+++.+.. +.-+...|+|++|+||||||+.+|+....+ +|+.++||.+++.. .+.++++.|...+-...- ..+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~ 236 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAER 236 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHH
Confidence 4444442 345678999999999999999999998865 89999999999887 777888887632111111 111111
Q ss_pred ------HHHHHHHHH-hccCeEEEEecCccc
Q 005834 248 ------RANRLCRVL-KNEERHLIILDNIWG 271 (675)
Q Consensus 248 ------~~~~l~~~l-~~~k~~LlVlDdv~~ 271 (675)
..-...+++ ..+++.+|++|++..
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111222232 357899999999953
No 75
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=8.8e-06 Score=79.05 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=86.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
..+.+.|+|..|+|||+|++.+++.... .+++.. .+..+ ....+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~---------------------~~~~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSD---------------------AANAAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchH---------------------HHHhhhc
Confidence 3467999999999999999998876432 133221 11111 1112221
Q ss_pred cCeEEEEecCccccccc-ccccCCCCccccccccCCCCeEEEEeccchhH--------HhhhcCCcceEecCCCCHHHHH
Q 005834 259 EERHLIILDNIWGELKF-DEVGIPSGDVKKERMDDQRRCTIILTSRRQDL--------LRNVMNSQKEIQIDALSKEEAL 329 (675)
Q Consensus 259 ~k~~LlVlDdv~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v--------a~~~~~~~~~~~l~~L~~~e~~ 329 (675)
-+|++||+...... +.+. .+++.+ ...|..+|+|++...- ....+.....+++++++.++-.
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf----~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLF----HLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLS 159 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHH----HHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHH
Confidence 37888999543210 1111 111111 2346678888874221 1122355679999999999999
Q ss_pred HHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 330 HLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 330 ~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
.++.+.+... .-.--+++..-|++.+.|..-++..+-
T Consensus 160 ~iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 160 QVIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999988642 122235678888888888776665433
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.31 E-value=7.2e-06 Score=92.40 Aligned_cols=172 Identities=16% Similarity=0.269 Sum_probs=99.5
Q ss_pred ccCccccccHHHHHH---HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQ---DVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
|.....|+|++..+. .+...+..+....+.++|++|+||||+|+.+++.... +|.. ++.+. ....++ +
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~~---lna~~-~~i~di-r-- 94 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFSS---LNAVL-AGVKDL-R-- 94 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--ccee---ehhhh-hhhHHH-H--
Confidence 344567889888774 4556666777778899999999999999999987642 2411 11110 011110 0
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHHh-ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEe--ccch-
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVLK-NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILT--SRRQ- 305 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvT--tR~~- 305 (675)
+......+.+. .+++.+||+||++... .++.+... -..|+.++++ |.+.
T Consensus 95 ---------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp~ 149 (725)
T PRK13341 95 ---------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENPY 149 (725)
T ss_pred ---------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCChH
Confidence 11111111111 1356799999996542 23333211 1234555553 3332
Q ss_pred -hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCC------CCCCCCchHHHHHHHHHhCCCh
Q 005834 306 -DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGD------SMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 306 -~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~l~~~~~~I~~~c~GlP 360 (675)
.+..........+.+++|+.++...++.+.+.. .....--++....|++.+.|..
T Consensus 150 ~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 150 FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 122222233568999999999999999887641 1112223456788888888864
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=87.76 Aligned_cols=182 Identities=14% Similarity=0.186 Sum_probs=110.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC------------------------C
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDK------------------------L 209 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 209 (675)
+..+..++|.+..+..|.+++..++. ..+.++|..|+||||+|+.+.+..--.. .
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGR 91 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCC
Confidence 34566788999999999998887665 4568999999999999999977653211 0
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCC
Q 005834 210 FDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSG 283 (675)
Q Consensus 210 F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~ 283 (675)
+..++++..+....+. ....+.+... .++.-++|+|++.... .++.+...+.
T Consensus 92 h~D~~eldaas~~~Vd----------------------~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE 149 (618)
T PRK14951 92 FVDYTELDAASNRGVD----------------------EVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE 149 (618)
T ss_pred CCceeecCcccccCHH----------------------HHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc
Confidence 1112222221111111 1222222211 1344588999997653 3333333222
Q ss_pred ccccccccCCCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 284 DVKKERMDDQRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 284 ~~~~~~~~~~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
+ -...+++| +||....+..........+++++++.++....+.+.+.... ..--.+....|++.++|.+--
T Consensus 150 E-------PP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 150 E-------PPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VPAEPQALRLLARAARGSMRD 221 (618)
T ss_pred c-------CCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 2 23445555 45554555433445567999999999999999988765322 122245678999999998754
Q ss_pred HHHH
Q 005834 363 LITL 366 (675)
Q Consensus 363 i~~~ 366 (675)
+..+
T Consensus 222 al~l 225 (618)
T PRK14951 222 ALSL 225 (618)
T ss_pred HHHH
Confidence 4433
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=8.5e-06 Score=89.94 Aligned_cols=197 Identities=12% Similarity=0.146 Sum_probs=110.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|..+..++|.+..++.|.+.+..++.. .+.++|..|+||||+|+.+++...-...+.. ..+..-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHc
Confidence 345667899999999999988876654 4689999999999999999887643211100 00000011111110
Q ss_pred HhCCCc---ccC-cCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEE-EEec
Q 005834 234 DLGIKF---ELN-ESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTI-ILTS 302 (675)
Q Consensus 234 ~l~~~~---~~~-~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i-lvTt 302 (675)
.-..+. +.. ....+....+.+.+. .+++-++|+|++.... ..+.+...+.. -....++ ++||
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-------Pp~~v~FIL~Tt 157 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATT 157 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-------CCCCeEEEEecC
Confidence 000000 000 001111222222221 2456799999996553 23333222211 2234444 4455
Q ss_pred cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 303 RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 303 R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
....+..........+++++++.++....+.+.+.... ...-......|++.++|.+--+..+
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555433344567999999999999999988764221 1222456778999999988644443
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=2.6e-05 Score=82.17 Aligned_cols=186 Identities=12% Similarity=0.172 Sum_probs=108.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTED--------------------KLFDKV 213 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~ 213 (675)
|.....++|.+..++.+.+++..+.. +.+.++|.+|+||||+|+.+.+..... .+++.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 34455678999999999998876654 467899999999999999998875421 12222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCcccccccc
Q 005834 214 AMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 291 (675)
.++..+...... -.+++...+.... . .+++-++|+|++.... ..+.+...+..
T Consensus 89 ~~~~~~~~~~~~-~~~~l~~~~~~~p----------------~-~~~~~vviidea~~l~~~~~~~Ll~~le~------- 143 (355)
T TIGR02397 89 IEIDAASNNGVD-DIREILDNVKYAP----------------S-SGKYKVYIIDEVHMLSKSAFNALLKTLEE------- 143 (355)
T ss_pred EEeeccccCCHH-HHHHHHHHHhcCc----------------c-cCCceEEEEeChhhcCHHHHHHHHHHHhC-------
Confidence 233222111111 1122222221100 1 1345688999985442 22332222211
Q ss_pred CCCCeEEEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 292 DQRRCTIILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 292 ~~~~s~ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
....+.+|++|.+. .+..........+++.++++++....+...+..... .--++.+..+++.++|.|..+....
T Consensus 144 ~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 144 PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 23455655565433 333223334568899999999999888887642211 1124678889999999886555443
No 80
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.9e-05 Score=84.63 Aligned_cols=183 Identities=11% Similarity=0.130 Sum_probs=112.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTED-------------------KLFDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 214 (675)
|..+..++|.+..++.+.+.+..++.. .+.++|+.|+||||+|+.+++..--. ..+..++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 445667889999999888888766655 78999999999999999998753210 1122344
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
.+..+....+.++ ++|++...... . .++.-++|+|++.... ..+.+...+.+ -
T Consensus 89 eidaas~~~vddI-R~Iie~~~~~P----------------~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-------P 143 (491)
T PRK14964 89 EIDAASNTSVDDI-KVILENSCYLP----------------I-SSKFKVYIIDEVHMLSNSAFNALLKTLEE-------P 143 (491)
T ss_pred EEecccCCCHHHH-HHHHHHHHhcc----------------c-cCCceEEEEeChHhCCHHHHHHHHHHHhC-------C
Confidence 5554444443332 22322221100 0 1355689999986542 23333222222 2
Q ss_pred CCCeEEEE-eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 293 QRRCTIIL-TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 293 ~~~s~ilv-TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
...+++|+ ||....+..........+++.+++.++....+.+.+..... .--++..+.|++.++|.+-.+
T Consensus 144 p~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 34555555 44445554444455678999999999999999888753321 223456788999999987543
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=2.1e-05 Score=74.53 Aligned_cols=160 Identities=19% Similarity=0.176 Sum_probs=92.3
Q ss_pred HHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEEEEEeCC-CCCHHHH
Q 005834 170 DVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTED--------------------KLFDKVAMAEVTE-NPDHQKI 227 (675)
Q Consensus 170 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~-~~~~~~~ 227 (675)
.+.+.+..++. ..+.++|..|+||||+|+.+.+..... .+.|. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 34555555555 578999999999999999998886532 12222 2222211 1122 12
Q ss_pred HHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccch
Q 005834 228 QDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ 305 (675)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (675)
.+++.+.+.... . .+.+-++|+||+.... .++.+...+.. ....+.+|++|++.
T Consensus 81 i~~i~~~~~~~~----------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~ 136 (188)
T TIGR00678 81 VRELVEFLSRTP----------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEE-------PPPNTLFILITPSP 136 (188)
T ss_pred HHHHHHHHccCc----------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECCh
Confidence 222222222110 0 1356789999986542 23333222222 23345566655543
Q ss_pred -hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 306 -DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 306 -~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
.+..........+++.+++.++..+.+.+. + . -++.+..|++.++|.|..
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 332323344569999999999998888776 2 1 146788999999998853
No 82
>PRK08727 hypothetical protein; Validated
Probab=98.29 E-value=1.3e-05 Score=78.61 Aligned_cols=172 Identities=12% Similarity=0.103 Sum_probs=98.8
Q ss_pred ccccccHH-HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 005834 158 YEAFDSRK-KVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLG 236 (675)
Q Consensus 158 ~~~~~gr~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (675)
.+.|++.. ..+..+.....+.....+.|+|..|+|||.|++.+++....+ ...+.|+++.+ ....
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~------ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGR------ 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhh------
Confidence 44455433 333433333333344579999999999999999999987644 23556665422 1111
Q ss_pred CCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc---cccccCCCCccccccccCCCCeEEEEeccchhHH-----
Q 005834 237 IKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK---FDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL----- 308 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va----- 308 (675)
.....+.+. +.-+||+||+..... |..... ++++.. ...|..||+|++...-.
T Consensus 84 ------------~~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf---~l~n~~--~~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 84 ------------LRDALEALE--GRSLVALDGLESIAGQREDEVALF---DFHNRA--RAAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred ------------HHHHHHHHh--cCCEEEEeCcccccCChHHHHHHH---HHHHHH--HHcCCeEEEECCCChhhhhhhh
Confidence 111222333 346999999965432 221111 111111 23456799999853210
Q ss_pred ---hhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 309 ---RNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 309 ---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
...+.....+++++++.++-..++.+++.... -.--++...-|++.++|..-.+
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 11123356899999999999999998775321 1222456778888887655443
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=7.1e-07 Score=67.17 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=25.3
Q ss_pred CccEEEecCCCCCCCcc-ccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCC
Q 005834 569 GLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGS 623 (675)
Q Consensus 569 ~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~ 623 (675)
+|++|++++|+++.+|+ .+..+++|++|++++|.++. +..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555555555554432 34444444444444444443 223444444444444444
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.4e-05 Score=86.96 Aligned_cols=199 Identities=12% Similarity=0.157 Sum_probs=108.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|++..++.+.+++..+.. +.+.++|+.|+||||+|+.+++...-.. |.... ....-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 44566788999999999999876554 4688999999999999999998764221 11000 0011111111111
Q ss_pred HhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEE-Eec
Q 005834 234 DLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTII-LTS 302 (675)
Q Consensus 234 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il-vTt 302 (675)
....+. .. .....+....+.+... .+++-++|+|++.... .++.+...+.. ....+.+| +|+
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-------Pp~~tvfIL~Tt 157 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-------PPKHVVFIFATT 157 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-------CCCcEEEEEECC
Confidence 100000 00 0000111122222111 1234479999986542 23333222211 22344444 454
Q ss_pred cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHHHHHH
Q 005834 303 RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALITLAK 368 (675)
Q Consensus 303 R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 368 (675)
....+..........+++.++++++....+...+.... ..--.+.+..+++.++|.+- |+..+-.
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444333344566899999999999988888764321 11124567899999999764 4444443
No 85
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=3e-05 Score=81.47 Aligned_cols=173 Identities=10% Similarity=0.112 Sum_probs=103.3
Q ss_pred ccccccHHHHHHHHHHHhccCC----------ccEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------C
Q 005834 158 YEAFDSRKKVFQDVLEALKDDK----------LNIIGVYGMGGVGKTTLVKQVAKQVTED-------------------K 208 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~ 208 (675)
...++|.+..++.|.+++..+. .+.+.++|+.|+|||++|+.+++..--. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3467899999999999887543 4568899999999999999998764321 1
Q ss_pred CCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCC
Q 005834 209 LFDKVAMAEVT-ENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIP 281 (675)
Q Consensus 209 ~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~ 281 (675)
|.| +.++... ....+.+ ...+.+... .+++-++|+|++.... ..+.+...
T Consensus 84 hpD-~~~i~~~~~~i~i~~----------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVDE----------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCC-EEEeccccccCCHHH----------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 111 1222111 1111111 222222221 1345588889996653 22222222
Q ss_pred CCccccccccCCCCeEEEE-eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 282 SGDVKKERMDDQRRCTIIL-TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 282 ~~~~~~~~~~~~~~s~ilv-TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
+.. ...++.+|+ ||....+.....+....+.+.+++.++..+.+.+..+ . ..+.+..++..++|.|
T Consensus 141 LEe-------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~--~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 VEE-------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----V--DPETARRAARASQGHI 207 (394)
T ss_pred hhc-------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----C--CHHHHHHHHHHcCCCH
Confidence 211 223444444 5554444444445567999999999999988875432 1 1356788999999999
Q ss_pred hHHHHH
Q 005834 361 VALITL 366 (675)
Q Consensus 361 Lai~~~ 366 (675)
.....+
T Consensus 208 ~~A~~l 213 (394)
T PRK07940 208 GRARRL 213 (394)
T ss_pred HHHHHH
Confidence 755444
No 86
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.9e-05 Score=83.96 Aligned_cols=203 Identities=14% Similarity=0.169 Sum_probs=110.6
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAE-VTENPDHQKIQDKLA 232 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~ 232 (675)
|.....++|.+..++.|.+++.++..+ .+.++|+.|+||||+|+.+++...-........|.. .......-...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344567889999999999988876665 488999999999999999998775321111111110 000000001111111
Q ss_pred HHhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE-e
Q 005834 233 SDLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL-T 301 (675)
Q Consensus 233 ~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv-T 301 (675)
..-..+. +. .....+....+.+.+. .+++-++|+|++.... .++.+...+.+ ..+.+.+|+ |
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-------p~~~t~~Il~t 164 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-------PPPHAIFIFAT 164 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-------CCCCeEEEEEe
Confidence 1100000 00 0011122233333332 1355688999986543 34444333222 334555554 4
Q ss_pred ccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 302 SRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 302 tR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
++...+..........+++.++++++....+...+.... ..--.+.+..|++.++|.+--+..
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 444444332223345789999999999888887764221 122356788999999998754433
No 87
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.8e-07 Score=94.52 Aligned_cols=152 Identities=20% Similarity=0.168 Sum_probs=88.4
Q ss_pred CCCeEEecCCCCCccCCC---CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc--cccccCCC
Q 005834 520 EGPIAISLPYRGIQVLPE---RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS--LGRLINLQ 594 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~L~~L~ 594 (675)
.+++.+++.++.....+. ...|++++.|+++.|-.........+..++++|+.|+++.|++....++ -..+.+|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 345666666665554442 2367777777776554333333344566777777777777766533222 23566777
Q ss_pred EEEeccccCCC--c-------------------------ccccCCCCCcEEEeeCCCCCccc--hhhcCCCCCCEecCcC
Q 005834 595 TLCLEYCRLKD--I-------------------------VIVGQLKKLEILSFRGSDIERLP--LEFGQLTRLQLLDLSN 645 (675)
Q Consensus 595 ~L~l~~~~l~~--~-------------------------~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~ 645 (675)
.|.|++|.++. . .+...++.|+.|||++|++..+| ..++.|+.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 77777776542 1 12233566777777777766666 3467777777777776
Q ss_pred cccCccc--chh----hhhccCCccCEEeCcCCC
Q 005834 646 CRRLEVI--TPN----VICQSWLHLEVFGMAASR 673 (675)
Q Consensus 646 ~~~l~~l--p~~----~~~~~L~~L~~L~l~~c~ 673 (675)
|. +..+ |.. ... .+++|+.|++..++
T Consensus 281 tg-i~si~~~d~~s~~kt~-~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 281 TG-IASIAEPDVESLDKTH-TFPKLEYLNISENN 312 (505)
T ss_pred cC-cchhcCCCccchhhhc-ccccceeeecccCc
Confidence 54 3322 211 112 46777777776543
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.5e-05 Score=86.81 Aligned_cols=185 Identities=14% Similarity=0.161 Sum_probs=111.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDK-------------------LFDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 214 (675)
|..+..++|.+..++.|.+++..+..+ .+.++|+.|+||||+|+.+++..--.. .|..++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445667899999999999999876665 468999999999999999998764221 122234
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
.+..+....+.++ +++++.+.... ..++.-++|+|++.... ..+.+...+.. -
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~p-----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------p 146 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYAP-----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------P 146 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhc-------c
Confidence 4443333333332 22332221110 12455689999997642 23322222221 2
Q ss_pred CCCeEEEE-eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 293 QRRCTIIL-TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 293 ~~~s~ilv-TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
...+++|+ ||....+..........+++++++.++....+.+.+.... ..-..+....|++.++|.+--+..
T Consensus 147 p~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 147 PSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-VEFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHH
Confidence 23455555 4544444433344456889999999998887777664322 122245677889999998754433
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=3.2e-06 Score=95.07 Aligned_cols=109 Identities=25% Similarity=0.355 Sum_probs=87.9
Q ss_pred ccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCccccccccCCCEEEeccccCCC--cccccCCCCCcEEE
Q 005834 543 RLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILS 619 (675)
Q Consensus 543 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~ 619 (675)
.+..|.+..+... ..++ ..+..+++|+.|+|++|.+. .+|..++.|++|++|+|++|++.. |..+++|++|++|+
T Consensus 419 ~v~~L~L~~n~L~-g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLR-GFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCcc-ccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 4677777544321 1223 34788999999999999998 789999999999999999999886 78899999999999
Q ss_pred eeCCCCC-ccchhhcCC-CCCCEecCcCcccCcccc
Q 005834 620 FRGSDIE-RLPLEFGQL-TRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 620 l~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp 653 (675)
|++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999887 889888764 467888898887655544
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3e-05 Score=85.38 Aligned_cols=186 Identities=13% Similarity=0.198 Sum_probs=108.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKL-------------------FDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 214 (675)
+..+..++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+.+...-... |-.++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 44566789999999999999987665 46799999999999999999886532111 11112
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~ 292 (675)
.+..+....+.. +++++..... ... .+++-++|+|++..... .+.+...+.. -
T Consensus 92 EidaAs~~gVd~-IRelle~a~~----------------~P~-~gk~KVIIIDEad~Ls~~A~NALLKtLEE-------P 146 (709)
T PRK08691 92 EIDAASNTGIDN-IREVLENAQY----------------APT-AGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------P 146 (709)
T ss_pred EEeccccCCHHH-HHHHHHHHHh----------------hhh-hCCcEEEEEECccccCHHHHHHHHHHHHh-------C
Confidence 222222222211 1111111100 001 13567899999865421 2222111111 2
Q ss_pred CCCeEEEEecc-chhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 293 QRRCTIILTSR-RQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 293 ~~~s~ilvTtR-~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
...+++|++|. ...+.....+....+.+.+++.++....+.+.+.... ..--.+....|++.++|.+.-+..+
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 23455555554 3333322334446788999999999999988775322 1223457889999999988544433
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.20 E-value=1.9e-05 Score=83.20 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=101.3
Q ss_pred CccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+..+.|+++.++++.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch---
Confidence 34567899999999888764 1 224568999999999999999999977532 3 22211
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--ccccc-------CCCCcccccc--ccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVG-------IPSGDVKKER--MDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~-------~~~~~~~~~~--~~~ 292 (675)
.++.... .+ ........+.+......+.+|++|+++.... ..... ..+..++... +..
T Consensus 190 -~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111110 11 1112223333333334678999999965310 00000 0000000000 112
Q ss_pred CCCeEEEEeccchhHHhhh-c---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 293 QRRCTIILTSRRQDLLRNV-M---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
..+.+||.||......... . .....+.++..+.++..++|+.++......++. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 3467788888754322111 1 224578999999999999999887543222211 1457777777754
No 92
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.4e-05 Score=84.51 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=107.8
Q ss_pred cCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEE
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDK-------------------LFDKVAM 215 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 215 (675)
..+..++|.+..++.+.+++..++.. .+.++|..|+||||+|+.+.+...-.. .|...++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 44567889999999999998876655 468999999999999999988764211 1212233
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCC
Q 005834 216 AEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQ 293 (675)
Q Consensus 216 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~ 293 (675)
+..+....+.+ .++++..+.... ..+++-++|+|++.... ..+.+...+.. -.
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~~p-----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEe-------pp 147 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQYAP-----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-------PP 147 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhhCc-----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhC-------CC
Confidence 33222222221 122222221100 01456799999996543 22322222221 22
Q ss_pred CCeEEEEec-cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHHHH
Q 005834 294 RRCTIILTS-RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALITL 366 (675)
Q Consensus 294 ~~s~ilvTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 366 (675)
..+.+|++| ..+.+..........+++++++.++....+.+.+.... ...-++....|++.++|.+- |+..+
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345555444 44433222223356899999999999988887764221 12234567889999999874 44433
No 93
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=4.9e-06 Score=85.53 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=64.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC--CCHHHHHHHHHHHh-----CCCcccCcCHHHH-H
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN--PDHQKIQDKLASDL-----GIKFELNESIFDR-A 249 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l-----~~~~~~~~~~~~~-~ 249 (675)
+.-..++|+|.+|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+ +.+.......... .
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 345689999999999999999999988754 8999999999866 68899999984332 2211100001111 1
Q ss_pred HHHHHHHhccCeEEEEecCccc
Q 005834 250 NRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 250 ~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
.........+++.+|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 1222222357899999999954
No 94
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.20 E-value=1.5e-06 Score=90.03 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=107.7
Q ss_pred cCCCeEEecCCCCCcc-CCC-CcCC---CccceeEeccccCccc--ccchhhhcCC-CCccEEEecCCCCC-----CCcc
Q 005834 519 QEGPIAISLPYRGIQV-LPE-RLQC---PRLELLLLLEKGGGSM--PISDHFFDGT-EGLRVLNFTGIHFS-----SLPS 585 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~-~~~-~~~~---~~L~~L~l~~~~~~~~--~~~~~~~~~l-~~L~~L~l~~~~~~-----~lp~ 585 (675)
..+++.+.+.++.+.. .+. ...+ ++|+.|++..+..... ......+..+ ++|+.|++++|.++ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 4578899998887752 111 1122 5599999976653311 1112234556 89999999999987 3455
Q ss_pred ccccccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCC-----ccchhhcCCCCCCEecCcCcccCccc-c
Q 005834 586 SLGRLINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIE-----RLPLEFGQLTRLQLLDLSNCRRLEVI-T 653 (675)
Q Consensus 586 ~i~~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-p 653 (675)
.+..+.+|++|++++|.+.. +..+..+++|++|++++|.+. .++..+..+++|++|++++|. +... +
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence 56778899999999999874 234566789999999999875 455567888999999999987 4431 1
Q ss_pred hhhhh---ccCCccCEEeCcCCC
Q 005834 654 PNVIC---QSWLHLEVFGMAASR 673 (675)
Q Consensus 654 ~~~~~---~~L~~L~~L~l~~c~ 673 (675)
..+.. ...++|++|++++|.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCC
Confidence 22221 024799999999985
No 95
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=1e-06 Score=94.28 Aligned_cols=145 Identities=26% Similarity=0.360 Sum_probs=102.8
Q ss_pred CCeEEecCCCCCccCC-CCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEec
Q 005834 521 GPIAISLPYRGIQVLP-ERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLE 599 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 599 (675)
+++.+.+..+.+..++ ....+++|+.|.+..+.....+.. ...++.|+.|++++|.+..+|..++.+.+|.+|.++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL---LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhh---hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence 5667777777776664 344677777777755543322211 125677777778887777777766667778888887
Q ss_pred ccc-CCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 600 YCR-LKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 600 ~~~-l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+|. +..+..+.++.++..|.+.++.+..+|..++.+.+|+.|++++|. +..++. +. .+.+|++|++++.
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~-~~~~l~~L~~s~n 287 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS--LG-SLTNLRELDLSGN 287 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc--cc-ccCccCEEeccCc
Confidence 774 444777788888888888777777778888888888888888877 777776 33 5888888888764
No 96
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=6.4e-05 Score=79.45 Aligned_cols=182 Identities=13% Similarity=0.196 Sum_probs=104.1
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhcc------CCCCe-EEEEEeCCCCCHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTED------KLFDK-VAMAEVTENPDHQK 226 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~-~~wv~vs~~~~~~~ 226 (675)
|.....++|.+...+.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ..|.. ++-+.........+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34456778999999999999986554 478899999999999999998876431 11211 11111111111111
Q ss_pred HHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEec-c
Q 005834 227 IQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTS-R 303 (675)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTt-R 303 (675)
..++++.+.... .. +++-++++|++.... .++.+...+.. ....+.+|++| .
T Consensus 93 -i~~l~~~~~~~p----------------~~-~~~kiviIDE~~~l~~~~~~~ll~~le~-------~~~~~~~Il~~~~ 147 (367)
T PRK14970 93 -IRNLIDQVRIPP----------------QT-GKYKIYIIDEVHMLSSAAFNAFLKTLEE-------PPAHAIFILATTE 147 (367)
T ss_pred -HHHHHHHHhhcc----------------cc-CCcEEEEEeChhhcCHHHHHHHHHHHhC-------CCCceEEEEEeCC
Confidence 122222221100 11 245689999985442 23332211111 22344555444 3
Q ss_pred chhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 304 RQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 304 ~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
...+..........++.+++++++....+.+.+....- .--++..+.+++.++|.+-.
T Consensus 148 ~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 148 KHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred cccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHH
Confidence 33332222334568999999999999888887653211 12246788899999986643
No 97
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=6.1e-05 Score=83.87 Aligned_cols=183 Identities=14% Similarity=0.191 Sum_probs=111.0
Q ss_pred cCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhc---------------------cCCCCeE
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTE---------------------DKLFDKV 213 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 213 (675)
.....++|.+..++.+..++..+... .+.++|..|+||||+|+.+.+...- ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 44567889999999999999876665 4789999999999999998886531 123432
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCcccccccc
Q 005834 214 AMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 291 (675)
..+..+......++. +++.++.... . .+++-++|+|++.... .++.+...+..
T Consensus 93 ~~ld~~~~~~vd~Ir-~li~~~~~~P----------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEe------- 147 (614)
T PRK14971 93 HELDAASNNSVDDIR-NLIEQVRIPP----------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEE------- 147 (614)
T ss_pred EEecccccCCHHHHH-HHHHHHhhCc----------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhC-------
Confidence 233332222222222 2222222111 0 1345688999986553 23333322222
Q ss_pred CCCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 292 DQRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 292 ~~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
-..++.+| +||....+..........+++.+++.++....+.+.+.... ..--.+.+..|++.++|..--+..
T Consensus 148 pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 148 PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 22345554 45555555443445567899999999999988888765322 122245688999999997754433
No 98
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=6.1e-05 Score=73.93 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=96.0
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHH
Q 005834 167 VFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIF 246 (675)
Q Consensus 167 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~ 246 (675)
.+..+.++......+.+.|+|+.|+|||+|++.+++..... -..+.++++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~----------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW----------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------
Confidence 44445555444555789999999999999999999977643 33466766533100
Q ss_pred HHHHHHHHHHhccCeEEEEecCcccc---cccccccCCCCccccccccCCCCeEEEEeccchhHH--------hhhcCCc
Q 005834 247 DRANRLCRVLKNEERHLIILDNIWGE---LKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL--------RNVMNSQ 315 (675)
Q Consensus 247 ~~~~~l~~~l~~~k~~LlVlDdv~~~---~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va--------~~~~~~~ 315 (675)
....+.+.+.+ --+|++||+... ..|+.... ++++... ...+.++|+||+...-. ..-+...
T Consensus 87 -~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~lf---~l~n~~~-e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g 159 (235)
T PRK08084 87 -FVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMAIF---DLYNRIL-ESGRTRLLITGDRPPRQLNLGLPDLASRLDWG 159 (235)
T ss_pred -hhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHHHH---HHHHHHH-HcCCCeEEEeCCCChHHcCcccHHHHHHHhCC
Confidence 00112222221 248899999653 23332110 1111111 12234788888754211 1123455
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 316 KEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 316 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
..++++++++++-.+++.+.+... .-.--+++..-|++.+.|..-++.
T Consensus 160 ~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 160 QIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred ceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHH
Confidence 799999999999999998866432 122235677788888877554433
No 99
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.3e-06 Score=93.53 Aligned_cols=146 Identities=25% Similarity=0.288 Sum_probs=70.6
Q ss_pred CCeEEecCCCCCccCCCCcCCC--ccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 521 GPIAISLPYRGIQVLPERLQCP--RLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
....+.+..+.+..++...... +|+.|.+..+.....+ .-+..++.|+.|++++|.+..+|...+.++.|+.|.+
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchhhhh---hhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 3445555555555554444332 4555555444332221 1134455555555555555555554445555555555
Q ss_pred ccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 599 EYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 599 ~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++|++.. |..++.+.+|++|.+++|.+.+.|..+.++.++..|.+.+|. +..+|..+. .+++|+.|+++++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~--~l~~l~~L~~s~n 265 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIG--NLSNLETLDLSNN 265 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhc--cccccceeccccc
Confidence 5555555 333344444555555555444555555555555555544443 333333222 3555555555443
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.7e-05 Score=83.39 Aligned_cols=187 Identities=17% Similarity=0.186 Sum_probs=111.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-------------------eEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD-------------------KVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~ 214 (675)
+.....++|.+..++.|.+.+..++ ...+.++|..|+||||+|+.+++..--....+ .++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 3445567898888888888887655 46788899999999999999998764321110 022
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccc
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKE 288 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 288 (675)
++..+....+. .+..+.+.+. .+++-++|+|++.... .++.+...+..
T Consensus 92 eId~a~~~~Id----------------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE---- 145 (624)
T PRK14959 92 EIDGASNRGID----------------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE---- 145 (624)
T ss_pred EEecccccCHH----------------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc----
Confidence 22221111111 1122222211 2356799999996552 23333222211
Q ss_pred cccCCCCeEEEE-eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh-hHHHHH
Q 005834 289 RMDDQRRCTIIL-TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP-VALITL 366 (675)
Q Consensus 289 ~~~~~~~s~ilv-TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~ 366 (675)
-.....+|+ |+....+..........+++.+++.++....+.+.+.... ..--.+.++.|++.++|.+ .|+..+
T Consensus 146 ---P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lL 221 (624)
T PRK14959 146 ---PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLL 221 (624)
T ss_pred ---cCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 223444555 4444444433334456889999999999988888664321 1123457888999999965 677776
Q ss_pred HHHHh
Q 005834 367 AKALK 371 (675)
Q Consensus 367 ~~~L~ 371 (675)
...+.
T Consensus 222 eqll~ 226 (624)
T PRK14959 222 GQVLA 226 (624)
T ss_pred HHHHH
Confidence 65543
No 101
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=5.5e-05 Score=86.47 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=107.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCC---------------------Ce
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLF---------------------DK 212 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~ 212 (675)
+..+..++|.+..++.|..++..+++. .+.++|..|+||||+|+.+.+...-.... -.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 344567889999999999999876665 57899999999999999998877421111 01
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHH----hccCeEEEEecCccccc--ccccccCCCCccc
Q 005834 213 VAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVL----KNEERHLIILDNIWGEL--KFDEVGIPSGDVK 286 (675)
Q Consensus 213 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~ 286 (675)
++++.......+.+ +..+.+.+ ..++.-++|||++.... .++.+...+.+
T Consensus 91 v~eidaas~~~Vd~----------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-- 146 (824)
T PRK07764 91 VTEIDAASHGGVDD----------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-- 146 (824)
T ss_pred EEEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC--
Confidence 22222211111211 11222211 12345588899997653 23333222222
Q ss_pred cccccCCCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 287 KERMDDQRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 287 ~~~~~~~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
-...+.+| +||....+..........|++..++.++..+.+.+.+.... ..--.+....|++.++|.+..+
T Consensus 147 -----pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 147 -----PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred -----CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 23345555 45444445443445567899999999999888887764221 1122446678999999988433
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=8.9e-05 Score=79.72 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
..-+.|+|..|+|||+|++.+++.......-..+++++ ..++...+...++... +....+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc--
Confidence 35688999999999999999999765432223455553 3456666666654210 12333444444
Q ss_pred CeEEEEecCccccc---ccc-cccCCCCccccccccCCCCeEEEEeccchhHH--------hhhcCCcceEecCCCCHHH
Q 005834 260 ERHLIILDNIWGEL---KFD-EVGIPSGDVKKERMDDQRRCTIILTSRRQDLL--------RNVMNSQKEIQIDALSKEE 327 (675)
Q Consensus 260 k~~LlVlDdv~~~~---~~~-~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va--------~~~~~~~~~~~l~~L~~~e 327 (675)
+.-+||+||+.... .+. .+...+ +.+ ...|..||+|+...... ...+..+-.+.+++++.++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~----N~~--~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIF----NNF--IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHH----HHH--HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 34589999996442 121 121111 111 23345688886543211 1123455688899999999
Q ss_pred HHHHHHHHhCCCCC-CCCchHHHHHHHHHhCCChhHHHHHHHHH
Q 005834 328 ALHLFQKIVGDSMK-TSAFQPIAHEIVGRCGELPVALITLAKAL 370 (675)
Q Consensus 328 ~~~Lf~~~~~~~~~-~~~l~~~~~~I~~~c~GlPLai~~~~~~L 370 (675)
-..++.+.+..... ..--+++..-|++.++|.|-.+.-+...+
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 99999998853221 12336788999999999997766655444
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=7.6e-05 Score=82.53 Aligned_cols=201 Identities=9% Similarity=0.121 Sum_probs=111.8
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCC--eEEEEEeCCCCCHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFD--KVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i 231 (675)
|..+..++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++...-..... ...+- ....-.-...|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 445667899999999999999866654 688999999999999999998764221110 00000 00000111111
Q ss_pred HHHhCCCcc----cCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE-
Q 005834 232 ASDLGIKFE----LNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL- 300 (675)
Q Consensus 232 ~~~l~~~~~----~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv- 300 (675)
...-+.+.- ......+.+..+.+.+. .+++-++|+|++.... ..+.+...+.+ -..++.+|+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-------Pp~~~~fIl~ 168 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHVKFIFA 168 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-------CCCCeEEEEE
Confidence 111111000 00011112222322222 1345689999986543 23333222222 234555554
Q ss_pred eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 301 TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 301 TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
|+....+..........+.+.+++.++....+.+.+.... ..--.+....|++.++|.+.-+....
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5444444433344556899999999999999988775321 11224677889999999986554443
No 104
>PF14516 AAA_35: AAA-like domain
Probab=98.10 E-value=0.00017 Score=74.64 Aligned_cols=211 Identities=13% Similarity=0.142 Sum_probs=123.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-----CCHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-----PDHQKIQD 229 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~ 229 (675)
+.+.+.++.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+..... .+ .++++++..- .+...+++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHH
Confidence 344556778987777777777653 4689999999999999999999988754 23 4557776542 24555555
Q ss_pred HH----HHHhCCCccc-------CcCHHHHHHHHHHHHh--ccCeEEEEecCcccccccccccCCCCccccccccC----
Q 005834 230 KL----ASDLGIKFEL-------NESIFDRANRLCRVLK--NEERHLIILDNIWGELKFDEVGIPSGDVKKERMDD---- 292 (675)
Q Consensus 230 ~i----~~~l~~~~~~-------~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~---- 292 (675)
.+ .++++.+... ..+.......+.+.+. .+++.+|++|+++.......+...|-.++..+...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 44 4555543211 0112223333444332 14799999999965422111100000000000000
Q ss_pred -CCCe--EEEEeccchhHH----hhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 293 -QRRC--TIILTSRRQDLL----RNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 293 -~~~s--~ilvTtR~~~va----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
.... -|++.+...... ..-......++|++++.+|...|..++-.. --....++|...+||+|.-+..
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHH
Confidence 0111 122222111111 111233458899999999999999887422 1123388999999999999999
Q ss_pred HHHHHhcC
Q 005834 366 LAKALKNM 373 (675)
Q Consensus 366 ~~~~L~~~ 373 (675)
++..+...
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999753
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=9e-05 Score=72.63 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=88.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
...+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhhC
Confidence 3678999999999999999999876533 23466776432 1110 11233334321
Q ss_pred CeEEEEecCcccc---ccccc-ccCCCCccccccccCCCCeEEEEeccchhHH-h-------hhcCCcceEecCCCCHHH
Q 005834 260 ERHLIILDNIWGE---LKFDE-VGIPSGDVKKERMDDQRRCTIILTSRRQDLL-R-------NVMNSQKEIQIDALSKEE 327 (675)
Q Consensus 260 k~~LlVlDdv~~~---~~~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va-~-------~~~~~~~~~~l~~L~~~e 327 (675)
=+||+||+... ..|+. +...+. .+ ...|..+|+|++..... . ..+.....+++++++.++
T Consensus 99 --d~LiiDDi~~~~~~~~~~~~Lf~l~n----~~--~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 99 --ELVCLDDLDVIAGKADWEEALFHLFN----RL--RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDED 170 (234)
T ss_pred --CEEEEechhhhcCChHHHHHHHHHHH----HH--HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHH
Confidence 37889999643 23433 211111 11 23466788888754321 0 112334688999999999
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 328 ALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
-...++.++.... -.--+++..-|++.+.|..-.+
T Consensus 171 ~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l 205 (234)
T PRK05642 171 KLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSAL 205 (234)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHH
Confidence 9999986654321 1122467777777777755433
No 106
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.09 E-value=2.5e-05 Score=77.32 Aligned_cols=174 Identities=11% Similarity=0.199 Sum_probs=105.9
Q ss_pred CccccccHHHHHHH---HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQD---VLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 157 ~~~~~~gr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
...++||.+..+-+ |.+.+..+..+-+.+||++|+||||||+.+.+..+... ..||..|....-..-.++|.+
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 34455666554322 33444567888899999999999999999999877542 567877765544443444443
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE--eccchhH--
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL--TSRRQDL-- 307 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v-- 307 (675)
+... ...+ .++|.+|++|.|..-. +.+.+ +|. -.+|.-++| ||.+...
T Consensus 212 ~aq~---------------~~~l-~krkTilFiDEiHRFNksQQD~f---LP~-------VE~G~I~lIGATTENPSFql 265 (554)
T KOG2028|consen 212 QAQN---------------EKSL-TKRKTILFIDEIHRFNKSQQDTF---LPH-------VENGDITLIGATTENPSFQL 265 (554)
T ss_pred HHHH---------------HHhh-hcceeEEEeHHhhhhhhhhhhcc---cce-------eccCceEEEecccCCCccch
Confidence 3210 1112 2578999999995432 33333 222 345666665 5554322
Q ss_pred HhhhcCCcceEecCCCCHHHHHHHHHHHhC---CC------CCCCC---chHHHHHHHHHhCCCh
Q 005834 308 LRNVMNSQKEIQIDALSKEEALHLFQKIVG---DS------MKTSA---FQPIAHEIVGRCGELP 360 (675)
Q Consensus 308 a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~------~~~~~---l~~~~~~I~~~c~GlP 360 (675)
.........++.|++|+.++...++.+... +. .+.+. ...+.+-++..|.|-.
T Consensus 266 n~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 266 NAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 122445667999999999999998887432 11 11111 2345666777777765
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=9.7e-05 Score=81.84 Aligned_cols=199 Identities=13% Similarity=0.167 Sum_probs=108.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE-eCCCCCHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAE-VTENPDHQKIQDKLA 232 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~ 232 (675)
|.....++|.+..+..|.+++..+... .+.++|+.|+||||+|+.+++..--...++.-.|.. +......-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 345667889999999999988776654 488999999999999999988764322111001110 000000001111111
Q ss_pred HHhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEE-EEe
Q 005834 233 SDLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTI-ILT 301 (675)
Q Consensus 233 ~~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i-lvT 301 (675)
..-..+. +. .....+.+..+.+.+. .+++-++|+|++.... ..+.+...+.. -...+.+ ++|
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-------Pp~~tv~IL~t 164 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-------PPPHAIFIFAT 164 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-------CCCCeEEEEEe
Confidence 1000000 00 0011122223333331 1345688999986543 23333222221 2233444 455
Q ss_pred ccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh
Q 005834 302 SRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV 361 (675)
Q Consensus 302 tR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 361 (675)
++...+..........+++.+++.++....+.+.+.... ..--.+.++.|++.++|..-
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHH
Confidence 555555443445567999999999998888877664221 11224578899999999664
No 108
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00077 Score=75.33 Aligned_cols=200 Identities=13% Similarity=0.128 Sum_probs=111.0
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
+.....++|.+..++.|..++..+.. +.+.++|..|+||||+|+.+++......... -...++.-...+.|..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 34456788999999999888876554 4568999999999999999998764211100 0001111122222322
Q ss_pred HhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEec-
Q 005834 234 DLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTS- 302 (675)
Q Consensus 234 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTt- 302 (675)
..+.+. .. .....+....+.+.+. .+++-++|+|++.... ..+.+...+.. ....+.+|++|
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-------pp~~tv~Il~t~ 158 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-------PPPHAIFILATT 158 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-------CCCCeEEEEEeC
Confidence 221110 00 0011112222322222 1356789999986442 23333222211 22345555554
Q ss_pred cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHH
Q 005834 303 RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAK 368 (675)
Q Consensus 303 R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 368 (675)
....+..........+.+.+++.++....+.+.+..... .--.+.+..|++.++|.+..+...-.
T Consensus 159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 333333323344568889999999998888887653221 12246788999999998865544433
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=5.7e-05 Score=79.91 Aligned_cols=180 Identities=19% Similarity=0.248 Sum_probs=99.3
Q ss_pred CccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+..+.|+++.++++.+.+. . ..++-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 34467899999988887653 1 245678999999999999999999976522 222221
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc---------cccCCCCccccc--cccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD---------EVGIPSGDVKKE--RMDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~--~~~~ 292 (675)
.++.... .+ ........+.+......+.+|+|||++....-. .+...+..++.. ....
T Consensus 199 -~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SELVQKF---IG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHHhHhh---cc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111110 01 111223334444333467899999996531000 000000000000 0112
Q ss_pred CCCeEEEEeccchhHHhhh-cC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 293 QRRCTIILTSRRQDLLRNV-MN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
..+..||.||......... .. -...+++++.+.++-.++|+.+.......... ....+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCC
Confidence 3456777777654332211 21 23579999999999999999887533222211 145666666664
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.05 E-value=4.2e-05 Score=74.93 Aligned_cols=174 Identities=9% Similarity=0.087 Sum_probs=95.2
Q ss_pred ccccc-cHHH-HHHHHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 158 YEAFD-SRKK-VFQDVLEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 158 ~~~~~-gr~~-~~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
.+.|+ |... .+..+.++.. ....+.+.|+|..|+|||+||+.+++.....+ ....+++..... ..
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~------~~---- 84 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPL------LA---- 84 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhH------HH----
Confidence 33444 4433 3344444433 23456789999999999999999999864321 234455433211 00
Q ss_pred hCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc--cccCCCCccccccccCCCCe-EEEEeccchhHHhh-
Q 005834 235 LGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD--EVGIPSGDVKKERMDDQRRC-TIILTSRRQDLLRN- 310 (675)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~~s-~ilvTtR~~~va~~- 310 (675)
+ ... ...-++|+||+.....+. .+...+.. . ...+. .+|+|++.......
T Consensus 85 ~------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~----~--~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 85 F------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNR----V--RAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred H------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHH----H--HHcCCcEEEEeCCCCHHhCCC
Confidence 0 011 123578899996543221 11111110 0 12333 46666664322110
Q ss_pred ------hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHH
Q 005834 311 ------VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKAL 370 (675)
Q Consensus 311 ------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 370 (675)
.+.....++++++++++-..++.+.+.... ..--++....+++.+.|.+..+..+...+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122346899999999887777776543211 22234577888888888887776666554
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00011 Score=81.81 Aligned_cols=180 Identities=14% Similarity=0.204 Sum_probs=106.8
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCC---CC-------------eEEEEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKL---FD-------------KVAMAE 217 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~-------------~~~wv~ 217 (675)
|.....++|.+..++.+.+++..+++ +.+.++|+.|+||||+|+.+++..--... +. .++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 34556788999999999999986654 45679999999999999999876532110 00 011111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCcccccccc
Q 005834 218 VTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 291 (675)
...... .+..+.+.+.+. .+++-++|+|++.... .++.+...+..
T Consensus 94 aasn~~----------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE------- 144 (725)
T PRK07133 94 AASNNG----------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE------- 144 (725)
T ss_pred ccccCC----------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-------
Confidence 111111 122223333322 1355689999986542 23333222211
Q ss_pred CCCCeE-EEEeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 292 DQRRCT-IILTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 292 ~~~~s~-ilvTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
-...+. |++|+....+..........+++.+++.++....+...+.... ..--.+.++.|++.++|.+--+.
T Consensus 145 PP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 222334 5556655555443444557999999999999988887654221 11224567889999999774333
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00013 Score=80.18 Aligned_cols=185 Identities=14% Similarity=0.141 Sum_probs=110.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccE-EEEEcCCCCcHHHHHHHHHHHhhccCCC---------------------Ce
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNI-IGVYGMGGVGKTTLVKQVAKQVTEDKLF---------------------DK 212 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~ 212 (675)
|..+..++|.+..++.|.+++..+.... +.++|+.|+||||+|+.+++...-.... -.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 4456678899999999999998766654 6899999999999999999875421111 01
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccc
Q 005834 213 VAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVK 286 (675)
Q Consensus 213 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~ 286 (675)
++.+..+....+ +....+.+.+. .+++-++|+|++.... ..+.+...+..
T Consensus 89 vieidaas~~gv----------------------d~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-- 144 (584)
T PRK14952 89 VVELDAASHGGV----------------------DDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-- 144 (584)
T ss_pred EEEeccccccCH----------------------HHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--
Confidence 122222111111 11222222211 1345688999986542 23332222222
Q ss_pred cccccCCCCeE-EEEeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHH
Q 005834 287 KERMDDQRRCT-IILTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALI 364 (675)
Q Consensus 287 ~~~~~~~~~s~-ilvTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~ 364 (675)
-...+. |++||....+..........+++.+++.++..+.+.+.+.... ..--.+....|++.++|.+- ++.
T Consensus 145 -----pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln 218 (584)
T PRK14952 145 -----PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLS 218 (584)
T ss_pred -----CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 223444 4455555555443445567899999999999888888765322 11224567788999999874 444
Q ss_pred HHHHH
Q 005834 365 TLAKA 369 (675)
Q Consensus 365 ~~~~~ 369 (675)
.+-.+
T Consensus 219 ~Ldql 223 (584)
T PRK14952 219 VLDQL 223 (584)
T ss_pred HHHHH
Confidence 44443
No 113
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00015 Score=78.59 Aligned_cols=187 Identities=13% Similarity=0.158 Sum_probs=109.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCC------------------C-CeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKL------------------F-DKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F-~~~~ 214 (675)
|.....++|.+...+.+..++..+... ...++|..|+||||+|+.+.+..-.... + ..++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345567889999999999988866665 5589999999999999998887532110 1 1122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccC
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDD 292 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~ 292 (675)
.+..+....+.++. +++....... . .+++-++|+|++.... ..+.+...+.. -
T Consensus 90 eldaas~~gId~IR-elie~~~~~P----------------~-~~~~KVvIIDEad~Lt~~A~NALLK~LEE-------p 144 (535)
T PRK08451 90 EMDAASNRGIDDIR-ELIEQTKYKP----------------S-MARFKIFIIDEVHMLTKEAFNALLKTLEE-------P 144 (535)
T ss_pred EeccccccCHHHHH-HHHHHHhhCc----------------c-cCCeEEEEEECcccCCHHHHHHHHHHHhh-------c
Confidence 22222211222221 1211111000 0 1345688999986542 22222222211 2
Q ss_pred CCCeEEEEeccc-hhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 293 QRRCTIILTSRR-QDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 293 ~~~s~ilvTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
...+++|++|.+ ..+..........+++.+++.++....+.+.+.... ..--++.++.|++.++|.+--+....
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 345665555544 333222334457899999999999998887765322 12235678899999999985544443
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.02 E-value=8.9e-05 Score=85.87 Aligned_cols=185 Identities=10% Similarity=0.149 Sum_probs=105.3
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEE-EEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL----FDKVAM-AEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~ 230 (675)
....+++||++++.+++..|......-+.++|.+|+||||+|+.+++....... .+..+| +.++.-.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-------- 255 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-------- 255 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh--------
Confidence 445678999999999999988666667779999999999999999998753321 122333 3322100
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHh-ccCeEEEEecCcccccc------cccccCCCCccccccccCCCCeEEEEecc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLK-NEERHLIILDNIWGELK------FDEVGIPSGDVKKERMDDQRRCTIILTSR 303 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~------~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (675)
...............+.+.+. .+++.+|++|++..... -.+. .++++-.+ ....-++|-||.
T Consensus 256 ------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~n~Lkp~l-~~G~l~~IgaTT 324 (852)
T TIGR03345 256 ------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA----ANLLKPAL-ARGELRTIAATT 324 (852)
T ss_pred ------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccH----HHHhhHHh-hCCCeEEEEecC
Confidence 000001122233344444443 24679999999865421 0110 00111111 223455666665
Q ss_pred chhHH------hhhcCCcceEecCCCCHHHHHHHHHHHhCC---CCCCCCchHHHHHHHHHhCCC
Q 005834 304 RQDLL------RNVMNSQKEIQIDALSKEEALHLFQKIVGD---SMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 304 ~~~va------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~l~~~~~~I~~~c~Gl 359 (675)
..+.. .........+.+++++.+++.+++...... .....-..+....+++.+.+.
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 53221 112234568999999999999997654431 111122345666777777654
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=5.9e-05 Score=78.01 Aligned_cols=149 Identities=14% Similarity=0.203 Sum_probs=84.9
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|.+...+.+..++..+.. .++.++|.+|+||||+|+.+++.... ....++.+. .....+...+..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i~~~l~~ 90 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFVRNRLTR 90 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHHHHHHHH
Confidence 45566788999999999999876554 56666999999999999999887531 123444443 222111111111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHh-ccCeEEEEecCccccc--cc-ccccCCCCccccccccCCCCeEEEEeccchhH-H
Q 005834 234 DLGIKFELNESIFDRANRLCRVLK-NEERHLIILDNIWGEL--KF-DEVGIPSGDVKKERMDDQRRCTIILTSRRQDL-L 308 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~--~~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-a 308 (675)
+ ..... .+.+-++|+||+.... .. ..+...+.. ...++++|+||..... .
T Consensus 91 -~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-------~~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 91 -F-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-------YSKNCSFIITANNKNGII 145 (316)
T ss_pred -H-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-------cCCCceEEEEcCChhhch
Confidence 0 00000 1245688999996441 11 111111111 2456778888864332 1
Q ss_pred hhhcCCcceEecCCCCHHHHHHHHHH
Q 005834 309 RNVMNSQKEIQIDALSKEEALHLFQK 334 (675)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (675)
.........+.++..+.++...++..
T Consensus 146 ~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 22223345677777788877766554
No 116
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.01 E-value=0.0001 Score=84.76 Aligned_cols=167 Identities=16% Similarity=0.244 Sum_probs=94.5
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccC---CC-CeEEEEEeCCCCCHHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK---LF-DKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
...+++||+++++++++.|......-+.++|.+|+|||++|+.+++...... .+ +..+|.. +...+.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~---- 250 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL---- 250 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh----
Confidence 4457899999999999988766666678999999999999999999874321 11 3334421 111111
Q ss_pred HHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc-ccC--CCCccccccccCCCCeEEEEeccchhH--
Q 005834 233 SDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE-VGI--PSGDVKKERMDDQRRCTIILTSRRQDL-- 307 (675)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-~~~--~~~~~~~~~~~~~~~s~ilvTtR~~~v-- 307 (675)
... .. ....++....+.+.+...++.+|++|++.....-.. -.. ...++++..+.. ..-++|-+|...+.
T Consensus 251 a~~--~~--~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 251 AGT--KY--RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-GKLRCIGSTTYEEYKN 325 (731)
T ss_pred hhc--cc--cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-CCeEEEEecCHHHHHH
Confidence 000 00 112334455555555444678999999864311000 000 000111111112 23445555543221
Q ss_pred ----HhhhcCCcceEecCCCCHHHHHHHHHHHhC
Q 005834 308 ----LRNVMNSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 308 ----a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
..........+++++++.++..++++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 111223346899999999999999987553
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00026 Score=76.69 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=106.6
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTED-------------------KLFDKVA 214 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 214 (675)
|.....++|.+..+..+.+++..+... .+.++|+.|+||||+|+.++....-. +.|...+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 344556789999999999999866554 46789999999999999998865310 0111122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccc
Q 005834 215 MAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKE 288 (675)
Q Consensus 215 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~ 288 (675)
++..+...... ....+.+... .+++-++|+|++.... ..+.+...+..
T Consensus 92 eidaas~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe---- 145 (486)
T PRK14953 92 EIDAASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE---- 145 (486)
T ss_pred EEeCccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc----
Confidence 33222211111 1122222221 1356799999986442 22222222211
Q ss_pred cccCCCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 289 RMDDQRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 289 ~~~~~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
......+| .||+...+..........+.+.+++.++....+.+.+.... ..--.+.+..|++.++|.+-.+....
T Consensus 146 ---pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 146 ---PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred ---CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22234444 45554444332334456899999999999888888764221 12224567889999999776554444
No 118
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=9.1e-06 Score=56.07 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=20.2
Q ss_pred CccEEEecCCCCCCCccccccccCCCEEEeccccCCC
Q 005834 569 GLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD 605 (675)
Q Consensus 569 ~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~ 605 (675)
+|++|++++|.++.+|..+++|++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4556666666666555555555555555555555544
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.98 E-value=8e-05 Score=72.09 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=91.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
...+.|+|..|+|||.|.+.+++.......=..+++++ ..++...+...+... ....+.+.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~~- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLRS- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHCT-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhhc-
Confidence 45689999999999999999999876543223466764 345555665555321 12345555553
Q ss_pred CeEEEEecCcccccc---cccccCCCCccccccccCCCCeEEEEeccchhHH--------hhhcCCcceEecCCCCHHHH
Q 005834 260 ERHLIILDNIWGELK---FDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL--------RNVMNSQKEIQIDALSKEEA 328 (675)
Q Consensus 260 k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va--------~~~~~~~~~~~l~~L~~~e~ 328 (675)
-=+|++||+..... |++. +-.+++.+ ...|.++|+|+...... ...+...-.+++++++.++-
T Consensus 98 -~DlL~iDDi~~l~~~~~~q~~---lf~l~n~~--~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 98 -ADLLIIDDIQFLAGKQRTQEE---LFHLFNRL--IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp -SSEEEEETGGGGTTHHHHHHH---HHHHHHHH--HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred -CCEEEEecchhhcCchHHHHH---HHHHHHHH--HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 45899999976532 2221 11111111 23466899998653211 11234566899999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh
Q 005834 329 LHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV 361 (675)
Q Consensus 329 ~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 361 (675)
..++.+.+....- +--+++++-|++.+.+..-
T Consensus 172 ~~il~~~a~~~~~-~l~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 172 RRILQKKAKERGI-ELPEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHTTSSHH
T ss_pred HHHHHHHHHHhCC-CCcHHHHHHHHHhhcCCHH
Confidence 9999988752211 1224566666666655443
No 120
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=4.7e-06 Score=93.50 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=101.2
Q ss_pred cCCCeEEecCCCCCc--cCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCC
Q 005834 519 QEGPIAISLPYRGIQ--VLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~ 594 (675)
..+++++.+.+...- ..+. ...+|+|++|.+.+-...... ....+.++++|+.||+++++++.+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 456777777664331 1111 236899999999643322222 334578899999999999999988 6899999999
Q ss_pred EEEeccccCCC---cccccCCCCCcEEEeeCCCCCccch-------hhcCCCCCCEecCcCcccCcccchhhhhccCCcc
Q 005834 595 TLCLEYCRLKD---IVIVGQLKKLEILSFRGSDIERLPL-------EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHL 664 (675)
Q Consensus 595 ~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~-------~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L 664 (675)
.|.+.+-.+.. ...+.+|++|+.||+|......-|. .-..|++||.||.++..--..+-..+.. ..++|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNL 277 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccH
Confidence 99988877664 5688899999999999875443332 1234899999999985522223333333 45666
Q ss_pred CEEeC
Q 005834 665 EVFGM 669 (675)
Q Consensus 665 ~~L~l 669 (675)
+.+..
T Consensus 278 ~~i~~ 282 (699)
T KOG3665|consen 278 QQIAA 282 (699)
T ss_pred hhhhh
Confidence 65543
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.1e-05 Score=55.61 Aligned_cols=39 Identities=36% Similarity=0.528 Sum_probs=22.4
Q ss_pred CCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccc
Q 005834 614 KLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 614 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 653 (675)
+|++|++++|+|+.+|..+++|++|+.|++++|. +..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666556666666666666654 44444
No 122
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.0011 Score=68.41 Aligned_cols=210 Identities=14% Similarity=0.096 Sum_probs=132.2
Q ss_pred cCccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
..+...+||+.++..+.+|+. ....+-+-|.|-+|.|||.+...++.+......=-+++++.+..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345567899999999998876 3456788999999999999999999987643222345777776656777888888
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHHhccC-eEEEEecCcccccc--cccccCCCCccccccccCCCCeEEEEeccch---
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVLKNEE-RHLIILDNIWGELK--FDEVGIPSGDVKKERMDDQRRCTIILTSRRQ--- 305 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~--- 305 (675)
...+-..........+....+.++..+.+ .+|+|+|..+.... -..+...|. ++.-+++++|+.---.
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFe------wp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFE------WPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehh------cccCCcceeeeeeehhhhh
Confidence 87772222112233556667777776544 78999998854321 011111110 1134556655432111
Q ss_pred ----hHHh--h-hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 306 ----DLLR--N-VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 306 ----~va~--~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
.... . ..-....+.-+|-+.++-.++|..+..............+-+++||.|.-=-+..+-...+
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1100 0 1123457778899999999999999876555555556777777787776544444444443
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.93 E-value=9.4e-05 Score=72.06 Aligned_cols=189 Identities=16% Similarity=0.151 Sum_probs=118.1
Q ss_pred cccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeE-EEEEeCCCCCHHHHHHHHH
Q 005834 154 QVKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKV-AMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 154 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~i~ 232 (675)
.|.....+.|.+..+..+.+.+.....++...+|++|.|||+-|..++...-..+.|.+. .=.++|....+.-+-..+-
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 455667788999999999999888778899999999999999999999887666667553 3345554433221111110
Q ss_pred HHhCCCcccCcCHHHHHHHHHHHHh-ccCe-EEEEecCcccc--cccccccCCCCccccccccCCCCeEEE-EeccchhH
Q 005834 233 SDLGIKFELNESIFDRANRLCRVLK-NEER-HLIILDNIWGE--LKFDEVGIPSGDVKKERMDDQRRCTII-LTSRRQDL 307 (675)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~-~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~il-vTtR~~~v 307 (675)
+............. .-++ -.+|||+++.. +.|..+.....+ ....++.+ ||+--..+
T Consensus 111 -----------~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-------~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 111 -----------NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-------FSRTTRFILICNYLSRI 172 (346)
T ss_pred -----------CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-------cccceEEEEEcCChhhC
Confidence 00000000000000 0123 37889998765 467776554444 44555644 45444333
Q ss_pred HhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh
Q 005834 308 LRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV 361 (675)
Q Consensus 308 a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 361 (675)
..........+.-++|.+++...-++..+..+.-. --.+..+.|++.++|.--
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~-~d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD-IDDDALKLIAKISDGDLR 225 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCcHH
Confidence 33334445678999999999999999888643222 224567899999998543
No 124
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.91 E-value=0.00017 Score=72.35 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=103.9
Q ss_pred cccccHHHHHHHHHHHhccCC---ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 005834 159 EAFDSRKKVFQDVLEALKDDK---LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDL 235 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (675)
+.|.+|+.++..+...+.+.. +..|.|+|..|.|||.+.+.+.+.... .-+|+++-+.++.+.++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 356689999999998887433 345689999999999999999998842 258999999999999999999999
Q ss_pred C-CCcccCcCH--HHHHHHHHHHH------hc-cCeEEEEecCcccccccccccCCCCcccccc-ccCCCCeEEEEeccc
Q 005834 236 G-IKFELNESI--FDRANRLCRVL------KN-EERHLIILDNIWGELKFDEVGIPSGDVKKER-MDDQRRCTIILTSRR 304 (675)
Q Consensus 236 ~-~~~~~~~~~--~~~~~~l~~~l------~~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~-~~~~~~s~ilvTtR~ 304 (675)
+ .+.++.... .+........+ .+ ++.++||||+++...+.+.+ .++.+++.. +-..+.. +|+++-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~--ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAI--LLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchH--HHHHHHHHHHHhCCCce-EEEEecc
Confidence 6 222211111 12222222222 11 35899999999776554442 111111111 0122333 3344333
Q ss_pred hhHHhhh--cCCc--ceEecCCCCHHHHHHHHHHH
Q 005834 305 QDLLRNV--MNSQ--KEIQIDALSKEEALHLFQKI 335 (675)
Q Consensus 305 ~~va~~~--~~~~--~~~~l~~L~~~e~~~Lf~~~ 335 (675)
....... ++.. .++..+.-+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2221111 3333 36677788888888888664
No 125
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00049 Score=74.05 Aligned_cols=184 Identities=13% Similarity=0.158 Sum_probs=105.5
Q ss_pred cCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC---------------------CCCeE
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDK---------------------LFDKV 213 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~ 213 (675)
.....++|.+..++.+.+++..+.. +.+.++|..|+||||+|+.+++...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 4456788999999999999886665 5678999999999999999988764211 122 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCcccccccc
Q 005834 214 AMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 291 (675)
+++.........++ +++.+.+.. ... .+++-++|+|++.... ..+.+...+.+
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~~----------------~~~-~~~~kvvIIdead~lt~~~~n~LLk~lEe------- 147 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVLF----------------TPS-KSRYKIYIIDEVHMLTKEAFNSLLKTLEE------- 147 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHHh----------------hhh-cCCCEEEEEecHHhhCHHHHHHHHHHhhc-------
Confidence 12211111111111 112111110 001 1356788999985442 22222222211
Q ss_pred CCCCeEEEEec-cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHHHH
Q 005834 292 DQRRCTIILTS-RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALITL 366 (675)
Q Consensus 292 ~~~~s~ilvTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 366 (675)
...++.+|++| +...+..........+++.++++++....+.+.+.... ..--++.++.|++.++|.+- |+..+
T Consensus 148 p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 148 PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22345555554 33333332334456899999999999888887764221 11234578899999999764 44443
No 126
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.0004 Score=76.54 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=108.4
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDK--------------------LFDKV 213 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 213 (675)
|.....++|.+..++.+..++.++... .+.++|..|+||||+|+.+++..--.. +++.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv- 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV- 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-
Confidence 345567889999999999999866554 578999999999999999988764211 1211
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCcccc
Q 005834 214 AMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKK 287 (675)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 287 (675)
+++.......+. ....+.+.+. .+++-++|+|++.... .++.+...+..
T Consensus 91 ~~idgas~~~vd----------------------dIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe--- 145 (563)
T PRK06647 91 IEIDGASNTSVQ----------------------DVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE--- 145 (563)
T ss_pred EEecCcccCCHH----------------------HHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc---
Confidence 122111111111 1112221111 1355689999986543 23443333322
Q ss_pred ccccCCCCeEEEEec-cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 288 ERMDDQRRCTIILTS-RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 288 ~~~~~~~~s~ilvTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
-...+.+|++| ....+..........++..+++.++....+.+.+.... .+--++.+..|++.++|.+-.+...
T Consensus 146 ----pp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 146 ----PPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ----CCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 23445555544 44444333334456799999999999888888764321 2223567788999999988544333
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.90 E-value=0.00017 Score=83.90 Aligned_cols=187 Identities=15% Similarity=0.246 Sum_probs=103.3
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC---C-CeEEEEEeCCCCCHHHHHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL---F-DKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
..+++||+++++.+++.|......-+.++|.+|+|||++|+.++........ . +..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 4567899999999999998655566779999999999999999988653211 1 234442 1 2211111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccc-c-CCCCccccccccCCCCeEEEEeccchhHH---
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEV-G-IPSGDVKKERMDDQRRCTIILTSRRQDLL--- 308 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~ilvTtR~~~va--- 308 (675)
+... ....++....+.+.+...++.+|++|++.....-..- + ....++++..+.. ..-++|.+|......
T Consensus 249 --g~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 --GTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHI 323 (821)
T ss_pred --cCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHH
Confidence 1111 1223445555655555456799999999543110000 0 0001111111112 234555555544321
Q ss_pred ---hhhcCCcceEecCCCCHHHHHHHHHHHhC---CCCCCCCchHHHHHHHHHhCC
Q 005834 309 ---RNVMNSQKEIQIDALSKEEALHLFQKIVG---DSMKTSAFQPIAHEIVGRCGE 358 (675)
Q Consensus 309 ---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~l~~~~~~I~~~c~G 358 (675)
.........+.+...+.++...++..... ......--.++...+++.++|
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 11223445788999999998888765432 111111223455666666654
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00044 Score=77.09 Aligned_cols=200 Identities=12% Similarity=0.127 Sum_probs=110.1
Q ss_pred cCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
.....++|.+.....|..++..+.. +.+.++|..|+||||+|+.+++..--...... .......-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-----~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-----TPEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-----CCCCCcccHHHHHHhcC
Confidence 4455678999999999998886553 57789999999999999999998653211100 00011111222222222
Q ss_pred hCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEE-Eecc
Q 005834 235 LGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTII-LTSR 303 (675)
Q Consensus 235 l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il-vTtR 303 (675)
.+.+. .. .....+....+.+.+. .+++-++|+|++.... .++.+...+.. -...+.+| +|+.
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-------Pp~~tvfIL~t~~ 160 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-------PPPRVVFVLATTD 160 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-------CCcCeEEEEEeCC
Confidence 11110 00 0011122222222221 1345688999986542 23333222221 22334444 4554
Q ss_pred chhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHH
Q 005834 304 RQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAK 368 (675)
Q Consensus 304 ~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 368 (675)
...+..........+++..++.++....+.+.+..... .--.+.+..|++.++|.+..+.....
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44443333444568888999999988888776653211 11235688999999998865544433
No 129
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.0005 Score=76.06 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=106.8
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|.+..++.+.+++..+.. +.+.++|+.|+||||+|+.+.+..-....-+ ....+.-.....|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 44566789999999999999886554 4567899999999999999987654211000 000011111111111
Q ss_pred HhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeE-EEEec
Q 005834 234 DLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCT-IILTS 302 (675)
Q Consensus 234 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~-ilvTt 302 (675)
....+. +. .....+....+.+... .++.-++|+|++.... .++.+...+.. -..... |+.||
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-------pp~~~ifIlatt 157 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-------PPAHVIFILATT 157 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-------CCCCeEEEEEeC
Confidence 100000 00 0011122222322221 2356688999986542 23333222221 222334 44555
Q ss_pred cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 303 RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 303 R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
....+..........+...+++.++....+...+.... ..--.+....|++.++|.+..+.
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEG-IEYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 55444333344456889999999999888888764221 11124567888999999875443
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.86 E-value=0.0001 Score=73.72 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+.++|++|+||||+|+.+++...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999988754
No 131
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=9.3e-06 Score=91.16 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC--ccccccccCCCEEEecccc
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL--PSSLGRLINLQTLCLEYCR 602 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--p~~i~~L~~L~~L~l~~~~ 602 (675)
.+|+|++|++++.+.... ..++.+++|++|.+.+-.+..- -..+.+|++|++||+|..+
T Consensus 171 sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 345555555543332221 1144555555555555444421 1234455555555555443
No 132
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.84 E-value=4.2e-06 Score=83.64 Aligned_cols=138 Identities=21% Similarity=0.288 Sum_probs=106.6
Q ss_pred CCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEecc-ccCCC-cc
Q 005834 531 GIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEY-CRLKD-IV 607 (675)
Q Consensus 531 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~-~~l~~-~~ 607 (675)
+++.+|... -+.-..+.+..|. ...+|+..|+.+++||.|||++|.|+.+ |+.+..|..|..|-+.+ |+|++ |+
T Consensus 57 GL~eVP~~L-P~~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccC-CCcceEEEeccCC--cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 444555422 1244566665554 4457788899999999999999999976 88899999888887777 78998 43
Q ss_pred -cccCCCCCcEEEeeCCCCCccc-hhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 608 -IVGQLKKLEILSFRGSDIERLP-LEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 608 -~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.+++|..|+-|.+.-|.+.-++ ..+..|++|..|.+..|. +..++.+.+. .+.+++++++...+
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~-~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQ-GLAAIKTLHLAQNP 199 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhcccccc-chhccchHhhhcCc
Confidence 7889999999999888887554 468999999999999876 8888887666 78899988876554
No 133
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.83 E-value=0.00015 Score=76.67 Aligned_cols=138 Identities=22% Similarity=0.265 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccC
Q 005834 163 SRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELN 242 (675)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (675)
.|.....++.+.+..... ++.|.|+-++||||+++.+....... .+++..-+......-+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~------------- 81 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELL------------- 81 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHH-------------
Confidence 344556666666654333 99999999999999997766665432 55554433211111001
Q ss_pred cCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHH-----hhhcCCcce
Q 005834 243 ESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL-----RNVMNSQKE 317 (675)
Q Consensus 243 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va-----~~~~~~~~~ 317 (675)
+....+.+.-.. ++..++||.|.....|......+.+ .++. +|++|+-+.... ....+....
T Consensus 82 ----d~~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d-------~~~~-~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 82 ----DLLRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYD-------RGNL-DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred ----HHHHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHc-------cccc-eEEEECCchhhhccchhhhcCCCcee
Confidence 111111111111 5689999999999999886555544 4444 888888776543 223456679
Q ss_pred EecCCCCHHHHHHHH
Q 005834 318 IQIDALSKEEALHLF 332 (675)
Q Consensus 318 ~~l~~L~~~e~~~Lf 332 (675)
+.+.||+..|...+-
T Consensus 149 ~~l~PlSF~Efl~~~ 163 (398)
T COG1373 149 LELYPLSFREFLKLK 163 (398)
T ss_pred EEECCCCHHHHHhhc
Confidence 999999999887653
No 134
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.82 E-value=0.00031 Score=75.74 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=90.3
Q ss_pred CccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccC---CCCeEEEEEeCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK---LFDKVAMAEVTE 220 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~ 220 (675)
.+..+.|.+..++++.+.+. . ...+-+.++|++|.|||++|+.+++...... .+....++.+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34566788988888877653 0 2345689999999999999999999875321 112344554433
Q ss_pred CCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc------cc-CCCCcccccccc--
Q 005834 221 NPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE------VG-IPSGDVKKERMD-- 291 (675)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~------~~-~~~~~~~~~~~~-- 291 (675)
. +++... .+. . ............+....+++++|+||+++....-.. .. ..+..++ ..++
T Consensus 260 ~----eLl~ky---vGe-t--e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL-~~LDgl 328 (512)
T TIGR03689 260 P----ELLNKY---VGE-T--ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL-SELDGV 328 (512)
T ss_pred h----hhcccc---cch-H--HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH-HHhccc
Confidence 1 111100 000 0 000011112222222234789999999965311000 00 0000000 0111
Q ss_pred -CCCCeEEEEeccchhHHhhh-c---CCcceEecCCCCHHHHHHHHHHHhCC
Q 005834 292 -DQRRCTIILTSRRQDLLRNV-M---NSQKEIQIDALSKEEALHLFQKIVGD 338 (675)
Q Consensus 292 -~~~~s~ilvTtR~~~va~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (675)
...+..||.||......... . .-...++++..+.++..++|..+...
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 22345566666544332212 2 12346899999999999999998753
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.81 E-value=0.00048 Score=74.74 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=106.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
..-+.|+|..|+|||+|++.+++....+..-..+++++.. ++..++...+... ....+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh--
Confidence 3568999999999999999999998754222345666542 3344444444211 1223444444
Q ss_pred CeEEEEecCcccccc---c-ccccCCCCccccccccCCCCeEEEEeccchh--HH------hhhcCCcceEecCCCCHHH
Q 005834 260 ERHLIILDNIWGELK---F-DEVGIPSGDVKKERMDDQRRCTIILTSRRQD--LL------RNVMNSQKEIQIDALSKEE 327 (675)
Q Consensus 260 k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~--va------~~~~~~~~~~~l~~L~~~e 327 (675)
+.-+||+||+..... + +.+...+. .+ ...|..|++||.... +. ...+.....+++++.+.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n----~l--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFN----AL--HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHH----HH--HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 345899999964321 1 11111111 11 123445777776431 11 1123344689999999999
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHH------hcC--ChHHHHHHHHHH
Q 005834 328 ALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKAL------KNM--SLETWKYVLRQL 385 (675)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~l~~l 385 (675)
-..++.+.+... ...--+++..-|++.+.|..-.+.-+-..+ .++ +....+.+++.+
T Consensus 285 r~~il~~~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 285 RIAILKKKAEEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999999987632 112235678899999998765433222222 122 667777777765
No 136
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.81 E-value=0.0004 Score=70.14 Aligned_cols=132 Identities=12% Similarity=0.158 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCe
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEER 261 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 261 (675)
-+.++|.+|+|||++|+.+++...........-|+.++. .++ ...+... .. .....+.+.. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~-----~~-~~~~~~~~~a---~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGH-----TA-PKTKEILKRA---MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhccc-----ch-HHHHHHHHHc---cC
Confidence 588999999999999998888765432222222444432 122 2211111 11 1122222222 34
Q ss_pred EEEEecCccccc------cc-----ccccCCCCccccccccCCCCeEEEEeccchhHHhhh-------cCCcceEecCCC
Q 005834 262 HLIILDNIWGEL------KF-----DEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNV-------MNSQKEIQIDAL 323 (675)
Q Consensus 262 ~LlVlDdv~~~~------~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~-------~~~~~~~~l~~L 323 (675)
-+|++|++.... .| +.+...+.+ ...+.+||+++......... ......++++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~-------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l 195 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN-------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDY 195 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCc
Confidence 688999996320 11 111111111 33456677776543221100 011357999999
Q ss_pred CHHHHHHHHHHHhC
Q 005834 324 SKEEALHLFQKIVG 337 (675)
Q Consensus 324 ~~~e~~~Lf~~~~~ 337 (675)
+.+|-..++...+.
T Consensus 196 ~~edl~~I~~~~l~ 209 (284)
T TIGR02880 196 SEAELLVIAGLMLK 209 (284)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888764
No 137
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.81 E-value=1.7e-06 Score=86.42 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=97.6
Q ss_pred cCCCeEEecCCCCCccCCCCc--CCCccceeEeccccCcccccchhhhcCCCCccEEEecC-CCCCCCccc-cccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPERL--QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTG-IHFSSLPSS-LGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~-i~~L~~L~ 594 (675)
+....-|.+..|.|+.+|... .+++||.|+++.|.... +-++.|++++.|..|-+-+ |+|+.+|+. ++.|..|+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~--I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF--IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhh--cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 566777888888888887654 78889999986665433 3355688888877665544 888888765 78888888
Q ss_pred EEEeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcc
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 647 (675)
-|.+.-|++.- ...+..|++|..|.+..|.++.++. .+..+..++++++..|.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 88888888766 4577888888888888888888887 68888888888887766
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00096 Score=68.20 Aligned_cols=199 Identities=13% Similarity=0.157 Sum_probs=113.5
Q ss_pred ccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC-------------CCCeEEEEEeCCCCC
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDK-------------LFDKVAMAEVTENPD 223 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~ 223 (675)
+..++|.+...+.+...+..+.. +...++|..|+||+++|..+++..-... .+....|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 34678999999999999887664 7899999999999999999888753221 112234443210000
Q ss_pred HHHHHHHHHHHhCCCcc-cCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCe
Q 005834 224 HQKIQDKLASDLGIKFE-LNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRC 296 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s 296 (675)
-..+-.+-+...+.... ...-..+..+.+.+.+. .+++-++|+|++.... ..+.+...+.. -.+..
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE-------Pp~~~ 155 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-------PGNGT 155 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-------CCCCe
Confidence 00000111111111000 01111233444555443 2456789999986543 23333222221 11334
Q ss_pred EEEEeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 297 TIILTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 297 ~ilvTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
-|++|+..+.+.....+....+.+.++++++..+.+.+..... ........++..++|.|..+....
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~----~~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE----ILNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc----cchhHHHHHHHHcCCCHHHHHHHH
Confidence 4555555555555455667899999999999999998875321 111124688999999997665433
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=0.00013 Score=76.47 Aligned_cols=107 Identities=20% Similarity=0.258 Sum_probs=72.1
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCc
Q 005834 160 AFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKF 239 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (675)
..++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+++..+.- .+...
T Consensus 176 d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP-~~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP-NGVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC-CCCCe
Confidence 456788888999988864 357788999999999999999998876667889999999998887776542210 00110
Q ss_pred ccCcCHHHHHHHHH-HHHhc-cCeEEEEecCcccc
Q 005834 240 ELNESIFDRANRLC-RVLKN-EERHLIILDNIWGE 272 (675)
Q Consensus 240 ~~~~~~~~~~~~l~-~~l~~-~k~~LlVlDdv~~~ 272 (675)
. -......++. ....+ .+++++|+|++...
T Consensus 253 ~---~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 R---RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred E---ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 0011111122 22211 36799999998654
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.77 E-value=0.00064 Score=68.64 Aligned_cols=133 Identities=12% Similarity=0.197 Sum_probs=70.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
..+.++|.+|+||||+|+.+++.....+.-...-|+.++. .++.... .+. .. .....+.+.. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~------~~-~~~~~~l~~a---~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH------TA-PKTKEVLKKA---M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc------ch-HHHHHHHHHc---c
Confidence 3578999999999999999988764322211112444442 2222211 111 01 1112222221 2
Q ss_pred eEEEEecCccccc------cc-----ccccCCCCccccccccCCCCeEEEEeccchhHHh-------hhcCCcceEecCC
Q 005834 261 RHLIILDNIWGEL------KF-----DEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLR-------NVMNSQKEIQIDA 322 (675)
Q Consensus 261 ~~LlVlDdv~~~~------~~-----~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~-------~~~~~~~~~~l~~ 322 (675)
.-+|++|++.... .+ +.+.....+ ...+.+||+++....... -.......+..++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~-------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~ 195 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN-------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPD 195 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhc-------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCC
Confidence 3599999996421 11 111111111 334567777775433211 0112245789999
Q ss_pred CCHHHHHHHHHHHhC
Q 005834 323 LSKEEALHLFQKIVG 337 (675)
Q Consensus 323 L~~~e~~~Lf~~~~~ 337 (675)
++.+|..+++...+.
T Consensus 196 ~t~~el~~I~~~~l~ 210 (287)
T CHL00181 196 YTPEELLQIAKIMLE 210 (287)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999888764
No 141
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.75 E-value=0.00063 Score=72.31 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=98.1
Q ss_pred CccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+.++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+..+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f---i~V~~se--- 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F---LRVVGSE--- 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E---EEEecch---
Confidence 34566788888888777653 1 234578899999999999999999976532 3 1121111
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc--c-------ccCCCCcccccc--ccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD--E-------VGIPSGDVKKER--MDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~--~-------~~~~~~~~~~~~--~~~ 292 (675)
+... ..+ ........+.+....+.+.+|+||+++....-. . +...+..++..+ +..
T Consensus 253 ---L~~k---~~G-------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 ---LIQK---YLG-------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---hhhh---hcc-------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1110 000 111223333333334568899999985431000 0 000000000000 012
Q ss_pred CCCeEEEEeccchhHHhhhc----CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 293 QRRCTIILTSRRQDLLRNVM----NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
..+.+||.||.......... .-...+.++..+.++..++|..++......++. ....++..+.|.-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 34667888887654432222 123588999999999999999876533221111 1345666666654
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.74 E-value=0.0004 Score=73.22 Aligned_cols=182 Identities=20% Similarity=0.259 Sum_probs=97.7
Q ss_pred cCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
..+.++.|-+..++++.+.+. . ...+-+.++|++|.|||++|+.+++..... | +.+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~---- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG---- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh----
Confidence 345567788888777766543 1 245678999999999999999999876532 2 22211
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--------cc-cccCCCCcccccc--cc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--------FD-EVGIPSGDVKKER--MD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~-~~~~~~~~~~~~~--~~ 291 (675)
..+... ..+ ........+........+.+|++|+++.... .+ .....+..++... +.
T Consensus 213 --s~l~~k---~~g-------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 213 --SEFVQK---YLG-------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred --HHHHHH---hcc-------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 111111 111 1112233344444445789999999864310 00 0000000011000 11
Q ss_pred CCCCeEEEEeccchhHHhh-hc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 292 DQRRCTIILTSRRQDLLRN-VM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
...+..||.||........ .. .-...+.++..+.++...+|..+.......++. ...++++.+.|..
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 2346678888875543321 22 123578898889998888888776532222211 1346666666653
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00061 Score=75.74 Aligned_cols=185 Identities=14% Similarity=0.187 Sum_probs=108.7
Q ss_pred ccCccccccHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDK--------------------LFDKV 213 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 213 (675)
|..+..++|.+..+..|.+++..++.. .+.++|..|+||||+|+.+++..--.. +++ +
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-V 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 445667889999999999998876654 568999999999999999988754211 111 1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCcccc
Q 005834 214 AMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKK 287 (675)
Q Consensus 214 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~ 287 (675)
+.+.......+. ....+.+.+. .+++-++|+|++.... ..+.+...+..
T Consensus 91 ~eid~~s~~~v~----------------------~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--- 145 (576)
T PRK14965 91 FEIDGASNTGVD----------------------DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--- 145 (576)
T ss_pred eeeeccCccCHH----------------------HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc---
Confidence 111111111111 1222222221 1345588999986543 22222222211
Q ss_pred ccccCCCCeEEE-EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh-hHHHH
Q 005834 288 ERMDDQRRCTII-LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP-VALIT 365 (675)
Q Consensus 288 ~~~~~~~~s~il-vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~ 365 (675)
-...+.+| +||....+..........++..+++.++....+...+.... ..--.+....|++.++|.. .|+..
T Consensus 146 ----pp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~la~~a~G~lr~al~~ 220 (576)
T PRK14965 146 ----PPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-ISISDAALALVARKGDGSMRDSLST 220 (576)
T ss_pred ----CCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22344444 55555555543444566889999999998888877664221 1122456788999999966 45554
Q ss_pred HHHHH
Q 005834 366 LAKAL 370 (675)
Q Consensus 366 ~~~~L 370 (675)
+-..+
T Consensus 221 Ldqli 225 (576)
T PRK14965 221 LDQVL 225 (576)
T ss_pred HHHHH
Confidence 44433
No 144
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=1e-06 Score=94.30 Aligned_cols=105 Identities=26% Similarity=0.311 Sum_probs=74.8
Q ss_pred hcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCccccc--CCCCCcEEEeeCCCCCccchhhcCCCCCCEe
Q 005834 564 FDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVG--QLKKLEILSFRGSDIERLPLEFGQLTRLQLL 641 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i~--~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 641 (675)
+.-++.|+.|+|+.|+++++- .+..|++|++|+|++|.+...+.++ .+. |+.|.+++|.+++|- +|.+|++|++|
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhhhcc
Confidence 445577888888888887764 6778888888888888877744333 233 888888888888775 68889999999
Q ss_pred cCcCcccCcccch-hhhhccCCccCEEeCcCCC
Q 005834 642 DLSNCRRLEVITP-NVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 642 ~l~~~~~l~~lp~-~~~~~~L~~L~~L~l~~c~ 673 (675)
|++.|- +..... ..+. .|..|..|+|.|+|
T Consensus 260 DlsyNl-l~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYNL-LSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHhh-hhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 998875 332211 1122 37788888888876
No 145
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.72 E-value=0.00093 Score=71.55 Aligned_cols=161 Identities=19% Similarity=0.177 Sum_probs=95.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
...+.|+|..|+|||+|++.+++....+..=..+++++. .++..++...+... . ...+.+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHHh-
Confidence 356889999999999999999998764421134566643 34444555444321 1 2233444442
Q ss_pred CeEEEEecCcccccc---cc-cccCCCCccccccccCCCCeEEEEeccchhHH--------hhhcCCcceEecCCCCHHH
Q 005834 260 ERHLIILDNIWGELK---FD-EVGIPSGDVKKERMDDQRRCTIILTSRRQDLL--------RNVMNSQKEIQIDALSKEE 327 (675)
Q Consensus 260 k~~LlVlDdv~~~~~---~~-~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va--------~~~~~~~~~~~l~~L~~~e 327 (675)
.-+||+||+..... ++ .+...+ ..+ ...+..+|+|+....-. ...+.....+.+++.+.++
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~----n~~--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTF----NAL--HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHH----HHH--HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 34899999965421 11 111111 111 12345678877642111 1112334578999999999
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 328 ALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
-..++.+.+.... ..--+++..-|++.+.|.+-.+.
T Consensus 273 r~~il~~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 273 RLAILQKKAEEEG-LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 9999999886432 22235678888888888765433
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.0015 Score=71.63 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
..+.|+|..|+|||.|++.+++.......-..+++++. .++..++...+... ....+.+.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~~-- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYRE-- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhhc--
Confidence 45899999999999999999998764311234566643 44444444433211 12233344432
Q ss_pred eEEEEecCccccc---cccc-ccCCCCccccccccCCCCeEEEEeccchh--H------HhhhcCCcceEecCCCCHHHH
Q 005834 261 RHLIILDNIWGEL---KFDE-VGIPSGDVKKERMDDQRRCTIILTSRRQD--L------LRNVMNSQKEIQIDALSKEEA 328 (675)
Q Consensus 261 ~~LlVlDdv~~~~---~~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~--v------a~~~~~~~~~~~l~~L~~~e~ 328 (675)
.=+|||||+.... .|+. +. .+++.+ ...+..|||||.... . ...-+...-.+.|.+.+.+.-
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF----~l~N~l--~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFF----HTFNTL--HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHH----HHHHHH--HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 3589999996542 2222 11 122222 233556888887531 1 112245567899999999999
Q ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHH------hcC--ChHHHHHHHHHH
Q 005834 329 LHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKAL------KNM--SLETWKYVLRQL 385 (675)
Q Consensus 329 ~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~l~~l 385 (675)
..++.+.+.... ..--+++++-|++.+.+..-.+.-+-..| .++ +...-+.+++.+
T Consensus 452 ~aIL~kka~~r~-l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 452 IAILRKKAVQEQ-LNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHHHHHHhcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999998876332 12225677788888776643333222222 122 555555666554
No 147
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=1.3e-05 Score=86.02 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=64.9
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCcccccCCCCCcEEE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILS 619 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~ 619 (675)
.+++|..|.+..+...... ..+..+.+|++|++++|.|+++. .+..|+.|+.|++++|.|+.+..+..+.+|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~---~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIE---NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhcc---cchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhccc
Confidence 4566666666544322221 11445667777777777776654 3666666777777777777666666677777777
Q ss_pred eeCCCCCccchh-hcCCCCCCEecCcCcc
Q 005834 620 FRGSDIERLPLE-FGQLTRLQLLDLSNCR 647 (675)
Q Consensus 620 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 647 (675)
+++|.+..++.. ...+.+|+.+++.+|.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 777766666543 4566667777776665
No 148
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.0015 Score=63.34 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=103.8
Q ss_pred ccCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
|.....|+|.++..+++.=++. +..+-.+.++|++|.||||||.-+++...+. + -++-+......
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~---- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKP---- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccCh----
Confidence 4456689999988888766654 4556789999999999999999999998865 1 11111111111
Q ss_pred HHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc------------c--cccccCCCCccccccccCCCC
Q 005834 230 KLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL------------K--FDEVGIPSGDVKKERMDDQRR 295 (675)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~------------~--~~~~~~~~~~~~~~~~~~~~~ 295 (675)
.+ ...+...|. ..=.+++|.+.... + .+-+...-+......++-.+=
T Consensus 92 ----------------gD-laaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 92 ----------------GD-LAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred ----------------hh-HHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 11 112222232 22345556553321 0 111100001000001111222
Q ss_pred eEEEEeccchhHHhhh-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 296 CTIILTSRRQDLLRNV-MNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 296 s~ilvTtR~~~va~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
+-|=-|||.-.+.... ..-.-+.+++.-+.+|-.+...+.+..- .-+--++.+.+|+++..|-|--+.-+-+..+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-GIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-CCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3345688875543111 1223477888889999999998887521 1122245789999999999965554444443
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.0013 Score=70.70 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
..-+.|+|.+|+|||+|++.+++.......=..++|++. .++..++...+... . ...+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~----~~~f~~~~~~- 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----K----LNEFREKYRK- 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----c----HHHHHHHHHh-
Confidence 446899999999999999999998764321124667754 45566666555321 1 1223333332
Q ss_pred CeEEEEecCcccccc---c-ccccCCCCccccccccCCCCeEEEEeccch-hHH----h---hhcCCcceEecCCCCHHH
Q 005834 260 ERHLIILDNIWGELK---F-DEVGIPSGDVKKERMDDQRRCTIILTSRRQ-DLL----R---NVMNSQKEIQIDALSKEE 327 (675)
Q Consensus 260 k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~va----~---~~~~~~~~~~l~~L~~~e 327 (675)
+.-+|++||+..... + +.+...+. .+ ...|..||+||... .-. . ..+...-.+.+++.+.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n----~l--~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFN----EL--HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHH----HH--HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 356899999964311 1 11211111 11 12345688887532 111 1 112345588999999999
Q ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHH------hc--CChHHHHHHHHHH
Q 005834 328 ALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKAL------KN--MSLETWKYVLRQL 385 (675)
Q Consensus 328 ~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L------~~--~~~~~w~~~l~~l 385 (675)
-..++++.+.... ..--+++..-|++.+.|.--.+.-+-..| .+ .+...-..++..+
T Consensus 268 r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 268 RKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999998875321 12225678888888887643333222222 12 2666667776654
No 150
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=1.3e-06 Score=93.39 Aligned_cols=129 Identities=21% Similarity=0.141 Sum_probs=90.3
Q ss_pred cCCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 597 (675)
+.++..+++++|.+..+.... -++.|++|+++.|..... +++..++.|+.|||+.|.+..+|.--..=.+|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhccccccchhhhhheeee
Confidence 566667777777776555544 357788888876653222 246778888888888888887775322223488888
Q ss_pred eccccCCCcccccCCCCCcEEEeeCCCCC---ccchhhcCCCCCCEecCcCcccCcccc
Q 005834 598 LEYCRLKDIVIVGQLKKLEILSFRGSDIE---RLPLEFGQLTRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 598 l~~~~l~~~~~i~~l~~L~~L~l~~~~i~---~lp~~i~~L~~L~~L~l~~~~~l~~lp 653 (675)
+++|.++.+..+.+|.+|+.||++.|-+. +|- -++.|..|+.|+|.+|+ +-.-|
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCc-cccCH
Confidence 88888888888888888888888888554 332 26677788888888887 43333
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.67 E-value=0.0011 Score=77.39 Aligned_cols=166 Identities=13% Similarity=0.254 Sum_probs=92.8
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC----CeEEE-EEeCCCCCHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF----DKVAM-AEVTENPDHQKIQDKL 231 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~~~~~i 231 (675)
...+++||++++.+++..|......-+.++|.+|+|||++|+.++......... ...+| +.+ ..+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh---
Confidence 345689999999999999976666677799999999999999999886532111 22233 221 1111
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHHh-ccCeEEEEecCccccccccccc--CCCCccccccccCCCCeEEEEeccchhHH
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVLK-NEERHLIILDNIWGELKFDEVG--IPSGDVKKERMDDQRRCTIILTSRRQDLL 308 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~~~~~~--~~~~~~~~~~~~~~~~s~ilvTtR~~~va 308 (675)
. +... ....+.....+.+.+. .+++.+|++|++.....-..-. .-..++++..+ ....-++|-+|.....-
T Consensus 242 -a--~~~~--~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 -A--GAKY--RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARGELHCIGATTLDEYR 315 (852)
T ss_pred -h--cchh--hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcCceEEEEeCcHHHHH
Confidence 0 1011 1122334445555543 2358999999996442100000 00001111111 22234555555544321
Q ss_pred ------hhhcCCcceEecCCCCHHHHHHHHHHHhC
Q 005834 309 ------RNVMNSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 309 ------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
.........+.++..+.++...++.....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 11223445788999999999999876643
No 152
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=6.9e-05 Score=77.62 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=48.3
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCC-CCCCCccccccccCCCEEEeccc-cCCC-cccccCCCCCc
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGI-HFSSLPSSLGRLINLQTLCLEYC-RLKD-IVIVGQLKKLE 616 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~l~~~-~l~~-~~~i~~l~~L~ 616 (675)
.|++++.|.+..+... .+| . -..+|+.|.+++| .++.+|..+. .+|++|.+++| .+.. | .+|+
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP-~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLP-V---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccC-C---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 4677888888655322 222 1 1235888888774 4556676552 57888888887 4544 3 2466
Q ss_pred EEEeeCCC---CCccchhhcC
Q 005834 617 ILSFRGSD---IERLPLEFGQ 634 (675)
Q Consensus 617 ~L~l~~~~---i~~lp~~i~~ 634 (675)
+|++.++. +..||.++..
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~ 136 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTS 136 (426)
T ss_pred eEEeCCCCCcccccCcchHhh
Confidence 66676543 4566765443
No 153
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.0023 Score=68.71 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=90.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
..-+.|+|..|+|||+|++.+++..... ...+++++ ..++...+...+... ....+.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~---------~~~~f~~~~~-- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG---------EMQRFRQFYR-- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc---------hHHHHHHHcc--
Confidence 3568899999999999999999987643 23345554 234444555544321 1122333333
Q ss_pred CeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchh--H---H---hhhcCCcceEecCCCCHHHHHHH
Q 005834 260 ERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD--L---L---RNVMNSQKEIQIDALSKEEALHL 331 (675)
Q Consensus 260 k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~--v---a---~~~~~~~~~~~l~~L~~~e~~~L 331 (675)
+.-+|++||+............+-.+++.+. ..|..||+||.... . . ...+..+..+.+.+++.++-..+
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3458899998654321110000001111111 23456888875421 1 1 11233457899999999999999
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 332 FQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 332 f~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
+.+.+.... ..--+++..-|+..+.|.-
T Consensus 280 L~~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 988875321 1222456666777777553
No 154
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.61 E-value=6.3e-06 Score=70.32 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=34.4
Q ss_pred cchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCCCccchh
Q 005834 559 ISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLE 631 (675)
Q Consensus 559 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~ 631 (675)
+|..+-..++.++.|++++|.+..+|..+..++.|+.|+++.|.+.. |..+..|.+|-+|+..+|.+.++|-+
T Consensus 68 fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 33333344444445555555555555444455555555555554433 44444444455554444444444443
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0021 Score=66.02 Aligned_cols=153 Identities=15% Similarity=0.182 Sum_probs=88.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC-------------------CCeEEEEEeC---CCCCHHHHHHHHHHHhCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKL-------------------FDKVAMAEVT---ENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs---~~~~~~~~~~~i~~~l~~ 237 (675)
.+.+.++|+.|+||||+|+.+++..--... .....|+.-. +...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~i------------- 88 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKV------------- 88 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCH-------------
Confidence 456889999999999999999887642211 1112233211 11111
Q ss_pred CcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccch-hHHhh
Q 005834 238 KFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ-DLLRN 310 (675)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~va~~ 310 (675)
+.+..+.+.+. .+++-++|+|+++... ..+.+...+.. -..++.+|+||.+. .+...
T Consensus 89 ---------d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-------Pp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 89 ---------DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE-------PSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred ---------HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC-------CCCCeEEEEEECChhhCcHH
Confidence 22223333322 1334456779997653 23333222222 22355566665554 44444
Q ss_pred hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 311 VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
..+....+.+.+++.+++.+.+...... ...+.+..++..++|.|+.+..+
T Consensus 153 I~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 153 IKSRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 4555678999999999999888776421 11334667889999999765544
No 156
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.59 E-value=8.8e-05 Score=65.62 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=41.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC-e
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE-R 261 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-~ 261 (675)
|.|+|++|+||||+|+.+++.... ..+.++.+...+. ...........+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc----------------cccccccccccccccccccccc
Confidence 579999999999999999999752 2344443321100 01122233333333333333 7
Q ss_pred EEEEecCcccc
Q 005834 262 HLIILDNIWGE 272 (675)
Q Consensus 262 ~LlVlDdv~~~ 272 (675)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999654
No 157
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.59 E-value=0.0019 Score=71.00 Aligned_cols=182 Identities=15% Similarity=0.201 Sum_probs=94.6
Q ss_pred cCccccccHHHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEA---LKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
....++.|-++..+++.+. +.. ...+-+.++|++|+|||++|+.+++..... | +.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~-----~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--e-----eeccH---
Confidence 3455677877665555443 321 223458899999999999999999876432 2 22221
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc--c-------cCCCCcccccc--ccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE--V-------GIPSGDVKKER--MDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~-------~~~~~~~~~~~--~~~ 292 (675)
.++.... .+. .......+.+......+.+|++|+++....-.. . ...+..++... +..
T Consensus 122 -~~~~~~~---~g~-------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 -SDFVEMF---VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -HHHHHHH---hcc-------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1111110 010 112233333333334679999999955311000 0 00000000000 112
Q ss_pred CCCeEEEEeccchhHHhh-hc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 293 QRRCTIILTSRRQDLLRN-VM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
..+..||.||........ .. .-...+.++..+.++-.++|..+.......++ .....+++.+.|..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 344556666655432111 11 23457889989998889999887753322211 22457888888743
No 158
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2.7e-05 Score=79.13 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=90.7
Q ss_pred cCCCeEEecCCCCCcc---CCCCcCCCccceeEecccc-CcccccchhhhcCCCCccEEEecCCCCCCCc--cccccccC
Q 005834 519 QEGPIAISLPYRGIQV---LPERLQCPRLELLLLLEKG-GGSMPISDHFFDGTEGLRVLNFTGIHFSSLP--SSLGRLIN 592 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~L~~ 592 (675)
...+..|.+..|+++. ..-...+|+|..|.++.|. ......+ ..-+..|+.|||++|++..++ ..++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccccccccccccc
Confidence 4567788888887752 1112368899999998774 2222222 445678899999999887665 45788999
Q ss_pred CCEEEeccccCCC---ccc-----ccCCCCCcEEEeeCCCCCccch--hhcCCCCCCEecCcCcc
Q 005834 593 LQTLCLEYCRLKD---IVI-----VGQLKKLEILSFRGSDIERLPL--EFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 593 L~~L~l~~~~l~~---~~~-----i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~ 647 (675)
|+.|+++.|.+.. |+. ...+++|++|++..|++.+.|. .+..+.+|++|.+..|+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 9999999998766 332 3578899999999998877764 46667788888876655
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.0015 Score=76.14 Aligned_cols=159 Identities=13% Similarity=0.229 Sum_probs=91.2
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CC-eEEEEEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL----FD-KVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~-~~~wv~vs~~~~~~~~~~~ 230 (675)
....+++||+.++..+++.|......-+.++|.+|+|||++|+.+......... .. .++++.++.- .
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~-- 246 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V-- 246 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h--
Confidence 345578999999999999998666667779999999999999999998753211 12 2333332221 0
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHh-ccCeEEEEecCcccccc---------cccccCCCCccccccccCCCCeEEEE
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLK-NEERHLIILDNIWGELK---------FDEVGIPSGDVKKERMDDQRRCTIIL 300 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~ilv 300 (675)
. +... ....++....+.+.+. .+++.+|++|++..... -..+..|. + ....-++|-
T Consensus 247 --a--g~~~--~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~-------l-~~g~l~~Ig 312 (857)
T PRK10865 247 --A--GAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA-------L-ARGELHCVG 312 (857)
T ss_pred --h--ccch--hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch-------h-hcCCCeEEE
Confidence 0 0000 1122333444444432 24679999999865421 01111111 1 223445565
Q ss_pred eccchhHH------hhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 301 TSRRQDLL------RNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 301 TtR~~~va------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
+|...+.. .........+.+...+.++...+++...
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55544321 1112233467777778999999887654
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00018 Score=81.76 Aligned_cols=165 Identities=18% Similarity=0.293 Sum_probs=93.9
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-C---CCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK-L---FDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
..+++||+++++++++.|......-+.++|.+|+|||++|+.+++...... . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 446789999999999988765555667899999999999999998753221 1 24455521 11111 10
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccc-c--CCCCccccccccCCCCeEEEEeccchhHH--
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEV-G--IPSGDVKKERMDDQRRCTIILTSRRQDLL-- 308 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~ilvTtR~~~va-- 308 (675)
+... ....+.....+.+.+...++.+|++|++.....-..- . ....++++..+ ....-+||-+|...+..
T Consensus 256 --G~~~--~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 --GTKY--RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred --ccch--hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-hCCCeEEEecCChHHHHHH
Confidence 1111 1123344455555555446789999999643100000 0 00001111111 22334555555543321
Q ss_pred ----hhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 309 ----RNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 309 ----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
.........+.+++++.+++..++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1122344689999999999999998764
No 161
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.51 E-value=0.0039 Score=59.89 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=41.1
Q ss_pred ccCccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
+......+|-+...+.|++... .....-+.++|..|.|||++++.+.+....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3445567898888877776433 4455678899999999999999999988765
No 162
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.51 E-value=0.0013 Score=61.54 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=54.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQ 228 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 228 (675)
|....++||-++.++.+.-.-.+++.+-+.|.|++|+||||-+..+++..-....=+.+.=.+.|++..+.-+.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 44455788999988888777778899999999999999999999888877643233455555566555444333
No 163
>PRK06620 hypothetical protein; Validated
Probab=97.48 E-value=0.00063 Score=65.54 Aligned_cols=133 Identities=15% Similarity=0.069 Sum_probs=76.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
+.+.|+|++|+|||+|++.+++.... .++. ..+. . . +... .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~--------------------~-----~---~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF--------------------N-----E---EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh--------------------c-----h---hHHh--c
Confidence 56899999999999999988776531 1111 0000 0 0 0111 2
Q ss_pred eEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHH------hhhcCCcceEecCCCCHHHHHHHHHH
Q 005834 261 RHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL------RNVMNSQKEIQIDALSKEEALHLFQK 334 (675)
Q Consensus 261 ~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 334 (675)
.-++++||+... +.. .+..+++.+ ...|..+|+|++..... ...+...-.++++++++++-..++.+
T Consensus 86 ~d~lliDdi~~~---~~~--~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k 158 (214)
T PRK06620 86 YNAFIIEDIENW---QEP--ALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFK 158 (214)
T ss_pred CCEEEEeccccc---hHH--HHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHH
Confidence 357888999632 210 111111111 24566889988754321 11234455899999999998888887
Q ss_pred HhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 335 IVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 335 ~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
.+... .-.--+++.+-|++.+.|.-
T Consensus 159 ~~~~~-~l~l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 159 HFSIS-SVTISRQIIDFLLVNLPREY 183 (214)
T ss_pred HHHHc-CCCCCHHHHHHHHHHccCCH
Confidence 76522 11122456677777776644
No 164
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.0005 Score=71.37 Aligned_cols=113 Identities=21% Similarity=0.224 Sum_probs=64.3
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCC-CCCCCccccccccCCCEEEe
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGI-HFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~L~~L~~L~l 598 (675)
...++|.++.|.+..+|. -.++|++|.+..+. ....+|.. + ..+|+.|++++| .+..+|.+ |+.|.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~-nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LPNELTEITIENCN-NLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCC-CcccCCch-h--hhhhhheEccCcccccccccc------cceEEe
Confidence 456677777777777763 22357788774322 22222322 1 246777777777 56666653 444445
Q ss_pred cccc---CCC-cccccCC------------------CCCcEEEeeCCCCCccchhhcCCCCCCEecCcCc
Q 005834 599 EYCR---LKD-IVIVGQL------------------KKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNC 646 (675)
Q Consensus 599 ~~~~---l~~-~~~i~~l------------------~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 646 (675)
..+. +.. |+++..| .+|++|++++|....+|..+- .+|++|+++.|
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 4433 222 3333222 368888888887666665433 47888887664
No 165
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=7.1e-05 Score=69.12 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEE
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTED-KLFDKVAM 215 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 215 (675)
+.|.|+|++|+||||||+.+++..... .+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987654 45777776
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.45 E-value=0.0023 Score=71.52 Aligned_cols=180 Identities=16% Similarity=0.226 Sum_probs=94.6
Q ss_pred CccccccHHHHHHH---HHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQD---VLEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
...++.|.++..++ +++++... ..+-+.++|++|.|||++|+.+++..... |+.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccH----
Confidence 34456676655544 44444421 24568999999999999999999876422 233321
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc---------cccCCCCcccccc--ccCC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD---------EVGIPSGDVKKER--MDDQ 293 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~--~~~~ 293 (675)
.++.... .+. .......+.+......+++|++||++....-. .....+..++... +...
T Consensus 250 s~f~~~~---~g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 250 SEFVEMF---VGV-------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHHHHh---hhh-------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111100 010 11123333344444578999999995431000 0000000000000 1133
Q ss_pred CCeEEEEeccchhHHhh-hcC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 294 RRCTIILTSRRQDLLRN-VMN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 294 ~~s~ilvTtR~~~va~~-~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
.+..||.||........ ... -...+.+...+.++-.++++.++......+ ......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 45566767665433221 121 235788888899999999988876422111 23456788888873
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0044 Score=64.14 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=83.3
Q ss_pred ccc-HHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEEEEEe
Q 005834 161 FDS-RKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDK--------------------LFDKVAMAEV 218 (675)
Q Consensus 161 ~~g-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 218 (675)
++| .+..++.+.+.+..++. +...++|+.|+||||+|+.+.+..--.. |.|.. ++..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~ 85 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAP 85 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-Eecc
Confidence 445 66777788887776654 4568999999999999999988754221 22221 1111
Q ss_pred -CCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCcccccccc
Q 005834 219 -TENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 219 -s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~ 291 (675)
+....+ +....+.+.+. .+++-++|+|++.... ..+.+...+..
T Consensus 86 ~~~~i~i----------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE------- 136 (329)
T PRK08058 86 DGQSIKK----------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE------- 136 (329)
T ss_pred ccccCCH----------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-------
Confidence 111111 22222333222 1345678899986542 22222222222
Q ss_pred CCCCeEEEEeccc-hhHHhhhcCCcceEecCCCCHHHHHHHHHHH
Q 005834 292 DQRRCTIILTSRR-QDLLRNVMNSQKEIQIDALSKEEALHLFQKI 335 (675)
Q Consensus 292 ~~~~s~ilvTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 335 (675)
-..++.+|++|.+ ..+.....+....+++.+++.++..+.+.+.
T Consensus 137 Pp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 137 PSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2345555655544 3443434456679999999999988877653
No 168
>PHA00729 NTP-binding motif containing protein
Probab=97.43 E-value=0.001 Score=63.63 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.0
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 170 DVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 170 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+++.+...+...|.|.|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555556667899999999999999999998753
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.014 Score=56.09 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=110.4
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC-CCCCHHHHHHHHHHHhCCCcccCc-
Q 005834 166 KVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT-ENPDHQKIQDKLASDLGIKFELNE- 243 (675)
Q Consensus 166 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~- 243 (675)
+.+..+...+ .++.+++.++|.-|.|||.+++......... +... +.+. +..+...+...|+..+..+.....
T Consensus 38 e~l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 38 EALLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred HHHHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 3344444333 4566799999999999999999555444321 1222 4443 445778888888888877432111
Q ss_pred -CHHHHHHHHHHHHhccCe-EEEEecCccccc--cccc---ccCCCCccccccccCCCCeEEEEeccch-------hHHh
Q 005834 244 -SIFDRANRLCRVLKNEER-HLIILDNIWGEL--KFDE---VGIPSGDVKKERMDDQRRCTIILTSRRQ-------DLLR 309 (675)
Q Consensus 244 -~~~~~~~~l~~~l~~~k~-~LlVlDdv~~~~--~~~~---~~~~~~~~~~~~~~~~~~s~ilvTtR~~-------~va~ 309 (675)
......+.+....++++| ..+++|+..+.. ..+. +...-.+ ....-+|+..-..+ .+..
T Consensus 113 ~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~-------~~~~l~ivL~Gqp~L~~~lr~~~l~ 185 (269)
T COG3267 113 AVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEED-------SSKLLSIVLIGQPKLRPRLRLPVLR 185 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhccc-------ccCceeeeecCCcccchhhchHHHH
Confidence 223344455555666777 899999986542 1111 1111000 11112233322111 0001
Q ss_pred hhcCCcce-EecCCCCHHHHHHHHHHHhCCCCCCCC--chHHHHHHHHHhCCChhHHHHHHHH
Q 005834 310 NVMNSQKE-IQIDALSKEEALHLFQKIVGDSMKTSA--FQPIAHEIVGRCGELPVALITLAKA 369 (675)
Q Consensus 310 ~~~~~~~~-~~l~~L~~~e~~~Lf~~~~~~~~~~~~--l~~~~~~I~~~c~GlPLai~~~~~~ 369 (675)
........ |.+.|++.++...++..+......++. -.+....|.....|.|.+|..++..
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 11112233 999999999999998888763322222 2456778999999999999887654
No 170
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=1.3e-05 Score=77.33 Aligned_cols=150 Identities=19% Similarity=0.126 Sum_probs=100.1
Q ss_pred cCCCeEEecCCCCCccC--CCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-----Ccccccccc
Q 005834 519 QEGPIAISLPYRGIQVL--PERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-----LPSSLGRLI 591 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~L~ 591 (675)
..++..+|+.++.++.. ....+-.+|+.|+++..+.-......-++.+++.|..|+++.|.+.. +-..++ .
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e 286 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--E 286 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--h
Confidence 34566677776665431 12235678889998765544444445568889999999999887642 112222 3
Q ss_pred CCCEEEecccc--CCC--ccc-ccCCCCCcEEEeeCC-CCC-ccchhhcCCCCCCEecCcCcccCcccchhh--hhccCC
Q 005834 592 NLQTLCLEYCR--LKD--IVI-VGQLKKLEILSFRGS-DIE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNV--ICQSWL 662 (675)
Q Consensus 592 ~L~~L~l~~~~--l~~--~~~-i~~l~~L~~L~l~~~-~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~--~~~~L~ 662 (675)
+|..|+|++|. +.. ... ...+++|..|||+.| .++ ..-..|.+++.|+||.++.|..+ .|..+ +. ..+
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~-s~p 363 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELN-SKP 363 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeec-cCc
Confidence 68888999885 222 333 357899999999987 344 34446888999999999999833 33322 23 578
Q ss_pred ccCEEeCcCCC
Q 005834 663 HLEVFGMAASR 673 (675)
Q Consensus 663 ~L~~L~l~~c~ 673 (675)
+|.+|++.||=
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 99999998873
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0078 Score=61.39 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=96.5
Q ss_pred HHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCCCC----------------eEEEEEeCCCCCHHHHH
Q 005834 166 KVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKLFD----------------KVAMAEVTENPDHQKIQ 228 (675)
Q Consensus 166 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------------~~~wv~vs~~~~~~~~~ 228 (675)
...+.+...+..++.+ .+.++|+.|+||+++|..+++..--..... ...|+....+..
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~----- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT----- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc-----
Confidence 4456667777665554 588999999999999999887654221111 122221100000
Q ss_pred HHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEec
Q 005834 229 DKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTS 302 (675)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTt 302 (675)
+.+.. ..-..+.+..+.+.+. .+++-++|+|+++... .-+.+...+.. -..++.+|++|
T Consensus 86 -------~~k~~-~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~~~fiL~~ 150 (319)
T PRK08769 86 -------GDKLR-TEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-------PSPGRYLWLIS 150 (319)
T ss_pred -------ccccc-ccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-------CCCCCeEEEEE
Confidence 00000 0011223333443332 2456689999986653 11222111111 22345555555
Q ss_pred c-chhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 303 R-RQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 303 R-~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
. ...+.....+....+.+.+++.+++...+.... .+ .+.+..++..++|.|+.+..+.
T Consensus 151 ~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~--~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 151 AQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS--ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC--hHHHHHHHHHcCCCHHHHHHHh
Confidence 4 445544445556789999999999988886531 11 2236678999999998665443
No 172
>PRK08181 transposase; Validated
Probab=97.39 E-value=0.0095 Score=59.27 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHH
Q 005834 173 EALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRL 252 (675)
Q Consensus 173 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 252 (675)
+|+. ...-+.++|.+|+|||.||..+.+....+ ...+.|++ ..+++..+..... ... ...+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~-----~~~----~~~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR-----ELQ----LESA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh-----CCc----HHHH
Confidence 4554 33568999999999999999999877543 33455654 3455555543221 111 2223
Q ss_pred HHHHhccCeEEEEecCcccc
Q 005834 253 CRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 253 ~~~l~~~k~~LlVlDdv~~~ 272 (675)
.+.+. +.-|||+||+...
T Consensus 162 l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh--cCCEEEEeccccc
Confidence 34443 3469999999543
No 173
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.01 Score=59.49 Aligned_cols=191 Identities=19% Similarity=0.266 Sum_probs=108.3
Q ss_pred cCccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
..+.++-|-++.+++|.+... + +.++=|.++|++|.|||-||++|+++-... | +.|...
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----IrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEeccH-
Confidence 445567788988888888764 1 356778999999999999999999987643 3 433321
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--c-------ccccCCCCcccccc--cc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--F-------DEVGIPSGDVKKER--MD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~-------~~~~~~~~~~~~~~--~~ 291 (675)
++.+. .+|. ...++..+++.-+.+.+..|++|.++.... . .++...+-.++..+ ++
T Consensus 220 ---ElVqK---YiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 220 ---ELVQK---YIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ---HHHHH---Hhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 11111 1121 123455555555667899999998854310 0 00000000011111 23
Q ss_pred CCCCeEEEEeccchhHHhh-hcCC---cceEecCCCCHHHHHHHHHHHhCC--CCCCCCchHHHHHHHHHhCCCh----h
Q 005834 292 DQRRCTIILTSRRQDLLRN-VMNS---QKEIQIDALSKEEALHLFQKIVGD--SMKTSAFQPIAHEIVGRCGELP----V 361 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va~~-~~~~---~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~l~~~~~~I~~~c~GlP----L 361 (675)
.....|||..|-..++... ...+ ...++.+.-+.+.-.++|+=++.. ....-+ .+.+++.|.|.- -
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlk 362 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLK 362 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHH
Confidence 4567889988876555421 2222 246777644444455666666652 222333 446677777764 4
Q ss_pred HHHHHHHHHh
Q 005834 362 ALITLAKALK 371 (675)
Q Consensus 362 ai~~~~~~L~ 371 (675)
|+.+=|+++.
T Consensus 363 aictEAGm~A 372 (406)
T COG1222 363 AICTEAGMFA 372 (406)
T ss_pred HHHHHHhHHH
Confidence 4555566654
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.38 E-value=0.0056 Score=70.95 Aligned_cols=46 Identities=39% Similarity=0.416 Sum_probs=37.3
Q ss_pred ccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.++..+.|.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688888888887664 22345899999999999999999999875
No 175
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.37 E-value=2.2e-05 Score=67.08 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=80.8
Q ss_pred hcCCCCccEEEecCCCCCCCccccccc-cCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEe
Q 005834 564 FDGTEGLRVLNFTGIHFSSLPSSLGRL-INLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLL 641 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~lp~~i~~L-~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L 641 (675)
+.....|...+|++|.++++|+.+... +.+++|+++.|.+++ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 455678888999999999999887665 489999999999999 888999999999999999999999999999999999
Q ss_pred cCcCcccCcccchhhh
Q 005834 642 DLSNCRRLEVITPNVI 657 (675)
Q Consensus 642 ~l~~~~~l~~lp~~~~ 657 (675)
+..+|. ...+|...+
T Consensus 129 ds~~na-~~eid~dl~ 143 (177)
T KOG4579|consen 129 DSPENA-RAEIDVDLF 143 (177)
T ss_pred cCCCCc-cccCcHHHh
Confidence 999877 556776654
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.00071 Score=75.03 Aligned_cols=52 Identities=25% Similarity=0.337 Sum_probs=42.4
Q ss_pred cccCccccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 154 QVKDYEAFDSRKKVFQDVLEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 154 ~~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.....++|.++.++++..++.+ ...+++.|+|++|+||||+++.++....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455566788999999999988863 2345799999999999999999998764
No 177
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.0018 Score=66.45 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=67.8
Q ss_pred HHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCcccCcCH
Q 005834 169 QDVLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK-VAMAEVTENP-DHQKIQDKLASDLGIKFELNESI 245 (675)
Q Consensus 169 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~ 245 (675)
.++++.+.. +.-..+.|+|.+|+|||||++.+++....+ +-+. ++|+.+.+.. .+.++.+.+...+..........
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 447777663 344677999999999999999999987643 2343 5777777654 67888888888776543211111
Q ss_pred -----HHHHHHHHHHH-hccCeEEEEecCccc
Q 005834 246 -----FDRANRLCRVL-KNEERHLIILDNIWG 271 (675)
Q Consensus 246 -----~~~~~~l~~~l-~~~k~~LlVlDdv~~ 271 (675)
......+.+++ ..+++.+||+|++..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11222333333 347899999999843
No 178
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00035 Score=64.06 Aligned_cols=97 Identities=24% Similarity=0.229 Sum_probs=42.4
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc--cccccccCCCEEEecc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP--SSLGRLINLQTLCLEY 600 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~ 600 (675)
..+.+++|++..++....+++|.+|.+..|.. ..+.+.+-..+++|..|.|++|++..+- ..+..++.|++|.+-+
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 33444455554444444555555555533321 1122222333444555555555544321 1233444555555555
Q ss_pred ccCCC-----cccccCCCCCcEEEee
Q 005834 601 CRLKD-----IVIVGQLKKLEILSFR 621 (675)
Q Consensus 601 ~~l~~-----~~~i~~l~~L~~L~l~ 621 (675)
|.+.. .--+.++++|++||.+
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehh
Confidence 54433 1234455555555544
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.33 E-value=0.00078 Score=59.98 Aligned_cols=91 Identities=22% Similarity=0.133 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
...+.|+|.+|+||||+++.++....... ..++++..+........... ......... ..........+.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKA-SGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCC-CCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999877442 24556655543322211111 011111111 222233334444444433
Q ss_pred CeEEEEecCcccccc
Q 005834 260 ERHLIILDNIWGELK 274 (675)
Q Consensus 260 k~~LlVlDdv~~~~~ 274 (675)
+..++++|++.....
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 348999999977643
No 180
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00062 Score=68.01 Aligned_cols=105 Identities=20% Similarity=0.273 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
.-+.++|..|+|||.||..+++....+ -..+++++ ..+++..+......... .....+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~~~~~l~~-- 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK------EDENEIIRSLVN-- 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc------ccHHHHHHHhcC--
Confidence 458899999999999999999998754 34456665 34455555544432111 112234444543
Q ss_pred eEEEEecCccc--ccccccccCCCCccccccccCCCCeEEEEeccch
Q 005834 261 RHLIILDNIWG--ELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ 305 (675)
Q Consensus 261 ~~LlVlDdv~~--~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (675)
-=||||||+.. ..+|..- .+-.++..+ -..+..+|+||...
T Consensus 179 ~dlLviDDlg~e~~t~~~~~--~l~~iin~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 ADLLILDDLGAERDTEWARE--KVYNIIDSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred CCEEEEecccCCCCCHHHHH--HHHHHHHHH--HHCCCCEEEECCCC
Confidence 23899999943 2334321 010111111 13455688888653
No 181
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0052 Score=68.35 Aligned_cols=183 Identities=15% Similarity=0.175 Sum_probs=104.7
Q ss_pred ccccccHHH---HHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHH
Q 005834 158 YEAFDSRKK---VFQDVLEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQ 225 (675)
Q Consensus 158 ~~~~~gr~~---~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 225 (675)
+.++.|-++ ++.+++++|.++ -++=+.++|++|.|||-||++++-...+- |+++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 445566554 566677777642 25668899999999999999999988754 4555442
Q ss_pred HHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc---ccCCCCc---ccccc---cc---CC
Q 005834 226 KIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE---VGIPSGD---VKKER---MD---DQ 293 (675)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---~~~~~~~---~~~~~---~~---~~ 293 (675)
+..+.+... .....+.+...-+...++.+.+|+++...--.. ....-.. .++.+ ++ ..
T Consensus 379 ----EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 111111111 023455555555556789999998854421110 0000000 00000 11 22
Q ss_pred CCeEEEEeccchhHHhhh-cC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 294 RRCTIILTSRRQDLLRNV-MN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 294 ~~s~ilvTtR~~~va~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
.+.-++-+|...++.+.. +. -...+.+..-+.....++|.-++.......+..++.+ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 333344455555554222 21 2347778877888888999998875444444455666 88888888744
No 182
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.23 E-value=0.012 Score=67.82 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=88.3
Q ss_pred ccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
..+|.++.++.|++++. .....++.++|++|+||||+|+.++...... | +-+..+...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchhc
Confidence 46799999999998876 1345689999999999999999999876532 3 22333433333332211111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc-c-----ccccCCCCc-cccccc-------cCCCCeEEE
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK-F-----DEVGIPSGD-VKKERM-------DDQRRCTII 299 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-~-----~~~~~~~~~-~~~~~~-------~~~~~s~il 299 (675)
..+.. .......+.. ... .+-+++||.++.... . ..+...+.. .-..+. -.-.+.-+|
T Consensus 398 ~~g~~------~G~~~~~l~~-~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 398 YIGSM------PGKLIQKMAK-VGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred cCCCC------CcHHHHHHHh-cCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11110 0111222221 111 234788999854421 0 011000000 000000 012344556
Q ss_pred EeccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 300 LTSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 300 vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
.|+.+..+..........+.+.+++.+|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6665554444445556789999999999888887765
No 183
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0032 Score=68.63 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=89.8
Q ss_pred cccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 161 FDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
-+|-++..++|++.|. .-+-+++++||++|+|||+|++.+++....+ | +-++++.-.|..++-.-=-..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhccccccc
Confidence 3599999999999886 2345799999999999999999999988744 4 344555444444432110001
Q ss_pred hCCCcccCcCHHHHHHHHHHHHh--ccCeEEEEecCccccc---------ccccccCCCCcccccccc-----CCCCeEE
Q 005834 235 LGIKFELNESIFDRANRLCRVLK--NEERHLIILDNIWGEL---------KFDEVGIPSGDVKKERMD-----DQRRCTI 298 (675)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~-----~~~~s~i 298 (675)
+|.- . -++.+.++ +.++-+++||.++... .+-++..|- ..+.|.+ .-.=|.|
T Consensus 400 IGam------P----GrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPE--QN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 400 IGAM------P----GKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPE--QNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccC------C----hHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHh--hcCchhhccccCccchhhe
Confidence 1100 0 12222222 1356788999885441 010111110 0011100 0112334
Q ss_pred E-Eeccc-hh-HHhhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 299 I-LTSRR-QD-LLRNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 299 l-vTtR~-~~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
+ |||-+ -+ +....+....++++.+-+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 33333 22 333345667799999999999888887775
No 184
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.22 E-value=0.0033 Score=68.01 Aligned_cols=182 Identities=13% Similarity=0.094 Sum_probs=90.4
Q ss_pred ccccccHHHHHHHHHHH---hc-------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHH
Q 005834 158 YEAFDSRKKVFQDVLEA---LK-------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~---L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 227 (675)
..++.|.+..++.+... +. -...+-|.++|++|.|||.+|+.+++..... | +-+..+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------h
Confidence 34566766555554432 11 1235678999999999999999999987532 2 1222111 1
Q ss_pred HHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccc-ccccC--CCCcccccc---cc-CCCCeEEEE
Q 005834 228 QDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKF-DEVGI--PSGDVKKER---MD-DQRRCTIIL 300 (675)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-~~~~~--~~~~~~~~~---~~-~~~~s~ilv 300 (675)
.. .. ....+.....+.+......+++|++|+++....- ..-.. ....++..+ +. ...+.-||.
T Consensus 296 ~~--------~~--vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 FG--------GI--VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred cc--------cc--cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 10 00 0111223333333333347899999999643110 00000 000000001 11 223344555
Q ss_pred eccchhHHhhhc----CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 301 TSRRQDLLRNVM----NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 301 TtR~~~va~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
||.+.......+ .-...+.++.-+.++-.++|+.+.........-......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 665443221111 224578888888999999998887532211100112456666666643
No 185
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.0061 Score=63.55 Aligned_cols=184 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
....+.|+|..|.|||.|++.+++.......=..+++++ .+....+++..+.. +....+++.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y-~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY-S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh-c
Confidence 467899999999999999999999987542222344442 23344444433321 2234444444 2
Q ss_pred cCeEEEEecCcccccc---ccc-ccCCCCccccccccCCCCeEEEEeccchhHH--------hhhcCCcceEecCCCCHH
Q 005834 259 EERHLIILDNIWGELK---FDE-VGIPSGDVKKERMDDQRRCTIILTSRRQDLL--------RNVMNSQKEIQIDALSKE 326 (675)
Q Consensus 259 ~k~~LlVlDdv~~~~~---~~~-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va--------~~~~~~~~~~~l~~L~~~ 326 (675)
-=++++||++-... |++ +...|.. + ...|..||+|++...-. ...+..+-.+.+.+.+.+
T Consensus 176 --~dlllIDDiq~l~gk~~~qeefFh~FN~----l--~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 176 --LDLLLIDDIQFLAGKERTQEEFFHTFNA----L--LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred --cCeeeechHhHhcCChhHHHHHHHHHHH----H--HhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHH
Confidence 23889999965432 221 2222221 1 22344899998653211 122445679999999999
Q ss_pred HHHHHHHHHhCCCCCCCCchHHHHHHHHHhCC----ChhHHHHHHHHHh--c--CChHHHHHHHHHHhh
Q 005834 327 EALHLFQKIVGDSMKTSAFQPIAHEIVGRCGE----LPVALITLAKALK--N--MSLETWKYVLRQLRS 387 (675)
Q Consensus 327 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G----lPLai~~~~~~L~--~--~~~~~w~~~l~~l~~ 387 (675)
....++.+.+...... --+++..-|++.... +.-|+..+..+-. + .+.+.-..++..+..
T Consensus 248 ~r~aiL~kka~~~~~~-i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 248 TRLAILRKKAEDRGIE-IPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 9999999877522111 112344444444333 3344433333332 2 156666666666443
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.024 Score=57.84 Aligned_cols=165 Identities=11% Similarity=0.150 Sum_probs=94.7
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhcc-------------------CCCCeEEEEEeCCCCCHH
Q 005834 166 KVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTED-------------------KLFDKVAMAEVTENPDHQ 225 (675)
Q Consensus 166 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~ 225 (675)
...+.+.+.+..++ ...+.+.|+.|+||+++|+.++...--. .|-| ..|+.-...
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~---- 84 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE---- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC----
Confidence 34455666665554 4578899999999999999988765321 1222 222221100
Q ss_pred HHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEE
Q 005834 226 KIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTII 299 (675)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~il 299 (675)
...-..+.+..+.+.+. .+++=++|+|++.... ..+.+...+.. -..++.+|
T Consensus 85 ---------------~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fi 142 (319)
T PRK06090 85 ---------------GKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-------PAPNCLFL 142 (319)
T ss_pred ---------------CCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-------CCCCeEEE
Confidence 00011122233333332 2345688899986653 23333222222 22345544
Q ss_pred E-eccchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 300 L-TSRRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 300 v-TtR~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
+ |+....+.....+....+.+.+++.+++.+.+.... .+ .+..++..++|.|+.+..+
T Consensus 143 L~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 143 LVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc----hHHHHHHHcCCCHHHHHHH
Confidence 4 555555555555667799999999999998886542 11 2457789999999876544
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.20 E-value=0.0027 Score=58.26 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHhccCCcc-EEEEEcCCCCcHHHHHHHHHHHhhccCC------------------CCeEEEEEeCCC--
Q 005834 163 SRKKVFQDVLEALKDDKLN-IIGVYGMGGVGKTTLVKQVAKQVTEDKL------------------FDKVAMAEVTEN-- 221 (675)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~~~~wv~vs~~-- 221 (675)
|.++..+.+.+.+..++.+ .+.++|..|+||+++|..+++..--... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5566777777777766654 6799999999999999999886543221 222444433322
Q ss_pred -CCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEE
Q 005834 222 -PDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTI 298 (675)
Q Consensus 222 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i 298 (675)
..++++. ++...+..... .+++=++|+||++... .++.+...+.+ -..++.+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEe-------pp~~~~f 135 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEE-------PPENTYF 135 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHS-------TTTTEEE
T ss_pred hhhHHHHH-HHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcC-------CCCCEEE
Confidence 2333332 44444433221 1356688999997652 33443322222 3456777
Q ss_pred EEeccchh-HHhhhcCCcceEecCCCC
Q 005834 299 ILTSRRQD-LLRNVMNSQKEIQIDALS 324 (675)
Q Consensus 299 lvTtR~~~-va~~~~~~~~~~~l~~L~ 324 (675)
|++|++.. +..........+.+.++|
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 77776654 444445556677777664
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.015 Score=59.36 Aligned_cols=177 Identities=8% Similarity=0.052 Sum_probs=94.3
Q ss_pred HHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC-----c-
Q 005834 167 VFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIK-----F- 239 (675)
Q Consensus 167 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~- 239 (675)
..+.+.+.+..+.. ....+.|+.|+||+++|+.++...--...... .....-...+.+...-+.+ .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 34556666665554 56779999999999999999887642211100 0000000000000000000 0
Q ss_pred ccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccc-hhHHhhhc
Q 005834 240 ELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRR-QDLLRNVM 312 (675)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~va~~~~ 312 (675)
....-..+....+.+.+. .+++=++|+|+++... ..+.+...+.. -..++.+|++|.+ ..+.....
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-------Pp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-------PRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-------CCCCeEEEEEECChHhCchHHH
Confidence 000111233334444332 2455688899987653 23333222222 2334555555554 44444444
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHH
Q 005834 313 NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVAL 363 (675)
Q Consensus 313 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 363 (675)
+....+.+.++++++..+.+....... ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 556799999999999998888764211 123567788899999643
No 189
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.17 E-value=0.024 Score=59.01 Aligned_cols=204 Identities=19% Similarity=0.254 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCeEEEEEeCCC---CCHHHHHHHHHHHhCCC-
Q 005834 164 RKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLV-KQVAKQVTEDKLFDKVAMAEVTEN---PDHQKIQDKLASDLGIK- 238 (675)
Q Consensus 164 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~- 238 (675)
|.+..++|..||.+..-..|.|.|+-|+||+.|+ .++.++.+ .+..+.+.+- .+-..+++.++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999877889999999999999999 77766543 2666665432 24455666666666421
Q ss_pred -----------------------cccCcCHHHHHHHHHH----HHh-------------------------ccCeEEEEe
Q 005834 239 -----------------------FELNESIFDRANRLCR----VLK-------------------------NEERHLIIL 266 (675)
Q Consensus 239 -----------------------~~~~~~~~~~~~~l~~----~l~-------------------------~~k~~LlVl 266 (675)
..-..+.+.....+.+ .|+ ..++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1111222322222211 111 012568999
Q ss_pred cCccccc-----------ccccccCCCCccccccccCCCCeEEEEeccchhHHh---hhc--CCcceEecCCCCHHHHHH
Q 005834 267 DNIWGEL-----------KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLR---NVM--NSQKEIQIDALSKEEALH 330 (675)
Q Consensus 267 Ddv~~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~---~~~--~~~~~~~l~~L~~~e~~~ 330 (675)
|+.-... +|... +-..+-..||++|-+..... ..+ ...+.+.|...+++.|..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~-----------Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS-----------LVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH-----------HHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 9985432 23332 11345567888887654432 122 345688999999999999
Q ss_pred HHHHHhCCCCCC-------------------CCchHHHHHHHHHhCCChhHHHHHHHHHh-cCC-hHHHHHHHHH
Q 005834 331 LFQKIVGDSMKT-------------------SAFQPIAHEIVGRCGELPVALITLAKALK-NMS-LETWKYVLRQ 384 (675)
Q Consensus 331 Lf~~~~~~~~~~-------------------~~l~~~~~~I~~~c~GlPLai~~~~~~L~-~~~-~~~w~~~l~~ 384 (675)
+...+....... .....-....++.+||=-.-+..+++.++ +.+ .+..+.+.++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q 298 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ 298 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999887532110 12334456778888998888888888888 333 3344444443
No 190
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=0.00011 Score=79.04 Aligned_cols=128 Identities=22% Similarity=0.292 Sum_probs=99.8
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCcccccCCCCCcEEE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILS 619 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~ 619 (675)
.+..+..+.+..+.... ..+-+..+++|..|++.+|.+..+...++.+.+|++|++++|.|..+..+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~---~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK---ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhh---hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 35555666554333222 112256789999999999999988765889999999999999999999999999999999
Q ss_pred eeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 620 FRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 620 l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+.+|.|..++ .+..+++|+.+++++|. +..++..... .+.+|+.+++.++.
T Consensus 147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~-~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 147 LSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDELS-ELISLEELDLGGNS 197 (414)
T ss_pred eccCcchhcc-CCccchhhhcccCCcch-hhhhhhhhhh-hccchHHHhccCCc
Confidence 9999998887 46669999999999987 5556542023 58899988887764
No 191
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0071 Score=65.75 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=88.6
Q ss_pred ccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
+-+|.++..++|++++. +-+-++++.+|++|+|||++|+.++.-...+ | +.++|+.-.+..++-.-=-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhccccee
Confidence 44599999999999886 3456899999999999999999999988644 4 34566666565554211001
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhc--cCeEEEEecCccccc---------ccccccCCCCcccccccc-----CCCCeE
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKN--EERHLIILDNIWGEL---------KFDEVGIPSGDVKKERMD-----DQRRCT 297 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~--~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~-----~~~~s~ 297 (675)
..|. -. -++.+.|+. -.+-|+.+|.|+..- .+-++..|- ....|++ --.-|+
T Consensus 487 YVGA------MP----GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPE--QNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 487 YVGA------MP----GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPE--QNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eecc------CC----hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChh--hccchhhhccccccchhh
Confidence 1110 00 123333321 135688888885431 011111111 0011111 112356
Q ss_pred EEEe-ccch--hHHhhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 298 IILT-SRRQ--DLLRNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 298 ilvT-tR~~--~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
|++. |-+. .+..........|++.+-..+|-..+-.++.
T Consensus 555 VLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6543 3221 1112233445688888888888777766654
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0087 Score=62.77 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=96.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
....+.+.|++|+|||+||..++.... |..+--++ ++++. .-++......+.+...+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiS------pe~mi-------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIIS------PEDMI-------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeC------hHHcc-------------CccHHHHHHHHHHHHHH
Confidence 345677899999999999999988765 65433332 11110 11222333334333332
Q ss_pred ---cCeEEEEecCcccccccccccCCCCccc--------cccccCCCCeEEEEeccchhHHhhhcC----CcceEecCCC
Q 005834 259 ---EERHLIILDNIWGELKFDEVGIPSGDVK--------KERMDDQRRCTIILTSRRQDLLRNVMN----SQKEIQIDAL 323 (675)
Q Consensus 259 ---~k~~LlVlDdv~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~ilvTtR~~~va~~~~~----~~~~~~l~~L 323 (675)
..--.||+||+....+|-.++..+.+++ +...+.++.--|+-||....+.. .|+ -...|.++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 2446899999999889988887776532 22122333444556666666653 222 2347888888
Q ss_pred CH-HHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 324 SK-EEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 324 ~~-~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
+. ++..+.++..- ...+.+.+.++++...+| +-.+|+.+-.++.
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 87 66777766542 122444556677777766 3344555444443
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.001 Score=64.28 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT 219 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 219 (675)
-.++|+|..|+|||||+..+...... .|.++++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEecC
Confidence 46789999999999999999988764 48888877553
No 194
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=4e-05 Score=73.30 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=38.9
Q ss_pred CCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC---cccccCCCCCcE
Q 005834 541 CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD---IVIVGQLKKLEI 617 (675)
Q Consensus 541 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~---~~~i~~l~~L~~ 617 (675)
+.+.+.|++.++....+. +...|+.|.||.|+-|+|+++. .+..|++|+.|.|+.|.|.. +..+.+|++|++
T Consensus 18 l~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 445555555444332222 2445566666666666655542 24555555555555555443 334444555555
Q ss_pred EEeeCC
Q 005834 618 LSFRGS 623 (675)
Q Consensus 618 L~l~~~ 623 (675)
|+|..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 555444
No 195
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.012 Score=62.79 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=63.9
Q ss_pred ccccccHHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHH
Q 005834 158 YEAFDSRKKVFQDVLEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQ 225 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 225 (675)
...+-|-++.+.++.+.+. . ...+=|.++|++|.|||.||+.++++..+- | +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 4567788888888777664 1 235678899999999999999999998864 3 333322
Q ss_pred HHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 226 KIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+|+.... ...++....+++.-.+.-++++++|+++-.
T Consensus 258 ----eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2222221 223345556666655567999999998654
No 196
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00028 Score=67.52 Aligned_cols=100 Identities=23% Similarity=0.342 Sum_probs=48.6
Q ss_pred CCccEEEecCCCCCCCccccccccCCCEEEeccc--cCCC--cccccCCCCCcEEEeeCCCCCc---cchhhcCCCCCCE
Q 005834 568 EGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYC--RLKD--IVIVGQLKKLEILSFRGSDIER---LPLEFGQLTRLQL 640 (675)
Q Consensus 568 ~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~--~l~~--~~~i~~l~~L~~L~l~~~~i~~---lp~~i~~L~~L~~ 640 (675)
..|..|++.++.++++- ++..|++|++|.++.| ++.. +....++++|++|++++|+++- ++ ....+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 33444444444443321 2334556666666666 3332 2233444666666666665542 22 2445556666
Q ss_pred ecCcCcccCc--ccchhhhhccCCccCEEeCc
Q 005834 641 LDLSNCRRLE--VITPNVICQSWLHLEVFGMA 670 (675)
Q Consensus 641 L~l~~~~~l~--~lp~~~~~~~L~~L~~L~l~ 670 (675)
|++.+|.... ..-..++. -+++|.+|+-.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~-ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFL-LLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHH-Hhhhhcccccc
Confidence 6666665221 22233343 45666655543
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.0011 Score=60.99 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=77.4
Q ss_pred ccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccc-cccCCCEEEeccccCCC---cccccCCCCCcEE
Q 005834 543 RLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLG-RLINLQTLCLEYCRLKD---IVIVGQLKKLEIL 618 (675)
Q Consensus 543 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~-~L~~L~~L~l~~~~l~~---~~~i~~l~~L~~L 618 (675)
+...+++..|...... .|..++.|..|.+++|+|+.+-+.++ .+++|..|.|.+|+|.. +..+..++.|++|
T Consensus 43 ~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhcc----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4455666554433222 26778999999999999998855554 45789999999998776 5677788999999
Q ss_pred EeeCCCCCccch----hhcCCCCCCEecCcCc
Q 005834 619 SFRGSDIERLPL----EFGQLTRLQLLDLSNC 646 (675)
Q Consensus 619 ~l~~~~i~~lp~----~i~~L~~L~~L~l~~~ 646 (675)
.+-+|.++..+. -+.++++|+.||...-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999999887665 3889999999999763
No 198
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.04 E-value=0.003 Score=60.97 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHh-C---CC--cccCcCH---HHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDL-G---IK--FELNESI---FDRAN 250 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-~---~~--~~~~~~~---~~~~~ 250 (675)
-+++.|+|.+|+|||+++.+++...... ...++|++... +++..+.+ +++.. . .. .....+. .....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4699999999999999999998876533 56789999876 66655544 33221 0 00 0001111 22344
Q ss_pred HHHHHHhccCeEEEEecCcc
Q 005834 251 RLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 251 ~l~~~l~~~k~~LlVlDdv~ 270 (675)
.+.+.+...+.-++|+|.+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 45555544456689999884
No 199
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.04 E-value=0.00036 Score=69.19 Aligned_cols=151 Identities=19% Similarity=0.196 Sum_probs=100.0
Q ss_pred CCeEEecCCCCCcc--CCCC----cCCCccceeEeccccCcccc--c---------chhhhcCCCCccEEEecCCCCCCC
Q 005834 521 GPIAISLPYRGIQV--LPER----LQCPRLELLLLLEKGGGSMP--I---------SDHFFDGTEGLRVLNFTGIHFSSL 583 (675)
Q Consensus 521 ~~~~lsl~~~~~~~--~~~~----~~~~~L~~L~l~~~~~~~~~--~---------~~~~~~~l~~L~~L~l~~~~~~~l 583 (675)
+.+.+.++.|.+.. ++.. ..+..|+.|.+..+..+... . ...-..+-+.||++..+.|++..-
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 67778888776632 2111 15778888888554432110 0 111234567899999998887643
Q ss_pred c-----cccccccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCC-----ccchhhcCCCCCCEecCcCcc
Q 005834 584 P-----SSLGRLINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIE-----RLPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 584 p-----~~i~~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~ 647 (675)
+ ..+...+.|+.+.++.|.|.. ...+..+++|+.|||+.|.++ .+...+..+++|+.|+++.|-
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 3 335667889999999888664 246778899999999998776 344556677889999999886
Q ss_pred cCcccc-----hhhhhccCCccCEEeCcCCC
Q 005834 648 RLEVIT-----PNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 648 ~l~~lp-----~~~~~~~L~~L~~L~l~~c~ 673 (675)
++.-- ..+-. ..++|++|.+.+|.
T Consensus 253 -l~~~Ga~a~~~al~~-~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 253 -LENEGAIAFVDALKE-SAPSLEVLELAGNE 281 (382)
T ss_pred -cccccHHHHHHHHhc-cCCCCceeccCcch
Confidence 44321 11222 57889999988873
No 200
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0018 Score=70.13 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=89.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN--PDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
..-|.|.|..|+|||+||+.+++... +.+.-.+.+++++.- ...+.+++.+-. ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 35688999999999999999999987 455556777776643 233333332221 2222333
Q ss_pred ccCeEEEEecCcccc--------cccccc----cCCCCccccccccCCCCeEEEEeccchhHHhhhc----CCcceEecC
Q 005834 258 NEERHLIILDNIWGE--------LKFDEV----GIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVM----NSQKEIQID 321 (675)
Q Consensus 258 ~~k~~LlVlDdv~~~--------~~~~~~----~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~~----~~~~~~~l~ 321 (675)
. .+-+|||||++-. .+|... ...+.+++..+...+..-++|.|.....-..... -......|.
T Consensus 493 ~-~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 Y-APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred h-CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 2 6899999998533 123221 1112223333333444445555555433221111 123477888
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 322 ALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 322 ~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
.+...+-.++++.........- ......-+..+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCc
Confidence 9988888888777664332111 122333478888874
No 201
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.03 E-value=0.0039 Score=59.10 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCccc---CcCHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFEL---NESIFDRANRLCRV 255 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 255 (675)
++||.+||+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++.+... ..+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999988888887754 34566777542 234567788889999877432 22334444444444
Q ss_pred HhccCeEEEEecCc
Q 005834 256 LKNEERHLIILDNI 269 (675)
Q Consensus 256 l~~~k~~LlVlDdv 269 (675)
...++.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44323347777765
No 202
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.97 E-value=0.004 Score=61.29 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcC--
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKL----FDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NES-- 244 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~-- 244 (675)
-.++.|+|.+|+|||+||.+++-....... -..++|++....++..++. ++++..+..... ..+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 468999999999999999999865432221 3579999988877765443 344444332110 111
Q ss_pred -HHHHHHHHHHHHhcc-CeEEEEecCccc
Q 005834 245 -IFDRANRLCRVLKNE-ERHLIILDNIWG 271 (675)
Q Consensus 245 -~~~~~~~l~~~l~~~-k~~LlVlDdv~~ 271 (675)
..+....+.+.+.+. +.-++|+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 223334555555555 678999999853
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.95 E-value=0.011 Score=68.36 Aligned_cols=180 Identities=17% Similarity=0.201 Sum_probs=95.0
Q ss_pred ccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 158 YEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
...+.|.+...+.+.+.+. -...+-+.++|++|+|||++|+.+++..... | +.++.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh----
Confidence 3456677777666655442 1234568899999999999999999986532 2 22221
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc--ccCC-CCcccccc---c---cCCCC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE--VGIP-SGDVKKER---M---DDQRR 295 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~~~~-~~~~~~~~---~---~~~~~ 295 (675)
.++ +... ....+.....+........+.+|++|+++....-.. .... ...+...+ + ....+
T Consensus 521 ~~l----~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 PEI----LSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HHH----hhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111 1111 111223344455444445689999999864311000 0000 00000101 1 12334
Q ss_pred eEEEEeccchhHHhh-hc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 296 CTIILTSRRQDLLRN-VM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 296 s~ilvTtR~~~va~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
..||.||........ .. .-...+.++..+.++-.++|+.+.......++. ....+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 556666655433221 22 234578888889998888988766433222211 1456777777754
No 204
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.0091 Score=57.02 Aligned_cols=181 Identities=14% Similarity=0.239 Sum_probs=98.1
Q ss_pred CccccccHHHHHHH---HHHHhcc------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHH
Q 005834 157 DYEAFDSRKKVFQD---VLEALKD------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 157 ~~~~~~gr~~~~~~---l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 227 (675)
...+++|.++...+ |++.|.+ -.++-|..+|++|.|||.+|+.+++..++- | +.+. ..++
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~l 187 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATEL 187 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHH
Confidence 34567888876544 5666653 347889999999999999999999988753 2 2221 1111
Q ss_pred HHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc---ccccccCCCCcccccc------ccCCCCeEE
Q 005834 228 QDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL---KFDEVGIPSGDVKKER------MDDQRRCTI 298 (675)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~------~~~~~~s~i 298 (675)
|-+..| +.......+.+.-...-++.+.+|.++-.. -++++..-.....+.+ +..+.|...
T Consensus 188 ---iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 ---IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred ---HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 112221 112334444444444568999999875431 1111111111111111 124455555
Q ss_pred EEeccchhHHhhhcCC--cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 299 ILTSRRQDLLRNVMNS--QKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 299 lvTtR~~~va~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
|-.|.+.........+ ...++..--+++|-.+++..++..-.-+.+ .-.+.++++.+|+.
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~S 319 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGMS 319 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCCC
Confidence 5556554443222222 235566666788888888888752211111 11456666666653
No 205
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.91 E-value=0.012 Score=52.54 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=75.4
Q ss_pred ChhhhhhhHH-HHHHHHhHhhhHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005834 1 MAVEFCLGGF-SSIVSEGAKSLFKPIIRQISYVFKYQSYVDELKDQVMQLGCKREMVQQPVNHARLQGDELYEGVADWLH 79 (675)
Q Consensus 1 MA~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~ 79 (675)
|+.++++|++ +.+++.+...+.....+.. ..+.-+++|...+..|..++++.+..+...+..-+.-++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~-----------~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e 69 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSL-----------SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIE 69 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHH
Confidence 3444454444 3356665555555433332 346677888888888888888888766556666678889
Q ss_pred HHHHHHhhhhhhhhhhhhhhhcccccCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 005834 80 SVDEFISEGVANSIIDDENGAKKYCFKGLCPNLLSRYKLSKKAAKAAKDAADL 132 (675)
Q Consensus 80 ~v~~~~~~~~~ed~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i 132 (675)
++.+...+ ++++++.+...+ ++++...++.+++|+++.+.+...
T Consensus 70 ~L~~~L~~--g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 70 RLKELLEK--GKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHH--HHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 99999999 999988765432 244556677788888877777654
No 206
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.00026 Score=68.59 Aligned_cols=81 Identities=25% Similarity=0.356 Sum_probs=37.5
Q ss_pred CCCCccEEEecCCCCCC---CccccccccCCCEEEeccccCCC-cccc-cCCCCCcEEEeeCCCC--CccchhhcCCCCC
Q 005834 566 GTEGLRVLNFTGIHFSS---LPSSLGRLINLQTLCLEYCRLKD-IVIV-GQLKKLEILSFRGSDI--ERLPLEFGQLTRL 638 (675)
Q Consensus 566 ~l~~L~~L~l~~~~~~~---lp~~i~~L~~L~~L~l~~~~l~~-~~~i-~~l~~L~~L~l~~~~i--~~lp~~i~~L~~L 638 (675)
..+.++.|||.+|.++. +-.-+.+|++|++|+|+.|.+.. +.+. -.+.+|++|-|.++.+ +.....+..++++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34455555555555542 12223445555555555555443 3333 2445555555555532 2333334444444
Q ss_pred CEecCcCc
Q 005834 639 QLLDLSNC 646 (675)
Q Consensus 639 ~~L~l~~~ 646 (675)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 44444443
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.035 Score=57.19 Aligned_cols=104 Identities=12% Similarity=0.175 Sum_probs=62.0
Q ss_pred HHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeE-EEEeccchhHHhhhcCCcceEe
Q 005834 247 DRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCT-IILTSRRQDLLRNVMNSQKEIQ 319 (675)
Q Consensus 247 ~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~-ilvTtR~~~va~~~~~~~~~~~ 319 (675)
+.+..+.+.+. .+++-++|+|+++... ..+.+...+.. -.+++. |++|++...+.....+....+.
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~ 187 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-------PPPGTVFLLVSARIDRLLPTILSRCRQFP 187 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-------CCcCcEEEEEECChhhCcHHHHhcCEEEE
Confidence 34444555443 2345688899987653 33443322322 233444 5555555655554455567999
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 320 IDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 320 l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
+.+++.++..+.+.... .+. ...++..++|.|+.+..+
T Consensus 188 ~~~~~~~~~~~~L~~~~-----~~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 188 MTVPAPEAAAAWLAAQG-----VAD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ecCCCHHHHHHHHHHcC-----CCh----HHHHHHHcCCCHHHHHHH
Confidence 99999999998887651 111 234678889999755444
No 208
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.055 Score=58.34 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
..+|+|+|.+|+||||++..++.....+.....+..++... .....+.+....+.++.......+..+ .....+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~-L~~aL~~l~- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES-LLDLLERLR- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH-HHHHHHHhc-
Confidence 47999999999999999999887665432223455554422 112233344444555554432222222 233334443
Q ss_pred cCeEEEEecCc
Q 005834 259 EERHLIILDNI 269 (675)
Q Consensus 259 ~k~~LlVlDdv 269 (675)
+.-+|++|..
T Consensus 428 -~~DLVLIDTa 437 (559)
T PRK12727 428 -DYKLVLIDTA 437 (559)
T ss_pred -cCCEEEecCC
Confidence 3458888887
No 209
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.89 E-value=0.0071 Score=59.08 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDK----LFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 246 (675)
-.++.|+|.+|+|||+||.+++....... .=..++|++....++...+. ++++..+.... ...+..
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHH
Confidence 46999999999999999999987654321 01567899988777765543 33333322110 012333
Q ss_pred HHHHHHHHHHh---ccCeEEEEecCccc
Q 005834 247 DRANRLCRVLK---NEERHLIILDNIWG 271 (675)
Q Consensus 247 ~~~~~l~~~l~---~~k~~LlVlDdv~~ 271 (675)
+....+.+... ..+.-|+|+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 33333333322 34566999999854
No 210
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.87 E-value=0.0045 Score=62.89 Aligned_cols=85 Identities=19% Similarity=0.262 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (675)
-+++-|+|.+|+||||||.+++...... -..++||+..+.++.. .++.++.+.+ .+...++....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4699999999999999999988776543 3567899887766653 4566665422 12234444444444
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.+..+..-++|+|.+..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 44455677999999853
No 211
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.87 E-value=0.0055 Score=71.29 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHHhc-------c--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEALK-------D--DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.++...-.. ....+-++++.-... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 356799999999888874 1 123478999999999999999998876322 122233333321111 1
Q ss_pred HHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 230 KLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
.+.+.+|.+.. .... +....+.+.++.....+|+||++...
T Consensus 640 ~~~~l~g~~~g-yvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPG-YVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCC-cccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 12222333221 1110 01112344455445679999999643
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.85 E-value=0.014 Score=67.54 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=92.8
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+.++.|.++.++++.+++.- ...+-+.++|.+|+|||+||+.+++..... | +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH----
Confidence 344577999988888776531 234678899999999999999999876421 2 222211
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc-----ccCCCCccccccccC--CCCe
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE-----VGIPSGDVKKERMDD--QRRC 296 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-----~~~~~~~~~~~~~~~--~~~s 296 (675)
++. ... ..........+.+......+.+|++|++.....-.. +.......+..++++ ..+.
T Consensus 247 --~i~----~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 247 --EIM----SKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred --HHh----ccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 111 000 011122333344444334678999999854311000 000000000011111 2233
Q ss_pred EEEE-eccchhHHhhhc----CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 297 TIIL-TSRRQDLLRNVM----NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 297 ~ilv-TtR~~~va~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
.+++ ||....-..... .-...+.+...+.++-.+++..+.......++ .....+++.+.|..
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCC
Confidence 3444 443322111111 12346778888888888888866543221111 12567888888865
No 213
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.85 E-value=0.0014 Score=61.08 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=45.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
...-+.++|..|+|||.||..+.+....+ =..+.|+++ .+++..+-. ... ... ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~----~~~-~~~----~~~~~~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQ----SRS-DGS----YEELLKRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHC----CHC-CTT----HCHHHHHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceeccccc----ccc-ccc----hhhhcCccc-
Confidence 34579999999999999999999887653 223566643 445554432 111 111 223344454
Q ss_pred cCeEEEEecCcccc
Q 005834 259 EERHLIILDNIWGE 272 (675)
Q Consensus 259 ~k~~LlVlDdv~~~ 272 (675)
+-=||||||+-..
T Consensus 108 -~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 -RVDLLILDDLGYE 120 (178)
T ss_dssp -TSSCEEEETCTSS
T ss_pred -cccEeccccccee
Confidence 3458889999654
No 214
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.0082 Score=58.94 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
+...+.++|.+|+|||.||..+++....+ ...++++++. +++..|-...... .. ...+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~----~~----~~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG----QS----GEKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc----ch----HHHHHHHhc-
Confidence 34678999999999999999999998754 3345666543 4555554433211 11 123444443
Q ss_pred cCeEEEEecCccc
Q 005834 259 EERHLIILDNIWG 271 (675)
Q Consensus 259 ~k~~LlVlDdv~~ 271 (675)
+--||||||+..
T Consensus 163 -~~dLLiIDDlg~ 174 (248)
T PRK12377 163 -KVDLLVLDEIGI 174 (248)
T ss_pred -CCCEEEEcCCCC
Confidence 457999999943
No 215
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.063 Score=55.45 Aligned_cols=166 Identities=10% Similarity=0.069 Sum_probs=94.8
Q ss_pred HHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhcc--------------------CCCCeEEEEEeCCCCCH
Q 005834 166 KVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTED--------------------KLFDKVAMAEVTENPDH 224 (675)
Q Consensus 166 ~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~ 224 (675)
..-+++.+.+..++ ...+.+.|+.|+||+++|..++...--. .|-|. .++.-....
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~~-- 85 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKGK-- 85 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEeccccc--
Confidence 34466777776555 4567799999999999999988866321 11121 222111000
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEE
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTI 298 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i 298 (675)
..-..+....+.+.+. .+++-++|+|+++... .-+.+...+.+ -..++.+
T Consensus 86 -----------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-------Pp~~t~f 141 (334)
T PRK07993 86 -----------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-------PPENTWF 141 (334)
T ss_pred -----------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-------CCCCeEE
Confidence 0011223333444332 2456689999986653 22332222222 2234555
Q ss_pred EEec-cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHH
Q 005834 299 ILTS-RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 299 lvTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 364 (675)
|++| +...+.....+....+.+.+++.+++...+....+ .+ .+.+..++..++|.|..+.
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----~~--~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT----MS--QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC----CC--HHHHHHHHHHcCCCHHHHH
Confidence 5544 44555544455567899999999999888765421 11 2346788999999996443
No 216
>PRK07261 topology modulation protein; Provisional
Probab=96.82 E-value=0.0026 Score=59.05 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEE
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTED-KLFDKVAM 215 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 215 (675)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775432 23455555
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.81 E-value=0.0011 Score=57.62 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999863
No 218
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.78 E-value=0.00053 Score=68.04 Aligned_cols=129 Identities=20% Similarity=0.238 Sum_probs=92.2
Q ss_pred cCCCeEEecCCCCCccCCCC------cCCCccceeEeccccCcccc--cchhhhcCCCCccEEEecCCCCC-----CCcc
Q 005834 519 QEGPIAISLPYRGIQVLPER------LQCPRLELLLLLEKGGGSMP--ISDHFFDGTEGLRVLNFTGIHFS-----SLPS 585 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~-----~lp~ 585 (675)
+.++|.+..+.|.+..-+.. ...+.|+.+.+..|...... .....+..+++|++|||.+|-++ .+.+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 44566666666665433221 13578888888766543322 23344778999999999999887 2556
Q ss_pred ccccccCCCEEEeccccCCC--c----ccc-cCCCCCcEEEeeCCCCC-----ccchhhcCCCCCCEecCcCcc
Q 005834 586 SLGRLINLQTLCLEYCRLKD--I----VIV-GQLKKLEILSFRGSDIE-----RLPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 586 ~i~~L~~L~~L~l~~~~l~~--~----~~i-~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~ 647 (675)
.++.+++|+.|++++|.++. - ..+ ...++|++|.+.+|.|+ .+-..+...+.|..|++++|.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 67889999999999999875 1 122 24789999999999887 344457778899999999987
No 219
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.78 E-value=0.0054 Score=62.36 Aligned_cols=85 Identities=21% Similarity=0.270 Sum_probs=57.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (675)
-+++-|+|++|+||||||.+++...... -..++||+....+++. .++.++.+.+ .+.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4688999999999999999988776533 4568899887776653 3555554322 12233444444444
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.+..+..-++|+|.|-.
T Consensus 128 li~s~~~~lIVIDSvaa 144 (325)
T cd00983 128 LVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHhccCCCEEEEcchHh
Confidence 44555677999999853
No 220
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.77 E-value=0.0046 Score=63.35 Aligned_cols=78 Identities=19% Similarity=0.352 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhc-----cCCCCeEEEEE----eCCCC--
Q 005834 160 AFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE-----DKLFDKVAMAE----VTENP-- 222 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~F~~~~wv~----vs~~~-- 222 (675)
.++|-++.++++++++. +...+++.++|++|+||||||+.+.+.... .+.|-..-|.. +.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~ 131 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLH 131 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcc
Confidence 57899999999999986 234588999999999999999999998764 23455555622 22221
Q ss_pred -CHHHHHHHHHHHhCC
Q 005834 223 -DHQKIQDKLASDLGI 237 (675)
Q Consensus 223 -~~~~~~~~i~~~l~~ 237 (675)
-+.+.-..+.+.++.
T Consensus 132 l~p~~~r~~~~~~~~~ 147 (361)
T smart00763 132 LFPDELREDLEDEYGI 147 (361)
T ss_pred cCCHHHHHHHHHHhCC
Confidence 244555566666664
No 221
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.77 E-value=0.024 Score=56.40 Aligned_cols=168 Identities=16% Similarity=0.216 Sum_probs=99.8
Q ss_pred ccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEeCCCCCH-HHHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF-DKVAMAEVTENPDH-QKIQDKLAS 233 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~-~~~~~~i~~ 233 (675)
.++|-.++-.++-.++. -++..-+.|+|+.|.|||+|......+.+ .| +..+-|......-. +-.++.|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHHH
Confidence 46688887777777775 35566788999999999999988888732 23 34444555444322 234555555
Q ss_pred HhCC----CcccCcCHHHHHHHHHHHHhc-----cCeEEEEecCcccccc-------cccccCCCCccccccccCCCCeE
Q 005834 234 DLGI----KFELNESIFDRANRLCRVLKN-----EERHLIILDNIWGELK-------FDEVGIPSGDVKKERMDDQRRCT 297 (675)
Q Consensus 234 ~l~~----~~~~~~~~~~~~~~l~~~l~~-----~k~~LlVlDdv~~~~~-------~~~~~~~~~~~~~~~~~~~~~s~ 297 (675)
++.. ......+..+....+...|+. +-+..+|+|.++--.. ++-+...-.. ..+=+-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~-------r~Pici 174 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA-------RAPICI 174 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc-------CCCeEE
Confidence 5532 222234455666777777763 2357888887743311 1111111111 455677
Q ss_pred EEEeccchhHH------hhhcCCcceEecCCCCHHHHHHHHHHHhC
Q 005834 298 IILTSRRQDLL------RNVMNSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 298 ilvTtR~~~va------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
|-+|||-...- ........++-++.++-++..+++++...
T Consensus 175 ig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 175 IGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 78999875332 11122233666777888888888887763
No 222
>PRK09354 recA recombinase A; Provisional
Probab=96.76 E-value=0.0055 Score=62.79 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (675)
-+++-|+|.+|+||||||.+++...... -..++||.....+++. .++.++.+.+ .+...++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999988776543 4668899988877753 4566665422 12234444444444
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.++.++.-++|+|.|-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 45555677999999853
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.75 E-value=0.0092 Score=68.82 Aligned_cols=102 Identities=18% Similarity=0.285 Sum_probs=58.9
Q ss_pred ccccHHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKD-------D--KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.++.... ...+.++.++-.... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 356888888887777651 1 234678999999999999999998763 234555554422211 1
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+.+.++.+.. ... .+....+.+.+.....-+++||+++..
T Consensus 526 ~~~lig~~~g-yvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPG-YVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCC-Ccc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 2222332211 111 111223444444434569999999654
No 224
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0066 Score=68.04 Aligned_cols=162 Identities=15% Similarity=0.214 Sum_probs=95.2
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC----CeEEEEEeCCCCCHHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF----DKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
...+++||+++++++++.|....-.--.++|.+|+|||+++.-++.+.....-- +..++. .++ .
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~-------g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDL-------G 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecH-------H
Confidence 455678999999999999974332333578999999999998888876543211 111110 011 1
Q ss_pred HHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--------cccccCCCCccccccccCCCCeEEEEeccc
Q 005834 233 SDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--------FDEVGIPSGDVKKERMDDQRRCTIILTSRR 304 (675)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~ 304 (675)
. +-....-....+++...+.+.+...++..|++|.+.+.-- .+.-...-|. +..+.--.|-.||-+
T Consensus 236 ~-LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa-----LARGeL~~IGATT~~ 309 (786)
T COG0542 236 S-LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA-----LARGELRCIGATTLD 309 (786)
T ss_pred H-HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH-----HhcCCeEEEEeccHH
Confidence 1 1111111345677888888888765689999999865421 1111111111 112222334455544
Q ss_pred hhH--H---hhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 305 QDL--L---RNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 305 ~~v--a---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
+.- . .........+.+...+.+++..+++...
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 322 0 1123456789999999999999987654
No 225
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00014 Score=70.31 Aligned_cols=151 Identities=22% Similarity=0.229 Sum_probs=99.1
Q ss_pred CCCeEEecCCCCCcc--CCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCC-CCC--CccccccccCC
Q 005834 520 EGPIAISLPYRGIQV--LPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIH-FSS--LPSSLGRLINL 593 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~L~~L 593 (675)
.++.++.++...++. +... ..|.+|+.|.+.+.... .++... +..-..|+.|++++++ +++ +---+.+++.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld-D~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD-DPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC-cHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 346677666655532 1111 26788888888544321 122222 4566789999999876 342 22236789999
Q ss_pred CEEEeccccCCCc------ccccCCCCCcEEEeeCC--CC--CccchhhcCCCCCCEecCcCcccCcccchhhhhccCCc
Q 005834 594 QTLCLEYCRLKDI------VIVGQLKKLEILSFRGS--DI--ERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLH 663 (675)
Q Consensus 594 ~~L~l~~~~l~~~------~~i~~l~~L~~L~l~~~--~i--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~ 663 (675)
..|+|++|.+..+ ..++ .+|..|+|+|| ++ ..+..-..++++|.+||++.|..++.=-...+. +++.
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~ 339 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNY 339 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcch
Confidence 9999999986652 2343 46888999988 22 234444678999999999998766541112233 6999
Q ss_pred cCEEeCcCCCCC
Q 005834 664 LEVFGMAASRRV 675 (675)
Q Consensus 664 L~~L~l~~c~~i 675 (675)
|++|.++.|-.|
T Consensus 340 L~~lSlsRCY~i 351 (419)
T KOG2120|consen 340 LQHLSLSRCYDI 351 (419)
T ss_pred heeeehhhhcCC
Confidence 999999999754
No 226
>PRK06526 transposase; Provisional
Probab=96.72 E-value=0.042 Score=54.37 Aligned_cols=74 Identities=19% Similarity=0.149 Sum_probs=43.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE 259 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 259 (675)
..-+.++|.+|+|||+||..+.+....++ + .+.|+ +..+++..+..... ... .......+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~-----~~~----~~~~l~~l~-- 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH-----AGR----LQAELVKLG-- 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh-----cCc----HHHHHHHhc--
Confidence 45689999999999999999988765431 2 23333 33445555543221 111 111222332
Q ss_pred CeEEEEecCcccc
Q 005834 260 ERHLIILDNIWGE 272 (675)
Q Consensus 260 k~~LlVlDdv~~~ 272 (675)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 3469999999543
No 227
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.69 E-value=0.0075 Score=61.56 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED----KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 246 (675)
-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....++++++. ++++.++.+.+. ..+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4688999999999999999877543211 112468999999989888875 467777654321 11222
Q ss_pred H---HHHHHHHHHhccCeEEEEecCcc
Q 005834 247 D---RANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 247 ~---~~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
. ....+...+...+--|+|+|.+.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 2 22333444444455689999884
No 228
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00079 Score=64.46 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=66.5
Q ss_pred cccccCCCEEEeccccCCCcccccCCCCCcEEEeeCC--CCC-ccchhhcCCCCCCEecCcCccc--CcccchhhhhccC
Q 005834 587 LGRLINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGS--DIE-RLPLEFGQLTRLQLLDLSNCRR--LEVITPNVICQSW 661 (675)
Q Consensus 587 i~~L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~--l~~lp~~~~~~~L 661 (675)
...+..|+.|.+.++.++...++..|++|++|.++.| .+. .++-...++++|++|++++|.. ++++++ .. .+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~-~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LK-EL 115 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hh-hh
Confidence 3456678888888888888888999999999999999 443 6666667779999999999872 334443 23 58
Q ss_pred CccCEEeCcCCCC
Q 005834 662 LHLEVFGMAASRR 674 (675)
Q Consensus 662 ~~L~~L~l~~c~~ 674 (675)
.+|..|++..|+.
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 8899999999974
No 229
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.68 E-value=0.11 Score=53.86 Aligned_cols=42 Identities=29% Similarity=0.548 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 166 KVFQDVLEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 166 ~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
...+.+.+.+.+ +...+|+|.|.=|+||||+.+.+.+.....
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344556666653 567899999999999999999999988765
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.62 E-value=0.057 Score=53.97 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 165 KKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 165 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
.+.++++..++..+ .-|.+.|.+|+|||++|+.+.+... ....++++....+..+++.
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhh
Confidence 34455566665543 3566899999999999999987442 2345666666665555543
No 231
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.61 E-value=0.11 Score=55.57 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=51.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcccC---cCHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFELN---ESIFDRANRLCR 254 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 254 (675)
.+.+|.++|.+|+||||+|..++.....++ + .+..|+... .+...+.+..++..++.+.... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 467999999999999999999998877432 2 344444322 1123455666777777654321 122233333333
Q ss_pred HHhccCeEEEEecCc
Q 005834 255 VLKNEERHLIILDNI 269 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv 269 (675)
.+.. . -++|+|..
T Consensus 172 ~~~~-~-DvVIIDTA 184 (437)
T PRK00771 172 KFKK-A-DVIIVDTA 184 (437)
T ss_pred Hhhc-C-CEEEEECC
Confidence 3332 2 56777776
No 232
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.018 Score=59.73 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHHhc-cCCccE-EEEEcCCCCcHHHHHHHHHHHhhccC-------------------CCCeEEEEEeC
Q 005834 161 FDSRKKVFQDVLEALK-DDKLNI-IGVYGMGGVGKTTLVKQVAKQVTEDK-------------------LFDKVAMAEVT 219 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 219 (675)
++|-+....++..+.. .++.+. +.++|++|+||||+|..+.+...-.. ....+..+..+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566677777777776 344555 99999999999999999999876322 12344555555
Q ss_pred CCCC---HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccccCCCCccccccccCCC
Q 005834 220 ENPD---HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVGIPSGDVKKERMDDQR 294 (675)
Q Consensus 220 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~~~~~ 294 (675)
.... ..+..+++.+....... .++.-++++|+++.... -+.+...... -..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe-------p~~ 138 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE-------PPK 138 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc-------CCC
Confidence 4443 34444444444433221 14567899999976532 2222212211 345
Q ss_pred CeEEEEeccc-hhHHhhhcCCcceEecCCCC
Q 005834 295 RCTIILTSRR-QDLLRNVMNSQKEIQIDALS 324 (675)
Q Consensus 295 ~s~ilvTtR~-~~va~~~~~~~~~~~l~~L~ 324 (675)
.+.+|++|.. ..+..........+++.+.+
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CeEEEEEcCChhhccchhhhcceeeecCCch
Confidence 6677777663 33333233444567776633
No 233
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.021 Score=55.64 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=92.1
Q ss_pred ccccHHHHHHHHHHHhc---------c---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHH
Q 005834 160 AFDSRKKVFQDVLEALK---------D---DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~---------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 227 (675)
++-|-+...+.|.+... . ...+-|.++|++|.||+.||++|+...... |.+||.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----HH
Confidence 44566666666665533 1 124678999999999999999999877632 3444432 11
Q ss_pred HHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc---------ccccccCCCCccccccccCCCCeEE
Q 005834 228 QDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL---------KFDEVGIPSGDVKKERMDDQRRCTI 298 (675)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~i 298 (675)
.. +.+| ..+.++..|.+--+..|+-.|++|.++..- .-+.+...|--..+-.-.+..|.-|
T Consensus 203 vS---KWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 VS---KWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HH---HHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 11 1122 234466666666666799999999986431 1111111100000000013445555
Q ss_pred EEeccchhHHhhhcC--CcceEecCCCCHHHHH-HHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 299 ILTSRRQDLLRNVMN--SQKEIQIDALSKEEAL-HLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 299 lvTtR~~~va~~~~~--~~~~~~l~~L~~~e~~-~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
+-.|...-+...... -...|.+ ||++..|. .+|+-+.++.. ..-.+...+++.++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCCC
Confidence 556655444322221 1223333 45555554 45666665432 222334456666777664
No 234
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.58 E-value=0.011 Score=58.54 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=58.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCHH----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF-DKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESIF---- 246 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~---- 246 (675)
+-+.++|+|.+|+|||||++.+++....+ | +.++++-+.+.. ...++.+++...-..+. ..+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 44678999999999999999999988754 4 456777777665 44566666654321110 0011111
Q ss_pred --HHHHHHHHHHh-c-cCeEEEEecCccc
Q 005834 247 --DRANRLCRVLK-N-EERHLIILDNIWG 271 (675)
Q Consensus 247 --~~~~~l~~~l~-~-~k~~LlVlDdv~~ 271 (675)
...-.+.+++. + ++..|+++||+..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 12234556664 2 6899999999843
No 235
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0065 Score=56.75 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMA 216 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 216 (675)
...+|.+.|+.|+||||+|+.+++..... +..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45699999999999999999999988643 5555555
No 236
>PRK06696 uridine kinase; Validated
Probab=96.56 E-value=0.0037 Score=60.91 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 163 SRKKVFQDVLEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 163 gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.|++.+++|.+.+. .+...+|+|.|.+|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777778877774 456789999999999999999999998754
No 237
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.54 E-value=0.01 Score=58.02 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=35.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 227 (675)
-.++.|+|.+|+|||++|.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4699999999999999999998876543 4678899887 5555443
No 238
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.53 E-value=0.0069 Score=55.28 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.-..+.++|.+|.|||||.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3468999999999999999999998764
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.015 Score=57.50 Aligned_cols=88 Identities=25% Similarity=0.342 Sum_probs=55.4
Q ss_pred HHHHHHHH---HHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q 005834 164 RKKVFQDV---LEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE 240 (675)
Q Consensus 164 r~~~~~~l---~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (675)
+.+.+..+ .+++. +..-+.++|.+|+|||.||.++.+... +..+ .+.+++ ..+++.++.......
T Consensus 88 ~~~~l~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~-- 155 (254)
T COG1484 88 DKKALEDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG-- 155 (254)
T ss_pred hHHHHHHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC--
Confidence 44444443 34443 567789999999999999999999988 4323 345554 345666666554321
Q ss_pred cCcCHHHHHHHHHHHHhccCeEEEEecCccc
Q 005834 241 LNESIFDRANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
....++.+.+. +-=||||||+-.
T Consensus 156 ------~~~~~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 156 ------RLEEKLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred ------chHHHHHHHhh--cCCEEEEecccC
Confidence 12234444443 345999999954
No 240
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.53 E-value=0.021 Score=55.93 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccC
Q 005834 165 KKVFQDVLEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELN 242 (675)
Q Consensus 165 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 242 (675)
...+..+.++..+ .....+.++|.+|+|||+||..+++....+ -..+++++ ..+++..+-...... .
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~~---~ 150 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSNS---E 150 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhhc---c
Confidence 3344455544432 234578999999999999999999988654 23456664 345555554433210 1
Q ss_pred cCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 243 ESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 243 ~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
.. ...+.+.+. +.=+||+||+...
T Consensus 151 ~~----~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 TS----EEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cc----HHHHHHHhc--cCCEEEEeCCCCC
Confidence 11 223444454 3458899999544
No 241
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0085 Score=62.93 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=59.5
Q ss_pred ccccccHH---HHHHHHHHHhccC--------C-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHH
Q 005834 158 YEAFDSRK---KVFQDVLEALKDD--------K-LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQ 225 (675)
Q Consensus 158 ~~~~~gr~---~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 225 (675)
+.++.|-+ .|+++|+++|.++ + ++=|.++|++|.|||-||++++-...+- | |...+..|+.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE- 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDE- 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhh-
Confidence 44455544 5788899999753 2 4578899999999999999999887764 2 2222333321
Q ss_pred HHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 226 KIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+.-.. -..++..|...-+..-++.|++|.++..
T Consensus 376 -----m~VGv---------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 -----MFVGV---------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred -----hhhcc---------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 11111 1123444444444456899999998654
No 242
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00019 Score=68.75 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCcccccCCCCCcEEEeeCCCCCccch--hhcCCCCCCEecCc
Q 005834 567 TEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERLPL--EFGQLTRLQLLDLS 644 (675)
Q Consensus 567 l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~ 644 (675)
+.+.+.|++.||.+..+. -...++.|++|.|+-|+|+.+..+..+++|+.|+|+.|.|..+.. -+.+|++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 456677777787776542 245677788888888888887778888888888888887776654 46777788888888
Q ss_pred CcccCcccchh----hhhccCCccCEEe
Q 005834 645 NCRRLEVITPN----VICQSWLHLEVFG 668 (675)
Q Consensus 645 ~~~~l~~lp~~----~~~~~L~~L~~L~ 668 (675)
.|+....-+.+ ++. -|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR-~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLR-VLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHH-Hcccchhcc
Confidence 77766554432 344 577777775
No 243
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.50 E-value=0.015 Score=58.78 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=50.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
..+++.|+|.+|+||||++..++.....+..-..+..|+.... ....+-+....+.++.+.....+..+. ....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHcc
Confidence 3579999999999999999999887754311124555554321 122334444555666655423333333 33333443
Q ss_pred ccCeEEEEecCc
Q 005834 258 NEERHLIILDNI 269 (675)
Q Consensus 258 ~~k~~LlVlDdv 269 (675)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2347777753
No 244
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.50 E-value=0.014 Score=57.86 Aligned_cols=90 Identities=26% Similarity=0.310 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED----KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 246 (675)
..+.=|+|.+|+|||.|+.+++-..... +.=..++||+-...++..++. +|++..+.+.+. ..+..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4588999999999999998887654321 122469999999999887775 567766543210 11222
Q ss_pred ---HHHHHHHHHHhccCeEEEEecCcc
Q 005834 247 ---DRANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 247 ---~~~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
+....+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 233334444444456699999883
No 245
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.08 Score=57.57 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=83.9
Q ss_pred CccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
...++-|-++...++-+... -..++-|..+|++|.|||++|+.+++..... | +.++..
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp-- 502 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP-- 502 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH--
Confidence 34455556665555544432 1456789999999999999999999987754 4 333221
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc--ccCCCCcccccc---cc---CCCC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE--VGIPSGDVKKER---MD---DQRR 295 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~~~~~~~~~~~~---~~---~~~~ 295 (675)
+++.. . ....+..+..+.+.-++-.++++.||.++...--+. ....-..++..+ ++ ..++
T Consensus 503 --EL~sk----~------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 --ELFSK----Y------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred --HHHHH----h------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 11111 1 112223444444444444678999998855421110 000000000000 11 1222
Q ss_pred eEEEE-eccchhHHhhhcC---CcceEecCCCCHHHHHHHHHHHhCC
Q 005834 296 CTIIL-TSRRQDLLRNVMN---SQKEIQIDALSKEEALHLFQKIVGD 338 (675)
Q Consensus 296 s~ilv-TtR~~~va~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 338 (675)
.-||- |-|...+-...+. -...+.++.-+.+.-.++|+.++..
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 33333 3344333233444 3457777777777778899988864
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.017 Score=62.27 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=110.9
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|..+..++|.+.....|.+.+..++. .--...|.-|+||||+|+.++...--.+. ....++..-...++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 44566779999999999998875543 45567899999999999999886542210 11111122222222222
Q ss_pred HhCCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCcccc--cccccccCCCCccccccccCCCCeE-EEEec
Q 005834 234 DLGIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGE--LKFDEVGIPSGDVKKERMDDQRRCT-IILTS 302 (675)
Q Consensus 234 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~-ilvTt 302 (675)
.-..+. +. .....+..+.+.+... .++.=+.|+|.|.-. ..|+.+...+.. -..+.+ |+.||
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------PP~hV~FIlATT 157 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------PPSHVKFILATT 157 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-------CccCeEEEEecC
Confidence 100000 00 1112233344444433 234448899999654 345555444333 223444 44555
Q ss_pred cchhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 303 RRQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 303 R~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
-...+.....+....|.++.++.++-...+...+.... -....+...-|++..+|..
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~-I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG-INIEEDALSLIARAAEGSL 214 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHcCCCh
Confidence 55666666667788999999999988888888775322 2223455667777777754
No 247
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.034 Score=61.31 Aligned_cols=139 Identities=21% Similarity=0.205 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
..+.+.++|++|.|||.||+++++..... |-. +... +++.. . ....+.....+...-..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--fi~-----v~~~----~l~sk---~-------vGesek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--FIS-----VKGS----ELLSK---W-------VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--EEE-----eeCH----HHhcc---c-------cchHHHHHHHHHHHHHc
Confidence 45689999999999999999999966532 422 2111 11100 0 01112233333333333
Q ss_pred cCeEEEEecCcccccccccccC------CCCcccccc--ccCCCCeEEEEeccchhHHhhhc----CCcceEecCCCCHH
Q 005834 259 EERHLIILDNIWGELKFDEVGI------PSGDVKKER--MDDQRRCTIILTSRRQDLLRNVM----NSQKEIQIDALSKE 326 (675)
Q Consensus 259 ~k~~LlVlDdv~~~~~~~~~~~------~~~~~~~~~--~~~~~~s~ilvTtR~~~va~~~~----~~~~~~~l~~L~~~ 326 (675)
..++.|++|.++....+..-.. ....++... .....+..||-||-........+ .-...+.+++-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 5789999999976543332111 011111111 11333444454554433222111 22458889999999
Q ss_pred HHHHHHHHHhCC
Q 005834 327 EALHLFQKIVGD 338 (675)
Q Consensus 327 e~~~Lf~~~~~~ 338 (675)
+..+.|+.+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999998863
No 248
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.46 E-value=0.12 Score=54.85 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.+.+|.++|..|+||||++..++.....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999887764
No 249
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.46 E-value=0.019 Score=58.51 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHhcc----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 005834 163 SRKKVFQDVLEALKD----DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIK 238 (675)
Q Consensus 163 gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (675)
+|........+++.+ ...+-+.++|..|+|||.||..+++....+ . ..+.+++++ +++.++....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g-~~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-G-VSSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEHH------HHHHHHHHHHhc-
Confidence 555555555555542 234678999999999999999999998743 2 335566543 455555544421
Q ss_pred cccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 239 FELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
.+ .....+.+. +-=||||||+-..
T Consensus 206 ----~~----~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 206 ----GS----VKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred ----Cc----HHHHHHHhc--CCCEEEEecCCCc
Confidence 11 123333443 4579999999543
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.017 Score=60.11 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
..++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.+........+... ....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~-~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL-ALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH-HHHHhc-
Confidence 46999999999999999999998764331123455665332 224456667777778876543333233332 333444
Q ss_pred cCeEEEEecCcc
Q 005834 259 EERHLIILDNIW 270 (675)
Q Consensus 259 ~k~~LlVlDdv~ 270 (675)
++-++++|..-
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34567789873
No 251
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.45 E-value=0.017 Score=52.78 Aligned_cols=40 Identities=35% Similarity=0.461 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
++.|+|.+|+||||++..+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4689999999999999999988764 245678888766543
No 252
>PRK04132 replication factor C small subunit; Provisional
Probab=96.43 E-value=0.058 Score=61.94 Aligned_cols=156 Identities=9% Similarity=0.045 Sum_probs=93.0
Q ss_pred CCCCcHHHHHHHHHHHhhccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEe
Q 005834 188 MGGVGKTTLVKQVAKQVTEDKLF-DKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIIL 266 (675)
Q Consensus 188 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVl 266 (675)
+.++||||+|..++++.-.. .+ ..++-++.|+......+. ++++.+....+ +...+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 77899999999999986322 13 346777888765555433 33322211000 00124579999
Q ss_pred cCccccc--ccccccCCCCccccccccCCCCeEEEEecc-chhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 005834 267 DNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSR-RQDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTS 343 (675)
Q Consensus 267 Ddv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR-~~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~ 343 (675)
|+++... ..+.+...+.. -...+++|++|. ...+.....+....+++.+++.++-...+...+.... -+
T Consensus 637 DEaD~Lt~~AQnALLk~lEe-------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~ 708 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LE 708 (846)
T ss_pred ECcccCCHHHHHHHHHHhhC-------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CC
Confidence 9997763 33333222211 223555555544 4444333345567999999999999888887764321 11
Q ss_pred CchHHHHHHHHHhCCChhHHHHHHH
Q 005834 344 AFQPIAHEIVGRCGELPVALITLAK 368 (675)
Q Consensus 344 ~l~~~~~~I~~~c~GlPLai~~~~~ 368 (675)
--.+....|++.++|.+-.+..+-.
T Consensus 709 i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 709 LTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1245788999999998855444433
No 253
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.42 E-value=0.0084 Score=65.40 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=54.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
.-++..+.|++|+||||||..++++.. | .++=|+.|+..+...+-+.|...+....-.. .+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 457899999999999999999998875 3 4677888888887777776665553322100 02
Q ss_pred cCeEEEEecCcccc
Q 005834 259 EERHLIILDNIWGE 272 (675)
Q Consensus 259 ~k~~LlVlDdv~~~ 272 (675)
.++.-||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 47788888988654
No 254
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00095 Score=64.79 Aligned_cols=87 Identities=21% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcccc-ccccCCCEEEeccccCCC---cccccCCCCC
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSL-GRLINLQTLCLEYCRLKD---IVIVGQLKKL 615 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~L~~L~~L~l~~~~l~~---~~~i~~l~~L 615 (675)
.++.++.|++.+|......--..++.+++.|++|+++.|.+.+.-+++ -.+++|++|-|.++.+.- -..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 466777777766654433333455778888888888888776433333 356788888888877543 3456677777
Q ss_pred cEEEeeCCCCC
Q 005834 616 EILSFRGSDIE 626 (675)
Q Consensus 616 ~~L~l~~~~i~ 626 (675)
+.|.++.|++.
T Consensus 149 telHmS~N~~r 159 (418)
T KOG2982|consen 149 TELHMSDNSLR 159 (418)
T ss_pred hhhhhccchhh
Confidence 77777766433
No 255
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.034 Score=57.54 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=49.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD--HQKIQDKLASDLGIKFELNESIFDRANRLCRVL 256 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 256 (675)
+.++|+++|.+|+||||++..++.....+ .+ .+..++.. .+. ..+-+...++.++.+.....+..+....+ +.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL-~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHH-HHH
Confidence 45799999999999999999998876533 12 34444432 232 23334445556665543223333333333 333
Q ss_pred hc-cCeEEEEecCc
Q 005834 257 KN-EERHLIILDNI 269 (675)
Q Consensus 257 ~~-~k~~LlVlDdv 269 (675)
.. .+.=++++|-.
T Consensus 316 k~~~~~DvVLIDTa 329 (436)
T PRK11889 316 KEEARVDYILIDTA 329 (436)
T ss_pred HhccCCCEEEEeCc
Confidence 32 12246777866
No 256
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.32 E-value=0.031 Score=54.98 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
.-.++.|.|.+|+|||++|.++......+ -..++|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 34689999999999999999987664322 45788888765 455555543
No 257
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.77 Score=48.08 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=92.4
Q ss_pred HHHHHHHHHhccCC---------ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 005834 166 KVFQDVLEALKDDK---------LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLG 236 (675)
Q Consensus 166 ~~~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (675)
..++++.+++.... -|=-.++|++|.|||++..++++... ||..- +..+...
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~-------------- 272 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVK-------------- 272 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeecccc--------------
Confidence 34555666554221 13356899999999999999999987 65422 1111111
Q ss_pred CCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc--------c-----cCCCCccccc---cccCCCCeE-EE
Q 005834 237 IKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE--------V-----GIPSGDVKKE---RMDDQRRCT-II 299 (675)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--------~-----~~~~~~~~~~---~~~~~~~s~-il 299 (675)
...+ .++|...- ..+-+||+.|++-.-+... . ...+..+++. +++...+=| |+
T Consensus 273 -------~n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIiv 342 (457)
T KOG0743|consen 273 -------LDSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIV 342 (457)
T ss_pred -------CcHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEE
Confidence 1111 23332222 2467788888754311110 0 0111111111 112222334 45
Q ss_pred EeccchhHHh-hhcC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHH-hcC
Q 005834 300 LTSRRQDLLR-NVMN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKAL-KNM 373 (675)
Q Consensus 300 vTtR~~~va~-~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L-~~~ 373 (675)
.||-..+-.. ..+. -...+.+.--+++....||.++.+...+++ ++.+|.+...|.-+.=..++..| .++
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 6666554331 1222 234788999999999999999987543333 55666666666655444444444 444
No 258
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.016 Score=59.61 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=29.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV 218 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 218 (675)
..-+.++|..|+|||.||..+++....+ -..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH
Confidence 3779999999999999999999988754 235666654
No 259
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.30 E-value=0.021 Score=58.88 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc----cCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE----DKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 246 (675)
-+++-|+|.+|+|||+|+.+++-.... ...-..++||+....|++.++.. +++.++.+.+. ..+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 468889999999999999988644321 11224789999999999888654 66777654321 11222
Q ss_pred HH---HHHHHHHHhccCeEEEEecCcc
Q 005834 247 DR---ANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 247 ~~---~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
.. ...+...+...+--|||+|.+-
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 22 2233333433345688999874
No 260
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.29 E-value=0.054 Score=63.37 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=58.3
Q ss_pred ccccHHHHHHHHHHHhcc-------CC--ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKD-------DK--LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.+..++.+...+.. .+ ..++.++|+.|+|||++|+.+++..... -...+.+.++.-.. . ..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~---~~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-K---HS 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-h---hh
Confidence 467988888888777651 11 2478899999999999999999866422 12334454443211 1 11
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+.+.+|.+.. .... +....+.+.+.....-+|+||++...
T Consensus 643 ~~~LiG~~pg-y~g~-~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAPPG-YVGY-EEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCCCc-cccc-chhHHHHHHHHhCCCCeEEEeehhhC
Confidence 2222333221 1111 11122334443323469999999644
No 261
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.25 E-value=0.045 Score=56.57 Aligned_cols=99 Identities=25% Similarity=0.309 Sum_probs=57.4
Q ss_pred HHHHHHHHhccC----CccEEEEEcCCCCcHH-HHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCcc
Q 005834 167 VFQDVLEALKDD----KLNIIGVYGMGGVGKT-TLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKFE 240 (675)
Q Consensus 167 ~~~~l~~~L~~~----~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~ 240 (675)
....+..++.++ +.++|.+||+.|+||| |||+..+...... .=..+..|+...- ....+-++..++-++.+..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 344455555443 4789999999999995 5666665555221 1234666665321 2345556677888888876
Q ss_pred cCcCHHHHHHHHHHHHhccCeEEEEecCc
Q 005834 241 LNESIFDRANRLCRVLKNEERHLIILDNI 269 (675)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv 269 (675)
...+..+....+. .+.+ .=+|.+|-+
T Consensus 265 vv~~~~el~~ai~-~l~~--~d~ILVDTa 290 (407)
T COG1419 265 VVYSPKELAEAIE-ALRD--CDVILVDTA 290 (407)
T ss_pred EecCHHHHHHHHH-Hhhc--CCEEEEeCC
Confidence 5555555544443 3332 235555655
No 262
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.24 E-value=0.05 Score=61.62 Aligned_cols=156 Identities=14% Similarity=0.184 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
+-|.++|++|.|||++|+.+++..... | +.++.++ +.. +. .+. . ......+........
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g~------~-~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VGV------G-ASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hcc------c-HHHHHHHHHHHHhcC
Confidence 458999999999999999998876532 3 2222211 111 00 010 0 112222333333346
Q ss_pred eEEEEecCcccccccccc--cCCC---Ccccccc------ccCCCCeEEEEeccchhHHhhhc----CCcceEecCCCCH
Q 005834 261 RHLIILDNIWGELKFDEV--GIPS---GDVKKER------MDDQRRCTIILTSRRQDLLRNVM----NSQKEIQIDALSK 325 (675)
Q Consensus 261 ~~LlVlDdv~~~~~~~~~--~~~~---~~~~~~~------~~~~~~s~ilvTtR~~~va~~~~----~~~~~~~l~~L~~ 325 (675)
+++|++|+++....-..- .... ...++.+ +....+.-||.||...+...... .-...+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 799999999654110000 0000 0000111 11234455566776554332111 1245788888888
Q ss_pred HHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 326 EEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 326 ~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
++-.++++.+.......++.. ...+++.+.|.
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 888888888775332222211 33466666663
No 263
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.091 Score=56.50 Aligned_cols=154 Identities=17% Similarity=0.289 Sum_probs=88.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
.+.=|.++|++|.|||-||++|+|..... | ++|-.. +++.... ...+..+..++++-+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N--F-----isVKGP----ELlNkYV----------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN--F-----ISVKGP----ELLNKYV----------GESERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc--e-----EeecCH----HHHHHHh----------hhHHHHHHHHHHHhhc
Confidence 35568899999999999999999998755 4 444332 2222111 1223445566666666
Q ss_pred cCeEEEEecCccccc-------cc------ccccCCCCccccccccCCCCeEEEEeccchhHH-hhhcCC---cceEecC
Q 005834 259 EERHLIILDNIWGEL-------KF------DEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL-RNVMNS---QKEIQID 321 (675)
Q Consensus 259 ~k~~LlVlDdv~~~~-------~~------~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va-~~~~~~---~~~~~l~ 321 (675)
.-+++|+||.++... .| +.+...+.. +....|.-||-.|...++. .....+ .....+.
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG-----l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~ 677 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG-----LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVG 677 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc-----cccccceEEEeecCCCcccchhhcCCCccCceeeec
Confidence 789999999986531 11 111111110 1134566666656544443 222222 3477778
Q ss_pred CCCHHHHHHHHHHHhCCC--C--CCCCchHHHHHHHHHhCCCh
Q 005834 322 ALSKEEALHLFQKIVGDS--M--KTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 322 ~L~~~e~~~Lf~~~~~~~--~--~~~~l~~~~~~I~~~c~GlP 360 (675)
.-+.+|-..+++....+. . .+.++.++++. .+|.|..
T Consensus 678 lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 678 LPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888889999998887632 1 23344444432 3555654
No 264
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.22 E-value=0.061 Score=63.15 Aligned_cols=105 Identities=17% Similarity=0.281 Sum_probs=60.1
Q ss_pred ccccHHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKD-------D--KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+....... -...+.+..+.-.....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----
Confidence 467999999998888752 1 13568899999999999999999876422 22344455544222111
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
..+.+|.+.. .... +....+.+.+......+|+||++...
T Consensus 640 ~~~l~g~~~g-~~g~-~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 VARLIGAPPG-YVGY-EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred HHHhcCCCCC-ccCc-ccccHHHHHHHcCCCcEEEEeccccC
Confidence 1122232221 1110 01123344444333458999999654
No 265
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.21 E-value=0.019 Score=59.20 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=57.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED----KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 246 (675)
..++-|+|.+|+|||+|+..++-..... ..-..++||+....|+++++ .+|++.++.+... ..+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 4688899999999999999887543311 11236999999999988876 4667777654321 11222
Q ss_pred HH---HHHHHHHHhccCeEEEEecCcc
Q 005834 247 DR---ANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 247 ~~---~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
.. ...+...+...+.-|||+|-+-
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 22 2222223333456688888874
No 266
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.20 E-value=0.033 Score=57.39 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=42.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL----FDKVAMAEVTENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (675)
...++-|+|.+|+|||+++.+++........ =..++||+....+++.++. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 3578899999999999999999876432211 1479999999888887765 44555554
No 267
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.18 E-value=0.05 Score=51.68 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=54.5
Q ss_pred cccccHHHHHHHHHHH----hccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEA----LKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~----L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
...+|-+...+.+++. +......-|.++|.-|.|||+|++++.+....+ .-. -|.|++
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k-------------- 121 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDK-------------- 121 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcH--------------
Confidence 3456766665555543 334445678999999999999999999988754 211 222222
Q ss_pred hCCCcccCcCHHHHHHHHHHHHhc-cCeEEEEecCcccc
Q 005834 235 LGIKFELNESIFDRANRLCRVLKN-EERHLIILDNIWGE 272 (675)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~ 272 (675)
++......+.+.|+. ++||.|..||+.=+
T Consensus 122 ---------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe 151 (287)
T COG2607 122 ---------EDLATLPDLVELLRARPEKFILFCDDLSFE 151 (287)
T ss_pred ---------HHHhhHHHHHHHHhcCCceEEEEecCCCCC
Confidence 111223344444442 57899999999544
No 268
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.17 E-value=0.021 Score=58.44 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=55.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc---c-CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE---D-KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 246 (675)
..++.|+|.+|+|||||+..++..... . ..-..++|++....++..+ +.++++.++..... ..+.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCChH
Confidence 578999999999999999998764321 1 1123679999988888776 44556666543220 11122
Q ss_pred HH---HHHHHHHHhccCeEEEEecCcc
Q 005834 247 DR---ANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 247 ~~---~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
+. ...+...+...+.-|+|+|.+-
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcH
Confidence 22 2223333333455688888874
No 269
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.15 E-value=0.032 Score=56.62 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-----CcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-----NESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (675)
-+++-|+|..|+||||||..+....... -..++||.....+++. .++.+|.+.+. +...++....+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999998876543 4568999998876653 45666665431 2334444444444
Q ss_pred HHhccCeEEEEecCcccc
Q 005834 255 VLKNEERHLIILDNIWGE 272 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~~ 272 (675)
.++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 556555568999988543
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.13 E-value=0.0077 Score=53.40 Aligned_cols=28 Identities=43% Similarity=0.517 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDK 208 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 208 (675)
--|.|.|++|+||||+++.+.+..+.++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999888653
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.13 E-value=0.0068 Score=65.38 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=41.8
Q ss_pred cccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 159 EAFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.+++|-++.+++|++.|. +...+++.++|++|+||||||+.+++-...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 357799999999999883 556689999999999999999999997764
No 272
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.13 E-value=0.037 Score=54.09 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=26.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
+...+|+|.|..|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567799999999999999999999887753
No 273
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.12 E-value=0.037 Score=56.88 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=42.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDK----LFDKVAMAEVTENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (675)
..++-|+|.+|+||||++.+++....... .=..++||+....++..++. ++++.++.
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 57889999999999999999987654210 11379999999888887754 45555554
No 274
>PTZ00494 tuzin-like protein; Provisional
Probab=96.10 E-value=2.1 Score=44.92 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=97.0
Q ss_pred ccCccccccHHHHHHHHHHHhc---cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK---DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
+.....++.|+++-..+.+.|. ...++++.+.|.-|.||++|.+........ ..++|.+... ++-++.|
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHH
Confidence 3445567888887655555554 567899999999999999999998887764 3567777665 4456788
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHH------hccCeEEEEecCcccccc----cccccCCCCccccccccCCCCeEEEEe
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVL------KNEERHLIILDNIWGELK----FDEVGIPSGDVKKERMDDQRRCTIILT 301 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l------~~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilvT 301 (675)
.+.++.+.-..- .+.++-+.+.. .+++.-+||+-== +-.. +++. ..+.. ...-|.|++-
T Consensus 439 VKALgV~nve~C--GDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~-vaLac-------DrRlCHvv~E 507 (664)
T PTZ00494 439 VRALGVSNVEVC--GDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEV-VSLVS-------DCQACHIVLA 507 (664)
T ss_pred HHHhCCCChhhh--ccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHH-HHHHc-------cchhheeeee
Confidence 999988754211 11222222211 2234455555311 1111 1111 01111 4455667665
Q ss_pred ccchhHH--hhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 302 SRRQDLL--RNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 302 tR~~~va--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
.-.+.+. ....+.-..|.+++++.++|.++-.+..
T Consensus 508 VplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 508 VPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred chHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 4443321 2233455689999999999988876653
No 275
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.19 Score=51.69 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=36.1
Q ss_pred CeEEEEeccc-hhHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 295 RCTIILTSRR-QDLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 295 ~s~ilvTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
++.+|++|.+ ..+..........+.+.+++.++..+.+.+.. .+. . . ..+..++|-|+.
T Consensus 143 ~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~-~--~-~~l~~~~g~p~~ 202 (325)
T PRK08699 143 QVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAE-P--E-ERLAFHSGAPLF 202 (325)
T ss_pred CCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCc-H--H-HHHHHhCCChhh
Confidence 4545666655 44444444556789999999999988886541 111 1 1 123568898854
No 276
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.07 E-value=0.28 Score=47.73 Aligned_cols=208 Identities=10% Similarity=0.173 Sum_probs=114.4
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhc----cCCCCeEEEEEeCCC----------C---
Q 005834 160 AFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTE----DKLFDKVAMAEVTEN----------P--- 222 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~----------~--- 222 (675)
...++++....+......++.+...++|+.|.||-|.+..+.++.-. +-.-+...|.+-|.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 45577777777777666677899999999999999998888776532 112334455544332 1
Q ss_pred --------CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeE-EEEecCcccc--cccccccCCCCcccccccc
Q 005834 223 --------DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERH-LIILDNIWGE--LKFDEVGIPSGDVKKERMD 291 (675)
Q Consensus 223 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~ 291 (675)
.-+-+..+|++...-..+ +. ....+.| ++|+-.+++. +.-..+......
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q-----------ie--~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk------- 153 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ-----------IE--TQGQRPFKVVVINEADELTRDAQHALRRTMEK------- 153 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc-----------hh--hccccceEEEEEechHhhhHHHHHHHHHHHHH-------
Confidence 112233344433322111 00 0012344 3444443322 111111111111
Q ss_pred CCCCeEEEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCC-CCCCchHHHHHHHHHhCCChhHHHHHHHH
Q 005834 292 DQRRCTIILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSM-KTSAFQPIAHEIVGRCGELPVALITLAKA 369 (675)
Q Consensus 292 ~~~~s~ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 369 (675)
-...+|+|+..-+- .+....-...-.++++..+++|-...+++.+.... .-| ++++.+|+++++|.---+..+-..
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 23456666543221 11111223344789999999999999998876322 222 679999999999976444444444
Q ss_pred Hh--c---------CChHHHHHHHHHHhhcc
Q 005834 370 LK--N---------MSLETWKYVLRQLRSSY 389 (675)
Q Consensus 370 L~--~---------~~~~~w~~~l~~l~~~~ 389 (675)
.+ + ....+|+-++.++....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 43 1 14568999888865443
No 277
>PTZ00035 Rad51 protein; Provisional
Probab=96.07 E-value=0.037 Score=57.23 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=55.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc----cCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---------CcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE----DKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---------NESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 246 (675)
-.++.|+|.+|+|||||+..++-.... ...=..++|++....+++++ +.++++.++..... ..+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 468999999999999999988755431 11123577999888888777 44556666553210 11222
Q ss_pred HHHH---HHHHHHhccCeEEEEecCcc
Q 005834 247 DRAN---RLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 247 ~~~~---~l~~~l~~~k~~LlVlDdv~ 270 (675)
+... .+...+...+--|||+|.+.
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcH
Confidence 2222 23333434455689999884
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.02 E-value=0.026 Score=54.71 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
-.++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 5689999999999999999998876532 34678887655543
No 279
>PRK06547 hypothetical protein; Provisional
Probab=96.02 E-value=0.0099 Score=55.02 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 170 DVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 170 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+...+......+|+|.|.+|+||||+|+.+.+...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566788999999999999999999988754
No 280
>PRK10536 hypothetical protein; Provisional
Probab=95.98 E-value=0.04 Score=53.80 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=41.8
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEE
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVA 214 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 214 (675)
+...+.+|......++.++.+. .+|.+.|.+|.|||+||..+..+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3445667888888888888653 5999999999999999999988643223455443
No 281
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.013 Score=52.09 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKF 239 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (675)
+|.|-|.+|+||||+|+.+.++..-. | .+...++++|++..|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999988632 1 134578899999988764
No 282
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.24 Score=47.17 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC
Q 005834 160 AFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN 221 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 221 (675)
.+-|-++.+++|.+.+. -.+++-+.++|++|.|||-||+.|+++.. +.|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsgs 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSGS 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEechH
Confidence 34456666666665543 13567788999999999999999987643 567777763
No 283
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.95 E-value=0.037 Score=51.46 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
++.++|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999877643
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.95 E-value=0.047 Score=53.31 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (675)
..++.|.|.+|+||||+|.+++.....++ ..+++++... +..++++.+ ..++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhCC
Confidence 45999999999999999877766553221 3456766333 456666665 34443
No 285
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.94 E-value=0.009 Score=53.79 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=28.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAE 217 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (675)
..+|.|.|.+|+||||||+.+.+..... -..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3589999999999999999999998765 34455554
No 286
>PRK10867 signal recognition particle protein; Provisional
Probab=95.94 E-value=0.076 Score=56.55 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.+.+|.++|.+|+||||.+..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4679999999999999998888876654
No 287
>PRK07667 uridine kinase; Provisional
Probab=95.90 E-value=0.012 Score=55.84 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=29.7
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 169 QDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 169 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+.|.+.+. ++...+|+|-|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555554 345579999999999999999999998763
No 288
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.063 Score=53.39 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=55.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH-hCC-CcccCcCHHHHH---HHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD-LGI-KFELNESIFDRA---NRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~-~~~~~~~~~~~~---~~l~ 253 (675)
.-+++=|+|+.|.||||+|.+++-..... -..++||+....++++.+.. ++.. +.. -...+.+.++.. ..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 34688999999999999999987766543 44889999999999877543 3333 211 111122222222 2222
Q ss_pred HHHhccCeEEEEecCcc
Q 005834 254 RVLKNEERHLIILDNIW 270 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~ 270 (675)
....+ +--|+|+|.+-
T Consensus 136 ~~~~~-~i~LvVVDSva 151 (279)
T COG0468 136 RSGAE-KIDLLVVDSVA 151 (279)
T ss_pred HhccC-CCCEEEEecCc
Confidence 22222 35699999883
No 289
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.89 E-value=0.056 Score=53.07 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=55.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-----------------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL----------------- 241 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------- 241 (675)
...++.|+|.+|+|||+||.++......+ =..++|++..+. +.++.+.+ .+++.+...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35789999999999999999997654322 357889988654 45555553 334322110
Q ss_pred ---CcCHHHHHHHHHHHHhccCeEEEEecCcc
Q 005834 242 ---NESIFDRANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 242 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
.....+....+.+.+...+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 11224455566666654456689999875
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.88 E-value=0.086 Score=56.10 Aligned_cols=88 Identities=20% Similarity=0.220 Sum_probs=47.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCccc---CcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD--HQKIQDKLASDLGIKFEL---NESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 253 (675)
.+.++.++|.+|+||||.|..++.....+..+ .+.-|+.. .+. ..+-+...+...+.+.-. ..+..+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D-~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACD-LYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecc-ccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46799999999999999999988876422112 33334332 222 233344455555554321 122333333333
Q ss_pred HHHhccCeE-EEEecCc
Q 005834 254 RVLKNEERH-LIILDNI 269 (675)
Q Consensus 254 ~~l~~~k~~-LlVlDdv 269 (675)
+.... +.| ++|+|-.
T Consensus 176 ~~~~~-~~~DvVIIDTa 191 (428)
T TIGR00959 176 EYAKE-NGFDVVIVDTA 191 (428)
T ss_pred HHHHh-cCCCEEEEeCC
Confidence 33332 234 6666765
No 291
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.87 E-value=0.047 Score=53.96 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=61.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc--cCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCH----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE--DKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESI---- 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~---- 245 (675)
+-+.++|.|-.|+|||+|+.++.+.... +.+-+.++++-+.+.. ...++..++...=..+.. ...+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999999887641 2234778888888765 456677666553222110 01111
Q ss_pred --HHHHHHHHHHHhc--cCeEEEEecCcccc
Q 005834 246 --FDRANRLCRVLKN--EERHLIILDNIWGE 272 (675)
Q Consensus 246 --~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 272 (675)
.-....+.+++.. +++.|+++||+...
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1123346677663 58999999998543
No 292
>PRK04328 hypothetical protein; Provisional
Probab=95.86 E-value=0.038 Score=54.71 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=32.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN 221 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 221 (675)
.-.++.|.|.+|.|||+||.++......+ -..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 35789999999999999999987764322 456888887663
No 293
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0033 Score=36.01 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=14.0
Q ss_pred CCcEEEeeCCCCCccchhhcC
Q 005834 614 KLEILSFRGSDIERLPLEFGQ 634 (675)
Q Consensus 614 ~L~~L~l~~~~i~~lp~~i~~ 634 (675)
+|++|+|++|+++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777766554
No 294
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.028 Score=58.89 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=46.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP--DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
..++.++|.+|+||||++..++........+ .+..++. +.+ ...+.+...++.++.+..... ....+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~~~----~~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYPVK----DIKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeeehH----HHHHHHHHHH
Confidence 4689999999999999999998765322122 2333332 222 233444555566666443111 1233444443
Q ss_pred ccCeEEEEecCc
Q 005834 258 NEERHLIILDNI 269 (675)
Q Consensus 258 ~~k~~LlVlDdv 269 (675)
....=++|+|-.
T Consensus 297 ~~~~D~VLIDTa 308 (432)
T PRK12724 297 RDGSELILIDTA 308 (432)
T ss_pred hCCCCEEEEeCC
Confidence 323346888843
No 295
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.83 E-value=0.048 Score=54.31 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=31.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
.-+++.|.|.+|+|||++|.+++.....+ =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34689999999999999999987765432 34678888864
No 296
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.25 Score=55.79 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHHHhc-------c--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALK-------D--DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.++.++.+.+.+. + ....+...+|+.|||||-||+.++...-... +..+-+..|+-.. -..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~E----kHs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYME----KHS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHH----HHH
Confidence 35799999999888875 2 2345777899999999999999998763211 3344444433211 123
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeE-EEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERH-LIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~-LlVlDdv~~~ 272 (675)
+.+.+|.++. -...++ .-.|-+..++ ++| +|.||.+...
T Consensus 566 VSrLIGaPPG-YVGyee-GG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPG-YVGYEE-GGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCC-Cceecc-ccchhHhhhc-CCCeEEEechhhhc
Confidence 3444555443 111111 3344455554 666 7788998654
No 297
>PRK06921 hypothetical protein; Provisional
Probab=95.82 E-value=0.043 Score=54.75 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=44.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
...-+.++|..|+|||.||..+++....+. -..+++++. .+++..+...+ +......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~-----------~~~~~~~~~~~- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF-----------DLLEAKLNRMK- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH-----------HHHHHHHHHhc-
Confidence 456799999999999999999999876431 234566654 23333332221 11122233343
Q ss_pred cCeEEEEecCc
Q 005834 259 EERHLIILDNI 269 (675)
Q Consensus 259 ~k~~LlVlDdv 269 (675)
+-=||||||+
T Consensus 177 -~~dlLiIDDl 186 (266)
T PRK06921 177 -KVEVLFIDDL 186 (266)
T ss_pred -CCCEEEEecc
Confidence 3469999999
No 298
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.82 E-value=0.0078 Score=52.70 Aligned_cols=22 Identities=45% Similarity=0.851 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (675)
|.|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 299
>PRK14974 cell division protein FtsY; Provisional
Probab=95.82 E-value=0.11 Score=53.58 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=50.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCcccC---cCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD--HQKIQDKLASDLGIKFELN---ESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 253 (675)
+..+|.++|++|+||||++..++...... .+ .++.+. .+.+. ..+-+...+..++.+.... .+.........
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999999888876643 23 333443 23332 3344566677777654211 12222222222
Q ss_pred HHHhccCeEEEEecCcc
Q 005834 254 RVLKNEERHLIILDNIW 270 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~ 270 (675)
+.......=++++|-.-
T Consensus 216 ~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 216 EHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHhCCCCEEEEECCC
Confidence 22222122388888874
No 300
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.058 Score=55.69 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
+.+++.++|+.|+||||++..++.....++ ..+.+++.... ....+-++..++.++.+.....+..+....+ +.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHH
Confidence 357999999999999999999988765432 34666665432 2235556667777776654333444443333 3333
Q ss_pred c-cCeEEEEecCcc
Q 005834 258 N-EERHLIILDNIW 270 (675)
Q Consensus 258 ~-~k~~LlVlDdv~ 270 (675)
. +..=++++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 234577778763
No 301
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.81 E-value=0.023 Score=66.49 Aligned_cols=106 Identities=16% Similarity=0.251 Sum_probs=59.3
Q ss_pred cccccHHHHHHHHHHHhc-------cCC--ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEALK-------DDK--LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~-------~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
..++|.+..++.+...+. +.+ ...+.++|+.|+|||+||+.+++..-.. -...+-+..++-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc---
Confidence 456799999988888775 111 2356789999999999999999875321 12334444443222111
Q ss_pred HHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 230 KLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+.+.+|.+.. -.. .+....+.+.+......+++||++...
T Consensus 584 -~~~l~g~~~g-yvg-~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 -VSKLIGSPPG-YVG-YNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHHhcCCCCc-ccC-cCccchHHHHHHhCCCeEEEECChhhC
Confidence 1112232211 000 011123445555433468999999654
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.095 Score=55.03 Aligned_cols=88 Identities=23% Similarity=0.250 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccC--CCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCcccCcCHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDK--LFDKVAMAEVTENPD--HQKIQDKLASDLGIKFELNESIFDRANRLCR 254 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 254 (675)
..++|.++|..|+||||.+..++....... .-..+..++.. .+. ..+-++..++.++.+........+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~- 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT- 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH-
Confidence 457999999999999999999988765321 12345555554 332 334466777777776543333333333332
Q ss_pred HHhccCeEEEEecCcc
Q 005834 255 VLKNEERHLIILDNIW 270 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~ 270 (675)
.+. +.-++++|..-
T Consensus 251 ~~~--~~DlVLIDTaG 264 (388)
T PRK12723 251 QSK--DFDLVLVDTIG 264 (388)
T ss_pred HhC--CCCEEEEcCCC
Confidence 232 34688889873
No 303
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.77 E-value=0.021 Score=50.86 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=32.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
|.++|.+|+|||+||+.+++.... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 679999999999999999998832 345577888888777654
No 304
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.77 E-value=0.022 Score=58.14 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
..+..++|+|++|.|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456789999999999999999999998753
No 305
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.69 E-value=0.011 Score=56.23 Aligned_cols=25 Identities=48% Similarity=0.755 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999998874
No 306
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.66 E-value=0.068 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+.+|+|.|..|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988766554
No 307
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.66 E-value=1.8 Score=45.37 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=39.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP--DHQKIQDKLASDLGIKF 239 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~ 239 (675)
.+.||-.+|.-|.||||.|-.+++..+.+ ....-+...+.+ ...+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~---~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK---GKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc---CCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 46799999999999999999999988852 222223233333 33455677777776653
No 308
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.65 E-value=0.059 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998875
No 309
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.64 E-value=0.073 Score=50.41 Aligned_cols=89 Identities=21% Similarity=0.256 Sum_probs=49.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCC--------CeEEEEEeCCCCCHHHHHHHHHHHhCCCc-------------
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLF--------DKVAMAEVTENPDHQKIQDKLASDLGIKF------------- 239 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------- 239 (675)
.++.|.|.+|+||||++..+.........| ..++|++.... ..++.+.+........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 588999999999999999999887754333 25788877665 3334343333222110
Q ss_pred ---------ccCcCHHHHHHHHHHHHhc-cCeEEEEecCccc
Q 005834 240 ---------ELNESIFDRANRLCRVLKN-EERHLIILDNIWG 271 (675)
Q Consensus 240 ---------~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~ 271 (675)
............+.+.+.. .+.-++|+|.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 0000112344556666664 4566899998744
No 310
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.62 E-value=0.019 Score=65.60 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=58.5
Q ss_pred ccccHHHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.++.++.+.+.+.. .....+.++|+.|+|||++|+.++..... ..+.+++++-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 357888888888887651 12357889999999999999999887731 22344444322111 1
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+.+.+|.+.. ... .+....+.+.+......+++||++...
T Consensus 530 ~~~LiG~~~g-yvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPG-YVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCC-ccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222333211 111 011122334444434569999999665
No 311
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.59 E-value=0.011 Score=45.33 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 312
>PRK09183 transposase/IS protein; Provisional
Probab=95.59 E-value=0.034 Score=55.30 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+.|+|.+|+|||+||..+++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999877553
No 313
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.59 E-value=0.014 Score=67.06 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=90.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh-hccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc---CcCHHHHHHHHH
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV-TEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL---NESIFDRANRLC 253 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 253 (675)
.+.+++.|.|+.|.||||+.+.+.-.. ..+. -.+|.+...... .++..+...++..... ..........+.
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNIS 394 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHH
Confidence 345799999999999999999987652 1110 011111110000 0011111111100000 000111111222
Q ss_pred HHHhc-cCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHHhhhcCCcce--EecCCCCHHHHHH
Q 005834 254 RVLKN-EERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQKE--IQIDALSKEEALH 330 (675)
Q Consensus 254 ~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~~~~~~~--~~l~~L~~~e~~~ 330 (675)
..+.. .++-|+++|..-...+...-......++..+ ...|+.+|+||....+.......... ..+. ++. +...
T Consensus 395 ~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~ 470 (771)
T TIGR01069 395 AILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS 470 (771)
T ss_pred HHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc
Confidence 22221 3679999999865432221100000011111 23578899999998764322211111 1111 111 1000
Q ss_pred HHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 005834 331 LFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQLRSS 388 (675)
Q Consensus 331 Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~ 388 (675)
|........ + -...|-.|++++ |+|-.+..-|..+.......++.+++.|...
T Consensus 471 -p~Ykl~~G~--~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 471 -PTYKLLKGI--P-GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSAL 523 (771)
T ss_pred -eEEEECCCC--C-CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 001110111 1 124577888877 8888888888888766666777777776543
No 314
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.56 E-value=0.012 Score=52.74 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987654
No 315
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.56 E-value=0.013 Score=56.56 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.56 E-value=0.098 Score=52.39 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=49.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH--HHHHHHHHHHhCCCcc---cCcCHHHH-HHH
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH--QKIQDKLASDLGIKFE---LNESIFDR-ANR 251 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~-~~~ 251 (675)
.+.+++.++|.+|+||||++..++...... -..+.+++.. .+.. .+-+...++..+.+.. ...+.... ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 346899999999999999999998877543 2345566543 2332 2334445555554421 11122222 223
Q ss_pred HHHHHhccCeEEEEecCc
Q 005834 252 LCRVLKNEERHLIILDNI 269 (675)
Q Consensus 252 l~~~l~~~k~~LlVlDdv 269 (675)
+.....+ ..=++++|-.
T Consensus 147 l~~~~~~-~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKAR-NIDVVLIDTA 163 (272)
T ss_pred HHHHHHC-CCCEEEEeCC
Confidence 3332322 3457788876
No 317
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.1 Score=57.73 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred cCccccccHHHHHHHHHHHhc---------cC---CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK---------DD---KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
....++-|-++.+.+|.+-+. .. +..=|.++|++|.|||-+|++|+....-. |++|-.+
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP-- 739 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP-- 739 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH--
Confidence 345567788888888888764 12 24568899999999999999999876532 4555432
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+++..-+ ...++-+..+.++-++.++|.|.||.+++.
T Consensus 740 --ELLNMYV----------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 --ELLNMYV----------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred --HHHHHHh----------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 2222211 122344556666666678999999999765
No 318
>PRK08233 hypothetical protein; Provisional
Probab=95.53 E-value=0.012 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|+|.|.+|+||||||+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 319
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.52 E-value=0.04 Score=57.68 Aligned_cols=87 Identities=26% Similarity=0.267 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccC-cCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELN-ESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~ 258 (675)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++ ..-++.++...+.- .........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999998876543 346788876543 3332 22345555433210 0001123344444444
Q ss_pred cCeEEEEecCccc
Q 005834 259 EERHLIILDNIWG 271 (675)
Q Consensus 259 ~k~~LlVlDdv~~ 271 (675)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 4677899999843
No 320
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.05 Score=58.16 Aligned_cols=87 Identities=23% Similarity=0.234 Sum_probs=49.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
.+++.++|++|+||||++..++........-..+..|+..... ...+-+....+.++.+.....+..+....+. .+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~-~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE-QLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH-HhC-
Confidence 3689999999999999999887766511112456666653211 1223344445556665542333333333332 232
Q ss_pred cCeEEEEecCc
Q 005834 259 EERHLIILDNI 269 (675)
Q Consensus 259 ~k~~LlVlDdv 269 (675)
..=++++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888865
No 321
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.50 E-value=0.058 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 322
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.056 Score=50.34 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+|.|+|.+|+||||+|+.+......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4569999999999999999999998764
No 323
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.47 E-value=0.063 Score=60.93 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (675)
-+++-|.|.+|+||||||.+++...... =..++|+...+.++. ..++.++.+.+ .....+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788999999999999998876654432 356899988887774 36777777543 12233444444455
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.+..++.-|+|+|.+..
T Consensus 133 lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 133 LIRSGALDIVVIDSVAA 149 (790)
T ss_pred HhhcCCCeEEEEcchhh
Confidence 45555677999999853
No 324
>PRK04296 thymidine kinase; Provisional
Probab=95.46 E-value=0.026 Score=53.39 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc--CcCHHHHHHHHHHHHhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL--NESIFDRANRLCRVLKN 258 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 258 (675)
.++.|+|..|.||||+|..+....... -..++.+. ..++.......+++.++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 477899999999999999998887643 23334342 1112222234456666654321 1223334444433 33
Q ss_pred cCeEEEEecCcccc--cccccccCCCCccccccccCCCCeEEEEeccchh
Q 005834 259 EERHLIILDNIWGE--LKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD 306 (675)
Q Consensus 259 ~k~~LlVlDdv~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (675)
++.-+||+|.+.-. ++..++...+ ...|..|++|.+...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---------~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---------DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---------HHcCCeEEEEecCcc
Confidence 34458999998322 1111111110 345778899988743
No 325
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.44 E-value=0.058 Score=57.67 Aligned_cols=92 Identities=22% Similarity=0.348 Sum_probs=60.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESI------ 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~------ 245 (675)
+-..++|+|.+|+|||||+.++.+....+ +-+.++++-+.+.. ...++..++...-.... ..+.+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 45689999999999999999998887643 56788888777654 45666666654322111 001111
Q ss_pred HHHHHHHHHHHhc--cCeEEEEecCccc
Q 005834 246 FDRANRLCRVLKN--EERHLIILDNIWG 271 (675)
Q Consensus 246 ~~~~~~l~~~l~~--~k~~LlVlDdv~~ 271 (675)
...+..+.+++.. +++.|+++||+-.
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223355667652 6899999999944
No 326
>PTZ00301 uridine kinase; Provisional
Probab=95.44 E-value=0.014 Score=55.84 Aligned_cols=26 Identities=27% Similarity=0.624 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 327
>PRK06762 hypothetical protein; Provisional
Probab=95.43 E-value=0.015 Score=53.79 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 328
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.43 E-value=0.056 Score=50.90 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
++.|.|.+|+|||+||.++....... =..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 36799999999999999987776532 24577887654 34444443
No 329
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.40 E-value=0.015 Score=55.96 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+|+|+|.+|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998765
No 330
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.40 E-value=0.19 Score=43.19 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHHhc-------cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 161 FDSRKKVFQDVLEALK-------DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
++|..-..+.+++.+. ..++-|++.+|.+|+|||.+++.+++..-
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4465555555554443 24556999999999999999999988843
No 331
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.36 E-value=0.018 Score=54.88 Aligned_cols=107 Identities=11% Similarity=0.178 Sum_probs=56.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH---HHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD---KLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
.+|.|+|..|+||||++..+....... ....++. +.++.. .... .+..+-.. ..........+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E--~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIE--FVHESKRSLINQREV----GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCcc--ccccCccceeeeccc----CCCccCHHHHHHHHhc
Confidence 478999999999999999888776532 2333332 222111 0000 01111010 1111223445566666
Q ss_pred ccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhH
Q 005834 258 NEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL 307 (675)
Q Consensus 258 ~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (675)
. .+=.+++|.+.+.+........ ...|-.++.|+....+
T Consensus 73 ~-~pd~ii~gEird~e~~~~~l~~----------a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 Q-DPDVILVGEMRDLETIRLALTA----------AETGHLVMSTLHTNSA 111 (198)
T ss_pred C-CcCEEEEcCCCCHHHHHHHHHH----------HHcCCEEEEEecCCcH
Confidence 4 4679999999766544332111 2234457777765543
No 332
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.042 Score=56.46 Aligned_cols=86 Identities=27% Similarity=0.298 Sum_probs=58.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-CcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-NESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~ 258 (675)
-.+|.|-|-+|+|||||.-+++.+...+. .+++|+-.+. ..++ +--++.|+.+.+. ..-.+...+.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999988653 6777765544 3222 2335666654321 11122334556666666
Q ss_pred cCeEEEEecCccc
Q 005834 259 EERHLIILDNIWG 271 (675)
Q Consensus 259 ~k~~LlVlDdv~~ 271 (675)
.++-++|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 7899999999854
No 333
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.34 E-value=0.075 Score=50.97 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=58.1
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccC
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELN 242 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~ 242 (675)
.++.|.. .+-..++|+|.+|+|||+|+..+.+... -+.++++.+.+.. ...++.+++...-..+. ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3444441 2346789999999999999999999875 3556888887654 45666666643311110 001
Q ss_pred cCHHH------HHHHHHHHHh-ccCeEEEEecCcc
Q 005834 243 ESIFD------RANRLCRVLK-NEERHLIILDNIW 270 (675)
Q Consensus 243 ~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 270 (675)
..... ..-.+.+++. .+++.|+++||+.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 11111 1123344444 4789999999984
No 334
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.066 Score=49.07 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999999886
No 335
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.33 E-value=0.011 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
.+++.|+|..|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 336
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.31 E-value=0.066 Score=58.59 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=57.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------------cCc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------------LNE 243 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~~~ 243 (675)
.-.++.|.|.+|+|||||+.++......+ -..+++++..+ +..++.... +.++.+.. ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34699999999999999999998877543 35677777655 445555553 45554321 012
Q ss_pred CHHHHHHHHHHHHhccCeEEEEecCcc
Q 005834 244 SIFDRANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 244 ~~~~~~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
...+....+.+.+...+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 235566667666665456678888873
No 337
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.31 E-value=0.068 Score=56.79 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=61.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESI------ 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~------ 245 (675)
.-..++|.|.+|+|||+|+.++.+.... .+-+.++++-+.+.. ...++.+++...-.... ..+.+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4467899999999999999998887552 234778888887665 45666666654322110 001111
Q ss_pred HHHHHHHHHHHhc--cCeEEEEecCcccc
Q 005834 246 FDRANRLCRVLKN--EERHLIILDNIWGE 272 (675)
Q Consensus 246 ~~~~~~l~~~l~~--~k~~LlVlDdv~~~ 272 (675)
...+..+.+++.. +++.|+++||+-..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1233356677764 78999999999543
No 338
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.30 E-value=0.028 Score=59.88 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=40.3
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC
Q 005834 160 AFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD 211 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 211 (675)
.++||++.++.+...+..+ .-|.|.|.+|+|||++|+.+.......+.|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 5789999999988887644 4578999999999999999998765443443
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.28 E-value=0.017 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
+.++|.|+|.+|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 340
>PRK03839 putative kinase; Provisional
Probab=95.27 E-value=0.016 Score=54.35 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999875
No 341
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.25 E-value=0.023 Score=54.77 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=39.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe---------CCCCCHHHH--HHHHHHHhCCCcc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV---------TENPDHQKI--QDKLASDLGIKFE 240 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~~--~~~i~~~l~~~~~ 240 (675)
.+..|.++||+|+||||+.+.++.+...+ +....-|+. .-+.++++. .++..++.+..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~--~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK--KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc--cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 45688899999999999999999998765 322222222 223345443 4566777766544
No 342
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.25 E-value=0.061 Score=53.66 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999998775
No 343
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.25 E-value=0.039 Score=53.86 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc----------------c-
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE----------------L- 241 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------------~- 241 (675)
.-.++.|.|.+|+|||+|+.++......+ .=..++|++..++ ..++.+.+. .++.+.. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 34699999999999999999977554322 0135778887554 355544433 3332210 0
Q ss_pred ---CcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 242 ---NESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 242 ---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
..+..+....+.+.+...+...+|+|.+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1244556666766666545679999987443
No 344
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.23 E-value=0.078 Score=49.64 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=63.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC--CCCCHHHHHH------HHHHHhCCCccc-----CcC-
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT--ENPDHQKIQD------KLASDLGIKFEL-----NES- 244 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~~~------~i~~~l~~~~~~-----~~~- 244 (675)
.-.+++|+|..|.|||||++.++..... ..+.+++.-. ...+...... ++++.++..... .-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3468999999999999999999886542 3444443211 1112222211 245555543210 111
Q ss_pred HHHHHHHHHHHHhccCeEEEEecCccccccc---ccccCCCCccccccccCCCCeEEEEeccchhHH
Q 005834 245 IFDRANRLCRVLKNEERHLIILDNIWGELKF---DEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL 308 (675)
Q Consensus 245 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va 308 (675)
-+...-.+...+.. .+-++++|+.-..-+. +.+...+.. + ....+..||++|.+....
T Consensus 101 G~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~----~-~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRR----L-ARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHH----H-HHhcCCEEEEEeCCHHHH
Confidence 12233345555654 6789999987544221 112111111 1 012256788888776543
No 345
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.20 E-value=0.031 Score=54.97 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=48.8
Q ss_pred HHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 169 QDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 169 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
.+++..+. .++..+|+|.|.||+|||||.-.+......+++=-.++=|.-|.+++--.++.+=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 44555554 56778999999999999999999999998776666677777777776666555443
No 346
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.19 E-value=1.2 Score=49.07 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=73.7
Q ss_pred cccccHHHHHHHHHHHhc----c-CCccEEEEEcCCCCcHHHHHHHHHHHhhc---c---CCCCeEEEEEeCCCCCHHHH
Q 005834 159 EAFDSRKKVFQDVLEALK----D-DKLNIIGVYGMGGVGKTTLVKQVAKQVTE---D---KLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~F~~~~wv~vs~~~~~~~~ 227 (675)
...-+|+.+..+|-+++. + +..+.+-|.|.+|.|||..+..|.+.... + ..|+ .+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 345689999999888775 3 33458999999999999999999996652 1 2343 234444455678999
Q ss_pred HHHHHHHhCCCcccCcCHHHHHHHHHHHHh----ccCeEEEEecCccc
Q 005834 228 QDKLASDLGIKFELNESIFDRANRLCRVLK----NEERHLIILDNIWG 271 (675)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~ 271 (675)
...|...+..... ........|..++. ..+.+++++|+++.
T Consensus 475 Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 475 YEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred HHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 9999999876533 22223344444443 23568888898754
No 347
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.035 Score=51.66 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999954
No 348
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.15 Score=54.09 Aligned_cols=87 Identities=22% Similarity=0.278 Sum_probs=50.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
..+++++|..|+||||++..+..........+.+..++... .....+-+...++.++.+.....+..+.... ...+.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a-l~~l~~ 269 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM-LHELRG 269 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH-HHHhcC
Confidence 47999999999999999998887543222223444444332 1233444566677777765533343343322 233432
Q ss_pred cCeEEEEecCc
Q 005834 259 EERHLIILDNI 269 (675)
Q Consensus 259 ~k~~LlVlDdv 269 (675)
.-++++|-.
T Consensus 270 --~d~VLIDTa 278 (420)
T PRK14721 270 --KHMVLIDTV 278 (420)
T ss_pred --CCEEEecCC
Confidence 345666764
No 349
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.17 E-value=0.063 Score=53.68 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=42.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (675)
+.-+++.|+|.+|+|||+++.++....... ...++||+..+. ..++.+...+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 356799999999999999999999988755 888999998764 4455544443 543
No 350
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.16 E-value=0.041 Score=48.10 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=40.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
.+-|.|.|.+|+||||++..++....- -|+++|+-.....+....-+...-. .-+.+...+.|-..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~vkEn~l~~gyDE~y~c~---i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDLVKENNLYEGYDEEYKCH---ILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhHHhhhcchhcccccccCc---cccHHHHHHHHHHHHhc
Confidence 456889999999999999999966542 3677765433333332222211111 22444555666666654
No 351
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.14 E-value=0.096 Score=51.16 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=68.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCccc------CcCHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-----NPDHQKIQDKLASDLGIKFEL------NESIFD 247 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~~------~~~~~~ 247 (675)
+-.+++|||..|.||||+++.+..-.... .+.++..-.+ .....+...++++.++.+... +-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999998876643 2333332111 112334456666666644320 112122
Q ss_pred -HHHHHHHHHhccCeEEEEecCccccccc---ccccCCCCccccccccCCCCeEEEEeccchhHHhh
Q 005834 248 -RANRLCRVLKNEERHLIILDNIWGELKF---DEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRN 310 (675)
Q Consensus 248 -~~~~l~~~l~~~k~~LlVlDdv~~~~~~---~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~ 310 (675)
..-.+.+.|.- ++-++|.|..-+..+. ..+...+.+ +....|-..+..|.+-.++.+
T Consensus 115 rQRi~IARALal-~P~liV~DEpvSaLDvSiqaqIlnLL~d-----lq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALAL-NPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHhh-CCcEEEecCchhhcchhHHHHHHHHHHH-----HHHHhCCeEEEEEEEHHhhhh
Confidence 22345555553 7899999987544221 111111111 113456667888888777654
No 352
>PRK05439 pantothenate kinase; Provisional
Probab=95.13 E-value=0.15 Score=51.82 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999888654
No 353
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.02 Score=54.23 Aligned_cols=28 Identities=43% Similarity=0.643 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.+.+|+|.|.+|+||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4578999999999999999999998774
No 354
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.10 E-value=0.019 Score=53.11 Aligned_cols=27 Identities=37% Similarity=0.601 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999988754
No 355
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.08 E-value=0.064 Score=56.68 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCHH-----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESIF----- 246 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~~----- 246 (675)
.-..++|+|..|+|||||++.+++... .+.++.+-+.+.. ...++..+++..-+.... .+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 446899999999999999999986433 3566667776654 345566665443222110 011111
Q ss_pred -HHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 247 -DRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 247 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
..+..+.+++. .+++.|+++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 12234556663 368999999998543
No 356
>PRK00625 shikimate kinase; Provisional
Probab=95.06 E-value=0.019 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988865
No 357
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.13 Score=49.38 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=57.6
Q ss_pred CccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+.++-|-.+.++++.+... -+.++-|.++|++|.|||-+|++|+|+-... | +.|-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig--- 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG--- 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh---
Confidence 34456677777777766543 1356778899999999999999999976532 3 22211
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccc
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
.++.+..- ......+..+.+--+.+|-++|+||.++.
T Consensus 245 -----selvqkyv------gegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 245 -----SELVQKYV------GEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -----HHHHHHHh------hhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11111110 01112334455555567889999998843
No 358
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.05 E-value=0.12 Score=55.58 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
.+|++++|..|+||||++.+++.....+..-..+..++... .....+-++..++.++.+........+....+ ..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~- 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR- 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc-
Confidence 47999999999999999999998765332222445554432 12334445556677666543222222222222 2333
Q ss_pred cCeEEEEecCc
Q 005834 259 EERHLIILDNI 269 (675)
Q Consensus 259 ~k~~LlVlDdv 269 (675)
....+++|-.
T Consensus 334 -d~d~VLIDTa 343 (484)
T PRK06995 334 -NKHIVLIDTI 343 (484)
T ss_pred -CCCeEEeCCC
Confidence 2346667765
No 359
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.03 E-value=0.046 Score=61.10 Aligned_cols=78 Identities=13% Similarity=0.182 Sum_probs=58.3
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDL 235 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (675)
.....++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+... ..+|+..+|..-+ ..+...+++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~np-~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPNP-EDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeCC-CcchHHHHHHHHHhc
Confidence 34556789998888887776654 4788999999999999999998754 3346778886653 336677777777666
Q ss_pred CC
Q 005834 236 GI 237 (675)
Q Consensus 236 ~~ 237 (675)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 54
No 360
>PRK04040 adenylate kinase; Provisional
Probab=95.03 E-value=0.022 Score=53.68 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998874
No 361
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.02 E-value=0.099 Score=55.47 Aligned_cols=90 Identities=16% Similarity=0.242 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCHH-----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESIF----- 246 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~~----- 246 (675)
.-..++|+|..|+|||||++++++... .+.++++-+.+.. ...++..+.+..-+.+.. .+.+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999998765 3455566666554 344555544443222110 011111
Q ss_pred -HHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 247 -DRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 247 -~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
.....+.+++. .+++.|+++||+-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 12234556663 478999999999543
No 362
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=0.86 Score=46.19 Aligned_cols=159 Identities=8% Similarity=0.070 Sum_probs=86.4
Q ss_pred HHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHh--------hccCCCCeEEEEEe-CCCCCHHHHHHHHHHHhCCC
Q 005834 169 QDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQV--------TEDKLFDKVAMAEV-TENPDHQKIQDKLASDLGIK 238 (675)
Q Consensus 169 ~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~ 238 (675)
+.+.+.+..++. ++..++|..|.||+++|..+.+.. ....|-+...++.. +....+.++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 344445544444 566799999999999999998886 22222223334332 1223333332 333333222
Q ss_pred cccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE-eccchhHHhhhcCCc
Q 005834 239 FELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL-TSRRQDLLRNVMNSQ 315 (675)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv-TtR~~~va~~~~~~~ 315 (675)
.- ..+++=++|+|++.... ..+.+...+.. -..++.+|+ |+....+........
T Consensus 85 ~~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-------Pp~~t~~il~~~~~~kll~TI~SRc 141 (299)
T PRK07132 85 SF----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEE-------PPKDTYFLLTTKNINKVLPTIVSRC 141 (299)
T ss_pred Cc----------------ccCCceEEEEecccccCHHHHHHHHHHhhC-------CCCCeEEEEEeCChHhChHHHHhCe
Confidence 10 11356788888875542 22222222222 234555555 444444444445567
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCC
Q 005834 316 KEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGE 358 (675)
Q Consensus 316 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 358 (675)
..+++.++++++....+... + .+ ++.++.++...+|
T Consensus 142 ~~~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSN 177 (299)
T ss_pred EEEECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCC
Confidence 89999999999988777654 1 11 2345556656665
No 363
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.01 E-value=0.055 Score=58.43 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=53.7
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeE-EEEEeCCCCC-HHHHHHHHHHHh-CCCcccCc---
Q 005834 171 VLEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKV-AMAEVTENPD-HQKIQDKLASDL-GIKFELNE--- 243 (675)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~~~~i~~~l-~~~~~~~~--- 243 (675)
+++.|. -..-....|+|.+|+|||||++.+.+..... +-++. +.+-|.+... +.++.+.+-..+ ....+...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~ 484 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDH 484 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHH
Confidence 444443 2344678999999999999999999976542 23333 3445554432 333322220000 00011011
Q ss_pred -CHHHHHHHHHHHHh-ccCeEEEEecCccc
Q 005834 244 -SIFDRANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 244 -~~~~~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
........+.+++. .++.+||++|++..
T Consensus 485 ~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 485 TTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11222333445553 47899999999843
No 364
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.01 E-value=0.032 Score=55.57 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=64.8
Q ss_pred HHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC-Cccc------
Q 005834 170 DVLEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGI-KFEL------ 241 (675)
Q Consensus 170 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~~~------ 241 (675)
.++..+. .....-++|+|..|.|||||.+.+....... .+.+++.-.+ ....+-..+++..... +...
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEE-eecchhHHHHHHHhccccccccccccc
Confidence 3333333 3445789999999999999999999876532 3333332111 0000111233322221 1100
Q ss_pred CcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhH
Q 005834 242 NESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL 307 (675)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (675)
..+.......+...+..-.+-++++|.+-..+.+..+... ...|..||+||....+
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~----------~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEA----------LHAGVSIIATAHGRDV 231 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHH----------HhCCCEEEEEechhHH
Confidence 0011111233444444346789999998655444333221 1247789999987655
No 365
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.01 E-value=0.089 Score=48.50 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=47.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhcc-C
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNE-E 260 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-k 260 (675)
++.|.|.+|+|||++|.++.... ...++++.-.+.++. ++...|.+.-..... .....+....+.+.+... +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~-~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPA-HWRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCC-CceEeecHHHHHHHHHhcCC
Confidence 36799999999999999997651 345677766666654 355554442222211 222222333444444321 2
Q ss_pred eEEEEecCc
Q 005834 261 RHLIILDNI 269 (675)
Q Consensus 261 ~~LlVlDdv 269 (675)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347999987
No 366
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.00 E-value=0.026 Score=50.26 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999998753 355555555544
No 367
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.98 E-value=0.072 Score=56.56 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=52.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-----CCcccCcCHH------H
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLG-----IKFELNESIF------D 247 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-----~~~~~~~~~~------~ 247 (675)
.-..++|+|..|+|||||++.+...... ..+++++.-.+..++.++....+.... .-...+.+.. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3468999999999999999988765442 234555443344455554444333221 1111111111 1
Q ss_pred HHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 248 RANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 248 ~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
....+.+++. .++..|+++||+...
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2233455554 368999999998543
No 368
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.045 Score=54.19 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=25.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
-++|.++|++|.|||+|++.++++..++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 3789999999999999999999998764
No 369
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.98 E-value=0.022 Score=57.06 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=48.0
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHH
Q 005834 169 QDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDR 248 (675)
Q Consensus 169 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 248 (675)
..+++.+...+ +-+.++|..|+|||++++......... .| ...-++.+...+...+++.|-..+..... .
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~-~------ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQKIIESKLEKRRG-R------ 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHHHCCCTTECECTT-E------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-C------
Confidence 44555555544 455899999999999999988754432 11 24455666554444443322111111000 0
Q ss_pred HHHHHHHHhccCeEEEEecCccc
Q 005834 249 ANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 249 ~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
...- ..+|+.++++||+.-
T Consensus 93 ---~~gP-~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 93 ---VYGP-PGGKKLVLFIDDLNM 111 (272)
T ss_dssp ---EEEE-ESSSEEEEEEETTT-
T ss_pred ---CCCC-CCCcEEEEEecccCC
Confidence 0000 125889999999844
No 370
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.021 Score=53.32 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=25.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
..+|+|-||=|+||||||+.+.++....
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999998743
No 371
>PRK08149 ATP synthase SpaL; Validated
Probab=94.97 E-value=0.092 Score=55.58 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCc------ccCcCH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKF------ELNESI------ 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~------~~~~~~------ 245 (675)
+-..++|+|..|+|||||++.+++... -+.++...+... .+..++..+......... ..+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456899999999999999999987544 234344444433 355666666665432211 001111
Q ss_pred HHHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 246 FDRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
......+.+++. .+++.|+++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 122334555553 478999999999543
No 372
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.95 E-value=0.081 Score=55.35 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHhccC--------------CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 160 AFDSRKKVFQDVLEALKDD--------------KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.++|.++.++.+.-.+... ..+-|.++|++|+|||++|+.+......
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678888877776554421 2467899999999999999999998764
No 373
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.92 E-value=0.0093 Score=34.13 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=14.4
Q ss_pred CccEEEecCCCCCCCcccccc
Q 005834 569 GLRVLNFTGIHFSSLPSSLGR 589 (675)
Q Consensus 569 ~L~~L~l~~~~~~~lp~~i~~ 589 (675)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 367777777777777766554
No 374
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.91 E-value=0.27 Score=48.05 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLG 236 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (675)
-.++.|.|.+|+||||||.++......+ -..++|++... +..++... +++++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 4689999999999999999887654322 35678887744 33444333 34443
No 375
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.90 E-value=0.021 Score=48.35 Aligned_cols=24 Identities=46% Similarity=0.778 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
|-|+|.+|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887764
No 376
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.90 E-value=0.13 Score=54.96 Aligned_cols=94 Identities=20% Similarity=0.318 Sum_probs=60.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCHH----
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESIF---- 246 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~---- 246 (675)
..-+.++|.|.+|+|||||+.++........ =+.++++-+.+.. .+.++.+++...-.... ..+.+..
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999887765432 2467777777654 45667766665322211 0011111
Q ss_pred --HHHHHHHHHHh--ccCeEEEEecCcccc
Q 005834 247 --DRANRLCRVLK--NEERHLIILDNIWGE 272 (675)
Q Consensus 247 --~~~~~l~~~l~--~~k~~LlVlDdv~~~ 272 (675)
.....+.++++ ++++.|+++||+...
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 22334666663 478999999999543
No 377
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.88 E-value=0.046 Score=56.33 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=40.4
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~ 50 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLP 50 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhc
Confidence 456789999998887777777677788999999999999999987653
No 378
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.85 E-value=0.21 Score=56.60 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=49.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD--HQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
.++++++|+.|+||||.+.+++...........+..++.. .+. ..+-++...+.++.+.....+..+....+ +.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al-~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL-AALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH-HHhc
Confidence 4699999999999999999988776422112345555432 233 44556666777776554223333332222 3333
Q ss_pred ccCeEEEEecCc
Q 005834 258 NEERHLIILDNI 269 (675)
Q Consensus 258 ~~k~~LlVlDdv 269 (675)
+ + =++++|-.
T Consensus 263 ~-~-D~VLIDTA 272 (767)
T PRK14723 263 D-K-HLVLIDTV 272 (767)
T ss_pred C-C-CEEEEeCC
Confidence 2 2 35666655
No 379
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.82 E-value=0.021 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988764
No 380
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.81 E-value=0.029 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...|.++|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 381
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.81 E-value=0.2 Score=53.37 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCHH----
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESIF---- 246 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~---- 246 (675)
.+-..++|.|.+|+|||||+.++........ =..++++-+.+.. ...+++.++...-.... ..+.+..
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~~-~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhcC-CCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999888765321 2467788777654 45667776654322111 0011111
Q ss_pred --HHHHHHHHHHhc--cCeEEEEecCcccc
Q 005834 247 --DRANRLCRVLKN--EERHLIILDNIWGE 272 (675)
Q Consensus 247 --~~~~~l~~~l~~--~k~~LlVlDdv~~~ 272 (675)
.....+.++++. +++.|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 123356677754 68999999999543
No 382
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.80 E-value=0.14 Score=50.35 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHHHhc----c---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 161 FDSRKKVFQDVLEALK----D---DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
..|..-..+.++..+. + .++=+++.+|..|+||.-+++.+++.....+.=. ........
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------------~~V~~fva 149 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------------PFVHHFVA 149 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------------hhHHHhhh
Confidence 3455555555555554 2 3456999999999999999999998865331110 01111122
Q ss_pred HhCCCccc--CcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 234 DLGIKFEL--NESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 234 ~l~~~~~~--~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
.+..+... +.-.+++...+......-+|-|+|||+++..
T Consensus 150 t~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 150 TLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 22222110 0112334455555555568999999999764
No 383
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.79 E-value=0.089 Score=48.50 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|.|||||++.+.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999988654
No 384
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.78 E-value=0.07 Score=51.78 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=38.4
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 168 FQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 168 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
..++++.+. .++..+|+|.|.+|+|||||.-.+......+++=-.++=|.-|.+++--.++.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 344555554 35678999999999999999999999888654444555666666665444443
No 385
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.76 E-value=0.064 Score=50.11 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|.|||||++.+.....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999987654
No 386
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.19 Score=47.88 Aligned_cols=49 Identities=31% Similarity=0.331 Sum_probs=34.9
Q ss_pred cccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 159 EAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
.++-|-+-..+++.+... -+.++-|.++|++|.|||.||+.|+++-...
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 344455555555554432 2456778899999999999999999987643
No 387
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.73 E-value=0.13 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+.+.|++|.||||+++.+.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~ 25 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR 25 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999988763
No 388
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.69 E-value=0.034 Score=51.11 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999988764
No 389
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.69 E-value=0.046 Score=56.38 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=43.2
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++..++|.++.+..|+..+.++...-|.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45667899999999888888888888888999999999999999988764
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.68 E-value=0.63 Score=49.71 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccC-CC---CeEEEEEeC---------------------CCCCHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDK-LF---DKVAMAEVT---------------------ENPDHQKIQDKLAS 233 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs---------------------~~~~~~~~~~~i~~ 233 (675)
.-..|++||+.|+|||||.+.++-+..... +- .+..+-... .+....+..+.|+.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilg 494 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILG 494 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHH
Confidence 346789999999999999999998765321 00 000000000 01134556677777
Q ss_pred HhCCCcccCc------CHHHHHHHHHHHHhccCeEEEEecCccccccc
Q 005834 234 DLGIKFELNE------SIFDRANRLCRVLKNEERHLIILDNIWGELKF 275 (675)
Q Consensus 234 ~l~~~~~~~~------~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~ 275 (675)
.+|...+... +..+...-+..++.-..+-+||||.--+.-+.
T Consensus 495 rfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 495 RFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 7777643211 22223333444443347899999987665443
No 391
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.66 E-value=0.13 Score=59.36 Aligned_cols=184 Identities=17% Similarity=0.218 Sum_probs=91.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh--cc------------CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCc
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT--ED------------KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNE 243 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 243 (675)
.+.+++.|.|+.+.||||+.+.+.--.- .. ..|+. ++..++..-++..-+..+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~---------- 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSG---------- 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHHH----------
Confidence 3457899999999999999998864311 00 11221 22333322222111111100
Q ss_pred CHHHHHHHHHHHHhccCeEEEEecCcccccccc---cccCCCCccccccccCCCCeEEEEeccchhHHhhhcCCcc--eE
Q 005834 244 SIFDRANRLCRVLKNEERHLIILDNIWGELKFD---EVGIPSGDVKKERMDDQRRCTIILTSRRQDLLRNVMNSQK--EI 318 (675)
Q Consensus 244 ~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~~~~~~~~--~~ 318 (675)
.......+...+ ..+-|+++|..-...+.. .+... ++..+ ...|+.+|+||....++........ ..
T Consensus 394 -~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~a---ile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~ 465 (782)
T PRK00409 394 -HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAIS---ILEYL--RKRGAKIIATTHYKELKALMYNREGVENA 465 (782)
T ss_pred -HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHH---HHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEE
Confidence 011122233333 257899999986543221 11110 01111 2347899999999877543222111 11
Q ss_pred ecCCCCHHHHHHHHHHHh-CCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 005834 319 QIDALSKEEALHLFQKIV-GDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQLRSS 388 (675)
Q Consensus 319 ~l~~L~~~e~~~Lf~~~~-~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~~ 388 (675)
.+. ++. +... +.... .+.. -...|-.|++++ |+|-.+..-|.-+........+.+++.+...
T Consensus 466 ~~~-~d~-~~l~-~~Ykl~~G~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 466 SVE-FDE-ETLR-PTYRLLIGIP----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred EEE-Eec-CcCc-EEEEEeeCCC----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 111 111 1100 00000 0111 134577888877 8888888888887766666777777776543
No 392
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.66 E-value=0.053 Score=52.33 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=55.5
Q ss_pred cCCCccceeEeccccCcc--cccchhhhcCCCCccEEEecCCCCCCC-----c---------cccccccCCCEEEecccc
Q 005834 539 LQCPRLELLLLLEKGGGS--MPISDHFFDGTEGLRVLNFTGIHFSSL-----P---------SSLGRLINLQTLCLEYCR 602 (675)
Q Consensus 539 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~l-----p---------~~i~~L~~L~~L~l~~~~ 602 (675)
.+||+|+..+++.|..+. .+...+++++.+.|..|.+++|.+-.+ . +...+-+.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 356667777766554332 223345566666677777766654211 1 111233456666666665
Q ss_pred CCC-cc-----cccCCCCCcEEEeeCCCCCc-----c-chhhcCCCCCCEecCcCcc
Q 005834 603 LKD-IV-----IVGQLKKLEILSFRGSDIER-----L-PLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 603 l~~-~~-----~i~~l~~L~~L~l~~~~i~~-----l-p~~i~~L~~L~~L~l~~~~ 647 (675)
+.. +. .+....+|+++.+..|.|.. | -..+..+++|+.||+..|+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 443 21 22223456666666665431 1 1134455666666666655
No 393
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.65 E-value=0.15 Score=54.55 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=60.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC--eEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCH----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD--KVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESI---- 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~---- 245 (675)
.-..++|.|-.|+|||||+.++.+.....+.+. .++++-+.+.. ...+++.++...=..... .+.+.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 446789999999999999999998765321121 56677776654 456666666543222110 01111
Q ss_pred --HHHHHHHHHHHh--ccCeEEEEecCcccc
Q 005834 246 --FDRANRLCRVLK--NEERHLIILDNIWGE 272 (675)
Q Consensus 246 --~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 272 (675)
.-....+.+++. ++++.|+++||+...
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 122335677777 478999999999543
No 394
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.65 E-value=0.05 Score=60.13 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=40.8
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+..++|.+..++.+...+......-+.|+|.+|+|||++|+.+++...
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556889999999988877666666778999999999999999987543
No 395
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.64 E-value=0.046 Score=51.75 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 005834 166 KVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAE 217 (675)
Q Consensus 166 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (675)
.+-...++.|. ...++.+.|++|.|||.||...+-+.-..+.|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33444555554 457999999999999999999988776668899888774
No 396
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.61 E-value=0.025 Score=53.99 Aligned_cols=23 Identities=43% Similarity=0.757 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
+|+|.|..|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 397
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.61 E-value=0.093 Score=55.74 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.5
Q ss_pred ccccHHHHHHHHHHHhc-------cC---------CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALK-------DD---------KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.+..++.+...+. .. ..+.+.++|++|+|||++|+.+.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46899888887755441 10 135689999999999999999987664
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.60 E-value=0.073 Score=46.62 Aligned_cols=28 Identities=29% Similarity=0.263 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+|.+.|.-|+||||+++.+++....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999998754
No 399
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.60 E-value=0.037 Score=47.67 Aligned_cols=40 Identities=33% Similarity=0.455 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHH
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 227 (675)
|.|+|.+|+||||+|+.++...... |.. |....+..+.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~--f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS--FKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc--eeE---EEecCCCCcccc
Confidence 6799999999999999999987643 543 333344444443
No 400
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.60 E-value=0.049 Score=55.99 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=39.2
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.++..++|.++.++.+.-.+.+.+..-+.+.|.+|.||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456788999998887765544455678999999999999999998765
No 401
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.60 E-value=0.54 Score=54.11 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=36.9
Q ss_pred ccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 158 YEAFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+.+...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3457788888877766554 23345788999999999999999988654
No 402
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.58 E-value=0.027 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999885
No 403
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.56 E-value=0.25 Score=49.70 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
-.++.|.|.+|+||||++.+++.....+ +=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 4588899999999999999988776432 124688888765 445566655443
No 404
>PRK06217 hypothetical protein; Validated
Probab=94.53 E-value=0.029 Score=52.68 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCC--CeEEEE
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLF--DKVAMA 216 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 216 (675)
.|.|.|.+|+||||+|+.+....... +| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999887532 33 445563
No 405
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.52 E-value=0.032 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++.|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 406
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.52 E-value=0.12 Score=54.79 Aligned_cols=89 Identities=16% Similarity=0.339 Sum_probs=56.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCHHH----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESIFD---- 247 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~~~---- 247 (675)
+-..++|.|..|+|||||.+.+++... -+.++++-+.+.. ...++....+..-+.+.. .+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 456899999999999999999988765 3567777777654 345555443332221110 0111111
Q ss_pred --HHHHHHHHHh-ccCeEEEEecCccc
Q 005834 248 --RANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 248 --~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
....+.+++. .+++.|+++||+..
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 2234556664 47899999999954
No 407
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.48 E-value=0.086 Score=50.04 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE 240 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (675)
.|+|.|-||+||||+|..+......++.| .+.-|....+++. .++||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh-------HHhcCCCCC
Confidence 68999999999999999977766655433 3455555555543 456666654
No 408
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.46 E-value=0.031 Score=50.20 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|.|.|.+|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 409
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.45 E-value=0.07 Score=53.25 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 171 VLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 171 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
..+++...+..+|.|+|.+|+|||||+..+.+.....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 3444556788999999999999999999999987643
No 410
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.45 E-value=0.089 Score=56.74 Aligned_cols=87 Identities=23% Similarity=0.266 Sum_probs=52.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-CcCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-NESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~ 258 (675)
-.++.|.|.+|+|||||+.+++.....+ -..++|++..+. ..++.. -++.++...+. ..........+.+.+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999998876532 246788876543 333322 24556543210 00000112344444444
Q ss_pred cCeEEEEecCccc
Q 005834 259 EERHLIILDNIWG 271 (675)
Q Consensus 259 ~k~~LlVlDdv~~ 271 (675)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4567899999843
No 411
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.68 Score=47.13 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
..+-|.++|++|.|||-||+.++......
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 45678899999999999999999988744
No 412
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.42 E-value=0.16 Score=53.81 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=60.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccC--CCC---------eEEEEEeCCCCCHHHHHHHHHHHhC-CCcc------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDK--LFD---------KVAMAEVTENPDHQKIQDKLASDLG-IKFE------ 240 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~------ 240 (675)
.-+.++|.|-+|+|||||+.++.+...... -.| .++++.+.+.....+.+.+.+..-+ ....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 446789999999999999999998765200 012 5677778877666666666655544 2110
Q ss_pred cCcCHH------HHHHHHHHHHh--ccCeEEEEecCccc
Q 005834 241 LNESIF------DRANRLCRVLK--NEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~~------~~~~~l~~~l~--~~k~~LlVlDdv~~ 271 (675)
.+.+.. .....+.+++. .+++.|+++||+..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111 12334667777 47899999999944
No 413
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.41 E-value=0.063 Score=58.62 Aligned_cols=55 Identities=29% Similarity=0.365 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 005834 160 AFDSRKKVFQDVLEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV 218 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 218 (675)
.+.--.+-++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+=|.+-
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344455667888888862 2357899999999999999999999876 777778643
No 414
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.41 E-value=0.036 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 415
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.39 E-value=0.087 Score=53.68 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=58.5
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHh----CCCc-----
Q 005834 171 VLEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDL----GIKF----- 239 (675)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l----~~~~----- 239 (675)
+++.+. -.+-..++|.|..|+|||+|++++.+... -+.++++-+.+.. .+.+++.++-+.- +.+.
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtv 222 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTV 222 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEE
Confidence 444443 23446899999999999999999998643 4578888887654 4556666653211 1110
Q ss_pred ----ccCcCHH------HHHHHHHHHHh-ccCeEEEEecCcc
Q 005834 240 ----ELNESIF------DRANRLCRVLK-NEERHLIILDNIW 270 (675)
Q Consensus 240 ----~~~~~~~------~~~~~l~~~l~-~~k~~LlVlDdv~ 270 (675)
..+.... ...-.+.++++ .++..|+++|++.
T Consensus 223 lV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~t 264 (369)
T cd01134 223 LIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTS 264 (369)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChh
Confidence 0011111 12223455553 3688999999983
No 416
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.39 E-value=0.21 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+..|+|++|+|||+||..++-....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5678999999999999999876543
No 417
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.39 E-value=0.13 Score=46.59 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC---CCCHHHHHHHHH--H--HhCCC--cccCcCHH-----
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE---NPDHQKIQDKLA--S--DLGIK--FELNESIF----- 246 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~--~l~~~--~~~~~~~~----- 246 (675)
..|-|++..|.||||+|...+-..... =..+.++.+-+ .......++.+- . +.+.. ........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~--g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH--GYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 478888889999999999888776543 22334433322 233333333330 0 00110 00011111
Q ss_pred -HHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchh
Q 005834 247 -DRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD 306 (675)
Q Consensus 247 -~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (675)
+......+.+..++-=|+|||++-....+..+ +...++..+-....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli--~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLL--DVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCC--CHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223334444445569999998544222211 00011111111455678999999854
No 418
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.38 E-value=0.028 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=7.7
Q ss_pred CCcEEEeeCCCCCccc
Q 005834 614 KLEILSFRGSDIERLP 629 (675)
Q Consensus 614 ~L~~L~l~~~~i~~lp 629 (675)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666655
No 419
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.38 E-value=0.032 Score=50.50 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 420
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.38 E-value=0.13 Score=50.99 Aligned_cols=96 Identities=11% Similarity=0.170 Sum_probs=55.5
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCHHH--
Q 005834 179 KLNIIGVYGMGGVGKTTLV-KQVAKQVTEDKLFDK-VAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESIFD-- 247 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~-- 247 (675)
+-+.++|.|..|+|||+|| ..+.+... -+. ++++-+.+.. ...++.+++.+.-.... ..+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999995 66665432 344 3666676654 45666666654321110 00111111
Q ss_pred ----HHHHHHHHHh-ccCeEEEEecCcccc-cccccc
Q 005834 248 ----RANRLCRVLK-NEERHLIILDNIWGE-LKFDEV 278 (675)
Q Consensus 248 ----~~~~l~~~l~-~~k~~LlVlDdv~~~-~~~~~~ 278 (675)
..-.+.+++. .++..|+++||+... ..++++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 1234455554 368999999999543 234443
No 421
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.37 E-value=0.072 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|+|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988765
No 422
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.37 E-value=0.044 Score=52.67 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=27.6
Q ss_pred HhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 174 ALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 174 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+.+.++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988754
No 423
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.35 E-value=1.8 Score=44.29 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=33.1
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCC-C-CCchHHHHHHHHHhCCChhH
Q 005834 317 EIQIDALSKEEALHLFQKIVGDSMK-T-SAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 317 ~~~l~~L~~~e~~~Lf~~~~~~~~~-~-~~l~~~~~~I~~~c~GlPLa 362 (675)
++++++++.+|+..++..+.....- . ...+...+++.-..+|+|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 7899999999999999888752221 1 33345566676677999854
No 424
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.34 E-value=0.2 Score=50.98 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQ 228 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 228 (675)
.|+=..+....++.++.. .+.|.|.|.+|+||||+|+.++...... .+.|.++...+..++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 343344455667777754 3469999999999999999999987632 3456666665554443
No 425
>PRK13949 shikimate kinase; Provisional
Probab=94.34 E-value=0.039 Score=51.02 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+-|.|+|++|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999875
No 426
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.33 E-value=0.036 Score=51.84 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 427
>PF13245 AAA_19: Part of AAA domain
Probab=94.33 E-value=0.12 Score=40.39 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=19.0
Q ss_pred CccEEEEEcCCCCcHHH-HHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTT-LVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTt-La~~v~~~~ 204 (675)
+.+++.|.|.+|.|||+ ++..+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45778889999999994 455555544
No 428
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.17 Score=51.46 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
-+-|..+|++|.|||-||++|+..-..
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 456889999999999999999998764
No 429
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.32 E-value=0.14 Score=47.32 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC---cccCcCHHHHHHHHHHHHhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIK---FELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~~l~~ 258 (675)
++.|.|.+|+||||+|..+...... .++++.-... ...+..+.|....... +..-+...++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999999876431 1334433333 3345555664443222 21111222333333322332
Q ss_pred cCeEEEEecCcc
Q 005834 259 EERHLIILDNIW 270 (675)
Q Consensus 259 ~k~~LlVlDdv~ 270 (675)
.-++++|.+.
T Consensus 77 --~~~VlID~Lt 86 (170)
T PRK05800 77 --GRCVLVDCLT 86 (170)
T ss_pred --CCEEEehhHH
Confidence 3378889873
No 430
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.31 E-value=0.13 Score=44.90 Aligned_cols=115 Identities=17% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCEEEeccccCCC--cccccCCCCCc
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKD--IVIVGQLKKLE 616 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~ 616 (675)
.+++|+.+.+.. ....+....|.+++.|+.+.+.++ +..++. .+..+..|+++.+.. .+.. ...+..+.+|+
T Consensus 10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 566777777732 233455566788888888888774 665543 356666788888865 3333 33566688888
Q ss_pred EEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCcc
Q 005834 617 ILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHL 664 (675)
Q Consensus 617 ~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L 664 (675)
.+++..+ +..++. .+.+. +|+.+.+.. .+..++...+. +.++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~-~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFK-NCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCcccc-ccccC
Confidence 8888654 666655 35665 788887765 35566666555 44444
No 431
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.30 E-value=0.26 Score=52.76 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=56.4
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhc-----cCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCcc------cCcCH
Q 005834 179 KLNIIGVYGMGGVGKTTLV-KQVAKQVTE-----DKLFDKVAMAEVTENPDHQKIQDKLASDLG-IKFE------LNESI 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~-~~~~------~~~~~ 245 (675)
.-..++|.|-.|+|||+|| ..+.+.... .+.-+.++++.+++..+...-+.+.++.-+ .... ...+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 666776532 123467888888887654332444444433 1110 01111
Q ss_pred HH------HHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 246 FD------RANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 246 ~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
.. ....+.+++. +++..|+|+||+...
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 2234555553 468999999999553
No 432
>PRK14530 adenylate kinase; Provisional
Probab=94.29 E-value=0.04 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 433
>PRK14529 adenylate kinase; Provisional
Probab=94.27 E-value=0.16 Score=48.92 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=44.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCe--EEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTEDKLFDK--VAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
|.|.|++|+||||+|+.++...... +.+. .+.-.+..........++++..-. ....+-....+.+.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~-----lvpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD-----LVPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC-----cchHHHHHHHHHHHHhccC
Confidence 7889999999999999999887632 2221 111122222233333333433211 1223334444556665322
Q ss_pred eEEEEecCcc
Q 005834 261 RHLIILDNIW 270 (675)
Q Consensus 261 ~~LlVlDdv~ 270 (675)
..=+|||..=
T Consensus 77 ~~g~iLDGfP 86 (223)
T PRK14529 77 KNGWLLDGFP 86 (223)
T ss_pred CCcEEEeCCC
Confidence 3458889873
No 434
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.25 E-value=0.14 Score=57.39 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=52.3
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGI 237 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (675)
...++|.++.++.+...+... +.+.++|++|+||||+|+.+.+..... .|...+++.-+ ..+..+++..++.+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 446789998888777766654 355699999999999999999877543 34444433322 23555667777776654
No 435
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.21 E-value=0.1 Score=52.51 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=42.7
Q ss_pred CccccccHHHHHHH---HHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC
Q 005834 157 DYEAFDSRKKVFQD---VLEALKDD--KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD 211 (675)
Q Consensus 157 ~~~~~~gr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 211 (675)
...+++|..+..+. +++++.++ .-+.|.|+|++|.|||+||-.+.+.....-+|-
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 35578897765443 56666544 347899999999999999999999998777774
No 436
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.21 E-value=0.13 Score=55.48 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccC-cCHHHHHHHHHHHHhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELN-ESIFDRANRLCRVLKN 258 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~~ 258 (675)
-.++.|.|.+|+|||||+.++....... -..++|++..+. ..++.. -++.++...+.- .........+.+.+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4689999999999999999998776533 135788876543 333322 233444332100 0001122344445544
Q ss_pred cCeEEEEecCccc
Q 005834 259 EERHLIILDNIWG 271 (675)
Q Consensus 259 ~k~~LlVlDdv~~ 271 (675)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 4667899999854
No 437
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.047 Score=48.80 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=33.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIK 238 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (675)
.+++.|+|.+|+||||+.+.+.... +. +.. .+..++.-+++...|..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~i---------vNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HKI---------VNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--cee---------eeHhHHHHHHHHHhCCc
Confidence 5799999999999999999887776 21 111 24456666777666654
No 438
>PRK13947 shikimate kinase; Provisional
Probab=94.20 E-value=0.04 Score=51.09 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998875
No 439
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.18 E-value=0.18 Score=54.12 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=60.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc---CCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCH---
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED---KLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESI--- 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~--- 245 (675)
.-..++|.|-.|+|||||+.++.+..... ..+ .++++-+++.. .+.+++.++...=..... .+.+.
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R 220 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIER 220 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHH
Confidence 44678999999999999999999886532 111 56777777654 456777776653222110 01111
Q ss_pred ---HHHHHHHHHHHh--ccCeEEEEecCcccc
Q 005834 246 ---FDRANRLCRVLK--NEERHLIILDNIWGE 272 (675)
Q Consensus 246 ---~~~~~~l~~~l~--~~k~~LlVlDdv~~~ 272 (675)
.-....+.++++ ++++.|+++||+...
T Consensus 221 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 221 ILTPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 123345677776 578999999998543
No 440
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.18 E-value=0.18 Score=51.57 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcc------cCcCH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFE------LNESI------ 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~------~~~~~------ 245 (675)
.-..++|+|..|.|||||.+.+...... +......+.. ..+..++.......-+.... .+.+.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 3468899999999999999998876542 3334444443 33555655555544322110 01111
Q ss_pred HHHHHHHHHHHh-ccCeEEEEecCccc
Q 005834 246 FDRANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
....-.+.+++. .++..|+++||+-.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 112223445553 46899999999843
No 441
>PRK05922 type III secretion system ATPase; Validated
Probab=94.15 E-value=0.19 Score=53.25 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=52.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCcc------cCcCH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKFE------LNESI------ 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~------~~~~~------ 245 (675)
.-..++|+|..|+|||||.+.+.+... .+....+.+++. ....+.+.+.......... .+.+.
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 446799999999999999999987653 333344334332 2344555554433322110 01111
Q ss_pred HHHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 246 FDRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
......+.+++. .+++.|+++||+-..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112334566664 478999999999543
No 442
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.13 E-value=0.81 Score=50.27 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=68.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc-C-----CCCeEEEEEeCCC---------------C-C-HHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED-K-----LFDKVAMAEVTEN---------------P-D-HQKIQDKLASDL 235 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-----~F~~~~wv~vs~~---------------~-~-~~~~~~~i~~~l 235 (675)
.-..|+|+|..|+|||||.+.+....... + .--.+.++.-... + + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34579999999999999999997655422 1 1111223322110 0 1 133444455555
Q ss_pred CCCcccC------cCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhHHh
Q 005834 236 GIKFELN------ESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLLR 309 (675)
Q Consensus 236 ~~~~~~~------~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va~ 309 (675)
+.+.+.. -+..+...-....+.-.++-+||||.--+.-+.+.+.. +.+. + ..-.+.||+.|.++....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~a-Le~a----L-~~f~Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA-LEEA----L-LDFEGTVLLVSHDRYFLD 500 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHH-HHHH----H-HhCCCeEEEEeCCHHHHH
Confidence 5543311 12223333333333334789999998766544333211 1010 1 122344778888876643
Q ss_pred hhcCCcceEecC
Q 005834 310 NVMNSQKEIQID 321 (675)
Q Consensus 310 ~~~~~~~~~~l~ 321 (675)
.. +..++.+.
T Consensus 501 ~v--a~~i~~~~ 510 (530)
T COG0488 501 RV--ATRIWLVE 510 (530)
T ss_pred hh--cceEEEEc
Confidence 22 24455544
No 443
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.13 E-value=0.073 Score=50.71 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.....+|.|+|.+|+||||||+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999987643
No 444
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.12 E-value=0.069 Score=50.15 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=29.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV 218 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 218 (675)
.++|.|+|+.|+|||||++.+......+ |..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeecc
Confidence 4789999999999999999999987643 754445443
No 445
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.08 E-value=0.04 Score=51.59 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
++|+|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998854
No 446
>PRK14527 adenylate kinase; Provisional
Probab=94.08 E-value=0.053 Score=51.37 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+|.|+|.+|+||||+|+.+++...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999988765
No 447
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=94.05 E-value=0.21 Score=53.57 Aligned_cols=93 Identities=20% Similarity=0.294 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc-------------ccCcC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF-------------ELNES 244 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------------~~~~~ 244 (675)
.-+.++|.|-.|+|||||+.++....... +=+.++++-+.+.. ...++..++...-.... ....+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEP 238 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCC
Confidence 45679999999999999999988874321 12778888887765 45667776665211110 00111
Q ss_pred H------HHHHHHHHHHHhc-c-CeEEEEecCcccc
Q 005834 245 I------FDRANRLCRVLKN-E-ERHLIILDNIWGE 272 (675)
Q Consensus 245 ~------~~~~~~l~~~l~~-~-k~~LlVlDdv~~~ 272 (675)
. ......+.++++. + ++.||++||+...
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 1 1233456777764 3 4899999999543
No 448
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.01 E-value=0.049 Score=46.87 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999886643
No 449
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.98 E-value=0.11 Score=52.86 Aligned_cols=49 Identities=29% Similarity=0.368 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.+++.+.|.||+||||+|...+-.....+ ..++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777766543 44777777666666665543
No 450
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.98 E-value=0.05 Score=49.42 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEE
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAM 215 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 215 (675)
|++|+|..|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58999999999999999999988643 3443333
No 451
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.97 E-value=0.055 Score=50.24 Aligned_cols=26 Identities=35% Similarity=0.407 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998764
No 452
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.97 E-value=0.2 Score=53.32 Aligned_cols=90 Identities=14% Similarity=0.299 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------cCcCH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKFE------LNESI------ 245 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------~~~~~------ 245 (675)
.-..++|+|..|+|||||++.+..... .+.++...+.... ...++...+...-+.... .+.+.
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a 242 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRA 242 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHH
Confidence 446799999999999999999876532 3444444444433 455555555544322210 01111
Q ss_pred HHHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 246 FDRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
......+.+++. .+++.|+++||+...
T Consensus 243 ~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 243 AMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 112234556654 478999999998543
No 453
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.97 E-value=0.044 Score=53.01 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
..+++.|.|..|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999877
No 454
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.3 Score=44.30 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.5
Q ss_pred ccCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 176 KDDKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 176 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
..++..+|.+.|.+|.||||+|..++......
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34567799999999999999999999988653
No 455
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.045 Score=49.41 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 005834 182 IIGVYGMGGVGKTTLVKQVA 201 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~ 201 (675)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 456
>PF13479 AAA_24: AAA domain
Probab=93.92 E-value=0.22 Score=47.99 Aligned_cols=31 Identities=32% Similarity=0.415 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN 221 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 221 (675)
-.+.|+|.+|+||||+|..+ +..+++.....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46789999999999999875 55667766554
No 457
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.92 E-value=0.05 Score=49.33 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 458
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.91 E-value=0.18 Score=53.48 Aligned_cols=91 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCc------ccCcCHH----
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKF------ELNESIF---- 246 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~------~~~~~~~---- 246 (675)
..-..++|+|..|+|||||++.+.+... .+..++..+.+. ..+.+++.+....-.... ....+..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3456899999999999999999887554 455556555553 344455555432111100 0011111
Q ss_pred --HHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 247 --DRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 247 --~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
.....+.+++. ++++.|+++||+...
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 12334556664 468999999999543
No 459
>PRK13975 thymidylate kinase; Provisional
Probab=93.90 E-value=0.053 Score=51.55 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..|.|.|+.|+||||+|+.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998763
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.89 E-value=0.38 Score=49.29 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
...+++++|++|+||||++..++......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887643
No 461
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.89 E-value=0.057 Score=51.18 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|.+|+||||+|+.+.....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988753
No 462
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.88 E-value=0.19 Score=53.57 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=54.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc------cCcCH------
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE------LNESI------ 245 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~------ 245 (675)
.+-..++|.|..|+|||||++.++...... .++++..-.+.....++.+.+...-+.... .+.+.
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 345789999999999999999998765421 234443333444555665655543222110 01111
Q ss_pred HHHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 246 FDRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 246 ~~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
......+.+++. .+++.|+++||+...
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112234556664 468999999998543
No 463
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.86 E-value=0.17 Score=48.01 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 464
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.85 E-value=0.057 Score=51.76 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|+|+.|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346899999999999999999998753
No 465
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.85 E-value=0.064 Score=48.60 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
.+|++|+|+.|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999999998865
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.83 E-value=0.28 Score=53.77 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----------------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF-DKVAMAEVTENPDHQKIQDKLASDLGIKFE----------------- 240 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------------- 240 (675)
.-+++.|.|.+|+||||||.++...-..+ + ..++||+..+ +..++.+.. +.++.+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchh
Confidence 35799999999999999999987654322 3 5688888864 444444443 33333211
Q ss_pred ------cCcCHHHHHHHHHHHHhccCeEEEEecCc
Q 005834 241 ------LNESIFDRANRLCRVLKNEERHLIILDNI 269 (675)
Q Consensus 241 ------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv 269 (675)
...+.......+...+..+++-.+|+|-+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 01133445566666776666778999954
No 467
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.82 E-value=0.17 Score=47.94 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999998765
No 468
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.81 E-value=0.19 Score=53.27 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=52.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------ccCcCHH-----
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIKF------ELNESIF----- 246 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 246 (675)
.-..++|+|..|+|||||++.+.+... .+..+...+.+.. ...++...+...-.... ..+.+..
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 446799999999999999998887554 2344445555443 34445554443321110 0011111
Q ss_pred -HHHHHHHHHHh-ccCeEEEEecCccc
Q 005834 247 -DRANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 247 -~~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
.....+.+++. .+++.|+++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 12234455553 46899999999844
No 469
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.80 E-value=0.19 Score=53.24 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=54.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc------cCcCH------H
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE------LNESI------F 246 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~------~ 246 (675)
.-..++|+|..|+|||||++.++..... ...++...-.+.....+++...+..-+.... .+.+. .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999999886643 1233333222335666776666554332210 01111 1
Q ss_pred HHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 247 DRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 247 ~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
..+..+.+++. .+++.|+++||+-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 12223445553 368999999998544
No 470
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.80 E-value=0.15 Score=52.87 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=47.8
Q ss_pred cccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 161 FDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
++|+++.+..+...+..+ +.+.+.|.+|+|||+||+.++..... ..++|.+.....+.++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 668887777776666543 45789999999999999999998762 34677777777777665443
No 471
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.78 E-value=0.11 Score=53.00 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe----CCCC---CHHH
Q 005834 160 AFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV----TENP---DHQK 226 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~---~~~~ 226 (675)
.|+|-++.++++++.+. +..-+|+.++|+.|.||||||..+.+-.+. | .+|.-. .+.+ =+.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~~ 136 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPKE 136 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCHh
Confidence 67899999999999886 345689999999999999999999888774 3 333322 2221 2456
Q ss_pred HHHHHHHHhCCCcccCcC
Q 005834 227 IQDKLASDLGIKFELNES 244 (675)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~ 244 (675)
+-.++.+.++....+...
T Consensus 137 ~r~~~~~~~~~~i~g~l~ 154 (358)
T PF08298_consen 137 LRREFEDELGIRIEGELC 154 (358)
T ss_pred HHHHHHHHhCcccCCCcC
Confidence 666777777775543333
No 472
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.77 E-value=0.24 Score=52.43 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHHHhc-------c---C--------CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALK-------D---D--------KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.++.++.+...+. . . ....+.++|++|+|||++|+.+.....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46799988887765541 1 0 125789999999999999999997664
No 473
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.76 E-value=0.28 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
+|+|.|..|+||||+++.+......
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887754
No 474
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.76 E-value=0.068 Score=51.09 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||++.+.--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 346899999999999999999987655
No 475
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.75 E-value=0.056 Score=52.92 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=23.1
Q ss_pred EEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 005834 185 VYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV 218 (675)
Q Consensus 185 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 218 (675)
|+|++|+||||+++.+.+.....+ ..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 689999999999999999887542 33445554
No 476
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.74 E-value=0.1 Score=53.25 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=37.5
Q ss_pred ccccccHHHHHHH---HHHHhccCC--ccEEEEEcCCCCcHHHHHHHHHHHhhccCCC
Q 005834 158 YEAFDSRKKVFQD---VLEALKDDK--LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF 210 (675)
Q Consensus 158 ~~~~~gr~~~~~~---l~~~L~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (675)
..++||..+..+. +++++.+.+ -+.|.+.|++|.|||+||..+.+....+-.|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4578897765444 566666554 5799999999999999999999998866445
No 477
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=1.3 Score=44.49 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 168 FQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 168 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-+.+...+..+.+ ....++|+.|+||+++|..++...-
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 3556666665554 4667999999999999999887654
No 478
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.68 E-value=0.047 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (675)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 479
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.67 E-value=0.6 Score=45.98 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=36.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
-.++.|.|.+|+|||+++.+++.+...+. =..++|++... +..++...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 35899999999999999999887765431 23567777655 55566666543
No 480
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.67 E-value=0.062 Score=49.52 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
|.|.|.+|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999875
No 481
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=93.66 E-value=0.098 Score=53.27 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=28.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
+.++|+|.|-||+||||++..+....... .+ .+.-|....
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~-g~-kVLliD~D~ 42 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEM-GQ-KILIVGCDP 42 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHC-CC-eEEEEeccc
Confidence 45789889999999999999887776643 22 355554443
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.62 E-value=0.055 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++.|+|+.|+|||||++.+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999977643
No 483
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.62 E-value=0.22 Score=52.27 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 160 AFDSRKKVFQDVLEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.++|.++.++.+..++.. -..+.|.++|++|+|||++|+.+......
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467998888888776642 11467899999999999999999988753
No 484
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.61 E-value=0.1 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.231 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
..+++.|.|..|.||||+.+.+..-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999988654
No 485
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.61 E-value=0.2 Score=53.12 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc------cCcCHH------
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE------LNESIF------ 246 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~------ 246 (675)
.-..++|+|..|+|||||++.+...... ...++...-.+.....++..+.+..-+.... .+.+..
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 3468999999999999999988876542 2223322222233455555554433222110 011111
Q ss_pred HHHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 247 DRANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 247 ~~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
.....+.+++. .+++.|+++||+-..
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 12234556664 368999999998543
No 486
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.60 E-value=0.053 Score=48.15 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|+|+|+.|+|||||++.+.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999988653
No 487
>PRK13695 putative NTPase; Provisional
Probab=93.59 E-value=0.099 Score=48.64 Aligned_cols=34 Identities=38% Similarity=0.523 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEE
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMA 216 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 216 (675)
.|+|+|.+|+|||||++.+++..... .+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999998876542 24434344
No 488
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.58 E-value=0.13 Score=52.40 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKI 227 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 227 (675)
+++.+.|-||+||||+|...+-....++ ..+.-++.....+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHH
Confidence 6899999999999999988887766542 33555555444444333
No 489
>COG4240 Predicted kinase [General function prediction only]
Probab=93.54 E-value=0.5 Score=44.60 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=52.9
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCC----CcccCcCHHHHHHHH
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGI----KFELNESIFDRANRL 252 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l 252 (675)
.+++-+++|.|+-|+||||++..+++....++. ..++..+..+-+-...-...++++.+. .......+..+...+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 356779999999999999999999999887643 466666665554444444455555421 111122344555556
Q ss_pred HHHHhccC
Q 005834 253 CRVLKNEE 260 (675)
Q Consensus 253 ~~~l~~~k 260 (675)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 66665544
No 490
>PRK13948 shikimate kinase; Provisional
Probab=93.54 E-value=0.079 Score=49.47 Aligned_cols=28 Identities=14% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.....|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998865
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.51 E-value=0.49 Score=52.37 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=55.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------------cCcC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------------LNES 244 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~~~~ 244 (675)
-.++.|.|.+|+|||+||.+++...... -..++|++.... +.++.+.+ +.++.+.. ....
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4688999999999999999998776433 467888887654 44544443 44443211 0112
Q ss_pred HHHHHHHHHHHHhccCeEEEEecCcc
Q 005834 245 IFDRANRLCRVLKNEERHLIILDNIW 270 (675)
Q Consensus 245 ~~~~~~~l~~~l~~~k~~LlVlDdv~ 270 (675)
..+....+.+.+...+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 34455566666654455688999874
No 492
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.46 E-value=0.78 Score=56.57 Aligned_cols=28 Identities=32% Similarity=0.248 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.++=|.++|++|.|||.||++++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3557889999999999999999998764
No 493
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.45 E-value=0.12 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=27.5
Q ss_pred HHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 168 FQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 168 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
++++.+.+.+ +++.++|..|+|||||...+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4556666643 899999999999999999988764
No 494
>PRK13946 shikimate kinase; Provisional
Probab=93.45 E-value=0.074 Score=50.02 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999999875
No 495
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.43 E-value=0.043 Score=52.50 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 496
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.40 E-value=0.074 Score=53.68 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT 219 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 219 (675)
+.|+|+|-||+||||++..++.....++ + .++-|...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 4789999999999999999998877543 2 34444443
No 497
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.39 E-value=0.069 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVA 201 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~ 201 (675)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 498
>PLN02200 adenylate kinase family protein
Probab=93.39 E-value=0.077 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|++|+||||+|+.+.....
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999987654
No 499
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.38 E-value=0.13 Score=48.44 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.4
Q ss_pred ccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
...++|.+..+..+.-.... ..-+.++|.+|+|||++|+.+-.-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 44677888777766555443 368899999999999999998763
No 500
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.38 E-value=0.2 Score=52.63 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=33.6
Q ss_pred HHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 166 KVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 166 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..++.+++.+.......+.|.|.||.|||+|.+.+.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 44566666666667788999999999999999999998765
Done!