Query 005834
Match_columns 675
No_of_seqs 454 out of 3419
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 08:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.7E-49 2E-53 435.5 18.9 311 162-501 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-39 5.3E-44 397.4 23.9 315 155-499 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 5.3E-40 1.8E-44 367.3 17.7 284 161-493 130-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-35 4.5E-40 333.4 25.9 309 156-497 121-450 (591)
5 2qen_A Walker-type ATPase; unk 99.7 6.8E-15 2.3E-19 153.4 21.9 299 156-493 9-349 (350)
6 2fna_A Conserved hypothetical 99.6 7.8E-14 2.7E-18 145.7 25.3 299 156-492 10-356 (357)
7 1w5s_A Origin recognition comp 99.6 2.2E-14 7.4E-19 153.2 21.4 309 159-488 22-387 (412)
8 4fcg_A Uncharacterized protein 99.5 2.8E-14 9.6E-19 147.1 14.2 151 519-674 103-265 (328)
9 4ezg_A Putative uncharacterize 99.5 6.3E-14 2.1E-18 133.2 13.5 146 519-673 43-192 (197)
10 3rfs_A Internalin B, repeat mo 99.5 8.7E-14 3E-18 139.4 15.2 151 519-673 62-216 (272)
11 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 134.2 15.3 145 524-673 23-170 (229)
12 3m19_A Variable lymphocyte rec 99.5 1.6E-13 5.3E-18 135.9 16.0 151 519-673 34-190 (251)
13 4fcg_A Uncharacterized protein 99.5 6.7E-14 2.3E-18 144.3 13.8 153 519-674 126-289 (328)
14 2o6q_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 137.3 16.0 150 520-673 61-216 (270)
15 3rfs_A Internalin B, repeat mo 99.5 2.7E-13 9.2E-18 135.9 15.5 149 519-673 40-192 (272)
16 2v9t_B SLIT homolog 2 protein 99.5 2.7E-13 9.3E-18 131.1 14.2 145 524-673 15-163 (220)
17 2o6q_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 134.3 16.0 151 519-673 36-192 (270)
18 2v70_A SLIT-2, SLIT homolog 2 99.5 2.9E-13 9.8E-18 131.0 13.9 147 523-673 14-164 (220)
19 1p9a_G Platelet glycoprotein I 99.5 3.1E-13 1.1E-17 136.6 14.7 149 519-673 54-206 (290)
20 1h6t_A Internalin B; cell adhe 99.5 4.6E-13 1.6E-17 135.5 15.8 145 519-673 67-211 (291)
21 1p9a_G Platelet glycoprotein I 99.5 2.8E-13 9.5E-18 137.0 14.0 149 519-673 30-183 (290)
22 2o6s_A Variable lymphocyte rec 99.5 7.4E-13 2.5E-17 126.9 15.3 143 525-672 12-158 (208)
23 1h6u_A Internalin H; cell adhe 99.5 7.2E-13 2.5E-17 135.3 16.0 145 519-673 62-206 (308)
24 3m19_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 130.5 15.2 148 521-673 15-166 (251)
25 1ozn_A Reticulon 4 receptor; N 99.4 7.6E-13 2.6E-17 133.6 14.8 150 520-672 56-211 (285)
26 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.8E-17 133.9 15.8 145 519-673 84-228 (308)
27 1h6t_A Internalin B; cell adhe 99.4 9.1E-13 3.1E-17 133.3 14.5 145 519-673 45-189 (291)
28 1xeu_A Internalin C; cellular 99.4 8.2E-13 2.8E-17 131.5 13.5 144 519-673 40-183 (263)
29 2ell_A Acidic leucine-rich nuc 99.4 5.1E-13 1.8E-17 123.3 10.6 130 519-653 23-163 (168)
30 1ozn_A Reticulon 4 receptor; N 99.4 2E-12 6.8E-17 130.5 15.6 151 519-673 79-236 (285)
31 1m9s_A Internalin B; cell inva 99.4 1.4E-12 4.6E-17 145.0 14.7 145 519-673 64-208 (605)
32 4b8c_D Glucose-repressible alc 99.4 4.4E-13 1.5E-17 152.8 10.8 152 519-673 172-327 (727)
33 2je0_A Acidic leucine-rich nuc 99.4 6.8E-13 2.3E-17 119.8 9.8 126 542-671 17-149 (149)
34 2xot_A Amphoterin-induced prot 99.4 1.4E-12 4.7E-17 136.4 13.0 151 519-673 38-200 (361)
35 1a9n_A U2A', U2A'; complex (nu 99.4 3.1E-13 1.1E-17 125.8 7.2 101 569-672 43-150 (176)
36 1m9s_A Internalin B; cell inva 99.4 2.4E-12 8.1E-17 143.1 15.1 121 521-647 88-208 (605)
37 2z62_A TOLL-like receptor 4, v 99.4 2.3E-12 7.9E-17 129.3 13.1 134 519-655 27-167 (276)
38 3zyj_A Leucine-rich repeat-con 99.4 2.6E-12 8.8E-17 138.3 14.0 151 519-673 135-290 (440)
39 2xwt_C Thyrotropin receptor; s 99.4 1.7E-12 6E-17 127.2 11.2 107 564-672 101-215 (239)
40 2ell_A Acidic leucine-rich nuc 99.4 2.4E-12 8.1E-17 118.8 11.3 130 540-673 22-158 (168)
41 3zyi_A Leucine-rich repeat-con 99.4 4E-12 1.4E-16 137.2 14.2 151 519-673 146-301 (452)
42 1ogq_A PGIP-2, polygalacturona 99.4 2.2E-12 7.6E-17 132.0 11.4 148 520-672 50-207 (313)
43 1xku_A Decorin; proteoglycan, 99.4 4.8E-12 1.6E-16 130.6 13.9 105 568-673 192-304 (330)
44 2xwt_C Thyrotropin receptor; s 99.3 2.1E-12 7.1E-17 126.7 10.5 150 519-673 30-190 (239)
45 2v1u_A Cell division control p 99.3 5.9E-11 2E-15 125.2 21.9 293 159-475 19-350 (387)
46 2qby_B CDC6 homolog 3, cell di 99.3 2.8E-11 9.5E-16 127.7 19.3 287 159-475 20-338 (384)
47 2z62_A TOLL-like receptor 4, v 99.3 4.7E-12 1.6E-16 127.1 12.6 151 519-673 75-235 (276)
48 3zyi_A Leucine-rich repeat-con 99.3 5.7E-12 1.9E-16 136.1 13.9 149 520-672 123-276 (452)
49 2z66_A Variable lymphocyte rec 99.3 3.4E-12 1.2E-16 130.2 11.2 151 519-673 100-259 (306)
50 4ezg_A Putative uncharacterize 99.3 4.6E-12 1.6E-16 120.2 11.3 127 539-673 41-170 (197)
51 4fmz_A Internalin; leucine ric 99.3 1.3E-11 4.5E-16 128.2 15.4 146 519-673 198-344 (347)
52 2z7x_B TOLL-like receptor 1, v 99.3 9E-12 3.1E-16 137.1 14.8 151 519-673 323-479 (520)
53 3vq2_A TLR4, TOLL-like recepto 99.3 5.2E-12 1.8E-16 141.9 13.1 150 519-672 31-191 (606)
54 2z80_A TOLL-like receptor 2, v 99.3 3.7E-12 1.3E-16 132.8 11.0 149 520-672 52-208 (353)
55 3zyj_A Leucine-rich repeat-con 99.3 7.9E-12 2.7E-16 134.4 13.8 151 519-673 111-266 (440)
56 4fmz_A Internalin; leucine ric 99.3 1.9E-11 6.5E-16 127.0 16.1 145 519-673 65-210 (347)
57 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 116.8 13.1 120 524-647 14-137 (193)
58 1xeu_A Internalin C; cellular 99.3 5.3E-12 1.8E-16 125.6 11.0 141 522-673 21-161 (263)
59 2z66_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 129.6 10.2 152 519-672 27-209 (306)
60 3o53_A Protein LRIM1, AGAP0063 99.3 4.9E-12 1.7E-16 129.7 10.9 148 520-673 99-248 (317)
61 2qby_A CDC6 homolog 1, cell di 99.3 4.7E-11 1.6E-15 125.9 18.4 296 158-475 19-347 (386)
62 2ft3_A Biglycan; proteoglycan, 99.3 7.4E-12 2.5E-16 129.3 11.9 152 520-673 123-305 (332)
63 2xot_A Amphoterin-induced prot 99.3 1.2E-11 4.2E-16 129.2 13.6 146 523-673 21-174 (361)
64 2z80_A TOLL-like receptor 2, v 99.3 4.4E-12 1.5E-16 132.2 10.0 151 519-673 75-233 (353)
65 3oja_A Leucine-rich immune mol 99.3 5.8E-12 2E-16 137.0 11.1 148 520-673 99-248 (487)
66 2id5_A Lingo-1, leucine rich r 99.3 1.2E-11 4E-16 134.6 13.5 149 519-671 31-185 (477)
67 1njg_A DNA polymerase III subu 99.3 4.4E-11 1.5E-15 117.3 16.0 202 155-371 19-232 (250)
68 2z63_A TOLL-like receptor 4, v 99.3 1.2E-11 4E-16 137.9 13.0 151 519-673 27-188 (570)
69 1fnn_A CDC6P, cell division co 99.3 2.8E-10 9.6E-15 120.1 23.0 314 159-498 17-386 (389)
70 3v47_A TOLL-like receptor 5B a 99.3 1.3E-11 4.4E-16 133.4 12.7 133 519-653 29-170 (455)
71 3o6n_A APL1; leucine-rich repe 99.3 1.4E-11 5E-16 130.2 12.7 147 519-672 44-196 (390)
72 2je0_A Acidic leucine-rich nuc 99.3 1.3E-11 4.5E-16 111.2 10.5 123 519-645 16-149 (149)
73 3e6j_A Variable lymphocyte rec 99.3 2.8E-11 9.7E-16 117.6 13.5 127 519-647 39-170 (229)
74 2z81_A CD282 antigen, TOLL-lik 99.3 2E-11 6.7E-16 135.4 14.0 151 520-673 334-508 (549)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2.3E-11 8E-16 135.1 14.6 151 519-673 352-508 (562)
76 1a9n_A U2A', U2A'; complex (nu 99.3 9.8E-12 3.4E-16 115.6 9.6 125 519-647 18-151 (176)
77 2o6s_A Variable lymphocyte rec 99.3 3.9E-11 1.3E-15 114.8 14.1 129 519-649 27-161 (208)
78 3o6n_A APL1; leucine-rich repe 99.3 3.5E-11 1.2E-15 127.2 15.0 149 519-673 140-329 (390)
79 2v9t_B SLIT homolog 2 protein 99.3 3E-11 1E-15 116.7 13.0 127 519-647 31-163 (220)
80 3vq2_A TLR4, TOLL-like recepto 99.3 2.5E-11 8.5E-16 136.3 14.3 145 523-673 14-164 (606)
81 3oja_B Anopheles plasmodium-re 99.3 3.1E-11 1.1E-15 135.0 14.8 149 519-673 146-335 (597)
82 2v70_A SLIT-2, SLIT homolog 2 99.3 2.8E-11 9.7E-16 116.8 12.5 127 519-647 31-164 (220)
83 4glp_A Monocyte differentiatio 99.3 7.6E-12 2.6E-16 127.8 8.8 149 519-673 144-305 (310)
84 1o6v_A Internalin A; bacterial 99.3 3.8E-11 1.3E-15 130.1 14.7 101 521-626 47-147 (466)
85 3qfl_A MLA10; coiled-coil, (CC 99.2 2.2E-11 7.6E-16 103.1 9.6 75 17-100 6-81 (115)
86 1ogq_A PGIP-2, polygalacturona 99.2 1.8E-11 6.2E-16 125.2 10.9 148 520-673 149-302 (313)
87 4eco_A Uncharacterized protein 99.2 2.8E-11 9.5E-16 136.3 13.4 146 521-673 434-598 (636)
88 3oja_B Anopheles plasmodium-re 99.2 2.5E-11 8.7E-16 135.7 12.9 147 519-672 50-202 (597)
89 2id5_A Lingo-1, leucine rich r 99.2 3.3E-11 1.1E-15 131.1 13.4 149 520-672 56-210 (477)
90 1w8a_A SLIT protein; signaling 99.2 3E-11 1E-15 113.9 11.3 125 523-649 11-139 (192)
91 1wwl_A Monocyte differentiatio 99.2 1.8E-11 6.2E-16 125.1 10.2 148 520-673 149-307 (312)
92 3bz5_A Internalin-J, INLJ; leu 99.2 6.3E-11 2.2E-15 127.6 14.8 117 520-646 42-158 (457)
93 4ecn_A Leucine-rich repeat pro 99.2 6.6E-11 2.3E-15 136.2 15.8 113 559-673 688-817 (876)
94 1xku_A Decorin; proteoglycan, 99.2 9.3E-11 3.2E-15 120.9 15.5 149 520-673 121-274 (330)
95 4g8a_A TOLL-like receptor 4; l 99.2 4.6E-11 1.6E-15 134.7 14.3 143 519-665 51-200 (635)
96 4eco_A Uncharacterized protein 99.2 6.7E-11 2.3E-15 133.2 15.4 149 521-673 403-577 (636)
97 4g8a_A TOLL-like receptor 4; l 99.2 3.8E-11 1.3E-15 135.3 13.4 140 528-673 39-184 (635)
98 4ecn_A Leucine-rich repeat pro 99.2 1.5E-11 5E-16 141.6 9.8 148 519-672 447-629 (876)
99 2chg_A Replication factor C sm 99.2 1.8E-10 6.3E-15 111.1 16.0 191 156-370 14-207 (226)
100 1o6v_A Internalin A; bacterial 99.2 9.8E-11 3.4E-15 126.9 15.6 145 519-673 242-386 (466)
101 1dce_A Protein (RAB geranylger 99.2 4.1E-11 1.4E-15 132.2 12.8 104 564-669 459-567 (567)
102 3t6q_A CD180 antigen; protein- 99.2 6.3E-11 2.1E-15 133.0 14.4 151 519-673 32-190 (606)
103 2o6r_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 109.3 12.8 124 523-649 10-137 (177)
104 1ziw_A TOLL-like receptor 3; i 99.2 6.4E-11 2.2E-15 134.9 13.9 151 519-672 24-181 (680)
105 3rgz_A Protein brassinosteroid 99.2 7E-11 2.4E-15 136.2 13.9 151 519-673 393-549 (768)
106 3v47_A TOLL-like receptor 5B a 99.2 1.2E-10 4E-15 125.9 14.8 129 541-673 274-406 (455)
107 3j0a_A TOLL-like receptor 5; m 99.2 5.5E-11 1.9E-15 138.5 12.8 151 519-672 23-184 (844)
108 3rgz_A Protein brassinosteroid 99.2 8E-11 2.7E-15 135.7 13.9 81 590-672 631-714 (768)
109 2z81_A CD282 antigen, TOLL-lik 99.2 3.5E-11 1.2E-15 133.4 10.5 151 519-673 25-183 (549)
110 1wwl_A Monocyte differentiatio 99.2 4.6E-11 1.6E-15 122.1 10.6 150 519-673 94-264 (312)
111 1ziw_A TOLL-like receptor 3; i 99.2 1.1E-10 3.9E-15 132.8 14.9 107 564-672 476-594 (680)
112 3oja_A Leucine-rich immune mol 99.2 4.1E-11 1.4E-15 130.3 10.6 150 520-673 58-225 (487)
113 4b8c_D Glucose-repressible alc 99.2 8.5E-12 2.9E-16 142.1 5.4 108 540-651 222-330 (727)
114 3cvr_A Invasion plasmid antige 99.2 1.1E-10 3.9E-15 128.1 14.2 136 519-673 99-241 (571)
115 2z63_A TOLL-like receptor 4, v 99.2 4.3E-11 1.5E-15 133.2 10.8 152 519-673 372-529 (570)
116 2wfh_A SLIT homolog 2 protein 99.2 1.4E-10 4.8E-15 109.4 12.8 122 545-673 13-137 (193)
117 2ft3_A Biglycan; proteoglycan, 99.2 1.1E-10 3.9E-15 120.3 12.7 149 519-673 101-275 (332)
118 2r9u_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 108.8 10.6 104 545-654 15-122 (174)
119 2z7x_B TOLL-like receptor 1, v 99.2 9.1E-11 3.1E-15 129.1 12.7 142 523-673 3-149 (520)
120 3o53_A Protein LRIM1, AGAP0063 99.2 8.9E-12 3.1E-16 127.7 4.2 150 519-672 119-272 (317)
121 3g39_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 108.1 10.5 100 543-647 10-113 (170)
122 1w8a_A SLIT protein; signaling 99.2 1.3E-10 4.5E-15 109.5 11.6 103 569-673 30-137 (192)
123 3j0a_A TOLL-like receptor 5; m 99.2 1.1E-10 3.7E-15 136.0 13.3 144 524-673 8-159 (844)
124 3g06_A SSPH2 (leucine-rich rep 99.1 2.8E-10 9.6E-15 126.6 14.8 75 591-673 221-295 (622)
125 2o6r_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 105.4 12.8 123 544-673 9-135 (177)
126 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.9E-10 6.6E-15 127.7 13.2 143 522-673 33-180 (562)
127 4glp_A Monocyte differentiatio 99.1 1.3E-10 4.3E-15 118.7 9.9 125 541-672 144-282 (310)
128 1dce_A Protein (RAB geranylger 99.1 1.7E-10 5.9E-15 127.3 11.5 100 569-673 442-544 (567)
129 1ds9_A Outer arm dynein; leuci 99.1 5.4E-12 1.9E-16 119.8 -0.5 145 522-671 25-183 (198)
130 2ast_B S-phase kinase-associat 99.1 6.7E-11 2.3E-15 122.2 6.7 152 519-674 92-259 (336)
131 1ds9_A Outer arm dynein; leuci 99.1 5.7E-12 1.9E-16 119.7 -1.3 102 521-626 49-153 (198)
132 3bz5_A Internalin-J, INLJ; leu 99.1 6.5E-10 2.2E-14 119.7 14.6 138 521-673 86-223 (457)
133 3t6q_A CD180 antigen; protein- 99.1 6.7E-10 2.3E-14 124.6 15.3 151 520-673 278-436 (606)
134 2ast_B S-phase kinase-associat 99.1 4.4E-11 1.5E-15 123.6 5.1 153 519-672 117-282 (336)
135 3cvr_A Invasion plasmid antige 99.1 7.7E-10 2.6E-14 121.5 13.3 133 519-673 79-218 (571)
136 1sxj_B Activator 1 37 kDa subu 99.0 1.5E-09 5E-14 111.4 13.5 192 155-369 17-212 (323)
137 1jl5_A Outer protein YOPM; leu 99.0 2E-09 7E-14 115.7 15.0 123 520-653 131-253 (454)
138 1jl5_A Outer protein YOPM; leu 99.0 1.9E-09 6.4E-14 116.0 14.2 138 520-673 111-248 (454)
139 4ay9_X Follicle-stimulating ho 99.0 6.2E-10 2.1E-14 115.7 9.8 152 519-672 29-212 (350)
140 3g06_A SSPH2 (leucine-rich rep 99.0 2.4E-09 8.1E-14 119.1 15.1 132 519-672 60-191 (622)
141 2ca6_A RAN GTPase-activating p 99.0 1.4E-10 4.8E-15 122.3 4.8 153 519-673 121-314 (386)
142 2ca6_A RAN GTPase-activating p 98.9 6.6E-10 2.3E-14 117.1 6.7 154 519-673 93-285 (386)
143 2r9u_A Variable lymphocyte rec 98.9 4.9E-09 1.7E-13 96.9 11.2 108 523-633 15-125 (174)
144 3g39_A Variable lymphocyte rec 98.9 7.7E-09 2.6E-13 95.2 11.1 102 523-627 12-116 (170)
145 1iqp_A RFCS; clamp loader, ext 98.8 9.8E-09 3.4E-13 105.4 10.8 191 155-371 21-216 (327)
146 2ifg_A High affinity nerve gro 98.8 7.9E-09 2.7E-13 107.1 9.7 89 557-647 22-114 (347)
147 3goz_A Leucine-rich repeat-con 98.8 4.5E-09 1.5E-13 109.7 6.6 151 521-673 52-236 (362)
148 1hqc_A RUVB; extended AAA-ATPa 98.8 2.1E-07 7.3E-12 95.2 18.5 187 156-371 9-215 (324)
149 3goz_A Leucine-rich repeat-con 98.7 5.1E-09 1.8E-13 109.2 5.2 152 520-673 109-295 (362)
150 2chq_A Replication factor C sm 98.7 1.2E-07 4.2E-12 96.7 15.3 188 155-369 13-206 (319)
151 4ay9_X Follicle-stimulating ho 98.7 3.2E-08 1.1E-12 102.7 10.3 147 519-671 103-255 (350)
152 1z7x_W Ribonuclease inhibitor; 98.7 4.2E-09 1.4E-13 113.8 3.0 151 520-673 227-409 (461)
153 1jr3_A DNA polymerase III subu 98.7 1.8E-07 6E-12 97.9 14.9 197 157-368 14-222 (373)
154 3te6_A Regulatory protein SIR3 98.7 3.9E-07 1.3E-11 91.5 16.6 169 161-337 22-212 (318)
155 1z7x_W Ribonuclease inhibitor; 98.7 1E-08 3.5E-13 110.7 5.3 106 564-672 166-294 (461)
156 1jbk_A CLPB protein; beta barr 98.6 1.3E-07 4.5E-12 88.4 10.4 161 157-332 20-194 (195)
157 2ifg_A High affinity nerve gro 98.6 1.5E-07 5.3E-12 97.3 10.6 100 525-626 13-116 (347)
158 3h4m_A Proteasome-activating n 98.4 1.8E-06 6.3E-11 86.4 13.7 187 156-365 14-229 (285)
159 3un9_A NLR family member X1; l 98.4 7.3E-08 2.5E-12 100.5 2.8 81 567-647 154-250 (372)
160 3pvs_A Replication-associated 98.4 2.9E-06 9.9E-11 90.2 15.2 181 155-369 22-217 (447)
161 3bos_A Putative DNA replicatio 98.4 1.2E-06 4.2E-11 85.1 10.7 177 157-367 26-217 (242)
162 1sxj_D Activator 1 41 kDa subu 98.4 1.5E-06 5.1E-11 90.0 11.5 199 155-367 33-235 (353)
163 1d2n_A N-ethylmaleimide-sensit 98.4 1.1E-05 3.9E-10 80.0 17.5 186 177-388 61-264 (272)
164 3e4g_A ATP synthase subunit S, 98.3 4.1E-07 1.4E-11 82.7 5.2 85 568-652 61-155 (176)
165 1sxj_E Activator 1 40 kDa subu 98.3 3.2E-06 1.1E-10 87.6 12.2 200 155-369 10-239 (354)
166 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.8E-05 6.2E-10 78.0 17.1 184 157-361 4-215 (262)
167 3ogk_B Coronatine-insensitive 98.3 5E-07 1.7E-11 100.8 6.2 150 520-671 164-351 (592)
168 1sxj_A Activator 1 95 kDa subu 98.3 6.9E-06 2.4E-10 89.4 14.6 214 155-383 35-272 (516)
169 3un9_A NLR family member X1; l 98.2 5.1E-07 1.8E-11 94.0 4.6 151 519-673 71-250 (372)
170 3u61_B DNA polymerase accessor 98.2 8.5E-06 2.9E-10 83.2 13.5 183 155-368 22-217 (324)
171 3ogk_B Coronatine-insensitive 98.2 7E-07 2.4E-11 99.5 5.9 130 541-673 377-524 (592)
172 3sb4_A Hypothetical leucine ri 98.2 2E-06 6.9E-11 88.1 8.8 75 591-669 226-304 (329)
173 1sxj_C Activator 1 40 kDa subu 98.2 1.2E-05 4.1E-10 82.7 14.5 183 155-362 21-207 (340)
174 3d8b_A Fidgetin-like protein 1 98.2 2.3E-05 7.9E-10 81.0 16.7 187 157-368 82-296 (357)
175 3sb4_A Hypothetical leucine ri 98.2 2.3E-06 7.7E-11 87.8 8.9 99 567-669 225-328 (329)
176 3uk6_A RUVB-like 2; hexameric 98.2 1.5E-05 5E-10 83.0 14.4 49 158-206 43-96 (368)
177 1xwi_A SKD1 protein; VPS4B, AA 98.2 6.5E-05 2.2E-09 76.3 18.3 190 157-367 10-223 (322)
178 1a5t_A Delta prime, HOLB; zinc 98.2 3E-05 1E-09 79.3 15.8 171 164-366 7-204 (334)
179 3eie_A Vacuolar protein sortin 98.1 3.8E-05 1.3E-09 78.2 15.9 189 156-366 15-227 (322)
180 3b9p_A CG5977-PA, isoform A; A 98.1 0.00011 3.8E-09 73.8 18.9 189 156-366 18-232 (297)
181 3vfd_A Spastin; ATPase, microt 98.1 7.2E-05 2.5E-09 78.3 18.0 189 156-366 112-325 (389)
182 3pfi_A Holliday junction ATP-d 98.1 2.1E-05 7.3E-10 80.7 13.6 182 156-367 26-227 (338)
183 3syl_A Protein CBBX; photosynt 98.1 7.9E-06 2.7E-10 82.8 10.2 154 160-337 32-218 (309)
184 3pxg_A Negative regulator of g 98.1 1.9E-05 6.4E-10 84.8 13.6 151 157-337 178-339 (468)
185 2p65_A Hypothetical protein PF 98.1 6.7E-06 2.3E-10 76.2 8.8 50 157-206 20-69 (187)
186 2z4s_A Chromosomal replication 98.1 4E-05 1.4E-09 81.5 15.3 186 157-365 103-304 (440)
187 2p1m_B Transport inhibitor res 98.1 1.9E-06 6.4E-11 96.1 5.0 84 587-673 428-517 (594)
188 2p1m_B Transport inhibitor res 98.1 6.9E-07 2.3E-11 99.6 1.4 151 519-671 155-347 (594)
189 1qvr_A CLPB protein; coiled co 98.0 2.4E-05 8.3E-10 90.6 13.4 186 156-357 167-369 (854)
190 1io0_A Tropomodulin; LRR prote 98.0 5.6E-06 1.9E-10 76.9 6.4 84 564-647 61-162 (185)
191 3cf0_A Transitional endoplasmi 98.0 0.00012 4.3E-09 73.6 16.7 183 157-362 13-223 (301)
192 2zan_A Vacuolar protein sortin 98.0 0.00014 4.9E-09 77.3 17.9 186 156-366 131-344 (444)
193 2qp9_X Vacuolar protein sortin 98.0 9.8E-05 3.3E-09 76.2 15.6 189 157-367 49-261 (355)
194 4b4t_J 26S protease regulatory 98.0 0.00018 6.1E-09 74.1 17.1 182 156-360 145-354 (405)
195 3e4g_A ATP synthase subunit S, 97.9 6.1E-06 2.1E-10 74.9 4.6 85 541-627 60-154 (176)
196 2ra8_A Uncharacterized protein 97.9 1.8E-05 6.2E-10 81.6 8.6 126 540-673 170-318 (362)
197 4b4t_L 26S protease subunit RP 97.9 8.1E-05 2.8E-09 77.9 13.0 182 156-360 178-387 (437)
198 1l8q_A Chromosomal replication 97.9 4.7E-05 1.6E-09 77.6 11.1 167 167-361 22-202 (324)
199 4b4t_H 26S protease regulatory 97.9 0.00016 5.6E-09 75.5 15.0 181 157-360 207-415 (467)
200 4b4t_M 26S protease regulatory 97.9 8.8E-05 3E-09 77.6 12.4 182 155-359 177-386 (434)
201 4b4t_I 26S protease regulatory 97.9 0.00038 1.3E-08 72.0 16.8 182 156-360 179-388 (437)
202 1io0_A Tropomodulin; LRR prote 97.8 1.3E-05 4.5E-10 74.4 4.5 110 561-673 29-162 (185)
203 3rw6_A Nuclear RNA export fact 97.8 2.7E-05 9.2E-10 76.2 6.7 62 565-626 167-233 (267)
204 3pxi_A Negative regulator of g 97.8 0.00013 4.6E-09 83.3 13.6 151 157-337 178-339 (758)
205 3ec2_A DNA replication protein 97.8 2.2E-05 7.4E-10 72.6 5.7 90 164-271 19-111 (180)
206 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00036 1.2E-08 79.8 16.6 166 156-336 183-362 (758)
207 3rw6_A Nuclear RNA export fact 97.8 3.4E-05 1.1E-09 75.6 6.8 83 588-672 167-261 (267)
208 2w58_A DNAI, primosome compone 97.7 9.3E-05 3.2E-09 69.6 9.6 90 164-272 34-127 (202)
209 2ra8_A Uncharacterized protein 97.7 2.8E-05 9.7E-10 80.2 6.3 127 519-647 171-318 (362)
210 2gno_A DNA polymerase III, gam 97.7 0.00011 3.8E-09 73.8 10.4 146 163-336 1-152 (305)
211 4b4t_K 26S protease regulatory 97.7 0.00051 1.7E-08 71.8 15.8 182 156-360 169-379 (428)
212 1lv7_A FTSH; alpha/beta domain 97.7 0.0013 4.5E-08 64.3 17.7 185 156-363 9-221 (257)
213 2r62_A Cell division protease 97.6 1.9E-05 6.5E-10 78.1 2.3 48 158-205 10-69 (268)
214 4fdw_A Leucine rich hypothetic 97.6 0.00041 1.4E-08 72.7 12.1 123 540-672 224-355 (401)
215 3n70_A Transport activator; si 97.5 3.3E-05 1.1E-09 68.5 2.8 46 160-205 2-49 (145)
216 4fdw_A Leucine rich hypothetic 97.5 0.0003 1E-08 73.7 10.4 141 521-670 227-378 (401)
217 2ce7_A Cell division protein F 97.5 0.00085 2.9E-08 71.3 13.6 181 157-360 14-221 (476)
218 1in4_A RUVB, holliday junction 97.4 0.0044 1.5E-07 63.1 17.8 182 156-367 22-223 (334)
219 3hu3_A Transitional endoplasmi 97.4 0.00098 3.3E-08 71.4 13.2 175 157-359 202-406 (489)
220 1ofh_A ATP-dependent HSL prote 97.4 0.001 3.5E-08 67.0 12.0 46 160-205 16-75 (310)
221 4fcw_A Chaperone protein CLPB; 97.3 0.00045 1.5E-08 69.7 8.3 105 160-272 18-131 (311)
222 3cf2_A TER ATPase, transitiona 97.2 0.00072 2.5E-08 76.2 9.8 180 158-360 203-407 (806)
223 2c9o_A RUVB-like 1; hexameric 97.2 0.0029 9.8E-08 67.5 13.6 48 158-205 36-88 (456)
224 2kjq_A DNAA-related protein; s 97.0 0.00049 1.7E-08 61.0 4.2 40 179-220 35-74 (149)
225 3m6a_A ATP-dependent protease 97.0 0.0034 1.2E-07 68.4 11.7 46 160-205 82-133 (543)
226 1ixz_A ATP-dependent metallopr 96.9 0.023 7.9E-07 55.1 15.7 49 157-205 14-74 (254)
227 3io5_A Recombination and repai 96.8 0.0056 1.9E-07 60.6 10.6 86 182-272 30-123 (333)
228 1n0w_A DNA repair protein RAD5 96.8 0.0057 2E-07 58.9 10.7 91 180-271 24-130 (243)
229 3pxi_A Negative regulator of g 96.8 0.0012 4.1E-08 75.4 6.6 156 159-336 491-675 (758)
230 3hr8_A Protein RECA; alpha and 96.8 0.0058 2E-07 62.2 10.6 85 180-271 61-150 (356)
231 2cvh_A DNA repair and recombin 96.7 0.0069 2.4E-07 57.3 10.2 85 180-271 20-116 (220)
232 2x8a_A Nuclear valosin-contain 96.7 0.0069 2.4E-07 59.6 10.0 160 157-337 8-192 (274)
233 2z43_A DNA repair and recombin 96.6 0.012 4E-07 59.6 11.8 90 180-270 107-213 (324)
234 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0035 1.2E-07 59.9 7.5 47 180-230 23-69 (235)
235 1v5w_A DMC1, meiotic recombina 96.6 0.013 4.5E-07 59.7 11.8 90 180-270 122-229 (343)
236 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0015 5E-08 65.0 4.4 68 181-271 124-193 (331)
237 2i1q_A DNA repair and recombin 96.5 0.0074 2.5E-07 61.1 9.7 90 180-270 98-214 (322)
238 2zr9_A Protein RECA, recombina 96.5 0.01 3.5E-07 60.5 10.6 85 180-271 61-150 (349)
239 2dhr_A FTSH; AAA+ protein, hex 96.4 0.031 1.1E-06 59.7 13.9 177 157-360 29-236 (499)
240 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0053 1.8E-07 70.1 8.5 102 160-272 459-569 (758)
241 1xp8_A RECA protein, recombina 96.4 0.014 4.7E-07 59.9 10.6 85 180-271 74-163 (366)
242 1u94_A RECA protein, recombina 96.3 0.015 5.2E-07 59.3 10.3 85 180-271 63-152 (356)
243 3t15_A Ribulose bisphosphate c 96.3 0.003 1E-07 63.0 4.6 27 179-205 35-61 (293)
244 2qgz_A Helicase loader, putati 96.2 0.0083 2.8E-07 60.2 7.5 54 163-218 132-189 (308)
245 1ypw_A Transitional endoplasmi 96.2 0.0073 2.5E-07 69.0 7.7 160 157-337 202-386 (806)
246 3lda_A DNA repair protein RAD5 96.2 0.02 6.7E-07 59.4 10.3 91 180-271 178-284 (400)
247 1iy2_A ATP-dependent metallopr 96.1 0.024 8.1E-07 55.9 10.1 50 156-205 37-98 (278)
248 2xxa_A Signal recognition part 96.0 0.26 8.7E-06 51.7 18.1 90 179-269 99-192 (433)
249 4a74_A DNA repair and recombin 96.0 0.032 1.1E-06 53.0 10.5 91 180-271 25-136 (231)
250 2px0_A Flagellar biosynthesis 96.0 0.026 9E-07 56.1 9.9 86 179-268 104-190 (296)
251 1rz3_A Hypothetical protein rb 95.9 0.0081 2.8E-07 56.1 5.7 44 163-206 2-48 (201)
252 4akg_A Glutathione S-transfera 95.9 0.092 3.1E-06 66.9 16.3 79 181-270 1268-1346(2695)
253 3ice_A Transcription terminati 95.8 0.0093 3.2E-07 60.6 5.8 98 170-272 163-273 (422)
254 3kl4_A SRP54, signal recogniti 95.7 0.23 8E-06 51.7 16.2 88 179-269 96-188 (433)
255 3c8u_A Fructokinase; YP_612366 95.7 0.012 3.9E-07 55.4 5.7 53 165-219 5-59 (208)
256 3co5_A Putative two-component 95.6 0.0028 9.5E-08 55.7 1.0 45 160-204 5-51 (143)
257 1jr3_D DNA polymerase III, del 95.6 0.094 3.2E-06 53.3 12.4 163 174-366 12-184 (343)
258 3bh0_A DNAB-like replicative h 95.5 0.052 1.8E-06 54.5 10.2 51 180-234 68-118 (315)
259 3dm5_A SRP54, signal recogniti 95.5 0.074 2.5E-06 55.6 11.4 29 179-207 99-127 (443)
260 1sky_E F1-ATPase, F1-ATP synth 95.5 0.023 7.8E-07 59.6 7.6 90 181-271 152-256 (473)
261 3rfe_A Platelet glycoprotein I 95.5 0.017 5.7E-07 49.6 5.3 52 594-647 11-66 (130)
262 1qvr_A CLPB protein; coiled co 95.4 0.022 7.4E-07 65.9 7.6 46 160-205 559-613 (854)
263 2dr3_A UPF0273 protein PH0284; 95.3 0.067 2.3E-06 51.3 10.0 47 180-230 23-69 (247)
264 3cf2_A TER ATPase, transitiona 95.3 0.028 9.5E-07 63.4 8.0 94 158-272 476-582 (806)
265 2bjv_A PSP operon transcriptio 95.3 0.011 3.6E-07 58.0 4.2 61 158-220 5-67 (265)
266 2ehv_A Hypothetical protein PH 95.3 0.031 1.1E-06 53.9 7.6 23 180-202 30-52 (251)
267 2ck3_D ATP synthase subunit be 95.3 0.09 3.1E-06 55.0 11.2 100 171-271 143-264 (482)
268 1pzn_A RAD51, DNA repair and r 95.3 0.051 1.8E-06 55.4 9.3 92 179-271 130-242 (349)
269 1qhx_A CPT, protein (chloramph 95.3 0.011 3.9E-07 53.7 3.9 25 181-205 4-28 (178)
270 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.9E-07 53.3 3.8 25 181-205 2-26 (173)
271 1fx0_B ATP synthase beta chain 95.2 0.07 2.4E-06 56.1 9.8 100 171-271 155-277 (498)
272 3vaa_A Shikimate kinase, SK; s 95.2 0.013 4.5E-07 54.5 4.0 27 179-205 24-50 (199)
273 2hf9_A Probable hydrogenase ni 95.1 0.021 7.2E-07 54.2 5.5 39 167-205 25-63 (226)
274 3lw7_A Adenylate kinase relate 95.1 0.012 4E-07 53.3 3.5 20 181-200 2-21 (179)
275 1g8p_A Magnesium-chelatase 38 95.1 0.011 3.9E-07 60.3 3.7 50 156-205 21-70 (350)
276 4h09_A Hypothetical leucine ri 95.0 0.081 2.8E-06 54.6 9.9 111 540-657 238-352 (379)
277 1ly1_A Polynucleotide kinase; 95.0 0.014 4.9E-07 53.1 3.6 22 181-202 3-24 (181)
278 2r44_A Uncharacterized protein 94.9 0.039 1.3E-06 55.8 7.2 44 160-205 28-71 (331)
279 3trf_A Shikimate kinase, SK; a 94.9 0.016 5.5E-07 53.1 3.9 26 180-205 5-30 (185)
280 1zp6_A Hypothetical protein AT 94.9 0.015 5.2E-07 53.6 3.7 24 180-203 9-32 (191)
281 2ga8_A Hypothetical 39.9 kDa p 94.9 0.032 1.1E-06 56.3 6.1 43 163-205 3-49 (359)
282 1kag_A SKI, shikimate kinase I 94.9 0.014 4.9E-07 52.7 3.3 25 181-205 5-29 (173)
283 4eun_A Thermoresistant glucoki 94.9 0.018 6.1E-07 53.7 4.0 27 178-204 27-53 (200)
284 1kgd_A CASK, peripheral plasma 94.8 0.016 5.4E-07 53.0 3.5 26 180-205 5-30 (180)
285 3uie_A Adenylyl-sulfate kinase 94.8 0.019 6.4E-07 53.5 4.1 29 177-205 22-50 (200)
286 3cmu_A Protein RECA, recombina 94.8 0.075 2.6E-06 65.4 10.1 85 179-270 1426-1515(2050)
287 2wsm_A Hydrogenase expression/ 94.8 0.022 7.6E-07 53.8 4.6 42 164-205 14-55 (221)
288 2rhm_A Putative kinase; P-loop 94.8 0.02 6.7E-07 52.8 4.1 26 180-205 5-30 (193)
289 3t61_A Gluconokinase; PSI-biol 94.7 0.016 5.6E-07 54.0 3.5 26 180-205 18-43 (202)
290 4a1f_A DNAB helicase, replicat 94.7 0.14 4.8E-06 51.6 10.4 51 180-234 46-96 (338)
291 1j8m_F SRP54, signal recogniti 94.7 0.2 6.9E-06 49.6 11.4 88 180-269 98-189 (297)
292 1nks_A Adenylate kinase; therm 94.7 0.019 6.5E-07 52.9 3.7 25 181-205 2-26 (194)
293 1ls1_A Signal recognition part 94.7 0.13 4.6E-06 50.9 10.1 88 179-269 97-189 (295)
294 1vma_A Cell division protein F 94.7 0.076 2.6E-06 52.9 8.2 87 179-269 103-195 (306)
295 3iij_A Coilin-interacting nucl 94.7 0.019 6.6E-07 52.3 3.6 26 180-205 11-36 (180)
296 1xjc_A MOBB protein homolog; s 94.6 0.025 8.7E-07 50.8 4.2 28 179-206 3-30 (169)
297 1kht_A Adenylate kinase; phosp 94.6 0.021 7.3E-07 52.5 3.8 25 181-205 4-28 (192)
298 1odf_A YGR205W, hypothetical 3 94.6 0.041 1.4E-06 54.4 6.0 55 178-232 29-84 (290)
299 1zuh_A Shikimate kinase; alpha 94.5 0.023 7.9E-07 51.1 3.8 27 179-205 6-32 (168)
300 2yvu_A Probable adenylyl-sulfa 94.5 0.025 8.7E-07 51.8 4.1 28 179-206 12-39 (186)
301 1via_A Shikimate kinase; struc 94.5 0.021 7E-07 51.9 3.3 25 181-205 5-29 (175)
302 1gvn_B Zeta; postsegregational 94.4 0.037 1.3E-06 54.7 5.4 26 179-204 32-57 (287)
303 2c95_A Adenylate kinase 1; tra 94.4 0.027 9.2E-07 52.0 4.1 27 179-205 8-34 (196)
304 1knq_A Gluconate kinase; ALFA/ 94.4 0.028 9.5E-07 50.9 4.1 25 180-204 8-32 (175)
305 2qor_A Guanylate kinase; phosp 94.4 0.023 7.7E-07 53.1 3.5 26 180-205 12-37 (204)
306 3tau_A Guanylate kinase, GMP k 94.4 0.026 8.9E-07 52.9 3.9 27 179-205 7-33 (208)
307 1tev_A UMP-CMP kinase; ploop, 94.4 0.025 8.7E-07 52.1 3.8 26 180-205 3-28 (196)
308 3tr0_A Guanylate kinase, GMP k 94.4 0.026 9E-07 52.6 3.9 25 180-204 7-31 (205)
309 2jaq_A Deoxyguanosine kinase; 94.4 0.025 8.5E-07 52.6 3.7 24 182-205 2-25 (205)
310 2j37_W Signal recognition part 94.3 0.36 1.2E-05 51.5 13.0 28 179-206 100-127 (504)
311 2ze6_A Isopentenyl transferase 94.3 0.025 8.4E-07 54.9 3.7 25 181-205 2-26 (253)
312 1ojl_A Transcriptional regulat 94.3 0.031 1E-06 55.9 4.5 46 160-205 3-50 (304)
313 1uf9_A TT1252 protein; P-loop, 94.3 0.027 9.3E-07 52.3 3.9 26 178-203 6-31 (203)
314 1y63_A LMAJ004144AAA protein; 94.3 0.03 1E-06 51.3 4.1 25 179-203 9-33 (184)
315 3a00_A Guanylate kinase, GMP k 94.3 0.023 7.8E-07 52.2 3.2 25 181-205 2-26 (186)
316 3umf_A Adenylate kinase; rossm 94.3 0.03 1E-06 52.7 4.0 28 178-205 27-54 (217)
317 2iyv_A Shikimate kinase, SK; t 94.3 0.023 7.8E-07 52.0 3.2 25 181-205 3-27 (184)
318 1ukz_A Uridylate kinase; trans 94.3 0.03 1E-06 52.1 4.1 27 179-205 14-40 (203)
319 2bdt_A BH3686; alpha-beta prot 94.3 0.025 8.7E-07 52.0 3.5 22 181-202 3-24 (189)
320 2j41_A Guanylate kinase; GMP, 94.2 0.03 1E-06 52.3 4.0 25 180-204 6-30 (207)
321 3asz_A Uridine kinase; cytidin 94.2 0.028 9.5E-07 52.7 3.7 27 179-205 5-31 (211)
322 4gt6_A Cell surface protein; l 94.2 0.18 6.2E-06 52.3 10.4 102 540-647 263-368 (394)
323 3hws_A ATP-dependent CLP prote 94.2 0.045 1.5E-06 56.3 5.6 45 161-205 17-76 (363)
324 4fs7_A Uncharacterized protein 94.2 0.25 8.7E-06 51.1 11.4 120 540-669 251-373 (394)
325 1ye8_A Protein THEP1, hypothet 94.2 0.032 1.1E-06 50.8 3.9 25 182-206 2-26 (178)
326 2bbw_A Adenylate kinase 4, AK4 94.2 0.031 1.1E-06 53.9 4.0 27 179-205 26-52 (246)
327 3rfe_A Platelet glycoprotein I 94.1 0.075 2.6E-06 45.5 6.0 51 572-624 12-66 (130)
328 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.028 9.4E-07 60.1 3.9 44 160-205 23-66 (500)
329 2bwj_A Adenylate kinase 5; pho 94.1 0.031 1.1E-06 51.7 3.9 26 180-205 12-37 (199)
330 1e6c_A Shikimate kinase; phosp 94.1 0.027 9.4E-07 50.8 3.3 25 181-205 3-27 (173)
331 2plr_A DTMP kinase, probable t 94.1 0.033 1.1E-06 52.1 4.0 26 181-206 5-30 (213)
332 2if2_A Dephospho-COA kinase; a 94.1 0.029 9.8E-07 52.3 3.5 22 181-202 2-23 (204)
333 1pgv_A TMD-1, tropomodulin TMD 94.1 0.082 2.8E-06 48.6 6.4 59 564-622 66-135 (197)
334 1cke_A CK, MSSA, protein (cyti 94.1 0.03 1E-06 53.1 3.7 25 181-205 6-30 (227)
335 3tqc_A Pantothenate kinase; bi 94.1 0.048 1.6E-06 54.6 5.2 43 163-205 71-117 (321)
336 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.032 1.1E-06 54.4 3.9 26 180-205 4-29 (260)
337 3cm0_A Adenylate kinase; ATP-b 94.0 0.032 1.1E-06 51.0 3.7 25 181-205 5-29 (186)
338 2cdn_A Adenylate kinase; phosp 94.0 0.038 1.3E-06 51.4 4.2 26 180-205 20-45 (201)
339 1lvg_A Guanylate kinase, GMP k 94.0 0.027 9.1E-07 52.4 3.1 26 180-205 4-29 (198)
340 3tlx_A Adenylate kinase 2; str 94.0 0.068 2.3E-06 51.4 6.1 28 178-205 27-54 (243)
341 1uj2_A Uridine-cytidine kinase 94.0 0.034 1.2E-06 53.9 3.9 28 178-205 20-47 (252)
342 2vli_A Antibiotic resistance p 93.9 0.023 7.9E-07 51.8 2.5 26 180-205 5-30 (183)
343 2qt1_A Nicotinamide riboside k 93.9 0.032 1.1E-06 52.2 3.6 26 179-204 20-45 (207)
344 1um8_A ATP-dependent CLP prote 93.9 0.056 1.9E-06 55.8 5.7 26 180-205 72-97 (376)
345 2p5t_B PEZT; postsegregational 93.9 0.046 1.6E-06 52.9 4.7 27 179-205 31-57 (253)
346 2b8t_A Thymidine kinase; deoxy 93.9 0.028 9.5E-07 53.1 3.0 88 179-271 11-100 (223)
347 1qf9_A UMP/CMP kinase, protein 93.9 0.037 1.3E-06 50.9 3.8 26 180-205 6-31 (194)
348 3fwy_A Light-independent proto 93.9 0.041 1.4E-06 55.1 4.3 41 178-220 46-86 (314)
349 1aky_A Adenylate kinase; ATP:A 93.9 0.039 1.3E-06 52.1 4.0 26 180-205 4-29 (220)
350 3ney_A 55 kDa erythrocyte memb 93.8 0.04 1.4E-06 50.9 3.9 27 179-205 18-44 (197)
351 2pt5_A Shikimate kinase, SK; a 93.8 0.038 1.3E-06 49.5 3.7 24 182-205 2-25 (168)
352 1rj9_A FTSY, signal recognitio 93.8 0.047 1.6E-06 54.4 4.5 28 179-206 101-128 (304)
353 2wwf_A Thymidilate kinase, put 93.8 0.042 1.4E-06 51.4 4.0 32 180-212 10-41 (212)
354 1nn5_A Similar to deoxythymidy 93.7 0.045 1.5E-06 51.3 4.2 32 180-212 9-40 (215)
355 2ffh_A Protein (FFH); SRP54, s 93.7 0.3 1E-05 50.8 10.7 87 179-269 97-189 (425)
356 4gp7_A Metallophosphoesterase; 93.7 0.03 1E-06 50.6 2.8 23 179-201 8-30 (171)
357 1jjv_A Dephospho-COA kinase; P 93.7 0.033 1.1E-06 52.0 3.2 22 181-202 3-24 (206)
358 2pbr_A DTMP kinase, thymidylat 93.7 0.041 1.4E-06 50.6 3.7 24 182-205 2-25 (195)
359 1ex7_A Guanylate kinase; subst 93.7 0.037 1.3E-06 50.7 3.3 25 181-205 2-26 (186)
360 1zak_A Adenylate kinase; ATP:A 93.7 0.041 1.4E-06 52.1 3.7 27 179-205 4-30 (222)
361 3l0o_A Transcription terminati 93.7 0.027 9.4E-07 57.1 2.6 51 170-221 164-216 (427)
362 1gtv_A TMK, thymidylate kinase 93.6 0.026 8.8E-07 53.1 2.2 26 181-206 1-26 (214)
363 1zd8_A GTP:AMP phosphotransfer 93.6 0.041 1.4E-06 52.3 3.7 26 180-205 7-32 (227)
364 1znw_A Guanylate kinase, GMP k 93.6 0.04 1.4E-06 51.5 3.5 27 179-205 19-45 (207)
365 4e22_A Cytidylate kinase; P-lo 93.6 0.048 1.6E-06 52.8 4.1 27 179-205 26-52 (252)
366 3aez_A Pantothenate kinase; tr 93.6 0.043 1.5E-06 54.9 3.9 42 178-219 88-129 (312)
367 3cmw_A Protein RECA, recombina 93.5 0.18 6.3E-06 61.3 9.8 87 179-272 382-473 (1706)
368 1g5t_A COB(I)alamin adenosyltr 93.5 0.067 2.3E-06 49.0 4.7 119 180-306 28-164 (196)
369 2z0h_A DTMP kinase, thymidylat 93.5 0.13 4.3E-06 47.4 6.8 25 182-206 2-26 (197)
370 1htw_A HI0065; nucleotide-bind 93.5 0.046 1.6E-06 48.6 3.5 27 178-204 31-57 (158)
371 2grj_A Dephospho-COA kinase; T 93.5 0.047 1.6E-06 50.4 3.7 26 179-204 11-36 (192)
372 4h09_A Hypothetical leucine ri 93.5 0.22 7.7E-06 51.2 9.4 122 540-669 215-340 (379)
373 1z6g_A Guanylate kinase; struc 93.4 0.042 1.4E-06 51.9 3.4 26 179-204 22-47 (218)
374 3e70_C DPA, signal recognition 93.4 0.098 3.4E-06 52.6 6.2 58 178-237 127-185 (328)
375 2jeo_A Uridine-cytidine kinase 93.4 0.049 1.7E-06 52.5 3.9 26 179-204 24-49 (245)
376 3fb4_A Adenylate kinase; psych 93.4 0.049 1.7E-06 51.2 3.7 24 182-205 2-25 (216)
377 2f1r_A Molybdopterin-guanine d 93.3 0.045 1.6E-06 49.4 3.3 28 180-207 2-29 (171)
378 3cmu_A Protein RECA, recombina 93.3 0.22 7.4E-06 61.5 9.9 87 179-272 382-473 (2050)
379 3vr4_D V-type sodium ATPase su 93.2 0.079 2.7E-06 55.1 5.3 99 171-271 141-259 (465)
380 2i3b_A HCR-ntpase, human cance 93.2 0.049 1.7E-06 50.1 3.4 25 181-205 2-26 (189)
381 1m7g_A Adenylylsulfate kinase; 93.2 0.059 2E-06 50.5 4.1 28 178-205 23-50 (211)
382 2v54_A DTMP kinase, thymidylat 93.2 0.053 1.8E-06 50.4 3.6 25 180-204 4-28 (204)
383 2r6a_A DNAB helicase, replicat 93.1 0.25 8.6E-06 52.3 9.2 50 180-232 203-252 (454)
384 3cmw_A Protein RECA, recombina 93.1 0.23 8E-06 60.3 9.8 84 180-270 1431-1519(1706)
385 3dl0_A Adenylate kinase; phosp 93.1 0.054 1.8E-06 51.0 3.6 24 182-205 2-25 (216)
386 1np6_A Molybdopterin-guanine d 93.0 0.07 2.4E-06 48.2 4.0 28 179-206 5-32 (174)
387 2zts_A Putative uncharacterize 93.0 0.22 7.4E-06 47.7 7.9 49 180-231 30-78 (251)
388 3p32_A Probable GTPase RV1496/ 93.0 0.13 4.4E-06 52.6 6.5 39 168-206 65-105 (355)
389 1s96_A Guanylate kinase, GMP k 93.0 0.062 2.1E-06 50.7 3.8 27 179-205 15-41 (219)
390 2c61_A A-type ATP synthase non 93.0 0.088 3E-06 55.1 5.2 101 171-271 142-260 (469)
391 1pgv_A TMD-1, tropomodulin TMD 93.0 0.083 2.8E-06 48.6 4.5 108 563-672 36-167 (197)
392 3nwj_A ATSK2; P loop, shikimat 92.9 0.054 1.9E-06 52.2 3.4 26 180-205 48-73 (250)
393 3hjn_A DTMP kinase, thymidylat 92.9 0.26 8.7E-06 45.6 7.9 49 182-232 2-50 (197)
394 3b9q_A Chloroplast SRP recepto 92.9 0.069 2.3E-06 53.2 4.2 28 179-206 99-126 (302)
395 2pez_A Bifunctional 3'-phospho 92.9 0.071 2.4E-06 48.4 4.0 27 180-206 5-31 (179)
396 1tue_A Replication protein E1; 92.9 0.098 3.4E-06 48.2 4.8 38 168-205 45-83 (212)
397 1vht_A Dephospho-COA kinase; s 92.9 0.067 2.3E-06 50.4 3.9 23 180-202 4-26 (218)
398 1g41_A Heat shock protein HSLU 92.9 0.074 2.5E-06 55.6 4.4 46 160-205 16-75 (444)
399 3mfy_A V-type ATP synthase alp 92.9 0.12 4E-06 54.9 5.9 97 171-271 217-335 (588)
400 3be4_A Adenylate kinase; malar 92.8 0.062 2.1E-06 50.7 3.5 25 181-205 6-30 (217)
401 2q6t_A DNAB replication FORK h 92.8 0.36 1.2E-05 50.9 9.8 51 180-233 200-250 (444)
402 3sr0_A Adenylate kinase; phosp 92.8 0.069 2.4E-06 49.8 3.7 24 182-205 2-25 (206)
403 2onk_A Molybdate/tungstate ABC 92.8 0.065 2.2E-06 51.4 3.6 27 178-205 23-49 (240)
404 3upu_A ATP-dependent DNA helic 92.8 0.22 7.4E-06 52.9 8.1 44 163-207 29-72 (459)
405 1cr0_A DNA primase/helicase; R 92.8 0.2 6.8E-06 49.7 7.4 51 179-232 34-84 (296)
406 2f6r_A COA synthase, bifunctio 92.8 0.066 2.2E-06 52.8 3.7 24 179-202 74-97 (281)
407 3r20_A Cytidylate kinase; stru 92.7 0.074 2.5E-06 50.5 3.9 26 180-205 9-34 (233)
408 3gqb_B V-type ATP synthase bet 92.7 0.096 3.3E-06 54.4 4.9 101 171-271 137-262 (464)
409 3k1j_A LON protease, ATP-depen 92.7 0.067 2.3E-06 59.1 4.1 47 157-205 39-85 (604)
410 1ak2_A Adenylate kinase isoenz 92.6 0.084 2.9E-06 50.3 4.2 26 180-205 16-41 (233)
411 1e4v_A Adenylate kinase; trans 92.5 0.075 2.6E-06 49.9 3.7 24 182-205 2-25 (214)
412 1q57_A DNA primase/helicase; d 92.5 0.48 1.6E-05 50.9 10.5 56 180-238 242-298 (503)
413 2xb4_A Adenylate kinase; ATP-b 92.5 0.076 2.6E-06 50.3 3.7 24 182-205 2-25 (223)
414 3ake_A Cytidylate kinase; CMP 92.5 0.078 2.7E-06 49.4 3.7 25 181-205 3-27 (208)
415 4fs7_A Uncharacterized protein 92.4 0.76 2.6E-05 47.5 11.7 123 540-670 228-351 (394)
416 1sq5_A Pantothenate kinase; P- 92.4 0.078 2.7E-06 53.0 3.9 28 178-205 78-105 (308)
417 4eaq_A DTMP kinase, thymidylat 92.4 0.17 5.7E-06 48.1 5.9 28 179-206 25-52 (229)
418 3d3q_A TRNA delta(2)-isopenten 92.3 0.079 2.7E-06 53.3 3.7 25 181-205 8-32 (340)
419 3lnc_A Guanylate kinase, GMP k 92.3 0.049 1.7E-06 51.9 2.1 25 180-204 27-52 (231)
420 2pcj_A ABC transporter, lipopr 92.3 0.063 2.2E-06 50.9 2.8 26 180-205 30-55 (224)
421 2og2_A Putative signal recogni 92.2 0.09 3.1E-06 53.5 4.0 28 179-206 156-183 (359)
422 2yhs_A FTSY, cell division pro 92.2 0.16 5.4E-06 53.7 6.0 42 179-223 292-333 (503)
423 1yrb_A ATP(GTP)binding protein 92.2 0.1 3.5E-06 50.6 4.4 27 179-205 13-39 (262)
424 3tif_A Uncharacterized ABC tra 92.2 0.075 2.6E-06 50.8 3.2 27 179-205 30-56 (235)
425 3end_A Light-independent proto 92.2 0.19 6.6E-06 50.0 6.5 43 177-221 38-80 (307)
426 3b85_A Phosphate starvation-in 92.1 0.062 2.1E-06 50.2 2.5 24 180-203 22-45 (208)
427 3vkg_A Dynein heavy chain, cyt 92.1 1.5 5.2E-05 56.7 15.5 227 183-472 1307-1575(3245)
428 1zu4_A FTSY; GTPase, signal re 92.0 0.11 3.8E-06 52.1 4.4 38 179-218 104-141 (320)
429 1oix_A RAS-related protein RAB 92.0 0.09 3.1E-06 48.3 3.4 25 180-204 29-53 (191)
430 3vr4_A V-type sodium ATPase ca 91.9 0.19 6.4E-06 53.6 6.0 96 171-270 222-339 (600)
431 4gt6_A Cell surface protein; l 91.9 0.52 1.8E-05 48.8 9.6 106 561-671 258-366 (394)
432 3lv8_A DTMP kinase, thymidylat 91.9 0.3 1E-05 46.5 7.0 37 180-217 27-63 (236)
433 3crm_A TRNA delta(2)-isopenten 91.9 0.096 3.3E-06 52.3 3.6 26 180-205 5-30 (323)
434 4tmk_A Protein (thymidylate ki 91.8 0.29 1E-05 45.7 6.8 52 181-233 4-55 (213)
435 2d2e_A SUFC protein; ABC-ATPas 91.8 0.092 3.1E-06 50.7 3.4 24 180-203 29-52 (250)
436 2cbz_A Multidrug resistance-as 91.8 0.088 3E-06 50.3 3.2 27 179-205 30-56 (237)
437 3bgw_A DNAB-like replicative h 91.8 0.52 1.8E-05 49.6 9.4 50 180-233 197-246 (444)
438 3gfo_A Cobalt import ATP-bindi 91.8 0.078 2.7E-06 51.9 2.9 26 180-205 34-59 (275)
439 3exa_A TRNA delta(2)-isopenten 91.7 0.1 3.5E-06 51.6 3.6 25 180-204 3-27 (322)
440 1b0u_A Histidine permease; ABC 91.7 0.09 3.1E-06 51.1 3.2 27 179-205 31-57 (262)
441 1sgw_A Putative ABC transporte 91.7 0.072 2.5E-06 50.0 2.4 26 180-205 35-60 (214)
442 1ji0_A ABC transporter; ATP bi 91.7 0.083 2.8E-06 50.6 2.9 26 180-205 32-57 (240)
443 3a8t_A Adenylate isopentenyltr 91.6 0.09 3.1E-06 52.7 3.2 27 179-205 39-65 (339)
444 4g1u_C Hemin import ATP-bindin 91.6 0.084 2.9E-06 51.4 2.9 27 179-205 36-62 (266)
445 1g6h_A High-affinity branched- 91.6 0.085 2.9E-06 51.2 2.9 26 180-205 33-58 (257)
446 2pze_A Cystic fibrosis transme 91.6 0.086 3E-06 50.1 2.9 26 180-205 34-59 (229)
447 2olj_A Amino acid ABC transpor 91.5 0.097 3.3E-06 50.9 3.2 27 179-205 49-75 (263)
448 3foz_A TRNA delta(2)-isopenten 91.5 0.13 4.5E-06 50.7 4.1 27 179-205 9-35 (316)
449 2zu0_C Probable ATP-dependent 91.5 0.11 3.9E-06 50.5 3.7 25 179-203 45-69 (267)
450 1ltq_A Polynucleotide kinase; 91.5 0.11 3.6E-06 51.8 3.6 23 181-203 3-25 (301)
451 2ff7_A Alpha-hemolysin translo 91.5 0.089 3.1E-06 50.7 2.9 26 180-205 35-60 (247)
452 1a7j_A Phosphoribulokinase; tr 91.5 0.07 2.4E-06 52.8 2.1 27 179-205 4-30 (290)
453 2dyk_A GTP-binding protein; GT 91.4 0.12 4.2E-06 45.4 3.6 24 181-204 2-25 (161)
454 3zvl_A Bifunctional polynucleo 91.4 0.1 3.4E-06 54.7 3.4 27 178-204 256-282 (416)
455 2f9l_A RAB11B, member RAS onco 91.4 0.12 4E-06 47.8 3.5 24 181-204 6-29 (199)
456 2v9p_A Replication protein E1; 91.3 0.13 4.4E-06 51.1 3.9 27 178-204 124-150 (305)
457 2ged_A SR-beta, signal recogni 91.3 0.24 8.1E-06 45.3 5.5 26 179-204 47-72 (193)
458 2wji_A Ferrous iron transport 91.3 0.12 4E-06 46.1 3.3 23 181-203 4-26 (165)
459 4edh_A DTMP kinase, thymidylat 91.3 0.36 1.2E-05 45.1 6.8 32 180-212 6-37 (213)
460 1q3t_A Cytidylate kinase; nucl 91.3 0.15 5E-06 48.7 4.2 27 179-205 15-41 (236)
461 1vpl_A ABC transporter, ATP-bi 91.3 0.11 3.7E-06 50.3 3.2 27 179-205 40-66 (256)
462 1mv5_A LMRA, multidrug resista 91.2 0.11 3.7E-06 50.0 3.2 26 179-204 27-52 (243)
463 3ld9_A DTMP kinase, thymidylat 91.2 0.26 8.8E-06 46.4 5.7 30 177-206 18-47 (223)
464 2qi9_C Vitamin B12 import ATP- 91.1 0.1 3.4E-06 50.3 2.9 26 180-205 26-51 (249)
465 2ghi_A Transport protein; mult 91.1 0.11 3.9E-06 50.3 3.2 26 179-204 45-70 (260)
466 2eyu_A Twitching motility prot 91.1 0.14 4.8E-06 49.7 3.8 29 178-206 23-51 (261)
467 2ixe_A Antigen peptide transpo 91.1 0.11 3.9E-06 50.7 3.2 27 179-205 44-70 (271)
468 1nlf_A Regulatory protein REPA 91.0 0.12 4.1E-06 50.8 3.4 26 180-205 30-55 (279)
469 2ocp_A DGK, deoxyguanosine kin 91.0 0.15 5E-06 48.9 3.9 26 180-205 2-27 (241)
470 2nq2_C Hypothetical ABC transp 91.0 0.11 3.6E-06 50.3 2.8 26 180-205 31-56 (253)
471 2yz2_A Putative ABC transporte 90.9 0.12 4.1E-06 50.4 3.2 27 179-205 32-58 (266)
472 2ihy_A ABC transporter, ATP-bi 90.9 0.11 3.7E-06 51.1 2.9 27 179-205 46-72 (279)
473 2zej_A Dardarin, leucine-rich 90.9 0.11 3.9E-06 47.2 2.9 22 182-203 4-25 (184)
474 2ce2_X GTPase HRAS; signaling 90.8 0.13 4.6E-06 45.3 3.2 23 182-204 5-27 (166)
475 1svm_A Large T antigen; AAA+ f 90.8 0.28 9.7E-06 50.2 6.0 27 178-204 167-193 (377)
476 3sop_A Neuronal-specific septi 90.8 0.14 4.7E-06 50.1 3.5 24 182-205 4-27 (270)
477 4gzl_A RAS-related C3 botulinu 90.7 0.15 5.2E-06 47.3 3.6 36 169-204 19-54 (204)
478 1g8f_A Sulfate adenylyltransfe 90.7 0.24 8.1E-06 52.9 5.4 44 163-206 376-421 (511)
479 3io3_A DEHA2D07832P; chaperone 90.6 0.36 1.2E-05 48.9 6.6 43 177-221 15-59 (348)
480 1z2a_A RAS-related protein RAB 90.6 0.14 4.9E-06 45.3 3.3 24 181-204 6-29 (168)
481 2v3c_C SRP54, signal recogniti 90.5 0.12 4E-06 54.2 2.9 27 180-206 99-125 (432)
482 1cp2_A CP2, nitrogenase iron p 90.5 0.18 6.1E-06 49.1 4.1 38 181-220 2-39 (269)
483 2wjg_A FEOB, ferrous iron tran 90.4 0.14 5E-06 46.5 3.2 23 181-203 8-30 (188)
484 1tq4_A IIGP1, interferon-induc 90.4 0.19 6.6E-06 52.1 4.3 25 179-203 68-92 (413)
485 2qe7_A ATP synthase subunit al 90.4 0.34 1.2E-05 50.9 6.2 97 171-271 152-265 (502)
486 2vp4_A Deoxynucleoside kinase; 90.3 0.11 3.8E-06 49.4 2.3 25 179-203 19-43 (230)
487 3con_A GTPase NRAS; structural 90.3 0.15 5.3E-06 46.4 3.3 24 181-204 22-45 (190)
488 2r9v_A ATP synthase subunit al 90.3 0.28 9.7E-06 51.6 5.5 97 171-271 165-278 (515)
489 3iqw_A Tail-anchored protein t 90.2 0.4 1.4E-05 48.3 6.4 45 177-223 13-57 (334)
490 2pjz_A Hypothetical protein ST 90.2 0.14 4.7E-06 49.8 2.9 25 180-204 30-54 (263)
491 2r8r_A Sensor protein; KDPD, P 90.1 0.2 6.9E-06 47.0 3.8 37 182-220 8-44 (228)
492 2afh_E Nitrogenase iron protei 90.1 0.21 7.2E-06 49.3 4.3 39 180-220 2-40 (289)
493 2lkc_A Translation initiation 90.1 0.19 6.6E-06 45.0 3.7 26 178-203 6-31 (178)
494 1nrj_B SR-beta, signal recogni 90.1 0.2 7E-06 46.8 4.0 27 178-204 10-36 (218)
495 1u8z_A RAS-related protein RAL 90.0 0.17 5.9E-06 44.7 3.3 24 181-204 5-28 (168)
496 1r8s_A ADP-ribosylation factor 90.0 0.18 6.3E-06 44.5 3.4 22 183-204 3-24 (164)
497 3oaa_A ATP synthase subunit al 90.0 0.5 1.7E-05 49.6 7.0 97 171-271 152-265 (513)
498 1fx0_A ATP synthase alpha chai 89.9 0.3 1E-05 51.4 5.4 89 179-271 162-266 (507)
499 1c1y_A RAS-related protein RAP 89.9 0.18 6.1E-06 44.6 3.3 23 182-204 5-27 (167)
500 2gj8_A MNME, tRNA modification 89.9 0.16 5.4E-06 45.7 2.9 24 181-204 5-28 (172)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.7e-49 Score=435.52 Aligned_cols=311 Identities=13% Similarity=0.151 Sum_probs=244.9
Q ss_pred ccHHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHH--HhhccCCCCeEEEEEeCCCC--CHHHHHHHHHHH
Q 005834 162 DSRKKVFQDVLEALKDD---KLNIIGVYGMGGVGKTTLVKQVAK--QVTEDKLFDKVAMAEVTENP--DHQKIQDKLASD 234 (675)
Q Consensus 162 ~gr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 234 (675)
+||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ ++..++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999743 679999999999999999999999 56778899999999999985 899999999999
Q ss_pred hCCCcc-------cCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhH
Q 005834 235 LGIKFE-------LNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL 307 (675)
Q Consensus 235 l~~~~~-------~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (675)
++.... ...+.......+.+.|.++|||||||||||+.+++ .+ + ..+||+||||||+..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~--------~~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A--------QELRLRCLVTTRDVEI 277 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H--------HHTTCEEEEEESBGGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c--------ccCCCEEEEEcCCHHH
Confidence 986521 11234456788888888634999999999997754 11 1 2379999999999998
Q ss_pred HhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 005834 308 LRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLRQLRS 387 (675)
Q Consensus 308 a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~~l~~ 387 (675)
+.........|+|++|+++|||+||.++++.....+.+.+++++|+++|+|+||||+++|+.|+.++ |+.+ +.+..
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~ 353 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNN 353 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHH
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHH
Confidence 7532224468999999999999999999886544577888999999999999999999999998663 5443 33332
Q ss_pred cchhhccchhHHHHHHHhhcccccCChhHHHHHH-----------HhcCcCCCCccchhhHHHHHHhc--ccccCCC---
Q 005834 388 SYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFL-----------LCGLFSEGHAIPVSSLLRYGMGM--GYFRNVY--- 451 (675)
Q Consensus 388 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~~~i~~~~Li~~W~ae--g~i~~~~--- 451 (675)
..... ....+..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+....
T Consensus 354 ~l~~~---~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 354 KLESR---GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHH---CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred Hhhcc---cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC
Confidence 21111 1346788999999999998 999999 999999999998 8899999 9997532
Q ss_pred ChHHHHHHHHHHHHHHHHhccccCCC--CCCcccccHHHHHHHHHHhhhccc
Q 005834 452 TPEEARSTVHTLISKLKSSCLLLDGD--AEDEVKMHDVIRVVAVSIAKEELM 501 (675)
Q Consensus 452 ~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~~~a~~~~~~e~~ 501 (675)
+.+++ .. ++++|+++||++... ...+|+|||+||+||++++.++++
T Consensus 426 ~~~~~---~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEV---AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHH---HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHH---HH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 23332 33 899999999998642 456799999999999999877643
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-39 Score=397.41 Aligned_cols=315 Identities=19% Similarity=0.327 Sum_probs=252.8
Q ss_pred ccCccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhc-cC-CCCeEEEEEeCCCCC--HHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE-DK-LFDKVAMAEVTENPD--HQKIQ 228 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~vs~~~~--~~~~~ 228 (675)
|.....|+||++++++|.++|. ++..++|+|+||||+||||||+++|++.+. .. .|+.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4556679999999999999995 467899999999999999999999998643 33 447899999998654 34456
Q ss_pred HHHHHHhCCCcc----cCcCHHHHHHHHHHHHhc-cCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEecc
Q 005834 229 DKLASDLGIKFE----LNESIFDRANRLCRVLKN-EERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSR 303 (675)
Q Consensus 229 ~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (675)
..++..++.... ......+....+...+.. ++|+||||||||+..+|..+ .+||+||||||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvTtR 265 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEEES
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------------cCCCEEEEEcC
Confidence 677777765432 133456667777777764 23999999999998776653 35899999999
Q ss_pred chhHHhhhcCCcceEecCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHH
Q 005834 304 RQDLLRNVMNSQKEIQIDA-LSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVL 382 (675)
Q Consensus 304 ~~~va~~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l 382 (675)
++.++....+....+.+.+ |+++||++||...++.. .+.+++++++|+++|+|+||||+++|++|+.++ ..|..++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 9998754566778999996 99999999999988533 345667899999999999999999999999765 5799999
Q ss_pred HHHhhcchhhc----cchhHHHHHHHhhcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHHHH
Q 005834 383 RQLRSSYAKEI----DGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEARS 458 (675)
Q Consensus 383 ~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~ 458 (675)
+.+........ ......+..+|.+||+.||++ +|.||+|||+||+++.|+++.++.+|.+++ .
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~ 409 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------E 409 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------H
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------H
Confidence 99876543221 112357999999999999998 999999999999999999999999997653 3
Q ss_pred HHHHHHHHHHHhccccCCC--CCCcccccHHHHHHHHHHhhhc
Q 005834 459 TVHTLISKLKSSCLLLDGD--AEDEVKMHDVIRVVAVSIAKEE 499 (675)
Q Consensus 459 ~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~~~a~~~~~~e 499 (675)
.+.+++++|+++||++... ...+|+||++||++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 4556799999999997543 2336999999999999987665
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.3e-40 Score=367.29 Aligned_cols=284 Identities=19% Similarity=0.228 Sum_probs=225.7
Q ss_pred cccHHHHHHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 005834 161 FDSRKKVFQDVLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK-VAMAEVTENPDHQKIQDKLASDLGIK 238 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~~ 238 (675)
.+||++++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999974 56899999999999999999999998776777986 99999999999888888887754321
Q ss_pred ---cc--c------CcCHHHHHHHHHHHHh--ccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccch
Q 005834 239 ---FE--L------NESIFDRANRLCRVLK--NEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ 305 (675)
Q Consensus 239 ---~~--~------~~~~~~~~~~l~~~l~--~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (675)
.. . ..+.......+.+.|. .++|+||||||||+.+.|+.+ .+||+||||||++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------------~pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------------NLSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------------HSSCCEEEECSCS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------------CCCeEEEEeccCh
Confidence 10 0 0122334555666552 358999999999998877764 1589999999999
Q ss_pred hHHhhhcCCcceEecC------CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcC--ChHH
Q 005834 306 DLLRNVMNSQKEIQID------ALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNM--SLET 377 (675)
Q Consensus 306 ~va~~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~--~~~~ 377 (675)
.++.. +.....|.++ +|+.+|||+||++..+.. ..++..+| |+|+||||+++|+.|+.+ +.++
T Consensus 276 ~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 98742 2223356666 899999999999986432 22344444 999999999999999976 6778
Q ss_pred HHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhH-HHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHH
Q 005834 378 WKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEA-KSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEA 456 (675)
Q Consensus 378 w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 456 (675)
|... ....+..+|.+||+.||++ . |.||+|||+||+++.|+.+.++.+|+++|. +
T Consensus 347 W~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e-- 402 (1221)
T 1vt4_I 347 WKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S-- 402 (1221)
T ss_dssp HHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H--
T ss_pred HhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H--
Confidence 8652 1357899999999999998 7 999999999999999999999999998871 1
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCcccccHHHHHHHH
Q 005834 457 RSTVHTLISKLKSSCLLLDGDAEDEVKMHDVIRVVAV 493 (675)
Q Consensus 457 ~~~~~~~~~~L~~~~l~~~~~~~~~~~mHdlv~~~a~ 493 (675)
.+..++++|+++||++..+...+|+|||++++++.
T Consensus 403 --dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 --DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp --HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred --HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 34568999999999988655678999999999663
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=333.35 Aligned_cols=309 Identities=20% Similarity=0.340 Sum_probs=236.0
Q ss_pred cCccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhc-cCCC-CeEEEEEeCCCCCHHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE-DKLF-DKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i 231 (675)
.....|+||+.++++|.++|. .++.++|+|+|+||+||||||++++++... ..+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 345579999999999999997 356789999999999999999999987654 4568 58999999876 333444443
Q ss_pred ---HHHhCCCc----ccCcCHHHHHHHHHHHHhcc-CeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEecc
Q 005834 232 ---ASDLGIKF----ELNESIFDRANRLCRVLKNE-ERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSR 303 (675)
Q Consensus 232 ---~~~l~~~~----~~~~~~~~~~~~l~~~l~~~-k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (675)
+..++... ....+.......+...+... +++||||||+|+...++.+ .+|++||||||
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------------~~~~~ilvTsR 265 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------------CSSCEEEEEES
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------------cCCCeEEEECC
Confidence 44555211 11334556667777777642 6899999999987655432 35899999999
Q ss_pred chhHHhhhcCCcceEec---CCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHH
Q 005834 304 RQDLLRNVMNSQKEIQI---DALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKY 380 (675)
Q Consensus 304 ~~~va~~~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~ 380 (675)
+..++.... ...+++ ++|+.+|+++||...++.. .+...+.+.+|+++|+|+||||..+|+.++... ..|..
T Consensus 266 ~~~~~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 266 DKSVTDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp CGGGGTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred CcHHHHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 998764322 233444 5899999999999998742 223356789999999999999999999999753 47999
Q ss_pred HHHHHhhcchhhc----cchhHHHHHHHhhcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhcccccCCCChHHH
Q 005834 381 VLRQLRSSYAKEI----DGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGYFRNVYTPEEA 456 (675)
Q Consensus 381 ~l~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 456 (675)
+++.+........ ......+..++..||+.||++ .|.||.+||+||+++.|+.+.+...|.+++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~----------- 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET----------- 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----------
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH-----------
Confidence 9988875432211 112357899999999999998 999999999999999999999999996542
Q ss_pred HHHHHHHHHHHHHhccccCC--CCCCcccccHHHHHHHHHHhh
Q 005834 457 RSTVHTLISKLKSSCLLLDG--DAEDEVKMHDVIRVVAVSIAK 497 (675)
Q Consensus 457 ~~~~~~~~~~L~~~~l~~~~--~~~~~~~mHdlv~~~a~~~~~ 497 (675)
..+..+++.|+++||++.. +...+|+||+++|+++.....
T Consensus 409 -~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 -EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp -HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred -HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 2345678999999999743 233479999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=6.8e-15 Score=153.35 Aligned_cols=299 Identities=14% Similarity=0.130 Sum_probs=178.6
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC------CHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP------DHQKIQD 229 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~ 229 (675)
..+..|+||+++++.+.+++..+ +++.|+|++|+|||||++++++... ++|+.+.... +...++.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHH
Confidence 34567899999999999988754 7999999999999999999998741 6788765432 5667777
Q ss_pred HHHHHhCC---------------Cccc---CcCHHHHHHHHHHHHhccCeEEEEecCccccccc-----ccccCCCCccc
Q 005834 230 KLASDLGI---------------KFEL---NESIFDRANRLCRVLKNEERHLIILDNIWGELKF-----DEVGIPSGDVK 286 (675)
Q Consensus 230 ~i~~~l~~---------------~~~~---~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~-----~~~~~~~~~~~ 286 (675)
.+.+.+.. .... .....+....+.+.....++.+||+||++....| ..+. ..+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~----~~L 155 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL----ALF 155 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH----HHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH----HHH
Confidence 77766542 0000 1233344444544443224899999999765432 1111 111
Q ss_pred cccccCCCCeEEEEeccchhHHhhh----------cCC-cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Q 005834 287 KERMDDQRRCTIILTSRRQDLLRNV----------MNS-QKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGR 355 (675)
Q Consensus 287 ~~~~~~~~~s~ilvTtR~~~va~~~----------~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~ 355 (675)
..+.....+.++|+|++........ .+. ...+++.+|+.+|+.+++...+..... +--.+.+..|++.
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~~~~~~~i~~~ 234 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVPENEIEEAVEL 234 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Confidence 1112233578899998775431111 111 248999999999999999886532211 1224578899999
Q ss_pred hCCChhHHHHHHHHHhc-CChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcCCCCccch
Q 005834 356 CGELPVALITLAKALKN-MSLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPV 434 (675)
Q Consensus 356 c~GlPLai~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~ 434 (675)
|+|+|+++..++..+.. .+...+ ...+...... .....+.. +.+ + ++. .+..+..+|. +. .+.
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~l~~---l~~-~-~~~-~~~~l~~la~---g~-~~~ 298 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRA---MKRTLEVAKG---LIMGELEE---LRR-R-SPR-YVDILRAIAL---GY-NRW 298 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHH---HHHHHHHH---HHH-H-CHH-HHHHHHHHHT---TC-CSH
T ss_pred hCCCHHHHHHHHHHHhccccHhHH---HHHHHHHHHH---HHHHHHHH---HHh-C-Chh-HHHHHHHHHh---CC-CCH
Confidence 99999999999876542 232222 1111100000 00111111 111 2 555 8899998887 21 444
Q ss_pred hhHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHhccccCCCCCCcccc-cHHHHHHHH
Q 005834 435 SSLLRYGMGMGYFRNVYTPEEARSTVHTLISKLKSSCLLLDGDAEDEVKM-HDVIRVVAV 493 (675)
Q Consensus 435 ~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~~~a~ 493 (675)
..+....... . +..+ ...+..+++.|.+.+++...+ +.|++ |++++++.+
T Consensus 299 ~~l~~~~~~~-~--~~~~----~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 299 SLIRDYLAVK-G--TKIP----EPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHT-T--CCCC----HHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHH-h--CCCC----HHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 5554432211 0 0011 123456788899999997542 45655 788888753
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=7.8e-14 Score=145.68 Aligned_cols=299 Identities=13% Similarity=0.139 Sum_probs=171.5
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-----CCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-----PDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~ 230 (675)
..+..|+||+++++.+.+ +.. +++.|+|++|+|||||++.+++.... ..+|+.+... .+...+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345678999999999999 765 69999999999999999999988642 2578887642 344555555
Q ss_pred HHHHhC------------------CCccc---CcC----HHHHHHHHHHHHhc-c-CeEEEEecCcccccccccccCCCC
Q 005834 231 LASDLG------------------IKFEL---NES----IFDRANRLCRVLKN-E-ERHLIILDNIWGELKFDEVGIPSG 283 (675)
Q Consensus 231 i~~~l~------------------~~~~~---~~~----~~~~~~~l~~~l~~-~-k~~LlVlDdv~~~~~~~~~~~~~~ 283 (675)
+.+.+. .+.+. ... .......+.+.+.. . ++++||+||++....-.. ..+.
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~--~~~~ 158 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG--VNLL 158 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT--CCCH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc--hhHH
Confidence 544331 00000 000 01122334444432 1 389999999965422000 0011
Q ss_pred ccccccccCCCCeEEEEeccchhHHhhh----------cCC-cceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHH
Q 005834 284 DVKKERMDDQRRCTIILTSRRQDLLRNV----------MNS-QKEIQIDALSKEEALHLFQKIVGD-SMKTSAFQPIAHE 351 (675)
Q Consensus 284 ~~~~~~~~~~~~s~ilvTtR~~~va~~~----------~~~-~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~ 351 (675)
..+..+.....+.++|+|++........ .+. ...+.+.+|+.+|+.+++...+.. ....+. ...
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~ 234 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEV 234 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHH
Confidence 1111112233578899999876432111 112 258999999999999999886531 111121 279
Q ss_pred HHHHhCCChhHHHHHHHHHhc-CChHHHHH-HHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcCCC
Q 005834 352 IVGRCGELPVALITLAKALKN-MSLETWKY-VLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEG 429 (675)
Q Consensus 352 I~~~c~GlPLai~~~~~~L~~-~~~~~w~~-~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~ 429 (675)
|++.|+|+|+++..++..+.. .+...|.. +.+.... .....+...+.- -..||+. .+..+..+|. +
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~-~~~l~~~-~~~~l~~la~---g 302 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHG-REIARKR-YLNIMRTLSK---C 302 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTT-CGGGHHH-HHHHHHHHTT---C
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhc-cccccHH-HHHHHHHHHc---C
Confidence 999999999999999887652 23333321 1111000 001111111110 0157777 8999999988 2
Q ss_pred CccchhhHHHHHH-hcccccCCCChHHHHHHHHHHHHHHHHhccccCCCCCCccc-ccHHHHHHH
Q 005834 430 HAIPVSSLLRYGM-GMGYFRNVYTPEEARSTVHTLISKLKSSCLLLDGDAEDEVK-MHDVIRVVA 492 (675)
Q Consensus 430 ~~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-mHdlv~~~a 492 (675)
. +...+....- ..|. ..+ ...+..+++.|++.+++...+ +.|+ .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~---~~~----~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI---EIS----DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS---CCC----HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC---CCC----HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 1 3444432110 1120 001 123456788999999997643 4566 588988764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=2.2e-14 Score=153.17 Aligned_cols=309 Identities=15% Similarity=0.089 Sum_probs=183.3
Q ss_pred cccccHHHHHHHHHHHh-c----c--CCccEEEE--EcCCCCcHHHHHHHHHHHhhcc---CCCC-eEEEEEeCCCCCHH
Q 005834 159 EAFDSRKKVFQDVLEAL-K----D--DKLNIIGV--YGMGGVGKTTLVKQVAKQVTED---KLFD-KVAMAEVTENPDHQ 225 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 225 (675)
..|+||+++++.+.+++ . . ...+.+.| +|++|+||||||+.+++..... ..|. .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999988 4 2 34567777 9999999999999999886542 1233 36788877778899
Q ss_pred HHHHHHHHHhCCCccc-CcCHHHHHHHHHHHHh-ccCeEEEEecCcccccc--------cccccCCCCccccccccCC--
Q 005834 226 KIQDKLASDLGIKFEL-NESIFDRANRLCRVLK-NEERHLIILDNIWGELK--------FDEVGIPSGDVKKERMDDQ-- 293 (675)
Q Consensus 226 ~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~k~~LlVlDdv~~~~~--------~~~~~~~~~~~~~~~~~~~-- 293 (675)
.++..++.+++..... ..+..+....+.+.+. .+++++|||||++.... +..+...+.. ....+
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~----~~~~~~~ 177 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE----IPSRDGV 177 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH----SCCTTSC
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh----cccCCCC
Confidence 9999999999765431 2234455566666664 24789999999976422 1111111100 00012
Q ss_pred CCeEEEEeccchhHHhh-------h-cCCcceEecCCCCHHHHHHHHHHHhCCC-CCCCCchHHHHHHHHHhC------C
Q 005834 294 RRCTIILTSRRQDLLRN-------V-MNSQKEIQIDALSKEEALHLFQKIVGDS-MKTSAFQPIAHEIVGRCG------E 358 (675)
Q Consensus 294 ~~s~ilvTtR~~~va~~-------~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~l~~~~~~I~~~c~------G 358 (675)
.+..+|+||+...+... . ......+.+++|+.++++++|...+... ....--.+..+.|++.|+ |
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence 44568888875543210 1 1112349999999999999998764311 111223567889999999 9
Q ss_pred ChhHHHHHHHHHh------cC---ChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcC--
Q 005834 359 LPVALITLAKALK------NM---SLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFS-- 427 (675)
Q Consensus 359 lPLai~~~~~~L~------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp-- 427 (675)
.|..+..+..... +. +.+.+........ . ...+.-++..||++ .+.++..++.+.
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~--~~~~~~~l~~l~~~-~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A--ASIQTHELEALSIH-ELIILRLIAEATLG 323 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c--cchHHHHHHcCCHH-HHHHHHHHHHHHhc
Confidence 9976655544321 11 2222332222100 0 23355677889988 888888888653
Q ss_pred CCCccchhhHHHHHHhc--ccccCCCChHHHHHHHHHHHHHHHHhccccCC----CCCCcccccHHH
Q 005834 428 EGHAIPVSSLLRYGMGM--GYFRNVYTPEEARSTVHTLISKLKSSCLLLDG----DAEDEVKMHDVI 488 (675)
Q Consensus 428 ~~~~i~~~~Li~~W~ae--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mHdlv 488 (675)
.+..+....+...+... ... +.... ....+..+++.|...+++... +..++|++|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMY-NVKPR--GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHS-CCCCC--CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHhhc-CCCCC--CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 23345555555444211 011 00000 123455678899999999542 234557666655
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=2.8e-14 Score=147.12 Aligned_cols=151 Identities=24% Similarity=0.310 Sum_probs=114.9
Q ss_pred cCCCeEEecCCCCCccCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCcccccc-------
Q 005834 519 QEGPIAISLPYRGIQVLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGR------- 589 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~------- 589 (675)
...++.+.+.+|.+..+|.. ..+++|+.|++..|... .+|. .+.++++|++|++++|++. .+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 45677888888887777654 36788888888666544 3333 3677888888888886543 56766654
Q ss_pred --ccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCE
Q 005834 590 --LINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEV 666 (675)
Q Consensus 590 --L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~ 666 (675)
+++|++|++++|.++. |..++++++|++|++++|.+..+|..++.+++|+.|++++|.....+|..+. .+++|++
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~ 257 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKR 257 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCCCE
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhc--CCCCCCE
Confidence 8888888888888777 6778888888888888888888888888888888888888887777777655 4888888
Q ss_pred EeCcCCCC
Q 005834 667 FGMAASRR 674 (675)
Q Consensus 667 L~l~~c~~ 674 (675)
|++++|..
T Consensus 258 L~L~~n~~ 265 (328)
T 4fcg_A 258 LILKDCSN 265 (328)
T ss_dssp EECTTCTT
T ss_pred EECCCCCc
Confidence 88888753
No 9
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=6.3e-14 Score=133.17 Aligned_cols=146 Identities=15% Similarity=0.139 Sum_probs=126.0
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-CccccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~~L~ 597 (675)
...++.+.+.++.+..++....+++|+.|.+..+.... . . .+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~--~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN--Y-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC--C-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc--c-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45788999999999988877789999999997763322 2 1 37889999999999999985 688899999999999
Q ss_pred eccccCCC--cccccCCCCCcEEEeeCCC-CCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKD--IVIVGQLKKLEILSFRGSD-IERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..+| . +. .+++|++|++++++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~-~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IE-DFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GG-GCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hc-cCCCCCEEEeeCcc
Confidence 99999987 7889999999999999997 88998 69999999999999987 77777 3 34 69999999999864
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=8.7e-14 Score=139.45 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=128.1
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~ 597 (675)
...++.+.+.+|.+..++....+++|+.|.+..+... ..+...+.++++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ--SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC--ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5678999999999988877778999999999766533 45556678899999999999999987654 78999999999
Q ss_pred eccccCCC-c-ccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKD-I-VIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+. .+++|++|++++|+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFD-RLTSLQYIWLHDNP 216 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHh-CCcCCCEEEccCCC
Confidence 99999888 3 3478999999999999999988765 6889999999999987 7778877666 79999999998864
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=1.3e-13 Score=134.21 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=118.3
Q ss_pred EEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEEecccc
Q 005834 524 AISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYCR 602 (675)
Q Consensus 524 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 602 (675)
.+....+.+..+|... .++|+.|++..+... .+....+.++++|++|+|++|.+..+|.. +..+++|++|+|++|+
T Consensus 23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQIT--KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcCccCCCC-CCCCCEEEcCCCccC--ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4666677777777643 488999999766543 23345578899999999999999888654 6889999999999999
Q ss_pred CCC-c-ccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 603 LKD-I-VIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 603 l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++. + ..+..+++|++|+|++|.++.+|..+..+++|++|++++|. +..+|...+. .+++|++|++++++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFD-RLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTT-TCTTCCEEECTTSC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHh-CCCCCCEEEeeCCC
Confidence 888 3 34788999999999999999999999999999999999986 8888877666 79999999998765
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.6e-13 Score=135.86 Aligned_cols=151 Identities=23% Similarity=0.314 Sum_probs=129.0
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~ 595 (675)
+..++.+.+.++.+..++. ...+++|+.|++..+... ..+...+.++++|++|++++|.++.+| ..+..+++|++
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 4678999999999987765 347899999999776543 344556889999999999999999876 45789999999
Q ss_pred EEeccccCCC-cc-cccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 596 LCLEYCRLKD-IV-IVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 596 L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|+|++|+++. +. .++.+++|++|+|++|.++.+|. .+..+++|++|++++|. +..+|...+. .+++|++|+++++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N 189 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFD-RLGKLQTITLFGN 189 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHh-CCCCCCEEEeeCC
Confidence 9999999988 43 47899999999999999999987 58999999999999987 7888877666 7999999999987
Q ss_pred C
Q 005834 673 R 673 (675)
Q Consensus 673 ~ 673 (675)
+
T Consensus 190 ~ 190 (251)
T 3m19_A 190 Q 190 (251)
T ss_dssp C
T ss_pred c
Confidence 5
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.52 E-value=6.7e-14 Score=144.27 Aligned_cols=153 Identities=24% Similarity=0.324 Sum_probs=130.3
Q ss_pred cCCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhh--------hcCCCCccEEEecCCCCCCCcccccc
Q 005834 519 QEGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHF--------FDGTEGLRVLNFTGIHFSSLPSSLGR 589 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~~~lp~~i~~ 589 (675)
..+++.+.+.+|.+..+|... .+++|+.|++..+... ..+|..+ +.++++|++|++++|.++.+|..++.
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence 467899999999998887644 7899999999764421 1222222 34589999999999999999999999
Q ss_pred ccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCC-CccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEE
Q 005834 590 LINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDI-ERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVF 667 (675)
Q Consensus 590 L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L 667 (675)
+++|++|++++|.+.. |+.++.+++|++|++++|.+ ..+|..++.+++|++|++++|.....+|..+. ++++|++|
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L 282 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH--RLTQLEKL 282 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG--GCTTCCEE
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh--cCCCCCEE
Confidence 9999999999999988 77899999999999999865 47888999999999999999998899998865 59999999
Q ss_pred eCcCCCC
Q 005834 668 GMAASRR 674 (675)
Q Consensus 668 ~l~~c~~ 674 (675)
++++|+.
T Consensus 283 ~L~~n~~ 289 (328)
T 4fcg_A 283 DLRGCVN 289 (328)
T ss_dssp ECTTCTT
T ss_pred eCCCCCc
Confidence 9999874
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.7e-13 Score=137.26 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=100.4
Q ss_pred CCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCEE
Q 005834 520 EGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQTL 596 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L 596 (675)
.+++.+.+.+|.+..++.. ..+++|++|.+..+... .++...+.++++|++|++++|.++.+| ..++.+++|++|
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC--CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC--cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 4566666666666655543 24666777766544332 333445666777777777777777654 335677777777
Q ss_pred EeccccCCC-cc-cccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 597 CLEYCRLKD-IV-IVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 597 ~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++++|.+.. +. .++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+. .+++|++|++++++
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFD-SLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhc-cccCCCEEEecCCC
Confidence 777777766 32 367777788888877777777653 6777788888888775 6677766555 67788888887664
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.49 E-value=2.7e-13 Score=135.87 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=129.0
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~ 597 (675)
...++.+.+.++.+..++....+++|+.|.+.++..... + .+..+++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 567899999999999888888999999999977654332 2 478899999999999999987654 68999999999
Q ss_pred eccccCCC-c-ccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKD-I-VIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|++.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+. .+++|++|++++|.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFD-KLTQLKDLRLYQNQ 192 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhc-CCccCCEEECCCCc
Confidence 99999988 3 3589999999999999999998875 6899999999999987 7788887766 79999999999874
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.7e-13 Score=131.11 Aligned_cols=145 Identities=20% Similarity=0.289 Sum_probs=109.0
Q ss_pred EEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEecccc
Q 005834 524 AISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCR 602 (675)
Q Consensus 524 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~ 602 (675)
.+...++.++.+|... .++|+.|.+..+... .++...|..+++|++|+|++|.++.+ |..+..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4556667777776543 267888888665533 33444577888888888888888865 6778888888888888888
Q ss_pred CCC-cc-cccCCCCCcEEEeeCCCCCccc-hhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 603 LKD-IV-IVGQLKKLEILSFRGSDIERLP-LEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 603 l~~-~~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++. |. .+..+++|++|+|++|.++.++ ..+..+++|++|++++|. +..+|...+. .+++|++|++++++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFS-PLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHh-CCCCCCEEEeCCCC
Confidence 887 33 4678888888888888888774 468888888888888876 7777776665 68888888888764
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.3e-13 Score=134.25 Aligned_cols=151 Identities=24% Similarity=0.338 Sum_probs=129.0
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 595 (675)
+..++.+.+.++.+..++. ...+++|+.|.+..+... .++...|.++++|++|++++|.++.+|. .+..+++|++
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS--CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC--eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 4678999999999988775 458999999999766543 4556668899999999999999998865 4688999999
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+. .+++|++|++++|
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N 191 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFD-KLTELKTLKLDNN 191 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSS
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhc-cCCCcCEEECCCC
Confidence 9999999888 44688999999999999999999875 7899999999999986 8888877666 7999999999887
Q ss_pred C
Q 005834 673 R 673 (675)
Q Consensus 673 ~ 673 (675)
.
T Consensus 192 ~ 192 (270)
T 2o6q_A 192 Q 192 (270)
T ss_dssp C
T ss_pred c
Confidence 3
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.9e-13 Score=130.95 Aligned_cols=147 Identities=17% Similarity=0.262 Sum_probs=105.9
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~ 601 (675)
+.+.++++.++.+|... .+.++.|.+..+...... +...|..+++|++|++++|.++.+|. .++.+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEEC-CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccC-chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35677777777776533 445678888665543321 23446778888888888888886644 6788888888888888
Q ss_pred cCCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 602 RLKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 602 ~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.++. +..++.+++|++|+|++|.++.+ |..+..+++|++|++++|. +..+++..+. .+++|++|++++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFD-TLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTT-TCTTCCEEECCSCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhc-CCCCCCEEEecCcC
Confidence 8777 34578888888888888888877 4567888888888888876 6666545555 68888888887764
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=3.1e-13 Score=136.60 Aligned_cols=149 Identities=23% Similarity=0.180 Sum_probs=112.0
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCEEE
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQTLC 597 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~ 597 (675)
...++.+.+.+|.+..++....+++|+.|+++.+.... ++ ..+.++++|++|++++|.++.+| ..+..+++|++|+
T Consensus 54 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp CTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc--Cc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 35677777887777776666677888888886665432 22 23567888888888888888775 4578888888888
Q ss_pred eccccCCC-c-ccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKD-I-VIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|+++. + ..+..+++|++|+|++|+++.+|.. +..+++|++|++++|. +..+|..++. +++|++|++++++
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~--~~~L~~l~L~~Np 206 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFG--SHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT--TCCCSEEECCSCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcc--cccCCeEEeCCCC
Confidence 88888777 3 3467888888888888888888775 4678888888888876 7788887765 7788888888664
No 20
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=4.6e-13 Score=135.51 Aligned_cols=145 Identities=21% Similarity=0.271 Sum_probs=116.5
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.+|.+..++....+++|+.|.+..+..... + .+..+++|++|++++|.++.++ .++.+++|++|++
T Consensus 67 l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l 141 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S--SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 141 (291)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G--GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEEC
T ss_pred CCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--h--hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEc
Confidence 467888888888888777666788888888876654332 2 2778888999999998888774 5888889999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.+..++.++.+++|++|++++|.+..+|. +..+++|++|++++|. +..+|. +. .+++|+.|++++|+
T Consensus 142 ~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~--l~-~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LA-GLKNLDVLELFSQE 211 (291)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GT-TCTTCSEEEEEEEE
T ss_pred cCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChh--hc-cCCCCCEEECcCCc
Confidence 99988887788888999999999998888876 8888999999999886 777765 44 68899999988763
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=2.8e-13 Score=136.97 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=128.5
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 596 (675)
+..++.+.+.+|.+..++. ...+++|+.|.+..+.....+. ...+++|++|++++|.++.+|..+..+++|++|
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 4678999999999877643 3478999999997766443332 267899999999999999999999999999999
Q ss_pred EeccccCCC--cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 597 CLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 597 ~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++++|+++. +..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +..+|.+++. .+++|++|+++++.
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLN-GLENLDTLLLQENS 183 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhc-CcCCCCEEECCCCc
Confidence 999999988 35789999999999999999999875 6889999999999987 8899988876 79999999998874
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=7.4e-13 Score=126.91 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=79.5
Q ss_pred EecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEEeccccC
Q 005834 525 ISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYCRL 603 (675)
Q Consensus 525 lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~l 603 (675)
+....+.+..+|... .++|+.|++..+... .++...+..+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 12 v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTGI-PAQTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccCCCCCC-CCCCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 333444444444322 345666666544322 23334455666666666666666655433 45666666666666666
Q ss_pred CC-c-ccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 604 KD-I-VIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 604 ~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+. .+++|++|+++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~-~l~~L~~L~l~~N 158 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFD-RLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhc-cCCCccEEEecCC
Confidence 55 2 2345666666666666666665553 4566666666666654 5555555444 5666666666654
No 23
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=7.2e-13 Score=135.25 Aligned_cols=145 Identities=21% Similarity=0.307 Sum_probs=118.3
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.+|.+..++....+++|+.|++.++..... + .+..+++|++|++++|.++.+|. ++.+++|++|++
T Consensus 62 l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC
Confidence 467888888888888777766788899998876654332 2 37788899999999999888775 888999999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.+...+.++.+++|++|++++|.++.+|. +..+++|++|++++|. +..+|. +. .+++|++|++++|.
T Consensus 137 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~-~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LA-SLPNLIEVHLKNNQ 206 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GG-GCTTCCEEECTTSC
T ss_pred CCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hc-CCCCCCEEEccCCc
Confidence 99988885558889999999999999888886 8889999999999886 777775 34 69999999998874
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=8.5e-13 Score=130.53 Aligned_cols=148 Identities=24% Similarity=0.371 Sum_probs=124.8
Q ss_pred CCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCEEEec
Q 005834 521 GPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQTLCLE 599 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~ 599 (675)
..+.+.+.++.+..+|.... ++++.|++.++... ..+...+.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678888888888886543 78999999766543 334455889999999999999999764 458999999999999
Q ss_pred cccCCC--cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 600 YCRLKD--IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 600 ~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|.++. +..+..+++|++|+|++|.++.+|.. +..+++|++|++++|. +..+|...+. .+++|++|+++++.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFD-KLTNLQTLSLSTNQ 166 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcC-cCcCCCEEECCCCc
Confidence 999988 45678999999999999999999876 6889999999999986 8888887666 79999999999874
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=7.6e-13 Score=133.56 Aligned_cols=150 Identities=21% Similarity=0.211 Sum_probs=86.6
Q ss_pred CCCeEEecCCCCCccCC-C-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEE
Q 005834 520 EGPIAISLPYRGIQVLP-E-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTL 596 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L 596 (675)
..++.+.+.+|.+..+. . ...+++|+.|++..+.. ....+...+..+++|++|++++|.++.+ |..+..+++|++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC-ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 34555555555554432 1 22456666666644320 1122233355666666666666666654 4456666667777
Q ss_pred EeccccCCC-c-ccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 597 CLEYCRLKD-I-VIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 597 ~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+++..+. .+++|++|++++|
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n 211 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFAN 211 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCC
Confidence 777666665 2 3466667777777777766666653 6666777777777665 4444333333 4677777777665
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.1e-12 Score=133.87 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=122.5
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
..+++.+.+.+|.+..++....+++|+.|++.++..... +. +..+++|+.|++++|.++.+|. ++.+++|++|++
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 158 (308)
T 1h6u_A 84 LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSI 158 (308)
T ss_dssp CCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEc
Confidence 467899999999998888777899999999977654432 22 7889999999999999998876 889999999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.+.....+..+++|++|++++|.++.+|. +..+++|++|++++|. +..+|. +. .+++|++|++++|+
T Consensus 159 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~--l~-~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSP--LA-NTSNLFIVTLTNQT 228 (308)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGG--GT-TCTTCCEEEEEEEE
T ss_pred cCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCcccc--cc-CCCCCCEEEccCCe
Confidence 99999885558999999999999999998886 8899999999999987 777774 44 69999999998764
No 27
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=9.1e-13 Score=133.29 Aligned_cols=145 Identities=21% Similarity=0.232 Sum_probs=121.5
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.++.+..++....+++|+.|.+.++..... +. +.++++|++|++++|.++.+|. ++.+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 456888999999888888777889999999976654332 22 7889999999999999988764 889999999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|++..++.++.+++|++|++++|.++.+ ..+..+++|++|++++|. +..++. +. .+++|++|++++|.
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~-~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LA-GLTKLQNLYLSKNH 189 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GT-TCTTCCEEECCSSC
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hc-CCCccCEEECCCCc
Confidence 999988888889999999999999999888 478899999999999986 777766 44 69999999998874
No 28
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.43 E-value=8.2e-13 Score=131.46 Aligned_cols=144 Identities=21% Similarity=0.242 Sum_probs=122.2
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.++.+..++....+++|+.|.+.++..... +. +.++++|++|++++|.++.+|... . .+|++|++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh--hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 467899999999999888777899999999977654332 22 788999999999999999887643 3 99999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.++.++.++.+++|++|++++|+++.+| .+..+++|++|++++|. +..++ . +. .+++|++|++++++
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~-~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LT-RLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-ST-TCCCCCEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hc-cCCCCCEEeCCCCc
Confidence 9999999778999999999999999999997 68999999999999987 66663 3 44 69999999998764
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.1e-13 Score=123.29 Aligned_cols=130 Identities=21% Similarity=0.152 Sum_probs=72.0
Q ss_pred cCCCeEEecCCCCCc--cCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-CccccccccCCC
Q 005834 519 QEGPIAISLPYRGIQ--VLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSSLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~ 594 (675)
+..++.+.+.+|.+. .+|.. ..+++|+.|++..+..... ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 455666666666665 45544 3556666666654432222 224555666666666666554 454445566666
Q ss_pred EEEeccccCCC-c--ccccCCCCCcEEEeeCCCCCccch----hhcCCCCCCEecCcCcccCcccc
Q 005834 595 TLCLEYCRLKD-I--VIVGQLKKLEILSFRGSDIERLPL----EFGQLTRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 595 ~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~~~~l~~lp 653 (675)
+|++++|.++. + ..++.+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 66666665555 2 455556666666666665555554 45556666666666554 33344
No 30
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=2e-12 Score=130.47 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=127.6
Q ss_pred cCCCeEEecCCCC-CccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCC
Q 005834 519 QEGPIAISLPYRG-IQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~-~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~ 594 (675)
...++.+.+.+|. +..++. ...+++|+.|.+.++... ..+...+.++++|++|++++|.++.+|.. ++.+++|+
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC--EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 4578999999987 776632 347899999999766543 34445588899999999999999987654 88999999
Q ss_pred EEEeccccCCC-cc-cccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 595 TLCLEYCRLKD-IV-IVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 595 ~L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
+|++++|+++. +. .+..+++|++|++++|.+..+ |..+..+++|+.|++++|. +..+|...+. .+++|++|++++
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~ 234 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALA-PLRALQYLRLND 234 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHT-TCTTCCEEECCS
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcc-cCcccCEEeccC
Confidence 99999999988 43 589999999999999999877 7789999999999999987 7788877666 799999999998
Q ss_pred CC
Q 005834 672 SR 673 (675)
Q Consensus 672 c~ 673 (675)
++
T Consensus 235 N~ 236 (285)
T 1ozn_A 235 NP 236 (285)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 31
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=1.4e-12 Score=145.02 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=123.7
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.|.+.+|.+..++....+++|+.|.+..|.....+ .+..+++|+.|+|++|.+..+| .+..|++|+.|+|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS----SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT----TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEEC
T ss_pred CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh----hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEEC
Confidence 5678999999999988877778999999999776544322 3788999999999999998875 5889999999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.+..+..++.+++|+.|+|++|.+..++. +..|++|++|+|++|. +..+|. +. .+++|+.|+|++|+
T Consensus 139 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~-~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 139 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LA-GLKNLDVLELFSQE 208 (605)
T ss_dssp CSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GT-TCTTCSEEECCSEE
T ss_pred CCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH--Hc-cCCCCCEEEccCCc
Confidence 99999888889999999999999999998876 8999999999999986 777764 44 69999999998874
No 32
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=4.4e-13 Score=152.76 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=91.0
Q ss_pred cCCCeEEecCCCCCccCCCC-cCCCccceeEecccc--CcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPER-LQCPRLELLLLLEKG--GGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~ 595 (675)
...++++++..+.+...+.. ....+|+.+.+.... ......+...+..++.|+.|+|++|.+..+|..+..|++|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 44577777776666554432 233344444432211 112234456678888899999999988888888888999999
Q ss_pred EEeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 596 LCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 596 L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|+|++|.++. |..+++|++|++|+|++|.++.+|..++.|++|++|+|++|. +..+|..+. +|++|++|+|++|+
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~--~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFG--NLCNLQFLGVEGNP 327 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTT--SCTTCCCEECTTSC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhh--cCCCccEEeCCCCc
Confidence 9999998887 778889999999999999888888888899999999998886 778888754 58899999988874
No 33
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=6.8e-13 Score=119.79 Aligned_cols=126 Identities=23% Similarity=0.301 Sum_probs=95.1
Q ss_pred CccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCcEEE
Q 005834 542 PRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILS 619 (675)
Q Consensus 542 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~ 619 (675)
++|+.|++.++......++. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666554432112222 357788899999998888877 678888999999999998877 44556788999999
Q ss_pred eeCCCCCccc--hhhcCCCCCCEecCcCcccCcccch---hhhhccCCccCEEeCcC
Q 005834 620 FRGSDIERLP--LEFGQLTRLQLLDLSNCRRLEVITP---NVICQSWLHLEVFGMAA 671 (675)
Q Consensus 620 l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~~~~~L~~L~~L~l~~ 671 (675)
+++|.++.+| ..++.+++|++|++++|. +..+|. ..+. .+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFK-LLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHH-HCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHH-HCCCcccccCCC
Confidence 9999888875 678889999999999886 677775 4555 689999998864
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=1.4e-12 Score=136.39 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=125.4
Q ss_pred cCCCeEEecCCCCCccCCCCc---CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPERL---QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~ 594 (675)
+..++.|.+++|.+..++... .+++|+.|++..|... .++...|.++++|++|+|++|.++.+|. .+..+++|+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 456889999999998876542 7899999999766543 3444568899999999999999997754 588999999
Q ss_pred EEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhh----cCCCCCCEecCcCcccCcccchhhhhccCCc--cCE
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEF----GQLTRLQLLDLSNCRRLEVITPNVICQSWLH--LEV 666 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~--L~~ 666 (675)
+|+|++|++.. +..+..+++|++|+|++|.++.+|..+ ..+++|++|++++|. +..+|...+. .+++ |+.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~~~l~~ 193 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ-KLPAWVKNG 193 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH-HSCHHHHTT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh-hccHhhcce
Confidence 99999999887 568999999999999999999999875 679999999999987 8889877666 6887 488
Q ss_pred EeCcCCC
Q 005834 667 FGMAASR 673 (675)
Q Consensus 667 L~l~~c~ 673 (675)
|++++++
T Consensus 194 l~l~~N~ 200 (361)
T 2xot_A 194 LYLHNNP 200 (361)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 9998865
No 35
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.1e-13 Score=125.81 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=53.4
Q ss_pred CccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccc-cCCCCCcEEEeeCCCCCccch--hhcCCCCCCEecCc
Q 005834 569 GLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIV-GQLKKLEILSFRGSDIERLPL--EFGQLTRLQLLDLS 644 (675)
Q Consensus 569 ~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i-~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~ 644 (675)
+|++|++++|.++.+ +.++.+++|++|++++|.++. |+.+ +.+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 555555555555544 345555555555555555554 3222 555555555555555555554 45555555555555
Q ss_pred CcccCcccchh---hhhccCCccCEEeCcCC
Q 005834 645 NCRRLEVITPN---VICQSWLHLEVFGMAAS 672 (675)
Q Consensus 645 ~~~~l~~lp~~---~~~~~L~~L~~L~l~~c 672 (675)
+|. +..+|.. ++. .+++|++|+++++
T Consensus 122 ~N~-i~~~~~~~~~~~~-~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 122 RNP-VTNKKHYRLYVIY-KVPQVRVLDFQKV 150 (176)
T ss_dssp SSG-GGGSTTHHHHHHH-HCTTCSEETTEEC
T ss_pred CCC-CCCcHhHHHHHHH-HCCccceeCCCcC
Confidence 554 4444443 222 3555555555544
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=2.4e-12 Score=143.09 Aligned_cols=121 Identities=25% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEecc
Q 005834 521 GPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEY 600 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~ 600 (675)
.++.|.+..|.+..++....+++|+.|.++.|..... + .+..+++|+.|+|++|.++.+ ..++.|++|+.|+|++
T Consensus 88 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--N--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED 162 (605)
T ss_dssp TCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--G--GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS
T ss_pred CCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--c--cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC
Confidence 4444555555444444444445555555543332211 1 134444555555555554444 2344455555555555
Q ss_pred ccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcc
Q 005834 601 CRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 601 ~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~ 647 (675)
|.+.....+..+++|+.|+|++|.+..+| .+..|++|+.|++++|.
T Consensus 163 N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 163 NQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 55444222444555555555555444443 34445555555555443
No 37
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.38 E-value=2.3e-12 Score=129.33 Aligned_cols=134 Identities=27% Similarity=0.316 Sum_probs=100.8
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~ 595 (675)
+..++.+.+++|.+..++. ...+++|+.|++.++... .++...+.++++|++|++++|.++.++ ..+..+++|++
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 4568888888888877653 347888888888665433 334445778888888888888887654 56788888888
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCCc--cchhhcCCCCCCEecCcCcccCcccchh
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPN 655 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 655 (675)
|++++|.+.. +..++.+++|++|++++|.+.. +|..+..+++|++|++++|. +..+|..
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 167 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT 167 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGG
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHH
Confidence 8888888776 3357888888888888888875 67788888888888888876 5555543
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=2.6e-12 Score=138.27 Aligned_cols=151 Identities=25% Similarity=0.264 Sum_probs=121.7
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 596 (675)
..+++.|.+.+|.+..++. ...+++|+.|++..+. ....++...|.++++|++|++++|.++.+| .+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEE
Confidence 3567777777777776654 3367788888885432 223344556888999999999999999888 48899999999
Q ss_pred EeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 597 CLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 597 ~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++|. +..+|...+. .+++|+.|++++++
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFT-PLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTS-SCTTCCEEECCSSC
T ss_pred ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhc-cccCCCEEEcCCCC
Confidence 999999887 5688999999999999999987754 68899999999999986 8888888777 79999999998875
No 39
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.37 E-value=1.7e-12 Score=127.23 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=49.3
Q ss_pred hcCCCCccEEEecCCCCCCCccccccccCCC---EEEeccc-cCCC-c-ccccCCCCCc-EEEeeCCCCCccchhhcCCC
Q 005834 564 FDGTEGLRVLNFTGIHFSSLPSSLGRLINLQ---TLCLEYC-RLKD-I-VIVGQLKKLE-ILSFRGSDIERLPLEFGQLT 636 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~---~L~l~~~-~l~~-~-~~i~~l~~L~-~L~l~~~~i~~lp~~i~~L~ 636 (675)
|.++++|++|++++|.++.+|. ++.+++|+ +|++++| .+.. + ..+..+++|+ +|++++|.++.+|......+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 3444444444444444444443 44444444 4444444 4443 1 2244455555 55555555555544333334
Q ss_pred CCCEecCcCcccCcccchhhhhccC-CccCEEeCcCC
Q 005834 637 RLQLLDLSNCRRLEVITPNVICQSW-LHLEVFGMAAS 672 (675)
Q Consensus 637 ~L~~L~l~~~~~l~~lp~~~~~~~L-~~L~~L~l~~c 672 (675)
+|+.|++++|..+..+|...+. .+ ++|++|+++++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~-~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFG-GVYSGPSLLDVSQT 215 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTT-TCSBCCSEEECTTC
T ss_pred CCCEEEcCCCCCcccCCHHHhh-ccccCCcEEECCCC
Confidence 4555555554334445444443 44 55555555543
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=2.4e-12 Score=118.77 Aligned_cols=130 Identities=20% Similarity=0.254 Sum_probs=109.6
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC-c-ccccCCCCCcE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-I-VIVGQLKKLEI 617 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~-~~i~~l~~L~~ 617 (675)
..++|+.|.+.++......++. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999776543123333 367889999999999999988 779999999999999999987 4 45567999999
Q ss_pred EEeeCCCCCccc--hhhcCCCCCCEecCcCcccCcccch---hhhhccCCccCEEeCcCCC
Q 005834 618 LSFRGSDIERLP--LEFGQLTRLQLLDLSNCRRLEVITP---NVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 618 L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~~~~~L~~L~~L~l~~c~ 673 (675)
|++++|.++.+| ..+..+++|++|++++|. +..+|. ..+. .+++|++|++++|+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFK-LLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHT-TCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHH-hCccCcEecCCCCC
Confidence 999999999987 689999999999999997 777876 4565 79999999999886
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=4e-12 Score=137.24 Aligned_cols=151 Identities=21% Similarity=0.197 Sum_probs=122.3
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 596 (675)
..+++.|.+.+|.+..++. ...+++|+.|.+..+. ....++...+.++++|++|++++|.++.+| .+..+++|++|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccc-cccccccccEE
Confidence 3567788888887776654 3367888888885432 223344556888999999999999999887 48899999999
Q ss_pred EeccccCCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 597 CLEYCRLKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 597 ~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|++|.+.. +..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+. .+++|++|++++++
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFT-PLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSST-TCTTCCEEECCSSC
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhc-cccCCCEEEccCCC
Confidence 999999887 66889999999999999999877 4568899999999999986 8888888776 79999999999875
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.35 E-value=2.2e-12 Score=131.96 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=93.5
Q ss_pred CCCeEEecCCCCCcc---CCCC-cCCCccceeEecc-ccCcccccchhhhcCCCCccEEEecCCCCC-CCccccccccCC
Q 005834 520 EGPIAISLPYRGIQV---LPER-LQCPRLELLLLLE-KGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGRLINL 593 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~---~~~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L 593 (675)
.+++.+.+.++.+.. +|.. ..+++|+.|++.+ +... ..+| ..+.++++|++|++++|.++ .+|..++.+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-ccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 467777777777753 4433 3677778887753 3221 1222 23566777777777777776 567777777777
Q ss_pred CEEEeccccCCC--cccccCCCCCcEEEeeCCCCC-ccchhhcCCC-CCCEecCcCcccCcccchhhhhccCCccCEEeC
Q 005834 594 QTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLT-RLQLLDLSNCRRLEVITPNVICQSWLHLEVFGM 669 (675)
Q Consensus 594 ~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l 669 (675)
++|++++|.+.. |..++.+++|++|++++|.+. .+|..+..++ +|++|++++|.....+|..+. .++ |++|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--~l~-L~~L~L 204 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLN-LAFVDL 204 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG--GCC-CSEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh--CCc-ccEEEC
Confidence 777777777663 566777777777777777776 6777777776 777777777653224444332 233 555555
Q ss_pred cCC
Q 005834 670 AAS 672 (675)
Q Consensus 670 ~~c 672 (675)
++|
T Consensus 205 s~N 207 (313)
T 1ogq_A 205 SRN 207 (313)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=4.8e-12 Score=130.59 Aligned_cols=105 Identities=18% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCccEEEecCCCCCCC-ccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCc
Q 005834 568 EGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLS 644 (675)
Q Consensus 568 ~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 644 (675)
++|+.|++++|.++.+ |..+..+++|++|++++|.+.. +..++.+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 3455555555555433 3445555555555555555554 224555555555555555555555555555555555555
Q ss_pred CcccCcccchhhhhc-----cCCccCEEeCcCCC
Q 005834 645 NCRRLEVITPNVICQ-----SWLHLEVFGMAASR 673 (675)
Q Consensus 645 ~~~~l~~lp~~~~~~-----~L~~L~~L~l~~c~ 673 (675)
+|. +..+|...+.. ..++|+.|++++++
T Consensus 272 ~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 272 NNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 554 44454433210 12445555555543
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=2.1e-12 Score=126.68 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=93.6
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEecccc-CcccccchhhhcCCCCccEEEecC-CCCCCCc-cccccccCC
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKG-GGSMPISDHFFDGTEGLRVLNFTG-IHFSSLP-SSLGRLINL 593 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~L~~L 593 (675)
+..++.+.+.++.++.++. ...+++|+.|++..+. .. .++...|.++++|++|++++ |.++.+| ..+..+++|
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 3456667777666666554 2356677777775443 22 23333456667777777776 6666554 346667777
Q ss_pred CEEEeccccCCCcccccCCCCCc---EEEeeCC-CCCccchh-hcCCCCCC-EecCcCcccCcccchhhhhccCCccCEE
Q 005834 594 QTLCLEYCRLKDIVIVGQLKKLE---ILSFRGS-DIERLPLE-FGQLTRLQ-LLDLSNCRRLEVITPNVICQSWLHLEVF 667 (675)
Q Consensus 594 ~~L~l~~~~l~~~~~i~~l~~L~---~L~l~~~-~i~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~~~~~L~~L~~L 667 (675)
++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ .|++++|. +..+|...+. .++|++|
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~--~~~L~~L 184 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN--GTKLDAV 184 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT--TCEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC--CCCCCEE
Confidence 77777777766633366666666 7777777 66666653 66677777 77777665 5566666554 3667777
Q ss_pred eCcCCC
Q 005834 668 GMAASR 673 (675)
Q Consensus 668 ~l~~c~ 673 (675)
++++|+
T Consensus 185 ~L~~n~ 190 (239)
T 2xwt_C 185 YLNKNK 190 (239)
T ss_dssp ECTTCT
T ss_pred EcCCCC
Confidence 776664
No 45
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=5.9e-11 Score=125.20 Aligned_cols=293 Identities=14% Similarity=0.099 Sum_probs=175.9
Q ss_pred cccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEeCCCCCHHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED----KLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
..++||+++++.+..++. ....+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 578999999999999884 3456789999999999999999999877432 11124678888888889999999
Q ss_pred HHHHhCCCcccC-cCHHHHHHHHHHHHhc-cCeEEEEecCccccccc----ccccCCCCccccccccC---CCCeEEEEe
Q 005834 231 LASDLGIKFELN-ESIFDRANRLCRVLKN-EERHLIILDNIWGELKF----DEVGIPSGDVKKERMDD---QRRCTIILT 301 (675)
Q Consensus 231 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~----~~~~~~~~~~~~~~~~~---~~~s~ilvT 301 (675)
++..++...... .+..+....+.+.+.. +++.+||||+++..... +.+...+.. ... ..+..+|.|
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-----~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRI-----NQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHG-----GGCC-----CEEEEE
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhc-----hhhcCCCceEEEEEE
Confidence 999997654322 2345556677777643 46899999999764321 111100000 001 445677777
Q ss_pred ccchhHH----hhhcCCc--ceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHhC---CChh-HHHHHHHHH
Q 005834 302 SRRQDLL----RNVMNSQ--KEIQIDALSKEEALHLFQKIVGD-SMKTSAFQPIAHEIVGRCG---ELPV-ALITLAKAL 370 (675)
Q Consensus 302 tR~~~va----~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~L 370 (675)
|+..... ....... ..+.+++++.++..+++...+.. .....--.+..+.+++.++ |.|- ++..+....
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 7665221 1111122 47999999999999999987541 0111112346788889998 9994 333333322
Q ss_pred h-----c---CChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhc-CcCCCCccchhhHHHHH
Q 005834 371 K-----N---MSLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCG-LFSEGHAIPVSSLLRYG 441 (675)
Q Consensus 371 ~-----~---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s-~fp~~~~i~~~~Li~~W 441 (675)
. + .+.+.+..++.... ...+.-++..||++ .+..+...+ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 1 1 15566666555431 11244456778876 555555444 34322345555444432
Q ss_pred Hh--cccccCCCChHHHHHHHHHHHHHHHHhccccC
Q 005834 442 MG--MGYFRNVYTPEEARSTVHTLISKLKSSCLLLD 475 (675)
Q Consensus 442 ~a--eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 475 (675)
.. +..-... .....+..+++.|...+++..
T Consensus 319 ~~~~~~~~~~~----~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 319 KELTSTLGLEH----VTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHTTCCC----CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCC----CCHHHHHHHHHHHHhCCCeEE
Confidence 11 1100000 122455668888999999864
No 46
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2.8e-11 Score=127.66 Aligned_cols=287 Identities=15% Similarity=0.079 Sum_probs=174.6
Q ss_pred cccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc----CC--CCeEEEEEeCCCC-CHHHH
Q 005834 159 EAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED----KL--FDKVAMAEVTENP-DHQKI 227 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 227 (675)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... .. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 578999999999887775 3456789999999999999999999976432 11 2357788887777 88889
Q ss_pred HHHHHHHh-CCCccc-CcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccc-cCCCCccccccccCCCCeEEEEec
Q 005834 228 QDKLASDL-GIKFEL-NESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEV-GIPSGDVKKERMDDQRRCTIILTS 302 (675)
Q Consensus 228 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~-~~~~~~~~~~~~~~~~~s~ilvTt 302 (675)
+..++..+ +..... .....+....+.+.+... +.+|||||++.... +... ...+ +....+..+|+||
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l-------~~~~~~~~iI~~t 171 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQL-------LRSDANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHH-------HTSSSCEEEEEEC
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHH-------hcCCcceEEEEEE
Confidence 99988887 332221 222345566777777653 44999999976432 1111 1111 1122678888888
Q ss_pred cchhH----Hhhh-cCCcceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHhC---CChh-HHHHHHHHHh-
Q 005834 303 RRQDL----LRNV-MNSQKEIQIDALSKEEALHLFQKIVGD-SMKTSAFQPIAHEIVGRCG---ELPV-ALITLAKALK- 371 (675)
Q Consensus 303 R~~~v----a~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~L~- 371 (675)
+.... .... ......+.+++++.++..++|...+.. .....--.+..+.+++.++ |.|. ++..+-....
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 86521 1111 111238999999999999999988641 1111222457788999998 9887 4444433331
Q ss_pred -----cCChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcCCCCccchhhHHHHHHhccc
Q 005834 372 -----NMSLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSEGHAIPVSSLLRYGMGMGY 446 (675)
Q Consensus 372 -----~~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~aeg~ 446 (675)
..+.+.+..+++.... ..+..++..|+++ .+..+..++....+..+. +......-..|
T Consensus 252 a~~~~~i~~~~v~~~~~~~~~--------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g- 314 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYEQ--------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK- 314 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHHH--------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-
T ss_pred hcCCCccCHHHHHHHHHHHhc--------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-
Confidence 1266777766655321 2344566778876 666665555511101111 11111111112
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHhccccC
Q 005834 447 FRNVYTPEEARSTVHTLISKLKSSCLLLD 475 (675)
Q Consensus 447 i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 475 (675)
+ ... ....+.++++.|...+++..
T Consensus 315 ~-~~~----~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 315 Q-KPL----SYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp C-CCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred C-CCC----CHHHHHHHHHHHHhCCCEEE
Confidence 1 111 12356678889999999964
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.34 E-value=4.7e-12 Score=127.08 Aligned_cols=151 Identities=18% Similarity=0.153 Sum_probs=113.6
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC--CccccccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS--LPSSLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~L~~L~ 594 (675)
...++.+.+.+|.+..++. ...+++|+.|.+..+.... .+...+..+++|++|++++|.++. +|..++.+++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc--cCchhcccCCCCCEEECcCCccceecCchhhccCCCCC
Confidence 3467778888877766543 3467888888886554332 222236778888888888888875 678888888888
Q ss_pred EEEeccccCCC--cccccCCCCCc----EEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEe
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLE----ILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFG 668 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~----~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~ 668 (675)
+|++++|++.. +..+..+.+|+ +|++++|.+..+|.......+|+.|++++|. +..+|..++. .+++|++|+
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~ 230 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFD-RLTSLQKIW 230 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTT-TCCSCCEEE
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhc-ccccccEEE
Confidence 88888888776 34566555555 7888888888888776667789999999987 8889888776 799999999
Q ss_pred CcCCC
Q 005834 669 MAASR 673 (675)
Q Consensus 669 l~~c~ 673 (675)
+++++
T Consensus 231 l~~N~ 235 (276)
T 2z62_A 231 LHTNP 235 (276)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 99543
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.34 E-value=5.7e-12 Score=136.09 Aligned_cols=149 Identities=22% Similarity=0.279 Sum_probs=95.6
Q ss_pred CCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecC-CCCCCCcc-ccccccCCCE
Q 005834 520 EGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTG-IHFSSLPS-SLGRLINLQT 595 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~-~i~~L~~L~~ 595 (675)
.+++.|.+.+|.+..++.. ..+++|+.|++..|... .++...|.++++|+.|++++ +.+..+|. .+..+++|++
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE--SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc--eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 3455555555555554432 24556666666444322 23333455666666666665 33344433 4667777777
Q ss_pred EEeccccCCCcccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 596 LCLEYCRLKDIVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 596 L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|++++|+++..+.+..+++|++|+|++|.+..+ |..+..+++|+.|++++|. +..++...+. .+++|++|++++|
T Consensus 201 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N 276 (452)
T 3zyi_A 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHN 276 (452)
T ss_dssp EECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSS
T ss_pred EECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCC
Confidence 777777777766677778888888888877766 5567888888888888876 6666555555 6888888888876
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.33 E-value=3.4e-12 Score=130.21 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=106.7
Q ss_pred cCCCeEEecCCCCCccCCC---CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC--CccccccccCC
Q 005834 519 QEGPIAISLPYRGIQVLPE---RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS--LPSSLGRLINL 593 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~L~~L 593 (675)
...++.+.+.+|.+..++. ...+++|+.|.+..+... ......+.++++|++|++++|.+.. +|..+..+++|
T Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE--ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC--ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 4567777777777766543 346778888888655432 2333446777888888888887764 67778888888
Q ss_pred CEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccC-CccCEEeC
Q 005834 594 QTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSW-LHLEVFGM 669 (675)
Q Consensus 594 ~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L-~~L~~L~l 669 (675)
++|++++|.+.. +..++.+++|++|++++|.+..+|. .+..+++|++|++++|. +...+...+. .+ ++|++|++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~~~~~L~~L~L 255 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQ-HFPSSLAFLNL 255 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCC-CCCTTCCEEEC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC-CcccCHHHHH-hhhccCCEEEc
Confidence 888888888776 4577788888888888888877765 57778888888888876 4444333333 46 48888888
Q ss_pred cCCC
Q 005834 670 AASR 673 (675)
Q Consensus 670 ~~c~ 673 (675)
++++
T Consensus 256 ~~N~ 259 (306)
T 2z66_A 256 TQND 259 (306)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8764
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.33 E-value=4.6e-12 Score=120.18 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=109.5
Q ss_pred cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCc
Q 005834 539 LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLE 616 (675)
Q Consensus 539 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~ 616 (675)
.++++|+.|.+.++.... ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~--l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD--LT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSC--CT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccC--hH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 467899999997765443 33 2778999999999999887765 78999999999999999986 88999999999
Q ss_pred EEEeeCCCCCc-cchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 617 ILSFRGSDIER-LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 617 ~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|++++|.+.. .|..++.+++|++|++++|..+..+|. +. .+++|++|++++|.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~-~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LK-TLPELKSLNIQFDG 170 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GG-GCSSCCEEECTTBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hc-CCCCCCEEECCCCC
Confidence 99999999985 678899999999999999976888873 44 69999999999885
No 51
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.33 E-value=1.3e-11 Score=128.25 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=108.8
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.++.+..++....+++|+.|.+.++.....+ . +..+++|+.|++++|.++.++ .+..+++|++|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~--~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l 272 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS--P--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNV 272 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEEC
T ss_pred CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc--c--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEc
Confidence 4567777777777766665567788888888665433222 2 677888888888888887764 5778888888888
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.+...+.+..+++|++|++++|.+... |..+..+++|++|++++|. +..+|+ +. .+++|++|++++|+
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~--~~-~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LA-SLSKMDSADFANQV 344 (347)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG--GG-GCTTCSEESSSCC-
T ss_pred cCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC--hh-hhhccceeehhhhc
Confidence 888888766788888888888888888754 4568888888888888887 666655 33 58888888888875
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.32 E-value=9e-12 Score=137.14 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=126.2
Q ss_pred cCCCeEEecCCCCCcc-CC-CCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-Cccc-cccccCCC
Q 005834 519 QEGPIAISLPYRGIQV-LP-ERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSS-LGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~-i~~L~~L~ 594 (675)
...++.+.+++|.+.. .| ....+++|+.|.+..|.....+..+..+..+++|++|++++|.+.. +|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4678899999998876 33 3458999999999777654433323457899999999999999997 8765 78899999
Q ss_pred EEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+|++++|.+.. |..+. ++|++|++++|.++.+|..+..+++|++|++++|. +..+|...+. .+++|++|+++++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~L~~L~l~~N 478 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFD-RLTSLQKIWLHTN 478 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCHHHhc-cCCcccEEECcCC
Confidence 99999999876 44443 79999999999999999999999999999999997 8889987555 7999999999987
Q ss_pred C
Q 005834 673 R 673 (675)
Q Consensus 673 ~ 673 (675)
+
T Consensus 479 ~ 479 (520)
T 2z7x_B 479 P 479 (520)
T ss_dssp C
T ss_pred C
Confidence 5
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.32 E-value=5.2e-12 Score=141.87 Aligned_cols=150 Identities=26% Similarity=0.294 Sum_probs=120.3
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~ 595 (675)
+..++.+.+++|.+..++. ...+++|+.|+++++... .+++..|.++++|++|++++|.++.+ |..++.+++|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 5789999999999987765 448999999999766533 34455688999999999999999977 888999999999
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCC--ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccC----EE
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIE--RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE----VF 667 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~----~L 667 (675)
|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...+. .+++|+ +|
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~~l~~L 186 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ-FLRENPQVNLSL 186 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTH-HHHHCTTCCCEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhh-hhhcccccccee
Confidence 9999999887 468999999999999999987 579999999999999999986 5555543332 344333 55
Q ss_pred eCcCC
Q 005834 668 GMAAS 672 (675)
Q Consensus 668 ~l~~c 672 (675)
+++++
T Consensus 187 ~l~~n 191 (606)
T 3vq2_A 187 DMSLN 191 (606)
T ss_dssp ECTTC
T ss_pred eccCC
Confidence 55544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.7e-12 Score=132.81 Aligned_cols=149 Identities=23% Similarity=0.285 Sum_probs=80.0
Q ss_pred CCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEE
Q 005834 520 EGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTL 596 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L 596 (675)
..++.+.+.+|.+..++. ...+++|+.|++.++... ..+...+.++++|++|++++|.++.+|.. ++.+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 356666666666665544 335666666666544322 22233355566666666666666655544 5566666666
Q ss_pred EeccccCCC-cc--cccCCCCCcEEEeeCC-CCCccc-hhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 597 CLEYCRLKD-IV--IVGQLKKLEILSFRGS-DIERLP-LEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 597 ~l~~~~l~~-~~--~i~~l~~L~~L~l~~~-~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
++++|++.. +. .++.+++|++|++++| .+..+| ..+..+++|++|++++|. +..+++..+. .+++|++|++++
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~ 207 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLK-SIQNVSHLILHM 207 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTT-TCSEEEEEEEEC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHh-ccccCCeecCCC
Confidence 666666555 22 4556666666666665 344443 345555666666665554 3333222222 355555555544
Q ss_pred C
Q 005834 672 S 672 (675)
Q Consensus 672 c 672 (675)
|
T Consensus 208 n 208 (353)
T 2z80_A 208 K 208 (353)
T ss_dssp S
T ss_pred C
Confidence 3
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=7.9e-12 Score=134.44 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=118.3
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCC-CCCCCcc-ccccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGI-HFSSLPS-SLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~-~i~~L~~L~ 594 (675)
..+++.|.+.+|.+..++. ...+++|+.|++..|... .++...|.++++|+.|++++| .+..+|. .+..+++|+
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE--SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC--EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc--ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 4567888888888877765 347788888888665533 344455778888888888874 4555543 578889999
Q ss_pred EEEeccccCCCcccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 595 TLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 595 ~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|++++|.++..+.+..+++|++|+|++|.++.+ |..+..+++|+.|++++|. +..++...+. .+++|++|++++|.
T Consensus 189 ~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 189 YLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFD-NLQSLVEINLAHNN 266 (440)
T ss_dssp EEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSST-TCTTCCEEECTTSC
T ss_pred eecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhc-CCCCCCEEECCCCC
Confidence 9999999988877788999999999999998877 5678899999999999987 7777766666 79999999998873
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.32 E-value=1.9e-11 Score=126.99 Aligned_cols=145 Identities=20% Similarity=0.227 Sum_probs=99.1
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.+|.+..++....+++|++|++..+..... + .+.++++|++|++++|.+..+|. +..+++|++|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence 456777777777776666555677777777755543222 1 26677777777777777776665 677777777777
Q ss_pred cccc-CCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCR-LKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~-l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|. +..+..+..+++|++|++++|.+..+|. +..+++|++|++++|. +..++. +. .+++|++|++++|.
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~-~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LA-SLTSLHYFTAYVNQ 210 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GG-GCTTCCEEECCSSC
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--cc-CCCccceeecccCC
Confidence 7774 4445667777777777777777777665 7777778888887775 666665 33 57788888777653
No 57
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=116.79 Aligned_cols=120 Identities=25% Similarity=0.375 Sum_probs=71.0
Q ss_pred EEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCEEEecccc
Q 005834 524 AISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQTLCLEYCR 602 (675)
Q Consensus 524 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 602 (675)
.+.+.++.+..+|... .++|+.|.+..+... .++ ..+.++++|++|++++|.++.++ ..+..+++|++|+|++|+
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~--~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT--LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCC--SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc--hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4556666666666432 346666666554433 222 23556666666666666666553 346666666666666666
Q ss_pred CCC--cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcc
Q 005834 603 LKD--IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCR 647 (675)
Q Consensus 603 l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 647 (675)
++. +..+..+++|++|+|++|.++.+|.. +..+++|++|++++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 665 33466666666666666666666553 5566666666666654
No 58
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=5.3e-12 Score=125.60 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=116.8
Q ss_pred CeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccc
Q 005834 522 PIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 522 ~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~ 601 (675)
+..+.+..+.+..++....+++|+.|.+.++.....+ .+..+++|+.|++++|.++.+|. ++.+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 3344456666666665568899999999776544332 37789999999999999999887 999999999999999
Q ss_pred cCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 602 RLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 602 ~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++..+.+.. .+|++|++++|.++.+| .+..+++|++|++++|. +..+| . +. .+++|++|++++|.
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~-l~-~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-M-LG-FLSKLEVLDLHGNE 161 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-G-GG-GCTTCCEEECTTSC
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-H-Hc-cCCCCCEEECCCCc
Confidence 9998555555 99999999999999987 59999999999999987 77787 3 44 69999999999874
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=4e-12 Score=129.65 Aligned_cols=152 Identities=26% Similarity=0.324 Sum_probs=84.6
Q ss_pred cCCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccc--------
Q 005834 519 QEGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLG-------- 588 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~-------- 588 (675)
+..++.+.+.++.+..++.. ..+++|+.|++..+...........+..+++|++|++++|.+..+|..+.
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 45677888888777776653 36777888887655433221111123344555555555555444444444
Q ss_pred -----------------cccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCc--cchhhcCCCCCCEecCcCcc
Q 005834 589 -----------------RLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 589 -----------------~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~ 647 (675)
.+++|++|++++|.+.. +..++.+++|++|++++|.+.. +|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 44455555555554433 3345555566666666655543 55556666666666666665
Q ss_pred cCcccchhhhhccCCccCEEeCcCC
Q 005834 648 RLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 648 ~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+..+++..+. .+++|++|++++|
T Consensus 187 -l~~~~~~~~~-~l~~L~~L~L~~N 209 (306)
T 2z66_A 187 -LEQLSPTAFN-SLSSLQVLNMSHN 209 (306)
T ss_dssp -CCEECTTTTT-TCTTCCEEECTTS
T ss_pred -cCCcCHHHhc-CCCCCCEEECCCC
Confidence 4445433333 4667777776665
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.31 E-value=4.9e-12 Score=129.71 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=107.5
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-cccc-ccccCCCEEE
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSL-GRLINLQTLC 597 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i-~~L~~L~~L~ 597 (675)
..++.+.+.+|.+..++.. .+++|+.|.+..+.... .+...+..+++|++|++++|.++.+ |..+ ..+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC-CCSSCEEEECCSSCCCS--GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc-ccCCCCEEECCCCCCCC--ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 4667777777777655432 36778888886554332 2233466778888888888888764 4444 4678888888
Q ss_pred eccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|.++..+....+++|++|++++|.++.+|..+..+++|++|++++|. +..+|..+. .+++|++|++++|+
T Consensus 176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~--~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR--FSQNLEHFDLRGNG 248 (317)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC--CCTTCCEEECTTCC
T ss_pred CCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhh--cCCCCCEEEccCCC
Confidence 88888877555556888888888888888888888888888888888876 777877654 58888888888765
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=4.7e-11 Score=125.90 Aligned_cols=296 Identities=16% Similarity=0.155 Sum_probs=171.4
Q ss_pred ccccccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC-CCeEEEEEeCCCCCHHHHHHHHH
Q 005834 158 YEAFDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL-FDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
+..|+||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+.+....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999887 345678999999999999999999998754311 12567888777777888888888
Q ss_pred HHhCCCccc-CcCHHHHHHHHHHHHhc-cCeEEEEecCccccccc--ccccCCCCccccccccCCCCeEEEEeccchhHH
Q 005834 233 SDLGIKFEL-NESIFDRANRLCRVLKN-EERHLIILDNIWGELKF--DEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL 308 (675)
Q Consensus 233 ~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~~--~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va 308 (675)
..++..... ..+..+....+.+.+.. +++.+||+|+++..... ......+....... ...+..+|+||+.....
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--NKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--CC--EEEEEEESCGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--CCCeEEEEEEECCCChH
Confidence 888654331 12344556666666653 34899999999764211 11100000000000 22355677777755321
Q ss_pred hh----hcC--CcceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHhC---CChhHHHHHHHHH-h-----c
Q 005834 309 RN----VMN--SQKEIQIDALSKEEALHLFQKIVGD-SMKTSAFQPIAHEIVGRCG---ELPVALITLAKAL-K-----N 372 (675)
Q Consensus 309 ~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPLai~~~~~~L-~-----~ 372 (675)
.. ... ....+.+++++.++..+++...+.. .....-..++.+.+++.++ |.|..+..+.... . +
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 10 111 1148999999999999999987541 1112233567788888888 9998444333222 1 1
Q ss_pred ---CChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcCC-C-CccchhhHHHHHH--hcc
Q 005834 373 ---MSLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFSE-G-HAIPVSSLLRYGM--GMG 445 (675)
Q Consensus 373 ---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp~-~-~~i~~~~Li~~W~--aeg 445 (675)
.+.+.+..++.... ...+.-.+..+|++ .+..+..++..-+ + ..+....+.+... ++.
T Consensus 257 ~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp CSSCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 14555555544421 12344456677766 5555555542211 1 1233433322211 111
Q ss_pred c-ccCCCChHHHHHHHHHHHHHHHHhccccC
Q 005834 446 Y-FRNVYTPEEARSTVHTLISKLKSSCLLLD 475 (675)
Q Consensus 446 ~-i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 475 (675)
+ +.. -....+..+++.|...+++..
T Consensus 322 ~g~~~-----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 322 LGVEA-----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HTCCC-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCCC-----CCHHHHHHHHHHHHhCCCEEE
Confidence 0 000 012345567888889999853
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=7.4e-12 Score=129.27 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=94.2
Q ss_pred CCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCC--------------------CCccEEEecC
Q 005834 520 EGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGT--------------------EGLRVLNFTG 577 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l--------------------~~L~~L~l~~ 577 (675)
..++.+.+.+|.+..++.. ..+++|+.|.+..+...........+..+ ++|+.|++++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence 3455666666655555442 34566666666544332111212222222 4566666666
Q ss_pred CCCCCCc-cccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccch
Q 005834 578 IHFSSLP-SSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITP 654 (675)
Q Consensus 578 ~~~~~lp-~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 654 (675)
|.++.++ ..+..+++|++|++++|.+.. +..++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+|.
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~ 281 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGV 281 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccCh
Confidence 6666553 557777777777777777766 336777777888888877777777777777778888887776 666665
Q ss_pred hhhhcc------CCccCEEeCcCCC
Q 005834 655 NVICQS------WLHLEVFGMAASR 673 (675)
Q Consensus 655 ~~~~~~------L~~L~~L~l~~c~ 673 (675)
..+. . .++|++|++++++
T Consensus 282 ~~~~-~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 282 NDFC-PVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TSSS-CSSCCSSSCCBSEEECCSSS
T ss_pred hHcc-ccccccccccccceEeecCc
Confidence 4443 2 3567777777765
No 63
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.2e-11 Score=129.16 Aligned_cols=146 Identities=18% Similarity=0.227 Sum_probs=121.0
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhc-CCCCccEEEecCCCCCCCc-cccccccCCCEEEecc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFD-GTEGLRVLNFTGIHFSSLP-SSLGRLINLQTLCLEY 600 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~ 600 (675)
+.+.+.++.+..+|... .+.++.|+++.|... .++...+. ++++|+.|+|++|.++.+| ..+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777788888888643 456899999776543 34444566 8999999999999999875 5699999999999999
Q ss_pred ccCCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhh---hccCCccCEEeCcCCC
Q 005834 601 CRLKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVI---CQSWLHLEVFGMAASR 673 (675)
Q Consensus 601 ~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~---~~~L~~L~~L~l~~c~ 673 (675)
|++.. +..+..+.+|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..++ . .+++|++|+++++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~-~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGN-KLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC-----CTTCCEEECCSSC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcc-cCCcCCEEECCCCC
Confidence 99988 34689999999999999999987 5579999999999999987 888998875 3 59999999999864
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.30 E-value=4.4e-12 Score=132.25 Aligned_cols=151 Identities=20% Similarity=0.177 Sum_probs=129.4
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc--ccccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS--SLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~L~~L~ 594 (675)
..+++.+.+.+|.+..++. ...+++|+.|++..+... .++...+.++++|++|++++|.++.+|. .+..+++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC--cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 4678999999999987643 457899999999766543 4566668899999999999999999886 689999999
Q ss_pred EEEecccc-CCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCc
Q 005834 595 TLCLEYCR-LKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMA 670 (675)
Q Consensus 595 ~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~ 670 (675)
+|++++|. +.. +..++++++|++|++++|.+..+ |..+..+++|++|++++|. +..+|..... .+++|++|+++
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~L~ 230 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD-VTSSVECLELR 230 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHH-HTTTEEEEEEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhh-hcccccEEECC
Confidence 99999995 665 46889999999999999999876 7789999999999999987 7888887776 69999999998
Q ss_pred CCC
Q 005834 671 ASR 673 (675)
Q Consensus 671 ~c~ 673 (675)
+|.
T Consensus 231 ~n~ 233 (353)
T 2z80_A 231 DTD 233 (353)
T ss_dssp SCB
T ss_pred CCc
Confidence 874
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=5.8e-12 Score=137.01 Aligned_cols=148 Identities=15% Similarity=0.114 Sum_probs=116.8
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-Cccccc-cccCCCEEE
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSSLG-RLINLQTLC 597 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~-~L~~L~~L~ 597 (675)
..++.+.+.+|.+..++.. .+++|+.|.+.+|.... .++..+.++++|++|++++|.++. .|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKITM--LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC-CCSSCEEEECCSSCCCS--GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc-ccCCCCEEECCCCCCCC--CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 5677888888877765542 46888888886665332 223346778899999999999885 466665 789999999
Q ss_pred eccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|++|.++..+....+++|++|+|++|.++.+|..+..+++|+.|++++|. +..+|..+. .+++|++|++++|+
T Consensus 176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~--~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR--FSQNLEHFDLRGNG 248 (487)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC--CCTTCCEEECTTCC
T ss_pred cCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchhhc--cCCCCCEEEcCCCC
Confidence 99999888666667899999999999999998889999999999999987 777887754 58899999998875
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=134.63 Aligned_cols=149 Identities=21% Similarity=0.255 Sum_probs=77.4
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 595 (675)
+..++.|.+.+|.+..++. ...+++|+.|++..+... ...+..|.++++|++|++++|.++.+|.. ++.+++|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 3456666666666655432 235666666666544322 22223355566666666666666655433 455666666
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCCccc-hhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLP-LEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
|+|++|.+.. +..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..+|...+. ++++|+.|++++
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~ 185 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALS-HLHGLIVLRLRH 185 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHT-TCTTCCEEEEES
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhc-ccCCCcEEeCCC
Confidence 6666665554 334555555555555555555442 245555555555555543 4444444333 344444444443
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=4.4e-11 Score=117.31 Aligned_cols=202 Identities=11% Similarity=0.151 Sum_probs=118.6
Q ss_pred ccCccccccHHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
+.....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+.. ........ ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhc
Confidence 3345578999999999999987543 458999999999999999999987754321110 00000000 000100
Q ss_pred HhCCCc---c-cCcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEecc
Q 005834 234 DLGIKF---E-LNESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSR 303 (675)
Q Consensus 234 ~l~~~~---~-~~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR 303 (675)
...... . ......+....+.+.+. .+++.+||+||++... .++.+...+.. ...+..+|+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-------~~~~~~~i~~t~ 164 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATT 164 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-------CCTTEEEEEEES
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc-------CCCceEEEEEeC
Confidence 000000 0 00011112222222221 2467999999996542 23333222211 345778888886
Q ss_pred chhHH-hhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 304 RQDLL-RNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 304 ~~~va-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
..... .........+++++++.++..+++...+.... ..--.+..+.|++.|+|.|..+..+...+.
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 64321 22233456899999999999999998875321 122246788999999999998887765543
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=137.87 Aligned_cols=151 Identities=24% Similarity=0.279 Sum_probs=123.4
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~ 595 (675)
+..++++.+++|.+..++. ...+++|++|+++++... .++...|.++++|++|++++|.++.+| ..++.+++|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5679999999999987653 458999999999766533 345566889999999999999998764 67999999999
Q ss_pred EEeccccCCC-c-ccccCCCCCcEEEeeCCCCCc--cchhhcCCCCCCEecCcCcccCcccchhhhhccCCcc----CEE
Q 005834 596 LCLEYCRLKD-I-VIVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHL----EVF 667 (675)
Q Consensus 596 L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L----~~L 667 (675)
|++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+. .+++| ++|
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~~~~~L 182 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR-VLHQMPLLNLSL 182 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH-HHHTCTTCCCEE
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc-chhccchhhhhc
Confidence 9999999887 3 369999999999999999885 78999999999999999987 6666554444 47777 777
Q ss_pred eCcCCC
Q 005834 668 GMAASR 673 (675)
Q Consensus 668 ~l~~c~ 673 (675)
++++++
T Consensus 183 ~l~~n~ 188 (570)
T 2z63_A 183 DLSLNP 188 (570)
T ss_dssp ECTTCC
T ss_pred ccCCCC
Confidence 777653
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=2.8e-10 Score=120.11 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=185.5
Q ss_pred cccccHHHHHHHHHHHhcc----CCcc--EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEALKD----DKLN--IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
..++||+++++.+.+++.. .... .+.|+|++|+||||+++.+++...... -..++|+.++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999988863 3334 899999999999999999999876431 12567888888888889999999
Q ss_pred HHhCCCccc-CcCHHHHHHHHHHHHhc-cCeEEEEecCccccc--ccccccCCCCcccccccc-CCCCeEEEEeccchhH
Q 005834 233 SDLGIKFEL-NESIFDRANRLCRVLKN-EERHLIILDNIWGEL--KFDEVGIPSGDVKKERMD-DQRRCTIILTSRRQDL 307 (675)
Q Consensus 233 ~~l~~~~~~-~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~ilvTtR~~~v 307 (675)
..++..... .....+....+.+.+.. +++.+||||+++... ....+...+.. .-. ...+..||++|+....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~----~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE----ADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC----HHHHSSCCEEEEEEESSTHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh----CCCCCcCCEEEEEEECCchH
Confidence 998765431 22344555556555542 458999999997652 11222111110 000 0146778888776533
Q ss_pred Hhhhc----C--CcceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHh---------CCChhHHHHHHHHHh
Q 005834 308 LRNVM----N--SQKEIQIDALSKEEALHLFQKIVGD-SMKTSAFQPIAHEIVGRC---------GELPVALITLAKALK 371 (675)
Q Consensus 308 a~~~~----~--~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c---------~GlPLai~~~~~~L~ 371 (675)
..... . ....+.+++++.++..+++...+.. .....--.+..+.+++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21110 0 1236999999999999999887642 111122356788999999 788755444433221
Q ss_pred ------cC---ChHHHHHHHHHHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCcC---CCCccchhhHHH
Q 005834 372 ------NM---SLETWKYVLRQLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLFS---EGHAIPVSSLLR 439 (675)
Q Consensus 372 ------~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~fp---~~~~i~~~~Li~ 439 (675)
+. +.+....+..... ...+.-.+..||.+ .+.++..++.+. .+..+....+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 11 2233333322211 01122235567776 677776666544 221356666655
Q ss_pred HHHh----cccccCCCChHHHHHHHHHHHHHHHHhccccCC------CCCCc-------ccccHHHHHHHHHHhhh
Q 005834 440 YGMG----MGYFRNVYTPEEARSTVHTLISKLKSSCLLLDG------DAEDE-------VKMHDVIRVVAVSIAKE 498 (675)
Q Consensus 440 ~W~a----eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~------~~~~~-------~~mHdlv~~~a~~~~~~ 498 (675)
.+-. .|. . . -....+..++++|...+++... +..++ +..|+++..+...+..+
T Consensus 317 ~~~~~~~~~~~-~---~--~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 317 SYKIVCEEYGE-R---P--RVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHHHHHTTC-C---C--CCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-C---C--CCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 4432 111 0 0 0124566789999999999642 11122 23566666666555443
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.28 E-value=1.3e-11 Score=133.42 Aligned_cols=133 Identities=25% Similarity=0.403 Sum_probs=110.5
Q ss_pred cCCCeEEecCCCCCccCC-C-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLP-E-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~ 595 (675)
+..++++.+++|.+..++ . ...+++|+.|++..+... ..++...|.++++|++|++++|.++.+ |..++.+++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 578999999999998763 2 358999999999766432 234455688999999999999999865 788999999999
Q ss_pred EEeccccCCC--ccc--ccCCCCCcEEEeeCCCCCcc-chh-hcCCCCCCEecCcCcccCcccc
Q 005834 596 LCLEYCRLKD--IVI--VGQLKKLEILSFRGSDIERL-PLE-FGQLTRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 596 L~l~~~~l~~--~~~--i~~l~~L~~L~l~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~l~~lp 653 (675)
|++++|.+.. +.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++|. +..++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 170 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSIC 170 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccC
Confidence 9999999987 554 89999999999999999977 555 8999999999999987 44443
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.28 E-value=1.4e-11 Score=130.16 Aligned_cols=147 Identities=22% Similarity=0.165 Sum_probs=118.8
Q ss_pred cCCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~ 595 (675)
..+++.+.+.++.+..+|.. ..+++|+.|++.++... ..+...+..+++|++|++++|.++.+ |..++.+++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 57789999999998888874 37899999999766533 34444588899999999999999877 455899999999
Q ss_pred EEeccccCCC-ccc-ccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 596 LCLEYCRLKD-IVI-VGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 596 L~l~~~~l~~-~~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|++++|.+.. |.. ++++++|++|++++|.+..+|. .+..+++|++|++++|. +..++. . .+++|++|+++++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~-~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---S-LIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---G-GCTTCSEEECCSS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc---c-cccccceeecccc
Confidence 9999999888 544 5899999999999999988755 58899999999999987 666653 2 4777777777665
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=1.3e-11 Score=111.25 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=106.9
Q ss_pred cCCCeEEecCCCCCc--cCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-CccccccccCCC
Q 005834 519 QEGPIAISLPYRGIQ--VLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSSLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~ 594 (675)
+.+++.+.+.+|.+. .+|.. ..+++|+.|.+..+..... ..+..+++|++|++++|.++. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 567899999999998 67765 4789999999977654433 447889999999999999997 788888899999
Q ss_pred EEEeccccCCC-c--ccccCCCCCcEEEeeCCCCCccch----hhcCCCCCCEecCcC
Q 005834 595 TLCLEYCRLKD-I--VIVGQLKKLEILSFRGSDIERLPL----EFGQLTRLQLLDLSN 645 (675)
Q Consensus 595 ~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~~ 645 (675)
+|++++|.++. + ..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999988 3 789999999999999999998886 689999999999863
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=2.8e-11 Score=117.64 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=111.2
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 595 (675)
+..++.+.+++|.+..++. ...+++|+.|++.+|.. ..++...|.++++|++|+|++|.++.+|.. +..+++|++
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 5789999999999988744 34789999999977664 345556688999999999999999988655 689999999
Q ss_pred EEeccccCCC-cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcc
Q 005834 596 LCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 596 L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 647 (675)
|+|++|++.. |..+..+++|++|+|++|.++.+|. .+..+++|++|++++|+
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999998 7889999999999999999999986 58899999999999987
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=2e-11 Score=135.37 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=100.3
Q ss_pred CCCeEEecCCCCCccC-----CCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCC
Q 005834 520 EGPIAISLPYRGIQVL-----PERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQ 594 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~ 594 (675)
..++.+.+++|.+... .....+++|+.|++..|.....+.....+..+++|++|++++|.++.+|..++.+++|+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence 4555666666655431 11234566666666554432222112335566666666666666666666666666666
Q ss_pred EEEeccccCCC-ccc------------------ccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchh
Q 005834 595 TLCLEYCRLKD-IVI------------------VGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPN 655 (675)
Q Consensus 595 ~L~l~~~~l~~-~~~------------------i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 655 (675)
+|++++|.+.. +.. ++.+++|++|++++|+++.+|. ...+++|+.|++++|. +..+|+.
T Consensus 414 ~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~-l~~~~~~ 491 (549)
T 2z81_A 414 FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQ-LKSVPDG 491 (549)
T ss_dssp EEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-CCCCCTT
T ss_pred EEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCc-cCCcCHH
Confidence 66666666543 111 2478899999999999999997 5789999999999986 7778777
Q ss_pred hhhccCCccCEEeCcCCC
Q 005834 656 VICQSWLHLEVFGMAASR 673 (675)
Q Consensus 656 ~~~~~L~~L~~L~l~~c~ 673 (675)
.+. .+++|++|++++|+
T Consensus 492 ~~~-~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 492 IFD-RLTSLQKIWLHTNP 508 (549)
T ss_dssp GGG-GCTTCCEEECCSSC
T ss_pred HHh-cCcccCEEEecCCC
Confidence 665 79999999999886
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.27 E-value=2.3e-11 Score=135.15 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=125.4
Q ss_pred cCCCeEEecCCCCCcc-CCC-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-Cccc-cccccCCC
Q 005834 519 QEGPIAISLPYRGIQV-LPE-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSS-LGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~-i~~L~~L~ 594 (675)
...++.+.+.+|.+.. .+. ...+++|+.|++..+.....+..+..+.++++|+.|++++|.++. +|.. +..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 4678899999998876 333 357999999999776654333223457889999999999999986 7765 78899999
Q ss_pred EEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+|++++|+++. |..+. ++|++|++++|.++.+|..+..+++|++|++++|. +..+|...+. .+++|++|+++++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFD-RLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTT-TCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHh-cCCCCCEEEecCC
Confidence 99999999876 44443 79999999999999999999999999999999987 8899988555 7999999999987
Q ss_pred C
Q 005834 673 R 673 (675)
Q Consensus 673 ~ 673 (675)
+
T Consensus 508 ~ 508 (562)
T 3a79_B 508 P 508 (562)
T ss_dssp C
T ss_pred C
Confidence 5
No 76
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=9.8e-12 Score=115.57 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=109.4
Q ss_pred cCCCeEEecCCCCCccCCCCcCCC-ccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcccc-ccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCP-RLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSL-GRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~L~~L~~L 596 (675)
..+++.+.+.+|.+..++....+. +|+.|++++|..... ..+..+++|++|++++|.++.+|..+ +.+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 567899999999999887766665 999999987765443 23788999999999999999888665 899999999
Q ss_pred EeccccCCC-cc--cccCCCCCcEEEeeCCCCCccchh----hcCCCCCCEecCcCcc
Q 005834 597 CLEYCRLKD-IV--IVGQLKKLEILSFRGSDIERLPLE----FGQLTRLQLLDLSNCR 647 (675)
Q Consensus 597 ~l~~~~l~~-~~--~i~~l~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~~ 647 (675)
++++|.+.. +. .++.+++|++|++++|.+..+|.. ++.+++|+.|+++.|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999988 44 789999999999999999999985 9999999999999986
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=3.9e-11 Score=114.78 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=110.2
Q ss_pred cCCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 595 (675)
...++.+.+.++.+..++.. ..+++|+.|++..+... .++...|..+++|++|++++|.++.+|.. +..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 45789999999999887763 47999999999766543 45566688999999999999999988655 689999999
Q ss_pred EEeccccCCC-cc-cccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccC
Q 005834 596 LCLEYCRLKD-IV-IVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRL 649 (675)
Q Consensus 596 L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l 649 (675)
|++++|.+.. +. .+..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 9999999988 43 478999999999999999998875 788999999999998633
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.27 E-value=3.5e-11 Score=127.21 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcC------------------------------
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDG------------------------------ 566 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------------------------ 566 (675)
..+++.+.+.+|.+..++. ...+++|+.|.+..+.....+ ...+.+
T Consensus 140 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCee
Confidence 3467777777777766543 236777777777655422211 000111
Q ss_pred -------CCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhhcCCCC
Q 005834 567 -------TEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEFGQLTR 637 (675)
Q Consensus 567 -------l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~ 637 (675)
.++|+.|++++|.++.. ..++.+++|++|++++|.+.. |..++.+++|++|++++|.++.+|..+..+++
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 296 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTT
T ss_pred eeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCC
Confidence 12334444444444433 235556666666666666655 45666666666666666666666666666666
Q ss_pred CCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 638 LQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 638 L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|++|++++|. +..+|..+.. +++|++|++++|+
T Consensus 297 L~~L~L~~n~-l~~~~~~~~~--l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 297 LKVLDLSHNH-LLHVERNQPQ--FDRLENLYLDHNS 329 (390)
T ss_dssp CCEEECCSSC-CCCCGGGHHH--HTTCSEEECCSSC
T ss_pred CCEEECCCCc-ceecCccccc--cCcCCEEECCCCc
Confidence 6666666664 5566655443 6666666666553
No 79
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.27 E-value=3e-11 Score=116.69 Aligned_cols=127 Identities=23% Similarity=0.324 Sum_probs=110.2
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 595 (675)
+..++.|.+.+|.+..++. ...+++|+.|++..|... .+.+..|.++++|++|+|++|.++.+|.. +..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 4679999999999988764 347899999999776543 33345588999999999999999998766 588999999
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcc
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCR 647 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 647 (675)
|+|++|++.. +..+..+++|++|+|++|.++.+|.. +..+++|++|++++|+
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 9999999988 56899999999999999999998874 8899999999999987
No 80
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.26 E-value=2.5e-11 Score=136.29 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=122.6
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~ 601 (675)
+.+..+++.++.+|... .++++.|+++++... ..+...|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLK--ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCC-CCCcCEEECCCCCcC--EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 45667777888888744 388999999776543 34445588999999999999999976 667999999999999999
Q ss_pred cCCC--cccccCCCCCcEEEeeCCCCCccc-hhhcCCCCCCEecCcCcccCc--ccchhhhhccCCccCEEeCcCCC
Q 005834 602 RLKD--IVIVGQLKKLEILSFRGSDIERLP-LEFGQLTRLQLLDLSNCRRLE--VITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 602 ~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.+.. |..++++++|++|++++|.+..+| ..++++++|++|++++|. +. .+|..+. ++++|++|++++|.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~--~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFS--NLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGG--TCTTCCEEECCSSC
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHh--hcCCCCEEEccCCc
Confidence 9887 678999999999999999999887 579999999999999987 54 4677665 59999999999874
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=3.1e-11 Score=135.02 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=82.1
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcC------------------------------
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDG------------------------------ 566 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------------------------ 566 (675)
..+++.|.+.+|.+..++. ...+++|+.|++.+|.....+ ...+.+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence 3466777777777766543 336777777777655422211 000000
Q ss_pred -------CCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhhcCCCC
Q 005834 567 -------TEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEFGQLTR 637 (675)
Q Consensus 567 -------l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~ 637 (675)
.++|+.|++++|.++.. ..++.+++|++|+|++|.+.. |..++.+++|++|+|++|.+..+|..+..+++
T Consensus 224 ~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 302 (597)
T 3oja_B 224 NVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302 (597)
T ss_dssp CEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTT
T ss_pred cccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCC
Confidence 01233333333333332 345556666666666666655 44566666666666666666666666666666
Q ss_pred CCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 638 LQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 638 L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|+.|++++|. +..+|..+.. +++|++|++++|+
T Consensus 303 L~~L~Ls~N~-l~~i~~~~~~--l~~L~~L~L~~N~ 335 (597)
T 3oja_B 303 LKVLDLSHNH-LLHVERNQPQ--FDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECCSSC-CCCCGGGHHH--HTTCSEEECCSSC
T ss_pred CcEEECCCCC-CCccCccccc--CCCCCEEECCCCC
Confidence 6666666665 5556655543 6666666666553
No 82
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=2.8e-11 Score=116.81 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=109.5
Q ss_pred cCCCeEEecCCCCCccCCC---CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPE---RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~ 594 (675)
+..++.+.+.+|.+..++. ...+++|+.|++..+... .++...|.++++|++|++++|.++.+|. .+..+++|+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 4567899999999988743 348999999999766543 3445568899999999999999998755 489999999
Q ss_pred EEEeccccCCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcc
Q 005834 595 TLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 595 ~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~ 647 (675)
+|+|++|++.. +..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|+
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999988 56899999999999999999988 6789999999999999987
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=7.6e-12 Score=127.84 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=119.3
Q ss_pred cCCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcc-cccc-hhhhcCCCCccEEEecCCCCCCCccc----cccc
Q 005834 519 QEGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGS-MPIS-DHFFDGTEGLRVLNFTGIHFSSLPSS----LGRL 590 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~----i~~L 590 (675)
..+++.+.+.+|.+..++.. ..+++|++|+++.|.... ...+ ...+..+++|++|++++|.++.+|.. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 56789999999999776643 378999999997775321 1111 12246789999999999999876653 5788
Q ss_pred cCCCEEEeccccCCC--cccccCC---CCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccC
Q 005834 591 INLQTLCLEYCRLKD--IVIVGQL---KKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665 (675)
Q Consensus 591 ~~L~~L~l~~~~l~~--~~~i~~l---~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~ 665 (675)
++|++|+|++|.+.. |+.++.+ ++|++|++++|.++.+|..+. ++|++|++++|. +..+|. .. .+++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~--~~-~l~~L~ 297 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ--PD-ELPEVD 297 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCC--TT-SCCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCch--hh-hCCCcc
Confidence 999999999999887 6677776 699999999999999998775 799999999987 777775 34 699999
Q ss_pred EEeCcCCC
Q 005834 666 VFGMAASR 673 (675)
Q Consensus 666 ~L~l~~c~ 673 (675)
+|++++++
T Consensus 298 ~L~L~~N~ 305 (310)
T 4glp_A 298 NLTLDGNP 305 (310)
T ss_dssp CEECSSTT
T ss_pred EEECcCCC
Confidence 99999875
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.26 E-value=3.8e-11 Score=130.15 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEecc
Q 005834 521 GPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEY 600 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~ 600 (675)
.++.+.+..+.+..++....+++|+.|+++++..... +. +.++++|++|++++|.+..+|. ++.+++|++|++++
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~--~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCc--hh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 4455555555554444444455555555543332111 11 3444444555554444444433 44444444444444
Q ss_pred ccCCCcccccCCCCCcEEEeeCCCCC
Q 005834 601 CRLKDIVIVGQLKKLEILSFRGSDIE 626 (675)
Q Consensus 601 ~~l~~~~~i~~l~~L~~L~l~~~~i~ 626 (675)
|.+...+.++++++|++|++++|.+.
T Consensus 122 n~l~~~~~~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 122 NQITDIDPLKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEEEEEEEEC
T ss_pred CCCCCChHHcCCCCCCEEECCCCccC
Confidence 44444222444444444444444333
No 85
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.25 E-value=2.2e-11 Score=103.09 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred hHhhhHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhhhhhhhh
Q 005834 17 GAKSLFKPIIRQISYVFKYQSYVDELKDQVMQLGCKREMVQQPVNHARLQG-DELYEGVADWLHSVDEFISEGVANSIID 95 (675)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~v~~~~~~~~~ed~ld 95 (675)
++++|.+.+.+++. .+.+++++++.|+++|..|+++|.+|+.+. ...++.++.|+++||+++|| +|||||
T Consensus 6 ll~KL~~ll~~E~~-------l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD--~ED~iD 76 (115)
T 3qfl_A 6 LIPKLGELLTEEFK-------LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV--IEDVVD 76 (115)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH--HHHHHH
Confidence 33444454455543 377899999999999999999999999873 24689999999999999999 999999
Q ss_pred hhhhh
Q 005834 96 DENGA 100 (675)
Q Consensus 96 ~~~~~ 100 (675)
+|.+.
T Consensus 77 ~f~~~ 81 (115)
T 3qfl_A 77 KFLVQ 81 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.25 E-value=1.8e-11 Score=125.18 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=92.9
Q ss_pred CCCeEEecCCCCCc-cCCCCc-CCC-ccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCccccccccCCCE
Q 005834 520 EGPIAISLPYRGIQ-VLPERL-QCP-RLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGRLINLQT 595 (675)
Q Consensus 520 ~~~~~lsl~~~~~~-~~~~~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~ 595 (675)
.+++.+.+.+|.+. .+|... .++ +|+.|.+..+.... ..+..+..++ |++|++++|.++ ..|..++.+++|++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~--~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE--ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec--cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 45666666666665 344332 444 66666665443211 1122244454 777777777666 34666677777777
Q ss_pred EEeccccCCC-cccccCCCCCcEEEeeCCCCC-ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 596 LCLEYCRLKD-IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 596 L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|++++|.+.. ++.+..+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|.. . .+++|+.|++++++
T Consensus 226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~-~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--G-NLQRFDVSAYANNK 302 (313)
T ss_dssp EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--T-TGGGSCGGGTCSSS
T ss_pred EECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--c-cccccChHHhcCCC
Confidence 7777777665 555677777777777777776 66777777777777777777644456653 3 47777777777665
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.25 E-value=2.8e-11 Score=136.32 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=91.5
Q ss_pred CCeEEecCCCCCccCCCCc--CCCccceeEeccccCcccccchhhhcCCC-------CccEEEecCCCCCCCccccc--c
Q 005834 521 GPIAISLPYRGIQVLPERL--QCPRLELLLLLEKGGGSMPISDHFFDGTE-------GLRVLNFTGIHFSSLPSSLG--R 589 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-------~L~~L~l~~~~~~~lp~~i~--~ 589 (675)
.++.+.+.+|.+..+|... .+++|+.|.+..|... .++...+.... +|+.|++++|.++.+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 5666666666666655532 3666777777555433 33333333222 67777777777777776665 6
Q ss_pred ccCCCEEEeccccCCC-cccccCCCCCcEEEeeC------CC-CCccchhhcCCCCCCEecCcCcccCcccchhhhhccC
Q 005834 590 LINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRG------SD-IERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSW 661 (675)
Q Consensus 590 L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~------~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L 661 (675)
+++|++|+|++|++.. |..++++++|++|++++ |. ...+|..+..+++|+.|++++|. ++.+|..+ .
T Consensus 512 l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~----~ 586 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI----T 586 (636)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC----C
T ss_pred CCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhH----h
Confidence 7777777777777666 56667777777777743 33 33566677777777777777766 46666542 3
Q ss_pred CccCEEeCcCCC
Q 005834 662 LHLEVFGMAASR 673 (675)
Q Consensus 662 ~~L~~L~l~~c~ 673 (675)
++|++|++++|+
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 567777777664
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.24 E-value=2.5e-11 Score=135.75 Aligned_cols=147 Identities=22% Similarity=0.168 Sum_probs=118.4
Q ss_pred cCCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 595 (675)
...++.+.+.++.+..+|.. ..+++|+.|++.++... .++...|..+++|++|+|++|.++.+|+ .++.+++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 56788899998888888764 36899999999766533 3444458889999999999999987754 5689999999
Q ss_pred EEeccccCCC-ccc-ccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 596 LCLEYCRLKD-IVI-VGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 596 L~l~~~~l~~-~~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|+|++|.+.. |+. ++++++|++|+|++|.+..+|. .++.+++|++|++++|. +..+|.. .+++|++|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLS----LIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGG----GCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChh----hhhhhhhhhcccC
Confidence 9999999888 544 5899999999999999987765 68999999999999987 6667642 4777877777765
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.24 E-value=3.3e-11 Score=131.10 Aligned_cols=149 Identities=18% Similarity=0.152 Sum_probs=75.6
Q ss_pred CCCeEEecCCCCCccCC-C-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEE
Q 005834 520 EGPIAISLPYRGIQVLP-E-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTL 596 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L 596 (675)
..++.|.+.+|.+..+. . ...+++|+.|++..+... .++...|.++++|++|++++|.+..+ |..+..+++|++|
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 34555666655554432 1 225556666666443322 23333455555666666666655533 4445555566666
Q ss_pred EeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 597 CLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 597 ~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++++|.+.. +..++.+++|++|++++|.++.+|. .+..+++|+.|++++|. +..++...+. .+++|++|++++|
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~-~l~~L~~L~l~~~ 210 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFK-RLYRLKVLEISHW 210 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSC-SCTTCCEEEEECC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcc-cCcccceeeCCCC
Confidence 666555554 3355555555555555555555543 25555555555555544 3334333333 3445555544443
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=3e-11 Score=113.93 Aligned_cols=125 Identities=21% Similarity=0.295 Sum_probs=99.1
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~ 601 (675)
+.+.++++.+..+|... .++|+.|.+..+.....+. ..++..+++|++|++++|.++.+ |..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 56788888888888644 3489999997665433221 23477889999999999999876 778899999999999999
Q ss_pred cCCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccC
Q 005834 602 RLKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRL 649 (675)
Q Consensus 602 ~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l 649 (675)
+++. +..+..+++|++|+|++|.++.+ |..+..+++|++|++++|...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9887 44588899999999999998866 667888999999999998743
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.23 E-value=1.8e-11 Score=125.11 Aligned_cols=148 Identities=17% Similarity=0.127 Sum_probs=118.7
Q ss_pred CCCeEEecCCCCCccCCC--CcCCCccceeEeccccCc-ccccchh-hhcCCCCccEEEecCCCCCCCcc---c-ccccc
Q 005834 520 EGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGG-SMPISDH-FFDGTEGLRVLNFTGIHFSSLPS---S-LGRLI 591 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~-~~~~~~~-~~~~l~~L~~L~l~~~~~~~lp~---~-i~~L~ 591 (675)
.+++.+.+.+|.+..++. ...+++|+.|+++.|... ..+.+.. .+..+++|+.|++++|.++.+|. . +..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 688999999999987763 347999999999776522 1222222 23789999999999999985442 2 35779
Q ss_pred CCCEEEeccccCCC-c--ccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEe
Q 005834 592 NLQTLCLEYCRLKD-I--VIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFG 668 (675)
Q Consensus 592 ~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~ 668 (675)
+|++|++++|.+.. + ..+..+++|++|++++|.++.+|..+. ++|++|++++|. +..+|. +. .+++|++|+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~--~~-~l~~L~~L~ 302 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPS--PD-ELPQVGNLS 302 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCC--TT-TSCEEEEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChh--Hh-hCCCCCEEe
Confidence 99999999999887 3 456678999999999999999998877 899999999987 788876 44 699999999
Q ss_pred CcCCC
Q 005834 669 MAASR 673 (675)
Q Consensus 669 l~~c~ 673 (675)
+++++
T Consensus 303 L~~N~ 307 (312)
T 1wwl_A 303 LKGNP 307 (312)
T ss_dssp CTTCT
T ss_pred ccCCC
Confidence 99875
No 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.23 E-value=6.3e-11 Score=127.64 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=57.8
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEec
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLE 599 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 599 (675)
..++.+.++++.+..+|....+++|+.|++..+..... + +..+++|++|++++|.++.+| ++.+++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~--~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--D---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC--C---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE--c---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 34555555555555554444555555555544432221 1 344555555555555555443 4555555555555
Q ss_pred cccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCc
Q 005834 600 YCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNC 646 (675)
Q Consensus 600 ~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 646 (675)
+|+++..+ ++.+++|++|++++|.++.+| ++.+++|+.|++++|
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTC
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCC
Confidence 55554432 455555555555555554443 444444444444444
No 93
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=6.6e-11 Score=136.19 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=70.2
Q ss_pred cchhhhcCCCCccEEEecCCCCCCCccccccc--------cCCCEEEeccccCCC-ccccc--CCCCCcEEEeeCCCCCc
Q 005834 559 ISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRL--------INLQTLCLEYCRLKD-IVIVG--QLKKLEILSFRGSDIER 627 (675)
Q Consensus 559 ~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L--------~~L~~L~l~~~~l~~-~~~i~--~l~~L~~L~l~~~~i~~ 627 (675)
++..++..+++|+.|++++|.+..+|..+... ++|++|+|++|++.. |..+. .+++|+.|+|++|.+..
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc
Confidence 44455556666777777776666666554332 267777777776666 55555 66777777777776666
Q ss_pred cchhhcCCCCCCEecCcC------cccCcccchhhhhccCCccCEEeCcCCC
Q 005834 628 LPLEFGQLTRLQLLDLSN------CRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 628 lp~~i~~L~~L~~L~l~~------~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|..+..+++|+.|++++ |.....+|..+. ++++|++|++++|.
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~--~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT--TCPSLIQLQIGSND 817 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHh--cCCCCCEEECCCCC
Confidence 766666777777776655 333444555544 36667777666653
No 94
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=9.3e-11 Score=120.86 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=116.5
Q ss_pred CCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEE
Q 005834 520 EGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLC 597 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~ 597 (675)
..++.+.+.+|.+..++. ...+++|+.|.+..+...........+.++++|++|++++|.++.+|..+. ++|++|+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELH 198 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEE
Confidence 456677777776665544 236777888887665544333444557788888888888888888877654 7889999
Q ss_pred eccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 598 LEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 598 l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|.+.. +..++.+++|++|++++|.+..+|. .+..+++|+.|++++|. +..+|..+. .+++|++|++++|+
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~--~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLA--DHKYIQVVYLHNNN 274 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTT--TCSSCCEEECCSSC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhc--cCCCcCEEECCCCc
Confidence 99998876 5688999999999999999998765 68899999999999986 788998765 59999999999874
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.23 E-value=4.6e-11 Score=134.69 Aligned_cols=143 Identities=25% Similarity=0.285 Sum_probs=110.2
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 595 (675)
+..++.|.+++|.++.++. +..+++|+.|+++.|.. ..++++.|.++++|++|+|++|+++.+|. .++.|++|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 5678899999998888764 34788999999976643 34555668889999999999999888764 4788999999
Q ss_pred EEeccccCCC-c-ccccCCCCCcEEEeeCCCCCc--cchhhcCCCCCCEecCcCcccCcccchhhhhccCCccC
Q 005834 596 LCLEYCRLKD-I-VIVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665 (675)
Q Consensus 596 L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~ 665 (675)
|++++|+++. + ..++++++|++|++++|.++. +|..++.+++|++|++++|. +..++...+. .+.+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~-~L~~l~ 200 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR-VLHQMP 200 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH-HHHTCT
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc-chhhhh
Confidence 9999998887 3 358889999999999988874 57778889999999999886 6666554433 344443
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.23 E-value=6.7e-11 Score=133.22 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=110.5
Q ss_pred CCeEEecCCCCCccC-CC-Cc-------CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccc-
Q 005834 521 GPIAISLPYRGIQVL-PE-RL-------QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRL- 590 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~-~~-~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L- 590 (675)
.++.+.+.+|.+... |. .. .+++|+.|++..+... .++..++..+++|+.|++++|.++.+|..+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 466677776666442 11 11 4567777877655443 456666777888999999988888777654432
Q ss_pred -------cCCCEEEeccccCCC-ccccc--CCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcC------cccCcccch
Q 005834 591 -------INLQTLCLEYCRLKD-IVIVG--QLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSN------CRRLEVITP 654 (675)
Q Consensus 591 -------~~L~~L~l~~~~l~~-~~~i~--~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~------~~~l~~lp~ 654 (675)
++|++|++++|.++. |..+. .+++|++|+|++|.++.+|..+..+++|+.|++++ |.....+|.
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 288999999998887 66776 88999999999998888888888899999999854 444566777
Q ss_pred hhhhccCCccCEEeCcCCC
Q 005834 655 NVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 655 ~~~~~~L~~L~~L~l~~c~ 673 (675)
.+. .+++|++|++++|.
T Consensus 561 ~l~--~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 561 GIT--LCPSLTQLQIGSND 577 (636)
T ss_dssp TGG--GCSSCCEEECCSSC
T ss_pred HHh--cCCCCCEEECCCCc
Confidence 765 48999999998874
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.23 E-value=3.8e-11 Score=135.35 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=113.8
Q ss_pred CCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCEEEeccccCCC-
Q 005834 528 PYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKD- 605 (675)
Q Consensus 528 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~- 605 (675)
.+..++.+|... -++++.|+++.|... .++...|.++++|++|+|++|.++.+|+ .+.+|++|++|+|++|+++.
T Consensus 39 ~~~~l~~vP~~l-p~~~~~LdLs~N~i~--~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDNL-PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCCCC-CcCCCEEEeeCCCCC--CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 344566666532 247999999777543 4455668999999999999999998854 68999999999999999988
Q ss_pred c-ccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcc--cchhhhhccCCccCEEeCcCCC
Q 005834 606 I-VIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEV--ITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 606 ~-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
| ..++++.+|++|++++|+++.+|. .+++|++|++|++++|. +.. +|..+ . .+++|++|+++++.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~-~-~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYF-S-NLTNLEHLDLSSNK 184 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGG-G-GCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhh-c-cchhhhhhcccCcc
Confidence 4 468999999999999999999987 48999999999999987 544 34444 4 69999999999874
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=1.5e-11 Score=141.64 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=92.6
Q ss_pred cCCCeEEecCCCCCcc------------------CCCCc---CCCccceeEeccccCcccccchhhhcCCCCccEEEecC
Q 005834 519 QEGPIAISLPYRGIQV------------------LPERL---QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTG 577 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 577 (675)
..+++.|.+++|.+.. +|... .+++|+.|.+..|... ..+| ..+.++++|+.|++++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP-~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLP-DFLYDLPELQSLNIAC 524 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCC-GGGGGCSSCCEEECTT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccCh-HHHhCCCCCCEEECcC
Confidence 3567777777777766 66554 5777777777654321 1222 3356667777777777
Q ss_pred CC-CCC--Ccccccccc-------CCCEEEeccccCCC-cc--cccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCc
Q 005834 578 IH-FSS--LPSSLGRLI-------NLQTLCLEYCRLKD-IV--IVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLS 644 (675)
Q Consensus 578 ~~-~~~--lp~~i~~L~-------~L~~L~l~~~~l~~-~~--~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 644 (675)
|. ++. +|..++.++ +|++|++++|.+.. |. .++++++|++|+|++|.+..+| .++.+++|++|+++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECc
Confidence 65 553 566665555 66777776666665 44 5666666666666666666666 66666666666666
Q ss_pred CcccCcccchhhhhccCCc-cCEEeCcCC
Q 005834 645 NCRRLEVITPNVICQSWLH-LEVFGMAAS 672 (675)
Q Consensus 645 ~~~~l~~lp~~~~~~~L~~-L~~L~l~~c 672 (675)
+|. +..+|..+. ++++ |++|++++|
T Consensus 604 ~N~-l~~lp~~l~--~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 604 YNQ-IEEIPEDFC--AFTDQVEGLGFSHN 629 (876)
T ss_dssp SSC-CSCCCTTSC--EECTTCCEEECCSS
T ss_pred CCc-cccchHHHh--hccccCCEEECcCC
Confidence 665 446665543 3665 666666655
No 99
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.22 E-value=1.8e-10 Score=111.14 Aligned_cols=191 Identities=11% Similarity=0.092 Sum_probs=119.2
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDL 235 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (675)
.....++||++.++.+.+++.....+.+.|+|.+|+|||++|+.+++.......-...+.+..+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34557889999999999999876666699999999999999999998764321112244455444444333322222211
Q ss_pred CCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccchhHH-hhhc
Q 005834 236 GIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDLL-RNVM 312 (675)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va-~~~~ 312 (675)
.... ...+++.+||+||++... .++.+...+.. ...+.++|+||+..... ....
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-------~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM-------YSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCHHHH
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh-------cCCCCeEEEEeCChhhcCHHHH
Confidence 1100 112468999999997652 12222111111 34567888888764321 2122
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHH
Q 005834 313 NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKAL 370 (675)
Q Consensus 313 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 370 (675)
.....+.+.+++.++..+++.+.+..... .--.+..+.|++.++|.|..+..+...+
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33458999999999999999987642111 1224577889999999998655544433
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.22 E-value=9.8e-11 Score=126.86 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=101.1
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+.+|.+..++....+++|+.|.+..+..... +. +..+++|+.|++++|.++.+|. ++.+++|++|++
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI--SP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTL 316 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEEC
T ss_pred CCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc--cc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEEC
Confidence 345667777777666655555677777777755543222 11 5667778888888877777654 777788888888
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.+.....++.+++|++|++++|.+..+| .+..+++|+.|++++|. +..+++ +. .+++|++|++++|+
T Consensus 317 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~-~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 317 YFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTP--LA-NLTRITQLGLNDQA 386 (466)
T ss_dssp CSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCBCGG--GT-TCTTCCEEECCCEE
T ss_pred cCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc-cCccch--hh-cCCCCCEEeccCCc
Confidence 8887777444777888888888888777774 57788888888888876 444444 33 58888888887763
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=4.1e-11 Score=132.24 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=92.6
Q ss_pred hcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCcccccCCCCCcEEEeeCCCCCcc--chhhcCCCCCCEe
Q 005834 564 FDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERL--PLEFGQLTRLQLL 641 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~l--p~~i~~L~~L~~L 641 (675)
+.++++|+.|++++|.++.+|..++.|++|++|+|++|.++.++.++++++|++|+|++|.++.+ |..++.|++|+.|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 67788999999999999999999999999999999999999955999999999999999999988 8899999999999
Q ss_pred cCcCcccCcccchh---hhhccCCccCEEeC
Q 005834 642 DLSNCRRLEVITPN---VICQSWLHLEVFGM 669 (675)
Q Consensus 642 ~l~~~~~l~~lp~~---~~~~~L~~L~~L~l 669 (675)
++++|. +..+|+. +.. .+++|+.|++
T Consensus 539 ~L~~N~-l~~~~~~~~~l~~-~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNS-LCQEEGIQERLAE-MLPSVSSILT 567 (567)
T ss_dssp ECTTSG-GGGSSSCTTHHHH-HCTTCSEEEC
T ss_pred EecCCc-CCCCccHHHHHHH-HCcccCccCC
Confidence 999987 6666543 333 5899999975
No 102
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.22 E-value=6.3e-11 Score=132.99 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=119.8
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~ 595 (675)
+..++++.+++|.+..++. ...+++|++|+++.+... .+.+..|.++++|++|++++|.++.+ |..++.+++|++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 5678999999999987643 348899999999766533 34445578899999999999998865 778899999999
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCCccc-hhhcCCCCCCEecCcCcccCcccchhhhhccCCccC--EEeCc
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLP-LEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE--VFGMA 670 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~--~L~l~ 670 (675)
|++++|.++. +..++++++|++|++++|.+..++ +.+..+++|++|++++|. +..++...+. .+++|+ +|+++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMS-SLQQATNLSLNLN 187 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHH-TTTTCCSEEEECT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhh-hhcccceeEEecC
Confidence 9999999887 568889999999999999888763 344558999999999886 6666655555 688888 78877
Q ss_pred CCC
Q 005834 671 ASR 673 (675)
Q Consensus 671 ~c~ 673 (675)
+|.
T Consensus 188 ~n~ 190 (606)
T 3t6q_A 188 GND 190 (606)
T ss_dssp TCC
T ss_pred CCc
Confidence 764
No 103
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=8.4e-11 Score=109.30 Aligned_cols=124 Identities=22% Similarity=0.279 Sum_probs=96.2
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~ 601 (675)
+.+.+..+.+..+|.. -.++|+.|.+.++... .++...+..+++|++|++++|.++.+|.. ++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567777777777743 3478899998765533 44555678888999999999988877654 688899999999999
Q ss_pred cCCC-cc-cccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcccC
Q 005834 602 RLKD-IV-IVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCRRL 649 (675)
Q Consensus 602 ~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l 649 (675)
.++. +. .++.+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 8887 33 468889999999999988888876 477889999999988733
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.20 E-value=6.4e-11 Score=134.87 Aligned_cols=151 Identities=18% Similarity=0.135 Sum_probs=121.2
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCcc-ccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~ 595 (675)
+.+++++.+++|.+..++. ...+++|++|++..+... ..++..+.++++|++|++++|.++.+|. .++.+++|++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 4689999999999888775 347899999999765432 3445568889999999999999998876 5899999999
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhh-ccCCccCEEeCcC
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVIC-QSWLHLEVFGMAA 671 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~-~~L~~L~~L~l~~ 671 (675)
|++++|.+.. +..++++++|++|++++|.+... |..++++++|++|++++|. +..++...+. ..+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCC
Confidence 9999999887 35789999999999999988865 4568889999999999986 6666654332 0358899999887
Q ss_pred C
Q 005834 672 S 672 (675)
Q Consensus 672 c 672 (675)
|
T Consensus 181 n 181 (680)
T 1ziw_A 181 N 181 (680)
T ss_dssp C
T ss_pred C
Confidence 6
No 105
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.20 E-value=7e-11 Score=136.21 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=123.8
Q ss_pred cCCCeEEecCCCCCc-cCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQ-VLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~L~~L~~ 595 (675)
...++.+.+.+|.+. .+|.. ..+++|+.|++..+... ...+..+.++++|+.|++++|.+. .+|..++.+++|++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 346888888888876 34443 37889999999765432 122344788999999999999988 67889999999999
Q ss_pred EEeccccCCC--cccccCCCCCcEEEeeCCCCC-ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 596 LCLEYCRLKD--IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 596 L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
|++++|++.. |..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..+. .+++|++|++++|
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTN 548 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG--GCTTCCEEECCSS
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCCCEEECCCC
Confidence 9999999885 778999999999999999988 7899999999999999999985567887765 4999999999887
Q ss_pred C
Q 005834 673 R 673 (675)
Q Consensus 673 ~ 673 (675)
+
T Consensus 549 ~ 549 (768)
T 3rgz_A 549 L 549 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 106
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.20 E-value=1.2e-10 Score=125.87 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccccCCC--cccccCCCCCcE
Q 005834 541 CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEI 617 (675)
Q Consensus 541 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~ 617 (675)
+++|+.|++..+... ..+...+..+++|++|++++|.+..+ |..++.+++|++|++++|.+.. +..++.+++|++
T Consensus 274 ~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 274 ASGVKTCDLSKSKIF--ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp TSCCCEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred ccCceEEEecCcccc--ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 468888888665433 23344578888999999999988865 6678889999999999998877 567888999999
Q ss_pred EEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 618 LSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 618 L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|++++|.+..+ |..+..+++|++|++++|. +..+|...+. .+++|++|++++++
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFD-RLTSLQKIWLHTNP 406 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred EECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhc-cCCcccEEEccCCC
Confidence 99999988877 6678889999999999886 7778877766 78999999998764
No 107
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.19 E-value=5.5e-11 Score=138.55 Aligned_cols=151 Identities=25% Similarity=0.329 Sum_probs=117.6
Q ss_pred cCCCeEEecCCCCCccCC--CCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLP--ERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~ 595 (675)
+..++.|.+++|.+..++ ....+++|+.|++..+.. ...+++..|.++++|++|+|++|.+..+ |..++.+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 678999999999997754 345899999999976632 2344455689999999999999999865 888999999999
Q ss_pred EEeccccCCC--ccc--ccCCCCCcEEEeeCCCCCccc--hhhcCCCCCCEecCcCcccCcccchhhhhccC--CccCEE
Q 005834 596 LCLEYCRLKD--IVI--VGQLKKLEILSFRGSDIERLP--LEFGQLTRLQLLDLSNCRRLEVITPNVICQSW--LHLEVF 667 (675)
Q Consensus 596 L~l~~~~l~~--~~~--i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L--~~L~~L 667 (675)
|+|++|.+.. |.. ++++++|++|+|++|.+..++ ..+++|++|++|++++|..-...|..+. .+ ++|++|
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~--~l~~~~L~~L 179 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE--PLQGKTLSFF 179 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH--HHHHCSSCCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc--cccCCccceE
Confidence 9999999886 554 899999999999999998763 5799999999999999873333343332 23 455555
Q ss_pred eCcCC
Q 005834 668 GMAAS 672 (675)
Q Consensus 668 ~l~~c 672 (675)
++++|
T Consensus 180 ~L~~n 184 (844)
T 3j0a_A 180 SLAAN 184 (844)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 54443
No 108
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.19 E-value=8e-11 Score=135.70 Aligned_cols=81 Identities=25% Similarity=0.293 Sum_probs=59.2
Q ss_pred ccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCC-ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCE
Q 005834 590 LINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEV 666 (675)
Q Consensus 590 L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~ 666 (675)
+++|++|++++|+++. |..++++++|++|+|++|.++ .+|..++.|++|+.|++++|.-.+.+|..+. .+++|++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~ 708 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS--ALTMLTE 708 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG--GCCCCSE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh--CCCCCCE
Confidence 4567777777777665 667777778888888887776 6777788888888888887774456666554 4778888
Q ss_pred EeCcCC
Q 005834 667 FGMAAS 672 (675)
Q Consensus 667 L~l~~c 672 (675)
|++++|
T Consensus 709 L~ls~N 714 (768)
T 3rgz_A 709 IDLSNN 714 (768)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 887766
No 109
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.19 E-value=3.5e-11 Score=133.38 Aligned_cols=151 Identities=21% Similarity=0.275 Sum_probs=124.3
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~ 595 (675)
...++.+.+++|.+..++. ...+++|++|++.++... ..++..|.++++|++|++++|.++.+|.. ++.+++|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4679999999999987643 458999999999776543 34445688999999999999999987655 999999999
Q ss_pred EEeccccCCC---cccccCCCCCcEEEeeCCC-CCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCc
Q 005834 596 LCLEYCRLKD---IVIVGQLKKLEILSFRGSD-IERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMA 670 (675)
Q Consensus 596 L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~ 670 (675)
|++++|.+.. +..++++++|++|++++|. +..+|. .+..+++|++|++++|......|..+. .+++|++|+++
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~ 180 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK--SIRDIHHLTLH 180 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh--ccccCceEecc
Confidence 9999999874 5689999999999999997 778874 799999999999999884444565554 59999999998
Q ss_pred CCC
Q 005834 671 ASR 673 (675)
Q Consensus 671 ~c~ 673 (675)
++.
T Consensus 181 ~n~ 183 (549)
T 2z81_A 181 LSE 183 (549)
T ss_dssp CSB
T ss_pred cCc
Confidence 764
No 110
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.19 E-value=4.6e-11 Score=122.12 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=118.2
Q ss_pred cCCCeEEecCCCCCc-cCCCC---cCCCccceeEeccccCcccccchhhhcCC-----CCccEEEecCCCCCCCc-cccc
Q 005834 519 QEGPIAISLPYRGIQ-VLPER---LQCPRLELLLLLEKGGGSMPISDHFFDGT-----EGLRVLNFTGIHFSSLP-SSLG 588 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~ 588 (675)
..+++.+.+.+|.+. ..|.. ..+++|+.|+++.+..... + ..+..+ ++|++|++++|.+..+| ..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 567999999999887 45553 5789999999987764433 2 234444 89999999999999775 7899
Q ss_pred cccCCCEEEeccccCCC----cccc--cCCCCCcEEEeeCCCCCccch---h-hcCCCCCCEecCcCcccCcccc-hhhh
Q 005834 589 RLINLQTLCLEYCRLKD----IVIV--GQLKKLEILSFRGSDIERLPL---E-FGQLTRLQLLDLSNCRRLEVIT-PNVI 657 (675)
Q Consensus 589 ~L~~L~~L~l~~~~l~~----~~~i--~~l~~L~~L~l~~~~i~~lp~---~-i~~L~~L~~L~l~~~~~l~~lp-~~~~ 657 (675)
.+++|++|++++|++.. +..+ +.+++|++|++++|.++.+|. . +..+++|++|++++|. +...+ ...+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhh
Confidence 99999999999999654 3445 899999999999999985543 3 4678999999999997 55543 3334
Q ss_pred hccCCccCEEeCcCCC
Q 005834 658 CQSWLHLEVFGMAASR 673 (675)
Q Consensus 658 ~~~L~~L~~L~l~~c~ 673 (675)
. .+++|++|++++|.
T Consensus 250 ~-~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 250 D-WPSQLNSLNLSFTG 264 (312)
T ss_dssp C-CCTTCCEEECTTSC
T ss_pred h-hcCCCCEEECCCCc
Confidence 4 58999999999874
No 111
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.19 E-value=1.1e-10 Score=132.77 Aligned_cols=107 Identities=21% Similarity=0.408 Sum_probs=51.9
Q ss_pred hcCCCCccEEEecCCCCCCCcc-ccccccCCCEEEeccccCCCc----------ccccCCCCCcEEEeeCCCCCccchh-
Q 005834 564 FDGTEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKDI----------VIVGQLKKLEILSFRGSDIERLPLE- 631 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~~----------~~i~~l~~L~~L~l~~~~i~~lp~~- 631 (675)
+.++++|++|++++|.++.+|. .++.+++|++|++++|.+... ..++.+++|++|++++|.++.+|..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 4455555555555555554432 245555555555555554321 1144455555555555555555442
Q ss_pred hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 632 FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 632 i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+..+++|+.|++++|. +..+|...+. .+++|++|++++|
T Consensus 556 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~-~l~~L~~L~L~~N 594 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNN-LNTLPASVFN-NQVSLKSLNLQKN 594 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECTTS
T ss_pred cccccCcceeECCCCC-CCcCCHhHhC-CCCCCCEEECCCC
Confidence 4455555555555443 4445444443 4455555555443
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=4.1e-11 Score=130.29 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=107.9
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCccccc--------------chhhhcCCCCccEEEecCCCCCCC-c
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPI--------------SDHFFDGTEGLRVLNFTGIHFSSL-P 584 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~l-p 584 (675)
..++.|.+++|.+...+....+++|+.|++++|.....+. .......+++|+.|++++|.++.+ |
T Consensus 58 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 137 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD 137 (487)
T ss_dssp TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG
T ss_pred CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc
Confidence 3455666666655543334455555555554432111110 000023467889999999998876 6
Q ss_pred cccccccCCCEEEeccccCCC--ccccc-CCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccC
Q 005834 585 SSLGRLINLQTLCLEYCRLKD--IVIVG-QLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSW 661 (675)
Q Consensus 585 ~~i~~L~~L~~L~l~~~~l~~--~~~i~-~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L 661 (675)
..++.+++|++|+|++|.+.. |..+. .+++|++|+|++|.++.+|. ...+++|++|++++|. +..+|+.+. .+
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~--~l 213 (487)
T 3oja_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQ--SA 213 (487)
T ss_dssp BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGG--GG
T ss_pred hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHhHc--CC
Confidence 678899999999999999887 55665 79999999999999998875 4469999999999987 888888755 59
Q ss_pred CccCEEeCcCCC
Q 005834 662 LHLEVFGMAASR 673 (675)
Q Consensus 662 ~~L~~L~l~~c~ 673 (675)
++|++|++++|.
T Consensus 214 ~~L~~L~Ls~N~ 225 (487)
T 3oja_A 214 AGVTWISLRNNK 225 (487)
T ss_dssp TTCSEEECTTSC
T ss_pred CCccEEEecCCc
Confidence 999999999874
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=8.5e-12 Score=142.14 Aligned_cols=108 Identities=29% Similarity=0.321 Sum_probs=89.6
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccccCCCCCcEE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQLKKLEIL 618 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L 618 (675)
.+++|+.|++..+... .++..++ ++++|++|+|++|.++.+|..++.|++|++|+|++|.++. |..+++|.+|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~--~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF--NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCS--CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCC--CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 6788888888666543 3444444 7888999999999998889889999999999999998887 7788999999999
Q ss_pred EeeCCCCCccchhhcCCCCCCEecCcCcccCcc
Q 005834 619 SFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEV 651 (675)
Q Consensus 619 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~ 651 (675)
+|++|.++.+|..|+.|++|++|+|++|. +..
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCS
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCc-cCC
Confidence 99999888999889999999999999887 443
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=1.1e-10 Score=128.12 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=100.2
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
..+++.|.+++|.++.+|. . ..+|+.|+++.|.... ++. .+++|++|++++|.++.+|. .+++|++|+|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l-~~~L~~L~Ls~N~l~~--lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-L-PASLKHLDVDNNQLTM--LPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSV 167 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-C-CTTCCEEECCSSCCSC--CCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cCCCCEEEccCCCCCCcch-h-hcCCCEEECCCCcCCC--CCC----cCccccEEeCCCCccCcCCC---cCCCcCEEEC
Confidence 4567777777777777666 2 2277888876655433 332 56788888888888888776 5678888888
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCC-------CEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRL-------QLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L-------~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
++|+++.++.++ ++|++|+|++|.++.+|. +.. +| +.|++++|. +..+|..++. +++|++|++++
T Consensus 168 s~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~--l~~L~~L~L~~ 239 (571)
T 3cvr_A 168 RNNQLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILS--LDPTCTIILED 239 (571)
T ss_dssp CSSCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGG--SCTTEEEECCS
T ss_pred CCCCCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhc--CCCCCEEEeeC
Confidence 888888733355 889999999888888887 554 67 889999886 7788887775 89999999988
Q ss_pred CC
Q 005834 672 SR 673 (675)
Q Consensus 672 c~ 673 (675)
|+
T Consensus 240 N~ 241 (571)
T 3cvr_A 240 NP 241 (571)
T ss_dssp SS
T ss_pred Cc
Confidence 75
No 115
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.18 E-value=4.3e-11 Score=133.25 Aligned_cols=152 Identities=18% Similarity=0.268 Sum_probs=124.0
Q ss_pred cCCCeEEecCCCCCccCCC-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-CccccccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPE-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSSLGRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~L~~L~~L 596 (675)
...++.+.+.+|.+..++. ...+++|+.|.+.++..... .+...+.++++|++|++++|.+.. .|..++.+++|++|
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC-TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCccccc-cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 4567888888887766544 34788899999966543222 122347889999999999999885 57788999999999
Q ss_pred EeccccCCC---cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 597 CLEYCRLKD---IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 597 ~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++++|.+.. |..++.+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+. ++++|++|++++|
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~N 528 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFD-RLTSLQKIWLHTN 528 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSS
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhh-cccCCcEEEecCC
Confidence 999999862 77899999999999999999977 7789999999999999986 7778877666 7999999999986
Q ss_pred C
Q 005834 673 R 673 (675)
Q Consensus 673 ~ 673 (675)
+
T Consensus 529 ~ 529 (570)
T 2z63_A 529 P 529 (570)
T ss_dssp C
T ss_pred c
Confidence 5
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.4e-10 Score=109.37 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=101.4
Q ss_pred ceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeC
Q 005834 545 ELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRG 622 (675)
Q Consensus 545 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~ 622 (675)
+.+++..+... .+|..+ .+.|+.|++++|.++.+|..+..+++|++|+|++|.++. +..+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~--~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK--VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS--SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC--cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666444332 334332 357999999999999999999999999999999999988 45789999999999999
Q ss_pred CCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 623 SDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 623 ~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|.++.+|. .+..+++|++|++++|. +..+|...+. .+++|++|++++++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFN-DLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTT-TCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhh-cCccccEEEeCCCC
Confidence 99998876 58999999999999987 8889887776 79999999998764
No 117
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.1e-10 Score=120.34 Aligned_cols=149 Identities=16% Similarity=0.220 Sum_probs=112.1
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC---Cccccccc-----
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS---LPSSLGRL----- 590 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~i~~L----- 590 (675)
...++.+.+.+|.+..+|.... ++|+.|.+..+... .++...+.++++|+.|++++|.++. .|..+..+
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L 177 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIR--KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYL 177 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCC--CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCC
T ss_pred cCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccC--ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEE
Confidence 4567888888888887776544 78888888665543 4455568889999999999988752 34444443
Q ss_pred ---------------cCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCccc
Q 005834 591 ---------------INLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVI 652 (675)
Q Consensus 591 ---------------~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l 652 (675)
++|++|++++|.+.. +..+..+++|++|++++|.+..+|. .+..+++|+.|++++|. +..+
T Consensus 178 ~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 256 (332)
T 2ft3_A 178 RISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRV 256 (332)
T ss_dssp BCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBC
T ss_pred ECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-Ceec
Confidence 356666666666665 3578888899999999998887765 68889999999999886 7788
Q ss_pred chhhhhccCCccCEEeCcCCC
Q 005834 653 TPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 653 p~~~~~~~L~~L~~L~l~~c~ 673 (675)
|..+. .+++|++|++++++
T Consensus 257 p~~l~--~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 257 PAGLP--DLKLLQVVYLHTNN 275 (332)
T ss_dssp CTTGG--GCTTCCEEECCSSC
T ss_pred Chhhh--cCccCCEEECCCCC
Confidence 88765 49999999998764
No 118
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=8.4e-11 Score=108.85 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=78.9
Q ss_pred ceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccccCCC-cc-cccCCCCCcEEEee
Q 005834 545 ELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCRLKD-IV-IVGQLKKLEILSFR 621 (675)
Q Consensus 545 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~l~ 621 (675)
+.+++.++... .+|..+ .+.|++|++++|.++.+ |..++.+++|++|+|++|+++. |. .+.++++|++|+|+
T Consensus 15 ~~l~~~~n~l~--~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA--SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS--SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC--ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 56666544433 333332 37788999999998877 5678889999999999998888 44 35788999999999
Q ss_pred CCCCCccchh-hcCCCCCCEecCcCcccCcccch
Q 005834 622 GSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITP 654 (675)
Q Consensus 622 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 654 (675)
+|.++.+|.. +..+++|++|++++|. +...|.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 9999888875 8888999999999887 554443
No 119
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.17 E-value=9.1e-11 Score=129.05 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=104.3
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~ 601 (675)
+.+.++++.++.+|.... ++|+.|+++.+... ..+...+.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc--ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 467777788877776544 78888888665432 34445578888888888888888866 677888888888888888
Q ss_pred cCCCcccccCCCCCcEEEeeCCCCCc--cchhhcCCCCCCEecCcCcccCcccchhhhhccCCcc--CEEeCcCCC
Q 005834 602 RLKDIVIVGQLKKLEILSFRGSDIER--LPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHL--EVFGMAASR 673 (675)
Q Consensus 602 ~l~~~~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L--~~L~l~~c~ 673 (675)
+++.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..+. .+++| ++|++++|.
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~-~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVL-PIAHLNISKVLLVLGE 149 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGG-GGTTSCEEEEEEEECT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhcc-ccccceeeEEEeeccc
Confidence 88773333 78888888888888875 56788888888888888876 433 1233 46677 888887763
No 120
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.17 E-value=8.9e-12 Score=127.74 Aligned_cols=150 Identities=14% Similarity=0.066 Sum_probs=122.1
Q ss_pred cCCCeEEecCCCCCccCCC--CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEE
Q 005834 519 QEGPIAISLPYRGIQVLPE--RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTL 596 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L 596 (675)
...++.+.+.+|.+..++. ...+++|+.|++..+...... +..++..++.|++|++++|.++.+|. ...+++|++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCccccc-ccccccCCEE
Confidence 4568999999999987654 336899999999776544322 33445678999999999999998864 4469999999
Q ss_pred EeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccC-cccchhhhhccCCccCEEeCcCC
Q 005834 597 CLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRL-EVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 597 ~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l-~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++++|.++. ++.+..+++|++|++++|.++.+|..+..+++|+.|++++|... ..+|..+ . .+++|+.|++++|
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~-~-~~~~L~~l~l~~~ 272 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-S-KNQRVQTVAKQTV 272 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH-H-TCHHHHHHHHHHH
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH-h-ccccceEEECCCc
Confidence 999999998 77899999999999999999999999999999999999999844 3455444 4 5888888887643
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=9.6e-11 Score=108.06 Aligned_cols=100 Identities=22% Similarity=0.259 Sum_probs=75.4
Q ss_pred ccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccccCCC-cc-cccCCCCCcEEE
Q 005834 543 RLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCRLKD-IV-IVGQLKKLEILS 619 (675)
Q Consensus 543 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~ 619 (675)
..+.|++.++.... +|..+ .+.|++|+|++|.++.+ |..++.+++|++|+|++|+++. ++ .+..+++|++|+
T Consensus 10 ~~~~l~~s~n~l~~--ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLAS--VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCSS--CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcCc--cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 35677775554332 33322 36788888888888877 5668888888888888888887 33 467888888888
Q ss_pred eeCCCCCccchh-hcCCCCCCEecCcCcc
Q 005834 620 FRGSDIERLPLE-FGQLTRLQLLDLSNCR 647 (675)
Q Consensus 620 l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 647 (675)
|++|.++.+|.. +..+++|++|++++|+
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 888888888774 7888888888888876
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.16 E-value=1.3e-10 Score=109.51 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=62.7
Q ss_pred CccEEEecCCCCCCCccc--cccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecC
Q 005834 569 GLRVLNFTGIHFSSLPSS--LGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDL 643 (675)
Q Consensus 569 ~L~~L~l~~~~~~~lp~~--i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 643 (675)
.|++|++++|.++.+|.. ++.+++|++|+|++|.++. |..++.+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666666655442 5666666666666666665 34566666666666666666655543 566666666666
Q ss_pred cCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 644 SNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 644 ~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|. +..+++..+. .+++|++|++++++
T Consensus 110 ~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFE-HLNSLTSLNLASNP 137 (192)
T ss_dssp CSSC-CCEECTTSST-TCTTCCEEECTTCC
T ss_pred CCCc-CCeeCHHHhh-cCCCCCEEEeCCCC
Confidence 6665 4444333333 46666666666543
No 123
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=1.1e-10 Score=136.05 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=117.5
Q ss_pred EEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCC-CCC-ccccccccCCCEEEeccc
Q 005834 524 AISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHF-SSL-PSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 524 ~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-p~~i~~L~~L~~L~l~~~ 601 (675)
....+.+.++.+|. -.++|+.|+++.|.... .....|.++++|++|++++|.. ..+ |..+++|++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 34455677888887 66899999998776433 3334588999999999999954 455 778999999999999999
Q ss_pred cCCC--cccccCCCCCcEEEeeCCCCCc-cchh--hcCCCCCCEecCcCcccCccc-chhhhhccCCccCEEeCcCCC
Q 005834 602 RLKD--IVIVGQLKKLEILSFRGSDIER-LPLE--FGQLTRLQLLDLSNCRRLEVI-TPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 602 ~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~~~~~L~~L~~L~l~~c~ 673 (675)
.+.. |..++++++|++|+|++|.+.. +|.. +++|++|++|++++|. +..+ |...++ ++++|++|++++|.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~-~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFG-KLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGG-TCSSCCEEEEESSC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHh-hCCCCCEEECCCCc
Confidence 9887 7799999999999999999885 5665 9999999999999998 4444 434455 79999999999874
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.14 E-value=2.8e-10 Score=126.59 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=61.8
Q ss_pred cCCCEEEeccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCc
Q 005834 591 INLQTLCLEYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMA 670 (675)
Q Consensus 591 ~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~ 670 (675)
++|++|++++|.++.++ ..+++|++|++++|.++.+|. .+++|+.|++++|. +..+|..+. ++++|+.|+++
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~--~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLI--HLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGGGG--GSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHHHh--hccccCEEEec
Confidence 66778888888777733 556889999999999988886 67889999999986 778998765 59999999999
Q ss_pred CCC
Q 005834 671 ASR 673 (675)
Q Consensus 671 ~c~ 673 (675)
+|+
T Consensus 293 ~N~ 295 (622)
T 3g06_A 293 GNP 295 (622)
T ss_dssp SCC
T ss_pred CCC
Confidence 885
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.1e-10 Score=105.41 Aligned_cols=123 Identities=20% Similarity=0.279 Sum_probs=96.3
Q ss_pred cceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEEeccccCCC-c-ccccCCCCCcEEEe
Q 005834 544 LELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYCRLKD-I-VIVGQLKKLEILSF 620 (675)
Q Consensus 544 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l 620 (675)
.+.+.+..+... .+|.. -.+.|+.|++++|.++.+|.. ++.+++|++|++++|.++. + ..++.+++|++|++
T Consensus 9 ~~~l~~~~~~l~--~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT--SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS--SCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc--cCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 456666444322 33322 236899999999999877654 6889999999999999887 3 34688999999999
Q ss_pred eCCCCCccchh-hcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 621 RGSDIERLPLE-FGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 621 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
++|.++.+|.. +..+++|++|++++|. +..+|..++. .+++|++|++++++
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~-~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFD-RLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhc-CCcccCEEEecCCC
Confidence 99999988875 6889999999999986 7788887766 78999999998875
No 126
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.14 E-value=1.9e-10 Score=127.73 Aligned_cols=143 Identities=24% Similarity=0.287 Sum_probs=112.5
Q ss_pred CeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEecc
Q 005834 522 PIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEY 600 (675)
Q Consensus 522 ~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~ 600 (675)
.+.+.++++.++.+|... .++|+.|+++.+... ..+...|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 378888888888888644 388999999766543 34445688999999999999999876 67789999999999999
Q ss_pred ccCCCcccccCCCCCcEEEeeCCCCCccc--hhhcCCCCCCEecCcCcccCcccchhhhhccCCcc--CEEeCcCCC
Q 005834 601 CRLKDIVIVGQLKKLEILSFRGSDIERLP--LEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHL--EVFGMAASR 673 (675)
Q Consensus 601 ~~l~~~~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L--~~L~l~~c~ 673 (675)
|+++.++.. .+++|++|++++|.+..+| ..++++++|++|++++|. +...+ +. .+++| ++|++++|.
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~-~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LL-PVAHLHLSCILLDLVS 180 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TG-GGTTSCEEEEEEEESS
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hh-hhhhceeeEEEeeccc
Confidence 998883333 8999999999999998764 689999999999999976 44332 22 35555 999988764
No 127
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=118.71 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=57.4
Q ss_pred CCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC---Cc--cccccccCCCEEEeccccCCCcc-----ccc
Q 005834 541 CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS---LP--SSLGRLINLQTLCLEYCRLKDIV-----IVG 610 (675)
Q Consensus 541 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp--~~i~~L~~L~~L~l~~~~l~~~~-----~i~ 610 (675)
+++|+.|.+..+.. ...+...+.++++|++|++++|.+.. +| ..++.+++|++|++++|+++.++ .++
T Consensus 144 ~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 44455555533332 12222234445555555555554431 21 11234455555555555554311 124
Q ss_pred CCCCCcEEEeeCCCCCcc-chhhcCC---CCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 611 QLKKLEILSFRGSDIERL-PLEFGQL---TRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 611 ~l~~L~~L~l~~~~i~~l-p~~i~~L---~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
.+++|++|+|++|.+..+ |..+..+ ++|++|++++|. +..+|..+ .++|++|++++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~----~~~L~~L~Ls~N 282 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL----PAKLRVLDLSSN 282 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC----CSCCSCEECCSC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh----cCCCCEEECCCC
Confidence 455555555555555544 4444444 355555555554 44555432 245555555544
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.7e-10 Score=127.27 Aligned_cols=100 Identities=26% Similarity=0.338 Sum_probs=92.1
Q ss_pred CccEEEecCCCCCCCccccccccCCCEEEeccccCCC-cccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcc
Q 005834 569 GLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD-IVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 569 ~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~ 647 (675)
.|++|++++|.++.+|. ++.|++|++|+|++|.++. |..++.+++|++|+|++|.++.+| .++.|++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 48999999999999997 9999999999999999988 889999999999999999999999 89999999999999987
Q ss_pred cCccc--chhhhhccCCccCEEeCcCCC
Q 005834 648 RLEVI--TPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 648 ~l~~l--p~~~~~~~L~~L~~L~l~~c~ 673 (675)
+..+ |..+. .+++|++|++++++
T Consensus 520 -l~~~~~p~~l~--~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 520 -LQQSAAIQPLV--SCPRLVLLNLQGNS 544 (567)
T ss_dssp -CCSSSTTGGGG--GCTTCCEEECTTSG
T ss_pred -CCCCCCcHHHh--cCCCCCEEEecCCc
Confidence 7777 66655 59999999999874
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=5.4e-12 Score=119.79 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=113.2
Q ss_pred CeEEecCCC--CCccCCC-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 522 PIAISLPYR--GIQVLPE-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 522 ~~~lsl~~~--~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
++...+.+. .+..+|. ...+++|+.|++..+.... ++ .+.++++|++|++++|.++.+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 444444432 3444443 3378999999997765443 33 477899999999999999999988888999999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccch--hhcCCCCCCEecCcCcccCcccch---------hhhhccCCccCEE
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPL--EFGQLTRLQLLDLSNCRRLEVITP---------NVICQSWLHLEVF 667 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~---------~~~~~~L~~L~~L 667 (675)
++|+++.++.++.+++|++|++++|.+..+|. .+..+++|++|++++|......|. .++. .+++|++|
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L 179 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK-RLPNLKKL 179 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH-HCSSCSEE
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH-hCCCcEEE
Confidence 99999996689999999999999999998875 789999999999999873232232 2344 69999999
Q ss_pred eCcC
Q 005834 668 GMAA 671 (675)
Q Consensus 668 ~l~~ 671 (675)
+-..
T Consensus 180 d~~~ 183 (198)
T 1ds9_A 180 DGMP 183 (198)
T ss_dssp CCGG
T ss_pred CCcc
Confidence 8443
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.10 E-value=6.7e-11 Score=122.24 Aligned_cols=152 Identities=22% Similarity=0.238 Sum_probs=113.6
Q ss_pred cCCCeEEecCCCCCcc--CCC-CcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCC-CCC--CCccccccccC
Q 005834 519 QEGPIAISLPYRGIQV--LPE-RLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGI-HFS--SLPSSLGRLIN 592 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~lp~~i~~L~~ 592 (675)
..+++.+.+.+|.+.. ++. ...+++|+.|.+.++... ......+.++++|++|++++| .++ .+|..+..+++
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 4678888888887643 332 236889999999665422 122234677899999999998 676 36777888999
Q ss_pred CCEEEeccc-cCCC---cccccCCC-CCcEEEeeCCC--C--CccchhhcCCCCCCEecCcCcccCc-ccchhhhhccCC
Q 005834 593 LQTLCLEYC-RLKD---IVIVGQLK-KLEILSFRGSD--I--ERLPLEFGQLTRLQLLDLSNCRRLE-VITPNVICQSWL 662 (675)
Q Consensus 593 L~~L~l~~~-~l~~---~~~i~~l~-~L~~L~l~~~~--i--~~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~~~~~L~ 662 (675)
|++|++++| .++. +..+..++ +|++|++++|. + ..+|..+..+++|++|++++|..+. ..+..+. +++
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~ 247 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF--QLN 247 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG--GCT
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh--CCC
Confidence 999999999 7875 45678888 99999999984 4 4678888889999999999987444 3444444 589
Q ss_pred ccCEEeCcCCCC
Q 005834 663 HLEVFGMAASRR 674 (675)
Q Consensus 663 ~L~~L~l~~c~~ 674 (675)
+|++|++++|..
T Consensus 248 ~L~~L~l~~~~~ 259 (336)
T 2ast_B 248 YLQHLSLSRCYD 259 (336)
T ss_dssp TCCEEECTTCTT
T ss_pred CCCEeeCCCCCC
Confidence 999999999864
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=5.7e-12 Score=119.66 Aligned_cols=102 Identities=20% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEecc
Q 005834 521 GPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEY 600 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~ 600 (675)
.++.+.+++|.+..+|....+++|+.|++..|... .++ ..+..+++|++|++++|.++.+| .++.+++|++|++++
T Consensus 49 ~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~-~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 49 ACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIE-NLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp TCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCS-SHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred CCCEEECCCCCCccccccccCCCCCEEECCCCCcc--ccc-chhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence 44445554444444443334445555555433322 111 12333344555555555554444 344455555555555
Q ss_pred ccCCC-c--ccccCCCCCcEEEeeCCCCC
Q 005834 601 CRLKD-I--VIVGQLKKLEILSFRGSDIE 626 (675)
Q Consensus 601 ~~l~~-~--~~i~~l~~L~~L~l~~~~i~ 626 (675)
|.+.. + ..+..+++|++|++++|.+.
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 55444 1 23444555555555555443
No 132
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.09 E-value=6.5e-10 Score=119.72 Aligned_cols=138 Identities=12% Similarity=0.075 Sum_probs=76.0
Q ss_pred CCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEecc
Q 005834 521 GPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEY 600 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~ 600 (675)
.++.+.+.+|.+..++ ...+++|+.|++..+..... + +..+++|++|++++|.++.+| ++.+++|++|++++
T Consensus 86 ~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 86 NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHL 157 (457)
T ss_dssp TCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTT
T ss_pred CCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCC
Confidence 3444444444444443 33444555555543332221 1 344555555555555555443 44555555555555
Q ss_pred ccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 601 CRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 601 ~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
|.....-.++.+++|++|++++|.++.+| +..+++|+.|++++|. +..++ +. .+++|++|++++|.
T Consensus 158 n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~---l~-~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 158 NKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD---LN-QNIQLTFLDCSSNK 223 (457)
T ss_dssp CSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC---CT-TCTTCSEEECCSSC
T ss_pred CCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeec---cc-cCCCCCEEECcCCc
Confidence 53222114566677777777777777776 6677777777777765 55554 23 47778888777663
No 133
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=6.7e-10 Score=124.60 Aligned_cols=151 Identities=21% Similarity=0.192 Sum_probs=100.1
Q ss_pred CCCeEEecCCCCCccCCCCc-CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-CCcc-ccccccCCCEE
Q 005834 520 EGPIAISLPYRGIQVLPERL-QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-SLPS-SLGRLINLQTL 596 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~L~~L~~L 596 (675)
..++.+.+.+|.+..+|... .+++|+.|.+..+... ..++..+..+++|+.|++++|.+. .+|. .++.+++|++|
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE--NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCS--BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcC--cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 45677777777777666543 5677777777555432 222334666777777777777765 4443 36777777777
Q ss_pred EeccccCCC----cccccCCCCCcEEEeeCCCCCcc-chhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 597 CLEYCRLKD----IVIVGQLKKLEILSFRGSDIERL-PLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 597 ~l~~~~l~~----~~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
++++|.+.. +..++.+++|++|++++|.+..+ |..+..+++|++|++++|......|...+. .+++|++|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT-TCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh-CcccCCEEECCC
Confidence 777777665 23577778888888887777655 456777788888888877633333444344 578888888877
Q ss_pred CC
Q 005834 672 SR 673 (675)
Q Consensus 672 c~ 673 (675)
|.
T Consensus 435 n~ 436 (606)
T 3t6q_A 435 SL 436 (606)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.09 E-value=4.4e-11 Score=123.61 Aligned_cols=153 Identities=20% Similarity=0.126 Sum_probs=116.4
Q ss_pred cCCCeEEecCCCCCcc-CC-CCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCC-CCCC--Ccccccccc-C
Q 005834 519 QEGPIAISLPYRGIQV-LP-ERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGI-HFSS--LPSSLGRLI-N 592 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~L~-~ 592 (675)
..+++.+.+.+|.+.. .+ ....+++|+.|.+.++..-........+.++++|+.|++++| .++. +|..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 4688999999887752 22 223689999999976632211122345778999999999999 8874 677789999 9
Q ss_pred CCEEEeccc--cCCC---cccccCCCCCcEEEeeCCC-CC-ccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccC
Q 005834 593 LQTLCLEYC--RLKD---IVIVGQLKKLEILSFRGSD-IE-RLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLE 665 (675)
Q Consensus 593 L~~L~l~~~--~l~~---~~~i~~l~~L~~L~l~~~~-i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~ 665 (675)
|++|++++| .++. +..+..+++|++|++++|. ++ ..|..+.++++|++|++++|..+.......+. ++++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCC
Confidence 999999999 4553 5677889999999999998 55 66778999999999999998633222111244 699999
Q ss_pred EEeCcCC
Q 005834 666 VFGMAAS 672 (675)
Q Consensus 666 ~L~l~~c 672 (675)
+|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 9999988
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.05 E-value=7.7e-10 Score=121.54 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=107.8
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
...++.+.+++|.+..+| ..+++|+.|++++|.... ++. +.+ +|++|++++|.++.+|. .+++|++|++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence 356899999999999888 568999999997775443 333 333 89999999999999887 6899999999
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCcc-------CEEeCcC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHL-------EVFGMAA 671 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L-------~~L~l~~ 671 (675)
++|.++.++. .+++|++|+|++|.++.+|. +. ++|++|++++|. +..+|. +. . +| ++|++++
T Consensus 148 s~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~-~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 148 DNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VP-V--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC-----------CCEEEECCS
T ss_pred CCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HH-H--hhhcccccceEEecCC
Confidence 9999988433 67899999999999999998 66 899999999986 788887 32 2 56 9999988
Q ss_pred CC
Q 005834 672 SR 673 (675)
Q Consensus 672 c~ 673 (675)
|.
T Consensus 217 N~ 218 (571)
T 3cvr_A 217 NR 218 (571)
T ss_dssp SC
T ss_pred Cc
Confidence 74
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=1.5e-09 Score=111.38 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=117.4
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
+.....++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++...........+++..+.......+ .+++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3445678999999999999998766666999999999999999999988642211112444444443332222 222221
Q ss_pred hCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccchh-HHhhh
Q 005834 235 LGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD-LLRNV 311 (675)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-va~~~ 311 (675)
+..... .+..+++.++|+||++... .++.+...+.. ...++.+|+||+... +....
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-------~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMEL-------YSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-------TTTTEEEEEEESCGGGSCHHH
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhc-------cCCCceEEEEeCChhhchhHH
Confidence 110000 0102358899999997642 22222211111 345677787776533 21222
Q ss_pred cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH-HHHHHHH
Q 005834 312 MNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA-LITLAKA 369 (675)
Q Consensus 312 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~~~ 369 (675)
......+++.+++.++..+++...+.... ..--.+..+.|++.++|.|.. +..+...
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLED-VKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34456899999999999999988764211 112245778999999999954 4444443
No 137
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=2e-09 Score=115.69 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEec
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLE 599 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 599 (675)
..++.+.+.+|.+..+|....+++|+.|++.++.... ++. ...+|++|++++|.++.+| .++.+++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp~----~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LPD----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CCC----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cCC----CcccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 4566667766666666655566677777775544322 111 1235666666666666655 46666666666666
Q ss_pred cccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccc
Q 005834 600 YCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVIT 653 (675)
Q Consensus 600 ~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp 653 (675)
+|.+...+.+ ..+|++|++++|.+..+| .++.+++|++|++++|. +..+|
T Consensus 204 ~N~l~~l~~~--~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~ 253 (454)
T 1jl5_A 204 NNSLKKLPDL--PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLP 253 (454)
T ss_dssp SSCCSSCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCC
T ss_pred CCcCCcCCCC--cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCccc
Confidence 6665542211 135556666666555555 35556666666666554 44444
No 138
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.02 E-value=1.9e-09 Score=116.03 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=104.0
Q ss_pred CCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEec
Q 005834 520 EGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLE 599 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 599 (675)
..++.+.+.+|.+..++.. .++|+.|++..+.... ++ . +.++++|++|++++|.++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~--lp-~-~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK--LP-E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS--CC-C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCC--Cc-c-cCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 4677777777777665542 2678888886665433 33 2 778888888888888888777643 478888888
Q ss_pred cccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCCC
Q 005834 600 YCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 600 ~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|.++.++.++++++|++|++++|.++.+|... .+|++|++++|. +..+|. +. .+++|++|++++|.
T Consensus 182 ~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~-~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQ-NLPFLTTIYADNNL 248 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CT-TCTTCCEEECCSSC
T ss_pred CCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cC-CCCCCCEEECCCCc
Confidence 888888557888999999999998888887543 578999999886 678884 44 69999999998763
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.01 E-value=6.2e-10 Score=115.67 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=104.5
Q ss_pred cCCCeEEecCCCCCccCCCC--cCCCccceeEeccccCcccccchhhhcCCCCccE-EEecCCCCCCC-ccccccccCCC
Q 005834 519 QEGPIAISLPYRGIQVLPER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRV-LNFTGIHFSSL-PSSLGRLINLQ 594 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~l-p~~i~~L~~L~ 594 (675)
+..++.|.+++|.++.++.. ..+++|+.|+++.|... ..++...|.+++.+.. +.+.+|+++.+ |..+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 46788999999999888763 47899999999766431 1233344666666553 45556666665 44566777777
Q ss_pred EEEeccccCCC-c--------------------------ccccCC-CCCcEEEeeCCCCCccchhhcCCCCCCEecCcCc
Q 005834 595 TLCLEYCRLKD-I--------------------------VIVGQL-KKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNC 646 (675)
Q Consensus 595 ~L~l~~~~l~~-~--------------------------~~i~~l-~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 646 (675)
+|++++|++.. + ..+..+ ..|++|++++|.++++|..+....+|+.|++.+|
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 77777666543 1 112222 3577788888888888877777777888888776
Q ss_pred ccCcccchhhhhccCCccCEEeCcCC
Q 005834 647 RRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 647 ~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
..++.+|.+++. .+++|++|+++++
T Consensus 188 n~l~~i~~~~f~-~l~~L~~LdLs~N 212 (350)
T 4ay9_X 188 NNLEELPNDVFH-GASGPVILDISRT 212 (350)
T ss_dssp TTCCCCCTTTTT-TEECCSEEECTTS
T ss_pred CcccCCCHHHhc-cCcccchhhcCCC
Confidence 668888877766 7888888888776
No 140
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.01 E-value=2.4e-09 Score=119.12 Aligned_cols=132 Identities=19% Similarity=0.150 Sum_probs=89.7
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEe
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCL 598 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l 598 (675)
+.+++.|.+.+|.++.+|. .+++|++|++++|.... ++. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 3567888888888877776 57788888886665332 322 56788888888888887776 5677888888
Q ss_pred ccccCCCcccccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 599 EYCRLKDIVIVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 599 ~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
++|+++.++. .+++|++|++++|.++.+|.. +.+|+.|++++|. +..+|. .+++|++|++++|
T Consensus 129 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~~-----~~~~L~~L~Ls~N 191 (622)
T 3g06_A 129 FGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPM-----LPSGLQELSVSDN 191 (622)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS
T ss_pred CCCCCCcCCC--CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC-CCCCcc-----cCCCCcEEECCCC
Confidence 8888777322 247788888888888777753 3456666666654 555551 3566666666655
No 141
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.01 E-value=1.4e-10 Score=122.33 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=110.2
Q ss_pred cCCCeEEecCCCCCccC-----CCC-cCC---------CccceeEeccccCcccccc--hhhhcCCCCccEEEecCCCCC
Q 005834 519 QEGPIAISLPYRGIQVL-----PER-LQC---------PRLELLLLLEKGGGSMPIS--DHFFDGTEGLRVLNFTGIHFS 581 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~-----~~~-~~~---------~~L~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~ 581 (675)
..++++|.+.+|.+... +.. ..+ ++|++|.+..|.......+ ...+..+++|+.|++++|.+.
T Consensus 121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 45678888888877421 111 122 7888888876654322222 134667888999999998887
Q ss_pred ------CCccccccccCCCEEEeccccCC-----C-cccccCCCCCcEEEeeCCCCCc-----cchhh--cCCCCCCEec
Q 005834 582 ------SLPSSLGRLINLQTLCLEYCRLK-----D-IVIVGQLKKLEILSFRGSDIER-----LPLEF--GQLTRLQLLD 642 (675)
Q Consensus 582 ------~lp~~i~~L~~L~~L~l~~~~l~-----~-~~~i~~l~~L~~L~l~~~~i~~-----lp~~i--~~L~~L~~L~ 642 (675)
..|..+..+++|++|+|++|.+. . +..+..+++|++|+|++|.+.. +|..+ +++++|++|+
T Consensus 201 ~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280 (386)
T ss_dssp HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence 23447788889999999999884 2 5677888899999999988874 46666 4488899999
Q ss_pred CcCcccCcc-----cchhhhhccCCccCEEeCcCCC
Q 005834 643 LSNCRRLEV-----ITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 643 l~~~~~l~~-----lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+++|. +.. +|..+.. ++++|++|++++|+
T Consensus 281 L~~n~-i~~~g~~~l~~~l~~-~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 281 LQYNE-IELDAVRTLKTVIDE-KMPDLLFLELNGNR 314 (386)
T ss_dssp CCSSC-CBHHHHHHHHHHHHH-HCTTCCEEECTTSB
T ss_pred CcCCc-CCHHHHHHHHHHHHh-cCCCceEEEccCCc
Confidence 99887 555 7777655 68899999998875
No 142
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.94 E-value=6.6e-10 Score=117.15 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=112.2
Q ss_pred cCCCeEEecCCCCCcc-----CCCC-cCCCccceeEeccccCcccc--cchhhhcCC---------CCccEEEecCCCCC
Q 005834 519 QEGPIAISLPYRGIQV-----LPER-LQCPRLELLLLLEKGGGSMP--ISDHFFDGT---------EGLRVLNFTGIHFS 581 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l---------~~L~~L~l~~~~~~ 581 (675)
...++.+.+++|.+.. ++.. ..+++|++|++..|...... .....+..+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 4678889998888765 2322 36789999999766542111 111223333 88999999999886
Q ss_pred --CCc---cccccccCCCEEEeccccCCC------cc-cccCCCCCcEEEeeCCCC-----CccchhhcCCCCCCEecCc
Q 005834 582 --SLP---SSLGRLINLQTLCLEYCRLKD------IV-IVGQLKKLEILSFRGSDI-----ERLPLEFGQLTRLQLLDLS 644 (675)
Q Consensus 582 --~lp---~~i~~L~~L~~L~l~~~~l~~------~~-~i~~l~~L~~L~l~~~~i-----~~lp~~i~~L~~L~~L~l~ 644 (675)
.+| ..+..+++|++|++++|.+.. .+ .+..+++|++|+|++|.+ ..+|..+..+++|++|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 344 467788899999999998872 23 788899999999999988 5788889999999999999
Q ss_pred CcccCccc-----chhhhhccCCccCEEeCcCCC
Q 005834 645 NCRRLEVI-----TPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 645 ~~~~l~~l-----p~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|. +... |..+...++++|++|++++|.
T Consensus 253 ~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 253 DCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 987 4433 433310138899999999885
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=4.9e-09 Score=96.87 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=77.8
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~ 601 (675)
+.+.+.++.+..+|... .++|+.|++..|... .+++..|.++++|++|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45667777777777644 377888888665433 33345577888888888888888877665 477888888888888
Q ss_pred cCCC-cc-cccCCCCCcEEEeeCCCCCccchhhc
Q 005834 602 RLKD-IV-IVGQLKKLEILSFRGSDIERLPLEFG 633 (675)
Q Consensus 602 ~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp~~i~ 633 (675)
+++. ++ .+..+++|++|+|++|.+.-.|..+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 8877 43 37788888888888887776665433
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=7.7e-09 Score=95.17 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=76.0
Q ss_pred eEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccc-cccccCCCEEEeccc
Q 005834 523 IAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSS-LGRLINLQTLCLEYC 601 (675)
Q Consensus 523 ~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~ 601 (675)
+.+.++++.+..+|... .++|+.|++..|... .++...|.++++|++|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46777778888777644 478888888665433 33345577888888888888888877655 578888888888888
Q ss_pred cCCC-cc-cccCCCCCcEEEeeCCCCCc
Q 005834 602 RLKD-IV-IVGQLKKLEILSFRGSDIER 627 (675)
Q Consensus 602 ~l~~-~~-~i~~l~~L~~L~l~~~~i~~ 627 (675)
+++. ++ .+..+++|++|+|++|.+.-
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8877 33 57888888888888886653
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=9.8e-09 Score=105.38 Aligned_cols=191 Identities=12% Similarity=0.093 Sum_probs=115.4
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
+.....++|+++.++.+.+++..+..+.+.++|++|+||||+|+.+++.......-...+.+..+.......+ .+.+
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 97 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKV-- 97 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHH--
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHH--
Confidence 3345568899999999999988776667999999999999999999988542210012333333321111110 0000
Q ss_pred hCCCcccCcCHHHHHHHHHHH--HhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccchhH-Hh
Q 005834 235 LGIKFELNESIFDRANRLCRV--LKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL-LR 309 (675)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-a~ 309 (675)
...... +..+++.++|+||++... .++.+...+.. ...++++|+||..... ..
T Consensus 98 ---------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 98 ---------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-------FSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp ---------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCH
T ss_pred ---------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-------cCCCCeEEEEeCCccccCH
Confidence 000000 111467899999997642 22222211111 3456788888765432 11
Q ss_pred hhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 310 NVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 310 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
........+.+.+++.++...++...+..... .--.+..+.|++.++|.|..+..+...+.
T Consensus 156 ~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 156 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 11223458899999999999999887653211 12245778999999999986655544443
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=7.9e-09 Score=107.12 Aligned_cols=89 Identities=24% Similarity=0.176 Sum_probs=68.9
Q ss_pred cccchhhhcCCCCccEEEecC-CCCCCCc-cccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccchhh
Q 005834 557 MPISDHFFDGTEGLRVLNFTG-IHFSSLP-SSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPLEF 632 (675)
Q Consensus 557 ~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i 632 (675)
..+|. +..+++|+.|+|++ |.+..+| ..++.|++|++|+|++|+++. +..+++|++|++|+|++|++..+|..+
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 34554 67788888888886 8888775 568888888888888888887 446788888888888888888888765
Q ss_pred cCCCCCCEecCcCcc
Q 005834 633 GQLTRLQLLDLSNCR 647 (675)
Q Consensus 633 ~~L~~L~~L~l~~~~ 647 (675)
.....|+.|++.+|.
T Consensus 100 ~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 100 VQGLSLQELVLSGNP 114 (347)
T ss_dssp TCSCCCCEEECCSSC
T ss_pred cccCCceEEEeeCCC
Confidence 444448888888876
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=4.5e-09 Score=109.69 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=88.8
Q ss_pred CCeEEecCCCCCccCCCC--cC-----CCccceeEeccccCcccc--cchhhhcCC-CCccEEEecCCCCCCCcc-ccc-
Q 005834 521 GPIAISLPYRGIQVLPER--LQ-----CPRLELLLLLEKGGGSMP--ISDHFFDGT-EGLRVLNFTGIHFSSLPS-SLG- 588 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~--~~-----~~~L~~L~l~~~~~~~~~--~~~~~~~~l-~~L~~L~l~~~~~~~lp~-~i~- 588 (675)
.++.+.+++|.+...... .. +++|+.|++..|...... .....+..+ ++|++|++++|.++..+. .+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 677777777776553221 12 267777777655432211 111123344 677788888777765432 222
Q ss_pred ---c-ccCCCEEEeccccCCC------cccccCCC-CCcEEEeeCCCCCccch-----hhcCC-CCCCEecCcCcccCcc
Q 005834 589 ---R-LINLQTLCLEYCRLKD------IVIVGQLK-KLEILSFRGSDIERLPL-----EFGQL-TRLQLLDLSNCRRLEV 651 (675)
Q Consensus 589 ---~-L~~L~~L~l~~~~l~~------~~~i~~l~-~L~~L~l~~~~i~~lp~-----~i~~L-~~L~~L~l~~~~~l~~ 651 (675)
. .++|++|++++|.+.. +..+..++ +|++|+|++|.++..+. .+..+ ++|++|++++|. +..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh
Confidence 2 2578888888877663 22344454 78888888887764432 34444 478888888876 555
Q ss_pred -----cchhhhhccCCccCEEeCcCCC
Q 005834 652 -----ITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 652 -----lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+|..+.. ..++|++|++++|.
T Consensus 211 ~~~~~l~~~l~~-~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 211 KSYAELAYIFSS-IPNHVVSLNLCLNC 236 (362)
T ss_dssp SCHHHHHHHHHH-SCTTCCEEECCSSC
T ss_pred hHHHHHHHHHhc-CCCCceEEECcCCC
Confidence 4544443 23478888887764
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.77 E-value=2.1e-07 Score=95.24 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=108.5
Q ss_pred cCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.....|+|++..++.+..++. ......+.|+|++|+|||++|+.+++.... ...++..+......++...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~~ 83 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAAI 83 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHHH
Confidence 345678999999888887775 234467899999999999999999987642 2334444333232222211
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccccCCCCccccccc-----------cCCCCeE
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVGIPSGDVKKERM-----------DDQRRCT 297 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~s~ 297 (675)
+. ..+ .++.+|++|++..... ...+...+........ ....+.+
T Consensus 84 ----l~-----------------~~~--~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 84 ----LA-----------------NSL--EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ----HT-----------------TTC--CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ----HH-----------------Hhc--cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 11 001 2456788888865421 1111000000000000 0112345
Q ss_pred EEEeccchh-HHhhhcCC-cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHh
Q 005834 298 IILTSRRQD-LLRNVMNS-QKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKALK 371 (675)
Q Consensus 298 ilvTtR~~~-va~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 371 (675)
+|.||.... +....... ...+.+.+++.+|...++.+.+.... ..--.+..+.+++.++|.|-.+..+...+.
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666665432 11111122 25899999999999999988875322 122346788999999999988777666553
No 149
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.74 E-value=5.1e-09 Score=109.23 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=79.3
Q ss_pred CCCeEEecCCCCCccCCCCc------C-CCccceeEeccccCcccc--cchhhhcCCC-CccEEEecCCCCCCC-cccc-
Q 005834 520 EGPIAISLPYRGIQVLPERL------Q-CPRLELLLLLEKGGGSMP--ISDHFFDGTE-GLRVLNFTGIHFSSL-PSSL- 587 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~~~------~-~~~L~~L~l~~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~~~~~l-p~~i- 587 (675)
..++.+.+.+|.+...+... . +++|+.|++++|...... .....+..++ .|++|++++|.++.. +..+
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 45666777666665443211 1 246777777554432111 1112233343 677777777766533 2222
Q ss_pred ---ccc-cCCCEEEeccccCCC------cccccC-CCCCcEEEeeCCCCCccch-----hhcCCCCCCEecCcCcccCcc
Q 005834 588 ---GRL-INLQTLCLEYCRLKD------IVIVGQ-LKKLEILSFRGSDIERLPL-----EFGQLTRLQLLDLSNCRRLEV 651 (675)
Q Consensus 588 ---~~L-~~L~~L~l~~~~l~~------~~~i~~-l~~L~~L~l~~~~i~~lp~-----~i~~L~~L~~L~l~~~~~l~~ 651 (675)
..+ ++|++|+|++|.+.. +..+.. .++|++|+|++|.+...+. .+..+++|++|++++|. +..
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~ 267 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKN 267 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTT
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccc
Confidence 233 467777777776654 223333 2467777777776654432 24556667777777664 222
Q ss_pred cchh-------hhhccCCccCEEeCcCCC
Q 005834 652 ITPN-------VICQSWLHLEVFGMAASR 673 (675)
Q Consensus 652 lp~~-------~~~~~L~~L~~L~l~~c~ 673 (675)
++.. .+. ++++|++|++++++
T Consensus 268 i~~~~~~~l~~~~~-~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 268 MSKEQCKALGAAFP-NIQKIILVDKNGKE 295 (362)
T ss_dssp CCHHHHHHHHTTST-TCCEEEEECTTSCB
T ss_pred cCHHHHHHHHHHhc-cCCceEEEecCCCc
Confidence 2221 112 46667777776653
No 150
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.74 E-value=1.2e-07 Score=96.75 Aligned_cols=188 Identities=11% Similarity=0.126 Sum_probs=114.3
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD-KVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++...... +. ..+.++.+.......+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~------ 85 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVV------ 85 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTS------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHHH------
Confidence 344556889999999999998876666699999999999999999998753211 11 1233444332111110
Q ss_pred HhCCCcccCcCHHHHHHHHHHH--HhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccchh-HH
Q 005834 234 DLGIKFELNESIFDRANRLCRV--LKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD-LL 308 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-va 308 (675)
.+........ +..+++.++|+|++.... ..+.+...+.. ...++++|+||.... +.
T Consensus 86 ------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 86 ------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-------YSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ------------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------SSSSEEEEEEESCGGGSC
T ss_pred ------------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------cCCCCeEEEEeCChhhcc
Confidence 0111111100 112457899999996542 22223222222 345677777775543 22
Q ss_pred hhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHHH
Q 005834 309 RNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAKA 369 (675)
Q Consensus 309 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 369 (675)
.........+.+.+++.++...++...+..... .--.+..+.+++.++|.+..+......
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222334468999999999999999887753221 223457788999999998765544433
No 151
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.72 E-value=3.2e-08 Score=102.67 Aligned_cols=147 Identities=17% Similarity=0.118 Sum_probs=110.0
Q ss_pred cCCCeEEecCCCCCccCCCCc--CCCccceeEeccccCcccccchhhhcCC-CCccEEEecCCCCCCCccccccccCCCE
Q 005834 519 QEGPIAISLPYRGIQVLPERL--QCPRLELLLLLEKGGGSMPISDHFFDGT-EGLRVLNFTGIHFSSLPSSLGRLINLQT 595 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~lp~~i~~L~~L~~ 595 (675)
..+++.+.+.+|.+..++... ...++..|.+..+. ....++...|..+ ..++.|++++|.++.+|..+....+|+.
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhH
Confidence 356788888888887776654 34455566663322 2223334445555 4689999999999999888888889999
Q ss_pred EEecc-ccCCC-cc-cccCCCCCcEEEeeCCCCCccchhhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 596 LCLEY-CRLKD-IV-IVGQLKKLEILSFRGSDIERLPLEFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 596 L~l~~-~~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
|.+.+ |.++. |. .+..+++|++|++++|+++.+|.. .+.+|++|.+.++.+++.+|. +. ++++|+.+++..
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~--l~-~l~~L~~l~l~~ 255 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT--LE-KLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC--TT-TCCSCCEEECSC
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC--ch-hCcChhhCcCCC
Confidence 99986 55777 43 578999999999999999999974 366778888877788899996 44 699999999864
No 152
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.70 E-value=4.2e-09 Score=113.77 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=88.9
Q ss_pred CCCeEEecCCCCCccC------CCC-cCCCccceeEeccccCcccc--cchhhhcCCCCccEEEecCCCCCCC-cccccc
Q 005834 520 EGPIAISLPYRGIQVL------PER-LQCPRLELLLLLEKGGGSMP--ISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGR 589 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~------~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~ 589 (675)
..++++.+.+|.+... +.. ..+++|+.|++..+...... .....+..+++|+.|++++|.+... +..+..
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 5566777766655431 111 13567777777555332211 0122345567777777777766521 222222
Q ss_pred -----ccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCCcc-chhhc----C-CCCCCEecCcCcccCc--
Q 005834 590 -----LINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIERL-PLEFG----Q-LTRLQLLDLSNCRRLE-- 650 (675)
Q Consensus 590 -----L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~l-p~~i~----~-L~~L~~L~l~~~~~l~-- 650 (675)
.++|++|++++|.++. +..+..+++|++|++++|.+... +..+. . .++|++|++++|. +.
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 385 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDS 385 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChh
Confidence 2577777777777654 23455668888888888877643 22232 2 5678888888876 54
Q ss_pred ---ccchhhhhccCCccCEEeCcCCC
Q 005834 651 ---VITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 651 ---~lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.+|..+. .+++|++|++++|+
T Consensus 386 ~~~~l~~~l~--~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 386 SCSSLAATLL--ANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHH--HCCCCCEEECCSSS
T ss_pred hHHHHHHHHH--hCCCccEEECCCCC
Confidence 5665554 38888888888774
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.68 E-value=1.8e-07 Score=97.91 Aligned_cols=197 Identities=11% Similarity=0.149 Sum_probs=110.8
Q ss_pred CccccccHHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDL 235 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 235 (675)
....++|++..++.+..++..+. .+.+.|+|.+|+||||+|+.+++.......+.. .......-...+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 34568999999999999887544 457899999999999999999987753221100 0000000001111000
Q ss_pred CCCc---cc-CcCHHHHHHHHHHHHh----ccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccch
Q 005834 236 GIKF---EL-NESIFDRANRLCRVLK----NEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ 305 (675)
Q Consensus 236 ~~~~---~~-~~~~~~~~~~l~~~l~----~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~ 305 (675)
.... .. .....+....+.+.+. .+++.++|+||+.... .++.+...+.. ...+..+|++|...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------PPEHVKFLLATTDP 159 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------CCSSEEEEEEESCG
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------CCCceEEEEEeCCh
Confidence 0000 00 0000111222333332 2457899999996542 22222111111 23456666666543
Q ss_pred h-HHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHHH
Q 005834 306 D-LLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLAK 368 (675)
Q Consensus 306 ~-va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 368 (675)
. +..........+++.+++.++...++.+.+.... ..--.+....|++.++|.|..+..+..
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2 2222334457899999999999999987764211 112245678899999999987766543
No 154
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.9e-07 Score=91.55 Aligned_cols=169 Identities=11% Similarity=0.109 Sum_probs=105.3
Q ss_pred cccHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC---C-C-eEEEEEeCCCCCHHHHHHHH
Q 005834 161 FDSRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL---F-D-KVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~~~i 231 (675)
..||++++++|...|. .+..+.+.|+|++|+|||++++.|++....... . . ..+.+++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 5699999999987775 567789999999999999999999998864321 1 1 35677777778889999999
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHH--hccCeEEEEecCcccccccccccCCCCcccccccc--CCCCe--EEEEeccch
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVL--KNEERHLIILDNIWGELKFDEVGIPSGDVKKERMD--DQRRC--TIILTSRRQ 305 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~--~~~~s--~ilvTtR~~ 305 (675)
++++...........+....+...+ ..+++++++||+++....-+ ++..++. ....+ .||.++...
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~--------~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEK--------ILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTH--------HHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcch--------HHHHHHhcccccCCcEEEEEEecCc
Confidence 9999543221122233444444443 23468999999996543111 1111110 11222 233333322
Q ss_pred h-----HHhhhc-C-CcceEecCCCCHHHHHHHHHHHhC
Q 005834 306 D-----LLRNVM-N-SQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 306 ~-----va~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
+ +..... . ....+.+++++.+|-.+++.+++.
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 111000 1 125799999999999999988864
No 155
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.68 E-value=1e-08 Score=110.69 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=56.0
Q ss_pred hcCCCCccEEEecCCCCCCC-ccccc-----cccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCCcc---
Q 005834 564 FDGTEGLRVLNFTGIHFSSL-PSSLG-----RLINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIERL--- 628 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~l-p~~i~-----~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~l--- 628 (675)
+..+++|+.|++++|.+... +..+. .+++|++|++++|.+.. +..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34455666666666555421 11221 13456666666665554 23445566666666666655432
Q ss_pred --chh-hcCCCCCCEecCcCcccCcc-----cchhhhhccCCccCEEeCcCC
Q 005834 629 --PLE-FGQLTRLQLLDLSNCRRLEV-----ITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 629 --p~~-i~~L~~L~~L~l~~~~~l~~-----lp~~~~~~~L~~L~~L~l~~c 672 (675)
+.. +..+++|++|++++|. +.. +|..+. ++++|++|++++|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~--~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLR--AKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH--HCTTCCEEECTTC
T ss_pred HHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHh--hCCCcceEECCCC
Confidence 122 2245666666666664 444 444333 3677777777765
No 156
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.62 E-value=1.3e-07 Score=88.44 Aligned_cols=161 Identities=14% Similarity=0.249 Sum_probs=88.7
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-----CCCeEEEEEeCCCCCHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK-----LFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
....++||+++++.+.+++.....+.+.|+|.+|+|||++|+.+++...... .....+++.++. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 3456889999999999999876677889999999999999999999864321 012344443321 10
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHH-hccCeEEEEecCcccccccc--cccCCCCccccccccCCCCeEEEEeccchhHH
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVL-KNEERHLIILDNIWGELKFD--EVGIPSGDVKKERMDDQRRCTIILTSRRQDLL 308 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~k~~LlVlDdv~~~~~~~--~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~va 308 (675)
. +... ..........+.+.+ ..+++.+||+||++....-. .........+...+ ...+..+|+||......
T Consensus 91 -~--~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 -A--GAKY--RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-ARGELHCVGATTLDEYR 164 (195)
T ss_dssp -T--TTCS--HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HTTSCCEEEEECHHHHH
T ss_pred -c--cCCc--cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-ccCCeEEEEeCCHHHHH
Confidence 0 0000 001112222333323 23467899999996542100 00001111111111 22345566666554321
Q ss_pred ------hhhcCCcceEecCCCCHHHHHHHH
Q 005834 309 ------RNVMNSQKEIQIDALSKEEALHLF 332 (675)
Q Consensus 309 ------~~~~~~~~~~~l~~L~~~e~~~Lf 332 (675)
.........+.+.+++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 112233347889999988876543
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=1.5e-07 Score=97.31 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=71.8
Q ss_pred EecCCC-CCccCCCCcCCCccceeEecc-ccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccc
Q 005834 525 ISLPYR-GIQVLPERLQCPRLELLLLLE-KGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYC 601 (675)
Q Consensus 525 lsl~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~ 601 (675)
+...++ .+..+|....+++|+.|++++ |.. ..++...|.++++|+.|+|++|.++.+ |..++.|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 677777744677888888854 443 334455678888888888888888866 446788888888888888
Q ss_pred cCCC-cccccCCCCCcEEEeeCCCCC
Q 005834 602 RLKD-IVIVGQLKKLEILSFRGSDIE 626 (675)
Q Consensus 602 ~l~~-~~~i~~l~~L~~L~l~~~~i~ 626 (675)
+++. |+.+....+|++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 8887 544443334888888888766
No 158
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=1.8e-06 Score=86.42 Aligned_cols=187 Identities=20% Similarity=0.202 Sum_probs=104.9
Q ss_pred cCccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
.....++|.++.++.+.+.+.. ...+-+.|+|++|+|||+||+.+++..... .+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3456788999999988887642 345679999999999999999999876421 2333332211
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc---------cccccCCCCcccccc--cc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK---------FDEVGIPSGDVKKER--MD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~~~~~~~~~~~~~~~--~~ 291 (675)
. .. ..........+.......++.+|+||++..... -......+..++... ..
T Consensus 89 ~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 K--------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp C--------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred H--------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 1 00 011122333344444444678999999965310 000000000000000 01
Q ss_pred CCCCeEEEEeccchhHHh-hhc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC-hhHHHH
Q 005834 292 DQRRCTIILTSRRQDLLR-NVM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL-PVALIT 365 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va~-~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~ 365 (675)
...+..||.||....... ... .-...+.+++.+.++..+++...+.......+. ....+++.+.|. |-.+..
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHHHHHH
Confidence 334677788886543221 111 122478999999999999999887633222111 246777777774 434443
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=7.3e-08 Score=100.47 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=34.6
Q ss_pred CCCccEEEecCCCCCC-----CccccccccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCC-----ccch
Q 005834 567 TEGLRVLNFTGIHFSS-----LPSSLGRLINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIE-----RLPL 630 (675)
Q Consensus 567 l~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~-----~lp~ 630 (675)
.+.|+.|+|++|.++. ++..+..+++|++|+|++|.+.. ...+...++|++|+|++|.++ .++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3444555555444431 22333344445555555544432 122333444555555544443 1222
Q ss_pred hhcCCCCCCEecCcCcc
Q 005834 631 EFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 631 ~i~~L~~L~~L~l~~~~ 647 (675)
.+...++|++|++++|.
T Consensus 234 ~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 234 AAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHCSSCCEEECTTSS
T ss_pred HHHhCCCCCEEeccCCC
Confidence 33334445555554443
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.41 E-value=2.9e-06 Score=90.17 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=108.2
Q ss_pred ccCccccccHHHHH---HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHH
Q 005834 155 VKDYEAFDSRKKVF---QDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDK 230 (675)
Q Consensus 155 ~~~~~~~~gr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~ 230 (675)
+.....++|.+..+ ..+...+..+..+.+.|+|.+|+||||+|+.+++..... ++.++.. ....++ +.
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~ 93 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-RE 93 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HH
Confidence 34556788999888 677777877777889999999999999999999886432 2222221 122221 11
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEE-eccchh-
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIIL-TSRRQD- 306 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilv-TtR~~~- 306 (675)
++ .........+++.+|++|++.... ..+.+... +..+ ...+|. ||.+..
T Consensus 94 ~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~--------le~~-~v~lI~att~n~~~ 147 (447)
T 3pvs_A 94 AI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPH--------IEDG-TITFIGATTENPSF 147 (447)
T ss_dssp HH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHH--------HHTT-SCEEEEEESSCGGG
T ss_pred HH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHH--------HhcC-ceEEEecCCCCccc
Confidence 11 111111123467999999996542 22222111 1122 233443 444432
Q ss_pred -HHhhhcCCcceEecCCCCHHHHHHHHHHHhCCC------CCCCCchHHHHHHHHHhCCChhHHHHHHHH
Q 005834 307 -LLRNVMNSQKEIQIDALSKEEALHLFQKIVGDS------MKTSAFQPIAHEIVGRCGELPVALITLAKA 369 (675)
Q Consensus 307 -va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~------~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 369 (675)
+..........+.+.+++.++...++.+.+... ....--.+..+.|++.++|.+-.+..+...
T Consensus 148 ~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 148 ELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp SSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 212233445689999999999999998886531 111123467788889999988655544433
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=1.2e-06 Score=85.14 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=102.9
Q ss_pred CccccccH---HHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 157 DYEAFDSR---KKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 157 ~~~~~~gr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
....|+|+ +..++.+..+......+.+.|+|.+|+||||+|+.+++..... ...+.|+.++..... +.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-
Confidence 34456653 3556666666655567889999999999999999999987644 334667765432110 00
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc----cccccCCCCccccccccCCCCeEEEEeccchhH--
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK----FDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL-- 307 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-- 307 (675)
...+.+ .++.+||+||++.... .+.+...+ .... .....++|+||+...-
T Consensus 97 -----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l----~~~~-~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 97 -----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLY----NRVA-EQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHH----HHHH-HHCSCEEEEEESSCTTTT
T ss_pred -----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHH----HHHH-HcCCCeEEEEcCCCHHHH
Confidence 000111 2467999999965432 11111111 0000 1112247777764321
Q ss_pred --H-hhh---cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 308 --L-RNV---MNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 308 --a-~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
. ... ......+.+.+++.++..+++...+.... ..--.+..+.+++.++|.+-.+..+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 0 001 11226899999999999999988764211 12235677889999999876554443
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.5e-06 Score=90.05 Aligned_cols=199 Identities=13% Similarity=0.124 Sum_probs=112.2
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC-CeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF-DKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++.......+ ..+..+..+.......+...+..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKN 112 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHH
Confidence 34456788999999999999887655558999999999999999999875421001 12334444443333322221111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccchh-HHhh
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD-LLRN 310 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-va~~ 310 (675)
............ .......+++-++++|++.... ....+...+.. .....++|++|.... +...
T Consensus 113 ~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~-------~~~~~~~il~~~~~~~l~~~ 179 (353)
T 1sxj_D 113 FARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMET-------YSGVTRFCLICNYVTRIIDP 179 (353)
T ss_dssp HHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCHH
T ss_pred Hhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh-------cCCCceEEEEeCchhhCcch
Confidence 111000000000 0011112345799999986542 11222111111 234566666664432 2121
Q ss_pred hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 311 VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
.......+.+.+++.++....+...+.... ..--.+..+.|++.++|.|-.+..+.
T Consensus 180 l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 180 LASQCSKFRFKALDASNAIDRLRFISEQEN-VKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHSEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhccCceEEeCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222234889999999999999988764321 11225678899999999987654443
No 163
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.36 E-value=1.1e-05 Score=80.01 Aligned_cols=186 Identities=16% Similarity=0.174 Sum_probs=93.5
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHH
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVL 256 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 256 (675)
....+.+.|+|.+|+|||++|+.+++.... . .+.+..+... .+.. ..........+.+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------------~g~~---~~~~~~~~~~~~~~~ 120 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------------IGFS---ETAKCQAMKKIFDDA 120 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC------------TTCC---HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh------------cCCc---hHHHHHHHHHHHHHH
Confidence 345678899999999999999999997542 2 1222222110 0100 000111222233333
Q ss_pred hccCeEEEEecCcccccccccccCCCC----cccccccc----CCCCeEEEEeccchhHHhh--hcCC-cceEecCCCCH
Q 005834 257 KNEERHLIILDNIWGELKFDEVGIPSG----DVKKERMD----DQRRCTIILTSRRQDLLRN--VMNS-QKEIQIDALSK 325 (675)
Q Consensus 257 ~~~k~~LlVlDdv~~~~~~~~~~~~~~----~~~~~~~~----~~~~s~ilvTtR~~~va~~--~~~~-~~~~~l~~L~~ 325 (675)
...++.+|++|++.............. ..+..++. ......||.||........ ..+. ...+.+++++.
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 334689999999865311000000000 00001111 2234456667766543221 1222 45789999988
Q ss_pred -HHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh--HHHHHHHHHh----cCChHHHHHHHHHHhhc
Q 005834 326 -EEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV--ALITLAKALK----NMSLETWKYVLRQLRSS 388 (675)
Q Consensus 326 -~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL--ai~~~~~~L~----~~~~~~w~~~l~~l~~~ 388 (675)
++-..++.+.. .--.+....|++.+.|.+. .+..+-..+. ......+..+++.+...
T Consensus 201 r~~i~~i~~~~~------~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 201 GEQLLEALELLG------NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHHHT------CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC------CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 66666655531 1124567888999988422 2333323222 23456667776665543
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=4.1e-07 Score=82.70 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCccEEEecCCCCCCC-ccccccccCCCEEEecccc-CCC--cccccCC----CCCcEEEeeCC-CCCcc-chhhcCCCC
Q 005834 568 EGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCR-LKD--IVIVGQL----KKLEILSFRGS-DIERL-PLEFGQLTR 637 (675)
Q Consensus 568 ~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~-l~~--~~~i~~l----~~L~~L~l~~~-~i~~l-p~~i~~L~~ 637 (675)
..|+.||+++|.++.. ...+..+++|+.|+|++|. +++ ...++.+ ++|++|+|++| +|+.- =..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4699999999998742 3557899999999999996 776 6777775 47999999998 47731 124678999
Q ss_pred CCEecCcCcccCccc
Q 005834 638 LQLLDLSNCRRLEVI 652 (675)
Q Consensus 638 L~~L~l~~~~~l~~l 652 (675)
|++|++++|+.++..
T Consensus 141 L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEK 155 (176)
T ss_dssp CCEEEEESCTTCCCH
T ss_pred CCEEECCCCCCCCch
Confidence 999999999877754
No 165
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=3.2e-06 Score=87.60 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=108.2
Q ss_pred ccCccccccHHHHHHHHHHHh-ccCCccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCe-----------------
Q 005834 155 VKDYEAFDSRKKVFQDVLEAL-KDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK----LFDK----------------- 212 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~----------------- 212 (675)
|.....++|++..++.+.+++ ..+..+.+.|+|+.|+||||+|+.+++...... .++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 344567889999999999988 655555599999999999999999988542110 0111
Q ss_pred ---EEEEEeCCCC-CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccccCCCCccc
Q 005834 213 ---VAMAEVTENP-DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVGIPSGDVK 286 (675)
Q Consensus 213 ---~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~~ 286 (675)
.+.+..+... ......++++..+........ .. .+ ..+. +++-++|+|++..... .+.+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~-- 160 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF----QD-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEK-- 160 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH--
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhccccc----cc-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHh--
Confidence 1111111100 000112222222211110000 00 00 0012 2567999999966321 1112111111
Q ss_pred cccccCCCCeEEEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHhCCChhHHH
Q 005834 287 KERMDDQRRCTIILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAF-QPIAHEIVGRCGELPVALI 364 (675)
Q Consensus 287 ~~~~~~~~~s~ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l-~~~~~~I~~~c~GlPLai~ 364 (675)
...++.+|++|... .+..........+++.+++.++....+.+.+..... .-- .+..+.|++.++|.+-.+.
T Consensus 161 -----~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 161 -----YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp -----STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHH
T ss_pred -----hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHH
Confidence 23456777777653 222223344578999999999999999887642111 111 3567899999999986655
Q ss_pred HHHHH
Q 005834 365 TLAKA 369 (675)
Q Consensus 365 ~~~~~ 369 (675)
.+...
T Consensus 235 ~~l~~ 239 (354)
T 1sxj_E 235 LMLES 239 (354)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 54443
No 166
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.30 E-value=1.8e-05 Score=77.97 Aligned_cols=184 Identities=16% Similarity=0.138 Sum_probs=95.8
Q ss_pred CccccccHHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQDVLEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
....++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++.... ..+.+..+.-.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh
Confidence 34567788877766655432 1 23456889999999999999999997642 1334444332110
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc----------cccCCCCcccccc--ccC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD----------EVGIPSGDVKKER--MDD 292 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~----------~~~~~~~~~~~~~--~~~ 292 (675)
. ..........+.+......+.+|++|+++....-. .....+..++..+ ...
T Consensus 79 --------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 --------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred --------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 00111222333333333457899999997541000 0000000000000 012
Q ss_pred CCCeEEEEeccchhHH-hhhcC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh
Q 005834 293 QRRCTIILTSRRQDLL-RNVMN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV 361 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va-~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 361 (675)
..+..||.||...... ..... -...+.++..+.++-.+++...+...............+++.+.|.+-
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 2355666666554321 11111 235788999999999999988765322222222234677787777653
No 167
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.29 E-value=5e-07 Score=100.76 Aligned_cols=150 Identities=9% Similarity=0.016 Sum_probs=77.6
Q ss_pred CCCeEEecCCCCCccCCC------CcCCCccceeEeccccCcc--cccchhhhcCCCCccEEEecCCCCCCCcccccccc
Q 005834 520 EGPIAISLPYRGIQVLPE------RLQCPRLELLLLLEKGGGS--MPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLI 591 (675)
Q Consensus 520 ~~~~~lsl~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~ 591 (675)
.+++.+.+.+|.+..... ...+++|++|++..+.... ......++.++++|+.|++++|.+..+|..+..++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~ 243 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh
Confidence 456667776665432211 0145677777775444321 11222334556777777777766666666666666
Q ss_pred CCCEEEecccc---------------------------CCC-cccccCCCCCcEEEeeCCCCC--ccchhhcCCCCCCEe
Q 005834 592 NLQTLCLEYCR---------------------------LKD-IVIVGQLKKLEILSFRGSDIE--RLPLEFGQLTRLQLL 641 (675)
Q Consensus 592 ~L~~L~l~~~~---------------------------l~~-~~~i~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L 641 (675)
+|++|+++.+. ... +..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 66666665332 222 333445556666666665543 222234556666666
Q ss_pred cCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 642 DLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 642 ~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
+++++..-..++ .+.. .+++|++|++++
T Consensus 324 ~L~~~~~~~~l~-~~~~-~~~~L~~L~L~~ 351 (592)
T 3ogk_B 324 ETRNVIGDRGLE-VLAQ-YCKQLKRLRIER 351 (592)
T ss_dssp EEEGGGHHHHHH-HHHH-HCTTCCEEEEEC
T ss_pred eccCccCHHHHH-HHHH-hCCCCCEEEeec
Confidence 665332111122 2223 466777777773
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=6.9e-06 Score=89.44 Aligned_cols=214 Identities=12% Similarity=0.093 Sum_probs=115.3
Q ss_pred ccCccccccHHHHHHHHHHHhcc-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKD-----------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAE 217 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (675)
|.....++|++..++.+.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44566789999999999999863 1347899999999999999999999873 2 244555
Q ss_pred eCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHH-HhccCeEEEEecCcccccccccccCCCCccccccccCCCCe
Q 005834 218 VTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRV-LKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRC 296 (675)
Q Consensus 218 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s 296 (675)
.+...... +....+........ .........+. ...+++.+|++|++.....-.. ..+ ..+..++.. .+.
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--~~l-~~L~~~l~~-~~~ 180 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMS----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--GGV-GQLAQFCRK-TST 180 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCC----STTTTTC----CCSSTTSEEEEECSGGGCCTTST--THH-HHHHHHHHH-CSS
T ss_pred CCCcchHH-HHHHHHHHHhcccc----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--HHH-HHHHHHHHh-cCC
Confidence 55544433 22222222111100 00000000000 1124678999999965432110 000 001111112 233
Q ss_pred EEEEeccchhH--HhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh-hHHHHHHHHHhc-
Q 005834 297 TIILTSRRQDL--LRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP-VALITLAKALKN- 372 (675)
Q Consensus 297 ~ilvTtR~~~v--a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~L~~- 372 (675)
.||+++..... ..........+.+.+++.++..+.+...+...... --.+....|++.++|.+ -++..+......
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~ 259 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTISTTT 259 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHHHHHS
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC
Confidence 45555443221 11122334589999999999999988876421111 11235778999999954 455554333221
Q ss_pred --CChHHHHHHHH
Q 005834 373 --MSLETWKYVLR 383 (675)
Q Consensus 373 --~~~~~w~~~l~ 383 (675)
.+.+.-..++.
T Consensus 260 ~~It~~~v~~~~~ 272 (516)
T 1sxj_A 260 KTINHENINEISK 272 (516)
T ss_dssp SCCCTTHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 14444444444
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.24 E-value=5.1e-07 Score=94.01 Aligned_cols=151 Identities=12% Similarity=-0.001 Sum_probs=108.8
Q ss_pred cCCCeEEecCCCCCccCC-----CC--cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-cccc---
Q 005834 519 QEGPIAISLPYRGIQVLP-----ER--LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSL--- 587 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~-----~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i--- 587 (675)
...++.+.+.+|.+.... .. ..+++|+.|+++.|...... ...+...+++|+.|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 457889999998885421 11 13479999999776543222 123344567899999999998732 2222
Q ss_pred --ccccCCCEEEeccccCCC------cccccCCCCCcEEEeeCCCCC-----ccchhhcCCCCCCEecCcCcccCccc--
Q 005834 588 --GRLINLQTLCLEYCRLKD------IVIVGQLKKLEILSFRGSDIE-----RLPLEFGQLTRLQLLDLSNCRRLEVI-- 652 (675)
Q Consensus 588 --~~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-- 652 (675)
...++|++|+|++|.+.. ...+..+++|++|+|++|.+. .++..+...++|++|++++|. +...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 246789999999999865 234577899999999999887 356678888999999999987 5533
Q ss_pred ---chhhhhccCCccCEEeCcCCC
Q 005834 653 ---TPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 653 ---p~~~~~~~L~~L~~L~l~~c~ 673 (675)
+..+. ..++|++|++++|+
T Consensus 229 ~~l~~~L~--~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAR--EHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHH--HCSSCCEEECTTSS
T ss_pred HHHHHHHH--hCCCCCEEeccCCC
Confidence 22222 37899999999885
No 170
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.24 E-value=8.5e-06 Score=83.22 Aligned_cols=183 Identities=12% Similarity=0.112 Sum_probs=103.4
Q ss_pred ccCccccccHHHHHHHHHHHhccCCc-cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKL-NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++.... ..+.++.+.. ....+ .+++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~i-~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDFV-RGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHHH-HTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHHH-HHHHH
Confidence 44566789999999999999885544 57778888999999999999987642 2445554432 22222 22111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc---ccccccCCCCccccccccCCCCeEEEEeccchh-HHh
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL---KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD-LLR 309 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~---~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-va~ 309 (675)
....... ..+++.++++|++.... ..+.+...+.. ...+.++|+||.... +..
T Consensus 95 ~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-------~~~~~~iI~~~n~~~~l~~ 151 (324)
T 3u61_B 95 NFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-------YSSNCSIIITANNIDGIIK 151 (324)
T ss_dssp HHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-------HGGGCEEEEEESSGGGSCT
T ss_pred HHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHh-------CCCCcEEEEEeCCccccCH
Confidence 1100000 01367899999996543 11211111111 224567777776543 111
Q ss_pred hhcCCcceEecCCCCHHHHHHHHH-------HHhCCCCCCCCch-HHHHHHHHHhCCChhHHHHHHH
Q 005834 310 NVMNSQKEIQIDALSKEEALHLFQ-------KIVGDSMKTSAFQ-PIAHEIVGRCGELPVALITLAK 368 (675)
Q Consensus 310 ~~~~~~~~~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~l~-~~~~~I~~~c~GlPLai~~~~~ 368 (675)
........+.+++++.++-.+++. +.+.... ..--. +....|++.++|.+-.+.....
T Consensus 152 ~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~gd~R~a~~~L~ 217 (324)
T 3u61_B 152 PLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIADMKVVAALVKKNFPDFRKTIGELD 217 (324)
T ss_dssp THHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSCHHHHHHHHHHTCSCTTHHHHHHH
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111223579999999888544332 2222111 11113 6788899999888765443333
No 171
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.24 E-value=7e-07 Score=99.52 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=62.2
Q ss_pred CCccceeEeccccCcccccchhhhcCCCCccEEEec----CCCCCCCc------cccccccCCCEEEecccc--CCC--c
Q 005834 541 CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFT----GIHFSSLP------SSLGRLINLQTLCLEYCR--LKD--I 606 (675)
Q Consensus 541 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~----~~~~~~lp------~~i~~L~~L~~L~l~~~~--l~~--~ 606 (675)
+++|+.|.+..+.... ..+..+...+++|+.|+++ .+.++..| ..+..+++|++|+++.|. +.. +
T Consensus 377 ~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 5566666663222111 1111222235566666664 33444322 224445666666665443 333 3
Q ss_pred cccc-CCCCCcEEEeeCCCCC--ccchhhcCCCCCCEecCcCcccCccc-chhhhhccCCccCEEeCcCCC
Q 005834 607 VIVG-QLKKLEILSFRGSDIE--RLPLEFGQLTRLQLLDLSNCRRLEVI-TPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 607 ~~i~-~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~~~~~~L~~L~~L~l~~c~ 673 (675)
..++ .+++|++|++++|.++ .+|..+..+++|+.|++++|. +..- +..+.. .+++|++|++++|+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~-~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT-KLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH-HCSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH-hcCccCeeECcCCc
Confidence 3333 2556666666666554 234445556666666666665 3221 112222 36666666666654
No 172
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=2e-06 Score=88.12 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=31.7
Q ss_pred cCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCC-EecCcCcccCcccchhhhhccCCccCE
Q 005834 591 INLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQ-LLDLSNCRRLEVITPNVICQSWLHLEV 666 (675)
Q Consensus 591 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~-~L~l~~~~~l~~lp~~~~~~~L~~L~~ 666 (675)
++|+.|+|++|+++. ...+..+.+|+.|++.+| ++.+|. .|..+.+|+ .+++.+ .+..++...+. ++++|+.
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~ 301 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFM-GCDNLRY 301 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTT-TCTTEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhh-CCccCCE
Confidence 344444444444443 123444444444444443 444433 244444444 444443 23444444443 4444444
Q ss_pred EeC
Q 005834 667 FGM 669 (675)
Q Consensus 667 L~l 669 (675)
|++
T Consensus 302 l~l 304 (329)
T 3sb4_A 302 VLA 304 (329)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 173
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=1.2e-05 Score=82.67 Aligned_cols=183 Identities=11% Similarity=0.150 Sum_probs=103.8
Q ss_pred ccCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC-eEEEEEeCCCCCHHHHHHHHHH
Q 005834 155 VKDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD-KVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
|.....++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++..... .+. .+.-++.+.......+.. ++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir~-~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVRN-QIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHHT-HHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHHH-HHH
Confidence 33455677998888988888887766569999999999999999999886422 111 122333333222222211 111
Q ss_pred HhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccch-hHHhh
Q 005834 234 DLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQ-DLLRN 310 (675)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~va~~ 310 (675)
.+..... .+ .+.+-++|+|++.... ..+.+...+.. ....++++++|... .+...
T Consensus 99 ~~~~~~~--------------~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~-------~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 99 DFASTRQ--------------IF-SKGFKLIILDEADAMTNAAQNALRRVIER-------YTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp HHHHBCC--------------SS-SCSCEEEEETTGGGSCHHHHHHHHHHHHH-------TTTTEEEEEEESCGGGSCHH
T ss_pred HHHhhcc--------------cC-CCCceEEEEeCCCCCCHHHHHHHHHHHhc-------CCCCeEEEEEecCccccchh
Confidence 1100000 00 1246789999986432 11222111111 22345666665433 22222
Q ss_pred hcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 311 VMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 311 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
.......+.+.+++.++..+.+.+.+.... ..--.+..+.|++.++|.+--
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEK-LKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CCBCHHHHHHHHHHHTTCHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 233445889999999999888887763211 111245677888999998753
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.23 E-value=2.3e-05 Score=81.01 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=104.3
Q ss_pred CccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQDVLEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
....++|.+..++.+.+.+. ....+.|.|+|.+|+|||++|+.+++.... ..+.++.+.-...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc
Confidence 44567899999888887763 234568999999999999999999987632 2344554322110
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc-------------cccccCCCCcccccccc
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK-------------FDEVGIPSGDVKKERMD 291 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~~~ 291 (675)
. ..........+.......++.+|+||++..... ...+...+... ...
T Consensus 157 --------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~---~~~ 217 (357)
T 3d8b_A 157 --------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA---TTS 217 (357)
T ss_dssp --------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------
T ss_pred --------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc---ccc
Confidence 0 001122233333333334678999999954311 01110000000 000
Q ss_pred CCCCeEEEEeccchh-HHhhhc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCC-ChhHHHHHHH
Q 005834 292 DQRRCTIILTSRRQD-LLRNVM-NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGE-LPVALITLAK 368 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~-va~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 368 (675)
...+..||.||.... +..... .....+.+...+.++..+++...+..... .-..+....|++.+.| .|-.|..+..
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 123455665665432 211111 22347789999999999998887643211 1124567888999988 4445555443
No 175
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=2.3e-06 Score=87.75 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=86.7
Q ss_pred CCCccEEEecCCCCCCCcc-ccccccCCCEEEeccccCCC--cccccCCCCCc-EEEeeCCCCCccch-hhcCCCCCCEe
Q 005834 567 TEGLRVLNFTGIHFSSLPS-SLGRLINLQTLCLEYCRLKD--IVIVGQLKKLE-ILSFRGSDIERLPL-EFGQLTRLQLL 641 (675)
Q Consensus 567 l~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~-~L~l~~~~i~~lp~-~i~~L~~L~~L 641 (675)
++.|+.|++++|+++.+|+ .+..+.+|+.+.+..+ ++. ...+.++.+|+ .+++.. .++.++. .|..+++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 7899999999999998865 4889999999999997 665 45788999999 999988 7888864 69999999999
Q ss_pred cCcCcccCcccchhhhhccCCccCEEeC
Q 005834 642 DLSNCRRLEVITPNVICQSWLHLEVFGM 669 (675)
Q Consensus 642 ~l~~~~~l~~lp~~~~~~~L~~L~~L~l 669 (675)
++++|. +..++...+. ++++|+.++.
T Consensus 303 ~l~~n~-i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDK-ITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp EECSSC-CCEECTTTTC-TTCCCCEEEC
T ss_pred EeCCCc-cCccchhhhc-CCcchhhhcc
Confidence 998866 8899998887 8999999874
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.19 E-value=1.5e-05 Score=83.01 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=38.3
Q ss_pred ccccccHHHHHHH---HHHHhccCCc--cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 158 YEAFDSRKKVFQD---VLEALKDDKL--NIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 158 ~~~~~gr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...|+|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5678999988665 4455544433 58999999999999999999998763
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.17 E-value=6.5e-05 Score=76.34 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=104.1
Q ss_pred CccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQDVLEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
....+.|.++.++.+.+.+. ....+-|.++|++|+|||+||+.+++.... ...+.+..+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh-
Confidence 45567788888777776552 123467899999999999999999998621 1223344332211
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccccc--CCCCcccccc---c----cCCCC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVG--IPSGDVKKER---M----DDQRR 295 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~--~~~~~~~~~~---~----~~~~~ 295 (675)
.. ..........+.+.....++.+|++|++.....-..-. .....+...+ + ....+
T Consensus 85 -------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 -------------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 01122334444444444578999999996541100000 0000000000 0 02344
Q ss_pred eEEEEeccchhHH-hhhc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh-hHHHHHH
Q 005834 296 CTIILTSRRQDLL-RNVM-NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP-VALITLA 367 (675)
Q Consensus 296 s~ilvTtR~~~va-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~ 367 (675)
..||.||...... .... .....+.++..+.++-.+++..++...... --......|++.+.|.. -.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566566443211 1111 233578899999999999998887533211 12356778888888874 3344443
No 178
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=3e-05 Score=79.34 Aligned_cols=171 Identities=9% Similarity=0.081 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccC--------------------CCCeEEEEEeC---
Q 005834 164 RKKVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTEDK--------------------LFDKVAMAEVT--- 219 (675)
Q Consensus 164 r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs--- 219 (675)
.++..+.+.+.+..++ .+.+.++|+.|+|||++|+.+++...... |++ ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 4556677777777655 45799999999999999999998764321 223 2233221
Q ss_pred CCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeE
Q 005834 220 ENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCT 297 (675)
Q Consensus 220 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ 297 (675)
....+.+ .+++.+.+..... .+++-++|+|+++... ..+.+...+.. ...++.
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~~-----------------~~~~kvviIdead~l~~~a~naLLk~lEe-------p~~~~~ 140 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHAR-----------------LGGAKVVWVTDAALLTDAAANALLKTLEE-------PPAETW 140 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCCT-----------------TSSCEEEEESCGGGBCHHHHHHHHHHHTS-------CCTTEE
T ss_pred CCCCHHH-HHHHHHHHhhccc-----------------cCCcEEEEECchhhcCHHHHHHHHHHhcC-------CCCCeE
Confidence 1112222 2233333221110 1457899999997642 12222111111 233566
Q ss_pred EEEeccch-hHHhhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 298 IILTSRRQ-DLLRNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 298 ilvTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
+|++|.+. .+..........+.+.+++.++..+.+.+.. .--.+.+..+++.++|.|..+..+
T Consensus 141 ~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 141 FFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 66655543 3333344556789999999999999998875 112356688999999999655443
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.14 E-value=3.8e-05 Score=78.23 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=105.6
Q ss_pred cCccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.....++|.+..++.+.+.+. ....+-+.++|++|+|||+||+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 345678899999888888762 1124578999999999999999999986422 2233321
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc---------cccCCCCccccccccCCC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD---------EVGIPSGDVKKERMDDQR 294 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~~~~~~ 294 (675)
++. . .. ..........+.......++.+|+||++.....-. .+...+-..+........
T Consensus 86 --~l~----~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DLV----S----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HHH----T----TT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HHh----h----cc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 111 0 00 11222334444444444567899999996542100 000000000000001334
Q ss_pred CeEEEEeccchhHHh-hh-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC-hhHHHHH
Q 005834 295 RCTIILTSRRQDLLR-NV-MNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL-PVALITL 366 (675)
Q Consensus 295 ~s~ilvTtR~~~va~-~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 366 (675)
+..||.||....... .. ..-...+.+...+.++-.++|..++...... .-......|++.+.|. +-.|..+
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 556666665532211 00 1223577888899999999999887643221 1234567888888874 4344433
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.13 E-value=0.00011 Score=73.80 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=102.7
Q ss_pred cCccccccHHHHHHHHHHHhcc------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALKD------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 3455788999998888877631 23568899999999999999999987642 223344433211
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccc--cCCCCcccccc---cc------C
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEV--GIPSGDVKKER---MD------D 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~--~~~~~~~~~~~---~~------~ 292 (675)
.. ..........+.......++.+|++|++.....-... ..........+ +. .
T Consensus 93 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 1112233333333333346789999999654210000 00000000000 00 1
Q ss_pred CCCeEEEEeccchhHH-hhhc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHHHH
Q 005834 293 QRRCTIILTSRRQDLL-RNVM-NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALITL 366 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 366 (675)
+.+..||.||...... .... .....+.+...+.++-..++...+..... .--......+++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1345566666553211 1011 12356778888888888888877643211 1123567788888888775 44333
No 181
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.12 E-value=7.2e-05 Score=78.33 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=102.4
Q ss_pred cCccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.....++|.+..++.+.+.+. ....+-+.|+|.+|+|||+||+.+++.... ..+.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 445678999999999888773 123468999999999999999999887542 233333332211
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccc--cCCCCcccccc---cc-----CC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEV--GIPSGDVKKER---MD-----DQ 293 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~--~~~~~~~~~~~---~~-----~~ 293 (675)
. . ..........+.......++.+|+||++.....-..- ......+...+ +. ..
T Consensus 187 ~--~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K--Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0 0011122333333333345689999999654100000 00000000000 00 12
Q ss_pred CCeEEEEeccchhHH-hhhcCC-cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh-HHHHH
Q 005834 294 RRCTIILTSRRQDLL-RNVMNS-QKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV-ALITL 366 (675)
Q Consensus 294 ~~s~ilvTtR~~~va-~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 366 (675)
....||.||...... ...... ...+.+...+.++-..++...+.... ..-..+....|++.+.|..- +|..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 334555566543221 111222 24688999999999999988875332 12234567788888888543 44443
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.12 E-value=2.1e-05 Score=80.75 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=102.3
Q ss_pred cCccccccHHHHHHHHHHHhc-----cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALK-----DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.....++|++..++.+..++. ......+.|+|++|+|||++|+.+++..... .+.+..+.......+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~~-- 98 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDLA-- 98 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHHH--
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHHH--
Confidence 345678999999998888876 2445678999999999999999998875422 2333332221111111
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCcc----c-------cccccCCCCeE
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDV----K-------KERMDDQRRCT 297 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~----~-------~~~~~~~~~s~ 297 (675)
...... .+..+|++|++.... ....+...+.+. + .......++..
T Consensus 99 --------------------~~~~~~--~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 99 --------------------AILTNL--SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --------------------HHHHTC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --------------------HHHHhc--cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 111111 245788888886542 000000000000 0 00000112345
Q ss_pred EEEeccchhH-HhhhcCC-cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 298 IILTSRRQDL-LRNVMNS-QKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 298 ilvTtR~~~v-a~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
+|.+|..... ....... ...+.+.+++.++...++.+.+.... ..--.+..+.|++.+.|.|-.+..+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 6655554321 1111222 36899999999999999988765221 11224567888899999985554443
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.12 E-value=7.9e-06 Score=82.81 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=84.0
Q ss_pred ccccHHHHHHHHHHHhc---------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 160 AFDSRKKVFQDVLEALK---------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
.++|.+..++.+.+.+. ......+.|+|.+|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 36787777777665543 234457899999999999999999988764332222123333210
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc-----------ccccccCCCCccccccccCC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL-----------KFDEVGIPSGDVKKERMDDQ 293 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~-----------~~~~~~~~~~~~~~~~~~~~ 293 (675)
.+.... ..........+.+.. +..+|++|++.... ....+...+. ...
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-------~~~ 167 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-------NNR 167 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-------HCT
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-------cCC
Confidence 010000 011111122222222 34599999997431 1111111111 134
Q ss_pred CCeEEEEeccchhHHh------hhc-CCcceEecCCCCHHHHHHHHHHHhC
Q 005834 294 RRCTIILTSRRQDLLR------NVM-NSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 294 ~~s~ilvTtR~~~va~------~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
.+..||+||....... ... .....+.+++++.++-..++...+.
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 4667777775432210 001 1126899999999999999988764
No 184
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.12 E-value=1.9e-05 Score=84.80 Aligned_cols=151 Identities=18% Similarity=0.241 Sum_probs=86.1
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC---C-C-eEEEEEeCCCCCHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL---F-D-KVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~~~i 231 (675)
....++||+++++.+...+......-+.++|.+|+|||++|+.+++....... . + .++.+..+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 34568999999999999997655667789999999999999999998643210 0 1 122222220
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchh-----
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD----- 306 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~----- 306 (675)
.. ..........+.+.+...++.+|++| ...+..+.+...+ .....++|.+|....
T Consensus 247 --~~------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L---------~~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --KY------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL---------ARGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT---------TSSSCEEEEECCTTTTHHHH
T ss_pred --cc------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh---------cCCCEEEEecCCHHHHHHHh
Confidence 00 00011123334444444467899999 1112212222221 223455666555443
Q ss_pred -HHhhhcCCcceEecCCCCHHHHHHHHHHHhC
Q 005834 307 -LLRNVMNSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 307 -va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
...........+.+++.+.++...++.....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 1111222345799999999999999987764
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=6.7e-06 Score=76.22 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=43.5
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
....++||+.+++.+.+.+.....+.+.|+|.+|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45568899999999999998766778899999999999999999988643
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=4e-05 Score=81.46 Aligned_cols=186 Identities=14% Similarity=0.164 Sum_probs=103.8
Q ss_pred Cccccc-cH--HHHHHHHHHHhccCC-ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 157 DYEAFD-SR--KKVFQDVLEALKDDK-LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 157 ~~~~~~-gr--~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
.+..|+ |. ......+........ ...+.|+|.+|+||||||+.+++.......-..+++++.+ ++..++.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHH
Confidence 344565 53 233344444443333 6789999999999999999999987543111234555433 3344444
Q ss_pred HHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc----cccccCCCCccccccccCCCCeEEEEeccchhH-
Q 005834 233 SDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK----FDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL- 307 (675)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v- 307 (675)
..+... . ...+.+.+. .++-+|++||++.... .+.+...+.. + ...|..||+||....-
T Consensus 177 ~~~~~~-----~----~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~----l--~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 177 DSMKEG-----K----LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNE----L--HDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHTT-----C----HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHH----H--HTTTCEEEEEESSCGGG
T ss_pred HHHHcc-----c----HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHH----H--HHCCCeEEEEECCCHHH
Confidence 433211 1 112333333 1467999999965432 1112111111 0 2346778888875211
Q ss_pred ----H---hhhcCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHH
Q 005834 308 ----L---RNVMNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALIT 365 (675)
Q Consensus 308 ----a---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 365 (675)
. ...+.....+.+++++.++-..++.+.+..... .--.++...|++.++|.+-.+.-
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHH
Confidence 0 111223467899999999999999887641110 11123577888888888754443
No 187
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.08 E-value=1.9e-06 Score=96.08 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=39.4
Q ss_pred cccccCCCEEEeccccCCC--cccccC-CCCCcEEEeeCCCCCcc-chhh-cCCCCCCEecCcCcccCccc-chhhhhcc
Q 005834 587 LGRLINLQTLCLEYCRLKD--IVIVGQ-LKKLEILSFRGSDIERL-PLEF-GQLTRLQLLDLSNCRRLEVI-TPNVICQS 660 (675)
Q Consensus 587 i~~L~~L~~L~l~~~~l~~--~~~i~~-l~~L~~L~l~~~~i~~l-p~~i-~~L~~L~~L~l~~~~~l~~l-p~~~~~~~ 660 (675)
+..+++|++|++++ .+.. +..++. +++|++|++++|.++.. +..+ ..+++|+.|++++|.. ... +..+.. .
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~-~ 504 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANAS-K 504 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGG-G
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHH-h
Confidence 34455566666644 3333 334433 55566666665554321 1122 4455566666665552 211 111222 3
Q ss_pred CCccCEEeCcCCC
Q 005834 661 WLHLEVFGMAASR 673 (675)
Q Consensus 661 L~~L~~L~l~~c~ 673 (675)
+++|++|++++|+
T Consensus 505 l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 505 LETMRSLWMSSCS 517 (594)
T ss_dssp GGGSSEEEEESSC
T ss_pred CCCCCEEeeeCCC
Confidence 5556666665554
No 188
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.08 E-value=6.9e-07 Score=99.64 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=89.8
Q ss_pred cCCCeEEecCCCCCcc-----CCCCc-CCCccceeEeccccCc-ccccchhhhcCCCCccEEEecCC-CCCCCccccccc
Q 005834 519 QEGPIAISLPYRGIQV-----LPERL-QCPRLELLLLLEKGGG-SMPISDHFFDGTEGLRVLNFTGI-HFSSLPSSLGRL 590 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~L 590 (675)
..+++.+.+.+|.+.. ++... .+++|++|.+..+... .......+..++++|++|++++| .+..+|..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 4577888888776533 22222 5778888888655411 11112233455788888888887 333566667777
Q ss_pred cCCCEEEeccccC--------------------------C-----C-cccccCCCCCcEEEeeCCCCCc--cchhhcCCC
Q 005834 591 INLQTLCLEYCRL--------------------------K-----D-IVIVGQLKKLEILSFRGSDIER--LPLEFGQLT 636 (675)
Q Consensus 591 ~~L~~L~l~~~~l--------------------------~-----~-~~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~ 636 (675)
++|++|++..+.. . . +..+..+++|++|++++|.+.. ++..+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 7888887654421 0 0 1122356788888888877552 333456778
Q ss_pred CCCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 637 RLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 637 ~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
+|++|++++|..-..++ .+.. .+++|++|++++
T Consensus 315 ~L~~L~l~~~~~~~~l~-~l~~-~~~~L~~L~L~~ 347 (594)
T 2p1m_B 315 KLQRLWVLDYIEDAGLE-VLAS-TCKDLRELRVFP 347 (594)
T ss_dssp TCCEEEEEGGGHHHHHH-HHHH-HCTTCCEEEEEC
T ss_pred CcCEEeCcCccCHHHHH-HHHH-hCCCCCEEEEec
Confidence 88888888763211222 2233 478888888844
No 189
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.04 E-value=2.4e-05 Score=90.60 Aligned_cols=186 Identities=12% Similarity=0.182 Sum_probs=98.2
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC-----CCeEEEEEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL-----FDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.....++||++++..+++.+.....+-+.++|.+|+||||+|+.+++....... -..++++.++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 445678999999999999987666667889999999999999999998743211 11234443322110
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhc-cCeEEEEecCcccccc---cccccCCCCccccccccCCCCeEEEEeccchh
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKN-EERHLIILDNIWGELK---FDEVGIPSGDVKKERMDDQRRCTIILTSRRQD 306 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlVlDdv~~~~~---~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (675)
+... ..........+.+.+.. +++.+|++|++..... ...- ......+...+.. .+..+|.+|....
T Consensus 240 -----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~-~~~~~~L~~~l~~-~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 -----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA-VDAGNMLKPALAR-GELRLIGATTLDE 310 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHT-TCCCEEEEECHHH
T ss_pred -----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch-HHHHHHHHHHHhC-CCeEEEEecCchH
Confidence 0000 11223334444444443 3679999999965421 0000 0001111111222 3344555554432
Q ss_pred H-----HhhhcCCcceEecCCCCHHHHHHHHHHHhC---CCCCCCCchHHHHHHHHHhC
Q 005834 307 L-----LRNVMNSQKEIQIDALSKEEALHLFQKIVG---DSMKTSAFQPIAHEIVGRCG 357 (675)
Q Consensus 307 v-----a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~l~~~~~~I~~~c~ 357 (675)
. ..........+.+++++.++..+++..... ......-..+....+++.+.
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 2 111223334689999999999999875432 11111122345566666663
No 190
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=5.6e-06 Score=76.93 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=39.1
Q ss_pred hcCCCCccEEEecCCCCCC-----CccccccccCCCEEEeccccCCC------cccccCCCCCcEEEe--eCCCCCc---
Q 005834 564 FDGTEGLRVLNFTGIHFSS-----LPSSLGRLINLQTLCLEYCRLKD------IVIVGQLKKLEILSF--RGSDIER--- 627 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l--~~~~i~~--- 627 (675)
+...+.|++|+|++|.+.. +...+...++|++|+|++|.+.. ...+...++|++|+| ++|.+..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3344555555555555431 22333334455555555555443 123344445555555 4444431
Q ss_pred --cchhhcCCCCCCEecCcCcc
Q 005834 628 --LPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 628 --lp~~i~~L~~L~~L~l~~~~ 647 (675)
+...+...++|++|++++|.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCcCEEeccCCC
Confidence 33334444555555555543
No 191
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.02 E-value=0.00012 Score=73.56 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=99.1
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
....++|.+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.... ..+.+ +
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v------~ 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISI------K 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEE------C
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEE------E
Confidence 345678888887777766531 34567999999999999999999987642 12222 2
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc---cc--cccCCC----Ccccccc--ccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK---FD--EVGIPS----GDVKKER--MDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~~--~~~~~~----~~~~~~~--~~~ 292 (675)
..++.... .+.. ......+.+......+.+|++|++..... .. .-.... ..++..+ +..
T Consensus 82 ~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 22333222 1211 11223333333334679999999964210 00 000000 0000000 012
Q ss_pred CCCeEEEEeccchhHH-hhhcC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhH
Q 005834 293 QRRCTIILTSRRQDLL-RNVMN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVA 362 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va-~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 362 (675)
..+..||.||...... ..... -...+.++..+.++-.+++...+.......+. ....+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 3456677777654322 11122 23578999999999999998877532211111 134566667777643
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.02 E-value=0.00014 Score=77.33 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=101.5
Q ss_pred cCccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
..+..++|.+..++.+.+.+. ....+-|.++|++|+|||+||+.+++.... .-++.++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~-- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSS-- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHH--
Confidence 345568899988888887663 123467999999999999999999998621 122333322
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc---------c----ccccCCCCccccccc
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK---------F----DEVGIPSGDVKKERM 290 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---------~----~~~~~~~~~~~~~~~ 290 (675)
++... ..+.. .. ....+.......++.+|+||++..... . ..+...+.. ..
T Consensus 203 --~l~~~---~~g~~---~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~----~~ 266 (444)
T 2zan_A 203 --DLVSK---WLGES---EK----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG----VG 266 (444)
T ss_dssp --------------C---CC----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC----SS
T ss_pred --HHHhh---hcchH---HH----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC----cc
Confidence 11110 01110 11 123333333334679999999975410 0 011111100 00
Q ss_pred cCCCCeEEEEeccchhHH-hhhc-CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC-hhHHHHH
Q 005834 291 DDQRRCTIILTSRRQDLL-RNVM-NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL-PVALITL 366 (675)
Q Consensus 291 ~~~~~s~ilvTtR~~~va-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 366 (675)
....+..||.||...... .... .....+.++..+.++-..+|..++...... --......|++.+.|. +-.|..+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 023455666666543221 1112 223578888888888889998887533211 1234567888888884 4344443
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.99 E-value=9.8e-05 Score=76.15 Aligned_cols=189 Identities=13% Similarity=0.096 Sum_probs=102.1
Q ss_pred CccccccHHHHHHHHHHHhc------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQDVLEALK------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... .+.+..+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 45567898888888877662 1123468899999999999999999987421 2233221
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccc---------ccccCCCCccccccccCCCC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKF---------DEVGIPSGDVKKERMDDQRR 295 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 295 (675)
++.. .. ..........+.......++.+|+||++.....- ..+...+-..+........+
T Consensus 119 -~l~~----~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DLVS----KW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HHHS----CC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HHhh----hh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 00 0111223334444444346899999999654210 00000000000000012345
Q ss_pred eEEEEeccchhHH-hhh-cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC-hhHHHHHH
Q 005834 296 CTIILTSRRQDLL-RNV-MNSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL-PVALITLA 367 (675)
Q Consensus 296 s~ilvTtR~~~va-~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~ 367 (675)
..||.||...... ... ......+.+...+.++-.+++..++...... --......|++.+.|. |-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566566543211 111 1234578899999999999998887643211 1234567888899884 43444443
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=0.00018 Score=74.15 Aligned_cols=182 Identities=15% Similarity=0.193 Sum_probs=102.5
Q ss_pred cCccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
..+.++.|-++.+++|.+.+. -..++-|.++|++|.|||.||+.+++..... .+.+..+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 345667788887777766543 1235678999999999999999999987643 2344443221
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc---------cccCCCCcccccc--cc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD---------EVGIPSGDVKKER--MD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~--~~ 291 (675)
+ .+ ..........+...-....+++|++|+++....-. .....+..++... +.
T Consensus 220 s--------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 220 Q--------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp C--------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred c--------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 1 00 11122333444444444578999999996541100 0000000000000 11
Q ss_pred CCCCeEEEEeccchhHHhh-hc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 292 DQRRCTIILTSRRQDLLRN-VM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
...+..||.||...+.... .. .-...+.++..+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 3345556666655433211 12 2346889998899999999988876432222211 457778887754
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=6.1e-06 Score=74.91 Aligned_cols=85 Identities=12% Similarity=0.223 Sum_probs=59.5
Q ss_pred CCccceeEeccccCcccccchhhhcCCCCccEEEecCCC-CCC-Cccccccc----cCCCEEEecccc-CCC--cccccC
Q 005834 541 CPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIH-FSS-LPSSLGRL----INLQTLCLEYCR-LKD--IVIVGQ 611 (675)
Q Consensus 541 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-lp~~i~~L----~~L~~L~l~~~~-l~~--~~~i~~ 611 (675)
-.+|+.|+++++......+ ..+.++++|+.|+|++|. ++. --..++.+ ++|++|+|++|. +++ ...+.+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL--~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG--GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred CceEeEEeCcCCCccHHHH--HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 3578899997665332222 225788999999999885 552 12335543 469999999985 777 777888
Q ss_pred CCCCcEEEeeCC-CCCc
Q 005834 612 LKKLEILSFRGS-DIER 627 (675)
Q Consensus 612 l~~L~~L~l~~~-~i~~ 627 (675)
+++|++|++++| .++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 899999999988 4553
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.8e-05 Score=81.64 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=84.2
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCC-Cccccc--cccCCCEEEeccc--c------CCCc-c
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSS-LPSSLG--RLINLQTLCLEYC--R------LKDI-V 607 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~--~L~~L~~L~l~~~--~------l~~~-~ 607 (675)
.+|+|+.|.+.++.. ...+. + .+++|+.|++..+.+.. ....++ .+++|++|+|+.+ . +..+ +
T Consensus 170 ~~P~L~~L~L~g~~~--l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNN--LSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TCTTCCEEEEECCBT--CBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cCCCCcEEEEeCCCC--ceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 578999999966521 22222 2 37899999999888752 122343 7899999998632 1 1111 1
Q ss_pred cc--cCCCCCcEEEeeCCCCCc-cchhh---cCCCCCCEecCcCcccCcc-----cchhhhhccCCccCEEeCcCCC
Q 005834 608 IV--GQLKKLEILSFRGSDIER-LPLEF---GQLTRLQLLDLSNCRRLEV-----ITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 608 ~i--~~l~~L~~L~l~~~~i~~-lp~~i---~~L~~L~~L~l~~~~~l~~-----lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
.+ +.+++|++|+|++|.+.. .+..+ ..+++|++|+++.|. +.. ++..+ . ++++|+.|+++.|.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L-~-~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHV-D-KIKHLKFINMKYNY 318 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTH-H-HHTTCSEEECCSBB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhc-c-cCCcceEEECCCCc
Confidence 12 357899999999998762 22222 357899999999876 544 33332 2 48999999999874
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=8.1e-05 Score=77.95 Aligned_cols=182 Identities=16% Similarity=0.219 Sum_probs=100.7
Q ss_pred cCccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
..+.++.|-++.+++|.+.+. -..++-|.++|++|.|||+||+.+++..... .+.+..+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhc
Confidence 345567788877777666543 1245789999999999999999999987642 3344443322
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc---------ccCCCCcccccc--cc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE---------VGIPSGDVKKER--MD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---------~~~~~~~~~~~~--~~ 291 (675)
+ .+ ..........+...-....+++|++|+++....-.. ....+..++... +.
T Consensus 253 s--------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 253 D--------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp C--------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred c--------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 1 00 111122333444444445789999999965311000 000000011100 11
Q ss_pred CCCCeEEEEeccchhHHhhh-cC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 292 DQRRCTIILTSRRQDLLRNV-MN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
...+..||.||......... .. -...+.++..+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 33455677777554332212 22 234788888888888888887765332222211 356777777754
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.90 E-value=4.7e-05 Score=77.60 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHHhccC--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcC
Q 005834 167 VFQDVLEALKDD--KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNES 244 (675)
Q Consensus 167 ~~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (675)
....+......+ ....+.|+|++|+||||||+.+++..... -..+++++. .++...+...+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHcC------
Confidence 344444444433 35678999999999999999999987543 123455543 23333333333110
Q ss_pred HHHHHHHHHHHHhccCeEEEEecCcccccc---c-ccccCCCCccccccccCCCCeEEEEeccchhH-----Hh---hhc
Q 005834 245 IFDRANRLCRVLKNEERHLIILDNIWGELK---F-DEVGIPSGDVKKERMDDQRRCTIILTSRRQDL-----LR---NVM 312 (675)
Q Consensus 245 ~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~---~-~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-----a~---~~~ 312 (675)
....+.+.+. ++.+|++||+..... + +.+...+.. . ...+..||+||..... .. ...
T Consensus 88 ---~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~----~--~~~~~~iii~~~~~~~~l~~l~~~L~sR~ 156 (324)
T 1l8q_A 88 ---TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNT----L--YLLEKQIILASDRHPQKLDGVSDRLVSRF 156 (324)
T ss_dssp ---CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHH----H--HHTTCEEEEEESSCGGGCTTSCHHHHHHH
T ss_pred ---cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHH----H--HHCCCeEEEEecCChHHHHHhhhHhhhcc
Confidence 1112223333 357999999965431 1 111111110 0 1245567777754311 01 112
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChh
Q 005834 313 NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPV 361 (675)
Q Consensus 313 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 361 (675)
.....+.+++ +.++...++...+.... ..--.+..+.|++.+ |.+-
T Consensus 157 ~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 157 EGGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HTSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHH
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHH
Confidence 2335789999 99999999988775221 112245677888888 7654
No 199
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00016 Score=75.46 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=101.3
Q ss_pred CccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+.++.|-++.+++|.+.+. -..++-|.++|++|.|||+||+.+++..... .+.+..+.-.+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s 281 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ 281 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc
Confidence 34567788887777766542 1356788999999999999999999987642 33444332111
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccc---------cccCCCCcccccc--ccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFD---------EVGIPSGDVKKER--MDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~---------~~~~~~~~~~~~~--~~~ 292 (675)
.. ..........+...-....+++|++|+++....-. .....+..++..+ ...
T Consensus 282 --------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 --------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp --------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred --------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 00 11122233444444444578999999996441100 0000000000000 113
Q ss_pred CCCeEEEEeccchhHH-hhhc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 293 QRRCTIILTSRRQDLL-RNVM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
..+..||.||...... .... .-...+.++..+.++-.++|+.++.......+.. ...|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 3455566666544322 1112 2345888888888888999988876432222221 456778888753
No 200
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=8.8e-05 Score=77.61 Aligned_cols=182 Identities=15% Similarity=0.177 Sum_probs=99.4
Q ss_pred ccCccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC
Q 005834 155 VKDYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN 221 (675)
Q Consensus 155 ~~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 221 (675)
...+.++.|-++.+++|.+.+. -..++-|.++|++|.|||+||+.+++..... .+.+..+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3446677888888888776543 1345788999999999999999999987642 334443321
Q ss_pred CCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccc---------ccccCCCCcccccc--c
Q 005834 222 PDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKF---------DEVGIPSGDVKKER--M 290 (675)
Q Consensus 222 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~---------~~~~~~~~~~~~~~--~ 290 (675)
.+ .+ ..........+...-....+++|++|+++....- ......+..++... +
T Consensus 252 ~~--------------~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 252 VQ--------------MY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CS--------------SC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hh--------------cc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 11 10 1112223334444333346899999998543100 00000000000000 1
Q ss_pred cCCCCeEEEEeccchhHHhhhc-C---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 291 DDQRRCTIILTSRRQDLLRNVM-N---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 291 ~~~~~s~ilvTtR~~~va~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
....+..||.||.........+ . -...+.++..+.++-.++|+.+.......++.. ...|++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCC
Confidence 1233445666665543322122 1 234788888888888888887765222222211 45677788775
No 201
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00038 Score=72.00 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=100.3
Q ss_pred cCccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
..+.++.|-++.+++|.+.+. -...+=|.++|++|.|||.||+.+++..... .+.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh
Confidence 445667788877777666543 1245779999999999999999999987643 2333333211
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc---------ccCCCCccccc--ccc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE---------VGIPSGDVKKE--RMD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~---------~~~~~~~~~~~--~~~ 291 (675)
+ .. ....+.....+...-....+++|++|+++....-.. ....+..++.. ...
T Consensus 254 s--------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 Q--------------KY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp C--------------SS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred h--------------cc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 1 10 111223344444444445789999999865411000 00000001100 012
Q ss_pred CCCCeEEEEeccchhHHhhhc-C---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 292 DQRRCTIILTSRRQDLLRNVM-N---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
...+..||.||...+.....+ . -...+.++.-+.++-.++|+.+.......++.. ...|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 334556666765544332222 1 234678888888888889988875332222211 456777777753
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.80 E-value=1.3e-05 Score=74.40 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=84.0
Q ss_pred hhhhcCCCCccEEEecCC-CCCC-----CccccccccCCCEEEeccccCCC--c----ccccCCCCCcEEEeeCCCCCc-
Q 005834 561 DHFFDGTEGLRVLNFTGI-HFSS-----LPSSLGRLINLQTLCLEYCRLKD--I----VIVGQLKKLEILSFRGSDIER- 627 (675)
Q Consensus 561 ~~~~~~l~~L~~L~l~~~-~~~~-----lp~~i~~L~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~~- 627 (675)
...+...+.|+.|+|++| .+.. +...+...++|++|+|++|.+.. . ..+...++|++|+|++|.|..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344677889999999998 8762 45556777899999999999876 2 345566889999999998873
Q ss_pred ----cchhhcCCCCCCEecC--cCcccCcc-----cchhhhhccCCccCEEeCcCCC
Q 005834 628 ----LPLEFGQLTRLQLLDL--SNCRRLEV-----ITPNVICQSWLHLEVFGMAASR 673 (675)
Q Consensus 628 ----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~~~~~~L~~L~~L~l~~c~ 673 (675)
+...+...++|++|++ ++|. ++. +... +. ..++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~-L~-~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANM-LE-KNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHH-HH-HCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHH-HH-hCCCcCEEeccCCC
Confidence 6677888899999999 6666 443 2222 23 46899999999874
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=2.7e-05 Score=76.22 Aligned_cols=62 Identities=27% Similarity=0.284 Sum_probs=36.6
Q ss_pred cCCCCccEEEecCCCCCCCc---cccccccCCCEEEeccccCCCcccccCCC--CCcEEEeeCCCCC
Q 005834 565 DGTEGLRVLNFTGIHFSSLP---SSLGRLINLQTLCLEYCRLKDIVIVGQLK--KLEILSFRGSDIE 626 (675)
Q Consensus 565 ~~l~~L~~L~l~~~~~~~lp---~~i~~L~~L~~L~l~~~~l~~~~~i~~l~--~L~~L~l~~~~i~ 626 (675)
.+++.|+.|+|++|.++.++ ..++.+++|++|+|++|.++....+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 34566777777777666433 34456666666666666666544444444 5666666666554
No 204
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.79 E-value=0.00013 Score=83.34 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=86.4
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CC---Ce-EEEEEeCCCCCHHHHHHHH
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK-LF---DK-VAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~-~~wv~vs~~~~~~~~~~~i 231 (675)
....++||+++++.+...+......-+.++|.+|+|||++|+.+++...... .+ ++ .+.+..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 3557899999999999999766666788999999999999999999863221 01 11 111211
Q ss_pred HHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchhH----
Q 005834 232 ASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQDL---- 307 (675)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v---- 307 (675)
+.... .........+.+.....++.+|++|. ..+..+.+...+ .....++|.||.....
T Consensus 245 ----g~~~~--G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l---------~~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 ----GTKYR--GEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL---------ARGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT---------TSSSCEEEEECCTTTTHHHH
T ss_pred ----ccccc--chHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH---------hcCCEEEEeCCChHHHHHHh
Confidence 10000 01112233344444444678999992 111111122111 2334566666654431
Q ss_pred --HhhhcCCcceEecCCCCHHHHHHHHHHHhC
Q 005834 308 --LRNVMNSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 308 --a~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
..........+.+++.+.++..+++.....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 111112335799999999999999987654
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=2.2e-05 Score=72.55 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc
Q 005834 164 RKKVFQDVLEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE 240 (675)
Q Consensus 164 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (675)
.++.++.+.+++.+ .....+.|+|++|+||||||+.+++.......+. ++++ +..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 45555555555542 3357899999999999999999999875322222 2333 344555555443321111
Q ss_pred cCcCHHHHHHHHHHHHhccCeEEEEecCccc
Q 005834 241 LNESIFDRANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
. .+.+.+. +.-+|||||++.
T Consensus 92 ---~------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 92 ---T------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp ---S------HHHHHHH--TCSEEEEETCSS
T ss_pred ---H------HHHHHhc--CCCEEEEeCCCC
Confidence 0 2233333 457999999973
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=0.00036 Score=79.85 Aligned_cols=166 Identities=16% Similarity=0.257 Sum_probs=94.5
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCC----CCeEEE-EEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKL----FDKVAM-AEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~ 230 (675)
.....++||+.+++.+.+.|......-+.|+|.+|+|||++|+.+++....... ..+.+| +..+.-.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~-------- 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-------- 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh--------
Confidence 345578999999999999998666677899999999999999999987643211 233332 2111100
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccc---cCCCCccccccccCCCCeEEEEeccchhH
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEV---GIPSGDVKKERMDDQRRCTIILTSRRQDL 307 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~---~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 307 (675)
.+. ............+.+.+...++.+|++|++.....-..- ......++...+ ...+..+|.+|.....
T Consensus 255 ----~~~--~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 255 ----AGT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SSGKIRVIGSTTYQEF 327 (758)
T ss_dssp ----CCC--CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SSCCCEEEEEECHHHH
T ss_pred ----ccc--cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hCCCeEEEEEeCchHH
Confidence 000 112233444555555565446799999999654100000 000000011111 2234566666654432
Q ss_pred H------hhhcCCcceEecCCCCHHHHHHHHHHHh
Q 005834 308 L------RNVMNSQKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 308 a------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
. .........+.+++.+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1 0011223478999999999998887654
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=3.4e-05 Score=75.55 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=65.3
Q ss_pred ccccCCCEEEeccccCCCcc----cccCCCCCcEEEeeCCCCCccchhhcCCC--CCCEecCcCcccCcccc------hh
Q 005834 588 GRLINLQTLCLEYCRLKDIV----IVGQLKKLEILSFRGSDIERLPLEFGQLT--RLQLLDLSNCRRLEVIT------PN 655 (675)
Q Consensus 588 ~~L~~L~~L~l~~~~l~~~~----~i~~l~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp------~~ 655 (675)
.++++|+.|+|++|++..+. .++.+++|++|+|++|.++.+. .+..+. +|+.|++++|+-...+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56889999999999988733 4568999999999999999873 355555 99999999998545555 23
Q ss_pred hhhccCCccCEEeCcCC
Q 005834 656 VICQSWLHLEVFGMAAS 672 (675)
Q Consensus 656 ~~~~~L~~L~~L~l~~c 672 (675)
++. .+++|+.|+=...
T Consensus 246 il~-~~P~L~~LDg~~v 261 (267)
T 3rw6_A 246 IRE-RFPKLLRLDGHEL 261 (267)
T ss_dssp HHH-HCTTCCEESSCBC
T ss_pred HHH-HCcccCeECCcCC
Confidence 455 7999999985543
No 208
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=9.3e-05 Score=69.63 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhccC----CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCc
Q 005834 164 RKKVFQDVLEALKDD----KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKF 239 (675)
Q Consensus 164 r~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (675)
+...++.+.+++... ..+.+.|+|.+|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 344555666665532 12789999999999999999999987643 3446666543 444444432211
Q ss_pred ccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 240 ELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
... ..+.+.+.. .-+|||||++..
T Consensus 104 ---~~~----~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 104 ---QTM----NEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp ---CCC----HHHHHHHHH--SSEEEEEEECCC
T ss_pred ---chH----HHHHHHhcC--CCEEEEcCCCCC
Confidence 111 122333432 249999999653
No 209
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.74 E-value=2.8e-05 Score=80.18 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=85.5
Q ss_pred cCCCeEEecCCCCCccCCCCcCCCccceeEeccccCcccccchhh-hcCCCCccEEEecCC--C------CCCCcccc--
Q 005834 519 QEGPIAISLPYRGIQVLPERLQCPRLELLLLLEKGGGSMPISDHF-FDGTEGLRVLNFTGI--H------FSSLPSSL-- 587 (675)
Q Consensus 519 ~~~~~~lsl~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~--~------~~~lp~~i-- 587 (675)
...++.|.+.++.-..++. ..+++|+.|.+..+....... ..+ ...+++|+.|+|+.+ . +..+...+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-KPRPNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-CBCTTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceecc-ccCCCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 3578888887763223444 358899999996544322111 111 236899999998531 1 21222222
Q ss_pred ccccCCCEEEeccccCCC--ccc---ccCCCCCcEEEeeCCCCCc-----cchhhcCCCCCCEecCcCcc
Q 005834 588 GRLINLQTLCLEYCRLKD--IVI---VGQLKKLEILSFRGSDIER-----LPLEFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 588 ~~L~~L~~L~l~~~~l~~--~~~---i~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~ 647 (675)
..+++|++|+|++|.+.. +.. .+.+++|++|+|+.|.+.. ++..+.++++|+.|++++|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 357899999999998765 222 2468899999999998874 56566788999999999886
No 210
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=0.00011 Score=73.75 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhcc--CCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCc
Q 005834 163 SRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTED--KLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKF 239 (675)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 239 (675)
|-++.++.+.+.+..++.+...++|++|+||||+|+.+.+..... .+.+ ..++..+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 344556677777776667789999999999999999998753211 2233 34555443 3333333 33444443221
Q ss_pred ccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCccccccccCCCCeEEEEeccc-hhHHhhhcCCcc
Q 005834 240 ELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGDVKKERMDDQRRCTIILTSRR-QDLLRNVMNSQK 316 (675)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~va~~~~~~~~ 316 (675)
. .+++-++|+|++.... ..+.+...+.. ..+.+.+|++|.+ ..+.......
T Consensus 79 ~-----------------~~~~kvviIdead~lt~~a~naLLk~LEe-------p~~~t~fIl~t~~~~kl~~tI~SR-- 132 (305)
T 2gno_A 79 E-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE-------PPEYAVIVLNTRRWHYLLPTIKSR-- 132 (305)
T ss_dssp S-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS-------CCTTEEEEEEESCGGGSCHHHHTT--
T ss_pred c-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC-------CCCCeEEEEEECChHhChHHHHce--
Confidence 1 1356789999996642 22322222211 2345666665543 3343323333
Q ss_pred eEecCCCCHHHHHHHHHHHh
Q 005834 317 EIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 317 ~~~l~~L~~~e~~~Lf~~~~ 336 (675)
.+++.++++++..+.+.+.+
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999998876
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00051 Score=71.77 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=95.3
Q ss_pred cCccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP 222 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 222 (675)
..+.++.|-++.+++|.+.+. -...+-|.++|++|.|||+||+.+++..... .+.+..+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhh
Confidence 345667788888777766543 1245678999999999999999999987632 3444444321
Q ss_pred CHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccc--------c-cccCCCCcccccc--cc
Q 005834 223 DHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKF--------D-EVGIPSGDVKKER--MD 291 (675)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--------~-~~~~~~~~~~~~~--~~ 291 (675)
+ .. ..........+...-....++++++|+++....- + .....+..++... +.
T Consensus 244 ~--------------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 244 H--------------KY--LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp C--------------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred c--------------cc--cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 1 00 1112223334444444456899999998543100 0 0000000011100 12
Q ss_pred CCCCeEEEEeccchhHH-hhhcC---CcceEecCCCCH-HHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 292 DQRRCTIILTSRRQDLL-RNVMN---SQKEIQIDALSK-EEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 292 ~~~~s~ilvTtR~~~va-~~~~~---~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
...+..||.||...... ..... -...+.++.++. ++-..+|+.+.......++.. ...|++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d--l~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD--LDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC--HHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHHCCCCC
Confidence 34455667677554322 11222 224677866654 444556666654322122111 356777777753
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.71 E-value=0.0013 Score=64.28 Aligned_cols=185 Identities=14% Similarity=0.155 Sum_probs=92.5
Q ss_pred cCccccccHHHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 156 KDYEAFDSRKKVFQDVLEA---LKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.....++|.+..++++.+. +.. ...+-+.|+|.+|+||||+|+.+++..... | +.+..+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~---~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--E---EEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--E---EEEeHHHHHH
Confidence 3455678887776665543 321 123458899999999999999999876421 2 3333222111
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccc--ccccCCCC---cccccc------ccC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKF--DEVGIPSG---DVKKER------MDD 292 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~--~~~~~~~~---~~~~~~------~~~ 292 (675)
. .. ... ......+.+......+.++++|++.....- ..+..... ..+..+ ...
T Consensus 84 ~--------------~~-~~~-~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (257)
T 1lv7_A 84 M--------------FV-GVG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (257)
T ss_dssp S--------------CC-CCC-HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred H--------------hh-hhh-HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc
Confidence 0 00 011 122233333333345789999998443110 00000000 000000 012
Q ss_pred CCCeEEEEeccchhHH-hhhcC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCC-ChhHH
Q 005834 293 QRRCTIILTSRRQDLL-RNVMN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGE-LPVAL 363 (675)
Q Consensus 293 ~~~s~ilvTtR~~~va-~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai 363 (675)
..+..||.||...... ..... -...+.++..+.++-.+++..+.....-.++. ....++..+.| .+--+
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADL 221 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHH
Confidence 3455667676554321 11111 23477888888888888887776432211111 13345666666 44333
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.59 E-value=1.9e-05 Score=78.14 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=33.4
Q ss_pred ccccccHHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 158 YEAFDSRKKVFQDVLEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...++|.+..++.+.+.+. . ...+-+.|+|.+|+|||++|+.+++...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456776665555554432 1 1234478999999999999999999865
No 214
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.56 E-value=0.00041 Score=72.69 Aligned_cols=123 Identities=11% Similarity=0.117 Sum_probs=79.0
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccccCC-----C--cccccC
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCRLK-----D--IVIVGQ 611 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~-----~--~~~i~~ 611 (675)
.|++|+.+.+..+ ...+....|.+ ..|+.+.+.+ .++.+ +..+..+.+|+.+.+.++.+. . ...+..
T Consensus 224 ~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 224 KTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred CCCCCCEEecCCC---ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 4556666666321 22333344544 5566666633 34444 345677788888888777654 1 346777
Q ss_pred CCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCcCC
Q 005834 612 LKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 612 l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~c 672 (675)
+.+|+.+.|.. .++.++. .|..+++|+.+.+..+ +..++...+. ++ +|+.+++.++
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~-~~-~L~~l~l~~n 355 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN-NT-GIKEVKVEGT 355 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS-SS-CCCEEEECCS
T ss_pred CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC-CC-CCCEEEEcCC
Confidence 88888888873 4777765 4777888888888653 6777777776 66 8888888654
No 215
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.53 E-value=3.3e-05 Score=68.49 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=34.9
Q ss_pred ccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888888887764 23334578999999999999999988653
No 216
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.51 E-value=0.0003 Score=73.72 Aligned_cols=141 Identities=13% Similarity=0.214 Sum_probs=95.5
Q ss_pred CCeEEecCCCCCccCCCC-cCCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCC-----CC-ccccccccCC
Q 005834 521 GPIAISLPYRGIQVLPER-LQCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFS-----SL-PSSLGRLINL 593 (675)
Q Consensus 521 ~~~~lsl~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~l-p~~i~~L~~L 593 (675)
.++.+.+..+ +..++.. ....+|+.+.+. + ....+....|.++++|+.+++.++.+. .+ +..+..|.+|
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRESGITTVKLP-N--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTTCCCSEEEEE-T--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred CCCEEecCCC-ccCccccccccCCccEEEeC-C--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 4555555532 3333322 133678888883 2 233455666888999999999887654 34 4557888899
Q ss_pred CEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCC-ccCEEeC
Q 005834 594 QTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWL-HLEVFGM 669 (675)
Q Consensus 594 ~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~-~L~~L~l 669 (675)
+.+.+.. .++. ...+.++.+|+.+.|.. .++.++. .|..+ +|+.+++.+|. +..++...+. .++ +++.|++
T Consensus 303 ~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~-~~~~~l~~l~v 377 (401)
T 4fdw_A 303 ARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWY-GFPDDITVIRV 377 (401)
T ss_dssp CEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCC-CSCTTCCEEEE
T ss_pred CeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCC-Cccccccccc-CCCCCccEEEe
Confidence 9999884 4555 45777889999999954 4777755 57778 89999998875 5666666555 453 6777776
Q ss_pred c
Q 005834 670 A 670 (675)
Q Consensus 670 ~ 670 (675)
.
T Consensus 378 p 378 (401)
T 4fdw_A 378 P 378 (401)
T ss_dssp C
T ss_pred C
Confidence 4
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.50 E-value=0.00085 Score=71.33 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred CccccccHHHHHHHHHHH---hcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQDVLEA---LKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
.+.+++|.++.++++.+. +.. ...+-|.|+|++|+|||+||+.+++..... | +.++.++-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f---~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--F---FHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH
Confidence 345677888776665544 322 123458899999999999999999976532 2 33444332111
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc--cc-------CCCCcccccc--ccCC
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE--VG-------IPSGDVKKER--MDDQ 293 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~--~~-------~~~~~~~~~~--~~~~ 293 (675)
+ ..........+........+.+|++|++.....-.. .. ..+..++... +...
T Consensus 89 ----------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 000112223333333334689999999965311000 00 0000000000 0123
Q ss_pred CCeEEEEeccchhHHh-hhcC---CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 294 RRCTIILTSRRQDLLR-NVMN---SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 294 ~~s~ilvTtR~~~va~-~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
.+..||.||....... .... -...+.++..+.++-.++++.++......++.. ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 4566777776654322 1122 223788888888888888887775332222211 345788888876
No 218
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.44 E-value=0.0044 Score=63.11 Aligned_cols=182 Identities=17% Similarity=0.177 Sum_probs=94.1
Q ss_pred cCccccccHHHHHHHHHHHhcc-----CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 156 KDYEAFDSRKKVFQDVLEALKD-----DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.....++|.+..++.+...+.. .....+.++|++|+||||||+.+++..... |. ....+-.....++
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~l--- 93 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGDM--- 93 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHHH---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHHH---
Confidence 3445677888777776665542 244689999999999999999999987432 11 1111111111111
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccc--ccccccCCCCc----cc------cccc-cCCCCeE
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGEL--KFDEVGIPSGD----VK------KERM-DDQRRCT 297 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~--~~~~~~~~~~~----~~------~~~~-~~~~~s~ 297 (675)
..+...+. ++.++++|++.... ..+.+...... ++ .... .......
T Consensus 94 -------------------~~~~~~~~--~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 -------------------AAILTSLE--RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -------------------HHHHHHCC--TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -------------------HHHHHHcc--CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 11111121 23466677764331 01100000000 00 0000 0001112
Q ss_pred -EEEeccchhHHhhhcC-CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHHH
Q 005834 298 -IILTSRRQDLLRNVMN-SQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITLA 367 (675)
Q Consensus 298 -ilvTtR~~~va~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 367 (675)
+..|++...+...... ....+.+++.+.++-.+++.+.+... ....-.+.+..|++.+.|.|-.+..+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~-~~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-DVEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-TCCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 2234544333211111 22368899999999999998876421 122335678999999999996554443
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.44 E-value=0.00098 Score=71.43 Aligned_cols=175 Identities=12% Similarity=0.166 Sum_probs=96.6
Q ss_pred CccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+..++|.+..++++.+++. ....+-|.|+|.+|+|||++|+.+++.... ..+.++.+
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~---- 272 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGP---- 272 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHH----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEch----
Confidence 34567899998888887764 134567899999999999999999887531 22333321
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc-------------cccccCCCCccccccc
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK-------------FDEVGIPSGDVKKERM 290 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~-------------~~~~~~~~~~~~~~~~ 290 (675)
+ +...+ ..........+.+....+++.+|+||++..... ...+...+.. .
T Consensus 273 --~----l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~-----~ 335 (489)
T 3hu3_A 273 --E----IMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-----L 335 (489)
T ss_dssp --H----HHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH-----S
T ss_pred --H----hhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc-----c
Confidence 1 11110 011112223333333345678999999943211 0001000000 0
Q ss_pred cCCCCeEEEEeccchhHH-hhhc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCC
Q 005834 291 DDQRRCTIILTSRRQDLL-RNVM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGEL 359 (675)
Q Consensus 291 ~~~~~s~ilvTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 359 (675)
....+..||.||...... .... .-...+.+...+.++-.++|..++.......+. ...++++.+.|.
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~ 406 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGH 406 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTC
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCC
Confidence 123455666666654221 1111 123478999999999999999887533221111 134566666664
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.37 E-value=0.001 Score=66.96 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=37.2
Q ss_pred ccccHHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|++..++.+...+.. .....+.++|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999888888776643 2355788999999999999999998874
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.30 E-value=0.00045 Score=69.73 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=59.7
Q ss_pred ccccHHHHHHHHHHHhccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.+..++.+...+... ....+.++|.+|+|||++|+.+++..... -...+.+.++....... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-H--
Confidence 3568888888877776521 13579999999999999999999987532 12345566554332211 1
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
...++......... ....+...+......+++||++...
T Consensus 93 -~~l~g~~~~~~~~~--~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 93 -SRLIGAPPGYVGYE--EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp -HHHHCCCTTSTTTT--TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HHhcCCCCcccccc--ccchHHHHHHhCCCeEEEEeChhhc
Confidence 11223221100000 0012333343334579999999654
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.24 E-value=0.00072 Score=76.19 Aligned_cols=180 Identities=13% Similarity=0.169 Sum_probs=95.7
Q ss_pred ccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 158 YEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
+.++.|-++.+++|.+.+. . ..++-|.++|++|.|||+||+.+++..... .+.|+.++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----
Confidence 4455666655555554432 1 245679999999999999999999876532 34443321
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc-ccCCC-Ccccccc---c---cCCCCe
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE-VGIPS-GDVKKER---M---DDQRRC 296 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-~~~~~-~~~~~~~---~---~~~~~s 296 (675)
+.. .. ....+.....+.+.-....+.+|++|+++....-.. -.... ..++..+ + ....+.
T Consensus 274 ------l~s----k~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 ------IMS----KL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ------HHS----SC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ------hhc----cc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 110 00 111223334444444445789999999965421000 00000 0000000 1 123344
Q ss_pred EEEEeccchhHHhhhc----CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 297 TIILTSRRQDLLRNVM----NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 297 ~ilvTtR~~~va~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
.||.||.........+ .-...+++...+.++-.++|+.+........+. ....|++++.|.-
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 5555665433221112 123578899889888888998776533222211 1457888888864
No 223
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.20 E-value=0.0029 Score=67.55 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=36.5
Q ss_pred ccccccHHHHHHHHHHH---hccC--CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 158 YEAFDSRKKVFQDVLEA---LKDD--KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~---L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...++|.++.++.+..+ +..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 45788998887755443 3333 235788999999999999999999875
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.00049 Score=61.03 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
....+.|+|..|+|||||++.+++..... .+ .++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 55789999999999999999999987642 11 256665543
No 225
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.98 E-value=0.0034 Score=68.40 Aligned_cols=46 Identities=37% Similarity=0.427 Sum_probs=34.1
Q ss_pred ccccHHHHHHHHHHHhc------cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALK------DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|-++..+.+.+.+. .....++.++|++|+||||||+.++....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35676666665544332 23456899999999999999999999874
No 226
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.87 E-value=0.023 Score=55.13 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=32.7
Q ss_pred CccccccHHHHHHHHHH---Hhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 157 DYEAFDSRKKVFQDVLE---ALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~---~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....++|.++...++.+ .+.. .-.+-+.|+|.+|+||||||+.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456776655444433 3221 1122389999999999999999998765
No 227
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.83 E-value=0.0056 Score=60.56 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=58.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-----CcCHHHHHHHHHHHH
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-----NESIFDRANRLCRVL 256 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 256 (675)
++-|.|.+|+||||||.+++.....+..=..++||+....++.. .++.++.+.+. +.+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999988776543112468999988888764 37778876431 223333313333443
Q ss_pred ---hccCeEEEEecCcccc
Q 005834 257 ---KNEERHLIILDNIWGE 272 (675)
Q Consensus 257 ---~~~k~~LlVlDdv~~~ 272 (675)
..++.-++|+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4567889999998543
No 228
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.0057 Score=58.91 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=57.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDK----LFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 246 (675)
-.++.|+|.+|+|||||+..++....... .-..++|+.....++...+. ++++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999988532211 13578899887766655443 44555554321 011222
Q ss_pred H---HHHHHHHHHhccCeEEEEecCccc
Q 005834 247 D---RANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 247 ~---~~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
+ ....+.+.+...+.-++|+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 223344555444678999999843
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.81 E-value=0.0012 Score=75.42 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=81.3
Q ss_pred cccccHHHHHHHHHHHhcc-------C--CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHH
Q 005834 159 EAFDSRKKVFQDVLEALKD-------D--KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQD 229 (675)
Q Consensus 159 ~~~~gr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 229 (675)
..++|.+..++.+...+.. . ....+.++|++|+|||++|+.+++..... -...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc----
Confidence 3477999988888877751 1 12269999999999999999999987422 2334556554322110
Q ss_pred HHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccc--cccccCCCCcc-c---cccccCCCCeEEEEecc
Q 005834 230 KLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELK--FDEVGIPSGDV-K---KERMDDQRRCTIILTSR 303 (675)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~--~~~~~~~~~~~-~---~~~~~~~~~s~ilvTtR 303 (675)
... ...+.+.+......+|+||++..... ...+...+..- + .-......+.+||+||.
T Consensus 565 ------------~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 ------------STS----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ------------CCC-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ------------ccc----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 000 01111222222345899999965421 11110000000 0 00000224567888886
Q ss_pred c-----hhH----H----hhhcCC-cceEecCCCCHHHHHHHHHHHh
Q 005834 304 R-----QDL----L----RNVMNS-QKEIQIDALSKEEALHLFQKIV 336 (675)
Q Consensus 304 ~-----~~v----a----~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~ 336 (675)
. ..+ . ...... ...+.+.+++.++-..++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 2 100 0 101122 2588999999998888876654
No 230
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.77 E-value=0.0058 Score=62.21 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (675)
-+++.|+|.+|+||||||.+++...... =..++|++....++.. .++.++...+ ...+..+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4699999999999999999999876543 2357888887777654 5666665532 12234444444444
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.+...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 44444566899999844
No 231
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.70 E-value=0.0069 Score=57.31 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=51.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCc---------ccCcCH---HH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKF---------ELNESI---FD 247 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~---~~ 247 (675)
-.++.|+|.+|+|||||+..++. .. -..++|++....++...+.. +.+.++... ...... ..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999988 21 24688888877666655543 444433311 001111 12
Q ss_pred HHHHHHHHHhccCeEEEEecCccc
Q 005834 248 RANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 248 ~~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
....+...+.. +.-++|+|.+..
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCC
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHH
Confidence 23333333322 478999999854
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.65 E-value=0.0069 Score=59.64 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=79.9
Q ss_pred CccccccHHHHHHHHHHHhc----c---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALK----D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+.++.|-++.++++.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++..++-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 34566777777777665432 0 11223999999999999999999987653 234444332111
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccccccccc--cCCCCcccccc---ccC---CCC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDEV--GIPSGDVKKER---MDD---QRR 295 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~--~~~~~~~~~~~---~~~---~~~ 295 (675)
.. ..........+.+......+.++++|++......... ..........+ +++ ...
T Consensus 83 ~~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 MY----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp ST----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hh----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 00 0001112223333322235789999999643110000 00001111111 111 223
Q ss_pred eEEEEeccchhHHhhh-c---CCcceEecCCCCHHHHHHHHHHHhC
Q 005834 296 CTIILTSRRQDLLRNV-M---NSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 296 s~ilvTtR~~~va~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
.-++.+|....+.... . .-...+.++..+.++-.++|+.+..
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 4455555554433211 1 2345778888888888888887764
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.012 Score=59.59 Aligned_cols=90 Identities=20% Similarity=0.288 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcCHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDK----LFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNESIF 246 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 246 (675)
-.++.|+|.+|+||||||.+++....... .-..++|++....++..++. ++++.++.+.. ...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46899999999999999999987653211 12468999998887777665 44566665431 011222
Q ss_pred ---HHHHHHHHHHhc-cCeEEEEecCcc
Q 005834 247 ---DRANRLCRVLKN-EERHLIILDNIW 270 (675)
Q Consensus 247 ---~~~~~l~~~l~~-~k~~LlVlDdv~ 270 (675)
+....+...+.. .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 233445555544 467899999984
No 234
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.62 E-value=0.0035 Score=59.92 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
-.++.|+|.+|+|||||++.++...... -..+.|+.... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 3689999999999999999998765432 12466666543 34444443
No 235
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.58 E-value=0.013 Score=59.74 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=57.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcC--
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDK----LFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNES-- 244 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~-- 244 (675)
-.++.|+|.+|+||||||.+++....... .-..++|++....++...+. ++++.++.+.. ...+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHH
Confidence 46899999999999999999988743211 12468999998887776654 44555655421 0111
Q ss_pred -HHHHHHHHHHHHhc--cCeEEEEecCcc
Q 005834 245 -IFDRANRLCRVLKN--EERHLIILDNIW 270 (675)
Q Consensus 245 -~~~~~~~l~~~l~~--~k~~LlVlDdv~ 270 (675)
..+....+...+.. .+.-+||+|.+.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 11233334444443 456788999874
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.57 E-value=0.0015 Score=65.02 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV--TENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKN 258 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (675)
+++.|+|++|+|||+||.+++.... ..++|+++ .+..+. - ..+.......+.+.+..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHhh
Confidence 5778999999999999999988621 13456666 322111 0 12344555566666665
Q ss_pred cCeEEEEecCccc
Q 005834 259 EERHLIILDNIWG 271 (675)
Q Consensus 259 ~k~~LlVlDdv~~ 271 (675)
.+ +||+|++..
T Consensus 183 -~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 -HR-VIVIDSLKN 193 (331)
T ss_dssp -CS-EEEEECCTT
T ss_pred -CC-EEEEecccc
Confidence 34 999999843
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.55 E-value=0.0074 Score=61.06 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccC---------CC-----CeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDK---------LF-----DKVAMAEVTENPDHQKIQDKLASDLGIKFE----- 240 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----- 240 (675)
-.++.|+|.+|+||||||.+++....... .. ..++|++....++..++.. +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46899999999999999999987632110 11 4689999888887776664 4566665431
Q ss_pred ----cCcCHH---HHHHHHHHHHhc-cCeEEEEecCcc
Q 005834 241 ----LNESIF---DRANRLCRVLKN-EERHLIILDNIW 270 (675)
Q Consensus 241 ----~~~~~~---~~~~~l~~~l~~-~k~~LlVlDdv~ 270 (675)
...+.. +....+.+.+.. .+.-+||+|.+.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 011222 233445555554 456789999874
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.53 E-value=0.01 Score=60.54 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-----CcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-----NESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (675)
-+++.|+|.+|+||||||.+++...... =..++|++....++.. .++.++...+. ..+..+....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4689999999999999999998776533 2468899988776653 35666654321 1233333333333
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.....+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 33334567999999854
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.42 E-value=0.031 Score=59.65 Aligned_cols=177 Identities=17% Similarity=0.193 Sum_probs=89.3
Q ss_pred CccccccHHHHHHHHHHH---hccC---------CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 157 DYEAFDSRKKVFQDVLEA---LKDD---------KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
.+.+++|.++.+.++.+. +... -.+-+.|+|.+|+||||||+.++..... ..+.++.+.-.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh
Confidence 455677887766555443 3221 1234899999999999999999987652 2344443321110
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhc---cCeEEEEecCccccccccc--cc-------CCCCcccccccc-
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKN---EERHLIILDNIWGELKFDE--VG-------IPSGDVKKERMD- 291 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~---~k~~LlVlDdv~~~~~~~~--~~-------~~~~~~~~~~~~- 291 (675)
........+...+.. ..+.++++|++.....-.. .. ..+..++.. ++
T Consensus 104 -------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~-Ldg 163 (499)
T 2dhr_A 104 -------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE-MDG 163 (499)
T ss_dssp -------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH-GGG
T ss_pred -------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH-hcc
Confidence 000111122222222 2358999999954311000 00 000000100 11
Q ss_pred --CCCCeEEEEeccchhHHhh-hc---CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCCh
Q 005834 292 --DQRRCTIILTSRRQDLLRN-VM---NSQKEIQIDALSKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELP 360 (675)
Q Consensus 292 --~~~~s~ilvTtR~~~va~~-~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 360 (675)
...+..|+.||........ .. .-...+.+...+.++-.+++..++....-.++. ....|+..+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 1223445555555443221 11 123478888888888888888776432111111 1345677777765
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.41 E-value=0.0053 Score=70.11 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 160 AFDSRKKVFQDVLEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
.++|.+..++.+...+.. .....+.++|.+|+|||++|+.+.+... ...+.++++.-.... .
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----~ 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----T 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----C
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----h
Confidence 467888888887776641 1223789999999999999999998873 234455555432210 0
Q ss_pred HHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 231 LASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
+.+.++.+.. ....+....+.+.+......+|+||++...
T Consensus 530 ~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0011121110 000111122334444345689999999654
No 241
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.40 E-value=0.014 Score=59.87 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=56.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (675)
-.++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.. ...+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4689999999999999999998876533 2468999998776654 2556665432 12233444444444
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.....+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 44434556999999843
No 242
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.31 E-value=0.015 Score=59.33 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=54.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-----CcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-----NESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (675)
-+++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++...+. ..+..+....+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4689999999999999999998876543 2368899998777644 24556654321 1123333333322
Q ss_pred HHhccCeEEEEecCccc
Q 005834 255 VLKNEERHLIILDNIWG 271 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~~ 271 (675)
.....+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 22233456999999843
No 243
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.25 E-value=0.003 Score=63.03 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999885
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.19 E-value=0.0083 Score=60.19 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHhccC---CccEEEEEcCCCCcHHHHHHHHHHHhh-ccCCCCeEEEEEe
Q 005834 163 SRKKVFQDVLEALKDD---KLNIIGVYGMGGVGKTTLVKQVAKQVT-EDKLFDKVAMAEV 218 (675)
Q Consensus 163 gr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v 218 (675)
++...++.+.+++... ....+.|+|.+|+|||+||+.+++... .+ -..+.++++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 3444555555666531 246889999999999999999999876 43 223555554
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.16 E-value=0.0073 Score=69.02 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=83.8
Q ss_pred CccccccHHHHHHHHHHHhcc-------------CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 157 DYEAFDSRKKVFQDVLEALKD-------------DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
.+..++|.++.++++.+++.. .....|.|+|.+|+||||||+.+++..... | +.+..+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~---i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--F---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--E---EEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--E---EEEEchH---
Confidence 345678888777777766531 234579999999999999999998865421 2 3333211
Q ss_pred HHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCccccccccc-----ccCCCCccccccc---cCCCC
Q 005834 224 HQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGELKFDE-----VGIPSGDVKKERM---DDQRR 295 (675)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~-----~~~~~~~~~~~~~---~~~~~ 295 (675)
+. ... ..........+.+......+.++++|++.....-.. +.......+..++ ....+
T Consensus 274 -------l~----~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 -------IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -------HS----SSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -------hh----hhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 10 000 111122233333333333678999999954311000 0000000000001 12234
Q ss_pred eEEEEeccchhHHhhhc----CCcceEecCCCCHHHHHHHHHHHhC
Q 005834 296 CTIILTSRRQDLLRNVM----NSQKEIQIDALSKEEALHLFQKIVG 337 (675)
Q Consensus 296 s~ilvTtR~~~va~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 337 (675)
..+|.||.......... .-...+.+...+.++-.+++..++.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 45566665532211111 1224678888899999999987765
No 246
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.15 E-value=0.02 Score=59.43 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=56.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcCH-
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED----KLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNESI- 245 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 245 (675)
-.++.|+|.+|+|||||+..++-..... ..-..++|++....++...+ ..+++.++.... .....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 4699999999999999999876433211 12356889988776666554 346677765421 01111
Q ss_pred --HHHHHHHHHHHhccCeEEEEecCccc
Q 005834 246 --FDRANRLCRVLKNEERHLIILDNIWG 271 (675)
Q Consensus 246 --~~~~~~l~~~l~~~k~~LlVlDdv~~ 271 (675)
.+....+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12333344444444678999998743
No 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.07 E-value=0.024 Score=55.94 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=34.0
Q ss_pred cCccccccHHHHHHHHHHHhc---c---------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 156 KDYEAFDSRKKVFQDVLEALK---D---------DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.....++|.++..+++.+... . .-.+-+.|+|.+|+||||||+.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 345567787766555443322 1 0112389999999999999999998765
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.02 E-value=0.26 Score=51.66 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCccc---CcCHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFEL---NESIFDRANRLCR 254 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 254 (675)
..++|.++|.+|+||||++..++.....+... .+.-+.... .....+.+.......+.+.-. ..+..+.......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999887754122 344444432 223333333444455543221 1233333344444
Q ss_pred HHhccCeEEEEecCc
Q 005834 255 VLKNEERHLIILDNI 269 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv 269 (675)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 444212225666764
No 249
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.01 E-value=0.032 Score=52.98 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=53.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc---C-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcCH-
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED---K-LFDKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNESI- 245 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 245 (675)
-.+++|+|..|+|||||++.++...... . .-..++|+.-........ ...+.+..+.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3699999999999999999998754321 1 134588887665444433 3344444443321 01111
Q ss_pred --HHHHHHHHHHHh-----ccCeEEEEecCccc
Q 005834 246 --FDRANRLCRVLK-----NEERHLIILDNIWG 271 (675)
Q Consensus 246 --~~~~~~l~~~l~-----~~k~~LlVlDdv~~ 271 (675)
......+...+. ..++-++|+|....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 111233344443 44678999998744
No 250
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.026 Score=56.05 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=48.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLK 257 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (675)
...+++++|.+|+||||++..++.....+.. ..+..+.... .....+.+....+..+.+.....+..+....+. .+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hhc
Confidence 4579999999999999999999987764211 2344554432 223334444444445544321222233322232 332
Q ss_pred ccCeEEEEecC
Q 005834 258 NEERHLIILDN 268 (675)
Q Consensus 258 ~~k~~LlVlDd 268 (675)
+.=++|+|-
T Consensus 182 --~~dlvIiDT 190 (296)
T 2px0_A 182 --EYDHVFVDT 190 (296)
T ss_dssp --GSSEEEEEC
T ss_pred --CCCEEEEeC
Confidence 345788883
No 251
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.94 E-value=0.0081 Score=56.12 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHhcc---CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 163 SRKKVFQDVLEALKD---DKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 163 gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.|++.++.+.+.+.. ....+|+|.|..|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 466677778777763 34579999999999999999999887643
No 252
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.89 E-value=0.092 Score=66.91 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=49.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEE 260 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (675)
+-+.++|++|.|||++|+.+..... .+ ..+.++.+...+...+++.+-..+......... +...-..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 5678999999999999987766532 12 456788888888877777666655422100000 000000257
Q ss_pred eEEEEecCcc
Q 005834 261 RHLIILDNIW 270 (675)
Q Consensus 261 ~~LlVlDdv~ 270 (675)
+.++.+||+.
T Consensus 1337 ~~VlFiDEin 1346 (2695)
T 4akg_A 1337 NLVLFCDEIN 1346 (2695)
T ss_dssp CEEEEEETTT
T ss_pred eEEEEecccc
Confidence 8899999974
No 253
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.82 E-value=0.0093 Score=60.57 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHHhc-cCCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCC---cccCc
Q 005834 170 DVLEALK-DDKLNIIGVYGMGGVGKTTLVKQVAKQVTED-KLFDKVAMAEVTENPD-HQKIQDKLASDLGIK---FELNE 243 (675)
Q Consensus 170 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~---~~~~~ 243 (675)
++++.+. -..-..++|+|.+|+|||||++.+.+....+ ..++ ++++-+.+... ..++ .+.+... .....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~----~~~~~~~vV~atade 237 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEM----QRLVKGEVVASTFDE 237 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHH----HTTCSSEEEEECTTS
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHH----HHHhCeEEEEeCCCC
Confidence 3445544 2345689999999999999999998876432 1233 34577776542 2222 2332110 00011
Q ss_pred CHHH------HHHHHHHHHh-ccCeEEEEecCcccc
Q 005834 244 SIFD------RANRLCRVLK-NEERHLIILDNIWGE 272 (675)
Q Consensus 244 ~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~~ 272 (675)
.... ..-.+.+++. .++..||++||+...
T Consensus 238 p~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 238 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 1111 1112334443 478999999999543
No 254
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.73 E-value=0.23 Score=51.74 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=47.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC--HHHHHHHHHHHhCCCccc---CcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD--HQKIQDKLASDLGIKFEL---NESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 253 (675)
...+|.++|.+|+||||++..++.....++ . .+..++.. .+. ..+-+....+..+.+... ..+.........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D-~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAAD-VYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEEC-CSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecC-ccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 467999999999999999999998876532 2 34444432 232 233344444555553321 112222333333
Q ss_pred HHHhccCeEEEEecCc
Q 005834 254 RVLKNEERHLIILDNI 269 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv 269 (675)
..+.....=++|+|-.
T Consensus 173 ~~a~~~~~DvvIIDTa 188 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTA 188 (433)
T ss_dssp HHTTTTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 3333223345667755
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.69 E-value=0.012 Score=55.38 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcc--CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC
Q 005834 165 KKVFQDVLEALKD--DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT 219 (675)
Q Consensus 165 ~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 219 (675)
++.+++|.+.+.. ....+|+|+|..|+|||||++.+.......+ ....+|...
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 3455666666653 4567999999999999999999988776421 124455543
No 256
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.62 E-value=0.0028 Score=55.67 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=32.3
Q ss_pred ccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 160 AFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.++|+...++++.+.+. .....-|.|+|.+|+|||++|+.+.+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45688888777777664 1233457799999999999999987654
No 257
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.57 E-value=0.094 Score=53.35 Aligned_cols=163 Identities=9% Similarity=-0.005 Sum_probs=96.2
Q ss_pred HhccCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcccCcCHHHHHHHHH
Q 005834 174 ALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFELNESIFDRANRLC 253 (675)
Q Consensus 174 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 253 (675)
.+...-.++..++|..|.||++.++.+.+..... .|+....+.+....++.++...+..
T Consensus 12 ~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 70 (343)
T 1jr3_D 12 QLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------- 70 (343)
T ss_dssp HHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH--------------------
T ss_pred HHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC--------------------
Confidence 3333446789999999999999999998876432 2543222333333444443322210
Q ss_pred HHHhccCeEEEEecCccc-c--cccccccCCCCccccccccCCCCeEEEEeccc-------hhHHhhhcCCcceEecCCC
Q 005834 254 RVLKNEERHLIILDNIWG-E--LKFDEVGIPSGDVKKERMDDQRRCTIILTSRR-------QDLLRNVMNSQKEIQIDAL 323 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~~-~--~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~-------~~va~~~~~~~~~~~l~~L 323 (675)
..+. +++-++|+|++.. . ..++.+...+.. -.+++.+|++|.. ..+..........++..++
T Consensus 71 ~plf-~~~kvvii~~~~~kl~~~~~~aLl~~le~-------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 71 MSLF-ASRQTLLLLLPENGPNAAINEQLLTLTGL-------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp HHHC-CSCEEEEEECCSSCCCTTHHHHHHHHHTT-------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred cCCc-cCCeEEEEECCCCCCChHHHHHHHHHHhc-------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 1122 3567888999855 2 333333222221 2346666665532 2343433455678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHhCCChhHHHHH
Q 005834 324 SKEEALHLFQKIVGDSMKTSAFQPIAHEIVGRCGELPVALITL 366 (675)
Q Consensus 324 ~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 366 (675)
+.++....+.+.+.... ..--++.+..+++.++|.+..+...
T Consensus 143 ~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLN-LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CTTHHHHHHHHHHHHTT-CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 99999888887764221 1122457888999999988766553
No 258
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.54 E-value=0.052 Score=54.55 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=39.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
-.++.|.|.+|+||||||..++.....++ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999988766443 578887765 4666777666654
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.52 E-value=0.074 Score=55.55 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877643
No 260
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.52 E-value=0.023 Score=59.63 Aligned_cols=90 Identities=19% Similarity=0.344 Sum_probs=53.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCC--------CcccCcCHHH----
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGI--------KFELNESIFD---- 247 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~~---- 247 (675)
+.++|+|.+|+|||||++.+......+. -+.++++.+.+.. ...++..++...-.. ..........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999988765432 2445667776654 345555555432100 0000111111
Q ss_pred HHHHHHHHHh--ccCeEEEEecCccc
Q 005834 248 RANRLCRVLK--NEERHLIILDNIWG 271 (675)
Q Consensus 248 ~~~~l~~~l~--~~k~~LlVlDdv~~ 271 (675)
..-.+.+++. .+++.|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1224455554 37899999999843
No 261
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.47 E-value=0.017 Score=49.64 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=39.8
Q ss_pred CEEEeccccCC--C-cccccCCCCCcEEEeeCCCCCccchh-hcCCCCCCEecCcCcc
Q 005834 594 QTLCLEYCRLK--D-IVIVGQLKKLEILSFRGSDIERLPLE-FGQLTRLQLLDLSNCR 647 (675)
Q Consensus 594 ~~L~l~~~~l~--~-~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 647 (675)
..++.+++.++ . |..+. .+|++|+|++|.|+.+|.. +..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777777776 5 43332 4689999999999999875 6778899999999876
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.38 E-value=0.022 Score=65.87 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=36.5
Q ss_pred ccccHHHHHHHHHHHhcc---------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALKD---------DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.+..++.+...+.. .....+.|+|.+|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999888888777641 1124789999999999999999998874
No 263
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.35 E-value=0.067 Score=51.30 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDK 230 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 230 (675)
-.++.|.|.+|+||||||.+++...... =..++|++... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH
Confidence 3589999999999999998887765432 23577877654 34444433
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.34 E-value=0.028 Score=63.41 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=58.0
Q ss_pred ccccccHHHHHHHHHHHhc-------------cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCH
Q 005834 158 YEAFDSRKKVFQDVLEALK-------------DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDH 224 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 224 (675)
...+.|-++..++|.+.+. -...+-|.++|++|.|||.+|+.+++..... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----c
Confidence 4456677777777665543 0124567899999999999999999987632 23332 1
Q ss_pred HHHHHHHHHHhCCCcccCcCHHHHHHHHHHHHhccCeEEEEecCcccc
Q 005834 225 QKIQDKLASDLGIKFELNESIFDRANRLCRVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlVlDdv~~~ 272 (675)
.+ ++... ....+.....+.+.-+...+++|++|+++..
T Consensus 545 ~~----l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 PE----LLTMW------FGESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp HH----HHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred ch----hhccc------cchHHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 11 11111 1112344555666555557899999999653
No 265
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.34 E-value=0.011 Score=57.99 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=39.1
Q ss_pred ccccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 158 YEAFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 158 ~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
+..++|+...+..+.+.+. .....-|.|+|.+|+|||++|+.+++..... -...+.++++.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 3457788888887776654 2233567899999999999999999875422 12234555554
No 266
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.34 E-value=0.031 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
-.+++|+|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.32 E-value=0.09 Score=55.02 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=64.3
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------c---
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIK------F--- 239 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~--- 239 (675)
.++.|.. .+-..++|+|.+|+|||+|++++.+.... .+-+.++++-+.+.. ...++.+++.+.=... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4555542 34568999999999999999999987642 234667888888765 4566777776542221 0
Q ss_pred ---ccCcCHH------HHHHHHHHHHhc--cCeEEEEecCccc
Q 005834 240 ---ELNESIF------DRANRLCRVLKN--EERHLIILDNIWG 271 (675)
Q Consensus 240 ---~~~~~~~------~~~~~l~~~l~~--~k~~LlVlDdv~~ 271 (675)
..+.... ...-.+.+++.. ++..|+++||+..
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0011111 123345566654 7899999999844
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.31 E-value=0.051 Score=55.39 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhcc---CCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCcc---------cCcC-
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTED---KLF-DKVAMAEVTENPDHQKIQDKLASDLGIKFE---------LNES- 244 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~- 244 (675)
.-.++.|+|.+|+|||||+..++...... +.. ..++|++....+....+ ..+++..+.... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34699999999999999999998875211 111 24589987766544443 345555543211 0011
Q ss_pred --HHHHHHHHHHHHhc-----cCeEEEEecCccc
Q 005834 245 --IFDRANRLCRVLKN-----EERHLIILDNIWG 271 (675)
Q Consensus 245 --~~~~~~~l~~~l~~-----~k~~LlVlDdv~~ 271 (675)
..+....+...+.. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 11223333333432 3678999998844
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.29 E-value=0.011 Score=53.73 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999998764
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.24 E-value=0.011 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988764
No 271
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.16 E-value=0.07 Score=56.08 Aligned_cols=100 Identities=22% Similarity=0.353 Sum_probs=65.6
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC--------c-
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLASDLGIK--------F- 239 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~--------~- 239 (675)
.++.|.. .+-..++|+|.+|+|||+|++++.+.... .+-+.++++-+.+.. ...++.+++...=... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 4444542 34467899999999999999999987643 235778888888776 4567777776542221 0
Q ss_pred ----ccCcC------HHHHHHHHHHHHhc--cCeEEEEecCccc
Q 005834 240 ----ELNES------IFDRANRLCRVLKN--EERHLIILDNIWG 271 (675)
Q Consensus 240 ----~~~~~------~~~~~~~l~~~l~~--~k~~LlVlDdv~~ 271 (675)
..+.. .....-.+.+++.. ++..|+++||+..
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00111 11233455677765 7899999999843
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.15 E-value=0.013 Score=54.50 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|.|+|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 273
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.13 E-value=0.021 Score=54.17 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 167 VFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 167 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+.+...+......+|.|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344444444455678999999999999999999998764
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.12 E-value=0.012 Score=53.27 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQV 200 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v 200 (675)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 275
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.10 E-value=0.011 Score=60.33 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=36.3
Q ss_pred cCccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 156 KDYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 156 ~~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+..++|.+..+..+..........-+.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556889887666544444333334489999999999999999998764
No 276
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.99 E-value=0.081 Score=54.61 Aligned_cols=111 Identities=13% Similarity=0.249 Sum_probs=64.0
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCEEEeccccCCC--cccccCCCCCc
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLE 616 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~ 616 (675)
.+.+|+.+.+..+ ...+....|.++..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+.++. ...+.++.+|+
T Consensus 238 ~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 238 GMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred CCccceEEEcCCC---ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 4566666666322 22333444666667777766543 44443 235666777777777666655 34566777777
Q ss_pred EEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhh
Q 005834 617 ILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVI 657 (675)
Q Consensus 617 ~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~ 657 (675)
.+.|.. .++.++. .|.++.+|+.+.+..+ +..+....+
T Consensus 314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF 352 (379)
T 4h09_A 314 SVTLPT-ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAF 352 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTT
T ss_pred EEEcCc-cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHh
Confidence 777753 3666654 4666777777766542 444444443
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.96 E-value=0.014 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 278
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.95 E-value=0.039 Score=55.85 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=36.8
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|+++.++.+...+..+ .-+.++|.+|+|||+||+.+.+...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5679999888888777653 3688999999999999999998764
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.93 E-value=0.016 Score=53.07 Aligned_cols=26 Identities=38% Similarity=0.468 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999999998764
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.91 E-value=0.015 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.89 E-value=0.032 Score=56.33 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHhc----cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 163 SRKKVFQDVLEALK----DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 163 gr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+-+...+.+++.+. .+....|.|+|+.|+||||+++.++....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44455555555543 45566799999999999999999988765
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.87 E-value=0.014 Score=52.72 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.87 E-value=0.018 Score=53.67 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998876
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.84 E-value=0.016 Score=53.00 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.84 E-value=0.019 Score=53.51 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.....+|+|+|+.|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998875
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.80 E-value=0.075 Score=65.45 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=59.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 253 (675)
..++|.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.+.+ .....+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999999998876543 34678888888777665 556664321 1223334444444
Q ss_pred HHHhccCeEEEEecCcc
Q 005834 254 RVLKNEERHLIILDNIW 270 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~ 270 (675)
......+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 45455577899999984
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.80 E-value=0.022 Score=53.79 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 164 RKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 164 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++..+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 334445555555455678999999999999999999988764
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.78 E-value=0.02 Score=52.83 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988763
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.75 E-value=0.016 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988763
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.70 E-value=0.14 Score=51.56 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=37.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASD 234 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 234 (675)
-.++.|.|.+|+||||||..++...... =..++|++. ..+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3589999999999999999998887642 245677665 44666777666543
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.69 E-value=0.2 Score=49.60 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCccc---CcCHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN-PDHQKIQDKLASDLGIKFEL---NESIFDRANRLCRV 255 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 255 (675)
..+++++|.+|+||||++..++...... -..+.++..... ....+.+....+..+.+.-. ..+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999887643 224555554322 22233344555666654321 12334444444455
Q ss_pred HhccCeEEEEecCc
Q 005834 256 LKNEERHLIILDNI 269 (675)
Q Consensus 256 l~~~k~~LlVlDdv 269 (675)
+....-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54212236777864
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.69 E-value=0.019 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999876
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.68 E-value=0.13 Score=50.87 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCccc---CcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQ--KIQDKLASDLGIKFEL---NESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 253 (675)
...+++|+|.+|+||||++..++...... -..+.++... ..... ..+..+.+..+.+.-. ..+..+......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999999999887643 1234455442 22222 2233445555554321 123334433333
Q ss_pred HHHhccCeEEEEecCc
Q 005834 254 RVLKNEERHLIILDNI 269 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv 269 (675)
..+...+.=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3332123457788865
No 294
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.66 E-value=0.076 Score=52.88 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=49.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHH--HHHHHHHHHhCCCcccC---cCHHHH-HHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQ--KIQDKLASDLGIKFELN---ESIFDR-ANRL 252 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~---~~~~~~-~~~l 252 (675)
...+|.|+|.+|+||||++..++...... -..+.++.. +.+... +-+...++..+.+.-.. .+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999999887643 123445543 333322 22344555555543111 122222 2234
Q ss_pred HHHHhccCeEEEEecCc
Q 005834 253 CRVLKNEERHLIILDNI 269 (675)
Q Consensus 253 ~~~l~~~k~~LlVlDdv 269 (675)
...+.. +.-++|+|-.
T Consensus 180 ~~a~~~-~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTA 195 (306)
T ss_dssp HHHHHT-TCSEEEEEEC
T ss_pred HHHHhc-CCCEEEEECC
Confidence 444443 3447888865
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.66 E-value=0.019 Score=52.33 Aligned_cols=26 Identities=46% Similarity=0.492 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.|.|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988764
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.62 E-value=0.025 Score=50.75 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..+++.|+|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4679999999999999999999988764
No 297
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.59 E-value=0.021 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|++|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 298
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.58 E-value=0.041 Score=54.42 Aligned_cols=55 Identities=20% Similarity=0.066 Sum_probs=34.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccC-CCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDK-LFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
....+|+|+|..|+||||||+.+........ ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4567999999999999999999988765421 022344435443333334444443
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.55 E-value=0.023 Score=51.12 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998765
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.52 E-value=0.025 Score=51.84 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+|.|.|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999988764
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.48 E-value=0.021 Score=51.87 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 302
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.44 E-value=0.037 Score=54.74 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 303
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.43 E-value=0.027 Score=52.02 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|.|.|+.|+||||+|+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999988764
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.42 E-value=0.028 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.40 E-value=0.023 Score=53.14 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.39 E-value=0.026 Score=52.92 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999988754
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.38 E-value=0.025 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988653
No 308
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.37 E-value=0.026 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.37 E-value=0.025 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 310
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.33 E-value=0.36 Score=51.48 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..++|+|+|.+|+||||++..++.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4569999999999999999999987764
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.33 E-value=0.025 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 312
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.33 E-value=0.031 Score=55.92 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=35.9
Q ss_pred ccccHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 46788888888777665 23345678999999999999999998653
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.30 E-value=0.027 Score=52.34 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.30 E-value=0.03 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.29 E-value=0.023 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 316
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.28 E-value=0.03 Score=52.71 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+.++|.|.|++|+||||.|+.+++...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998875
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.28 E-value=0.023 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.27 E-value=0.03 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|.|+.|+||||+|+.+.+...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987653
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.26 E-value=0.025 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.23 E-value=0.03 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 321
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.21 E-value=0.028 Score=52.73 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|+|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988754
No 322
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.20 E-value=0.18 Score=52.28 Aligned_cols=102 Identities=19% Similarity=0.343 Sum_probs=66.4
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCc-cccccccCCCEEEeccccCCC--cccccCCCCCc
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLP-SSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLE 616 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~ 616 (675)
.|++|+++.+..+ ...+....|.++..|+.+.+.. .++.++ ..+.++.+|+.+.|..+ ++. ...+.++.+|+
T Consensus 263 ~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 263 SCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccEEecccc---cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 5677777777322 2234445577778888887753 355554 34667788888887654 333 34667778888
Q ss_pred EEEeeCCCCCccch-hhcCCCCCCEecCcCcc
Q 005834 617 ILSFRGSDIERLPL-EFGQLTRLQLLDLSNCR 647 (675)
Q Consensus 617 ~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 647 (675)
.+.+.. .++.++. .|.++.+|+.+++.++.
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 888854 4667755 57778888888877643
No 323
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.19 E-value=0.045 Score=56.26 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHhc-------------c--CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 161 FDSRKKVFQDVLEALK-------------D--DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 161 ~~gr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
++|.+..++.+...+. . ...+.+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888777762 1 1345789999999999999999998874
No 324
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.16 E-value=0.25 Score=51.14 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=61.8
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCcE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEI 617 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~ 617 (675)
.+.+|+.+.+..+. ..+....|..+..+..+.+....+.. ..+..+.+|+.+.+..+ ++. ...+.++.+|+.
T Consensus 251 ~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCc---ceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 45566666553221 12222334555555555554432211 12445556666666443 322 234556666666
Q ss_pred EEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeC
Q 005834 618 LSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGM 669 (675)
Q Consensus 618 L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l 669 (675)
+++.. .++.++. .|..+.+|+.+.+..+ +..++...+. ++++|+.+.+
T Consensus 325 i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-~C~~L~~i~l 373 (394)
T 4fs7_A 325 IDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQ-GCINLKKVEL 373 (394)
T ss_dssp ECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBT-TCTTCCEEEE
T ss_pred EEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhh-CCCCCCEEEE
Confidence 66643 3555543 4666666666666543 5556655555 5666666655
No 325
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.15 E-value=0.032 Score=50.79 Aligned_cols=25 Identities=44% Similarity=0.618 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.++|+|..|+|||||++.++....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987653
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.15 E-value=0.031 Score=53.91 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+..+|+|+|+.|+|||||++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999997664
No 327
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.15 E-value=0.075 Score=45.47 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=24.3
Q ss_pred EEEecCCCCC--CCccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCC
Q 005834 572 VLNFTGIHFS--SLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSD 624 (675)
Q Consensus 572 ~L~l~~~~~~--~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~ 624 (675)
.++.+++.++ .+|..+. .+|++|+|++|+|+. ...+..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 4443321 245555555555554 2234455555555555553
No 328
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.13 E-value=0.028 Score=60.15 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|+++.++.+...+..+ .-|.++|.+|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4679988888887776643 4688999999999999999998764
No 329
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.12 E-value=0.031 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|+|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 330
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.10 E-value=0.027 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.09 E-value=0.033 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.+|.|.|+.|+||||+|+.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999998764
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.08 E-value=0.029 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 333
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.08 E-value=0.082 Score=48.64 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=28.5
Q ss_pred hcCCCCccEEEecCCCCC-----CCccccccccCCCEEEeccccCCC--c----ccccCCCCCcEEEeeC
Q 005834 564 FDGTEGLRVLNFTGIHFS-----SLPSSLGRLINLQTLCLEYCRLKD--I----VIVGQLKKLEILSFRG 622 (675)
Q Consensus 564 ~~~l~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~ 622 (675)
+..-+.|+.|+|++|.+. .+-..+..=+.|++|+|++|.|.. . ..+..-..|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 344455666666666554 122223333456666666665554 1 1233334455555554
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.08 E-value=0.03 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988654
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.06 E-value=0.048 Score=54.62 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhc-c---CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 163 SRKKVFQDVLEALK-D---DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 163 gr~~~~~~l~~~L~-~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
|....+..+...+. . ....+|+|.|..|+||||+++.+.....
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444444444333 2 3455999999999999999999987765
No 336
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.04 E-value=0.032 Score=54.36 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.03 E-value=0.032 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999987653
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.03 E-value=0.038 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|++|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 339
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.01 E-value=0.027 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999988653
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.00 E-value=0.068 Score=51.41 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+|.|.|++|+||||+|+.+.+...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999987753
No 341
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.98 E-value=0.034 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999988654
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.94 E-value=0.023 Score=51.83 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988754
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.94 E-value=0.032 Score=52.15 Aligned_cols=26 Identities=46% Similarity=0.663 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
...+|+|+|..|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999997753
No 344
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.93 E-value=0.056 Score=55.82 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998773
No 345
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.90 E-value=0.046 Score=52.95 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988754
No 346
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.89 E-value=0.028 Score=53.14 Aligned_cols=88 Identities=17% Similarity=0.003 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc--CcCHHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL--NESIFDRANRLCRVL 256 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l 256 (675)
.-.++.|.|..|+||||++..+.+....+ -..++.+....+. . ....+++.++..... .....+....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34688999999999999999988887644 2234444433321 1 222445555543321 112223333333333
Q ss_pred hccCeEEEEecCccc
Q 005834 257 KNEERHLIILDNIWG 271 (675)
Q Consensus 257 ~~~k~~LlVlDdv~~ 271 (675)
..++.-+||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 86 FNDETKVIGIDEVQF 100 (223)
T ss_dssp SCTTCCEEEECSGGG
T ss_pred hCCCCCEEEEecCcc
Confidence 333445999999854
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.89 E-value=0.037 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 348
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.86 E-value=0.041 Score=55.13 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=31.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
++.+||+|.|-|||||||.+..+.--....+ ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4678999999999999999999888776532 2466666653
No 349
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.86 E-value=0.039 Score=52.13 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999988764
No 350
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.84 E-value=0.04 Score=50.86 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.82 E-value=0.038 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.77 E-value=0.047 Score=54.42 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+++|+|.+|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999988764
No 353
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.77 E-value=0.042 Score=51.43 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK 212 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 212 (675)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876542 3454
No 354
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.74 E-value=0.045 Score=51.34 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK 212 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 212 (675)
..+|.|.|+.|+||||+|+.+.+..... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999887542 3444
No 355
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.73 E-value=0.3 Score=50.83 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=48.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHH--HHHHHHHHhCCCccc---CcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQK--IQDKLASDLGIKFEL---NESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 253 (675)
...+|.++|.+|+||||++..++.....+ -..+..+.. +.+.+.. .+....+..+.+.-. ..+..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 35789999999999999999999887643 123444443 3333322 234445555554211 122333333344
Q ss_pred HHHhccCeE-EEEecCc
Q 005834 254 RVLKNEERH-LIILDNI 269 (675)
Q Consensus 254 ~~l~~~k~~-LlVlDdv 269 (675)
+.++. +.| ++|+|-.
T Consensus 174 ~~~~~-~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARL-EARDLILVDTA 189 (425)
T ss_dssp HHHHH-TTCSEEEEECC
T ss_pred HHHHH-CCCCEEEEcCC
Confidence 44431 223 6666744
No 356
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.72 E-value=0.03 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVA 201 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~ 201 (675)
...+++|+|..|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.69 E-value=0.033 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.68 E-value=0.041 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999764
No 359
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.66 E-value=0.037 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4578999999999999999987754
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.66 E-value=0.041 Score=52.10 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999998765
No 361
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.65 E-value=0.027 Score=57.06 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhcc-CCCCeEEEEEeCCC
Q 005834 170 DVLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTED-KLFDKVAMAEVTEN 221 (675)
Q Consensus 170 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 221 (675)
++++.+.. ..-..++|+|.+|+|||+|++++.+....+ ..+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45666653 445688999999999999999999876532 1233 345666654
No 362
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.61 E-value=0.026 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.+|+|.|..|+||||+++.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988753
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.60 E-value=0.041 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...|.|.|+.|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999988653
No 364
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.59 E-value=0.04 Score=51.51 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346999999999999999999988653
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.56 E-value=0.048 Score=52.80 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|+|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999997764
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.56 E-value=0.043 Score=54.90 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeC
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVT 219 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 219 (675)
....+|+|+|..|+|||||++.+..-......-..+.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999998876542100235555543
No 367
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.53 E-value=0.18 Score=61.26 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 253 (675)
.-+++.|.|.+|+||||||.+++...... =..++|++....++.. .++.++.+.+ ...+..+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 34689999999999999999998876643 3468899888877754 2666776532 1223344444444
Q ss_pred HHHhccCeEEEEecCcccc
Q 005834 254 RVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~~~ 272 (675)
......+.-++|+|-+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 4343445679999998543
No 368
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.52 E-value=0.067 Score=49.02 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC---CCHHHHHHHHHHHhCCC---------cccCc----
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN---PDHQKIQDKLASDLGIK---------FELNE---- 243 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~---------~~~~~---- 243 (675)
...|-|++-.|.||||.|--..-+.-.. =..+.++.+-+. .....++. .++.. +....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHH
Confidence 4567777777899999999888776633 224555544332 23333433 33211 11010
Q ss_pred --CHHHHHHHHHHHHhccCeEEEEecCcccccccccccCCCCccccccccCCCCeEEEEeccchh
Q 005834 244 --SIFDRANRLCRVLKNEERHLIILDNIWGELKFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD 306 (675)
Q Consensus 244 --~~~~~~~~l~~~l~~~k~~LlVlDdv~~~~~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 306 (675)
..........+.+.+++-=|||||++-....+..+ +.+.++..+........||+|+|...
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l--~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL--PLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS--CHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC--CHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 01122334445555555559999998443222211 11111111112445678999999864
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.48 E-value=0.13 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.|+|.|..|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988743
No 370
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.47 E-value=0.046 Score=48.62 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..-.+++|+|..|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999999876
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.46 E-value=0.047 Score=50.36 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 372
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.46 E-value=0.22 Score=51.18 Aligned_cols=122 Identities=18% Similarity=0.182 Sum_probs=83.5
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCC-ccccccccCCCEEEeccccCCC--cccccCCCCCc
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSL-PSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLE 616 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~ 616 (675)
.+.+|+.+.+..+ ...+....|.++..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+ +.. ...+..+.+|+
T Consensus 215 ~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc---eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 5667777776322 22334455777888888888765 4444 334667778888887644 333 34567788888
Q ss_pred EEEeeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeC
Q 005834 617 ILSFRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGM 669 (675)
Q Consensus 617 ~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l 669 (675)
.+.+.++.++.++. .|.++.+|+.+.+.. .+..++...+. ++++|+.+.+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFK-NCKALSTISY 340 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCTTCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhh-CCCCCCEEEE
Confidence 88888877887765 577888888888865 26777777666 6777877766
No 373
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.44 E-value=0.042 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 374
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.42 E-value=0.098 Score=52.63 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=37.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE-NPDHQKIQDKLASDLGI 237 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 237 (675)
....+++|+|..|+||||+++.++....... ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4567999999999999999999998776531 1234443321 12334445555666664
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.41 E-value=0.049 Score=52.47 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998864
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.36 E-value=0.049 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 377
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.34 E-value=0.045 Score=49.37 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
.++++|+|..|+|||||++.+.......
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3689999999999999999998887653
No 378
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.27 E-value=0.22 Score=61.49 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCcc-----cCcCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFE-----LNESIFDRANRLC 253 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 253 (675)
.-+++.|.|.+|+||||||.+++...... =..++|++....++.. .++.++.+.+ ...+..+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34699999999999999999999887643 2468899888877654 2666766432 1234444444444
Q ss_pred HHHhccCeEEEEecCcccc
Q 005834 254 RVLKNEERHLIILDNIWGE 272 (675)
Q Consensus 254 ~~l~~~k~~LlVlDdv~~~ 272 (675)
......+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 3333445679999998543
No 379
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.24 E-value=0.079 Score=55.08 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=60.3
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCC----eEEEEEeCCCC-CHHHHHHHHHHHhCCCc-----
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFD----KVAMAEVTENP-DHQKIQDKLASDLGIKF----- 239 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~-~~~~~~~~i~~~l~~~~----- 239 (675)
.++.|.. .+-..++|.|..|+|||+|+.++.+..... -+ .++++-+.+.. ...++.+++...=....
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~--~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ 218 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVL--DSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFM 218 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCS--SCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhc--cCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEE
Confidence 4444442 233457899999999999999999886642 23 56777777654 45666666554311110
Q ss_pred -ccCcCHH------HHHHHHHHHHhc--cCeEEEEecCccc
Q 005834 240 -ELNESIF------DRANRLCRVLKN--EERHLIILDNIWG 271 (675)
Q Consensus 240 -~~~~~~~------~~~~~l~~~l~~--~k~~LlVlDdv~~ 271 (675)
..+.... .....+.+++.. ++..|+++||+..
T Consensus 219 atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 219 NLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0011111 122346677763 7899999999853
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.24 E-value=0.049 Score=50.09 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+++|+|..|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988765
No 381
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.23 E-value=0.059 Score=50.52 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988765
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.15 E-value=0.053 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998875
No 383
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.10 E-value=0.25 Score=52.32 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
-.++.|.|.+|+||||||..++....... -..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 45899999999999999999998876431 12577776543 4556666554
No 384
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.10 E-value=0.23 Score=60.35 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCccc-----CcCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKFEL-----NESIFDRANRLCR 254 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (675)
-++|-|+|+.|+||||||.++....... =..++|+...+..++.- ++.+|++.+. +...++.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4789999999999999999999776543 46688999888877653 8888887542 3344556666666
Q ss_pred HHhccCeEEEEecCcc
Q 005834 255 VLKNEERHLIILDNIW 270 (675)
Q Consensus 255 ~l~~~k~~LlVlDdv~ 270 (675)
.++.+..-++|+|-|.
T Consensus 1504 ~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHTCCSEEEESCST
T ss_pred HHHcCCCCEEEEccHH
Confidence 6676777899999984
No 385
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.09 E-value=0.054 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|++|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 386
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.03 E-value=0.07 Score=48.25 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..++++|+|..|+|||||+..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3578999999999999999999987653
No 387
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.01 E-value=0.22 Score=47.74 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKL 231 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 231 (675)
-.++.|.|.+|+|||++|.+++.....+ .-..+++++... +..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHH
Confidence 4689999999999999999876543221 123466666543 455555444
No 388
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.01 E-value=0.13 Score=52.59 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=30.0
Q ss_pred HHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 168 FQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 168 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+++.+. ..+..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444555554 456789999999999999999999877643
No 389
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.00 E-value=0.062 Score=50.73 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988754
No 390
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.98 E-value=0.088 Score=55.07 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=61.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCC--CeEEEEEeCCCC-CHHHHHHHHHHHhCCCc------c
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLF--DKVAMAEVTENP-DHQKIQDKLASDLGIKF------E 240 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~ 240 (675)
.++.|.. .+-..++|.|.+|+|||+|+.++++.....+.- +.++++-+.+.. ...++.+++...=.... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4555542 234567889999999999999999987643211 356777777654 45666666654321110 0
Q ss_pred cCcCH------HHHHHHHHHHHh--ccCeEEEEecCccc
Q 005834 241 LNESI------FDRANRLCRVLK--NEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~------~~~~~~l~~~l~--~~k~~LlVlDdv~~ 271 (675)
.+... ....-.+.+++. .++..|+++||+..
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 01111 112334566666 47999999999843
No 391
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.97 E-value=0.083 Score=48.61 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=71.9
Q ss_pred hhcCCCCccEEEecCC-CCC-----CCccccccccCCCEEEeccccCCC--c----ccccCCCCCcEEEeeCCCCC----
Q 005834 563 FFDGTEGLRVLNFTGI-HFS-----SLPSSLGRLINLQTLCLEYCRLKD--I----VIVGQLKKLEILSFRGSDIE---- 626 (675)
Q Consensus 563 ~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~L~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~---- 626 (675)
++.+-+.|+.|+|+++ .+. .+-..+..=++|+.|+|++|.+.+ - ..+..-..|++|+|+.|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3556678888999875 654 233445556789999999999876 2 23445578999999999886
Q ss_pred -ccchhhcCCCCCCEecCcCccc--Ccc-----cchhhhhccCCccCEEeCcCC
Q 005834 627 -RLPLEFGQLTRLQLLDLSNCRR--LEV-----ITPNVICQSWLHLEVFGMAAS 672 (675)
Q Consensus 627 -~lp~~i~~L~~L~~L~l~~~~~--l~~-----lp~~~~~~~L~~L~~L~l~~c 672 (675)
.+-..+..=+.|+.|+|++|.. ++. +-. .+. .-++|..|+++.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~-~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIE-ENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHH-HCSSCCEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHH-hCCCcCeEeccCC
Confidence 3444566667799999986532 221 111 222 3568888888654
No 392
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.94 E-value=0.054 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998765
No 393
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.93 E-value=0.26 Score=45.56 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
.|+|-|.-|+||||.++.+++....++ ..+++..-.......+....++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHh
Confidence 478889999999999999999887542 2334443333333444444444
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.92 E-value=0.069 Score=53.16 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+++|+|..|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999988764
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.91 E-value=0.071 Score=48.42 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 396
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.89 E-value=0.098 Score=48.23 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 168 FQDVLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 168 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+..+..++.. ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444432 2234799999999999999999998864
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.87 E-value=0.067 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 398
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.86 E-value=0.074 Score=55.64 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=35.3
Q ss_pred ccccHHHHHHHHHHHhcc--------------CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 160 AFDSRKKVFQDVLEALKD--------------DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 160 ~~~gr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467888777777655521 1345689999999999999999999875
No 399
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.85 E-value=0.12 Score=54.93 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=59.5
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC-HHHHHHHHHH----HhCCC------
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD-HQKIQDKLAS----DLGIK------ 238 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~----~l~~~------ 238 (675)
+++.|.. .+-..++|.|..|+|||+|++++.+... -+.++++-+.+..+ ..++.+++-+ ..+..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 4555542 3456899999999999999999887643 46788888887765 4555555432 11100
Q ss_pred ---cccCcCHHH------HHHHHHHHHh-ccCeEEEEecCccc
Q 005834 239 ---FELNESIFD------RANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 239 ---~~~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
...+..... ..-.+.+++. .++..||++||+..
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR 335 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSR 335 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHH
Confidence 000111111 1223445554 36899999999954
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.81 E-value=0.062 Score=50.66 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..|.|.|++|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 401
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.80 E-value=0.36 Score=50.91 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=37.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
-.++.|.|.+|+||||||..++....... =..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 35899999999999999999988776421 1357777664 456677766654
No 402
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.78 E-value=0.069 Score=49.82 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+|.|.|++|+||+|.|+.+++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998865
No 403
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.76 E-value=0.065 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.. .+++|+|..|+|||||.+.++.-..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 8999999999999999999876543
No 404
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.76 E-value=0.22 Score=52.94 Aligned_cols=44 Identities=30% Similarity=0.505 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhhcc
Q 005834 163 SRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVTED 207 (675)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 207 (675)
+..+.+..+...+.++. +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45566666776766543 489999999999999999999887654
No 405
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.76 E-value=0.2 Score=49.66 Aligned_cols=51 Identities=29% Similarity=0.292 Sum_probs=34.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLA 232 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 232 (675)
.-.+++|+|.+|+|||||++.++....... =..++|+.... +..++...+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHH
Confidence 346899999999999999999988876431 11466665432 3444444443
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.75 E-value=0.066 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.679 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAK 202 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (675)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.70 E-value=0.074 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988764
No 408
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.67 E-value=0.096 Score=54.44 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhcc--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCC-
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTED--------KLFD-KVAMAEVTENP-DHQKIQDKLASDLGIK- 238 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~- 238 (675)
.++.|.. .+-..++|.|.+|+|||+|+.++++..... .+=+ .++++-+.+.. ...++.+++...=...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 4444442 234567899999999999999999886531 1112 56677777654 4556666654421010
Q ss_pred ------cccCcCH-----HHHHHHHHHHHh--ccCeEEEEecCccc
Q 005834 239 ------FELNESI-----FDRANRLCRVLK--NEERHLIILDNIWG 271 (675)
Q Consensus 239 ------~~~~~~~-----~~~~~~l~~~l~--~~k~~LlVlDdv~~ 271 (675)
....... ....-.+.+++. .++..|+++||+..
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0101111 112334667776 37899999999853
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.67 E-value=0.067 Score=59.06 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=38.7
Q ss_pred CccccccHHHHHHHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 157 DYEAFDSRKKVFQDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 157 ~~~~~~gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....++|.+..++.+...+..+ ..+.|+|.+|+||||||+.+.....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3456789988888877777654 5889999999999999999998765
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.62 E-value=0.084 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998864
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.54 E-value=0.075 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 412
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.51 E-value=0.48 Score=50.90 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=39.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH-HhCCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS-DLGIK 238 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~-~l~~~ 238 (675)
-.++.|.|.+|+||||||.+++.....+. =..++|++... +..++...++. ..+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHHHcCCC
Confidence 46889999999999999999998876431 13577777644 56677766643 33443
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.51 E-value=0.076 Score=50.28 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988763
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.49 E-value=0.078 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
++|+|.|..|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988764
No 415
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.44 E-value=0.76 Score=47.48 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=82.8
Q ss_pred CCCccceeEeccccCcccccchhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCCcccccCCCCCcEEE
Q 005834 540 QCPRLELLLLLEKGGGSMPISDHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKDIVIVGQLKKLEILS 619 (675)
Q Consensus 540 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~~~~i~~l~~L~~L~ 619 (675)
.+.+|+.+.+... ...+....+.++..|..+.+..+...--...+..+..|+.+....+.+. -..+..+.+|+.+.
T Consensus 228 ~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 228 SKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVK 303 (394)
T ss_dssp TTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEE
T ss_pred ccCCCceEEECCC---ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec-cccccccccccccc
Confidence 3456666666321 1223334467777888888876644323445667777777776554322 23566788999999
Q ss_pred eeCCCCCccch-hhcCCCCCCEecCcCcccCcccchhhhhccCCccCEEeCc
Q 005834 620 FRGSDIERLPL-EFGQLTRLQLLDLSNCRRLEVITPNVICQSWLHLEVFGMA 670 (675)
Q Consensus 620 l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~ 670 (675)
+.. .++.++. .+..+.+|+.+++.. .+..++...+. ++++|+.+.+.
T Consensus 304 l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~lp 351 (394)
T 4fs7_A 304 LLD-SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINFP 351 (394)
T ss_dssp ECT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECCC
T ss_pred ccc-ccceechhhhcCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEEC
Confidence 865 4777765 588899999999975 37788887777 78899988874
No 416
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.43 E-value=0.078 Score=53.02 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.36 E-value=0.17 Score=48.13 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
....|.|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.33 E-value=0.079 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 419
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.31 E-value=0.049 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVA-KQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 204 (675)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 420
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.29 E-value=0.063 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||.+.++.-..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999876543
No 421
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.25 E-value=0.09 Score=53.54 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
...+++|+|..|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3469999999999999999999988764
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.24 E-value=0.16 Score=53.65 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=30.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
...+++|+|..|+|||||++.++...... .+.+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35699999999999999999999877643 3344444344444
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.22 E-value=0.1 Score=50.62 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999988765
No 424
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.21 E-value=0.075 Score=50.79 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|+.|+|||||.+.+..-..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346899999999999999999876544
No 425
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.19 E-value=0.19 Score=50.04 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.7
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCC
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTEN 221 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 221 (675)
....++|+|+|-||+||||+|..++......+ ..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 44678999999999999999999988876542 24666666543
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.14 E-value=0.062 Score=50.24 Aligned_cols=24 Identities=38% Similarity=0.293 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
-.+++|+|..|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999876
No 427
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.10 E-value=1.5 Score=56.66 Aligned_cols=227 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCc------------ccCcCHHHHHH
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLASDLGIKF------------ELNESIFDRAN 250 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~ 250 (675)
|.++|++|+|||++++.+...... ...+.+++|...+...++..+-..+.... .
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~~----~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~---------- 1372 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFPD----FEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQL---------- 1372 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCTT----EEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESST----------
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC----CceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcC----------
Q ss_pred HHHHHHhccCeEEEEecCccccc--------------------ccccccCCCCccccccccCCCCeEEEEeccchh----
Q 005834 251 RLCRVLKNEERHLIILDNIWGEL--------------------KFDEVGIPSGDVKKERMDDQRRCTIILTSRRQD---- 306 (675)
Q Consensus 251 ~l~~~l~~~k~~LlVlDdv~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~s~ilvTtR~~~---- 306 (675)
||+.++++||+.-.. .|-.-...... ...+..+|.|.-...
T Consensus 1373 --------Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~-------~i~d~~~vaamnPp~~gGr 1437 (3245)
T 3vkg_A 1373 --------GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWI-------KLDKIQFVGACNPPTDAGR 1437 (3245)
T ss_dssp --------TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEE-------EESSEEEEEEECCTTSTTC
T ss_pred --------CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEE-------EecCeEEEEEcCCCCCCCC
Q ss_pred --HHhhhcCCcceEecCCCCHHHHHHHHHHHhC-CCCCCCCchHHHHHHHHHhCCChhHHHHHHHHHhcCChHHHHHHHH
Q 005834 307 --LLRNVMNSQKEIQIDALSKEEALHLFQKIVG-DSMKTSAFQPIAHEIVGRCGELPVALITLAKALKNMSLETWKYVLR 383 (675)
Q Consensus 307 --va~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~-~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~w~~~l~ 383 (675)
+..........+.+...+.++-..+|..... -....+.+...+..+++.. .+-|..+..
T Consensus 1438 ~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~at------------------i~ly~~v~~ 1499 (3245)
T 3vkg_A 1438 VQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAM------------------VEFYSESQK 1499 (3245)
T ss_dssp CCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHH------------------HHHHHHHHH
T ss_pred ccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH------------------HHHHHHHHH
Q ss_pred HHhhcchhhccchhHHHHHHHhhcccccCChhHHHHHHHhcCc-CCCCccchhhHHHHHHhccc--ccCCCChHHHHHHH
Q 005834 384 QLRSSYAKEIDGMEKNVYLSLKLSYDLLGNKEAKSLFLLCGLF-SEGHAIPVSSLLRYGMGMGY--FRNVYTPEEARSTV 460 (675)
Q Consensus 384 ~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cf~~~s~f-p~~~~i~~~~Li~~W~aeg~--i~~~~~~~~~~~~~ 460 (675)
. +..-.-+.+-.....+-+.|.-+... +.....+.+.++++|.-|.+ +.++-..++....+
T Consensus 1500 ~----------------~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f 1563 (3245)
T 3vkg_A 1500 R----------------FTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWT 1563 (3245)
T ss_dssp H----------------SCTTTSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHH
T ss_pred h----------------cCCCcCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHHHHHhcc
Q 005834 461 HTLISKLKSSCL 472 (675)
Q Consensus 461 ~~~~~~L~~~~l 472 (675)
.+++.+.+...|
T Consensus 1564 ~~~l~~~~~~~F 1575 (3245)
T 3vkg_A 1564 DKKIDEVALKHF 1575 (3245)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
No 428
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.02 E-value=0.11 Score=52.10 Aligned_cols=38 Identities=37% Similarity=0.423 Sum_probs=28.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEe
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEV 218 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 218 (675)
..++|+|+|.+|+||||++..++...... -..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 45799999999999999999999877643 123444443
No 429
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.99 E-value=0.09 Score=48.29 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 430
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.90 E-value=0.19 Score=53.63 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCC-CHHHHHHHHHH----HhCCCc-----
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENP-DHQKIQDKLAS----DLGIKF----- 239 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~----~l~~~~----- 239 (675)
+++.|.. .+-..++|.|..|+|||+|+.++.+... -+.++++-+.+.. ...++++++-+ .++...
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 4555542 3456899999999999999999988743 4678888887763 34455544322 122110
Q ss_pred ----ccCcCHHH------HHHHHHHHHh-ccCeEEEEecCcc
Q 005834 240 ----ELNESIFD------RANRLCRVLK-NEERHLIILDNIW 270 (675)
Q Consensus 240 ----~~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~ 270 (675)
..+..... ..-.+.+++. .++..||++|++.
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 00111111 1223455554 3689999999985
No 431
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.88 E-value=0.52 Score=48.77 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=62.4
Q ss_pred hhhhcCCCCccEEEecCCCCCCCccccccccCCCEEEeccccCCC--cccccCCCCCcEEEeeCCCCCccch-hhcCCCC
Q 005834 561 DHFFDGTEGLRVLNFTGIHFSSLPSSLGRLINLQTLCLEYCRLKD--IVIVGQLKKLEILSFRGSDIERLPL-EFGQLTR 637 (675)
Q Consensus 561 ~~~~~~l~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~ 637 (675)
...|.++..|+.+.+..+...--...+.++..|+.+.+.. .+.. ...+.++.+|+.+.|.. .++.++. .|..+.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred cceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence 3446666777777665543221123455666777776642 2333 23556667777777754 3555544 4666777
Q ss_pred CCEecCcCcccCcccchhhhhccCCccCEEeCcC
Q 005834 638 LQLLDLSNCRRLEVITPNVICQSWLHLEVFGMAA 671 (675)
Q Consensus 638 L~~L~l~~~~~l~~lp~~~~~~~L~~L~~L~l~~ 671 (675)
|+.+.+.. .+..++...+. ++++|+.+++.+
T Consensus 336 L~~i~ip~--sv~~I~~~aF~-~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFS-NCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGT-TCTTCCEEEESS
T ss_pred CCEEEECc--ccCEEhHhHhh-CCCCCCEEEECC
Confidence 77777754 25666666665 667777776654
No 432
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.86 E-value=0.3 Score=46.48 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=28.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEE
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAE 217 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (675)
...|.|.|..|+||||+++.+.+..... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988753 455344443
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.86 E-value=0.096 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|.|+|+.|+||||||+.++....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999988753
No 434
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.84 E-value=0.29 Score=45.74 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
..|.|.|..|+||||+++.+.+..... .+..+.+..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999988754 3433333332222234455555554
No 435
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.82 E-value=0.092 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
-.+++|+|..|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.81 E-value=0.088 Score=50.35 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||++.++.-..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987654
No 437
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.79 E-value=0.52 Score=49.58 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=36.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPDHQKIQDKLAS 233 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 233 (675)
-.++.|.|.+|+||||||..++.....+ =..++|++... +..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 4589999999999999999999887654 23577776543 44455555543
No 438
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.75 E-value=0.078 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|+.|+|||||++.+..-..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999876543
No 439
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.70 E-value=0.1 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 440
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.70 E-value=0.09 Score=51.13 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||.+.++.-..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999876543
No 441
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.69 E-value=0.072 Score=50.01 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||.+.++.-..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999876543
No 442
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.65 E-value=0.083 Score=50.64 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||.+.++.-..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999876543
No 443
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.64 E-value=0.09 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..++|.|+|+.|+||||||..++....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 346899999999999999999987643
No 444
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.57 E-value=0.084 Score=51.44 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||++.+..-..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346899999999999999999977554
No 445
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.57 E-value=0.085 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||.+.++.-..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999876543
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.56 E-value=0.086 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|.|||||.+.++.-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999987654
No 447
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.52 E-value=0.097 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||++.++.-..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 446899999999999999999876543
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.51 E-value=0.13 Score=50.73 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
..++|.|+|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 456899999999999999999988743
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.50 E-value=0.11 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
.-.+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999875
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.48 E-value=0.11 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 451
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.46 E-value=0.089 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||++.++.-..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999877544
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.45 E-value=0.07 Score=52.82 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.38 E-value=0.12 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
+.|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999988653
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.38 E-value=0.1 Score=54.66 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998765
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.35 E-value=0.12 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 456
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.34 E-value=0.13 Score=51.06 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..-.+++|+|..|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998876
No 457
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.27 E-value=0.24 Score=45.26 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999988754
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.27 E-value=0.12 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 459
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.27 E-value=0.36 Score=45.15 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCe
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDK 212 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 212 (675)
...|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3578999999999999999999988743 3444
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.26 E-value=0.15 Score=48.75 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999988654
No 461
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.25 E-value=0.11 Score=50.33 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||.+.++.-..
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999876543
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.22 E-value=0.11 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.19 E-value=0.26 Score=46.45 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=25.6
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
......|.|.|..|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999998765
No 464
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.13 E-value=0.1 Score=50.32 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||.+.++.-..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999999999999999876554
No 465
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.11 E-value=0.11 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.-.+++|+|..|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999987654
No 466
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.08 E-value=0.14 Score=49.74 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..-.+++|+|+.|+|||||++.+......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34569999999999999999999886543
No 467
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.07 E-value=0.11 Score=50.66 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||++.++.-..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 446899999999999999999877543
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.00 E-value=0.12 Score=50.80 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.++.|+|.+|+|||||+..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987554
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.98 E-value=0.15 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
...|.|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998864
No 470
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.97 E-value=0.11 Score=50.33 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
-.+++|+|..|+|||||.+.++.-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999887543
No 471
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.93 E-value=0.12 Score=50.36 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||.+.++.-..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999876543
No 472
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.90 E-value=0.11 Score=51.07 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.-.+++|+|..|+|||||.+.++.-..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346899999999999999999877554
No 473
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.88 E-value=0.11 Score=47.15 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 474
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.82 E-value=0.13 Score=45.27 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.80 E-value=0.28 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.115 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
....+++|+|+.|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 476
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.75 E-value=0.14 Score=50.06 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVT 205 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~ 205 (675)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998764
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.68 E-value=0.15 Score=47.29 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=21.5
Q ss_pred HHHHHHhccCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 169 QDVLEALKDDKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 169 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
+.+.+.....+.-.|+|+|.+|+|||||...+.+..
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333333334445578999999999999999888653
No 478
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.66 E-value=0.24 Score=52.88 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHhc--cCCccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 163 SRKKVFQDVLEALK--DDKLNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 163 gr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+......
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45555555665552 234568999999999999999999999863
No 479
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.64 E-value=0.36 Score=48.91 Aligned_cols=43 Identities=35% Similarity=0.409 Sum_probs=32.4
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhh--ccCCCCeEEEEEeCCC
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVT--EDKLFDKVAMAEVTEN 221 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~ 221 (675)
....+++.+.|-||+||||+|..++.... .. =..+.-|+....
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCC
Confidence 45568999999999999999999988776 32 234666666543
No 480
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.63 E-value=0.14 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 481
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.53 E-value=0.12 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhc
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTE 206 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 206 (675)
..+|.|+|.+|+||||++..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887653
No 482
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.52 E-value=0.18 Score=49.13 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
++|+|.|-||+||||+|..++...... =..+.-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 578889999999999999999887743 22466666553
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.44 E-value=0.14 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 484
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.38 E-value=0.19 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999884
No 485
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.36 E-value=0.34 Score=50.92 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCcc------
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLV-KQVAKQVTEDKLFD-KVAMAEVTENP-DHQKIQDKLASDLGIKFE------ 240 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~------ 240 (675)
.++.|.. .+-..++|+|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++...=.....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 4555542 34467899999999999995 57777653 45 35777787765 455666666543222110
Q ss_pred cCcCHHH------HHHHHHHHHh-ccCeEEEEecCccc
Q 005834 241 LNESIFD------RANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~~~------~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
....... ..-.+.+++. .++..|+++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0111111 1224455554 36899999999844
No 486
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.32 E-value=0.11 Score=49.42 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 179 KLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998775
No 487
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.32 E-value=0.15 Score=46.39 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
-.|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998653
No 488
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.28 E-value=0.28 Score=51.61 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=57.5
Q ss_pred HHHHhcc-CCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCc------c
Q 005834 171 VLEALKD-DKLNIIGVYGMGGVGKTTLV-KQVAKQVTEDKLFD-KVAMAEVTENP-DHQKIQDKLASDLGIKF------E 240 (675)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~ 240 (675)
.++.|.. .+-..++|+|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++...=.... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 4444442 34467899999999999995 57777653 45 35777787765 45566666654211110 0
Q ss_pred cCcCHH------HHHHHHHHHHh-ccCeEEEEecCccc
Q 005834 241 LNESIF------DRANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~~------~~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
.+.... ...-.+.+++. .++..|+++||+..
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 011111 11224455555 36899999999844
No 489
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.19 E-value=0.4 Score=48.27 Aligned_cols=45 Identities=31% Similarity=0.294 Sum_probs=33.5
Q ss_pred cCCccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCCCCC
Q 005834 177 DDKLNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTENPD 223 (675)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 223 (675)
+...+++.+.|-||+||||+|..++...... -..++-|+.....+
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~ 57 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHN 57 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCC
Confidence 4557888899999999999999999887643 23566666654433
No 490
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.16 E-value=0.14 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
-.+++|+|..|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 491
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.09 E-value=0.2 Score=46.96 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
.|.+.|.||+||||+|..+......++ ++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 478899999999999999988876542 33 44445443
No 492
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.09 E-value=0.21 Score=49.26 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhhccCCCCeEEEEEeCC
Q 005834 180 LNIIGVYGMGGVGKTTLVKQVAKQVTEDKLFDKVAMAEVTE 220 (675)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 220 (675)
.++|+|.|-||+||||+|..++......+ ..+.-|....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 46888899999999999999998876431 2456666543
No 493
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.07 E-value=0.19 Score=45.04 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQ 203 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (675)
.+...|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999998764
No 494
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.06 E-value=0.2 Score=46.81 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 178 DKLNIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.....|.|+|.+|+|||||+..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998754
No 495
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.04 E-value=0.17 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
.-|.|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998754
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.02 E-value=0.18 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 005834 183 IGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~ 204 (675)
|+|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997654
No 497
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.95 E-value=0.5 Score=49.59 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred HHHHhc-cCCccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCc------c
Q 005834 171 VLEALK-DDKLNIIGVYGMGGVGKTTLV-KQVAKQVTEDKLFD-KVAMAEVTENP-DHQKIQDKLASDLGIKF------E 240 (675)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~ 240 (675)
.++.|. =.+-..++|.|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++.+.=.... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 444444 234457899999999999996 56666422 33 46788888765 45666666554321111 0
Q ss_pred cCcCHH------HHHHHHHHHHh-ccCeEEEEecCccc
Q 005834 241 LNESIF------DRANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 241 ~~~~~~------~~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
...+.. .....+.+++. .++..||++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 011111 11223445554 36899999999844
No 498
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.94 E-value=0.3 Score=51.42 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=52.2
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHhhccCCCC-eEEEEEeCCCCC-HHHHHHHHHHHhCCC--------cccCc----
Q 005834 179 KLNIIGVYGMGGVGKTTLV-KQVAKQVTEDKLFD-KVAMAEVTENPD-HQKIQDKLASDLGIK--------FELNE---- 243 (675)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~~~~i~~~l~~~--------~~~~~---- 243 (675)
+-..++|+|.+|+|||+|| ..+.+... -+ .++++-+.+..+ ..++.+++...=... .+.+.
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3456899999999999995 57777643 44 457777777643 445555554321110 00001
Q ss_pred CHHHHHHHHHHHHh-ccCeEEEEecCccc
Q 005834 244 SIFDRANRLCRVLK-NEERHLIILDNIWG 271 (675)
Q Consensus 244 ~~~~~~~~l~~~l~-~~k~~LlVlDdv~~ 271 (675)
......-.+.+++. .++..|+++||+..
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 01122334455554 36899999999843
No 499
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.94 E-value=0.18 Score=44.63 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 005834 182 IIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 500
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.94 E-value=0.16 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 005834 181 NIIGVYGMGGVGKTTLVKQVAKQV 204 (675)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~ 204 (675)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
Done!