Your job contains 1 sequence.
>005837
MLGRVEQVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPNPVGRPGARVVLVR
ASGGDGGGGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNW
NKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE
GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS
IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP
PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ
VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN
LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV
MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIV
TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASR
GIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK
GHPLHDVPSAFELMR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005837
(675 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077592 - symbol:AT3G06980 species:3702 "Arabi... 1640 2.5e-173 2
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de... 1557 7.5e-160 1
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara... 484 1.4e-50 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 307 6.1e-34 2
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 307 6.1e-34 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 308 4.3e-32 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 308 4.3e-32 2
DICTYBASE|DDB_G0269986 - symbol:DDB_G0269986 species:4468... 191 5.7e-31 3
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 360 1.6e-30 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 298 5.1e-30 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 295 6.3e-30 2
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 295 6.3e-30 2
UNIPROTKB|E2RKU0 - symbol:DDX28 "Uncharacterized protein"... 348 2.6e-29 1
MGI|MGI:1919236 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) bo... 345 7.3e-29 1
RGD|1311976 - symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box po... 345 1.3e-28 2
UNIPROTKB|Q9NUL7 - symbol:DDX28 "Probable ATP-dependent R... 342 1.7e-28 1
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 337 3.6e-28 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 272 7.1e-28 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 272 7.1e-28 2
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 288 9.5e-28 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 251 1.2e-27 2
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 251 1.2e-27 2
GENEDB_PFALCIPARUM|PFF1500c - symbol:PFF1500c "DEAD/DEAH ... 279 1.4e-27 2
UNIPROTKB|C6KTE4 - symbol:PFF1500c "DEAD/DEAH box ATP-dep... 279 1.4e-27 2
TIGR_CMR|GSU_0491 - symbol:GSU_0491 "ATP-dependent RNA he... 264 1.9e-27 2
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 270 2.3e-27 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 279 2.3e-27 2
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 285 2.6e-27 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 312 4.1e-27 1
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 271 4.1e-27 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 335 6.2e-27 1
TIGR_CMR|VC_2564 - symbol:VC_2564 "ATP-dependent RNA heli... 265 7.4e-27 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 286 1.0e-26 2
SGD|S000000441 - symbol:PRP5 "RNA helicase in the DEAD-bo... 332 1.1e-26 1
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 256 1.1e-26 3
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 281 1.2e-26 2
UNIPROTKB|Q47Z59 - symbol:CPS_3215 "Putative ATP-dependen... 264 1.3e-26 2
TIGR_CMR|CPS_3215 - symbol:CPS_3215 "putative ATP-depende... 264 1.3e-26 2
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 271 1.3e-26 2
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 265 1.5e-26 3
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 274 1.9e-26 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 267 2.1e-26 3
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 268 2.4e-26 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 226 2.7e-26 2
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 328 3.2e-26 1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 328 3.2e-26 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 274 3.6e-26 2
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 275 3.9e-26 2
TAIR|locus:2098886 - symbol:AT3G61240 species:3702 "Arabi... 245 3.9e-26 2
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 324 4.1e-26 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 266 4.3e-26 2
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 265 4.4e-26 3
UNIPROTKB|A7YWQ8 - symbol:DDX28 "Uncharacterized protein"... 321 4.6e-26 1
ZFIN|ZDB-GENE-030131-6611 - symbol:wu:fk48d07 "wu:fk48d07... 252 4.7e-26 3
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 317 5.6e-26 2
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer... 318 8.4e-26 1
CGD|CAL0003050 - symbol:HAS1 species:5476 "Candida albica... 249 9.0e-26 2
UNIPROTKB|Q5AK59 - symbol:HAS1 "ATP-dependent RNA helicas... 249 9.0e-26 2
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 254 1.2e-25 2
TIGR_CMR|SO_4034 - symbol:SO_4034 "ATP-dependent RNA heli... 257 1.2e-25 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 266 2.0e-25 2
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 235 3.0e-25 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 279 3.1e-25 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 279 3.1e-25 2
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 251 3.2e-25 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 246 3.6e-25 2
UNIPROTKB|P54824 - symbol:ddx6 "ATP-dependent RNA helicas... 248 4.1e-25 2
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 241 4.1e-25 2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 262 4.1e-25 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 244 4.7e-25 2
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 317 4.9e-25 1
WB|WBGene00002244 - symbol:laf-1 species:6239 "Caenorhabd... 315 5.4e-25 1
TAIR|locus:2050715 - symbol:AT2G45810 species:3702 "Arabi... 239 5.5e-25 2
ZFIN|ZDB-GENE-070912-83 - symbol:ddx6 "DEAD (Asp-Glu-Ala-... 248 5.5e-25 2
ASPGD|ASPL0000042587 - symbol:AN1750 species:162425 "Emer... 229 6.9e-25 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 243 7.0e-25 2
TAIR|locus:2086909 - symbol:AT3G18600 species:3702 "Arabi... 240 7.6e-25 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 312 7.7e-25 1
UNIPROTKB|I3LB32 - symbol:DDX28 "Uncharacterized protein"... 310 8.0e-25 1
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 264 1.0e-24 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 264 1.0e-24 2
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 276 1.2e-24 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 305 1.2e-24 1
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 271 1.2e-24 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 271 1.2e-24 2
UNIPROTKB|Q5ZKB9 - symbol:DDX6 "Probable ATP-dependent RN... 244 1.2e-24 2
UNIPROTKB|E1BDM8 - symbol:DDX6 "Uncharacterized protein" ... 244 1.2e-24 2
UNIPROTKB|E2RR01 - symbol:DDX6 "Uncharacterized protein" ... 244 1.2e-24 2
UNIPROTKB|P26196 - symbol:DDX6 "Probable ATP-dependent RN... 244 1.2e-24 2
UNIPROTKB|F1SAJ5 - symbol:DDX6 "Uncharacterized protein" ... 244 1.2e-24 2
MGI|MGI:104976 - symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box ... 244 1.2e-24 2
RGD|1564560 - symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box hel... 244 1.2e-24 2
ZFIN|ZDB-GENE-041001-215 - symbol:ddx1 "DEAD (Asp-Glu-Ala... 182 1.3e-24 3
FB|FBgn0086130 - symbol:KH1 "KH1" species:7227 "Drosophil... 308 1.3e-24 1
SGD|S000002319 - symbol:DHH1 "Cytoplasmic DExD/H-box heli... 243 1.3e-24 2
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 252 1.3e-24 3
UNIPROTKB|Q8TDD1 - symbol:DDX54 "ATP-dependent RNA helica... 262 1.4e-24 2
WB|WBGene00018890 - symbol:F55F8.2 species:6239 "Caenorha... 311 1.7e-24 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 239 1.8e-24 2
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 239 1.8e-24 2
WARNING: Descriptions of 751 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2077592 [details] [associations]
symbol:AT3G06980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0006655 "phosphatidylglycerol biosynthetic process"
evidence=RCA] [GO:0009658 "chloroplast organization" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006968
GO:GO:0003723 EMBL:AC016827 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 EMBL:AJ296275 EMBL:AY048260 EMBL:AY113064
EMBL:BT002520 IPI:IPI00545954 RefSeq:NP_187354.1 UniGene:At.18753
ProteinModelPortal:Q8GUG7 SMR:Q8GUG7 IntAct:Q8GUG7 STRING:Q8GUG7
PaxDb:Q8GUG7 PRIDE:Q8GUG7 EnsemblPlants:AT3G06980.1 GeneID:819883
KEGG:ath:AT3G06980 KEGG:dosa:Os03t0108600-01 GeneFarm:1029
TAIR:At3g06980 HOGENOM:HOG000078675 InParanoid:Q8GUG7 OMA:ANCRSIS
PhylomeDB:Q8GUG7 ProtClustDB:CLSN2915517 Genevestigator:Q8GUG7
GermOnline:AT3G06980 Uniprot:Q8GUG7
Length = 781
Score = 1640 (582.4 bits), Expect = 2.5e-173, Sum P(2) = 2.5e-173
Identities = 318/455 (69%), Positives = 376/455 (82%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DVLIATPGRF +L+ EGIL L NLRCAILDEVDILF D++FE ALQ+LI+SSPVTAQYLF
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
VTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF NKK
Sbjct: 564 VTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKK 623
Query: 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577
+ALLQ++E++PVSKTI+FCNKI TCRKVENI KR DRKE ++ VLPFHAAL QE+RL NM
Sbjct: 624 TALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNM 683
Query: 578 KEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXX 637
+EFT+S+ +E LFLVCTDRASRGIDF+GVDHVVLFDFPRDPSEY
Sbjct: 684 QEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKG 743
Query: 638 KAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
KAFIFVVGKQV LA+RI+ERN KGHP+HDVP+A+E
Sbjct: 744 KAFIFVVGKQVGLARRIIERNEKGHPVHDVPNAYE 778
Score = 66 (28.3 bits), Expect = 2.5e-173, Sum P(2) = 2.5e-173
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 145 KGVISSFSRLKAQRVKAVVDK 165
+G+ +SF RLKAQ+VKA+V K
Sbjct: 98 RGLTASFGRLKAQKVKALVGK 118
>UNIPROTKB|Q0DVX2 [details] [associations]
symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006968 "cellular defense
response" evidence=IDA] [GO:0009817 "defense response to fungus,
incompatible interaction" evidence=IDA] [GO:0071369 "cellular
response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
"cellular response to salicylic acid stimulus" evidence=IEP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
Length = 641
Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
Identities = 327/612 (53%), Positives = 419/612 (68%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTXXXXXXXXXXXXXXXXXSSNWNKDPSQPTTS 130
Y R P++T GA L+D TG VIVWGGT S + P +P
Sbjct: 54 YERVPMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAVL-------STTTRVPDRP--- 103
Query: 131 APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSL 190
+ N S I +F RLKAQ+VK V+ +RSA K+ + R S++ PS
Sbjct: 104 ----KENGRSTS-----IGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSD 152
Query: 191 E--------------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWR 236
E N R+ D A S++ + Y + + G++ G +
Sbjct: 153 ESDEDGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRGADDL-DFPGSEATSGSK 211
Query: 237 SGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQA 296
G+I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQA
Sbjct: 212 RWGNISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQA 268
Query: 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356
MA+ PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAE
Sbjct: 269 MAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAE 328
Query: 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL 416
LASQVL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +
Sbjct: 329 LASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFV 388
Query: 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
QL NLRC +LDEVDIL+ +E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPD
Sbjct: 389 QLNNLRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPD 448
Query: 477 CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFC 536
C+++MGPG+HR S LEE LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FC
Sbjct: 449 CELIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFC 508
Query: 537 NKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596
NKI TCRKVEN L+R DRK ++++VLPFHAALDQ+ R+AN+KEF ++ ++ +FLVCTD
Sbjct: 509 NKIETCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADS-MFLVCTD 567
Query: 597 RASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIME 656
RASRGIDFA V+HVVLFD+PRDPSEY KAF+F VGKQVSLA+R+ME
Sbjct: 568 RASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVME 627
Query: 657 RNRKGHPLHDVP 668
RN KGHPLHDVP
Sbjct: 628 RNIKGHPLHDVP 639
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 484 (175.4 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 134/412 (32%), Positives = 217/412 (52%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH-HARFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF--EVAL--- 442
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F D F E+
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMF-DRGFGPEIRKFLA 289
Query: 443 ---QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR-ISPGLEEFLVD 498
Q + ++ Q + VTAT+ + + + E F + + +H+ I+ +F +
Sbjct: 290 PLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDF-IK 348
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKE 556
SG ++ K ALLQ++E S SK +VFCN + + R V++ L E
Sbjct: 349 LSGGED-----------KLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLS-----E 392
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDF 615
++ + +H + E R+ N+K+F + +E LVCTD A+RG+D VDHVV+FDF
Sbjct: 393 NQISTVNYHGEVPAEQRVENLKKF---KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDF 448
Query: 616 PRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
P++ +Y K V K LA RI E R L +
Sbjct: 449 PKNSIDYLHRTGRTARMGAKG-KVTSLVSRKDQMLAARIEEAMRNNESLESL 499
Score = 59 (25.8 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 128 TTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTT 187
TTS+P N K I RL+ + +K K +V +++E + K +
Sbjct: 50 TTSSPTTETNVTDPDQLKHTIL-LERLRLRHLKESA-KPPQQRPSSVVGVEEESSIRKKS 107
Query: 188 PSL-ENFRELG 197
L ENF+ELG
Sbjct: 108 KKLVENFQELG 118
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 307 (113.1 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 67/194 (34%), Positives = 110/194 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
Score = 93 (37.8 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 30/107 (28%), Positives = 50/107 (46%)
Query: 517 KSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
KSALL LI + + ++F I T ++ + +++ FH+ Q R
Sbjct: 230 KSALLSHLINEQQWDQALIF---IETKHGAAKLVSQLEKRGIHAEA--FHSGRSQAIRAQ 284
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+++F + + K +LV T A+RGID + VV +D P EY
Sbjct: 285 LLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEY 327
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 307 (113.1 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 67/194 (34%), Positives = 110/194 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
Score = 93 (37.8 bits), Expect = 6.1e-34, Sum P(2) = 6.1e-34
Identities = 30/107 (28%), Positives = 50/107 (46%)
Query: 517 KSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
KSALL LI + + ++F I T ++ + +++ FH+ Q R
Sbjct: 230 KSALLSHLINEQQWDQALIF---IETKHGAAKLVSQLEKRGIHAEA--FHSGRSQAIRAQ 284
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+++F + + K +LV T A+RGID + VV +D P EY
Sbjct: 285 LLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEY 327
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 308 (113.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 68/198 (34%), Positives = 113/198 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + +LDE D + D F ++ ++
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML-DMGFLPDIRRILKL 187
Query: 449 SPVTAQYLFVTATLPVEI 466
P + Q L +AT EI
Sbjct: 188 LPESRQNLLFSATFSKEI 205
Score = 80 (33.2 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXX 630
+++ A M+ T + + R+ LV TD A+RG+D + HV+ F+ P +Y
Sbjct: 290 KSQAARMRALTQFKQGKIRV-LVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTG 348
Query: 631 XXXXXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
A V G +V L + I + + P +P
Sbjct: 349 RASNDGV-AISLVSGDEVRLLRDIEKLLQSKMPQEVIP 385
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 308 (113.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 68/198 (34%), Positives = 113/198 (57%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + +LDE D + D F ++ ++
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML-DMGFLPDIRRILKL 187
Query: 449 SPVTAQYLFVTATLPVEI 466
P + Q L +AT EI
Sbjct: 188 LPESRQNLLFSATFSKEI 205
Score = 80 (33.2 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXX 630
+++ A M+ T + + R+ LV TD A+RG+D + HV+ F+ P +Y
Sbjct: 290 KSQAARMRALTQFKQGKIRV-LVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTG 348
Query: 631 XXXXXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
A V G +V L + I + + P +P
Sbjct: 349 RASNDGV-AISLVSGDEVRLLRDIEKLLQSKMPQEVIP 385
>DICTYBASE|DDB_G0269986 [details] [associations]
symbol:DDB_G0269986 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269986
GO:GO:0005524 EMBL:AAFI02000005 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_646448.1
EnsemblProtists:DDB0190716 GeneID:8617407 KEGG:ddi:DDB_G0269986
InParanoid:Q55CN3 Uniprot:Q55CN3
Length = 796
Score = 191 (72.3 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 54/167 (32%), Positives = 71/167 (42%)
Query: 502 DQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+ + DK T K+ I K KT++FCNK +CR E L E +
Sbjct: 618 ENQEDKVETTTTTTTKTTTDGNKIAKQQKRKTLIFCNKPDSCRSTEYFLT-----ENGIN 672
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H + R N K F KE FLV TD ASRGID +DHV+LFDFP +P
Sbjct: 673 ATSLHGEMPPHRRSENWKSFLNG-DKE---FLVATDIASRGIDIGLIDHVILFDFPSNPI 728
Query: 621 EYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+Y + + K LA I E RKG+ L ++
Sbjct: 729 DYLHRIGRTARAGNRGLVTCL-ITHKDRYLADEIKESIRKGYTLENI 774
Score = 151 (58.2 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 269 SFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPV 326
+F LG ++ESLK+ N PS IQ +A PP++ K + Q+G+GKTL YLLP+
Sbjct: 226 AFSRLGIKKNLVESLKKHFNITIPSLIQQLAIPPILSNSKDVLFVSQTGTGKTLTYLLPI 285
Query: 327 IQRLRQEELQGLSK 340
IQ +++ E Q L +
Sbjct: 286 IQNIKKSEEQELKE 299
Score = 131 (51.2 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 48/180 (26%), Positives = 87/180 (48%)
Query: 332 QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT-GGFRQKTQL 390
+E + L K P+ +IL PT ELA QV+ + +S V F ++ GG L
Sbjct: 359 KENSRLLLKRAPRRPKAIILVPTRELAIQVMKVAKKIS-FEVKFSCTAISSGGGDLNKYL 417
Query: 391 ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN-----DED------- 437
+ + +D+LI+TPG + LI++ + LR ++DE D +F ++D
Sbjct: 418 KTFKNLPIDILISTPGSLIKLIEQKKIFFSKLRHLVIDEADSMFTIGKGFEQDIDKIVQP 477
Query: 438 FEVALQS---LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
F+ LQ+ + S + + A +ATL ++ ++ + FP + + P +H+ LE+
Sbjct: 478 FKYRLQNKQEIGSENAINAT--ICSATLTEQLMKQINQSFPSIEKLSTPTIHKSLNTLEQ 535
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 360 (131.8 bits), Expect = 1.6e-30, P = 1.6e-30
Identities = 119/413 (28%), Positives = 200/413 (48%)
Query: 233 RGWRSG---G---SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ 286
+GW+S G SI+++Q P PK + + DG S+K+F ++E+L+RQ
Sbjct: 111 KGWKSNRALGDYFSINSIQSAPPFVPKHKDE-GDDGASASKKTFHCFNLCPELVETLQRQ 169
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
N + P+ +Q P +++G++ + A ++GSGKTL YLLP+I RL+++ L G +S
Sbjct: 170 NIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSI---- 225
Query: 347 RVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATP 404
R V++ P+ ELA QV S RS+S + G+ + VV GG T G D+L++TP
Sbjct: 226 RAVVIVPSRELAEQVNSVARSVSERFGLVVK--VVGGGRGVGTIKAAFARGQPDILVSTP 283
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT------------ 452
G + + + + L L ++DE D +F D+ F L+ ++S + V
Sbjct: 284 GALLKALWKRFISLSELYFLVIDEADTMF-DDSFAGMLEKILSHTQVASRLSETIGLARK 342
Query: 453 AQYLFVTATLPV---EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
AQ + V AT P ++ +K ++ V +H + P +++ + G +DK
Sbjct: 343 AQLVVVGATFPGGVGDVLSKATDL-ASISTVKSRMLHHLMPHIKQTFLRVKG---ADK-- 396
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
L AL + ++ +VFCN T N L + +E V + +
Sbjct: 397 ---ILELHQALKRAEQEQ--KGVLVFCNSASTV----NWLG-YSLEEMGVGHMRLQGEMP 446
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R ++F ++ LVCTD ASRG+D V +V +DFP ++Y
Sbjct: 447 AAMREGVFRDFQRGKTN----VLVCTDIASRGLDTQRVGLIVNYDFPESQTDY 495
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 298 (110.0 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 72/198 (36%), Positives = 110/198 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K+ SG R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLAKGH-----KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L+++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLMFSATFSDEI 192
Score = 105 (42.0 bits), Expect = 5.1e-30, Sum P(2) = 5.1e-30
Identities = 45/163 (27%), Positives = 71/163 (43%)
Query: 516 KKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
+KSALL QLI++ + +VF T + K + E + H Q R
Sbjct: 229 QKSALLIQLIKQENWQQVLVFSR---TKHGANRLAKSLIQAE--ISAAAIHGNKSQGART 283
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+ +F +S E R+ LV TD A+RG+D + VV FD P P +Y
Sbjct: 284 KALADF---KSGEVRV-LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGA 339
Query: 635 XXXKAFIFVVGKQVSLAQ-------RIMERNR-KGH-PLHDVP 668
+A V +++ L + R++ER +G P+H +P
Sbjct: 340 TG-QAVSLVSSEEIKLLKDIERLINRVLERQEVEGFSPVHALP 381
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 295 (108.9 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 85/270 (31%), Positives = 136/270 (50%)
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSI---HNLQYEPTDCPK----------QRHKYSA 260
+ +YN+ SN + K+ ID W++ + N E D K +HK +
Sbjct: 45 VPNYNNNSNNYGKNLAPID--WKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITI 102
Query: 261 -DGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
+G+ + S ++G DY+I+SLK N + P+ IQ +P + GK I ++GSG
Sbjct: 103 LEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSG 162
Query: 318 KTLAYLLPV-IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
KTLA++LP + L Q L K G P V++LAPT ELA Q+ C S R
Sbjct: 163 KTLAFILPAFVHILAQPNL----KYGDG-PIVLVLAPTRELAEQIRQECIKFSTES-KIR 216
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
+ GG + Q+ L++GV +LIA PGR + L+++ + L+ + +LDE D + D
Sbjct: 217 NTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKML-DM 275
Query: 437 DFEVALQSLISSSPVTAQYLFVTATLPVEI 466
FE+ ++ ++ Q L +AT P E+
Sbjct: 276 GFELQIRKIVDQIRPDRQTLMWSATWPKEV 305
Score = 107 (42.7 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 45/158 (28%), Positives = 67/158 (42%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
N KS LLQ I K + IVF + T + + I K + + L H QE R
Sbjct: 348 NLKS-LLQRIFKDN-DRIIVF---VETKKNADFITKAL--RLDGMPALCIHGDKKQEERR 400
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+ EF T +S ++ TD ASRG+D V +V+ FDFP +Y
Sbjct: 401 WVLNEFKTGKSP----IMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
+F F+ + LA+ +++ R+ VP E
Sbjct: 457 HGA-SFTFLTADKYRLAKDLVKILRESE--QPVPPQLE 491
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 295 (108.9 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 85/270 (31%), Positives = 136/270 (50%)
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSI---HNLQYEPTDCPK----------QRHKYSA 260
+ +YN+ SN + K+ ID W++ + N E D K +HK +
Sbjct: 45 VPNYNNNSNNYGKNLAPID--WKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITI 102
Query: 261 -DGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
+G+ + S ++G DY+I+SLK N + P+ IQ +P + GK I ++GSG
Sbjct: 103 LEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSG 162
Query: 318 KTLAYLLPV-IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
KTLA++LP + L Q L K G P V++LAPT ELA Q+ C S R
Sbjct: 163 KTLAFILPAFVHILAQPNL----KYGDG-PIVLVLAPTRELAEQIRQECIKFSTES-KIR 216
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
+ GG + Q+ L++GV +LIA PGR + L+++ + L+ + +LDE D + D
Sbjct: 217 NTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKML-DM 275
Query: 437 DFEVALQSLISSSPVTAQYLFVTATLPVEI 466
FE+ ++ ++ Q L +AT P E+
Sbjct: 276 GFELQIRKIVDQIRPDRQTLMWSATWPKEV 305
Score = 107 (42.7 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 45/158 (28%), Positives = 67/158 (42%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
N KS LLQ I K + IVF + T + + I K + + L H QE R
Sbjct: 348 NLKS-LLQRIFKDN-DRIIVF---VETKKNADFITKAL--RLDGMPALCIHGDKKQEERR 400
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+ EF T +S ++ TD ASRG+D V +V+ FDFP +Y
Sbjct: 401 WVLNEFKTGKSP----IMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
+F F+ + LA+ +++ R+ VP E
Sbjct: 457 HGA-SFTFLTADKYRLAKDLVKILRESE--QPVPPQLE 491
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 348 (127.6 bits), Expect = 2.6e-29, P = 2.6e-29
Identities = 133/453 (29%), Positives = 204/453 (45%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLK--RQNFLR 290
RGW++ S + + + +H+ A + S SF +LG ++ +LK LR
Sbjct: 91 RGWKNRRS----RRDHFSIERAQHEVPALRNLSSEGSFADLGLEPPVLRALKDAAPEVLR 146
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P+ +Q+ PP++ G+ + A ++GSGKTL YLLP++QRL GL+ ++ +PR ++
Sbjct: 147 PTTVQSSTIPPLLRGRHILCAAETGSGKTLGYLLPLLQRLLGRP--GLNPHSTPAPRGLV 204
Query: 351 LAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGF-RQKTQLENLQEGVDVLIATPGRFM 408
L P+ ELA QV + + L G+ R + G R + QL Q DVL+ATPG
Sbjct: 205 LVPSRELAEQVRAVAQPLGISLGLRVRELGGGHGMNRIRVQLSK-QPPADVLVATPGALW 263
Query: 409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSP--------VTAQYL 456
+K ++ L L +LDE D L ++ E+ LQ S I+ P AQ +
Sbjct: 264 KALKSHLVSLKQLSFLVLDEADTLLDESFLELVDYILQKSHIAEDPDDLKDPFNPKAQLV 323
Query: 457 FVTATLPVEIYNKLVEVF-PDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
V AT P + L +V PD + +H I P + + + G ++K E +
Sbjct: 324 LVGATFPEGVSQLLSKVASPDSLTTITSSKLHCIMPHVRQTFMRLKG---AEKVTELVQI 380
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+ + P +VFCN T + IL D K +R+ + R
Sbjct: 381 LKQHD--RAYRTGPSGTILVFCNSSSTVNWLGYILD--DHKIQHLRL---QGQMPASMRA 433
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+ F K +R L+CTD ASRG+D V+ VV +DFP +Y
Sbjct: 434 GIFQCF----QKGSRDILLCTDIASRGLDSTHVELVVNYDFPLTLQDYIHRAGRVGRVGS 489
Query: 635 XXXKAFI-FVVGK-QVSLAQRI--MERNRKGHP 663
I FV VSL Q+I R R+ P
Sbjct: 490 EVPGTVISFVTHPWDVSLVQKIELAARRRRSLP 522
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 345 (126.5 bits), Expect = 7.3e-29, P = 7.3e-29
Identities = 127/423 (30%), Positives = 197/423 (46%)
Query: 266 SRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
SR SF +LG ++ +L+ ++P+ +Q+ PP++ G+ + A ++GSGKTL+YL
Sbjct: 124 SRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYL 183
Query: 324 LPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
LP+ QRL R +L S+S + +PR ++L P+ ELA QV + +SL + + + + G
Sbjct: 184 LPLFQRLLRGSDLD--SRSFT-APRGLVLVPSRELAEQVQAVAQSLGGY-LGLQVIELGG 239
Query: 383 GF---RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
G R K QL + DVL+ATPG +K ++ L +L +LDEVD L DE F
Sbjct: 240 GLGMSRLKLQLYR-RPAADVLVATPGALWKALKSQLISLQHLNFIVLDEVDTLL-DESFL 297
Query: 440 VALQSLISSSPVT-------------AQYLFVTATLPVEIYNKLVEVF-PDC-KVVMGPG 484
+ ++ SP+ AQ + V AT P + L +V PD +
Sbjct: 298 ELVDYILEKSPIAESPAELEDPFNPKAQLVLVGATFPEGLNQLLSKVTSPDSLTTITSSK 357
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
+H + P + + + G +DK E + K+ E P +VFCN T
Sbjct: 358 LHCLMPHVRQTFMRLKG---ADKVTELVQILKQQDKASKTE--PSGTVLVFCNSASTVNW 412
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
+ IL D K +R+ + R + F K ++ LVCTD ASRG+D
Sbjct: 413 LGYILD--DHKIQHLRL---QGQMPASMRAGIFQSF----QKGSQNILVCTDIASRGLDS 463
Query: 605 AGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFI-FVVGK-QVSLAQRI--MERNRK 660
V+ V+ +DFP +Y + I FV VSL Q+I R R+
Sbjct: 464 VHVEVVINYDFPPTLQDYIHRAGRVGRVGSEVPGSVISFVTHPWDVSLVQKIELAARRRR 523
Query: 661 GHP 663
P
Sbjct: 524 SLP 526
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 345 (126.5 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 121/412 (29%), Positives = 195/412 (47%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NFLR 290
RGW+ S + + + + + A + SR +F +LG ++ +L++ ++
Sbjct: 95 RGWKHRRS----RQDHFSIERVQQEAPAMRNLSSRGNFVDLGLEPRVLLALQKAVPEIVQ 150
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG--LSKSTSGSPRV 348
P+ +Q+ PP++ G+ + A ++GSGKTL+YLLP+ QRL L+G L +S +PR
Sbjct: 151 PTSVQSKTIPPLLRGRHILCAAETGSGKTLSYLLPLFQRL----LKGPELDSRSSTAPRG 206
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPG 405
++L P+ ELA QV + +SL + + + + + GG R K QL DVL+ATPG
Sbjct: 207 LVLVPSRELAEQVQAVAQSLGRY-LDLQVIELGGGLGMNRLKLQLGKWPSA-DVLVATPG 264
Query: 406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT------------- 452
+K ++ L +L +LDEVD L DE F + ++ SP+
Sbjct: 265 ALWKALKSQLISLHHLNFIVLDEVDTLL-DESFVELVDYILGKSPIAESPAELEDPFNPK 323
Query: 453 AQYLFVTATLPVEIYNKLVEVF-PDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPE 510
AQ + V AT P + L +V PD + +H I P + + + G ++K E
Sbjct: 324 AQLVMVGATFPEGLNQLLSKVTSPDSLTTITSSKLHCIMPHVRQTFMRLKG---TEKVTE 380
Query: 511 TAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
+ K+ E P +VFCN T + IL D K +R+ +
Sbjct: 381 LIQILKQHDKANKAE--PSGTVLVFCNSASTVNWLGYILD--DHKIQHLRL---QGQMPA 433
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R + F K ++ LVCTD ASRG+D V+ VV +DFP +Y
Sbjct: 434 SMRAGIFQSF----QKGSQNILVCTDIASRGLDSIHVEMVVNYDFPPTLQDY 481
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 165 KRSAMGKKTVNALKQEGRLSKTTPSLENFRELG 197
+RS ++ ++QE + S NF +LG
Sbjct: 100 RRSRQDHFSIERVQQEAPAMRNLSSRGNFVDLG 132
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 342 (125.4 bits), Expect = 1.7e-28, P = 1.7e-28
Identities = 137/458 (29%), Positives = 205/458 (44%)
Query: 228 GTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ- 286
G K R R SI Q E P R K S+ G SF +LG ++ +L+
Sbjct: 96 GWKSRRARRDHFSIERAQQE---APAVR-KLSSKG------SFADLGLEPRVLHALQEAA 145
Query: 287 -NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345
++P+ +Q+ P ++ G+ + A ++GSGKTL+YLLP++QRL + L +
Sbjct: 146 PEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPLLQRLLGQP--SLDSLPIPA 203
Query: 346 PRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIAT 403
PR ++L P+ ELA QV + + L + G+ R + G R+ + QL Q DVL+AT
Sbjct: 204 PRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSR-QPSADVLVAT 262
Query: 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSPVT------- 452
PG +K ++ L L +LDE D L ++ E+ L+ S I+ P
Sbjct: 263 PGALWKALKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLEDPFNP 322
Query: 453 -AQYLFVTATLPVEIYNKLVEVF-PDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
AQ + V AT P + L +V PD + +H I P +++ + G +DK
Sbjct: 323 KAQLVLVGATFPEGVGQLLNKVASPDAVTTITSSKLHCIMPHVKQTFLRLKG---ADKVA 379
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E + K + P +VFCN T + IL D K +R+ AL
Sbjct: 380 ELVHILKHRDRAE--RTGPSGTVLVFCNSSSTVNWLGYILD--DHKIQHLRLQGQMPAL- 434
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXX 629
R+ + F K +R L+CTD ASRG+D GV+ VV +DFP +Y
Sbjct: 435 --MRVGIFQSF----QKSSRDILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIHRAGRV 488
Query: 630 XXXXXXXXKAFI-FVVGK-QVSLAQRI--MERNRKGHP 663
I FV VSL Q+I R R+ P
Sbjct: 489 GRVGSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLP 526
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 337 (123.7 bits), Expect = 3.6e-28, P = 3.6e-28
Identities = 105/360 (29%), Positives = 179/360 (49%)
Query: 269 SFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
SF++ G + ++ +++ F +PS IQ+ +P ++ G+ CI Q+GSGKTLA+LLP +
Sbjct: 84 SFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPAL 143
Query: 328 QRLRQE--ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ + + + + SP V++L+PT ELA Q+ + S G ++S+ + GG
Sbjct: 144 LHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNG--YKSVCLYGGGS 201
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+E + GV+++IATPGR L +G++ L ++ +LDE D + D FEVA++ +
Sbjct: 202 RPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRML-DMGFEVAIRRI 260
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC-SGDQE 504
+ +AT P E KL + + + VM ++ L+ L C S Q
Sbjct: 261 LFEIRPDRLVALTSATWP-EGVRKLTDKYTK-EAVMA-----VNGSLD--LTSCKSVTQF 311
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVS--KTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ P + + ++ + + K I+F V +++ F K + L
Sbjct: 312 FEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMA---DHLSSDFCMKGINSQGL 368
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R ++ RS E ++ LV TD ASRGID + HV+ +DFP D EY
Sbjct: 369 --HGGRSQSDREMSLNML---RSGEVQI-LVATDLASRGIDVPDITHVLNYDFPMDIEEY 422
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 272 (100.8 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 67/199 (33%), Positives = 105/199 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + L ++ P+ +QA P V+ G+ + +GSGKT A+ LP++Q
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RL E + KS +G R ++L PT ELA QV + S S + + GG
Sbjct: 70 RL--SEAKSADKS-AGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+++L+ G DVL+ATPGR + L+ L+L + +LDE D + + F L+ +++
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLS-LGFTEELEQVLA 185
Query: 448 SSPVTAQYLFVTATLPVEI 466
+ P Q L +AT P E+
Sbjct: 186 ALPRQKQTLLFSATFPEEV 204
Score = 105 (42.0 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 502 DQESDKTPETAFLNK--KSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
+QES +N+ K+ALL LI++ S+ ++F + TC ++ ++ ++
Sbjct: 223 EQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCN---HLAQKLSKRGIS 279
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
V FH Q R + F ++ E + L+ TD A+RGID + V+ FD PR
Sbjct: 280 AEV--FHGDKAQGARTRVLDGF---KNGEISV-LIATDIAARGIDIDKLPVVINFDLPRS 333
Query: 619 PSEY 622
P++Y
Sbjct: 334 PADY 337
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 272 (100.8 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 67/199 (33%), Positives = 105/199 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + L ++ P+ +QA P V+ G+ + +GSGKT A+ LP++Q
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RL E + KS +G R ++L PT ELA QV + S S + + GG
Sbjct: 70 RL--SEAKSADKS-AGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVN 126
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+++L+ G DVL+ATPGR + L+ L+L + +LDE D + + F L+ +++
Sbjct: 127 LQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLS-LGFTEELEQVLA 185
Query: 448 SSPVTAQYLFVTATLPVEI 466
+ P Q L +AT P E+
Sbjct: 186 ALPRQKQTLLFSATFPEEV 204
Score = 105 (42.0 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 502 DQESDKTPETAFLNK--KSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
+QES +N+ K+ALL LI++ S+ ++F + TC ++ ++ ++
Sbjct: 223 EQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCN---HLAQKLSKRGIS 279
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
V FH Q R + F ++ E + L+ TD A+RGID + V+ FD PR
Sbjct: 280 AEV--FHGDKAQGARTRVLDGF---KNGEISV-LIATDIAARGIDIDKLPVVINFDLPRS 333
Query: 619 PSEY 622
P++Y
Sbjct: 334 PADY 337
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 288 (106.4 bits), Expect = 9.5e-28, Sum P(2) = 9.5e-28
Identities = 92/315 (29%), Positives = 149/315 (47%)
Query: 241 IHNL-QYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAM 297
+H++ QY+ + ++R + + G + +F + Y+++ L +QNF P+ IQA
Sbjct: 66 VHHMSQYDVEEYRRKR-EITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQ 124
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
FP + G+ + Q+GSGKTLAYLLP I + + L + P ++LAPT EL
Sbjct: 125 GFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPY--LERGDG--PICLVLAPTREL 180
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
A QV K +S V GG + Q+ +L+ GV++ IATPGR + ++ G
Sbjct: 181 AQQVQQVAFDYGKSS-RIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTN 239
Query: 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477
L +LDE D + D FE ++ ++ Q L +AT P E+ +L E F
Sbjct: 240 LRRCTYLVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV-RQLAEDFLQD 297
Query: 478 KVVMGPGMHRISPGLEEF-LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFC 536
V + G +S +VD + E D NK L++ I +KTI+F
Sbjct: 298 YVQINIGALELSANHNILQIVDVCMENEKD--------NKLIQLMEEIMAEKENKTIIFV 349
Query: 537 NKIVTCRKVENILKR 551
C ++ ++R
Sbjct: 350 ETKKRCDELTRRMRR 364
Score = 100 (40.3 bits), Expect = 9.5e-28, Sum P(2) = 9.5e-28
Identities = 39/150 (26%), Positives = 65/150 (43%)
Query: 516 KKSALLQLIEK---SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
K + L+QL+E+ +KTI+F + T ++ + + +R R + H Q
Sbjct: 326 KDNKLIQLMEEIMAEKENKTIIF---VETKKRCDELTRRMRRDGWPAMCI--HGDKSQPE 380
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXX 632
R + EF RS +A + L+ TD ASRG+D V V+ +D+P +Y
Sbjct: 381 RDWVLTEF---RSGKAPI-LIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARS 436
Query: 633 XXXXXKAFIFVVG--KQVSLAQRIMERNRK 660
F G +Q R++E R+
Sbjct: 437 TNKGTAYTFFTPGNLRQARDLVRVLEEARQ 466
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 251 (93.4 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 67/227 (29%), Positives = 116/227 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ FK+LG +++++ F P+ IQ A P ++EG + + +G+GKT AYLLPV+
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+++ + +V+I+ PT ELA QV L K + R++ V GG +
Sbjct: 62 QRIQRGK----------KAQVLIVTPTRELALQVADEVAKLGKY-LKVRALAVYGGQAIE 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GV+V++ TPGR + I ++ ILDE D + D F ++++++
Sbjct: 111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEML-DMGFIDDIEAILN 169
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
+ Q L +ATLP I + + K V G + P + +
Sbjct: 170 TLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ 216
Score = 128 (50.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 33/114 (28%), Positives = 57/114 (50%)
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
PET K L+ ++ + IVFC T ++V+ ++++ + + + L H +
Sbjct: 222 PET---EKIEGLVSILNSELPIQAIVFCR---TKKRVDEVVEQLNFRGYAAKGL--HGDM 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q R +K F +++ LV TD A+RG+D V HV+ FD P++P Y
Sbjct: 274 SQRERTQTIKSFKAGKTE----LLVATDVAARGLDIPDVSHVINFDIPQNPESY 323
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 251 (93.4 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 67/227 (29%), Positives = 116/227 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ FK+LG +++++ F P+ IQ A P ++EG + + +G+GKT AYLLPV+
Sbjct: 2 EEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+++ + +V+I+ PT ELA QV L K + R++ V GG +
Sbjct: 62 QRIQRGK----------KAQVLIVTPTRELALQVADEVAKLGKY-LKVRALAVYGGQAIE 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GV+V++ TPGR + I ++ ILDE D + D F ++++++
Sbjct: 111 RQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEML-DMGFIDDIEAILN 169
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
+ Q L +ATLP I + + K V G + P + +
Sbjct: 170 TLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQ 216
Score = 128 (50.1 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 33/114 (28%), Positives = 57/114 (50%)
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
PET K L+ ++ + IVFC T ++V+ ++++ + + + L H +
Sbjct: 222 PET---EKIEGLVSILNSELPIQAIVFCR---TKKRVDEVVEQLNFRGYAAKGL--HGDM 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q R +K F +++ LV TD A+RG+D V HV+ FD P++P Y
Sbjct: 274 SQRERTQTIKSFKAGKTE----LLVATDVAARGLDIPDVSHVINFDIPQNPESY 323
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 279 (103.3 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 97/343 (28%), Positives = 167/343 (48%)
Query: 136 NNDCSIP-SKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
+ND ++ +KK I + K ++ K +++ + + ++ LK E S++ E+
Sbjct: 14 SNDNNLKKTKKNSI--IKKKKKKKKKEILENKDS----NIDNLKNENYRSESEAESESTN 67
Query: 195 E---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEP-TD 250
+ L DN++ E+ + N ++ N NK+ K+ + H+ + TD
Sbjct: 68 DSVSLNNIEEDNELN-ENSENNENNENDEDNKNNKNNENNENTSSEEICDHDKNDKTYTD 126
Query: 251 CPKQR---HKYSADGD-FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
K H + + F+S F+EL D + + LK NF+ ++IQA P + GK
Sbjct: 127 EIKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGK 186
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+ A ++GSGKTLA+L+P I L ++ L K+ +G V+I++PT EL Q+ C+
Sbjct: 187 DILGAAKTGSGKTLAFLVPSINILYN--IKFLPKNGTG---VLIISPTRELCLQIYQVCK 241
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF---MFLIKEGILQLINLRC 423
L K +P + ++ GG + + + G+++LIATPGR M KE I + NL C
Sbjct: 242 DLCKY-IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYK--NLIC 298
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
I+DE D L FE + +I P Q +AT ++
Sbjct: 299 LIIDEADRLLQI-GFEEEINLIIKRLPKKRQTALFSATQTTKV 340
Score = 106 (42.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 29/125 (23%), Positives = 55/125 (44%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF N ++ + ++L D + H Q RL + +
Sbjct: 382 LFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYID-----IPTYCIHGKKKQNKRLKSFHD 436
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKA 639
F+ ++ L+CT+ A+RG+D V++++ +D P D EY A
Sbjct: 437 FSAAKCA----ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSA 492
Query: 640 FIFVV 644
IF++
Sbjct: 493 IIFLM 497
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 279 (103.3 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 97/343 (28%), Positives = 167/343 (48%)
Query: 136 NNDCSIP-SKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
+ND ++ +KK I + K ++ K +++ + + ++ LK E S++ E+
Sbjct: 14 SNDNNLKKTKKNSI--IKKKKKKKKKEILENKDS----NIDNLKNENYRSESEAESESTN 67
Query: 195 E---LGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEP-TD 250
+ L DN++ E+ + N ++ N NK+ K+ + H+ + TD
Sbjct: 68 DSVSLNNIEEDNELN-ENSENNENNENDEDNKNNKNNENNENTSSEEICDHDKNDKTYTD 126
Query: 251 CPKQR---HKYSADGD-FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
K H + + F+S F+EL D + + LK NF+ ++IQA P + GK
Sbjct: 127 EIKSNNSDHNNNNSKEHFYSELKFEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGK 186
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+ A ++GSGKTLA+L+P I L ++ L K+ +G V+I++PT EL Q+ C+
Sbjct: 187 DILGAAKTGSGKTLAFLVPSINILYN--IKFLPKNGTG---VLIISPTRELCLQIYQVCK 241
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF---MFLIKEGILQLINLRC 423
L K +P + ++ GG + + + G+++LIATPGR M KE I + NL C
Sbjct: 242 DLCKY-IPQTNGIIIGGMSRNEEKKKFIHGINILIATPGRLLDHMQNTKEFIYK--NLIC 298
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
I+DE D L FE + +I P Q +AT ++
Sbjct: 299 LIIDEADRLLQI-GFEEEINLIIKRLPKKRQTALFSATQTTKV 340
Score = 106 (42.4 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 29/125 (23%), Positives = 55/125 (44%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF N ++ + ++L D + H Q RL + +
Sbjct: 382 LFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYID-----IPTYCIHGKKKQNKRLKSFHD 436
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKA 639
F+ ++ L+CT+ A+RG+D V++++ +D P D EY A
Sbjct: 437 FSAAKCA----ILLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSA 492
Query: 640 FIFVV 644
IF++
Sbjct: 493 IIFLM 497
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 264 (98.0 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 66/194 (34%), Positives = 101/194 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++++++ + P+ +QA A P +E + Q+G+GKT A++LP +Q
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG + PRV++L PT ELA QV R+ + RS + GG
Sbjct: 62 RLSSPP-QGPGRG----PRVLVLTPTRELAQQVTDAVRTYGAF-MRVRSGAILGGMPYHA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L VD ++ATPGR + L+ L L L +LDE D + D F + + ++
Sbjct: 116 QLRLLSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRML-DMGFSDDVDRIAAA 174
Query: 449 SPVTAQYLFVTATL 462
SP T Q L TAT+
Sbjct: 175 SPATRQTLLFTATM 188
Score = 113 (44.8 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 42/157 (26%), Positives = 65/157 (41%)
Query: 514 LNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
L+ K+ LL+ LI + + I+F T R EN+ + L H + Q
Sbjct: 228 LHHKNRLLRHLITDESLRRAIIFS---ATKRDAENLALELKAQGHSAAAL--HGDMPQ-- 280
Query: 573 RLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXX 631
N + T + K+ R+ LV TD A+RG+D G+ HV+ FD P+ +Y
Sbjct: 281 ---NARNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGR 337
Query: 632 XXXXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
A F +V+ RI + P H +P
Sbjct: 338 AGASGI-AISFASLNEVNYLARIERYIGQTLPEHHIP 373
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 270 (100.1 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 74/242 (30%), Positives = 123/242 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G ++ +++++ + P+ IQ A P ++ G Q+G+GKT A++LP+IQ
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ + PR +IL PT ELA+QV N K + ++ GG K
Sbjct: 65 RL------STGRARARMPRCLILCPTRELAAQVAENFEKYGKY-LKLTMALLIGGVSFKE 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q LQ GVDVLIATPGR M G L ++ + I+DE D + D F ++ + +
Sbjct: 118 QETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRML-DMGFIPDIEKICAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDC-SGDQESD 506
P Q L +AT P +I +L + F D K + + + + +F+V + D ++
Sbjct: 177 LPANRQTLLFSATFPTDI-QRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKAR 235
Query: 507 KT 508
+T
Sbjct: 236 RT 237
Score = 111 (44.1 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 36/116 (31%), Positives = 51/116 (43%)
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K P +++AL ++IE + V IVFCN RKVE + + P H
Sbjct: 226 KLPTNDGKARRTALRRVIEATNVKNGIVFCN-----RKVEVDIVAASLTKHGHDAAPIHG 280
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
L Q R ++ F + K LV +D A+RG+D V HV F P +Y
Sbjct: 281 DLPQSVRSETLQRFRDGKLK----LLVASDVAARGLDIPDVGHVFNFGPPPKDEDY 332
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 279 (103.3 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 67/200 (33%), Positives = 111/200 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ L + +P+ IQA A P V G+ I +GSGKT + LP++Q
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+LR++ G SK++ G+ ++L PT ELA QV + +S + +++ V GG
Sbjct: 69 KLREDISSG-SKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSV 127
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVD+L+ATPGR + LI ++L ++ +LDE D + + F L +L+
Sbjct: 128 NIQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLS-LGFTEELTALL 186
Query: 447 SSSPVTAQYLFVTATLPVEI 466
+ +P Q L +AT P ++
Sbjct: 187 ALTPKKKQTLLFSATFPEQV 206
Score = 92 (37.4 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 28/107 (26%), Positives = 52/107 (48%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L LI++ + ++F N C E++ ++ ++ V FH Q R
Sbjct: 242 KTAVLAHLIQQEQWRQALIFVNAKHHC---EHLAEKLAKRGITAAV--FHGDKGQSERSR 296
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ F ++ + + L+ TD A+RG+D + V+ F+ PR PS+Y
Sbjct: 297 VLDGF---KAGDIEV-LIATDIAARGLDIEKLPVVINFNLPRSPSDY 339
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 285 (105.4 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 70/204 (34%), Positives = 109/204 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ + ++ ++ + P+ IQA A PP++EG I Q+G+GKT AY LPVIQ
Sbjct: 2 SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ LS + G R ++LAPT ELA Q+ + RSL + R + GG
Sbjct: 62 KM-------LS-TPRGRVRTLVLAPTRELACQIAESFRSLGQ-RARIRECSIYGGVNMDQ 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDV++A PGR + I G + + + I+DE D +F D F+ +QS++
Sbjct: 113 QIRRLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMF-DMGFQPDIQSILKC 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE 472
Q L +AT+P E+ +E
Sbjct: 172 LVQPHQTLLFSATMPPEVRKLTLE 195
Score = 95 (38.5 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 29/107 (27%), Positives = 45/107 (42%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L+++++ + ++F T EN+ R L L Q R A
Sbjct: 226 KTPLLIEILKTTETKSVLIFAR---TKYGAENLADEISRAGFTTASL--QGNLSQNRRHA 280
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
M+ F K LV TD A+RG+D + HV+ +D P P +Y
Sbjct: 281 VMEGFRRGNFK----ILVATDIAARGLDIDHISHVINYDMPDTPEDY 323
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 312 (114.9 bits), Expect = 4.1e-27, P = 4.1e-27
Identities = 91/315 (28%), Positives = 157/315 (49%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK + +I+ + + + +P+ IQ P ++ G + Q+G+GKT A+ LP+I +
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +KST R +IL PT ELASQ++ N S G+ ++ VV GG ++ Q
Sbjct: 64 FGRNKIDIKAKST----RSLILTPTRELASQIMQNIDDYSD-GLGLKTKVVYGGVGRQAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++++ G+D+L+ATPGR + LI+ G + L +LDE D + D F +QS+IS
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTML-DMGFFKDVQSIISKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ--ESDK 507
P + Q L +AT+P EI E+ + ++ P +I+ E +D DK
Sbjct: 178 PKSRQTLLFSATMPAEI-----EILAEA-ILTDPTKIQITA--ETVTIDLVNQSVYHLDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE-TRVRVLPFHA 566
+ NK L ++ K+ K ++FC T + I+K ++ T +
Sbjct: 230 S------NKVPLLFNILTKADYEKVLIFCK---TKYGADIIVKALEKASITAASLHSGKT 280
Query: 567 ALDQETRLANMKEFT 581
+E L N K+ T
Sbjct: 281 QAVREEALQNFKDST 295
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 271 (100.5 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 67/194 (34%), Positives = 100/194 (51%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++E+L+ + F RP+ IQA A PP ++G+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV + R L+K +TGG
Sbjct: 65 HLLD-----FPRKKSGPPRILILTPTRELAMQVSDHARELAK-HTHLDIATITGGVAYMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E E D+++AT GR + IKE + ILDE D + D F ++ +
Sbjct: 119 HAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIEHIAGE 177
Query: 449 SPVTAQYLFVTATL 462
+ Q L +ATL
Sbjct: 178 TRWRKQTLLFSATL 191
Score = 101 (40.6 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 36/110 (32%), Positives = 48/110 (43%)
Query: 514 LNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
L K+ALL + K P +++IVF K ++ N L+ E + + Q
Sbjct: 232 LEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLR-----EAGINNCYLEGEMVQGK 286
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R +K T R LV TD A+RGID V HV FD PR Y
Sbjct: 287 RNEAIKRLTEGRVN----VLVATDVAARGIDIPDVSHVFNFDMPRSGDTY 332
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 335 (123.0 bits), Expect = 6.2e-27, P = 6.2e-27
Identities = 106/359 (29%), Positives = 170/359 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E ++IE +KRQ F +P+ IQ+ +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297
Query: 329 RLRQEE--LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
+ + ++G G P ++LAPT ELA Q+ S R C R + GG
Sbjct: 298 HIGNQPPIIRG-----EG-PIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSS 351
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L GV+V+IATPGR + ++ L +LDE D + D FE ++ +
Sbjct: 352 KVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRML-DMGFEPQIRKI 410
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG--LEEFLVDCSGDQ 503
I Q + +AT P E+ L F + + + G +S + + + C+ +
Sbjct: 411 IEQIRPDRQVVMWSATWPKEV-QALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIE 469
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + LN+ S + +K IVF + T KVE+IL+ R E
Sbjct: 470 KPQRL--VCLLNEISPIKNSGNNG--NKIIVF---VETKIKVEDILQII-RAEG-YNATS 520
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + +K+F +S L+ TD ASRG+D + +V+ +D+P Y
Sbjct: 521 IHGDKTQNERDSVLKDFRNGKSN----ILIATDVASRGLDVEDLQYVINYDYPNSSENY 575
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 265 (98.3 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 75/280 (26%), Positives = 135/280 (48%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L ++ +L+ F + IQA + P +++G+ I ++GSGKT A+ L V+
Sbjct: 5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + + ++L PT ELA QV ++ R+L + + + + GG
Sbjct: 65 NLNVKRFR---------VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ G +L+ TPGR + + + + L L +LDE D + + F+ AL+++I++
Sbjct: 116 QIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML-EMGFQEALEAIIAA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q L +AT P I V + ++ H S + ++ G D+
Sbjct: 175 APAERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEA 233
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
ET L+ + P S ++VFCN T R+V+N+
Sbjct: 234 LETLLLHHQ----------PTS-SVVFCN---TKREVQNV 259
Score = 107 (42.7 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 523 LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
L+ P S ++VFCN T R+V+N+ ++ V+ H ++Q R + +F
Sbjct: 238 LLHHQPTS-SVVFCN---TKREVQNVADALH--QSGFSVIELHGDMEQRERDQALVQFA- 290
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+K + LV TD A+RG+D +D V +D RDP
Sbjct: 291 --NKSISI-LVATDVAARGLDVDNLDAVFNYDLSRDP 324
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 286 (105.7 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 89/300 (29%), Positives = 147/300 (49%)
Query: 171 KKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESI-DKNISDYNSRSNKHEKSGT 229
+KTV LK + S TT + N + + DND E + ++ + N++EK
Sbjct: 95 RKTVKKLKADDDKSVTTKTTNNNKSKKSNNNDNDDDDEEVNEEEEEEEEEEDNENEKEIN 154
Query: 230 KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFL 289
K + + + ++ K + + +F+EL S +++++++ F
Sbjct: 155 KKQQQQQQQSNKQTTDKIKVLQSNRKLKKIVEEEL---PTFEELHLSRPLLKAVQKLGFS 211
Query: 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL--RQEELQGLSKSTSGSPR 347
+P+ IQA A P + GK + + +GSGKT A+LLPV++RL R E + + R
Sbjct: 212 QPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAI--------R 263
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
V+IL PT ELA Q S +L++ S ++ GG K Q L++ DV+IATPGR
Sbjct: 264 VLILLPTRELALQCQSVMENLAQFS-NITSCLIVGGLSNKAQEVELRKSPDVVIATPGRL 322
Query: 408 M-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
+ L+ + L +L ILDE D L D F+ + ++ S P Q + +ATL E+
Sbjct: 323 IDHLLNAHGIGLDDLEILILDEADRLL-DMGFKDEINKIVESCPTNRQTMLFSATLNDEV 381
Score = 95 (38.5 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 32/122 (26%), Positives = 55/122 (45%)
Query: 502 DQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+QE K ++ + LL L + TI+FC ++ I D K +
Sbjct: 408 EQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAEL- 466
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H L QE R ++++F R + +L+ +D ASRG+D GV V+ ++ P + +
Sbjct: 467 ----HGNLSQEQRFDSLQQF---RDGQVN-YLLASDVASRGLDIIGVKTVINYNMPNNMA 518
Query: 621 EY 622
Y
Sbjct: 519 NY 520
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 332 (121.9 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 104/395 (26%), Positives = 199/395 (50%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS-DYMIESLKRQNFLRPSQIQAMA 298
S+ N++ + T CPK K+S +LG S D M+ ++ +F + IQ+ A
Sbjct: 239 SLDNIKIKGTGCPKPVTKWS------------QLGLSTDTMVLITEKLHFGSLTPIQSQA 286
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P ++ G+ I ++GSGKT++YLLP++++++ + + LSK +G P +ILAPT ELA
Sbjct: 287 LPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQ--RPLSKHETG-PMGLILAPTRELA 343
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI--KEG-I 415
Q+ ++ RS+ TGG K Q+ +L+ G ++++ATPGRF+ ++ +G +
Sbjct: 344 LQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKL 403
Query: 416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF- 474
L + ++DE D LF D FE + ++ + Q + +AT P ++ + V V
Sbjct: 404 LSTKRITFVVMDEADRLF-DLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLH 462
Query: 475 -PDCKVVMGPGMHRISPGLEE-FLVDCSGDQESDKTPETAFLNKKSALLQLI--EKSPVS 530
P + GM ++ +++ F + S D++ D + ++++S + E S
Sbjct: 463 SPISITINSKGM--VNENVKQKFRICHSEDEKFDNLVQ--LIHERSEFFDEVQSENDGQS 518
Query: 531 KTIVFCN-KIVTCRKVENILKRFDRKETRVRVLP--FHAALDQETRLANMKEFTTSRSKE 587
+ + K + +NI +K ++ HA + RL N+++F +E
Sbjct: 519 SDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKF----KRE 574
Query: 588 ARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
L+CT+ SRG++ V V++++ + ++Y
Sbjct: 575 KNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQY 609
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 256 (95.2 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 78/288 (27%), Positives = 140/288 (48%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
P R++ + D F++ ++ + + F RPS IQ + P + G+ +
Sbjct: 116 PDTRYR-TEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILAR 174
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GKT A+ +PV++++ Q+ + + VI+ PT ELA Q C+ L K
Sbjct: 175 AKNGTGKTAAFCIPVLEKIDQD---------NNVIQAVIIVPTRELALQTSQVCKELGK- 224
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ + MV TGG K + L + V +L+ TPGR + L K+G+ L + ++DE D
Sbjct: 225 HLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADK 284
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG 491
L + E F+ +++ LIS P + Q L +AT PV + + F D + + P + +
Sbjct: 285 LLSQE-FQPSVEHLISFLPESRQILMFSATFPVTVKD-----FKD-RFLTNPYVINL--- 334
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKI 539
++E + G + E K L L K ++++I+FCN +
Sbjct: 335 MDELTL--KGITQFYAFVEER--QKIHCLNTLFSKLQINQSIIFCNSV 378
Score = 118 (46.6 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 33/107 (30%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L K ++++I+FCN + +VE + K+ E HA + Q+ R
Sbjct: 355 KIHCLNTLFSKLQINQSIIFCNSV---NRVELLAKKIT--ELGYSCFYIHAKMLQDHRNR 409
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP++ Y
Sbjct: 410 VFHDFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPKNAETY 452
Score = 39 (18.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 201 VDNDVPAESIDKNISDYNSR 220
V+ V +E ID N D+ +R
Sbjct: 91 VEKTVQSEVIDPNSEDWKAR 110
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 281 (104.0 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 65/194 (33%), Positives = 110/194 (56%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++ SL + + P+ IQ A P V++G+ + Q+G+GKTLA+ P++ R
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + T RV++LAPT ELA Q+ ++ + G+ R ++V GG + Q
Sbjct: 69 LSRNASPAPVRGT----RVLVLAPTRELAGQIATSFGTYG-AGLNLRVVMVCGGAKIGGQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ G +L+ATPGR + L+++ + L + ILDE D + D F AL+++ +
Sbjct: 124 IRQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQML-DLGFIHALRAIAKNV 182
Query: 450 PVTAQYLFVTATLP 463
P Q LF +AT+P
Sbjct: 183 PSKRQTLFFSATMP 196
Score = 87 (35.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K S L++ I + IVF T + ++KR + + + + H Q R
Sbjct: 237 KASLLIEKIRDPELRSAIVFTR---TKHGADGVVKRLAKAD--IDSVAIHGNKSQSQREK 291
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ F R LV TD A+RGI + HV+ +D P P ++
Sbjct: 292 ALEAFKAGRVP----ILVATDIAARGIHVDALTHVINYDLPDVPEQF 334
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 264 (98.0 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 67/194 (34%), Positives = 103/194 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G ++ +++ F P+QIQ A P + G I + ++GSGKTLA+++P +QR
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + LSK PRVVIL PT ELA QV S R L ++++++ GG Q
Sbjct: 63 LSKN--RALSKR---DPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ+ + ++ATPGR + +G L L ILDE D + D F L + ++
Sbjct: 117 VKVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRML-DLGFSKELTQINKAA 175
Query: 450 PVTA-QYLFVTATL 462
Q L +ATL
Sbjct: 176 DHRKRQTLLFSATL 189
Score = 105 (42.0 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 514 LNKKSALLQ---LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
L +K ALLQ + EKS + I+F T + + K E + + L+Q
Sbjct: 230 LTQKEALLQHFLVTEKS--QQIIIFT---ATRSDTDRLAKLLT--EQNLNAVALSGELNQ 282
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R M+ F+ + K LV TD ASRG+D V HV+ FD P+ E+
Sbjct: 283 GQRNQIMESFSKGQHK----ILVTTDLASRGLDLINVSHVINFDMPKHTEEF 330
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 264 (98.0 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 67/194 (34%), Positives = 103/194 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G ++ +++ F P+QIQ A P + G I + ++GSGKTLA+++P +QR
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + LSK PRVVIL PT ELA QV S R L ++++++ GG Q
Sbjct: 63 LSKN--RALSKR---DPRVVILTPTRELAKQVFSQLR-LFTANTQYKAVLILGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ+ + ++ATPGR + +G L L ILDE D + D F L + ++
Sbjct: 117 VKVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRML-DLGFSKELTQINKAA 175
Query: 450 PVTA-QYLFVTATL 462
Q L +ATL
Sbjct: 176 DHRKRQTLLFSATL 189
Score = 105 (42.0 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 36/112 (32%), Positives = 52/112 (46%)
Query: 514 LNKKSALLQ---LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
L +K ALLQ + EKS + I+F T + + K E + + L+Q
Sbjct: 230 LTQKEALLQHFLVTEKS--QQIIIFT---ATRSDTDRLAKLLT--EQNLNAVALSGELNQ 282
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R M+ F+ + K LV TD ASRG+D V HV+ FD P+ E+
Sbjct: 283 GQRNQIMESFSKGQHK----ILVTTDLASRGLDLINVSHVINFDMPKHTEEF 330
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 271 (100.5 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 66/199 (33%), Positives = 104/199 (52%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F E G Y++ +K Q F +P+ IQ+ +P + G+ + ++GSGKTL+Y LP I
Sbjct: 140 ETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAI 199
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L + P V+ILAPT ELA Q+ + K R+ V GG +
Sbjct: 200 VHINAQPLL----APGDGPIVLILAPTRELAVQIQAEISKFGKSS-RIRNTCVYGGVPKG 254
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +L GV+V IATPGR + +++ G L + +LDE D + D FE ++ +IS
Sbjct: 255 PQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRML-DMGFEPQIRKIIS 313
Query: 448 SSPVTAQYLFVTATLPVEI 466
Q +AT P E+
Sbjct: 314 QIRPDRQTCMWSATWPKEV 332
Score = 104 (41.7 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 30/102 (29%), Positives = 52/102 (50%)
Query: 521 LQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580
L+ I ++ +K +VF +++ + + RF R++ L H Q+ R + EF
Sbjct: 379 LEKIMENRGNKCLVFTGT----KRIADEITRFLRQDGWP-ALSIHGDKQQQERDWVLNEF 433
Query: 581 TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
T +S +V TD ASRGID + HV+ +D+P + +Y
Sbjct: 434 KTGKSP----IMVATDVASRGIDVRDITHVINYDYPNNSEDY 471
Score = 41 (19.5 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 580 FTTSRSKEARLFLVCTDRASRGID 603
FTT +K+AR + A + ID
Sbjct: 491 FTTDNAKQARDLVTILSEAKQQID 514
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 265 (98.3 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 62/185 (33%), Positives = 105/185 (56%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S+K+ F +P+ IQ+ A+P V++G I Q+G+GKTL+YL+P L Q +
Sbjct: 235 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS---QPV 291
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C S G+ +S+ + GG +K Q++++ +GVD
Sbjct: 292 SRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL--KSVCIYGGGNRKGQIQDIMKGVD 349
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L ++ +LDE D + D FE + ++ Q +
Sbjct: 350 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTIMT 408
Query: 459 TATLP 463
+AT P
Sbjct: 409 SATWP 413
Score = 111 (44.1 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 32/108 (29%), Positives = 52/108 (48%)
Query: 516 KKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+S + ++ SP K IVF ++ + + + D + V H +Q R
Sbjct: 455 KRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSS-----DLSIQGIPVQSLHGDREQSDRE 509
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F T + K L+ TD ASRG+D + V HV ++FPR+ EY
Sbjct: 510 RALDDFKTGKVK----ILIATDLASRGLDVSDVTHVFNYNFPRNIEEY 553
Score = 42 (19.8 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 220 RSNKHEKSGTKIDRGWRSGGS 240
R+++H + G RGW S S
Sbjct: 18 RASQHGRDGRGRGRGWSSTSS 38
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 274 (101.5 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 68/193 (35%), Positives = 104/193 (53%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C ++E++K+ F +P+ IQ+ A+P V++G I Q+G+GKTL YL+P L
Sbjct: 249 CYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---V 305
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
LQ K P +++L PT ELA QV C S G+ RS+ V GG + Q+E L+
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGL--RSVCVYGGGNRDEQIEELK 363
Query: 395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
+GVD++IATPGR L + L N+ +LDE D + D FE + ++ Q
Sbjct: 364 KGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKML-DMGFEPQIMKILLDVRPDRQ 422
Query: 455 YLFVTATLPVEIY 467
+ +AT P ++
Sbjct: 423 TVMTSATWPHSVH 435
Score = 102 (41.0 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 32/96 (33%), Positives = 45/96 (46%)
Query: 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586
S K IVF ++ + V + L D + V H +Q R ++ F T + +
Sbjct: 485 SSTDKVIVFVSR----KAVADHLSS-DLILGNISVESLHGDREQRDREKALENFKTGKVR 539
Query: 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
L+ TD ASRG+D V HV FDFPR+ EY
Sbjct: 540 ----ILIATDLASRGLDVHDVTHVYNFDFPRNIEEY 571
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 267 (99.0 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 63/198 (31%), Positives = 102/198 (51%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G +Y+++ +K+ F P+ IQ A+P + G+ + +GSGKTL+Y LP I
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L S P V++LAPT ELA Q+ C K R+ V GG +
Sbjct: 183 HINAQPLL----SPGDGPIVLVLAPTRELAVQIQQECTKFGKSS-RIRNTCVYGGVPRGP 237
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GV++ IATPGR + ++ L + +LDE D + D FE ++ ++
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRML-DMGFEPQIRKIVDQ 296
Query: 449 SPVTAQYLFVTATLPVEI 466
Q + +AT P E+
Sbjct: 297 IRPDRQTVMFSATWPKEV 314
Score = 106 (42.4 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 35/117 (29%), Positives = 56/117 (47%)
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
D + A L K ++ + K +K ++F ++V + + RF R++ L H
Sbjct: 349 DNADKRARLGKD---IEEVLKDRDNKVLIFTGT----KRVADDITRFLRQDGWP-ALAIH 400
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ R + EF T +S +V TD ASRGID G+ HV +DFP + +Y
Sbjct: 401 GDKAQDERDWVLNEFRTGKSP----IMVATDVASRGIDVKGITHVFNYDFPGNTEDY 453
Score = 39 (18.8 bits), Expect = 2.1e-26, Sum P(3) = 2.1e-26
Identities = 16/61 (26%), Positives = 20/61 (32%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSAD 261
DN+ K YNSR RG GG Y + R+ Y +D
Sbjct: 5 DNEYSGNYNGKE-DGYNSRGRYGGGYRNNYSRGGGRGGFNDGASYGYDQRGQGRNFYESD 63
Query: 262 G 262
G
Sbjct: 64 G 64
Score = 37 (18.1 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 580 FTTSRSKEARLFLVCTDRASRGID 603
FT+ +K+AR + A + ID
Sbjct: 473 FTSDNAKQARELVSILSEAKQDID 496
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 268 (99.4 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 77/283 (27%), Positives = 133/283 (46%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY++ +K + F +P+ IQ +P + G+ + +GSGKTL+Y LP I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++LAPT ELA Q+ + C R+ V GG +
Sbjct: 174 HINAQPLL----APGDGPIVLVLAPTRELAVQIQTECSKFGHSS-RIRNTCVYGGVPKSQ 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G +++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 229 QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 287
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ + D +V +G S + + + S ++ D+
Sbjct: 288 IRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDR 347
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK 550
LNK L+ + KT++F + C + L+
Sbjct: 348 ------LNK---YLETASQDNEYKTLIFASTKRMCDDITKYLR 381
Score = 104 (41.7 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL 590
KT++F + T R ++I K +E L H DQ R ++EF RS
Sbjct: 362 KTLIFAS---TKRMCDDITKYL--REDGWPALAIHGDKDQRERDWVLQEFRNGRSP---- 412
Query: 591 FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+V TD A+RGID G+++V+ +D P + +Y
Sbjct: 413 IMVATDVAARGIDVKGINYVINYDMPGNIEDY 444
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 226 (84.6 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 69/213 (32%), Positives = 110/213 (51%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
D + KSF ELG S + ++ +R +++PS+IQ A P ++GK I ++GSGKT
Sbjct: 37 DEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTG 96
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
A+ +PV+Q L Q ++L PT ELA Q+ +L G+ + V+
Sbjct: 97 AFAIPVLQSLLDHP-QAFF--------CLVLTPTRELAFQIGQQFEALGS-GIGLIAAVI 146
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDF 438
GG Q L +++ATPGR + ++ +G L L+ I+DE D + N DF
Sbjct: 147 VGGVDMAAQAMALARRPHIIVATPGRLVDHLENTKGF-NLKALKFLIMDEADRILN-MDF 204
Query: 439 EVALQSLISSSPVTAQ-YLFVTATLPVEIYNKL 470
EV L ++ P + YLF +AT+ ++ +KL
Sbjct: 205 EVELDKILKVIPRERRTYLF-SATMTKKV-SKL 235
Score = 147 (56.8 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K++ L+ L+ + + IVFC T ++ +L++ ++ +P H + QE RL
Sbjct: 270 KETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLG-----MQAVPLHGQMSQEKRLG 324
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ +F +SK AR LVCTD A+RG+D VD V+ +D P +Y
Sbjct: 325 SLNKF---KSK-AREILVCTDVAARGLDIPHVDMVINYDMPSQSKDY 367
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 328 (120.5 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 96/340 (28%), Positives = 168/340 (49%)
Query: 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
F +PS IQ+ A P ++ G+ I ++GSGKTL+Y+LP+++ ++ ++ SK G P
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQF---SKDNQG-PI 369
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
+IL+PT ELA Q+ + +K R GG + Q+ L++GV++++ TPGR
Sbjct: 370 GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRV 429
Query: 408 MFLIKEGILQLINL-RCA--ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
+ L+ +++NL RC +LDE D +F D FE + +++ Q + +AT P
Sbjct: 430 IDLLAANSGRVLNLKRCTFVVLDEADRMF-DLGFEPQVNKILTQIRPDRQTVLFSATFPR 488
Query: 465 EIYNKLVEVFPDCKVVMGPGMHRISPGL-EEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
++ ++ D V++ G+ ++P + +E ++ + +E DK + L
Sbjct: 489 KMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNY 548
Query: 524 IEKSPVSKTIVFCNKIVTCRK-VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
+ P SK +VF K + V N+L + + H DQ R +KEF +
Sbjct: 549 QIEHPDSKILVFTEKQNDADELVANLLSN------KYPAIAIHGGKDQMDRKYAIKEFAS 602
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
S L+ T A+RG+D + V+ FD P +Y
Sbjct: 603 MDS--GINILIATSIAARGLDVRNLGLVINFDPPNHMEDY 640
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 328 (120.5 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 96/340 (28%), Positives = 168/340 (49%)
Query: 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
F +PS IQ+ A P ++ G+ I ++GSGKTL+Y+LP+++ ++ ++ SK G P
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQF---SKDNQG-PI 369
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
+IL+PT ELA Q+ + +K R GG + Q+ L++GV++++ TPGR
Sbjct: 370 GLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRV 429
Query: 408 MFLIKEGILQLINL-RCA--ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
+ L+ +++NL RC +LDE D +F D FE + +++ Q + +AT P
Sbjct: 430 IDLLAANSGRVLNLKRCTFVVLDEADRMF-DLGFEPQVNKILTQIRPDRQTVLFSATFPR 488
Query: 465 EIYNKLVEVFPDCKVVMGPGMHRISPGL-EEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
++ ++ D V++ G+ ++P + +E ++ + +E DK + L
Sbjct: 489 KMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRVEKLHDILTNY 548
Query: 524 IEKSPVSKTIVFCNKIVTCRK-VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
+ P SK +VF K + V N+L + + H DQ R +KEF +
Sbjct: 549 QIEHPDSKILVFTEKQNDADELVANLLSN------KYPAIAIHGGKDQMDRKYAIKEFAS 602
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
S L+ T A+RG+D + V+ FD P +Y
Sbjct: 603 MDS--GINILIATSIAARGLDVRNLGLVINFDPPNHMEDY 640
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 274 (101.5 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 69/216 (31%), Positives = 122/216 (56%)
Query: 253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
K+ K + + K+F+ L SD +S+K F R +QIQA A PP++ G+ + A
Sbjct: 139 KEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAA 198
Query: 313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
++GSGKTLA+L+P ++ L + + ++ +G V+++ PT ELA Q + L K
Sbjct: 199 RTGSGKTLAFLIPAVELLYRVKFT--PRNGTG---VLVICPTRELAIQSYGVAKELLKYH 253
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVD 430
V+ GG ++KT+ E L +GV++L+ATPGR + ++ G + NL+ ++DE D
Sbjct: 254 SQTVGKVI-GGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFI-FKNLKFLVMDEAD 311
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
+ +++FE L+ +++ P T Q +AT ++
Sbjct: 312 RIL-EQNFEEDLKKILNLLPKTRQTSLFSATQSAKV 346
Score = 99 (39.9 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 29/122 (23%), Positives = 54/122 (44%)
Query: 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL 590
K +VF + TC+ + + F + + L +DQ R +F + +
Sbjct: 402 KIMVFFS---TCKSTKFHAELF--RYIKFDCLEIRGGIDQNKRTPTFLQFIKAETG---- 452
Query: 591 FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSL 650
L+CT+ A+RG+DF VD +V +D P +P++Y KA + + +++
Sbjct: 453 ILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKF 512
Query: 651 AQ 652
Q
Sbjct: 513 IQ 514
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 275 (101.9 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 80/266 (30%), Positives = 127/266 (47%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ +++Q F +P+ IQA +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + L + P ++LAPT ELA Q+ R+ + GG + Q
Sbjct: 219 INNQPR--LERGDG--PIALVLAPTRELAQQIQQVAIEFGS-NTHVRNTCIFGGAPKGQQ 273
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV+++IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 274 ARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRML-DMGFEPQIRKIMQQI 332
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ +L E F + + + G +S L Q D
Sbjct: 333 RPDRQVLMWSATWPKEV-RQLAEEFLNNYIQVNIGSLSLSAN-HNIL------QIVDVCD 384
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVF 535
E L K LL I +KTI+F
Sbjct: 385 ENEKLMKLIKLLTDISAENETKTIIF 410
Score = 102 (41.0 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
D E L K LL I +KTI+F + T ++V+ I + R+ R + H
Sbjct: 381 DVCDENEKLMKLIKLLTDISAENETKTIIF---VETKKRVDEITRNISRQGWRACAI--H 435
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ R + F R LV TD A+RG+D V V+ +D+P + +Y
Sbjct: 436 GDKSQQERDFVLSSFRNGRHS----ILVATDVAARGLDVDDVKFVINYDYPSNSEDY 488
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 245 (91.3 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 69/254 (27%), Positives = 125/254 (49%)
Query: 213 NISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKE 272
N ++ ++ + E S + W++ L+ P P R++ +AD F++
Sbjct: 78 NANEVVQQTTQPEASSDANGQDWKA-----TLRLPP---PDTRYQ-TADVTATKGNEFED 128
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
+++ + + F +PS IQ + P + G + ++G+GKT A+ +PV++++
Sbjct: 129 YFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKI-- 186
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
+ + +IL PT ELA Q C+ LSK + + MV TGG + +
Sbjct: 187 -------DPNNNVIQAMILVPTRELALQTSQVCKELSKY-LNIQVMVTTGGTSLRDDIMR 238
Query: 393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
L + V +L+ TPGR + L K+G+ L + ++DE D L + E F+ +L+ LI P
Sbjct: 239 LHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAE-FQPSLEELIQFLPQN 297
Query: 453 AQYLFVTATLPVEI 466
Q+L +AT PV +
Sbjct: 298 RQFLMFSATFPVTV 311
Score = 125 (49.1 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 35/107 (32%), Positives = 50/107 (46%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L K ++++I+FCN + +VE + K+ E HA + Q+ R
Sbjct: 348 KVHCLNTLFSKLQINQSIIFCNSV---NRVELLAKKIT--ELGYSCFYIHAKMVQDHRNR 402
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
EF + LVCTD +RGID V+ V+ FDFPR Y
Sbjct: 403 VFHEFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPRTSESY 445
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 324 (119.1 bits), Expect = 4.1e-26, P = 4.1e-26
Identities = 102/360 (28%), Positives = 168/360 (46%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ + + +++R +++P+ +Q A P + G+ + Q+GSGKT A+ P+I
Sbjct: 147 TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIIS 206
Query: 329 RLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ +++ + G P VIL+PT ELA Q+ R S + GV + +V GG
Sbjct: 207 GIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV--KVVVAYGGTPV 264
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVD+L+ATPGR L++ G + L +R LDE D + D FE ++ ++
Sbjct: 265 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRML-DMGFEPQIRKIV 323
Query: 447 SSS----PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
P Q + +AT P EI +L F + + G R+ + +
Sbjct: 324 QQMDMPPPGVRQTMLFSATFPREI-QRLASDFLSNYIFLAVG--RVGSSTDLIVQRVEFV 380
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+SDK + ++ A + + + T+VF +EN L T +
Sbjct: 381 HDSDK--RSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTI--- 435
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q+ R ++ F T R+ LV TD A+RG+D V HVV FD P D +Y
Sbjct: 436 --HGDRSQQEREVALRSFKTGRTP----ILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 489
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 266 (98.7 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 79/268 (29%), Positives = 128/268 (47%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL------RQ 332
++E++K F +P+ +Q + P V G+ + Q+GSGKT +L PV+ Q
Sbjct: 153 LLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQ 212
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLE 391
E QG P VI+APT ELA+Q+ + + + V ++ VV GG QL
Sbjct: 213 PESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWV--KACVVYGGSPIGNQLR 270
Query: 392 NLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451
++ G D+L+ATPGR L++ G + L N++ +LDE D + D FE ++ ++ +
Sbjct: 271 EIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRML-DMGFEPQIRHIVEDCDM 329
Query: 452 TA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
T Q L +AT P +I + L F + + G V + + + K
Sbjct: 330 TPVGERQTLMFSATFPADIQH-LARDFLSDYIFLSVGR-----------VGSTSENITQK 377
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVF 535
+KKSALL L+ S T++F
Sbjct: 378 VLYVENQDKKSALLDLLSASTDGLTLIF 405
Score = 106 (42.4 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 35/108 (32%), Positives = 50/108 (46%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
+KKSALL L+ S T++F + T R + + + R + H Q R
Sbjct: 385 DKKSALLDLLSASTDGLTLIF---VETKRMADQLTDFLIMQNFRATAI--HGDRTQSERE 439
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ F RS A L LV T A+RG+D V HV+ +D P D +Y
Sbjct: 440 RALAAF---RSGAATL-LVATAVAARGLDIPNVTHVINYDLPSDVDDY 483
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 265 (98.3 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 62/185 (33%), Positives = 105/185 (56%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S+K+ F +P+ IQ+ A+P V++G I Q+G+GKTL+YL+P L Q +
Sbjct: 226 LMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNS---QPV 282
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C S G+ +S+ + GG +K Q++++ +GVD
Sbjct: 283 SRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGL--KSVCIYGGGNRKGQIQDIMKGVD 340
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L ++ +LDE D + D FE + ++ Q +
Sbjct: 341 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTIMT 399
Query: 459 TATLP 463
+AT P
Sbjct: 400 SATWP 404
Score = 111 (44.1 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 32/108 (29%), Positives = 52/108 (48%)
Query: 516 KKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+S + ++ SP K IVF ++ + + + D + V H +Q R
Sbjct: 446 KRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSS-----DLSIQGIPVQSLHGDREQSDRE 500
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F T + K L+ TD ASRG+D + V HV ++FPR+ EY
Sbjct: 501 RALDDFKTGKVK----ILIATDLASRGLDVSDVTHVFNYNFPRNIEEY 544
Score = 37 (18.1 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 221 SNKHEKSGTKIDRGWRSGGS 240
+++H + G RGW S S
Sbjct: 11 NSQHGRDGRGRGRGWSSTSS 30
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 321 (118.1 bits), Expect = 4.6e-26, P = 4.6e-26
Identities = 123/456 (26%), Positives = 199/456 (43%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NF 288
+ RGW+ + + + +H+ A + S+ SF +LG ++ +L+
Sbjct: 93 VSRGWKH----RRARQDYFSIERAQHEAPALRNLSSKGSFADLGLEPRVLSALQEAAPEV 148
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
+RP+ +Q+ PP++ G+ + A ++GSGKTL Y+LP++QRL + L S +PR
Sbjct: 149 VRPTTVQSSTIPPLLRGRHILCAAETGSGKTLGYMLPLLQRLLGQP--SLYTSRIPAPRG 206
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPG 405
++L P+ ELA QV + + L + R + GG R + QL +VL+ATPG
Sbjct: 207 LVLVPSRELAEQVRAVAQPLGS-SLGLRVQELGGGHGMSRVRLQLSK-HPPAEVLVATPG 264
Query: 406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSPVT--------A 453
+K ++ L L +LDEVD L ++ E+ L+ S I+ P A
Sbjct: 265 ALWKALKGQLISLAQLSFLVLDEVDTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKA 324
Query: 454 QYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
Q + V AT P + L +V + +H I P +++ + G ++K E
Sbjct: 325 QLVLVGATFPEGVGQLLSKVASLDSLTTITSSKLHCIMPHVKQTFMRLKG---AEKVTEL 381
Query: 512 AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQE 571
+ K+ +VFCN T + IL D K +R+ +
Sbjct: 382 VQILKQHDRAH--RTGSTGTVLVFCNSSSTVNWLGYILD--DHKIQHLRL---QGQMPAS 434
Query: 572 TRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXX 631
R + F K +R L+CTD ASRG+D V+ V+ +DFP +Y
Sbjct: 435 MRAGIFQSF----QKGSRDILLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGR 490
Query: 632 XXXXXXKAFI-FVVGK-QVSLAQRI--MERNRKGHP 663
I FV VSL Q+I R R+ P
Sbjct: 491 VGSEVPGTVISFVTHPWDVSLVQKIELAARRRRSLP 526
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 252 (93.8 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 64/215 (29%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK + D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 72 PKDTRVRTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 131
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++R+ L K + ++L PT ELA QV ++SK
Sbjct: 132 AKNGTGKSGAYLIPLLERI------DLKKDYI---QAIVLVPTRELALQVSQISINMSKH 182
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L E V V+IATPGR + LIK+G+ ++ ++ A++DE D
Sbjct: 183 LGGIKVMATTGGTNLRDDIMRLDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADK 242
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF V ++ +IS P Q L +AT P+ +
Sbjct: 243 LLS-QDFVVLIEDIISFLPKKRQILLYSATFPISV 276
Score = 114 (45.2 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 32/107 (29%), Positives = 52/107 (48%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 313 KVHCLNTLFSRLQINQSIIFCN---STQRVELLAKKIT--QLGYSCFYIHAKMMQEYRNR 367
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP++ Y
Sbjct: 368 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKNAETY 410
Score = 40 (19.1 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 125 SQPTTSAPVLRNNDCSIPSKKGVI 148
S P+ PV+ SIP G I
Sbjct: 35 STPSGKTPVMPQKGSSIPQSSGGI 58
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 317 (116.6 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
Identities = 103/360 (28%), Positives = 172/360 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ + + +++R +++P+ +Q A P ++EG+ + Q+GSGKT A+ P+I
Sbjct: 160 TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIIS 219
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ +++ +Q S + P VIL+PT ELASQ+ + S + GV + +V GG
Sbjct: 220 GIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV--KVVVAYGGTPI 277
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
QL L+ GVD+L+ATPGR L++ + + +R LDE D + D FE ++ ++
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGFEPQIRKIV 336
Query: 447 SSSPV----TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ Q L +AT P EI +L F + + G R+ + +
Sbjct: 337 EQMDMPPRGVRQTLLFSATFPREI-QRLAADFLANYIFLAVG--RVGSSTDLIVQRVEFV 393
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+SDK + ++ A + + + T+VF +EN L T +
Sbjct: 394 LDSDK--RSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSI--- 448
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q+ R +K F + R+ LV TD A+RG+D V HVV FD P D +Y
Sbjct: 449 --HGDRTQQEREVALKAFKSGRTP----ILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 502
Score = 50 (22.7 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 117 SSNWNKDPSQPTTSAPVLRN 136
SSN N PS+P P LRN
Sbjct: 18 SSNQNSHPSRPAYVPPHLRN 37
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 318 (117.0 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 119/412 (28%), Positives = 189/412 (45%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK L + +++ SL +P+ IQ P +++G+ CI ++GSGKT+A+ +P++Q
Sbjct: 96 SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQ 155
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ G+ VIL PT ELA Q+ +++S + +++TGG ++
Sbjct: 156 KWAEDPF-GIF--------AVILTPTRELALQIFEQIKAIS-APQSMKPVLITGGTDMRS 205
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L V++ATPGR I + + L +R +LDE D L + D
Sbjct: 206 QAIELAGRPHVVVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDV 265
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L L P Q L TATL E+ + ++ P PG P + F+ +
Sbjct: 266 ETCLSFL--PGPSQRQTLLFTATLTPEV--RALKSMPQT-----PG----KPPI--FVTE 310
Query: 499 CSGDQESDKTP--ETAF----LNKKSALLQLI--EKSPVSKT-IVFCNKIVTCRKVENIL 549
S + + P T + L + A L ++ +S ++K+ IVF N + +E +L
Sbjct: 311 ISTEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLL 370
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
+ RV H+ L Q R +N+ F R+ AR+ LV TD ASRG+D V
Sbjct: 371 RSLGH-----RVTSLHSLLPQSERNSNLARF---RASAARV-LVATDVASRGLDIPSVSL 421
Query: 610 VVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIMER-NRK 660
VV F+ PR+P +Y +A V + V L I ER RK
Sbjct: 422 VVNFEVPRNPDDYVHRVGRTARAGRTG-EAVTLVGQRDVQLVLAIEERIGRK 472
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 249 (92.7 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 102/396 (25%), Positives = 184/396 (46%)
Query: 156 AQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHI-VDNDVPAESIDKNI 214
A+ K +K+ + K V+ + ++ + +E+ ++ E + D D A + +I
Sbjct: 2 AKTTKVKGNKKKSDTSKVVSKVSRKRSHEDSESEVEDNEKVVEELDADFDEVAGLLGDDI 61
Query: 215 SDYNSRS-NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273
D S+S +K EK K D + + E D S++ F F
Sbjct: 62 EDPESKSQSKKEKQKAK-DEAKLEQLTKPQVSNEVPD--NDNDDDSSEDVLFENADF--- 115
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
S+ ++++K F + +++QA PP++ G+ + A ++GSGKTLA+L+P I+ L
Sbjct: 116 --SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL 173
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQL 390
++ K +G+ V+I+ PT ELA Q+ R L + F S +V GG ++ +
Sbjct: 174 KI----KPRNGTA-VIIITPTRELALQIFGVARELMQ----FHSQTCGIVIGGADRRQEA 224
Query: 391 ENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450
L +GV++L+ATPGR + +K NL+ ++DE D + + FE ++ +I P
Sbjct: 225 TKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRIL-EIGFEDEMKQIIKVLP 283
Query: 451 -VTAQYLFVTATLPVEIYNKL-VEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESD 506
Q + +AT ++ + + + P + +S GLE+ V C +SD
Sbjct: 284 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVC----DSD 339
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVF---CNKI 539
K FL L ++++ K IVF CN +
Sbjct: 340 KR----FL----LLFSFLKRNVKKKIIVFLSSCNSV 367
Score = 120 (47.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 34/129 (26%), Positives = 55/129 (42%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++++ K IVF + + + +L D + VL H Q+ R E
Sbjct: 345 LFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYID-----LPVLDLHGKQKQQKRTNTFFE 399
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKA 639
F ++ LVCTD A+RG+D VD +V FD P DP +Y K+
Sbjct: 400 FCNAKQG----ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKS 455
Query: 640 FIFVVGKQV 648
+F+ ++
Sbjct: 456 LMFLTPSEL 464
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 249 (92.7 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 102/396 (25%), Positives = 184/396 (46%)
Query: 156 AQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHI-VDNDVPAESIDKNI 214
A+ K +K+ + K V+ + ++ + +E+ ++ E + D D A + +I
Sbjct: 2 AKTTKVKGNKKKSDTSKVVSKVSRKRSHEDSESEVEDNEKVVEELDADFDEVAGLLGDDI 61
Query: 215 SDYNSRS-NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKEL 273
D S+S +K EK K D + + E D S++ F F
Sbjct: 62 EDPESKSQSKKEKQKAK-DEAKLEQLTKPQVSNEVPD--NDNDDDSSEDVLFENADF--- 115
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
S+ ++++K F + +++QA PP++ G+ + A ++GSGKTLA+L+P I+ L
Sbjct: 116 --SEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL 173
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFRQKTQL 390
++ K +G+ V+I+ PT ELA Q+ R L + F S +V GG ++ +
Sbjct: 174 KI----KPRNGTA-VIIITPTRELALQIFGVARELMQ----FHSQTCGIVIGGADRRQEA 224
Query: 391 ENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450
L +GV++L+ATPGR + +K NL+ ++DE D + + FE ++ +I P
Sbjct: 225 TKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRIL-EIGFEDEMKQIIKVLP 283
Query: 451 -VTAQYLFVTATLPVEIYNKL-VEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESD 506
Q + +AT ++ + + + P + +S GLE+ V C +SD
Sbjct: 284 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVC----DSD 339
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVF---CNKI 539
K FL L ++++ K IVF CN +
Sbjct: 340 KR----FL----LLFSFLKRNVKKKIIVFLSSCNSV 367
Score = 120 (47.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
Identities = 34/129 (26%), Positives = 55/129 (42%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++++ K IVF + + + +L D + VL H Q+ R E
Sbjct: 345 LFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYID-----LPVLDLHGKQKQQKRTNTFFE 399
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKA 639
F ++ LVCTD A+RG+D VD +V FD P DP +Y K+
Sbjct: 400 FCNAKQG----ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKS 455
Query: 640 FIFVVGKQV 648
+F+ ++
Sbjct: 456 LMFLTPSEL 464
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 254 (94.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 78/266 (29%), Positives = 137/266 (51%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-VIQRLRQE 333
C ++ ++K+ F +P+ IQ+ A+P +++G I Q+G+GKTL+YL+P I Q
Sbjct: 248 CYPEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQP 307
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
+ L ++ +G P +++L PT ELA QV + C S G+ +S+ V GG + Q+++L
Sbjct: 308 VVFSLQRARNG-PGMLVLTPTRELALQVEAECSKYSYKGL--KSVCVYGGGDRDGQIKDL 364
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
+GVD++IATPGR L + L ++ +LDE D + D FE + ++
Sbjct: 365 LKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKML-DMGFEPQIMKILLDIRPDR 423
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
Q + +AT P + +L + + + P + + G + + + Q T E
Sbjct: 424 QTVMTSATWPYAV-RRLAQSY-----LKEPMI--VYVGTLDLVAVSTVKQNIIVTTED-- 473
Query: 514 LNKKSALLQLIEK-SPVSKTIVFCNK 538
K+S + IE SP K I+F ++
Sbjct: 474 -EKRSHIQTFIESMSPKDKVIIFVSR 498
Score = 116 (45.9 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 36/108 (33%), Positives = 52/108 (48%)
Query: 516 KKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+S + IE SP K I+F ++ + V + L D + V H +Q R
Sbjct: 475 KRSHIQTFIESMSPKDKVIIFVSR----KAVADHLSS-DLGIRHISVESLHGNREQGDRE 529
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+K F T + + L+ TD ASRG+D V HV +DFPR+ EY
Sbjct: 530 RALKNFKTGKVR----ILIATDLASRGLDVHDVTHVYNYDFPRNIEEY 573
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 257 (95.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 62/199 (31%), Positives = 111/199 (55%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP++
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++ S++T P++++LAPT ELA QV S +K F + + GG +
Sbjct: 66 NKVT-------SQTT---PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ ++
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWILE 174
Query: 448 SSPVTAQYLFVTATLPVEI 466
+P Q +AT+P +I
Sbjct: 175 HTPPQRQLALFSATMPEQI 193
Score = 112 (44.5 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 42/158 (26%), Positives = 71/158 (44%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
NK AL++++E I+F +C VE + ++ + + P H ++Q+ R
Sbjct: 230 NKLEALVRVLEVENTEGIIIFVRTRNSC--VE-LAEKLEARGYASS--PLHGDMNQQAR- 283
Query: 575 ANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXX 633
E + K +L L+ TD A+RG+D + HVV +D P D Y
Sbjct: 284 ----ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAG 339
Query: 634 XXXXKAFIFVVGKQVSLAQRIMER--NRKGHPLHDVPS 669
A +FV +++ + R +ER N + P+ VPS
Sbjct: 340 RTGM-AILFVTSREMRML-RTIERATNSRISPMK-VPS 374
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 266 (98.7 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 65/207 (31%), Positives = 107/207 (51%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK G + + + P+ IQA A P V+ G+ + Q+G+GKT A+ LP++ R
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+Q E G R +++APT ELA Q+ + +L + RS+ V GG Q
Sbjct: 63 LQQGE--------RGRVRALVIAPTRELAEQINDSFVTLGR-QTRLRSVTVYGGVGVNPQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G +V++A PGR + I +G + L L +LDE D +F D F ++ ++
Sbjct: 114 VQKLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMF-DMGFLPDIRRVLKHL 172
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT+P++I ++ D
Sbjct: 173 PPRRQTLLFSATMPIDIRTLAQDILVD 199
Score = 91 (37.1 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 37/149 (24%), Positives = 61/149 (40%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K LL+L+ + ++F T + + + ++ ++ R L L Q R A
Sbjct: 226 KTPLLLELLRHTDTESVLIFTR---TKHRAKRLGEQLEKAGYRAASL--QGNLSQNRRQA 280
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
+ F + LV TD A+RGID + V HV+ +D P D +E
Sbjct: 281 ALDGFRDGTFQ----ILVATDIAARGIDVSQVSHVINYDIP-DTAEAYIHRIGRTGRAAR 335
Query: 636 XXKAFIFVVGKQVSLAQRIMERNRKGHPL 664
AF V ++ R +ER+ G P+
Sbjct: 336 SGDAFTLVTSDDGAMV-RAIERSL-GAPI 362
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 235 (87.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 65/202 (32%), Positives = 106/202 (52%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F+ELG + +++ + K+ F PS IQA P +++G+ I + ++GSGKT ++ +P
Sbjct: 2 SDKTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIP 61
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGG 383
++ +L E+ G+ VIL PT ELA Q+ ++ G P VV GG
Sbjct: 62 ILNQL-SEDPYGVF--------AVILTPTRELAVQIGEQFNAI---GAPMNVNCSVVIGG 109
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFNDEDFEVAL 442
TQ L + +++ATPGR + G+ + L + +LDE D L EDFE+ +
Sbjct: 110 IDNVTQALILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLG-EDFELEI 168
Query: 443 QSLISS--SPVTAQYLFVTATL 462
S++ P Q L +AT+
Sbjct: 169 ASILEHLPPPEKRQTLLFSATM 190
Score = 128 (50.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 41/145 (28%), Positives = 64/145 (44%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L+ +++K S IVF N V+ +L + D + + H+ LDQ++RLA
Sbjct: 232 KDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLD-----IPSVSLHSFLDQKSRLA 286
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
+K F + + K LV TD ASRG+D V V+ + +Y
Sbjct: 287 ALKTFKSGKVK----VLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRS 342
Query: 636 XXKAFIFVVGKQVSLAQRIMERNRK 660
+A F+ VSL + I E +K
Sbjct: 343 G-RAISFITPHDVSLIKGIEEIIKK 366
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 279 (103.3 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 70/198 (35%), Positives = 106/198 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL +L+ GVD+LIATPGR + L L + +LDE D + D F LQ ++
Sbjct: 124 QLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML-DMGFMPDLQRVLRR 182
Query: 449 SPVTAQYLFVTATLPVEI 466
Q LF +AT +I
Sbjct: 183 LSPLRQTLFFSATFDSKI 200
Score = 70 (29.7 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
A K ++ + R L+ TD A+RG+D A ++ VV +D P +Y
Sbjct: 289 ARQKALDDFKAGKVRA-LIATDVAARGLDIAQLEQVVNYDMPFKAEDY 335
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 279 (103.3 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 70/198 (35%), Positives = 106/198 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ +L P+ IQ A P V++GK + Q+G+GKT A+ LP+IQ
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R ++ Q ++ S R ++L PT ELA QVL + ++ +K G + + V GG K
Sbjct: 67 RFIEQPWQ--REANSKEIRALVLVPTRELAQQVLDSLQAYAK-GTELKIVAVYGGTSMKV 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL +L+ GVD+LIATPGR + L L + +LDE D + D F LQ ++
Sbjct: 124 QLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML-DMGFMPDLQRVLRR 182
Query: 449 SPVTAQYLFVTATLPVEI 466
Q LF +AT +I
Sbjct: 183 LSPLRQTLFFSATFDSKI 200
Score = 70 (29.7 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
A K ++ + R L+ TD A+RG+D A ++ VV +D P +Y
Sbjct: 289 ARQKALDDFKAGKVRA-LIATDVAARGLDIAQLEQVVNYDMPFKAEDY 335
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 251 (93.4 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 58/185 (31%), Positives = 104/185 (56%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S++R F +P+ IQ+ ++P +++G I Q+G+GKTL+YL+P + Q +
Sbjct: 212 IMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHS---QPV 268
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C G+ +S+ + GG +K Q++++ +GVD
Sbjct: 269 SRKQRNGPGMLVLTPTRELALQVEAECSKYLYKGL--KSVCIYGGGNRKGQIQDVTKGVD 326
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L ++ +LDE D + D FE + ++ Q +
Sbjct: 327 IIIATPGRLNDLQMNNFVNLRSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTVMT 385
Query: 459 TATLP 463
TA+ P
Sbjct: 386 TASWP 390
Score = 114 (45.2 bits), Expect = 3.2e-25, Sum P(2) = 3.2e-25
Identities = 32/108 (29%), Positives = 54/108 (50%)
Query: 516 KKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+S + + ++ SP K IVF ++ + + + D + V H +Q R
Sbjct: 432 KRSLVKEFLQSLSPKDKVIVFVSRKLVADDLSS-----DLSIQGIPVQSLHGDREQSDRD 486
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+++F T R K L+ TD A+RG+D + V HV ++FPR+ EY
Sbjct: 487 QALEDFRTGRVK----ILIATDLAARGLDVSDVTHVYNYNFPRNIEEY 530
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 246 (91.7 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 58/192 (30%), Positives = 107/192 (55%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C ++ ++++ F +P+ IQ+ A+P +++G I Q+G+GKTL+YL+P + +
Sbjct: 248 CYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQP 307
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
+ L ++ +G P +++L PT ELA QV + C S G+ +S+ + GG + Q+++L
Sbjct: 308 V--LQRARNG-PGMLVLTPTRELALQVDAECSEYSYRGL--KSVCIYGGGDRDGQIKDLS 362
Query: 395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
+G D++IATPGR L + L ++ +LDE D + D FE + ++ Q
Sbjct: 363 KGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKML-DMGFEPQIMKILLDVRPDRQ 421
Query: 455 YLFVTATLPVEI 466
+ +AT P +
Sbjct: 422 TVMTSATWPYAV 433
Score = 120 (47.3 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 36/108 (33%), Positives = 53/108 (49%)
Query: 516 KKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+S + I+ SP K I+F ++ + V + L D R+ V H +Q R
Sbjct: 472 KRSHIQAFIDSMSPKDKVIIFVSR----KAVADHLSS-DLGIRRISVESLHGNREQSDRE 526
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+K F T + + L+ TD ASRG+D V HV +DFPR+ EY
Sbjct: 527 RALKSFKTGKVR----ILIATDLASRGLDVHDVTHVYNYDFPRNIEEY 570
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 248 (92.4 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 76/257 (29%), Positives = 128/257 (49%)
Query: 212 KNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKS-- 269
KN S NS S + +S + I + L+ P D R K S D S K
Sbjct: 45 KNASTINSGSQQQAQSMSSIIKPGDDWKK--TLKLPPKDL---RIKTS---DVTSTKGNE 96
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ ++ + + +PS IQ + P + G+ + ++G+GK+ AYL+P+++R
Sbjct: 97 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L K + +++ PT ELA QV C +SK + M TGG +
Sbjct: 157 L------DLKKDCI---QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD 207
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L + V V+IATPGR + LIK+G+ ++ +++ +LDE D L + +DF ++ +I +
Sbjct: 208 IMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLS-QDFMQIMEDIIMTL 266
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT P+ +
Sbjct: 267 PKNRQILLYSATFPLSV 283
Score = 111 (44.1 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 320 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 374
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 375 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 417
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 241 (89.9 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 84/284 (29%), Positives = 145/284 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+EL S ++++++ F + +QA PP++ G+ + A ++GSGKTLA+L+P I
Sbjct: 42 EKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 101
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGF 384
+ L + K +G+ ++++ PT ELA Q+ R L + F S +V GG
Sbjct: 102 ELLHSLKF----KPRNGTG-IIVITPTRELALQIFGVARELME----FHSQTFGIVIGGA 152
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVAL 442
++ + E L +GV++LIATPGR + ++ +G + NL+ I+DE D + + FE +
Sbjct: 153 NRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFV-FKNLKALIIDEADRIL-EIGFEDEM 210
Query: 443 QSLISSSPVTAQY--LF-VTATLPVEIYNKL-VEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ +I P + LF T T VE ++ + P V+ + + GLE+ V
Sbjct: 211 RQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVV 270
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF---CNKI 539
C +SDK FL L ++++ K IVF CN +
Sbjct: 271 C----DSDKR----FL----LLFSFLKRNQKKKIIVFLSSCNSV 302
Score = 120 (47.3 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 33/129 (25%), Positives = 55/129 (42%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++++ K IVF + + + +L D + VL H Q+ R E
Sbjct: 280 LFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID-----LPVLELHGKQKQQKRTNTFFE 334
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKA 639
F + R L+CTD A+RG+D VD ++ FD P DP +Y K+
Sbjct: 335 FCNAE----RGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKS 390
Query: 640 FIFVVGKQV 648
+F+ ++
Sbjct: 391 LMFLTPNEL 399
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 262 (97.3 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 62/185 (33%), Positives = 104/185 (56%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++ ++++ F +P+ IQ+ A+P +++G I Q+G+GKTLAYL+P L Q +
Sbjct: 64 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS---QPI 120
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K G P +++LAPT ELA QV + C + G F+S+ + GG +K Q+ + +GVD
Sbjct: 121 PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTKGVD 178
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L ++ +LDE D + D FE + ++ Q + +
Sbjct: 179 IVIATPGRLNDLQMNNFINLKSITYLVLDEADRML-DMGFEPQIMKILIDVRPDRQTVMM 237
Query: 459 TATLP 463
+AT P
Sbjct: 238 SATWP 242
Score = 93 (37.8 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
V V H +Q R + +F + + R+ LV TD ASRG+D + HV FDFPR+
Sbjct: 322 VPVQSLHGDREQCDREQALDDF---KKGKVRI-LVATDLASRGLDVHDITHVFNFDFPRN 377
Query: 619 PSEY 622
EY
Sbjct: 378 IEEY 381
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 244 (91.0 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 75/230 (32%), Positives = 115/230 (50%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSR---KSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
N + E ++ ++ + +GD + K+FKELG D + E+ ++ F P+ IQ A
Sbjct: 18 NKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR-VVILAPTAELA 358
P V+ + I Q+GSGKT A+ LPVIQ L SP V+LAPT ELA
Sbjct: 78 PVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP----------SPFFAVVLAPTRELA 127
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGIL 416
Q+ ++ + RS+V+ GG TQ L + VL+ TPGR M ++ +G
Sbjct: 128 YQISEQFEAIGG-SIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF- 185
Query: 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L NL+ I+DE D L D DF + ++ P + L +AT+ ++
Sbjct: 186 SLKNLKYLIMDEADRLL-DMDFGPIIDKILKIIPHERRTLLFSATMTSKV 234
Score = 114 (45.2 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 31/110 (28%), Positives = 52/110 (47%)
Query: 513 FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
F +K + L+ L+ + + I+F + +++ +L+ +P H L Q
Sbjct: 269 FKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLG-----FSAIPLHGQLSQSN 323
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
RL + +F + AR LV TD A+RG+D VD V+ +D P D Y
Sbjct: 324 RLGALNKFKSG----ARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 317 (116.6 bits), Expect = 4.9e-25, P = 4.9e-25
Identities = 123/458 (26%), Positives = 209/458 (45%)
Query: 190 LENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPT 249
+ F+ E + N + A +D I+ N + +KHE G + G I + E
Sbjct: 1 MSGFQTSDEVDISNSLKAFPVD--IATDNQK-DKHENVGENVSDE-DDGNYIASKLLESN 56
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
K + +G +F+ +G + ++ ++ ++ F P+ IQ P ++EG+ +
Sbjct: 57 RRTKGK---KGNG---KASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
Query: 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
++GSGKT A+++P+I+ L+ L+ S + R +IL+P ELA Q + + S
Sbjct: 111 GMARTGSGKTAAFVIPMIEHLKST----LANSNT---RALILSPNRELALQTVKVVKDFS 163
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
K G RS+ + GG + Q L D+++ATPGRF+ L E L+L ++ + DE
Sbjct: 164 K-GTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEA 222
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS 489
D LF + F L ++ + P + Q L +ATLP + + D +V ++S
Sbjct: 223 DRLF-EMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVS 281
Query: 490 PGLEE-FLVDCSGDQES-------D--KTP--------ETAFLN---KKSALLQLIEKSP 528
L+ F + ++E+ D K P E +N K+ L+L K
Sbjct: 282 ADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGS 341
Query: 529 VS----KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584
S T+VF + T VE + + + V + +LDQE RL + F +
Sbjct: 342 ESGSPDSTLVF---VPTKHHVEYVSELL--VQAGYSVSKIYGSLDQEARLNEINNFRLGK 396
Query: 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ LV TD ASRGID + +V+ +DFP P +
Sbjct: 397 TN----LLVVTDVASRGIDIPLLANVINYDFPPQPKVF 430
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 315 (115.9 bits), Expect = 5.4e-25, P = 5.4e-25
Identities = 113/441 (25%), Positives = 208/441 (47%)
Query: 197 GEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRH 256
G++ N++ A + S + +R + E+ ++ G SG I+ +YE + P +
Sbjct: 168 GQNTRWNNLDAPP-SRGTSKWENRGARDERIEQELFSGQLSG--INFDKYE--EIPVE-- 220
Query: 257 KYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
A GD + F +L +++ E++K + RP+ +Q + P + G+ + Q+
Sbjct: 221 ---ATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQT 277
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGS-------PRVVILAPTAELASQVLSNCRS 367
GSGKT A+L+P++ + Q+ + +S + S P ++L+PT EL+ Q+ + R
Sbjct: 278 GSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRK 337
Query: 368 LSKCGVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426
+ P S ++ GG K Q+ L+ G +LIATPGR + ++ +G++ + R +L
Sbjct: 338 FAY-RTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVL 396
Query: 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA----TLPVEIYNKLVEVFPDCKVVMG 482
DE D + D FE ++ ++ + + ++ +TA T P EI + + V +
Sbjct: 397 DEADRML-DMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLA 455
Query: 483 PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK-TIVFCNKIVT 541
G R+ E + +E +K +S L+ L++ + S T+VF + T
Sbjct: 456 VG--RVGSTSENIMQKIVWVEEDEK---------RSYLMDLLDATGDSSLTLVF---VET 501
Query: 542 CRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRG 601
R ++ +R+ V+ H L Q R ++ F T + LV T A+RG
Sbjct: 502 KRGASDLAYYLNRQN--YEVVTIHGDLKQFEREKHLDLFRTGTAP----ILVATAVAARG 555
Query: 602 IDFAGVDHVVLFDFPRDPSEY 622
+D V HV+ +D P D EY
Sbjct: 556 LDIPNVKHVINYDLPSDVDEY 576
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 239 (89.2 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 63/217 (29%), Positives = 110/217 (50%)
Query: 252 PKQRHKYSADGDFFSRKS--FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
P + ++Y + D + K F++ ++ + + F +PS IQ + P + G +
Sbjct: 137 PPRDNRYQTE-DVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDIL 195
Query: 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
++G+GKT A+ +P ++++ E + + VIL PT ELA Q C+ LS
Sbjct: 196 ARAKNGTGKTGAFCIPTLEKIDPE---------NNVIQAVILVPTRELALQTSQVCKELS 246
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
K + MV TGG + + L + V +L+ TPGR + L K+G+ L + ++DE
Sbjct: 247 KY-LKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEA 305
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
D L + E F+ +++ LI P + Q L +AT PV +
Sbjct: 306 DKLLSVE-FQPSIEELIQFLPESRQILMFSATFPVTV 341
Score = 122 (48.0 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 34/107 (31%), Positives = 50/107 (46%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L K ++++I+FCN + +VE + K+ E HA + Q+ R
Sbjct: 378 KVHCLNTLFSKLQINQSIIFCNSV---NRVELLAKKIT--ELGYSCFYIHAKMVQDHRNR 432
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFPR Y
Sbjct: 433 VFHDFRNGACRN----LVCTDLFTRGIDIQAVNVVINFDFPRTSESY 475
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 248 (92.4 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 63/215 (29%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 81 PKDLRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 140
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++R+ L K + + V++ PT ELA QV C +SK
Sbjct: 141 AKNGTGKSGAYLIPLLERI------DLKKDSIQA--AVVIVPTRELALQVSQICIQVSKH 192
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L E V V+IATPGR + LIK+G+ ++ ++ +LDE D
Sbjct: 193 MGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADK 252
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ ++SS Q L +AT P+ +
Sbjct: 253 LLS-QDFVQMMEEILSSLSKQRQILLYSATFPLSV 286
Score = 110 (43.8 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 323 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 377
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+F + LVCTD +RGID V+ V+ FDFP+
Sbjct: 378 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPK 415
>ASPGD|ASPL0000042587 [details] [associations]
symbol:AN1750 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:AACD01000027 EMBL:BN001307 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14805 HOGENOM:HOG000290702 RefSeq:XP_659354.1
ProteinModelPortal:Q5BCI0 STRING:Q5BCI0 PRIDE:Q5BCI0
EnsemblFungi:CADANIAT00008396 GeneID:2875695 KEGG:ani:AN1750.2
OMA:VEEGYFA OrthoDB:EOG44J5S7 Uniprot:Q5BCI0
Length = 770
Score = 229 (85.7 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 60/197 (30%), Positives = 106/197 (53%)
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
AD D +++ LG S + SL + F P+ +Q PP+++G I +GSGKT
Sbjct: 189 ADDDGADISAWEPLGLSPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKT 248
Query: 320 LAYLLPVIQR-LRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSL--SKCGVP 374
LA+ LP+++ L +E + + P +IL+PT ELA Q+ + L + GV
Sbjct: 249 LAFGLPILEHYLERERRKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVN 308
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG---ILQLINLRCAILDEVDI 431
R+ ++TGG + Q + L E D++I TPGR +++ G I ++ ++ ++DE D
Sbjct: 309 ARTALLTGGLSVQKQ-QRLLETADIVIGTPGRVWEVLRTGQGLIRRMQGIKFLVIDEADR 367
Query: 432 LFNDEDFEVALQSLISS 448
L ++ F+ ++ ++SS
Sbjct: 368 LLSEGHFK-EVEDILSS 383
Score = 138 (53.6 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 33/113 (29%), Positives = 59/113 (52%)
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E + K L L+ P +T+VF N I R++ +L+ ++ L H+++
Sbjct: 480 ECPAMEKDLYLYTLLLYHPKHRTLVFTNSISAVRRITQLLQTL-----QLPALALHSSMA 534
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ RL +++ F++S + + LV TD A+RG+D G+D V+ + PR Y
Sbjct: 535 QKARLRSVERFSSSTANPGTI-LVATDVAARGLDIKGIDFVIHYHAPRTADTY 586
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 243 (90.6 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
Identities = 68/202 (33%), Positives = 103/202 (50%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FKEL ++ES++ F +P+ IQ+ A P +EGK I Q+GSGKT A+ +P++
Sbjct: 123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L + + ++LAPT EL Q+ +L + RS + GG
Sbjct: 183 QSLWHAQQPYFA---------LVLAPTRELTFQIKDTFDALGS-SMGLRSSCIVGGMDMM 232
Query: 388 TQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q +L V++ATPGR M ++ +G L NL+ ++DE D L D DF AL +
Sbjct: 233 DQARDLMRKPHVIVATPGRIMDHLEHTKGF-SLKNLKYLVMDEADRLL-DMDFGPALDKI 290
Query: 446 ISSSPVT-AQYLF-VTATLPVE 465
+ P+ YLF T T +E
Sbjct: 291 LKVIPIKRTTYLFSATMTNKIE 312
Score = 117 (46.2 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L+ L+ + IVF + ++ +L R +P H L Q RL
Sbjct: 349 KNTILIHLLNEFMGKSIIVFTRTVAHAQRTA-LLARI----LGFNAVPLHGQLSQSQRLG 403
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ +F +S +A + LV TD A+RG+D VD V+ +D P D Y
Sbjct: 404 SLNKF---KSNQANI-LVATDVAARGLDIPSVDVVINYDIPTDSKAY 446
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 240 (89.5 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 66/229 (28%), Positives = 123/229 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L S+ ++K F +QIQA + P++EGK + A ++GSGKTLA+L+P ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E ++ +G V+++ PT ELA Q + L K SMV+ GG +++
Sbjct: 150 LLFKERFS--PRNGTG---VIVICPTRELAIQTKNVAEELLKHHSQTVSMVI-GGNNRRS 203
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLI-NLRCAILDEVDILFNDEDFEVALQSLIS 447
+ + + G +++IATPGR + ++ + +L+C ++DE D + +E+FE + ++
Sbjct: 204 EAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRIL-EENFEEDMNKILK 262
Query: 448 SSPVTAQYLFVTATLPVEIYNKL-VEVFPDCKVVMGPGMHRIS-PGLEE 494
P T Q +AT ++ + V + V + G +++ GLE+
Sbjct: 263 ILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQ 311
Score = 121 (47.7 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 36/132 (27%), Positives = 63/132 (47%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVE---NILKRFDRKETRVRVLPFHAALDQETRLAN 576
L+ ++K+ K +VF + TC+ V+ I+K D V V H +DQ R
Sbjct: 325 LISFLKKNLNKKIMVFFS---TCKSVQFHTEIMKISD-----VDVSDIHGGMDQNRRTKT 376
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXX 636
+F ++K+ L+CTD A+RG+D VD ++ +D P P+EY
Sbjct: 377 FFDFM--KAKKG--ILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAK 432
Query: 637 XKAFIFVVGKQV 648
KA + ++ +++
Sbjct: 433 GKALLVLIPEEL 444
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 312 (114.9 bits), Expect = 7.7e-25, P = 7.7e-25
Identities = 101/360 (28%), Positives = 170/360 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ++ D + +++R ++RP+ +Q A P ++ + + Q+GSGKT A+ P+I
Sbjct: 152 TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIIS 211
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQ 386
+ +++ ++ S + P VIL+PT ELA Q+ + S + GV + +V GG
Sbjct: 212 GIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV--KVVVAYGGTPI 269
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
QL L+ G D+L+ATPGR L++ + + +R LDE D + D FE ++ ++
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRML-DMGFEPQIRKIV 328
Query: 447 SSSPV----TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ Q + +AT P +I +L F + + G R+ +
Sbjct: 329 EQMDMPPRGVRQTMLFSATFPSQI-QRLAADFMSNYIFLAVG--RVGSSTDLITQRVEFV 385
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
QESDK + ++ A + +K S T+VF +EN L + T +
Sbjct: 386 QESDK--RSHLMDLLHAQRETQDKQ--SLTLVFVETKRGADTLENWLCMNEFPATSI--- 438
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q+ R ++ F T R+ LV TD A+RG+D V HVV FD P D +Y
Sbjct: 439 --HGDRTQQEREVALRSFKTGRTP----ILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 310 (114.2 bits), Expect = 8.0e-25, P = 8.0e-25
Identities = 121/453 (26%), Positives = 199/453 (43%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ--NFLR 290
RGW++ + + +++ + A + S+ SF +LG ++ +L+ +R
Sbjct: 95 RGWKN----RRARQDHFSIERKQQEAPALRNLSSKDSFADLGLEPRVLSALQEAAPEVVR 150
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P+ +Q+ PP++ G+ + A ++GSGKTL Y+LP++QRL + L +PR ++
Sbjct: 151 PTTVQSSTIPPLLGGRHILCAAETGSGKTLGYMLPLLQRLLGQP--SLDSCRIPAPRGLV 208
Query: 351 LAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGF-RQKTQLENLQEGVDVLIATPGRFM 408
L P+ ELA QV + + L S G+ R + G R + QL Q DVL+ATPG
Sbjct: 209 LVPSRELAEQVRAVAQPLGSSLGLQVRELGGGHGMSRIRLQLSK-QPPADVLVATPGALW 267
Query: 409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVA---LQ-SLISSSPVT--------AQYL 456
+K ++ L L +LDE D L ++ E+ L+ S I+ P AQ +
Sbjct: 268 KGLKSQLISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKAQLV 327
Query: 457 FVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
V AT P + L + + +H I P +++ + G ++K E +
Sbjct: 328 LVGATFPEGVSQLLSKAACLDSLTTITSSKLHCIMPHVKQTFMRLKG---AEKVTELVQI 384
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K+ + +VFCN T + IL D K +R+ + R
Sbjct: 385 LKQHD--RAYRTGSAGTVLVFCNSSSTVNWLGYILD--DHKIQHLRL---QGQMPASMRA 437
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+ F S++ L+CTD ASRG+D V+ V+ +DFP +Y
Sbjct: 438 GIFQSFQRG-SQD---ILLCTDIASRGLDSTQVELVINYDFPLTLQDYIHRAGRVGRVGS 493
Query: 635 XXXKAFI-FVVGK-QVSLAQRI--MERNRKGHP 663
I FV VSL Q+I R R+ P
Sbjct: 494 KVPGTVISFVTHPWDVSLVQKIELAARRRRSLP 526
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 264 (98.0 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 67/236 (28%), Positives = 116/236 (49%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG +++++ + P+ IQ A P ++ GK+ + A Q+G+GKT +++LP++ R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
K R +IL PT ELA QV N +K +P +M + GG Q
Sbjct: 63 FADAP-----KIRPKRVRSIILTPTRELALQVEQNINQYAKY-LPLTAMAMYGGVDAAPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVD+L+ATPGR + + + ++ + +LDE D + D F + ++I
Sbjct: 117 KKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRML-DMGFIEDINNIIEKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +ATL ++ PD + + S ++++L D++S
Sbjct: 176 PEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKS 231
Score = 89 (36.4 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 506 DKTPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
D+ T ++KSALL LI+++ ++ ++F I T ++ + +++ F
Sbjct: 219 DQWLTTVDKDRKSALLSHLIKENNWAQALIF---IQTKHGAAKLVSQLEKRGIVAEA--F 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H+ Q R + +F + FLV T SRGID ++ V+ +D P + +Y
Sbjct: 274 HSGRSQAIREQLLIDFKAGKVP----FLVATGVVSRGIDIDALERVINYDLPDEADDY 327
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 264 (98.0 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 67/236 (28%), Positives = 116/236 (49%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG +++++ + P+ IQ A P ++ GK+ + A Q+G+GKT +++LP++ R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
K R +IL PT ELA QV N +K +P +M + GG Q
Sbjct: 63 FADAP-----KIRPKRVRSIILTPTRELALQVEQNINQYAKY-LPLTAMAMYGGVDAAPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVD+L+ATPGR + + + ++ + +LDE D + D F + ++I
Sbjct: 117 KKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRML-DMGFIEDINNIIEKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +ATL ++ PD + + S ++++L D++S
Sbjct: 176 PEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKS 231
Score = 89 (36.4 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 506 DKTPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
D+ T ++KSALL LI+++ ++ ++F I T ++ + +++ F
Sbjct: 219 DQWLTTVDKDRKSALLSHLIKENNWAQALIF---IQTKHGAAKLVSQLEKRGIVAEA--F 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H+ Q R + +F + FLV T SRGID ++ V+ +D P + +Y
Sbjct: 274 HSGRSQAIREQLLIDFKAGKVP----FLVATGVVSRGIDIDALERVINYDLPDEADDY 327
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 276 (102.2 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/199 (31%), Positives = 112/199 (56%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ +++ + +P+ +Q A P V++G+ ++A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + S+ PRV++L PT ELA+QV + + ++ + F S + GG
Sbjct: 62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYAR-DLKFVSACIFGGVGMN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ + GVDVL+A PGR + L +G + L ++ +LDE D + D F ++ +++
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRML-DMGFVHDVKKVLA 179
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 180 RLPAKRQNLLFSATFSNDI 198
Score = 82 (33.9 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 27/108 (25%), Positives = 48/108 (44%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
+K+S L LI + +VF T + + D+ + + H Q R
Sbjct: 235 HKRSLLAHLITVGAWEQVLVFTR---TKHGANRLAEYLDKHG--LAAVAIHGNKSQNART 289
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F ++ + R+ +V TD A+RG+D + HVV F+ P +Y
Sbjct: 290 KALADF---KAGDVRI-MVATDIAARGLDIDQLPHVVNFELPNVDEDY 333
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 305 (112.4 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 72/197 (36%), Positives = 115/197 (58%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP++QR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G +K +S + R +IL PT ELA+Q+ + K + SMVV GG + Q
Sbjct: 68 LSSSK--G-NKVSSNNVRALILTPTRELAAQISESIEVYGKY-LNLHSMVVFGGVKINPQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++GVDVL+ATPGR + L + ++ L ILDE D + D F ++ L+++
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRML-DMGFIRDIKKLMTAL 182
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 183 PKDRQNLLFSATFSPEI 199
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 271 (100.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 65/197 (32%), Positives = 105/197 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G K + R +IL PT ELA+Q+ N + +P +S VV GG + Q
Sbjct: 63 LAK----G-PKVRANQVRALILTPTRELAAQIQDNVMLYGR-HLPLKSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + +G D+L+ATPGR M L + ++ L +LDE D + D F + ++
Sbjct: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRML-DMGFIRDIHKILKLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PEKRQNLLFSATFSTEI 192
Score = 78 (32.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L++L+++ + +VF ++ L E + H Q R
Sbjct: 230 KPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLN-----EQGLTAAAIHGNKSQGARTR 284
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F ++ E R+ LV TD A+RGID + VV F+ P+ +Y
Sbjct: 285 ALADF---KAGEVRI-LVATDIAARGIDIPQLPQVVNFELPKIAEDY 327
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 271 (100.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 65/197 (32%), Positives = 105/197 (53%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G K + R +IL PT ELA+Q+ N + +P +S VV GG + Q
Sbjct: 63 LAK----G-PKVRANQVRALILTPTRELAAQIQDNVMLYGR-HLPLKSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + +G D+L+ATPGR M L + ++ L +LDE D + D F + ++
Sbjct: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRML-DMGFIRDIHKILKLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PEKRQNLLFSATFSTEI 192
Score = 78 (32.5 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L++L+++ + +VF ++ L E + H Q R
Sbjct: 230 KPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLN-----EQGLTAAAIHGNKSQGARTR 284
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F ++ E R+ LV TD A+RGID + VV F+ P+ +Y
Sbjct: 285 ALADF---KAGEVRI-LVATDIAARGIDIPQLPQVVNFELPKIAEDY 327
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 244 (91.0 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 62/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE D
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>ZFIN|ZDB-GENE-041001-215 [details] [associations]
symbol:ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-041001-215
GO:GO:0005524 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
CTD:1653 KO:K13177 EMBL:BX649472 EMBL:BX005358 IPI:IPI00511501
RefSeq:NP_001184253.1 UniGene:Dr.19466 ProteinModelPortal:F1R2L8
Ensembl:ENSDART00000023963 GeneID:556790 KEGG:dre:556790
NextBio:20881663 ArrayExpress:F1R2L8 Bgee:F1R2L8 Uniprot:F1R2L8
Length = 740
Score = 182 (69.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 50/140 (35%), Positives = 73/140 (52%)
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGV 397
KS+S +PR +I+ P+ ELA Q L+N K R +++ GG K QL L+ GV
Sbjct: 281 KSSSNAPRALIIEPSKELAEQTLNNVNQFKKYVDNPKLRELLIIGGVAAKEQLNVLESGV 340
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN--DEDFEVALQSLI---SSSPVT 452
D+++ TPGR LI G L L +R +LDE D L + + DF + + + I +S
Sbjct: 341 DIVVGTPGRLDDLISTGKLDLSQVRFLVLDECDGLLSAGNTDFIMRIYNQIPQVTSDGKR 400
Query: 453 AQYLFVTATLPVEIYNKLVE 472
Q + +ATL KL E
Sbjct: 401 LQVIVCSATLHSFDVKKLSE 420
Score = 115 (45.5 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E ++ L + G V
Sbjct: 63 -IVYETIKDLQEGKKGRSAV 81
Score = 114 (45.2 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVEN-ILKRF---DRKE 556
G + E + K ++ I++ + + I+FC + C +E +K+ D+K
Sbjct: 478 GANSPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIKQGGGPDKKG 537
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ + H R N++ F + +E + FL+CTD A+RGID GV +V+ P
Sbjct: 538 HQFSCVCLHGDRKPNERKYNLERF---KKQEVK-FLICTDVAARGIDVRGVPYVINVTLP 593
Query: 617 RDPSEY 622
+ Y
Sbjct: 594 DEKENY 599
>FB|FBgn0086130 [details] [associations]
symbol:KH1 "KH1" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016063 "rhodopsin
biosynthetic process" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
EMBL:AY058512 RefSeq:NP_608544.1 UniGene:Dm.4179 SMR:Q9VPT3
EnsemblMetazoa:FBtr0078009 GeneID:33254 KEGG:dme:Dmel_CG3561
UCSC:CG3561-RA CTD:33254 FlyBase:FBgn0086130 InParanoid:Q9VPT3
OMA:ILCSAET OrthoDB:EOG4X69R7 GenomeRNAi:33254 NextBio:782677
Uniprot:Q9VPT3
Length = 536
Score = 308 (113.5 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 106/380 (27%), Positives = 175/380 (46%)
Query: 301 PVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359
PVV G C++A ++G GKT+ YLLP++ +L Q+E+ +++ +PRV+IL P ELA+
Sbjct: 141 PVVHGNEHCLIAAETGCGKTITYLLPIVDKLLQKEV--VTERKLNTPRVLILTPGRELAT 198
Query: 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
Q+ L++ G + + GG ++ + E VD+L+AT G L+ GI ++
Sbjct: 199 QIAGVTEKLTQ-GTNLKVQSLLGGNTKQLMMNPQFEEVDILVATLGALSKLVTTGIYRME 257
Query: 420 NLRCAILDEVDILFND---EDFEVALQS----LISSSPVTAQYLFVTATLPV---EIYNK 469
+R +LDE D L +D + L+ L+ Q + +AT+P EI +K
Sbjct: 258 QVRHLVLDEADTLLDDTFTDKLSYFLRRFPFHLVQKEDAGTQMILASATMPTNTREILHK 317
Query: 470 LVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV 529
+++V + V+ P +HR+ + + + S ++D+ P T K L ++ P+
Sbjct: 318 VIDV-DTIREVVSPHLHRLMSHVTQKFLRLS---KADR-PATLLSLVKH---DLAKRRPL 369
Query: 530 SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEAR 589
IVF NK T V L + V L + + + RL ++F
Sbjct: 370 ---IVFSNKSTTSDFVSIFLNN-----SGVNCLNLNGDMLMKIRLGRFEQFQNGHCD--- 418
Query: 590 LFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVG--KQ 647
L TD SRG+D HVV FDFP S+Y ++ ++
Sbjct: 419 -VLSTTDVGSRGLDTTRARHVVNFDFPLHVSDYIHRCGRIGRVGNMDKALVTNLISSRRE 477
Query: 648 VSLAQRIMERNRKGHPLHDV 667
+ + QRI R G L DV
Sbjct: 478 IDVVQRIEHAARTGGLLPDV 497
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 243 (90.6 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 64/224 (28%), Positives = 115/224 (51%)
Query: 252 PKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
PK+ + D D + K +F++ ++ + F +PS IQ A P + G+ +
Sbjct: 29 PKKDTRPQTD-DVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 87
Query: 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
++G+GKT A+++P +++++ + L+K + +I+ PT ELA Q R+L
Sbjct: 88 ARAKNGTGKTAAFVIPTLEKVKPK----LNKI-----QALIMVPTRELALQTSQVVRTLG 138
Query: 370 K-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
K CG+ MV TGG + + L E V +L+ TPGR + L + L + I+DE
Sbjct: 139 KHCGIS--CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 196
Query: 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472
D + + DF+ ++ ++S P T Q L +AT P+ + +V+
Sbjct: 197 ADKMLS-RDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVK 239
Score = 113 (44.8 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 34/107 (31%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L K +++ I+FCN + +VE + K+ + HA + Q+ R
Sbjct: 270 KLHCLNTLFSKLQINQAIIFCN---STNRVELLAKKIT--DLGYSCYYSHARMKQQERNK 324
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
EF R + R LVC+D +RGID V+ V+ FDFP+ Y
Sbjct: 325 VFHEF---RQGKVRT-LVCSDLLTRGIDIQAVNVVINFDFPKTAETY 367
Score = 113 (44.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 28/123 (22%), Positives = 59/123 (47%)
Query: 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSD 277
N+ N + S T +DR W++ +I P K + DF+ ++
Sbjct: 5 NNNFNTNNNSNTDLDRDWKTALNIPKKDTRPQTDDVLNTKGNTFEDFYLKRE-------- 56
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE--EL 335
++ + F +PS IQ A P + G+ + ++G+GKT A+++P +++++ + ++
Sbjct: 57 -LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI 115
Query: 336 QGL 338
Q L
Sbjct: 116 QAL 118
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 252 (93.8 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 62/185 (33%), Positives = 101/185 (54%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E++ R F +P+ IQ+ A+P V+ G I Q+G+GKTLAYLLP + + Q +
Sbjct: 289 IMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHM---DGQPM 345
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+ P +++L PT ELA Q+ + C S G F+S+ + GG + Q++ + GVD
Sbjct: 346 PRDKRNGPGMLVLTPTRELALQIEAECNKYSYKG--FKSICIYGGGDRNAQIKVVTSGVD 403
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L ++ L ++ +LDE D + D FE + +I Q +
Sbjct: 404 IVIATPGRLNDLQMNELINLRSITYLVLDEADRML-DMGFEPQIMKIILDIRPDRQTVMT 462
Query: 459 TATLP 463
+AT P
Sbjct: 463 SATWP 467
Score = 111 (44.1 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 45/172 (26%), Positives = 79/172 (45%)
Query: 465 EIYNKLVEVFPDCKVVMG-----PGMHRISPG-LEEFLVDCSG--DQESDKTPETAFL-- 514
+I ++++ PD + VM PG+ R++ L++ ++ G D + T + L
Sbjct: 445 QIMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFV 504
Query: 515 ---NKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
KK + I + P+ K ++F K + K +++ D + V H +Q
Sbjct: 505 QEDEKKDYVFDFIHRMEPLDKVLIFVGKKL---KADDLSS--DLCLQGIAVQSLHGDREQ 559
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R +++F R + LV TD ASRG+D + HV +DFPR+ EY
Sbjct: 560 CDREEALQDFKDGRVR----ILVATDLASRGLDVHDITHVFNYDFPRNVEEY 607
Score = 41 (19.5 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 8 VMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVLPLLNPN 47
V A AAA P+ LR N + + M LP+L N
Sbjct: 194 VKAAAAAAPAPTPIDWTSLRENRDKYEAMKWQDLPVLKKN 233
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 262 (97.3 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 64/194 (32%), Positives = 106/194 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q L + L K ++ ++ GG R + Q
Sbjct: 158 LKTHSAQ------TGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALILGGDRMEDQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++IATPGR + + E L+L ++ + DE D LF + F LQ +I+
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIARL 268
Query: 450 PVTAQYLFVTATLP 463
P Q + +ATLP
Sbjct: 269 PGGHQTVLFSATLP 282
Score = 102 (41.0 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 37/134 (27%), Positives = 63/134 (47%)
Query: 491 GLEE-FLVDCSGDQESDKTPETAFL-----NKKSALLQLIEK--SPVSKTIVFCNKIVTC 542
GL E L+ D + ++ +T+F K + LL L+ P +T+VF + T
Sbjct: 292 GLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQDQTVVF---VATK 348
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
E + + + RV ++ALD R N+ +FT + L+ TD A+RG+
Sbjct: 349 HHAEYLTELLTTQ--RVSCAHIYSALDPTARKINLAKFTLGKCST----LIVTDLAARGL 402
Query: 603 DFAGVDHVVLFDFP 616
D +D+V+ + FP
Sbjct: 403 DIPLLDNVINYSFP 416
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 311 (114.5 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 111/402 (27%), Positives = 198/402 (49%)
Query: 249 TDCPKQRHKY-SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS 307
T PK+ K S D + K F L + ++E++++ F P++IQ+ P V +
Sbjct: 137 TGKPKKSKKEASKKTDISAWKQFYFL--PNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQ 194
Query: 308 CIL-ADQSGSGKTLAYLLPVIQRLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSN 364
+L A ++GSGKTLA+ +P++ RL + ++ Q + PR +I+APT EL Q++ +
Sbjct: 195 DVLGAAETGSGKTLAFGIPLVARLLESSDDSQETESTEVRGPRALIVAPTRELVIQIMKH 254
Query: 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENL-QEGVDVLIATPGRFMFLIKEG-----ILQL 418
+L + +V GG Q Q + Q+ D+++ATPGR +++E + +
Sbjct: 255 INALISTTQLIATSIV-GGLAQVKQERIISQQRPDIVVATPGRLWAMMQEAETGEFLAEW 313
Query: 419 INLRCAILDEVDILFNDEDFEVALQSLIS-----SSPVTAQYLFVTATLP-VEIYNKLVE 472
+L+C ++DE D + +E + L +++ S Q L +ATL + + E
Sbjct: 314 KDLKCLVVDETDRMV-EEGYFAELTHILNKIHEESEKEKLQTLVFSATLTFAKAQDVAEE 372
Query: 473 VFPDCKVVMGPG-MHRISP--GLEEF---LVDCSGDQESDKTPETAFLN------KKSAL 520
K + + R+ GL E ++D + + A +N K ++L
Sbjct: 373 EKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLTRQMGTAGCLVEARINCGNLLEKDTSL 432
Query: 521 LQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF 580
+ L+ + P +TIVF N I R++ ++LK + + HA + Q+ RL N+++F
Sbjct: 433 VYLLTRYP-GRTIVFVNSIDAARRLYSVLK-----SVNIDPMILHAKMIQKQRLKNLEKF 486
Query: 581 TTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
S SK A L+ TD A+RG+D G+DHV+ + P+ Y
Sbjct: 487 --SESKNA--VLLATDVAARGLDIQGIDHVIHYQVPKKVEIY 524
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 60/209 (28%), Positives = 107/209 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F ELG S+ +L+ + IQ A P ++ GK I ++G+GKTLA++LP++
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ E S + +I+APT ELA Q+ + + + + + GG
Sbjct: 65 EKIDPE---------SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVA 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ +++ATPGR + I+ + L NL +LDE D + F ++ ++
Sbjct: 116 QQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILD 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
+P + Q + +AT+P +I KL + + D
Sbjct: 175 ETPGSKQTMLFSATIPKDI-KKLAKRYMD 202
Score = 113 (44.8 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 39/131 (29%), Positives = 59/131 (45%)
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552
EE VD +Q +T + A K AL ++++ ++FC V K+ + LK
Sbjct: 212 EEVTVDTI-EQRVIETTDRA---KPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVV 611
H + Q R MK F +EA++ +L+ TD A+RG+D GV HV
Sbjct: 268 G-----YNCAELHGDIPQAKRERVMKSF-----REAKIQYLIATDVAARGLDVDGVTHVF 317
Query: 612 LFDFPRDPSEY 622
+D P D Y
Sbjct: 318 NYDIPEDVESY 328
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 239 (89.2 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 60/209 (28%), Positives = 107/209 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F ELG S+ +L+ + IQ A P ++ GK I ++G+GKTLA++LP++
Sbjct: 5 KNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL 64
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ E S + +I+APT ELA Q+ + + + + + GG
Sbjct: 65 EKIDPE---------SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVA 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ +++ATPGR + I+ + L NL +LDE D + F ++ ++
Sbjct: 116 QQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYF-GFLYDIEDILD 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
+P + Q + +AT+P +I KL + + D
Sbjct: 175 ETPGSKQTMLFSATIPKDI-KKLAKRYMD 202
Score = 113 (44.8 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 39/131 (29%), Positives = 59/131 (45%)
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552
EE VD +Q +T + A K AL ++++ ++FC V K+ + LK
Sbjct: 212 EEVTVDTI-EQRVIETTDRA---KPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGL 267
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVV 611
H + Q R MK F +EA++ +L+ TD A+RG+D GV HV
Sbjct: 268 G-----YNCAELHGDIPQAKRERVMKSF-----REAKIQYLIATDVAARGLDVDGVTHVF 317
Query: 612 LFDFPRDPSEY 622
+D P D Y
Sbjct: 318 NYDIPEDVESY 328
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 239 (89.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 71/259 (27%), Positives = 131/259 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG SD +++S++ F + IQA P ++GK I Q+G+GKT A+ LP++
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ +E +QG +++APT ELA QV + K R + + GG
Sbjct: 63 KVDTHKESVQG-----------IVIAPTRELAIQVGEELYKIGK-HKRVRILPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++ +++ TPGR + I L+L N+ +LDE D + N F +++++
Sbjct: 111 NRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P T Q L +AT+P I ++ E F + + + P +++F ++ ++
Sbjct: 170 TDVPETHQTLLFSATMPDPI-RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKF 228
Query: 506 DKTPETAFLNKKSALLQLI 524
D T L+ +S L ++
Sbjct: 229 DVL--TRLLDIQSPELAIV 245
Score = 117 (46.2 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
Identities = 41/160 (25%), Positives = 69/160 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q R++
Sbjct: 227 KFDVLTRLLDIQSPELAIVFGR---TKRRVDELSEALNLRGYAAEGI--HGDLTQAKRMS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
A +FV ++ + I ++ D P+ E +
Sbjct: 337 KGI-AMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEAL 375
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 251 (93.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 93/341 (27%), Positives = 164/341 (48%)
Query: 180 EGRLSKTTPSLENFR--ELGEHIVDNDV---------PAESIDKNISDYNSRSNKHEKSG 228
EG+ ++TT L + EL + +V + P++ +++ S+ + + EK
Sbjct: 41 EGKATETTTELTKDKDVELAKKVVKEEAQKKRKVSHSPSDE-EESESEDEEKKEEDEKDN 99
Query: 229 TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNF 288
K D G + + ++ + P+ DG K F ELG S+ ++ +K F
Sbjct: 100 VKEDSGKANVPDLPSV--DAVSLPQP------DG---GPKKFTELGLSEKTLQGIKEMGF 148
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
++IQ PP++ G+ + A ++GSGKTLA+L+P I+ L L+ ++ +G V
Sbjct: 149 ETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--SALRFKPRNGTG---V 203
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
++++PT ELA Q+ R L +V+ GG ++ + E L +GV++LIATPGR +
Sbjct: 204 IVVSPTRELALQIFGVARELLTAHSQTYGIVI-GGANRRAEAEKLTKGVNLLIATPGRLL 262
Query: 409 FLIKE--GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQY--LF-VTATLP 463
++ G + NL+ ++DE D + + FE ++ +I P + LF T T
Sbjct: 263 DHLQNTPGFV-FKNLKTLVIDEADRIL-EVGFEDEMRQIIKILPNEDRQTMLFSATQTTK 320
Query: 464 VEIYNKL-VEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
VE ++ + P V H GLE+ V C D+
Sbjct: 321 VEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADK 361
Score = 106 (42.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 34/138 (24%), Positives = 57/138 (41%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVE-NILKRFDRKETRVRVLPFHAALDQETRLANMK 578
L ++++ K IVF + C K +L D + VL H Q+ R
Sbjct: 366 LFSFLKRNLKKKIIVFFSSC-NCVKYHAELLNYID-----LPVLDLHGKQKQQKRTNTFF 419
Query: 579 EFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXK 638
EF ++ L+CTD A+RG+D VD ++ FD P D +Y +
Sbjct: 420 EFCNAKQG----VLICTDVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGR 475
Query: 639 AFIFVVGKQVSLAQRIME 656
+ +F+ +V + + E
Sbjct: 476 SLMFLQPSEVGFLKYLKE 493
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 258 (95.9 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 60/185 (32%), Positives = 101/185 (54%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
M+E + + F +PS IQ+ A+P +++G I Q+G+GKTLA+LLP + E Q
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLP---GMIHTEYQST 350
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
+ T G V++LAPT ELA Q+ + S G+ +++ V GG + Q+ +L+ G +
Sbjct: 351 PRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGM--KAVCVYGGGNRNMQISDLERGAE 408
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++I TPGR LI ++ + + +LDE D + D FE ++ ++ Q +
Sbjct: 409 IIICTPGRLNDLIMANVIDVSTITYLVLDEADRML-DMGFEPQIRKVMLDIRPDRQTIMT 467
Query: 459 TATLP 463
+AT P
Sbjct: 468 SATWP 472
Score = 101 (40.6 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 32/110 (29%), Positives = 55/110 (50%)
Query: 514 LNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
++K + + ++ S K I+FC + V + + L D T+ + +D+E
Sbjct: 513 MDKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELT-LDGFMTQC-IHGNRDQMDREQ 570
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+A++K S R+ LV TD ASRG+D + HV+ +DFP + EY
Sbjct: 571 AIADIK------SGVVRI-LVATDVASRGLDIEDITHVINYDFPHNIEEY 613
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 232 (86.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 87/328 (26%), Positives = 154/328 (46%)
Query: 185 KTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNL 244
+TT +LE F + E+ V +V + I K S+ E + G
Sbjct: 36 ETTNTLEEF-DFQENKV-KEVDLDEIIKKKGGLKEESDDEELALDGFGMGASKQEEEEEE 93
Query: 245 QYEPTDCPKQRH----KYSADG--DFFSRKS-------FKELGCSDYMIESLKRQNFLRP 291
+ E + P+ + + SA+ DF+ S F+ L S +++ + F +P
Sbjct: 94 EEEEVEVPEVKEVVEPEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKP 153
Query: 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351
+ IQ+ + P + GK + Q+GSGKT AY++P+I+RL L K ++ S +V+IL
Sbjct: 154 TPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERL-------LYKPST-STKVIIL 205
Query: 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI 411
PT ELA QV + LS + GG + Q E L+ D++IATPGR + I
Sbjct: 206 TPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHI 265
Query: 412 KEG-ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEIYNK 469
+ + +++ ++DE D + +E F+ L ++S P Q L +AT+ I +
Sbjct: 266 RNSPSFSVQDIQVLVIDEADRML-EEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDL 324
Query: 470 L-VEVFPDCKVVMGPGMHRISPGLEEFL 496
+ + + ++++ P S L++F+
Sbjct: 325 IQLSLQKPVRIMIDPPKSVASKLLQQFV 352
Score = 126 (49.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 517 KSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
K ALL + K S+ +VF + T ++ +L K V H AL QE RL N
Sbjct: 361 KPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLK-----VSELHGALTQEQRLQN 415
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+K F +S E + L+CTD A+RG+D ++ V+ +D P+
Sbjct: 416 VKNF---KSLEVPV-LICTDLAARGLDIPKIELVINYDMPK 452
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 232 (86.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 87/328 (26%), Positives = 154/328 (46%)
Query: 185 KTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNL 244
+TT +LE F + E+ V +V + I K S+ E + G
Sbjct: 36 ETTNTLEEF-DFQENKV-KEVDLDEIIKKKGGLKEESDDEELALDGFGMGASKQEEEEEE 93
Query: 245 QYEPTDCPKQRH----KYSADG--DFFSRKS-------FKELGCSDYMIESLKRQNFLRP 291
+ E + P+ + + SA+ DF+ S F+ L S +++ + F +P
Sbjct: 94 EEEEVEVPEVKEVVEPEDSAEAIADFYEESSPQQTHTSFQTLQLSRPVLKGIAELKFTKP 153
Query: 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351
+ IQ+ + P + GK + Q+GSGKT AY++P+I+RL L K ++ S +V+IL
Sbjct: 154 TPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERL-------LYKPST-STKVIIL 205
Query: 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI 411
PT ELA QV + LS + GG + Q E L+ D++IATPGR + I
Sbjct: 206 TPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHI 265
Query: 412 KEG-ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEIYNK 469
+ + +++ ++DE D + +E F+ L ++S P Q L +AT+ I +
Sbjct: 266 RNSPSFSVQDIQVLVIDEADRML-EEGFQDELTEILSLIPKHKRQTLLFSATMNTRIQDL 324
Query: 470 L-VEVFPDCKVVMGPGMHRISPGLEEFL 496
+ + + ++++ P S L++F+
Sbjct: 325 IQLSLQKPVRIMIDPPKSVASKLLQQFV 352
Score = 126 (49.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 517 KSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
K ALL + K S+ +VF + T ++ +L K V H AL QE RL N
Sbjct: 361 KPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLK-----VSELHGALTQEQRLQN 415
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+K F +S E + L+CTD A+RG+D ++ V+ +D P+
Sbjct: 416 VKNF---KSLEVPV-LICTDLAARGLDIPKIELVINYDMPK 452
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 312 (114.9 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 117/447 (26%), Positives = 203/447 (45%)
Query: 191 ENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTD 250
+ F E D++ A+ +KN + ++ + K +KS K + S + P D
Sbjct: 159 DQFNSEDEEFYDDEKQAKKSNKN-KNADADNKKSKKSNKKEEIE-----SSEKFESFPMD 212
Query: 251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
++ + + F+ + + +++++ ++ F P+ IQ + P +++G +
Sbjct: 213 ENNEQEEETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVG 272
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKT A+++P+IQ+L ST+ R VIL+PT ELA Q + S+
Sbjct: 273 MARTGSGKTGAFVIPMIQKLGDH-------STTVGVRAVILSPTRELAIQTFKVVKDFSQ 325
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
G R++++ GG + Q +L D++IATPGR M + E + L ++ + DE D
Sbjct: 326 -GTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGMSLSKVQYIVFDEAD 384
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLP---VEIYN------KLVEVFPDCKVVM 481
LF + F L ++S Q L +ATLP V+ KL+ + D K+
Sbjct: 385 RLF-EMGFNEQLTEILSKLSENRQTLLFSATLPSLLVDFVRAGLNNPKLINLDTDTKISE 443
Query: 482 GPGM------HRISPGLEEFLV-DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIV 534
+ H G+ FL+ D + T ET + ++ S TI+
Sbjct: 444 NLSLSFFTLRHEEKLGVLLFLLKDIIYKKPQLPTTETTTTTTTNNESNQ-QQQKKSSTII 502
Query: 535 FCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVC 594
F + + +L+R T + H LD R N+ +F RS + + +V
Sbjct: 503 FVSTKYHVEFIHILLERAGIASTYI-----HGYLDPVARKINLAKF---RSHQVGVMVV- 553
Query: 595 TDRASRGIDFAGVDHVVLFDFPRDPSE 621
TD A+RGID +D+V+ FDFP P E
Sbjct: 554 TDLAARGIDIPLLDNVINFDFP--PKE 578
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 270 (100.1 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 62/199 (31%), Positives = 111/199 (55%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ +++ + +P+ +Q A P V++G+ ++A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 329 RLRQEELQGLSKSTSG-SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL S+ PRV++L PT ELA+QV + + ++ + F S + GG
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYAR-DLKFVSACIFGGVGMN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ + GVDVL+A PGR + L +G + L ++ +LDE D + D F ++ +++
Sbjct: 121 PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRML-DMGFVHDVKKVLA 179
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 180 RLPAKRQNLLFSATFSKDI 198
Score = 85 (35.0 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 28/108 (25%), Positives = 48/108 (44%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
+K++ L LI + +VF T + + D+ + + H Q R
Sbjct: 235 HKRALLAHLITAGAWEQVLVFTR---TKHGANRLAEYLDKHG--LSAVAIHGNKSQNART 289
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F ++ E R+ LV TD A+RG+D + HVV F+ P +Y
Sbjct: 290 KALADF---KAGEVRI-LVATDIAARGLDIDQLPHVVNFELPNVDEDY 333
>UNIPROTKB|Q9NVP1 [details] [associations]
symbol:DDX18 "ATP-dependent RNA helicase DDX18"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AK001467 EMBL:BC001238 EMBL:BC003360 EMBL:BC024739
EMBL:X98743 EMBL:CR457060 IPI:IPI00301323 PIR:S71758
RefSeq:NP_006764.3 UniGene:Hs.363492 PDB:3LY5 PDBsum:3LY5
ProteinModelPortal:Q9NVP1 SMR:Q9NVP1 IntAct:Q9NVP1
MINT:MINT-1382348 STRING:Q9NVP1 PhosphoSite:Q9NVP1 DMDM:20532388
SWISS-2DPAGE:Q9NVP1 PaxDb:Q9NVP1 PeptideAtlas:Q9NVP1 PRIDE:Q9NVP1
Ensembl:ENST00000263239 GeneID:8886 KEGG:hsa:8886 UCSC:uc002tlh.1
CTD:8886 GeneCards:GC02P118572 HGNC:HGNC:2741 HPA:HPA035400
MIM:606355 neXtProt:NX_Q9NVP1 PharmGKB:PA27207 HOVERGEN:HBG105702
InParanoid:Q9NVP1 OrthoDB:EOG4894MF PhylomeDB:Q9NVP1
ChEMBL:CHEMBL5060 ChiTaRS:DDX18 EvolutionaryTrace:Q9NVP1
GenomeRNAi:8886 NextBio:33369 ArrayExpress:Q9NVP1 Bgee:Q9NVP1
CleanEx:HS_DDX18 Genevestigator:Q9NVP1 GermOnline:ENSG00000088205
Uniprot:Q9NVP1
Length = 670
Score = 236 (88.1 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 60/202 (29%), Positives = 112/202 (55%)
Query: 265 FSRKSFKELGCS---DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
F SF L C+ + ++++K F ++IQ + P++EG+ + A ++GSGKTLA
Sbjct: 174 FEDTSFASL-CNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA 232
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+L+P ++ + +L+ + ++ +G V+IL+PT ELA Q + L V +++
Sbjct: 233 FLIPAVELI--VKLRFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM- 286
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFE 439
GG + + + L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 287 GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFE 344
Query: 440 VALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 345 EELKQIIKLLPTRRQTMLFSAT 366
Score = 108 (43.1 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + ++ + +L D + VL H Q R +
Sbjct: 416 LFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYID-----LPVLAIHGKQKQNKRTTTFFQ 470
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 471 FCNADSGT----LLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 509
Score = 56 (24.8 bits), Expect = 3.4e-24, Sum P(3) = 3.4e-24
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 122 KDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK-KTVNALKQE 180
K P + T VL N + ++ S S + K ++ K V D K KT N K E
Sbjct: 85 KSPQKST----VLTNGEAAMQSSN---SESKKKKKKKRKMVNDAEPDTKKAKTENKGKSE 137
Query: 181 GRLSKTTPSLENFRELGEHIVD-NDVPA 207
++TT EN E ++ D ++VP+
Sbjct: 138 EESAETTKETENNVEKPDNDEDESEVPS 165
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 262 (97.3 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 78/271 (28%), Positives = 133/271 (49%)
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ---- 332
+ ++E++K +F +P+ +Q + P V +G+ + Q+GSGKT +L P+ L +
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222
Query: 333 ---EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKT 388
E+ Q S G P ++LAPT ELA+Q+ R + + V R VV GG
Sbjct: 223 PVPEKAQSFY-SRKGYPSALVLAPTRELATQIFEEARKFTYRSWV--RPCVVYGGAPIGN 279
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + G D+L+ATPGR L++ G + L N++ +LDE D + D FE ++ ++
Sbjct: 280 QMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRML-DMGFEPQIRHIVEE 338
Query: 449 SPVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ + Q L +AT PV+I + L F D + + G V + +
Sbjct: 339 CDMPSVENRQTLMFSATFPVDIQH-LARDFLDNYIFLSVGR-----------VGSTSENI 386
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVF 535
+ + ++KKSALL L+ T++F
Sbjct: 387 TQRILYVDDMDKKSALLDLLSAEHKGLTLIF 417
Score = 92 (37.4 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 31/109 (28%), Positives = 50/109 (45%)
Query: 514 LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
++KKSALL L+ T++F ++ + L + K T + H Q R
Sbjct: 396 MDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAI-----HGDRTQAER 450
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ F ++ A + LV T A+RG+D V HV+ +D P D +Y
Sbjct: 451 ERALSAF---KANVADI-LVATAVAARGLDIPNVTHVINYDLPSDIDDY 495
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 263 (97.6 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 64/194 (32%), Positives = 105/194 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT A+L+P+ ++
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ + Q +G+ R +IL PT ELA Q + + L K R+ ++ GG Q
Sbjct: 140 LKAPQAQ------TGA-RALILTPTRELALQTMKFTKELGKF-TGLRTALILGGDSMDDQ 191
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++I TPGR M +I+E L+L ++ + DE D LF + F LQ +I
Sbjct: 192 FAALHENPDIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIRRL 250
Query: 450 PVTAQYLFVTATLP 463
P Q L +ATLP
Sbjct: 251 PDARQTLLFSATLP 264
Score = 96 (38.9 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 36/107 (33%), Positives = 54/107 (50%)
Query: 515 NKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
+K + LL L+ P +T+VF + T VE LK E V ++ALDQ
Sbjct: 304 DKPALLLHLLRNVVKPQEQTVVF---VATKHHVE-YLKELLSAEG-VDCSCIYSALDQTA 358
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
R ++ F ++ L LV TD A+RGID +D+V+ ++FP P
Sbjct: 359 RKISIGRFV---HRKVMLLLV-TDVAARGIDIPLLDNVINYNFPCKP 401
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 307 (113.1 bits), Expect = 4.3e-24, P = 4.3e-24
Identities = 98/365 (26%), Positives = 167/365 (45%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + M +++R + R + IQ P V +GK + Q+GSGKT A+LLP++
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM 357
Query: 328 QRLRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL E+ L+ G PR +IL PT ELA Q+ + R S V V GG
Sbjct: 358 SRLILEK--DLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSV-MEIKPVYGGIN 414
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ +G +++ T GR ++G ++L R +LDE D + + F ++ +
Sbjct: 415 VGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQI 474
Query: 446 IS--SSPVT--AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG----LEEFLV 497
I+ + P Q + +AT P + ++ + ++ + +I ++EF +
Sbjct: 475 INYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMIT--IDKIGAANKCVIQEFEL 532
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C + DK + ++ + + V KTIVF V +K+ + L
Sbjct: 533 -CDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVF----VAQQKMADTLASI-MSAA 586
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+V + H A +Q+ R A +K F + A+ L+ T RG+D GVDHV+ +D P
Sbjct: 587 QVPAITIHGAREQKERSAALKLFRSG----AKPVLIATAVVERGLDIKGVDHVINYDMPN 642
Query: 618 DPSEY 622
+ +Y
Sbjct: 643 NIDDY 647
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 307 (113.1 bits), Expect = 4.3e-24, P = 4.3e-24
Identities = 98/365 (26%), Positives = 167/365 (45%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + M +++R + R + IQ P V +GK + Q+GSGKT A+LLP++
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM 357
Query: 328 QRLRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL E+ L+ G PR +IL PT ELA Q+ + R S V V GG
Sbjct: 358 SRLILEK--DLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSV-MEIKPVYGGIN 414
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ +G +++ T GR ++G ++L R +LDE D + + F ++ +
Sbjct: 415 VGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQI 474
Query: 446 IS--SSPVT--AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG----LEEFLV 497
I+ + P Q + +AT P + ++ + ++ + +I ++EF +
Sbjct: 475 INYKNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMIT--IDKIGAANKCVIQEFEL 532
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C + DK + ++ + + V KTIVF V +K+ + L
Sbjct: 533 -CDRTSKVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVF----VAQQKMADTLASI-MSAA 586
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+V + H A +Q+ R A +K F + A+ L+ T RG+D GVDHV+ +D P
Sbjct: 587 QVPAITIHGAREQKERSAALKLFRSG----AKPVLIATAVVERGLDIKGVDHVINYDMPN 642
Query: 618 DPSEY 622
+ +Y
Sbjct: 643 NIDDY 647
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 247 (92.0 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 62/215 (28%), Positives = 106/215 (49%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
P+ + + D F +L ++ + + +++PS IQ A P + G+ +
Sbjct: 33 PRDERRQTEDVTATEGNDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMAR 92
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GKT ++L+P +++ + T +V+IL PT ELA Q C+ L K
Sbjct: 93 AKNGTGKTASFLIPALEK---------TDPTKDVIQVLILVPTRELALQTSQVCKELGKY 143
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ + M TGG K + L V +L+ATPGR + L ++ + L N I+DE D
Sbjct: 144 -MNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADK 202
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + E F+ ++ LI+ P Q L +AT PV +
Sbjct: 203 LLSQE-FQPLVEQLINFLPQQRQILLFSATFPVTV 236
Score = 98 (39.6 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 31/107 (28%), Positives = 48/107 (44%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L K ++++I+FCN + +VE + K+ E HA + Q R
Sbjct: 273 KIHCLNTLFSKLQINQSIIFCNSV---NRVELLAKKIT--ELGYSCFFIHAKMVQAHRNR 327
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LV +D +RGID V+ V+ FDFP+ Y
Sbjct: 328 VFHDFRNGACRN----LVSSDLFTRGIDIQDVNVVINFDFPKHSETY 370
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 290 (107.1 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 102/369 (27%), Positives = 174/369 (47%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F ++ + ++ +++ + RP+ +Q A P + E + + Q+GSG T A+LLP++
Sbjct: 173 ENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPIL 232
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 233 SQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 291
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 292 VVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 350
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 351 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR--------- 400
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
V + + + K L+K+S LL L+ + S T+VF V +K + L+ F
Sbjct: 401 --VGSTSENITQKVVWVEELDKRSFLLDLLNATGRDSLTLVF----VETKKGADSLENFL 454
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
+E R H Q+ R + +F + R LV T A+RG+D + V HV+ F
Sbjct: 455 FQE-RYACTSIHGDRSQKDREEALHQFRSGRKP----ILVATAVAARGLDISNVKHVINF 509
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 510 DLPSDIEEY 518
Score = 62 (26.9 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 27/88 (30%), Positives = 36/88 (40%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY 246
P L N RE + + D D S DK+ S + SR ++ K DRG S G +
Sbjct: 38 PHLRN-RETSKGVCDKDNSGWSKDKDAYSSFGSRDSRG-KPNYFSDRGSGSRGRFDDPGR 95
Query: 247 EPTDCPKQRHKYSADGDFFSRKSFKELG 274
DC R + S G F R + G
Sbjct: 96 SDYDCIASRDR-SGFGKF-ERSGYSRWG 121
Score = 44 (20.5 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 222 NKHEKSGT--KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDY- 278
N+ G K + GW ++ + D + + Y +D SR F + G SDY
Sbjct: 42 NRETSKGVCDKDNSGWSKDKDAYS-SFGSRDS-RGKPNYFSDRGSGSRGRFDDPGRSDYD 99
Query: 279 MIESLKRQNF 288
I S R F
Sbjct: 100 CIASRDRSGF 109
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 239 (89.2 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 61/215 (28%), Positives = 111/215 (51%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK ++D F++ ++ + + +PS IQ + P + G+ +
Sbjct: 80 PKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILAR 139
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GK+ AYL+P+++RL L K + +++ PT ELA QV C +SK
Sbjct: 140 AKNGTGKSGAYLIPLLERL------DLKKDNI---QAMVIVPTRELALQVSQICIQVSKH 190
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ M TGG + + L + V V+IATPGR + LIK+G+ ++ +++ +LDE +
Sbjct: 191 MGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANK 250
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
L + +DF ++ +I + P Q L +AT P+ +
Sbjct: 251 LLS-QDFVQIMEDIILTLPKNRQILLYSATFPLSV 284
Score = 111 (44.1 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 32/107 (29%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + ++++I+FCN + ++VE + K+ + HA + QE R
Sbjct: 321 KVHCLNTLFSRLQINQSIIFCN---SSQRVELLAKKIS--QLGYSCFYIHAKMRQEHRNR 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVCTD +RGID V+ V+ FDFP+ Y
Sbjct: 376 VFHDFRNGLCRN----LVCTDLFTRGIDIQAVNVVINFDFPKLAETY 418
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 255 (94.8 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 62/194 (31%), Positives = 105/194 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K ++ ++ GG + + Q
Sbjct: 157 LKARSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 208
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++IATPGR + + E L+L ++ + DE D LF + F LQ +I
Sbjct: 209 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIGRL 267
Query: 450 PVTAQYLFVTATLP 463
P Q + +ATLP
Sbjct: 268 PGGHQTVLFSATLP 281
Score = 104 (41.7 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 38/134 (28%), Positives = 66/134 (49%)
Query: 491 GLEE-FLVDCSGDQESDKTPETAFL-----NKKSALLQLIEK--SPVSKTIVFCNKIVTC 542
GL E L+ D + ++ +T+FL K + LL L++ P +T+VF + T
Sbjct: 291 GLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVF---VATK 347
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
E + + + V ++ALDQ R N+ +FT ++ L+ TD A+RG+
Sbjct: 348 HHAEYLTELLMGQG--VSCAHIYSALDQTARKINLAKFTHNKCST----LIVTDLAARGL 401
Query: 603 DFAGVDHVVLFDFP 616
D +D+V+ + FP
Sbjct: 402 DIPLLDNVINYSFP 415
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 293 (108.2 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 76/239 (31%), Positives = 129/239 (53%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G S ++ ++KR+ F +P+ IQ P +++ + + ++GSGKT A++LP+++
Sbjct: 138 SFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ S S R VIL+P+ ELA Q + + ++ G RS+++TGG +
Sbjct: 198 KLK-------SHSGKIGARAVILSPSRELAMQTFNVFKDFAR-GTELRSVLLTGGDSLEE 249
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + DV+IATPGRF+ L E L L ++ + DE D LF + F+ L L++S
Sbjct: 250 QFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLAS 308
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE-FLVDCSGDQESD 506
P T Q L +ATLP + + + + +V ++S LE FL + D+E++
Sbjct: 309 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREAN 367
Score = 65 (27.9 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKS---PVSK-TIVFCNKIVTCRKVENILKRFD 553
D D E+D+ + K+ Q + + P K TI+F + T VE I +
Sbjct: 397 DSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILF---VPTRHHVEYISQLL- 452
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
++ + + LDQ R + F + LV TD A+RG+D + +V+ +
Sbjct: 453 -RDCGYLISYIYGTLDQHARKRQLYNFRAGLTS----ILVVTDVAARGVDIPMLANVINY 507
Query: 614 DFP 616
P
Sbjct: 508 TLP 510
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 245 (91.3 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 64/198 (32%), Positives = 104/198 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++E+L + +PS IQA P ++ G+ + Q+GSGKT A+ LP++Q
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L EL+ +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NL-DPELK--------APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G +++ TPGR + +K G L L L +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q +AT+P I
Sbjct: 177 IPEGHQTALFSATMPEAI 194
Score = 109 (43.4 bits), Expect = 5.8e-24, Sum P(2) = 5.8e-24
Identities = 45/163 (27%), Positives = 71/163 (43%)
Query: 514 LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
+ K AL++ +E I+F +V L+R AAL+ +
Sbjct: 230 MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNS---------AALNGDMN 280
Query: 574 LANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXX 632
A ++E T R K+ RL L+ TD A+RG+D + VV +D P D Y
Sbjct: 281 QA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339
Query: 633 XXXXXKAFIFVVGKQVSLAQRIMERNRK-GHPLHDVPSAFELM 674
+A +FV ++ L + I ER K P ++P+A EL+
Sbjct: 340 GRAG-RALLFVENRERRLLRNI-ERTMKLTIPEVELPNA-ELL 379
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 304 (112.1 bits), Expect = 6.2e-24, P = 6.2e-24
Identities = 108/363 (29%), Positives = 167/363 (46%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G M++++ + P+ IQA P + +G I Q+GSGKT A+L+PVI +
Sbjct: 124 FEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIPVINK 183
Query: 330 L--RQEELQG-----------LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
L + ++L + P VVI+ PT ELA Q + R L + R
Sbjct: 184 LMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELAIQAFNEARKLCYRSM-LR 242
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND 435
VV GG Q+ + G D+L ATPGR + F+ K +L L +R ++DE D +
Sbjct: 243 PGVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPELLNLQRVRYVVIDEADEMLT- 301
Query: 436 EDFEVALQSLISSSPVTAQ--YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
D+E ++ ++S+ + YL +AT P +I + E + V + G R
Sbjct: 302 ADWEEDMKKIMSAGGAAQEIKYLLFSATFPKKIRDLAREHLSEDHVQLRVG--RAGSTHS 359
Query: 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD 553
+ ETA +NKK AL LI P +TI+F N T ++++ L
Sbjct: 360 NII---------QTVIETAPMNKKRALNDLINSMPPQRTIIFVNNKWTADELDDYLYN-- 408
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E ++ HA Q R ++ F R+ A + LV T +RGID V HVV +
Sbjct: 409 --ECKLPCTSMHADRTQREREDALRAF---RAGTAPI-LVTTGVTARGIDVRNVAHVVNY 462
Query: 614 DFP 616
D P
Sbjct: 463 DLP 465
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 261 (96.9 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 72/230 (31%), Positives = 119/230 (51%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L S ++ ++ + +P+ IQ A P V+ GK I A Q+G+GKT +++LP+++
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + K + R +IL PT ELA QV ++ +K + SM + GG +
Sbjct: 62 QLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKY-LDISSMAMYGGVDAQE 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L GVD+L+ATPGR + + + +L L +LDE D + D F + +I
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRML-DMGFIDDINKIIER 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLV 497
P Q L +AT+ E+ L + V + G + S P +E++LV
Sbjct: 180 LPEHRQNLLFSATMSEEVRG-LAKRTIHKPVEISIGADKASKPKIEQWLV 228
Score = 77 (32.2 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
NK + L +I + ++F I T ++ + +++ + H+ Q+ R
Sbjct: 234 NKSALLSHIITTQNWQQALIF---IETKHGAAKLVSQLEKRGIVAESI--HSGRAQDIRE 288
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F + + K FLV T A+RG+D + V+ +D P +Y
Sbjct: 289 KILNDFKSGKIK----FLVATAIAARGLDIGELSRVINYDLPAQVDDY 332
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 236 (88.1 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 74/203 (36%), Positives = 108/203 (53%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFKELG D + E+ + + P+ IQ+ A P +EG+ I ++GSGKT A+ LP++
Sbjct: 46 KSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML 105
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQ 386
Q L E Q L G ++LAPT ELA Q+ +L S GV R V+ GG
Sbjct: 106 QAL-MEAPQTLF----G----LVLAPTRELAYQISQAFETLGSTIGV--RCAVIVGGMDM 154
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L + +++ATPGR + ++ +G L NL+ +DE D L D DF +L
Sbjct: 155 VAQSIALGKKPHIIVATPGRLLDHLENTKGF-SLRNLKYLAIDEADRLL-DMDFGESLDK 212
Query: 445 LISSSPVTAQ-YLFVTATLPVEI 466
+I P T YLF +AT+ ++
Sbjct: 213 IIRILPRTRHTYLF-SATMSTKV 234
Score = 112 (44.5 bits), Expect = 6.5e-24, Sum P(2) = 6.5e-24
Identities = 33/108 (30%), Positives = 50/108 (46%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
+K L+ L+ + I+F + ++V +L+ +P H L Q RL
Sbjct: 271 HKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALG-----FGAIPLHGQLSQSARL 325
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F SRS++ LV TD A+RG+D VD V FD P D Y
Sbjct: 326 GALGKFR-SRSRD---ILVATDVAARGLDIPSVDVVFNFDLPMDSKTY 369
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 239 (89.2 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
Identities = 76/263 (28%), Positives = 136/263 (51%)
Query: 265 FSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+ +F ELG ++I ++ + +Q + P ++EG+ ++ Q+GSGKTLAY
Sbjct: 98 FTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYC 157
Query: 324 LPVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--- 379
+PV+Q L+ E SK S P ++L PT ELA Q + L K PF +V
Sbjct: 158 IPVVQSLQAME----SKIQRSDGPYALVLVPTRELALQSFDTVQKLLK---PFTWIVPGV 210
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFN---D 435
+ GG ++K++ L++G+++LI+TPGR + IK + LR + DE D + + +
Sbjct: 211 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFE 270
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISP-- 490
+D V L + +++ Q + ++ATL E +L ++ P V+ +++P
Sbjct: 271 KDITVILNA-VNAECQKRQNVLLSATL-TEGVTRLADISLHDPVSISVLDKSHDQLNPKD 328
Query: 491 -GLEEFLVDCSGDQ-ESDKTPET 511
++E +GD+ +S PE+
Sbjct: 329 KAVQEVCPPPAGDKLDSFAIPES 351
Score = 117 (46.2 bits), Expect = 6.8e-24, Sum P(2) = 6.8e-24
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
R++ L H ++QE R A +EF+ SR R L+CTD A+RG+D V +V ++ P
Sbjct: 423 RLKFLRLHGGMEQEERTAVFQEFSHSR----RGVLLCTDVAARGLDLPQVTWIVQYNAPS 478
Query: 618 DPSEY 622
P+EY
Sbjct: 479 SPAEY 483
>POMBASE|SPBC4F6.07c [details] [associations]
symbol:SPBC4F6.07c "ATP-dependent RNA helicase Mak5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC4F6.07c
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702
OMA:VEEGYFA OrthoDB:EOG44J5S7 PIR:T40504 RefSeq:NP_596107.1
ProteinModelPortal:O74393 STRING:O74393 EnsemblFungi:SPBC4F6.07c.1
GeneID:2540874 KEGG:spo:SPBC4F6.07c NextBio:20801990 Uniprot:O74393
Length = 648
Score = 304 (112.1 bits), Expect = 7.0e-24, P = 7.0e-24
Identities = 126/484 (26%), Positives = 211/484 (43%)
Query: 195 ELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQ 254
EL E D E K+ + + + K +++ I+ G + + Y ++
Sbjct: 52 ELPEVHEKKDKKPEKRKKDQKEASEKKKKGKRTSPTIEMT-SLGSKVTSKNYNEFSTLEE 110
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
++++ G S ++ S M+ SL + F +P IQ++ P G I +
Sbjct: 111 EDEHNSHGVDVS--AWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADT 168
Query: 315 GSGKTLAYLLPVIQR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV 373
GSGKTLA+ +P+++ LR + + + + +++APT ELA Q+ + L K
Sbjct: 169 GSGKTLAFGIPILEHCLRNVDAKYV--------QALVVAPTRELAHQICQHFE-LIKPSP 219
Query: 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINLRCAILDEVDI 431
R M +TGG + Q L + V++ATPGR +I E L ++C +LDE D
Sbjct: 220 NIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADR 279
Query: 432 LFNDEDFEVALQSL-ISSSPV-TAQYLFV-TATLPVEIYNKLVEVFPD--CKVVMGPGMH 486
L FE + L I +P+ T + F+ +AT + +L + + P +
Sbjct: 280 LLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMEN 339
Query: 487 RISP----GLEEFLVDCS-----GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
+ G +FL D + + + E A K L LI + P KT+VF N
Sbjct: 340 MLKEVRFFGKPKFL-DANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYP-GKTMVFAN 397
Query: 538 KIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597
I +++ L E +V P HA LDQ+ RL ++++F + + LVCTD
Sbjct: 398 GIEDIKRITPFLN-----ELKVPSYPLHAQLDQKKRLQSLEKFKNN----PKGVLVCTDV 448
Query: 598 ASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVG-KQVSLAQRIME 656
A+RGID V HV+ + P Y I + G K++S +R+
Sbjct: 449 AARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVS--ILMCGPKELSQLKRLCY 506
Query: 657 RNRK 660
R +K
Sbjct: 507 RLKK 510
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 244 (91.0 bits), Expect = 7.2e-24, Sum P(2) = 7.2e-24
Identities = 61/201 (30%), Positives = 114/201 (56%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ +++++ F R ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 164 FEDTSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 223
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+PVI+ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 224 LIPVIELI--VKLKFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 277
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + +++ L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 278 GSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 335
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 336 ELKQIIKLLPARRQTMLFSAT 356
Score = 110 (43.8 bits), Expect = 7.2e-24, Sum P(2) = 7.2e-24
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + ++ + +L D + VL H Q R +
Sbjct: 406 LFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYID-----LPVLAIHGKQKQNKRTTTFFQ 460
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 461 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 499
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 254 (94.5 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 71/245 (28%), Positives = 119/245 (48%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNF 288
I W+ I + E + + + +G+ S +SF+E+ ++ L +
Sbjct: 138 IKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGI 197
Query: 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348
P+ IQ P V+ G+ I +GSGKTL ++LPVI ++E L + P
Sbjct: 198 KNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYS-LPFERNEGPYG 256
Query: 349 VILAPTAELASQ---VLSN-CRSLSKCGVP-FRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
+I+ P+ ELA Q ++ + + L CG+P RS + GG L+ + GV +++AT
Sbjct: 257 LIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVAT 316
Query: 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
PGR M ++ + IL L R +DE D + D FE ++++ S Q L +AT+P
Sbjct: 317 PGRLMDMLDKKILTLDMCRYLCMDEADRMI-DMGFEEDVRTIFSFFKGQRQTLLFSATMP 375
Query: 464 VEIYN 468
+I N
Sbjct: 376 KKIQN 380
Score = 98 (39.6 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
V + H DQE R + + + K+ LV TD AS+G+DF V HV+ +D P D
Sbjct: 453 VEAVAIHGGKDQEERSRAVDAYRVGK-KDV---LVATDVASKGLDFPNVQHVINYDMPDD 508
Query: 619 PSEY 622
Y
Sbjct: 509 IENY 512
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 237 (88.5 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 94/378 (24%), Positives = 170/378 (44%)
Query: 146 GVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDV 205
GV+ +A + R A ++ A K++ + S P + R +
Sbjct: 6 GVLPQVPEPRAAVFRTFSKPRPAHARRQAAATKRKCQASSEAPPAKR-RSKASFLPAKKT 64
Query: 206 PAESIDKNISDYNSR--SNKHEKSGTKI-DRGWRSGGSIHNLQYEPTDCPKQRHKY--SA 260
A+ + + R S K +G + D+ + G +L + P+
Sbjct: 65 AAKETRRTLKGKAQRTFSPKKPSAGARDGDQERKPGAKTSSLFKNNPEIPELPRPVVKQV 124
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
F+ +F+ L ++I ++ + +Q + P ++EG+ ++ Q+GSGKT
Sbjct: 125 QEKVFTSDAFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKT 184
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
LAY +PV+Q L + +Q + G P +IL PT ELA Q + L K PF +V
Sbjct: 185 LAYCIPVVQSL--QAMQSKIQRGDG-PYALILVPTRELALQSFDTVQKLLK---PFTWIV 238
Query: 380 ---VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFN- 434
+ GG ++K++ L++G+++LI+TPGR + IK + +R ILDE D + +
Sbjct: 239 PGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFRQIRWLILDEADRILDL 298
Query: 435 --DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRIS 489
++D V L + +++ Q + ++ATL E +L ++ P V+ S
Sbjct: 299 GFEKDLTVILNA-VNAECQERQNVLLSATL-TEGVARLADISLHDPVSISVLDESHDVSS 356
Query: 490 PGLEEFLVDCSGDQESDK 507
P E FL + S Q +D+
Sbjct: 357 PESEAFL-EASPPQATDE 373
Score = 119 (46.9 bits), Expect = 7.5e-24, Sum P(2) = 7.5e-24
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
T ++ L H+AL+QE R A ++FT SK LF CTD A+RG+D V +V ++ P
Sbjct: 453 TPLKFLRLHSALEQEERTAVFQDFT--HSKTGILF--CTDIAARGLDLPQVTWIVQYNAP 508
Query: 617 RDPSEY 622
P+EY
Sbjct: 509 SSPAEY 514
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 298 (110.0 bits), Expect = 9.0e-24, P = 9.0e-24
Identities = 90/314 (28%), Positives = 150/314 (47%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + ++++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K + ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYTK-HLKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F + S +E+ +V G + +
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREA 234
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E K++ L LI E + I+FCN+ V L+++ P H
Sbjct: 235 SE-----KRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAA-----PIHG 284
Query: 567 ALDQETRLANMKEF 580
LDQ R + F
Sbjct: 285 DLDQSQRTRTLDGF 298
Score = 275 (101.9 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 87/280 (31%), Positives = 131/280 (46%)
Query: 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPG 405
PR ++L PT ELA+QV N + +K + ++ GG K Q + GVDVLIATPG
Sbjct: 74 PRSLVLCPTRELAAQVAENFDTYTK-HLKLTKALLIGGVSFKEQDALIDRGVDVLIATPG 132
Query: 406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465
R + + G L L ++ ++DE D + D F ++ + S +P T Q LF +AT+ E
Sbjct: 133 RLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLTPFTRQTLFFSATMAPE 191
Query: 466 IYNKLVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524
I ++ F + S +E+ +V G + + E K++ L LI
Sbjct: 192 I-ERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASE-----KRAVLRALI 245
Query: 525 --EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
E + I+FCN+ V L+++ P H LDQ R + F
Sbjct: 246 DAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAA-----PIHGDLDQSQRTRTLDGF-- 298
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R + RL LV +D A+RG+D V HV FD P P +Y
Sbjct: 299 -REGKLRL-LVASDVAARGLDVPSVSHVFNFDVPGHPEDY 336
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 294 (108.6 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 105/369 (28%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 239 SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 297
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 298 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 356
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 357 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 413
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
+ESDK +S LL L+ + S T+VF V +K + L+ F
Sbjct: 414 ITQKVVWVEESDK---------RSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 460
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 461 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 515
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 516 DLPSDIEEY 524
Score = 55 (24.4 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 188 PSLENFRELGEHIVDNDVP--AESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D + S DK+ S + SRS+ KS DRG S G
Sbjct: 41 PHLRN-REATKGFYDKDSSGWSSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRG 94
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 294 (108.6 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 105/369 (28%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 240 SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 298
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 357
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 414
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
+ESDK +S LL L+ + S T+VF V +K + L+ F
Sbjct: 415 ITQKVVWVEESDK---------RSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 461
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 462 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 516
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 517 DLPSDIEEY 525
Score = 55 (24.4 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 188 PSLENFRELGEHIVDNDVP--AESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D + S DK+ S + SRS+ KS DRG S G
Sbjct: 41 PHLRN-REATKGFYDKDSSGWSSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRG 94
Score = 44 (20.5 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 211 DKNISDYNSRSNKHEKSGT-KIDRGWRS 237
D+ SDY+ ++ ++SG K +RG S
Sbjct: 98 DRGRSDYDGIGSRGDRSGFGKFERGGNS 125
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 294 (108.6 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 105/369 (28%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 240 SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 298
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 357
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 414
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
+ESDK +S LL L+ + S T+VF V +K + L+ F
Sbjct: 415 ITQKVVWVEESDK---------RSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 461
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 462 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 516
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 517 DLPSDIEEY 525
Score = 55 (24.4 bits), Expect = 9.4e-24, Sum P(2) = 9.4e-24
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 188 PSLENFRELGEHIVDNDVP--AESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D + S DK+ S + SRS+ KS DRG S G
Sbjct: 41 PHLRN-REATKGFYDKDSSGWSSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRG 94
Score = 44 (20.5 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 211 DKNISDYNSRSNKHEKSGT-KIDRGWRS 237
D+ SDY+ ++ ++SG K +RG S
Sbjct: 98 DRGRSDYDGIGSRGDRSGFGKFERGGNS 125
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 304 (112.1 bits), Expect = 9.7e-24, P = 9.7e-24
Identities = 100/362 (27%), Positives = 172/362 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + ++K GG ++
Sbjct: 198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITK---KLSVACFYGGTSYQS 251
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
Q+ +++ G+D+L+ TPGR ++ G L L LR +LDEVD + F ++ ++ +S
Sbjct: 252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHES 311
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
+ S Q L +AT P +Y K+ + + + ++G + + +E + C
Sbjct: 312 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
Q P A + +LQ+ S + I+FC +K N+ + +
Sbjct: 371 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCET----KK--NVTEMAMNPHIKQN 414
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H + Q R +K F K LV T+ A+RG+D VD V+ P+D
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFK----VLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 621 EY 622
Y
Sbjct: 471 SY 472
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 300 (110.7 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 100/389 (25%), Positives = 188/389 (48%)
Query: 168 AMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKS 227
A+ N K++ + +K T E+ + + N V E +K R K +
Sbjct: 16 AVESPMTNKKKKKSKKNKHTEENHEVEEVPQEVT-NGVEEELSNKEKKKKRKREEKESEK 74
Query: 228 GTKIDRGWRSGGSIHNLQYEPTDCPKQ--RHKYSADGDFFSRKSFKELGCSDYMIESLKR 285
K D + + +L ++ K K + + + K+F E + +++ K
Sbjct: 75 NKKKDVPEKKLEA-EDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCK- 132
Query: 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL--RQEELQGLSKSTS 343
F +PS IQ+ +P +++G+ I ++GSGKTLA+ +P I + + +++ G SK +
Sbjct: 133 -TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVN 191
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
P ++L+PT ELA Q+ R + CG+ +S+ V GG + Q+ ++ GVD++I
Sbjct: 192 --PTCLVLSPTRELAVQISDVLREAGEPCGL--KSICVYGGSSKGPQISAIRSGVDIVIG 247
Query: 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
TPGR LI+ +L+L ++ +LDE D + D FE ++ ++S++ Q + +AT
Sbjct: 248 TPGRLRDLIESNVLRLSDVSFVVLDEADRML-DMGFEEPVRFILSNTNKVRQMVMFSATW 306
Query: 463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
P++++ KL + F D P ++ G + + Q + E A + ALL+
Sbjct: 307 PLDVH-KLAQEFMD------PNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLE 359
Query: 523 LIEKSPVSKTIVFCNKIVTCRKVENILKR 551
KS ++ +VF V ++E L++
Sbjct: 360 KYHKSQKNRVLVFALYKVEAERLERFLQQ 388
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 244 (91.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 68/222 (30%), Positives = 118/222 (53%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S FK+LG + ++++L NF + ++IQ A P + G+ + + ++GSGKTLA++LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + L+ + S PR +IL PT ELA QV RS+ G+ + + ++TGG
Sbjct: 63 MLHK----SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLG-GLSYTATLITGGEN 116
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q++ L G ++ATPGR + L L L +LDE D + D F L+ +
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRML-DLGFAKELRRI 175
Query: 446 ISSSPVTA-QYLFVTATLP-VEIYNKLVEVFPDCK-VVMGPG 484
+++ Q L +ATL ++ + +E+ + K + +G G
Sbjct: 176 HNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVG 217
Score = 100 (40.3 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 31/110 (28%), Positives = 53/110 (48%)
Query: 514 LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
L+ K ALL +++ + + I+F T + + ++ + + ++ + L+Q
Sbjct: 234 LDHKEALLDRILADAEYRQVIIFT---ATRADTDRLTEKLN--QNNLKAVALSGNLNQTQ 288
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R M +F + K LV TD ASRG+D V HV+ FD P+ EY
Sbjct: 289 RNTIMGQFERAVFK----ILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 334
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 244 (91.0 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 68/222 (30%), Positives = 118/222 (53%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S FK+LG + ++++L NF + ++IQ A P + G+ + + ++GSGKTLA++LP
Sbjct: 3 STLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + L+ + S PR +IL PT ELA QV RS+ G+ + + ++TGG
Sbjct: 63 MLHK----SLKTKAFSAK-DPRGLILVPTRELAKQVYGELRSMLG-GLSYTATLITGGEN 116
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q++ L G ++ATPGR + L L L +LDE D + D F L+ +
Sbjct: 117 FNDQVKALARGPRFIVATPGRLADHLDHRSLFLEGLETLVLDEADRML-DLGFAKELRRI 175
Query: 446 ISSSPVTA-QYLFVTATLP-VEIYNKLVEVFPDCK-VVMGPG 484
+++ Q L +ATL ++ + +E+ + K + +G G
Sbjct: 176 HNAAKHRRRQTLMFSATLDHADVNDMAMELLNEPKRIAIGVG 217
Score = 100 (40.3 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 31/110 (28%), Positives = 53/110 (48%)
Query: 514 LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
L+ K ALL +++ + + I+F T + + ++ + + ++ + L+Q
Sbjct: 234 LDHKEALLDRILADAEYRQVIIFT---ATRADTDRLTEKLN--QNNLKAVALSGNLNQTQ 288
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R M +F + K LV TD ASRG+D V HV+ FD P+ EY
Sbjct: 289 RNTIMGQFERAVFK----ILVTTDVASRGLDIPAVTHVINFDMPKHTEEY 334
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 239 (89.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 76/263 (28%), Positives = 136/263 (51%)
Query: 265 FSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+ +F ELG ++I ++ + +Q + P ++EG+ ++ Q+GSGKTLAY
Sbjct: 227 FTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYC 286
Query: 324 LPVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--- 379
+PV+Q L+ E SK S P ++L PT ELA Q + L K PF +V
Sbjct: 287 IPVVQSLQAME----SKIQRSDGPYALVLVPTRELALQSFDTVQKLLK---PFTWIVPGV 339
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFN---D 435
+ GG ++K++ L++G+++LI+TPGR + IK + LR + DE D + + +
Sbjct: 340 LMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFE 399
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISP-- 490
+D V L + +++ Q + ++ATL E +L ++ P V+ +++P
Sbjct: 400 KDITVILNA-VNAECQKRQNVLLSATL-TEGVTRLADISLHDPVSISVLDKSHDQLNPKD 457
Query: 491 -GLEEFLVDCSGDQ-ESDKTPET 511
++E +GD+ +S PE+
Sbjct: 458 KAVQEVCPPPAGDKLDSFAIPES 480
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
R++ L H ++QE R A +EF+ SR R L+CTD A+RG+D V +V ++ P
Sbjct: 552 RLKFLRLHGGMEQEERTAVFQEFSHSR----RGVLLCTDVAARGLDLPQVTWIVQYNAPS 607
Query: 618 DPSEY 622
P+EY
Sbjct: 608 SPAEY 612
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 303 (111.7 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 98/365 (26%), Positives = 168/365 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E ++ M +++ + + + IQ A P V +G + Q+GSGKT A+LLP++
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM 400
Query: 328 QRLRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL + L+ + G PR +IL PT ELA Q+ + R + + V GG
Sbjct: 401 TRLIDDN--NLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTM-MEIKPVYGGLA 457
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+++G +++ T GR +EG ++L R +LDE D + + F ++++
Sbjct: 458 VGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETI 517
Query: 446 IS--SSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG----LEEFLV 497
++ S P Q L +AT P + + F VM + +I L+EF
Sbjct: 518 VNYDSMPRKENRQTLMFSATFPDSV-QEAARAFLRENYVM-IAIDKIGAANKCVLQEF-E 574
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C ++ DK E ++ S + + KT+VF ++ + +IL
Sbjct: 575 RCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILS-----SA 629
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+V + H A +Q R +++F SK L+ T A RG+D GVDHV+ +D P
Sbjct: 630 QVPAITIHGAREQRERSEALRQFRNG-SKPV---LIATAVAERGLDIKGVDHVINYDMPD 685
Query: 618 DPSEY 622
+ +Y
Sbjct: 686 NIDDY 690
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 303 (111.7 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 98/365 (26%), Positives = 168/365 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E ++ M +++ + + + IQ A P V +G + Q+GSGKT A+LLP++
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM 400
Query: 328 QRLRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL + L+ + G PR +IL PT ELA Q+ + R + + V GG
Sbjct: 401 TRLIDDN--NLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTM-MEIKPVYGGLA 457
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+++G +++ T GR +EG ++L R +LDE D + + F ++++
Sbjct: 458 VGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETI 517
Query: 446 IS--SSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG----LEEFLV 497
++ S P Q L +AT P + + F VM + +I L+EF
Sbjct: 518 VNYDSMPRKENRQTLMFSATFPDSV-QEAARAFLRENYVM-IAIDKIGAANKCVLQEF-E 574
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C ++ DK E ++ S + + KT+VF ++ + +IL
Sbjct: 575 RCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILS-----SA 629
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+V + H A +Q R +++F SK L+ T A RG+D GVDHV+ +D P
Sbjct: 630 QVPAITIHGAREQRERSEALRQFRNG-SKPV---LIATAVAERGLDIKGVDHVINYDMPD 685
Query: 618 DPSEY 622
+ +Y
Sbjct: 686 NIDDY 690
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 302 (111.4 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 111/428 (25%), Positives = 198/428 (46%)
Query: 208 ESIDKNISDYNSRSNKHEK---SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF 264
E + +SD S+S+K + S ID + + +L + + + +
Sbjct: 77 EGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDNKLEETLTREQ 136
Query: 265 FSRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+F S+ I+ LK + ++L P IQ F PV EGK I ++G+GKT ++
Sbjct: 137 -KEGAFSNFPISEETIKLLKGRGVSYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSF 193
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+P+I+RL++ + + + KS S P+V++LAPT ELA+QV + + +++ G
Sbjct: 194 AIPLIERLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYG 247
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDF 438
G ++Q+ +++ G+D+L+ TPGR ++ G L L LR +LDEVD + F ++
Sbjct: 248 GTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVE 307
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEE 494
++ +S + S Q L +AT P +Y K+ + + + ++G + + +E
Sbjct: 308 DIIHESYKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEH 366
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+ C Q P A + +LQ+ S + I+FC +K N+ +
Sbjct: 367 LAIQCHWSQR----P--AVIGD---VLQVYSGSE-GRAIIFCET----KK--NVTEMAMN 410
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
+ H + Q R +K F K LV T+ A+RG+D VD V+
Sbjct: 411 PHIKQNAQCLHGDIAQSQREITLKGFREGSFK----VLVATNVAARGLDIPEVDLVIQSS 466
Query: 615 FPRDPSEY 622
P+D Y
Sbjct: 467 PPQDVESY 474
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 226 (84.6 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 65/241 (26%), Positives = 125/241 (51%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG S ++++++R F + IQA P ++ K I Q+G+GKT A+ +P+++
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
++ + + + + +++APT ELA QV L K G R V + GG
Sbjct: 63 KVNVK---------NSAVQALVVAPTRELAIQV---SEELYKIGAVKRVRVLPIYGGQDI 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ L++ V++ TPGR + I G L+L ++ +LDE D + N F +++++
Sbjct: 111 ERQIRALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLN-MGFIEDIEAIL 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
S P Q L +AT+P I ++ E F + ++V P ++++ ++ ++
Sbjct: 170 SHVPAERQTLLFSATMPDPI-RRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKF 228
Query: 506 D 506
D
Sbjct: 229 D 229
Score = 120 (47.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 42/146 (28%), Positives = 64/146 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L +L++ IVF T R+V+ + + + + + H L Q RL+
Sbjct: 227 KFDILTRLLDIQAPELAIVFGR---TKRRVDELAEALNLRGYAAEGI--HGDLSQAKRLS 281
Query: 576 NMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXX 634
+++F KE + LV TD A+RG+D +GV HV FD P+DP Y
Sbjct: 282 VLRKF-----KEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGK 336
Query: 635 XXXKAFIFVVGKQVSLAQRIMERNRK 660
A FV +++ I ER K
Sbjct: 337 TGV-AMTFVTPREIGQLHHI-ERTTK 360
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 302 (111.4 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 99/362 (27%), Positives = 171/362 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 194
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + +++ GG ++
Sbjct: 195 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQS 248
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
Q+ ++ G+D+L+ TPGR ++ G L L LR +LDEVD + F ++ ++ +S
Sbjct: 249 QINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHES 308
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
+ S Q L +AT P +Y K+ + + + ++G + + +E + C
Sbjct: 309 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 367
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
Q P A + +LQ+ S + I+FC +K N+ + +
Sbjct: 368 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCET----KK--NVTEMAMNPHIKQN 411
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H + Q R +K F K LV T+ A+RG+D VD V+ P+D
Sbjct: 412 AQCLHGDIAQSQREITLKGFREGSFK----VLVATNVAARGLDIPEVDLVIQSSPPQDVE 467
Query: 621 EY 622
Y
Sbjct: 468 SY 469
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 302 (111.4 bits), Expect = 1.6e-23, P = 1.6e-23
Identities = 111/428 (25%), Positives = 198/428 (46%)
Query: 208 ESIDKNISDYNSRSNKHEK---SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDF 264
E + +SD S+S+K + S ID + + +L + + + +
Sbjct: 76 EGCNNRLSDEFSKSHKSRRKDLSNGDIDEYEKKSKRVSSLDSSTHKSSDNKLEETLTREQ 135
Query: 265 FSRKSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+F S+ I+ LK + ++L P IQ F PV EGK I ++G+GKT ++
Sbjct: 136 -KEGAFSNFPISEETIKLLKGRGVSYLFP--IQVKTFGPVYEGKDLIAQARTGTGKTFSF 192
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+P+I+RL++ + + + KS S P+V++LAPT ELA+QV + + +++ G
Sbjct: 193 AIPLIERLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYG 246
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDF 438
G ++Q+ +++ G+D+L+ TPGR ++ G L L LR +LDEVD + F ++
Sbjct: 247 GTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVE 306
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEE 494
++ +S + S Q L +AT P +Y K+ + + + ++G + + +E
Sbjct: 307 DIIHESYKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEH 365
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+ C Q P A + +LQ+ S + I+FC +K N+ +
Sbjct: 366 LAIQCHWSQR----P--AVIGD---VLQVYSGSE-GRAIIFCET----KK--NVTEMAMN 409
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
+ H + Q R +K F K LV T+ A+RG+D VD V+
Sbjct: 410 PHIKQNAQCLHGDIAQSQREITLKGFREGSFK----VLVATNVAARGLDIPEVDLVIQSS 465
Query: 615 FPRDPSEY 622
P+D Y
Sbjct: 466 PPQDVESY 473
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 243 (90.6 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 60/185 (32%), Positives = 103/185 (55%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++ ++++ F +P+ IQ+ A+P +++G I Q+G+GKTLAYL+P L Q +
Sbjct: 251 IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLAS---QPI 307
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K G P +++LAPT ELA QV + C + G F+S+ + GG +K Q+ + +GVD
Sbjct: 308 PKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG--FKSICIYGGGDRKAQINVVTKGVD 365
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L ++ + +E D + D FE + ++ Q + +
Sbjct: 366 IVIATPGRLNDLQMNNFINLKSITY-LANEADRML-DMGFEPQIMKILIDVRPDRQTVMM 423
Query: 459 TATLP 463
+AT P
Sbjct: 424 SATWP 428
Score = 107 (42.7 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 50/172 (29%), Positives = 76/172 (44%)
Query: 465 EIYNKLVEVFPDCKVVM----GP-GMHRISPG-LEEFLVDCSG--DQESDKTPETAFL-- 514
+I L++V PD + VM P G+ R++ L ++ G D + T E +
Sbjct: 406 QIMKILIDVRPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVI 465
Query: 515 ---NKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
KK+ + I+ P K I+F K T + + D V V H +Q
Sbjct: 466 NEEEKKAFMENFIDSMKPKDKAIIFVGKKSTADDIAS-----DLGVQGVPVQSLHGDREQ 520
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R + +F + + R+ LV TD ASRG+D + HV FDFPR+ EY
Sbjct: 521 CDREQALDDF---KKGKVRI-LVATDLASRGLDVHDITHVFNFDFPRNIEEY 568
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 300 (110.7 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 103/369 (27%), Positives = 175/369 (47%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 179 ENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 239 SQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 297
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 298 VVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 356
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 357 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR--------- 406
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
V + + + K L+K+S LL L+ + S T+VF V +K + L+ F
Sbjct: 407 --VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVF----VETKKGADSLENFL 460
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
+E R H Q+ R + +F + R LV T A+RG+D + V HV+ F
Sbjct: 461 FQE-RYACTSIHGDRSQKDREEALHQFRSGRKP----ILVATAVAARGLDISNVKHVINF 515
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 516 DLPSDIEEY 524
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 301 (111.0 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 99/362 (27%), Positives = 172/362 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + +++ GG ++
Sbjct: 198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQS 251
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
Q+ +++ G+D+L+ TPGR ++ G L L LR +LDEVD + F ++ ++ +S
Sbjct: 252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHES 311
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
+ S Q L +AT P +Y K+ + + + ++G + + +E + C
Sbjct: 312 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
Q P A + +LQ+ S + I+FC +K N+ + +
Sbjct: 371 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCET----KK--NVTEMAMNPHIKQN 414
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H + Q R +K F K LV T+ A+RG+D VD V+ P+D
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFK----VLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 621 EY 622
Y
Sbjct: 471 SY 472
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 227 (85.0 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 61/211 (28%), Positives = 109/211 (51%)
Query: 253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
K R +AD F++ ++ + + + +PS IQ + + G+ +
Sbjct: 28 KDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARA 87
Query: 313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
++G+GKT AY +PVI+++ Q L+ + + +++ PT ELA Q C LSK
Sbjct: 88 KNGTGKTGAYCIPVIEKI-QPALKAI--------QAMVIVPTRELALQTSQICVELSK-H 137
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432
+ + MV TGG + + L V ++IATPGR + L+++G+ ++ + + +LDE D L
Sbjct: 138 IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKL 197
Query: 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
+ +DF+ L LI+ P Q + +AT P
Sbjct: 198 LS-QDFQGILDRLINFLPKERQVMLYSATFP 227
Score = 115 (45.5 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 34/114 (29%), Positives = 55/114 (48%)
Query: 512 AFLNKKS---ALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AF+ +K L L K ++++I+FCN + ++VE + K+ E H+ +
Sbjct: 260 AFVQEKQKVHCLNTLFRKLQINQSIIFCN---STQRVELLAKKIT--EIGYSCYYIHSKM 314
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q R +F + LVC+D +RGID V+ V+ FDFPR+ Y
Sbjct: 315 AQNHRNRVFHDFRQGNCRN----LVCSDLLTRGIDIQAVNVVINFDFPRNAETY 364
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 227 (85.0 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 61/211 (28%), Positives = 109/211 (51%)
Query: 253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
K R +AD F++ ++ + + + +PS IQ + + G+ +
Sbjct: 28 KDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARA 87
Query: 313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
++G+GKT AY +PVI+++ Q L+ + + +++ PT ELA Q C LSK
Sbjct: 88 KNGTGKTGAYCIPVIEKI-QPALKAI--------QAMVIVPTRELALQTSQICVELSK-H 137
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432
+ + MV TGG + + L V ++IATPGR + L+++G+ ++ + + +LDE D L
Sbjct: 138 IQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKL 197
Query: 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
+ +DF+ L LI+ P Q + +AT P
Sbjct: 198 LS-QDFQGILDRLINFLPKERQVMLYSATFP 227
Score = 115 (45.5 bits), Expect = 2.1e-23, Sum P(2) = 2.1e-23
Identities = 34/114 (29%), Positives = 55/114 (48%)
Query: 512 AFLNKKS---ALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AF+ +K L L K ++++I+FCN + ++VE + K+ E H+ +
Sbjct: 260 AFVQEKQKVHCLNTLFRKLQINQSIIFCN---STQRVELLAKKIT--EIGYSCYYIHSKM 314
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q R +F + LVC+D +RGID V+ V+ FDFPR+ Y
Sbjct: 315 AQNHRNRVFHDFRQGNCRN----LVCSDLLTRGIDIQAVNVVINFDFPRNAETY 364
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 236 (88.1 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 69/255 (27%), Positives = 128/255 (50%)
Query: 254 QRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQ 313
Q+ K+ +F+ + D ++ + F PS IQ+ A ++ GK I Q
Sbjct: 9 QKLKFKTSKKLKVSSTFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQ 68
Query: 314 SGSGKTLAYLLPVIQR--LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
SG+GKT + + ++Q LR+++LQ L IL+PT ELASQ+ ++L
Sbjct: 69 SGTGKTATFTIGLLQAIDLRKKDLQAL-----------ILSPTRELASQIGQVVKNLGDY 117
Query: 372 GVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
+ + +TGG K L+ +Q+ G + TPGR + +IK+ +LQ N++ +LDE D
Sbjct: 118 -MNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEAD 176
Query: 431 ILFNDE-DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS 489
L ++ F+ + + + P Q + V+AT+ +I ++ F + V + IS
Sbjct: 177 ELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL-EVTRKFMNDPVKILVKRDEIS 235
Query: 490 -PGLEEFLVDCSGDQ 503
G+++++V+ ++
Sbjct: 236 LEGIKQYVVNVDKEE 250
Score = 102 (41.0 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 30/107 (28%), Positives = 51/107 (47%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L + + +++ ++FCN T +KV+ + +R ++ V+ H + QE R
Sbjct: 252 KFDTLCDIYDSLTITQCVIFCN---TKKKVDWLSQRLI--QSNFAVVSMHGDMKQEERDK 306
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
M +F T S+ L+ TD +RGID V V+ +D P Y
Sbjct: 307 VMNDFRTGHSR----VLISTDVWARGIDVQQVSLVINYDLPEIIENY 349
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 301 (111.0 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 106/368 (28%), Positives = 172/368 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 222 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 281
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 282 SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 340
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 341 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 399
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 400 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 456
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+ESDK +FL LL E S T+VF V +K + L+ F
Sbjct: 457 ITQKVVWVEESDKR---SFLLD---LLNATESGKDSLTLVF----VETKKGADSLEDFLY 506
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
E H Q R + +F + +S LV T A+RG+D + V HV+ FD
Sbjct: 507 HEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINFD 561
Query: 615 FPRDPSEY 622
P D EY
Sbjct: 562 LPSDIEEY 569
Score = 45 (20.9 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 207 AESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
+ S DK+ S + SRS+ KS DRG S G
Sbjct: 103 SSSKDKDAYSSFGSRSDSRGKSSFFSDRGSGSRG 136
Score = 44 (20.5 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 211 DKNISDYNSRSNKHEKSGT-KIDRGWRS 237
D+ SDY+ ++ ++SG K +RG S
Sbjct: 140 DRGRSDYDGIGSRGDRSGFGKFERGGNS 167
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 260 (96.6 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 82/286 (28%), Positives = 138/286 (48%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSG--TKIDRGWRSGGSIHNLQYEPTDCPKQRHKYS 259
+N+ +S D + S N NK++K T+ D+ R + N D +
Sbjct: 136 ENENSDDSDDSDDSGKNKNKNKNKKVSKETQEDKHKREIATFRNKHRIKVDGTDIPDPMT 195
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
+R FK Y++ ++ + PS IQ P +++ + + +GSGKT
Sbjct: 196 EFSQLENR--FK---VRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKT 250
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
++ +P++Q L + + +G R VI+APT ELA Q+ N R LSK G PFR V
Sbjct: 251 ASFSIPILQALYEPKKEGF--------RSVIIAPTRELAQQIYRNFRLLSK-GKPFRICV 301
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
++ ++ ENL + D+LI TP R ++LIKE +L L + + DE D LF D++F+
Sbjct: 302 LSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLLSLNKVEYLVFDEADKLF-DKNFQ 360
Query: 440 VALQSLISS--SPVTAQYLF-VTATLPVEIYNKLVEVFPDCKVVMG 482
+ ++++ +P LF T VE + P K+++G
Sbjct: 361 EQVDIVVTACQNPKLKICLFSATMNQQVEELGHSIMKNP-IKIIIG 405
Score = 88 (36.0 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K A+ QLI+K ++F + + ++ + V V+ H+ Q R
Sbjct: 427 KLLAVRQLIQKGLEPPILIFTQ---SKERAHDLFQELIFDGINVDVI--HSERTQFQRDT 481
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+K+F + L+CT+ +RG+DF GV+ V+ FDFP + Y
Sbjct: 482 IVKKFRMGKI----WVLICTELMARGMDFKGVNFVINFDFPHTLASY 524
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 294 (108.6 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 105/369 (28%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 240 SQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 298
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 357
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 414
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
+ESDK +S LL L+ + S T+VF V +K + L+ F
Sbjct: 415 ITQKVVWVEESDK---------RSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 461
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 462 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 516
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 517 DLPSDIEEY 525
Score = 51 (23.0 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKN---ISDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D S +K+ S + SR++ KS DRG S G
Sbjct: 41 PHLRN-REATKGFYDKDSSGWSSNKDKDAYSSFGSRNDSRGKSSFFSDRGSGSRG 94
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 218 (81.8 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 59/193 (30%), Positives = 101/193 (52%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +LK +F+ ++IQ P ++G+ + A ++GSGKTLA+++P+I+
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +++ L G +VI +PT ELA Q + + F + ++ GG K +
Sbjct: 101 LYRKKWTSLD----GLGALVI-SPTRELAIQTFETLVKIGRLH-SFSAGLIIGGNNYKEE 154
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E L +++L+ TPGR + I + + L+ ILDE D + D F L +++SS
Sbjct: 155 KERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRIL-DMGFRTTLDAIVSS 212
Query: 449 SPVTAQYLFVTAT 461
PV Q + +AT
Sbjct: 213 LPVHRQTMLFSAT 225
Score = 134 (52.2 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 531 KTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL 590
KTIVF + +C++V + + F R + +L H Q TR +FT+SR +
Sbjct: 285 KTIVFLS---SCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSR----HV 337
Query: 591 FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
L CTD +RG+DF VD V+ D P D Y
Sbjct: 338 VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 221 (82.9 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 65/248 (26%), Positives = 123/248 (49%)
Query: 225 EKSG-TKIDRGWRSGGSIHNLQYEPTDCPK---QRHKYS---ADGDFFSRKSFKELGCSD 277
E+ G T + + ++ ++ N+Q + D + Q K++ D S +F+ LG ++
Sbjct: 8 EEGGITIMSKSRKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAE 67
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
+ +E+ K +P+ +Q P ++ G+ + Q+GSGKT A+ LP++ RL E+ G
Sbjct: 68 WAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLA-EDPYG 126
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
+ +++ PT ELA Q+ ++L C + R V+ GG TQ +L
Sbjct: 127 VF--------ALVVTPTRELAFQLAEQFKALGSC-LNLRCSVIVGGMDMLTQTMSLVSRP 177
Query: 398 DVLIATPGRFMFLIKEG--ILQLIN-LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
++I TPGR L++ + + + + +LDE D + D F+ L+++ P + Q
Sbjct: 178 HIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVL-DVGFQDELRTIFQCLPKSRQ 236
Query: 455 YLFVTATL 462
L +AT+
Sbjct: 237 TLLFSATM 244
Score = 124 (48.7 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
+L +E + ++F + TCR + + D E V + H+ Q RL+ + +
Sbjct: 293 ILSQMEDKGIRSAMIF---VSTCRTCQRLSLMLD--ELEVENIAMHSLNSQSMRLSALSK 347
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + + L+ TD ASRG+D VD V+ +D PRDP +Y
Sbjct: 348 FKSGKVP----ILLATDVASRGLDIPTVDLVINYDIPRDPRDY 386
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 300 (110.7 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 99/362 (27%), Positives = 172/362 (47%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F S+ I+ LK + IQ F PV EGK I ++G+GKT ++ +P+I+
Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIE 197
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL++ + + + KS S P+V++LAPT ELA+QV + + +++ GG ++
Sbjct: 198 RLQRNQ-ETIKKSRS--PKVLVLAPTRELANQVAKDFKDVTR---KLSVACFYGGTSYQS 251
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
Q+ +++ G+D+L+ TPGR ++ G L L LR +LDEVD + F ++ ++ +S
Sbjct: 252 QINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHES 311
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV----VMGPGMHRISPGLEEFLVDCS 500
+ S Q L +AT P +Y K+ + + + ++G + + +E + C
Sbjct: 312 YKTDSEDNPQTLLFSATCPQWVY-KVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCH 370
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
Q P A + +LQ+ S + I+FC +K N+ + +
Sbjct: 371 WSQR----P--AVIGD---VLQVYSGSE-GRAIIFCET----KK--NVTEMAMNPHIKQN 414
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H + Q R +K F K LV T+ A+RG+D VD V+ P+D
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFK----VLVATNVAARGLDIPEVDLVIQSSPPQDVE 470
Query: 621 EY 622
Y
Sbjct: 471 SY 472
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 258 (95.9 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 98/337 (29%), Positives = 152/337 (45%)
Query: 225 EKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIES 282
E GT D ++S G I+ Y+ D P + A GD SF + ++E+
Sbjct: 149 ELFGTADDSHFQSSG-INFDNYD--DIPVE-----ASGDKVPEPITSFTAPPLDELLVEN 200
Query: 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE------ELQ 336
++ F +P+ +Q + P V G+ + Q+GSGKT +L PV+ + E
Sbjct: 201 IQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESN 260
Query: 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQKTQLENLQE 395
G S P ++++APT EL SQ+ + S + V R+ VV GG Q+ N+
Sbjct: 261 GAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWV--RACVVYGGADIGQQMRNMDR 318
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA-- 453
G D+L+ATPGR L+ G + L N+R +LDE D + D FE ++ ++ + A
Sbjct: 319 GCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRML-DMGFEPQIRYIVEECDMPAVK 377
Query: 454 --QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
Q L +AT P +I L F V + G R+ E + E D+
Sbjct: 378 DRQTLMFSATFPRDI-QMLARDFLKDYVFLSVG--RVG-STSENITQKILYVEDDE---- 429
Query: 512 AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
KKS +L L+ + TIVF T R +N+
Sbjct: 430 ----KKSVILDLLSANENGLTIVFTE---TKRMADNL 459
Score = 92 (37.4 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 32/108 (29%), Positives = 48/108 (44%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR-FDRKETRVRVLPFHAALDQETRL 574
KKS +L L+ + TIVF T R +N+ +D+ + + ++E L
Sbjct: 430 KKSVILDLLSANENGLTIVFTE---TKRMADNLADYLYDQGFPATAIHGDRSQYEREKAL 486
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
A K A LV T A+RG+D V HV+ +D P D +Y
Sbjct: 487 AAFKN-------GAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDY 527
Score = 39 (18.8 bits), Expect = 2.7e-23, Sum P(3) = 2.7e-23
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 213 NISDYNSRSNKHEKSGTKIDRG-WRSGG 239
N +N+R N ++ G + RG + +GG
Sbjct: 92 NNGGFNNRGNYNQSFGGRGGRGGFNNGG 119
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 211 (79.3 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 62/202 (30%), Positives = 106/202 (52%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+LG +D + E+ + + +P++IQ A P ++G+ I ++GSGKT A+ LP++
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQ 386
L E Q L ++L PT ELA Q+ +L S GV +S V+ GG
Sbjct: 84 NALL-ETPQRLF--------ALVLTPTRELAFQISEQFEALGSSIGV--QSAVIVGGIDS 132
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+Q L + ++IATPGR + ++ +G L L+ ++DE D + N DFE +
Sbjct: 133 MSQSLALAKKPHIIIATPGRLIDHLENTKGF-NLRALKYLVMDEADRILN-MDFETEVDK 190
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
++ P + +AT+ ++
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKV 212
Score = 133 (51.9 bits), Expect = 2.8e-23, Sum P(2) = 2.8e-23
Identities = 43/154 (27%), Positives = 66/154 (42%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L+ ++ + + ++FC+ TC + + +P H + Q RL
Sbjct: 250 KDTYLVYILNELAGNSFMIFCS---TCNNTQRTALLL--RNLGFTAIPLHGQMSQSKRLG 304
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
++ +F ++K AR L+ TD ASRG+D VD VV FD P +Y
Sbjct: 305 SLNKF---KAK-ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 360
Query: 636 XXKAFIFVVGKQVSLAQRI---MERNRKGHPLHD 666
KA FV V L QRI + + G P D
Sbjct: 361 G-KAITFVTQYDVELFQRIEHLIGKKLPGFPTQD 393
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 286 (105.7 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 101/368 (27%), Positives = 170/368 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 178 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 237
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 238 SQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 296
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 355
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 356 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 412
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+E+DK +S LL L+ + I+ V +K + L+ F
Sbjct: 413 ITQKVVWVEEADK---------RSFLLDLLNATGKDSLILV---FVETKKGADSLEDFLY 460
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
E H Q R + +F + +S LV T A+RG+D + V HV+ FD
Sbjct: 461 HEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINFD 515
Query: 615 FPRDPSEY 622
P D EY
Sbjct: 516 LPSDIEEY 523
Score = 59 (25.8 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D S DK+ S + SRS+ KS DRG S G
Sbjct: 41 PHLRN-REATKASYDKDSSRWSKDKDAYSSFGSRSDTRAKSSFFSDRGSGSRG 92
Score = 38 (18.4 bits), Expect = 4.5e-21, Sum P(2) = 4.5e-21
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 194 RELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID 232
R + H+ + + S DK+ S ++ + + G++ D
Sbjct: 37 RYIPPHLRNREATKASYDKDSSRWSKDKDAYSSFGSRSD 75
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 286 (105.7 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 101/368 (27%), Positives = 170/368 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 179 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 239 SQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 297
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 298 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 356
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 357 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 413
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+E+DK +S LL L+ + I+ V +K + L+ F
Sbjct: 414 ITQKVVWVEEADK---------RSFLLDLLNATGKDSLILV---FVETKKGADSLEDFLY 461
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
E H Q R + +F + +S LV T A+RG+D + V HV+ FD
Sbjct: 462 HEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINFD 516
Query: 615 FPRDPSEY 622
P D EY
Sbjct: 517 LPSDIEEY 524
Score = 59 (25.8 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 188 PSLENFRELGEHIVDNDVPAESIDKNI-SDYNSRSNKHEKSGTKIDRG 234
P L N RE + D D S DK+ S + SRS+ KS DRG
Sbjct: 41 PHLRN-REAAKAFYDKDGSRWSKDKDAYSSFGSRSDTRAKSSFFSDRG 87
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 255 (94.8 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 62/194 (31%), Positives = 105/194 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +LLP+ +R
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K ++ ++ GG + + Q
Sbjct: 157 LKARSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 208
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++IATPGR + + E L+L ++ + DE D LF + F LQ +I
Sbjct: 209 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIGRL 267
Query: 450 PVTAQYLFVTATLP 463
P Q + +ATLP
Sbjct: 268 PGGHQTVLFSATLP 281
Score = 97 (39.2 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 36/134 (26%), Positives = 64/134 (47%)
Query: 491 GLEE-FLVDCSGDQESDKTPETAFL-----NKKSALLQLIEK--SPVSKTIVFCNKIVTC 542
GL E L+ D + ++ +T+F K + LL L++ P + +VF + T
Sbjct: 291 GLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVF---VATK 347
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
E + + + V ++ALDQ R N+ +FT ++ L+ TD A+RG+
Sbjct: 348 HHAEYLTELLTGQG--VSCAHIYSALDQTARKINLAKFTHNKCST----LIVTDLAARGL 401
Query: 603 DFAGVDHVVLFDFP 616
D +D+V+ + FP
Sbjct: 402 DIPLLDNVINYSFP 415
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 260 (96.6 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 60/202 (29%), Positives = 111/202 (54%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++S+ R ++P+ IQ+ A+P +++G I+ Q+G+GKTL+YL+P L + Q +
Sbjct: 233 LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL---DSQPI 289
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA V + C S G+ +S+ + GG + Q+E++ +GVD
Sbjct: 290 SREQRNGPGMLVLTPTRELALHVEAECSKYSYKGL--KSICIYGGRNRNGQIEDISKGVD 347
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L ++ ++DE D + D +FE ++ ++ Q +
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML-DMEFEPQIRKILLDVRPDRQTVMT 406
Query: 459 TATLPVEIYNKLVEVFPDCKVV 480
+AT P + + D +V
Sbjct: 407 SATWPDTVRQLALSYLKDPMIV 428
Score = 86 (35.3 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 516 KKSALLQ-LIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
+K AL Q +E SP K I+F V+ + + + L D + H +Q +
Sbjct: 452 EKRALTQEFVENMSPNDKVIMF----VSQKHIADDLSS-DFNIQGISAESLHGNSEQSDQ 506
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+++F + K L+ TD SRG+D V HV +DFPR+ Y
Sbjct: 507 ERAVEDFKSGNIK----ILITTDIVSRGLDLNDVTHVYNYDFPRNIDVY 551
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 297 (109.6 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 105/398 (26%), Positives = 183/398 (45%)
Query: 195 ELGEHIVDNDVPAESIDKNISDYN-SRSNKHEK--SGTKIDRGWR-SGGSIHNLQYEPTD 250
E + +D ES K+I + S K EK S +K D+ + ++ PT+
Sbjct: 34 ESSDESSSSDSEVESKSKSIKKSSKSEEKKSEKKSSSSKEDKEEEVKEETKEDIVLSPTE 93
Query: 251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKR---QNFLRPSQIQAMAFPPVVEGKS 307
K +H +G F++ +DY + + Q F P+ IQ ++P ++ G
Sbjct: 94 WRK-KHNVLIEGKS-QPNPFQKF--TDYEFPRMFQHIFQGFTAPTVIQGQSWPIILGGND 149
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
+ +GSGKTLA+LLP + ++ + S +P V+++APT ELA Q+ C++
Sbjct: 150 LVGLAATGSGKTLAFLLPALLKIISLPKR---PSYGATPLVLVMAPTRELAQQIEEVCKT 206
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
+ G R + GG + Q L+ GVD++I TPGR L+++ L +++ +LD
Sbjct: 207 SIR-GTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLLRKH--HLSSVQYLVLD 263
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMH 486
E D + D F ++SLI P Q L +AT P E+ + D K+ +G
Sbjct: 264 EADRML-DMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQEL 322
Query: 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVE 546
S + + +V+ D SD + ++ + +++ P + IVFCN+ C +
Sbjct: 323 TGSINVTQHIVNI--DDLSDLQSDDLIYDE---INKILTADPTNTVIVFCNEKYKCDDFQ 377
Query: 547 NILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584
+ L + V+ + H+ DQ R + +K F R
Sbjct: 378 HYLST----QKNVKSIVLHSGKDQRMRESGLKLFRDHR 411
Score = 257 (95.5 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 79/283 (27%), Positives = 135/283 (47%)
Query: 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVL 400
S +P V+++APT ELA Q+ C++ + G R + GG + Q L+ GVD++
Sbjct: 180 SYGATPLVLVMAPTRELAQQIEEVCKTSIR-GTSIRQLCAYGGLGKIDQSRILRNGVDIV 238
Query: 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460
I TPGR L+++ L +++ +LDE D + D F ++SLI P Q L +A
Sbjct: 239 IGTPGRLNDLLRKH--HLSSVQYLVLDEADRML-DMGFMPQIESLIDQIPKERQTLMFSA 295
Query: 461 TLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
T P E+ + D K+ +G S + + +V+ D SD + ++
Sbjct: 296 TWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNI--DDLSDLQSDDLIYDE--- 350
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
+ +++ P + IVFCN+ C ++ L + V+ + H+ DQ R + +K
Sbjct: 351 INKILTADPTNTVIVFCNEKYKCDDFQHYLST----QKNVKSIVLHSGKDQRMRESGLKL 406
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F R R+ L+ TD A+RG+D V V + P + +Y
Sbjct: 407 F---RDHRIRI-LIATDVAARGLDIPSVKAVFNYRLPGNIEDY 445
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 299 (110.3 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 116/420 (27%), Positives = 187/420 (44%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ++ D ++ ++K + +P+ +Q A P +++ + + Q+GSGKT A+L P+I
Sbjct: 248 SFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIIS 307
Query: 329 RLRQE---ELQGLSKS---TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+ + E K + PR ++LAPT ELA Q+ S G P S+V+ G
Sbjct: 308 GILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSY-GSPVSSVVIYG 366
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+ L G D+L+AT GR + L+ G + L ++ +LDE D + D FE +
Sbjct: 367 GAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRML-DMGFEPQI 425
Query: 443 QSLISSSPVTA----QYLFVTATLPVEIYNKLVEVFPD---CKV-VMGPGMHRISPGLEE 494
+ +IS + Q L +AT P +I N + + KV V+G + I+ +E
Sbjct: 426 RQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQN-ITQRIE- 483
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
++V E DK + L+ S L KS ++F +C + L + +
Sbjct: 484 YVV------EEDKN--SYLLDYLSGL-----KSD-GLCLIFVETKRSCDTLTYFLNQRNF 529
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
T + H L Q R ++ F RS A FLV TD ASRG+ V+ V+ FD
Sbjct: 530 PTTCI-----HGDLTQPERENALQSF---RSF-ATPFLVATDIASRGLHIGNVNLVINFD 580
Query: 615 FPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
P D Y A F K + +++ + + D+P FE M
Sbjct: 581 LPTDIHIYVHRIGRTGRAGKKGL-AISFFNEKNKPVGAELLKLMKASN--QDIPDWFEKM 637
>UNIPROTKB|E2RFA3 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY GeneTree:ENSGT00680000100037
CTD:8886 EMBL:AAEX03011884 RefSeq:XP_533327.3
Ensembl:ENSCAFT00000007958 GeneID:476120 KEGG:cfa:476120
Uniprot:E2RFA3
Length = 669
Score = 242 (90.2 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 77/302 (25%), Positives = 148/302 (49%)
Query: 169 MGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDY--NSRSNKHEK 226
+ KKTV ++ + K+T + E ++ + K + D +++ +K E
Sbjct: 73 VAKKTVETVQIRKKKKKSTIIVNGEAETQPPNSESKKKKKRKRKMVDDAGPDTKKSKTED 132
Query: 227 SGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSAD-G--DFFSRKSFKELGC--SDYMIE 281
G + G ++ N +P D + S G F SF L ++ ++
Sbjct: 133 KGDS-EEGTQAPEETENNGEKPDDEEEDSEVPSLPLGLTGAFEDTSFASLSSLVNENTLK 191
Query: 282 SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341
++K F ++IQ + P++EG+ + A ++GSGKTLA+L+P ++ + +L+ + ++
Sbjct: 192 AIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--VKLKFMPRN 249
Query: 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLI 401
+G V+IL+PT ELA Q + L V +++ GG + + + L G+++++
Sbjct: 250 GTG---VLILSPTRELAMQTFGVLKELMMYHVHTYGLIM-GGSNRSAEAQKLGNGINIIV 305
Query: 402 ATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
ATPGR + ++ G + NL+C ++DE D + D FE L+ +I P Q + +
Sbjct: 306 ATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEEELKQIIKLLPTRRQTMLFS 363
Query: 460 AT 461
AT
Sbjct: 364 AT 365
Score = 106 (42.4 bits), Expect = 3.3e-23, Sum P(2) = 3.3e-23
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + VL H Q R +
Sbjct: 415 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYID-----LPVLAIHGRQKQNKRTTTFFQ 469
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 470 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 508
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 238 (88.8 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 60/201 (29%), Positives = 113/201 (56%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ +++++ F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 166 FEDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 225
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+PVI+ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 226 LIPVIELI--VKLKFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 279
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + +++ L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 280 GSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 337
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 338 ELKQIIKLLPARRQTMLFSAT 358
Score = 110 (43.8 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + ++ + +L D + VL H Q R +
Sbjct: 408 LFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYID-----LPVLAIHGKQKQNKRTTTFFQ 462
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 463 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 501
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 233 (87.1 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 92/381 (24%), Positives = 176/381 (46%)
Query: 178 KQEGRLSKTTPSLENFRELGEHIVDNDVP-AESIDKNISDYNSRSNKHEKSGTKIDRGWR 236
K E + K E +E + + ND AE + ++ DY + E+ D+
Sbjct: 3 KSELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDY-----EQEEENEDADQNTS 57
Query: 237 SGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQA 296
L E D Q+ + F +L S+ + +++K F ++IQ
Sbjct: 58 VESESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQK 117
Query: 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356
+ PP++ G+ + A ++GSGKTLA+L+P I+ L + K +G+ V+I++PT E
Sbjct: 118 RSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKF----KPRNGTG-VIIISPTRE 172
Query: 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EG 414
LA Q+ + L K +V+ GG ++ + + L +GV++L+ATPGR + ++ +G
Sbjct: 173 LALQIFGVAKELLKYHHQTFGIVI-GGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKG 231
Query: 415 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEIYNKLVEV 473
+ NLR ++DE D + + FE ++ ++ P Q L +AT ++ + L +
Sbjct: 232 FV-FRNLRSLVIDEADRIL-EIGFEDEMRQIMKILPSENRQTLLFSATQTTKVED-LARI 288
Query: 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL-QLIEKSPVSKT 532
+ GP + G V+ G ++ ++ +K+ LL ++++ K
Sbjct: 289 ----SLKPGPLYVNVDSGKPTSTVE--GLEQGYVVVDS---DKRFLLLFSFLKRNLKKKV 339
Query: 533 IVFCNKIVTCRKVENILKRFD 553
IVF + + + + +L D
Sbjct: 340 IVFMSSCASVKYMAELLNYID 360
Score = 113 (44.8 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 31/129 (24%), Positives = 55/129 (42%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++++ K IVF + + + + +L D + VL H Q+ R E
Sbjct: 327 LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYID-----LPVLDLHGKQKQQRRTNTFFE 381
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKA 639
F + L+CT+ A+RG+D VD +V +D P DP +Y K+
Sbjct: 382 FCNAEKG----ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKS 437
Query: 640 FIFVVGKQV 648
+F+ ++
Sbjct: 438 LMFLAPSEL 446
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 238 (88.8 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 60/201 (29%), Positives = 113/201 (56%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ +++++ F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 178 FEDTSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 237
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+PVI+ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 238 LIPVIELI--VKLKFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 291
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + +++ L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 292 GSNRSAEVQKLLNGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 349
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 350 ELKQIIKLLPARRQTMLFSAT 370
Score = 110 (43.8 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + ++ + +L D + VL H Q R +
Sbjct: 420 LFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYID-----LPVLAIHGKQKQNKRTTTFFQ 474
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 475 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 513
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 235 (87.8 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 64/217 (29%), Positives = 105/217 (48%)
Query: 252 PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
PK + D F+E ++ + + + RPS IQ A P + GK +
Sbjct: 42 PKDNRFKTTDVTDTRGNEFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLAR 101
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++G+GKT AY +PV++++ T + +++ PT ELA Q C L+K
Sbjct: 102 AKNGTGKTGAYCIPVLEQI---------DPTKDYIQALVMVPTRELALQTSQICIELAK- 151
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
+ R MV TGG K + + + V ++IATPGR + L+ + + + + R +LDE D
Sbjct: 152 HLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADK 211
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468
L + DF+ L +I P Q L +AT P+ + N
Sbjct: 212 LLS-LDFQGMLDHVILKLPKDPQILLFSATFPLTVKN 247
Score = 105 (42.0 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L K ++++I+FCN + ++VE + K+ E HA + Q R
Sbjct: 282 KVHCLNTLFSKLQINQSIIFCN---STQRVELLAKKIT--ELGYCCYYIHAKMAQAHRNR 336
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+F + LVC+D +RGID V+ V+ FDFPR Y
Sbjct: 337 VFHDFRQGLCRN----LVCSDLFTRGIDVQAVNVVINFDFPRMAETY 379
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 248 (92.4 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 81/294 (27%), Positives = 143/294 (48%)
Query: 245 QYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE 304
+Y+P D + + DG F +F EL S ++ + + + +P+ IQA P +
Sbjct: 144 EYKPEDATPKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALT 203
Query: 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364
G+ + +GSGKT A+ LP ++RL + + RV+IL PT ELA Q+ S
Sbjct: 204 GRDLCASAITGSGKTAAFALPTLERLLFRPKRVFAT------RVLILTPTRELAVQIHSM 257
Query: 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRC 423
++L++ + ++ GG + Q L+ D+++ATPGR + ++ + + L +L
Sbjct: 258 IQNLAQF-TDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAV 316
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVM 481
ILDE D L F + L+ P Q + +AT+ E+ +LV++ + ++
Sbjct: 317 LILDEADRLLQT-GFATEITELVRLCPKRRQTMLFSATMTEEV-KELVKLSLNKPLRLSA 374
Query: 482 GPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF 535
P R PGL E +V +E+ N+++ LL L ++ SK I+F
Sbjct: 375 DPSARR-PPGLTEEVVRIRRTREA---------NQEAVLLSLCTRTFKSKVIIF 418
Score = 101 (40.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 36/120 (30%), Positives = 58/120 (48%)
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+E + T N+++ LL L ++ SK I+F +++ IL F + L
Sbjct: 386 EEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLK-IL--FGLAGLKAAEL 442
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H L Q RL +++ F R +E FL+ TD A+RG+D GV V+ + PR+ Y
Sbjct: 443 --HGNLTQAQRLDSLELF---RKQEVD-FLIATDVAARGLDIIGVQTVINYACPREIDSY 496
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 211 (79.3 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 66/223 (29%), Positives = 115/223 (51%)
Query: 247 EPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
EP D P + + +A+ + K+FK+LG +D + E+ + + +P++IQ A P ++G+
Sbjct: 6 EP-DSPTEALQTAAEEE--ETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR 62
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
I ++GSGKT A+ LP++ L E Q L ++L PT ELA Q+
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALL-ETPQRLF--------ALVLTPTRELAFQISEQFE 113
Query: 367 SL-SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRC 423
+L S GV + V+ GG +Q L + ++IATPGR + ++ +G L L+
Sbjct: 114 ALGSSIGV--QCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGF-NLRALKY 170
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
++DE D + N DFE + ++ P + +AT+ ++
Sbjct: 171 LVMDEADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKV 212
Score = 131 (51.2 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L+ ++ + + ++FC+ TC + + +P H + Q RL
Sbjct: 250 KDTYLVYILNELAGNSFMIFCS---TCNNTQRTALLL--RNLGFTAIPLHGQMSQSKRLG 304
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
++ +F ++K AR L+ TD ASRG+D VD VV FD P +Y
Sbjct: 305 SLNKF---KAK-ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 360
Query: 636 XXKAFIFVVGKQVSLAQRI 654
KA FV V L QRI
Sbjct: 361 G-KAITFVTQYDVELFQRI 378
>UNIPROTKB|A2VD92 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8355
"Xenopus laevis" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177
EMBL:BC129617 RefSeq:NP_001091352.1 UniGene:Xl.75260
ProteinModelPortal:A2VD92 IntAct:A2VD92 PRIDE:A2VD92
GeneID:100037192 KEGG:xla:100037192 Xenbase:XB-GENE-969102
Uniprot:A2VD92
Length = 740
Score = 170 (64.9 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
Identities = 48/141 (34%), Positives = 70/141 (49%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+KS +P+ +I+ P+ ELA Q L+N + K R +++ GG K QL L+ G
Sbjct: 280 TKSLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI---SSSPV 451
VD+++ TPGR LI G L L +R +LDE D L + DF + I +S
Sbjct: 340 VDIVVGTPGRIDDLISTGKLSLSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQITSDGK 399
Query: 452 TAQYLFVTATLPVEIYNKLVE 472
Q + +ATL KL E
Sbjct: 400 RLQVIVCSATLHSFDVKKLSE 420
Score = 114 (45.2 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G V
Sbjct: 63 -IVYETLKDQQEGKKGKASV 81
Score = 112 (44.5 bits), Expect = 5.5e-23, Sum P(3) = 5.5e-23
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF----DRKE 556
G ++ E + K +++ I++ + + I+FC + C +E + D+K
Sbjct: 478 GGNSAEVWSEAIKVLKGEYIVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKG 537
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ + H+ R N++ F + E R FL+CTD A+RGID GV +V+ P
Sbjct: 538 HQFSCVCLHSDRKPPERKHNLERF---KKCEVR-FLICTDVAARGIDIRGVPYVINVTLP 593
Query: 617 RDPSEY 622
+ Y
Sbjct: 594 DEKQNY 599
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 297 (109.6 bits), Expect = 5.6e-23, P = 5.6e-23
Identities = 86/321 (26%), Positives = 163/321 (50%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E D + +++ + +++ + IQ + P +V G+ + Q+GSGKT A+LLP++
Sbjct: 287 TFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILA 346
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ + T P +I+APT EL +Q+ + R S G R +V+ GG +
Sbjct: 347 HLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSY-GTCVRPVVIYGGTQMFH 405
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ + EG ++L ATPGR + +I++ + L LR +LDE D + D F +++L+ S
Sbjct: 406 SLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRML-DMGFREDIENLLKS 464
Query: 449 SPVTA----QYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
S + + Q L +AT P I + E+ PD V+ + +E+ ++
Sbjct: 465 SGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVI------ 518
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D+ KK L++++++ +T+VF V +K + + F +E +V
Sbjct: 519 EVDE------FGKKDKLMEILQEIGSERTMVF----VKTKKKADFIATFLCQE-KVPSTS 567
Query: 564 FHAALDQETRLANMKEFTTSR 584
H +Q+ R +++F T +
Sbjct: 568 IHGDREQKERETALRDFRTGQ 588
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 242 (90.2 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 66/208 (31%), Positives = 119/208 (57%)
Query: 268 KSFKEL-GC-SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+SF L G S+ + ++K F ++IQ+ + P+++G+ + A Q+GSGKTLA+L+P
Sbjct: 185 RSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIP 244
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + + L+ + ++ +G V+I++PT EL+ Q + L +V+ GG
Sbjct: 245 AVELINK--LRFMPRNGTG---VIIISPTRELSMQTFGVLKELMAHHHHTYGLVM-GGSN 298
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI-NLRCAILDEVDILFNDEDFEVALQS 444
++ + E L +G+++L+ATPGR + ++ L NL+C I+DEVD + + FE L+
Sbjct: 299 RQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRIL-EIGFEEELKQ 357
Query: 445 LISSSPVTAQ-YLF-VTATLPVEIYNKL 470
+I+ P Q LF T T +E +KL
Sbjct: 358 IINLLPKRRQTMLFSATQTARIEALSKL 385
Score = 104 (41.7 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 29/103 (28%), Positives = 46/103 (44%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + ++ + + D T + H Q R +
Sbjct: 424 LFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSI-----HGKQKQTKRTTTFFQ 478
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 479 FCNAESG----ILLCTDVAARGLDIPQVDWIVQYDPPDDPREY 517
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 246 (91.7 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 64/203 (31%), Positives = 104/203 (51%)
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
D++I ++ + P+ +Q + P V+ G+ + Q+GSGKT +L P++ + Q
Sbjct: 195 DHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPA 254
Query: 337 GLSKSTSGS--------PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGFRQK 387
S +G P +ILAPT EL SQ+ R + + V R VV GG
Sbjct: 255 APPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWV--RPCVVYGGADIG 312
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL ++ G D+L+ATPGR + LI+ G + L+N++ ILDE D + D FE ++ ++
Sbjct: 313 SQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRML-DMGFEPQIRRIVE 371
Query: 448 SSPVT----AQYLFVTATLPVEI 466
+ Q L +AT P +I
Sbjct: 372 GEDMPNVNDRQTLMFSATFPRDI 394
Score = 90 (36.7 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 36/159 (22%), Positives = 64/159 (40%)
Query: 515 NKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
+K+S LL ++ T++F V +++ + L F + R H Q R
Sbjct: 431 DKRSVLLDILHTHGTTGLTLIF----VETKRMADALSEFLINQ-RFPATAIHGDRTQRER 485
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXX 633
++ F + R LV T A+RG+D V HV+ +D P D +Y
Sbjct: 486 ERALEMFRSGRYP----ILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG 541
Query: 634 XXXXKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
F G + + + +++ ++ H +VPS E
Sbjct: 542 NTGIATAFFNRGNR-GVVRDLIDLLKEAH--QEVPSFLE 577
Score = 51 (23.0 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 29 NSNTDKLMNKCVLPLLNPNPVGRPG 53
N+N+ + PL NPN G PG
Sbjct: 90 NTNSGWTATEAGRPLFNPNAYGNPG 114
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 253 (94.1 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 61/194 (31%), Positives = 105/194 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +L+P+ +R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K ++ ++ GG + + Q
Sbjct: 158 LKTHSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLKTALILGGDKMEDQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++IATPGR + + E L+L ++ + DE D LF + F LQ +I
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEIIGRL 268
Query: 450 PVTAQYLFVTATLP 463
P Q + +ATLP
Sbjct: 269 PGGHQTVLFSATLP 282
Score = 96 (38.9 bits), Expect = 5.8e-23, Sum P(2) = 5.8e-23
Identities = 37/134 (27%), Positives = 62/134 (46%)
Query: 491 GLEE-FLVDCSGDQESDKTPETAFL-----NKKSALLQLIEK--SPVSKTIVFCNKIVTC 542
GL E L+ D + ++ +T+F K + LL L+ P +T+VF + T
Sbjct: 292 GLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKAAVLLHLLRNVVRPQDQTVVF---VATK 348
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
E + + + V ++ALDQ R N+ FT + L+ TD A+RG+
Sbjct: 349 HHAEYLSELLATQG--VSCAHIYSALDQTARKINLARFTHGKCSA----LIVTDLAARGL 402
Query: 603 DFAGVDHVVLFDFP 616
D +D+V+ + FP
Sbjct: 403 DIPLLDNVINYSFP 416
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 230 (86.0 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 72/250 (28%), Positives = 121/250 (48%)
Query: 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347
F +PS IQ P + G+ + ++G+GKT A+++P ++R+ KST +
Sbjct: 59 FEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINP-------KSTK--TQ 109
Query: 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
+IL PT ELA Q C++L K + MV TGG + L + V +L+ TPGR
Sbjct: 110 ALILVPTRELALQTSHVCKTLGK-HLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRV 168
Query: 408 MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467
+ L +G+ L ++DE D L + E F ++ L+S P Q + +AT P+
Sbjct: 169 LDLASKGVADLSECPTFVMDEADKLLSPE-FTPVIEQLLSFHPKDRQVMLFSATFPM--- 224
Query: 468 NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS 527
+V+ F D + + P + I+ ++E + G + E K L L K
Sbjct: 225 --IVKSFKD-RHMRNP--YEINL-MDELTL--RGITQYYAFVEEK--QKVHCLNTLFSKL 274
Query: 528 PVSKTIVFCN 537
++++I+FCN
Sbjct: 275 QINQSIIFCN 284
Score = 111 (44.1 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 34/114 (29%), Positives = 55/114 (48%)
Query: 512 AFLNKKS---ALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AF+ +K L L K ++++I+FCN + +VE + K+ E HA +
Sbjct: 256 AFVEEKQKVHCLNTLFSKLQINQSIIFCN---STNRVELLAKKIT--ELGYSCFYSHARM 310
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ R +F + LVC+D +RGID V+ V+ FDFP++ Y
Sbjct: 311 LQQHRNRVFHDFRNGVCRN----LVCSDLLTRGIDIQAVNVVINFDFPKNAETY 360
>WB|WBGene00001601 [details] [associations]
symbol:glh-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0008432 "JUN kinase binding" evidence=IPI]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0042127 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0007276
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:AF079508 EMBL:FO081191 PIR:T32759 PIR:T43326
RefSeq:NP_491207.3 ProteinModelPortal:O76743 SMR:O76743
IntAct:O76743 STRING:O76743 PaxDb:O76743 PRIDE:O76743
EnsemblMetazoa:T12F5.3.1 EnsemblMetazoa:T12F5.3.2 GeneID:171941
KEGG:cel:CELE_T12F5.3 UCSC:T12F5.3.1 CTD:171941 WormBase:T12F5.3
InParanoid:O76743 NextBio:873335 Uniprot:O76743
Length = 1156
Score = 300 (110.7 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 91/367 (24%), Positives = 178/367 (48%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D S FK L D + ++LKR RP+ IQ +F P++ G + +GSGKTLA+
Sbjct: 733 DMASFDGFKILP-QD-LHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAF 790
Query: 323 LLPVIQRLRQE-ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-----KCGVPFR 376
L+P + +L +E E SPR++I+APT EL +Q + R L+ KCG+ F
Sbjct: 791 LIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAF- 849
Query: 377 SMVVTGGFRQKTQLENLQE--GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434
GG+ + +++L+ +++L+AT GR + G + L ++ +LDE D + +
Sbjct: 850 -----GGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVD 904
Query: 435 DEDFEVALQSLISS-SPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPG 491
DF + +I S T Q + +A+ ++ + + F ++ +
Sbjct: 905 SNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANEK 964
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK--TIVFCNKIVTCRKVENIL 549
+++ ++ ++ D + +++ + + L+ +P+ K T++F N + C + ++
Sbjct: 965 IDQKILPVPRTEKRDAIYKLLGIDENT--VTLLPDAPIEKQKTLIFVNSVKFCDTLAALI 1022
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
V + H+ +QE R + +F + + +V ++ +RG++ AG+DH
Sbjct: 1023 S-----SAGVSTISMHSYQNQEQRDRTLDDFRRGKYQ----CMVASNVCARGLNIAGLDH 1073
Query: 610 VVLFDFP 616
VV +D P
Sbjct: 1074 VVNYDMP 1080
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 256 (95.2 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 71/244 (29%), Positives = 124/244 (50%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
+ + D + +L + ESL+++ IQ P ++G+ I ++G+GK
Sbjct: 93 NVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGK 152
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
TLA+ +P+I+RL +E + SG P+ ++LAPT ELA QV + P+ S
Sbjct: 153 TLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE----SAPYLS 208
Query: 378 MV-VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
V V GG Q L GVDV++ TPGR + LI+ L+L + +LDE D +
Sbjct: 209 TVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLA-V 267
Query: 437 DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV---VMGPGMHRISPGLE 493
FE A++S++ + P Q + +AT+P + KL + D + ++G +++ G++
Sbjct: 268 GFEEAVESILENLPTKRQSMLFSATMPTWV-KKLARKYLDNPLNIDLVGDQDEKLAEGIK 326
Query: 494 EFLV 497
+ +
Sbjct: 327 LYAI 330
Score = 90 (36.7 bits), Expect = 6.5e-23, Sum P(2) = 6.5e-23
Identities = 37/135 (27%), Positives = 55/135 (40%)
Query: 497 VDCSGDQESDKTPE--------TAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVEN 547
+D GDQ+ +K E T +K++ L LI + KTIVF T R +
Sbjct: 311 IDLVGDQD-EKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQ---TKRDADE 366
Query: 548 ILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607
+ + H + Q R + F + LV TD ASRG+D V
Sbjct: 367 VSLALSNS---IATEALHGDISQHQRERTLNAFRQGKFT----VLVATDVASRGLDIPNV 419
Query: 608 DHVVLFDFPRDPSEY 622
D V+ ++ P DP +
Sbjct: 420 DLVIHYELPNDPETF 434
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 298 (110.0 bits), Expect = 7.2e-23, P = 7.2e-23
Identities = 104/376 (27%), Positives = 175/376 (46%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G + +++++ R+ F P+ IQ P ++E + + ++GSGKT A+++P+I++
Sbjct: 93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ S ST R +IL+P+ ELA Q L + L K G +S+++ GG + Q
Sbjct: 153 LK-------SHSTKFGARGLILSPSRELALQTLKVVKELGK-GTDLKSVLLVGGDSLEEQ 204
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ D++IATPGRF+ L E L L +++ + DE D LF + F L ++
Sbjct: 205 FGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLF-EMGFAAQLTEILHGL 263
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE-FLVDCSGDQES--- 505
P T Q L +ATLP + D +V +ISP L+ F S ++E
Sbjct: 264 PSTRQTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALL 323
Query: 506 ---------------------DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
+K PE + NKK ++ + ++ + IV
Sbjct: 324 YILNEVIKMPTGPTEASLRLKEKGPEDS-KNKKRKRAEMERAVNMKESPTKHSTIVFAAT 382
Query: 545 VENILKRFDR-KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGID 603
++ + +E V + +LDQ R ++ F T S LV TD A+RGID
Sbjct: 383 KHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISN----ILVVTDVAARGID 438
Query: 604 FAGVDHVVLFDFPRDP 619
+ +V+ +DFP P
Sbjct: 439 IPILANVINYDFPSQP 454
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 210 (79.0 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
Identities = 62/202 (30%), Positives = 106/202 (52%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+LG +D + E+ + + +P++IQ A P ++G+ I ++GSGKT A+ LP++
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQ 386
L E Q L ++L PT ELA Q+ +L S GV +S V+ GG
Sbjct: 110 NALL-ETPQRLF--------ALVLTPTRELAFQISEQFEALGSSIGV--QSAVIVGGIDS 158
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+Q L + ++IATPGR + ++ +G L L+ ++DE D + N DFE +
Sbjct: 159 MSQSLALAKKPHIVIATPGRLIDHLENTKGF-NLRALKYLVMDEADRILN-MDFETEVDK 216
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
++ P + +AT+ ++
Sbjct: 217 ILKVIPRDRKTFLFSATMTKKV 238
Score = 131 (51.2 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L+ ++ + + ++FC+ TC + + +P H + Q RL
Sbjct: 276 KDTYLVYILNELAGNSFMIFCS---TCNNTQRTALLL--RNLGFTAIPLHGQMSQSKRLG 330
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
++ +F ++K AR L+ TD ASRG+D VD VV FD P +Y
Sbjct: 331 SLNKF---KAK-ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 386
Query: 636 XXKAFIFVVGKQVSLAQRI 654
KA FV V L QRI
Sbjct: 387 G-KAITFVTQYDVELFQRI 404
Score = 43 (20.2 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 483 PGMHRISPGLEEFLVDCSGDQESDKTPE 510
P M R + L E VD + +E D E
Sbjct: 11 PSMPRAADALPESAVDMAAPEEHDSPAE 38
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 291 (107.5 bits), Expect = 8.2e-23, P = 8.2e-23
Identities = 81/284 (28%), Positives = 146/284 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF+++G DY++E +K+ F P+ IQ+ +P ++G+ I ++GSGKTL+YLLP I
Sbjct: 99 KSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + + P V++LAPT ELA Q+ ++ + GG +
Sbjct: 159 VHVNAQPML----AHGDGPIVLVLAPTRELAVQIQQEASKFGSSS-KIKTTCIYGGVPKG 213
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +LQ+GV+++IATPGR + +++ L + +LDE D + D F+ ++ ++S
Sbjct: 214 PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRML-DMGFDPQIRKIVS 272
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVE-VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q L+ +AT P E+ + ++ KV++G + + + + +VD ES
Sbjct: 273 HIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQ-IVDVIS--ESQ 329
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK 550
K NK LL+ I S+ +VF + C ++ L+
Sbjct: 330 K------YNKLVKLLEDIMDG--SRILVFLDTKKGCDQITRQLR 365
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 254 (94.5 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 73/272 (26%), Positives = 127/272 (46%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L + ++++L + +P+ IQ A P ++ + + Q+G+GKT A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + S + + R ++L PT ELA QV + +K G R + GG +
Sbjct: 62 LLMADNQ---SDHAAKAIRALVLVPTRELALQVQQSFVKYAK-GTDIRVGIAYGGVSIEA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q G+DVLIATPGR + +++G L L L + DE D + D F +Q+++
Sbjct: 118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRML-DMGFMDEIQAVLKQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +ATL I++ + D K + + + +E+ + D++++
Sbjct: 177 VPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFV 236
Query: 509 PETA-FLNKKSALLQLIEKSPVSKTIVFCNKI 539
N + L+ K V K NK+
Sbjct: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL 268
Score = 76 (31.8 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
FH L Q R ++EF + LV TD A+RG+D A + +V+ F+ P +Y
Sbjct: 275 FHGDLSQGAREKVLQEFKQGLVQ----VLVATDVAARGLDIAELQYVINFELPFIAEDY 329
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 254 (94.5 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 73/272 (26%), Positives = 127/272 (46%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L + ++++L + +P+ IQ A P ++ + + Q+G+GKT A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + S + + R ++L PT ELA QV + +K G R + GG +
Sbjct: 62 LLMADNQ---SDHAAKAIRALVLVPTRELALQVQQSFVKYAK-GTDIRVGIAYGGVSIEA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q G+DVLIATPGR + +++G L L L + DE D + D F +Q+++
Sbjct: 118 QQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRML-DMGFMDEIQAVLKQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +ATL I++ + D K + + + +E+ + D++++
Sbjct: 177 VPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFV 236
Query: 509 PETA-FLNKKSALLQLIEKSPVSKTIVFCNKI 539
N + L+ K V K NK+
Sbjct: 237 SHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL 268
Score = 76 (31.8 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
FH L Q R ++EF + LV TD A+RG+D A + +V+ F+ P +Y
Sbjct: 275 FHGDLSQGAREKVLQEFKQGLVQ----VLVATDVAARGLDIAELQYVINFELPFIAEDY 329
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 290 (107.1 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 102/369 (27%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 240 SQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 298
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 299 VVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 357
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR--------- 407
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
V + + + K ++K+S LL L+ + S T+VF V +K + L+ F
Sbjct: 408 --VGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 461
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 462 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 516
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 517 DLPSDIEEY 525
Score = 50 (22.7 bits), Expect = 8.9e-23, Sum P(2) = 8.9e-23
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 161 AVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVP--AESIDKNI-SDY 217
A +D S+ +T + +GR P L N RE + D D + S DK+ S +
Sbjct: 17 AGLDLNSS-DNQTGGSTASKGRY--IPPHLRN-REATKGFYDKDSSGWSSSKDKDAYSSF 72
Query: 218 NSRSNKHEKSGTKIDRGWRSGG 239
SR + KS DRG S G
Sbjct: 73 GSRGDSRGKSSFFGDRGSGSRG 94
>UNIPROTKB|Q5XH91 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003712 "transcription cofactor activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033677 "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GeneTree:ENSGT00660000095174
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HSSP:P10081 HOGENOM:HOG000251633 EMBL:CR855610
EMBL:BC084181 RefSeq:NP_001011133.1 UniGene:Str.3470
ProteinModelPortal:Q5XH91 STRING:Q5XH91 PRIDE:Q5XH91
Ensembl:ENSXETT00000038646 GeneID:496549 KEGG:xtr:496549
Xenbase:XB-GENE-969096 InParanoid:Q5XH91 Bgee:Q5XH91 Uniprot:Q5XH91
Length = 740
Score = 169 (64.5 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 48/141 (34%), Positives = 71/141 (50%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVP-FRSMVVTGGFRQKTQLENLQEG 396
+K+ +P+ +I+ P+ ELA Q L+N + K P R +++ GG K QL L+ G
Sbjct: 280 AKNLPNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI---SSSPV 451
VD+++ TPGR LI G L L +R +LDE D L + DF + I +S
Sbjct: 340 VDIVVGTPGRIDDLISTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQVTSDGK 399
Query: 452 TAQYLFVTATLPVEIYNKLVE 472
Q + +ATL KL E
Sbjct: 400 RLQVIVCSATLHSFDVKKLSE 420
Score = 113 (44.8 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 25/80 (31%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G V
Sbjct: 63 -IVYETLKDQQEGKKGKTSV 81
Score = 112 (44.5 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF----DRKE 556
G ++ E + K ++ I++ + + I+FC + C +E + D+K
Sbjct: 478 GGNSAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKLDCDNMEQYFIQQGGGPDKKG 537
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ + H+ + R N++ F + E R FL+CTD A+RGID GV +V+ P
Sbjct: 538 HQFSCVCLHSDRKPQERKHNLERF---KKCEVR-FLICTDVAARGIDIHGVPYVINVTLP 593
Query: 617 RDPSEY 622
+ Y
Sbjct: 594 DEKQNY 599
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 209 (78.6 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 62/202 (30%), Positives = 104/202 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SFK+LG +D + E+ + + P++IQ A P ++G+ I ++GSGKT A+ LP++
Sbjct: 25 RSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPIL 84
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQ 386
Q L Q L ++L PT ELA Q+ +L S GV S V+ GG
Sbjct: 85 QALLDAP-QRLF--------ALVLTPTRELAFQISEQFEALGSSIGV--HSAVIVGGIDS 133
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+Q L + ++IATPGR + ++ +G L L+ ++DE D + N DFE +
Sbjct: 134 MSQSLALAKKPHIIIATPGRLVDHLENTKGF-NLRALKFLVMDEADRILN-MDFETEVDK 191
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
++ P + +AT+ ++
Sbjct: 192 ILKVIPRDRKTFLFSATMTKQV 213
Score = 130 (50.8 bits), Expect = 9.5e-23, Sum P(2) = 9.5e-23
Identities = 39/139 (28%), Positives = 61/139 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K S L+ ++ + + ++FC+ TC + + +P H + Q RL
Sbjct: 251 KDSYLVYILNELAGNSFMIFCS---TCNNTQRTALLL--RNLGFTAIPLHGQMSQNKRLG 305
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
++ +F ++K AR L+ TD ASRG+D VD V+ FD P +Y
Sbjct: 306 SLNKF---KAK-ARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRS 361
Query: 636 XXKAFIFVVGKQVSLAQRI 654
K+ FV V L QRI
Sbjct: 362 G-KSITFVTQYDVELFQRI 379
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 208 (78.3 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 66/223 (29%), Positives = 114/223 (51%)
Query: 247 EPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
EP D P + +A+ + K+FK+LG +D + E+ + + +P++IQ A P ++G+
Sbjct: 6 EP-DSPSGALQTAAEEE--ETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR 62
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
I ++GSGKT A+ LP++ L E Q L ++L PT ELA Q+
Sbjct: 63 DIIGLAETGSGKTGAFALPILNALL-ETPQRLF--------ALVLTPTRELAFQISEQFE 113
Query: 367 SL-SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRC 423
+L S GV + V+ GG +Q L + ++IATPGR + ++ +G L L+
Sbjct: 114 ALGSSIGV--QCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGF-NLRALKY 170
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
++DE D + N DFE + ++ P + +AT+ ++
Sbjct: 171 LVMDEADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKV 212
Score = 131 (51.2 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L+ ++ + + ++FC+ TC + + +P H + Q RL
Sbjct: 250 KDTYLVYILNELAGNSFMIFCS---TCNNTQRTALLL--RNLGFTAIPLHGQMSQSKRLG 304
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
++ +F ++K AR L+ TD ASRG+D VD VV FD P +Y
Sbjct: 305 SLNKF---KAK-ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 360
Query: 636 XXKAFIFVVGKQVSLAQRI 654
KA FV V L QRI
Sbjct: 361 G-KAITFVTQYDVELFQRI 378
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 243 (90.6 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 57/202 (28%), Positives = 106/202 (52%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + ++ R +++ + +Q + P ++ G+ + Q+GSGKT A+LLP++
Sbjct: 275 TFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILS 334
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ E + P +I+APT EL +Q+ + R S G R +VV GG +
Sbjct: 335 YMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSY-GTCVRPVVVYGGIQPVH 393
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
+ ++++G ++L ATPGR + ++ + + L LR +LDE D + D F ++ L++
Sbjct: 394 AMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRML-DMGFAPEIEKLMTK 452
Query: 449 SPVTA----QYLFVTATLPVEI 466
+ Q L +AT P EI
Sbjct: 453 PGMPTKEKRQTLMFSATYPEEI 474
Score = 106 (42.4 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 29/107 (27%), Positives = 53/107 (49%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K LL++++ S +T++F N T +K + I ++ + H +Q R +
Sbjct: 513 KMEKLLEILKSSEKERTMIFVN---TKKKADFIAGYLCQE--KFSSTSIHGDREQYQRES 567
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F T + +VCT A+RG+D V HV+ +D P++ EY
Sbjct: 568 ALWDFRTGKCT----VIVCTAVAARGLDIENVQHVINYDVPKEVDEY 610
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 192 NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDR 233
NF L DN + D N +Y+S + + G + +R
Sbjct: 19 NFSTLETENTDNYSAYSNNDINNQNYDSERSFGNRGGYRSER 60
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 249 (92.7 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 61/196 (31%), Positives = 101/196 (51%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S +++E ++ +P+ +Q P ++EG+ C+ ++GSGKT A++LP++Q+
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E+ G+ ++L PT ELA Q+ R L K + + ++ GG Q
Sbjct: 64 L-SEDPYGIF--------CLVLTPTRELAYQIAEQFRVLGK-PLGLKDCIIVGGMDMVAQ 113
Query: 390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLI 446
L V+IATPGR L + +R ++DE D L DF V L++++
Sbjct: 114 ALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAIL 173
Query: 447 SSSPVTAQYLFVTATL 462
++ P Q L +ATL
Sbjct: 174 AAVPARRQTLLFSATL 189
Score = 87 (35.7 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 32/128 (25%), Positives = 55/128 (42%)
Query: 533 IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFL 592
I+F N TC+ + +L++F+ + H+ + Q+ R A + +F +S + L
Sbjct: 252 IIFTNTCKTCQILCMMLRKFN-----FPTVALHSMMKQKERFAALAKFKSSIYR----IL 302
Query: 593 VCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQVSLAQ 652
+ TD ASRG+D V V+ + P P Y +A V + L
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQG-QAITLVTQYDIHLVH 361
Query: 653 RIMERNRK 660
I E+ +K
Sbjct: 362 AIEEQIKK 369
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 293 (108.2 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 102/370 (27%), Positives = 173/370 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 156 ESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 215
Query: 328 QRLRQE---ELQGLSKSTSGS-------PRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
++ + + K+T+G P ++LAPT ELA Q+ R + R
Sbjct: 216 SQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRS-RVRP 274
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D
Sbjct: 275 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMG 333
Query: 438 FEVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
FE ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 334 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR-------- 384
Query: 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRF 552
V + + + K L+K+S LL L+ + S T+VF V +K + L+ F
Sbjct: 385 ---VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVF----VETKKGADALEDF 437
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
E H Q R + +F + +S LV T A+RG+D + V HV+
Sbjct: 438 LYHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVIN 492
Query: 613 FDFPRDPSEY 622
FD P D EY
Sbjct: 493 FDLPSDIEEY 502
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 290 (107.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 102/369 (27%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 180 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 239
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 240 SQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 298
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 299 VVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 357
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR--------- 407
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
V + + + K ++K+S LL L+ + S T+VF V +K + L+ F
Sbjct: 408 --VGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 461
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 462 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 516
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 517 DLPSDIEEY 525
Score = 49 (22.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 188 PSLENFRELGEHIVDNDVP--AESIDKNI-SDYNSRSNKHEKSGTKIDRGWRSGG 239
P L N RE + D D + S DK+ S + SR + KS DRG S G
Sbjct: 41 PHLRN-REATKGFYDKDSSGWSSSKDKDAYSSFGSRGDSRGKSSFFGDRGSGSRG 94
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 235 (87.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 62/201 (30%), Positives = 110/201 (54%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F +SF L S+ ++ +K F ++IQ P++EG+ + A ++GSGKTLA+
Sbjct: 156 FEDRSFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAF 215
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P I+ + + L+ + ++ +G V++L+PT ELA Q + L V +++ G
Sbjct: 216 LIPSIELIYK--LKFMPRNGTG---VIVLSPTRELAMQTYGVLKELMTHHVHTYGLIM-G 269
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + + + L GV++L+ATPGR + ++ G + NL+C I+DE D + + FE
Sbjct: 270 GSNRSAEAQKLANGVNILVATPGRLLDHLQNTPGFM-FKNLQCLIIDEADRIL-EVGFEE 327
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 328 ELKQIIKLLPKKRQSMLFSAT 348
Score = 108 (43.1 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + ++ + +L D + V+ H Q R +
Sbjct: 398 LFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYID-----LPVMAIHGKQKQTKRTTTFFQ 452
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V FD P DP EY
Sbjct: 453 FCNADSG----ILLCTDVAARGLDIPEVDWIVQFDPPDDPKEY 491
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 304 (112.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 106/372 (28%), Positives = 175/372 (47%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ ++E S+ +++++K+ + +P+ IQ A P +E + I ++GSGKT A++LP++
Sbjct: 698 RKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPML 757
Query: 328 QRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFR 385
++Q L L+ TS P +++AP+ ELA Q+ S C R++ V GG
Sbjct: 758 SYVKQ--LPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSC--RTVAVVGGRN 813
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q L+ GV+++I TPGR +++ L ILDE D + D FE + +
Sbjct: 814 AEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMM-DMGFEDTVHYI 872
Query: 446 ISSSPVTA-----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+ P + L + + + ++L + M P + R+S S
Sbjct: 873 LDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYIS 932
Query: 501 -GDQESDKTP---ETAFLN---KKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKR 551
GD + K + FL KK L +++E + P+ IVF N+ +KV +I+ +
Sbjct: 933 IGDPGAGKRSIEQKLEFLTEGKKKQKLQEILEMYEPPI---IVFVNQ----KKVADIISK 985
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHV 610
K + + + H QE R E T S K A LV TD A RGID GV V
Sbjct: 986 SITK-MKYKAVALHGGKAQEIR-----EQTLSAFKNAEFDILVATDVAGRGIDVHGVKLV 1039
Query: 611 VLFDFPRDPSEY 622
+ FD P+D Y
Sbjct: 1040 INFDMPKDIESY 1051
Score = 42 (19.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 23/100 (23%), Positives = 37/100 (37%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSGTKI--DRGWRSGGSIHNLQYEPTDCPKQRHKYS 259
DND ++ D N D N+ N + + + D G +N+ Y+ K
Sbjct: 67 DNDNNDDNDDDNNDDNNNDVNNNNVNNNDVNNDDVNNDGEKRNNISYDKNK--KNLFNEK 124
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
D S K K+ + S K Q+ +P Q + F
Sbjct: 125 NDNIVHSSKYKKDNQTQEDDTSSNKIQSKDKPKQNEKTKF 164
Score = 41 (19.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 198 EHIVDNDVPAESIDKNISDYNSRSNKHEK 226
+HI D+ E++ + YN R+NK K
Sbjct: 362 DHINDDKEYNENVYDEDTYYNDRNNKKFK 390
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 304 (112.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 106/372 (28%), Positives = 175/372 (47%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ ++E S+ +++++K+ + +P+ IQ A P +E + I ++GSGKT A++LP++
Sbjct: 698 RKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPML 757
Query: 328 QRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFR 385
++Q L L+ TS P +++AP+ ELA Q+ S C R++ V GG
Sbjct: 758 SYVKQ--LPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSC--RTVAVVGGRN 813
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q L+ GV+++I TPGR +++ L ILDE D + D FE + +
Sbjct: 814 AEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMM-DMGFEDTVHYI 872
Query: 446 ISSSPVTA-----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+ P + L + + + ++L + M P + R+S S
Sbjct: 873 LDKIPTSNLKSEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYIS 932
Query: 501 -GDQESDKTP---ETAFLN---KKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKR 551
GD + K + FL KK L +++E + P+ IVF N+ +KV +I+ +
Sbjct: 933 IGDPGAGKRSIEQKLEFLTEGKKKQKLQEILEMYEPPI---IVFVNQ----KKVADIISK 985
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHV 610
K + + + H QE R E T S K A LV TD A RGID GV V
Sbjct: 986 SITK-MKYKAVALHGGKAQEIR-----EQTLSAFKNAEFDILVATDVAGRGIDVHGVKLV 1039
Query: 611 VLFDFPRDPSEY 622
+ FD P+D Y
Sbjct: 1040 INFDMPKDIESY 1051
Score = 42 (19.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 23/100 (23%), Positives = 37/100 (37%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHEKSGTKI--DRGWRSGGSIHNLQYEPTDCPKQRHKYS 259
DND ++ D N D N+ N + + + D G +N+ Y+ K
Sbjct: 67 DNDNNDDNDDDNNDDNNNDVNNNNVNNNDVNNDDVNNDGEKRNNISYDKNK--KNLFNEK 124
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
D S K K+ + S K Q+ +P Q + F
Sbjct: 125 NDNIVHSSKYKKDNQTQEDDTSSNKIQSKDKPKQNEKTKF 164
Score = 41 (19.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 198 EHIVDNDVPAESIDKNISDYNSRSNKHEK 226
+HI D+ E++ + YN R+NK K
Sbjct: 362 DHINDDKEYNENVYDEDTYYNDRNNKKFK 390
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 223 (83.6 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 72/268 (26%), Positives = 127/268 (47%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ G ++ + F +PS IQ + P + G+ + ++G+GKT A+++P ++
Sbjct: 49 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET 108
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + +SK + +IL PT ELA Q C++L K + MV TGG +
Sbjct: 109 INPK----VSKI-----QCLILVPTRELAMQTSQVCKTLGK-HLGINVMVTTGGTTLRDD 158
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ LQ+ V +++ TPGR + L + + L I+DE D L + E F ++ L+
Sbjct: 159 ILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIE-FTPVIEQLLQFH 217
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT P+ V+ F D K + P + I+ ++E + G +
Sbjct: 218 PKDRQVMLFSATFPIS-----VKEFSD-KNMTNP--YEINL-MDELTL--RGITQYYAFV 266
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCN 537
E K L L K ++++I+FCN
Sbjct: 267 EEK--QKVHCLNTLFSKLQINQSIIFCN 292
Score = 117 (46.2 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 34/114 (29%), Positives = 55/114 (48%)
Query: 512 AFLNKKS---ALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AF+ +K L L K ++++I+FCN + +VE + K+ E HA +
Sbjct: 264 AFVEEKQKVHCLNTLFSKLQINQSIIFCN---STNRVELLAKKIT--ELGYSCFYSHAKM 318
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ R +F + LVC+D +RGID V+ V+ FDFP++ Y
Sbjct: 319 QQQARNRVFHDFRNGVCRN----LVCSDLLTRGIDIQAVNVVINFDFPKNAETY 368
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 291 (107.5 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 102/347 (29%), Positives = 171/347 (49%)
Query: 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343
K F +P+ IQ++++P ++ GK I ++GSGKT A+ +P I + G +K+ S
Sbjct: 169 KLSKFDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGVPAINNIITT---GNTKTLS 225
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
V+ ++PT ELA Q+ N L+ GV + V GG + Q+ ++ +V++A
Sbjct: 226 ----VLCISPTRELALQIYDNLIELTADSGV--NCVAVYGGVSKDDQIRKIKTA-NVVVA 278
Query: 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS-SPVTAQYLFVTAT 461
TPGR + LI +G + L + +LDE D + ++ FE ++++IS+ S Q L TAT
Sbjct: 279 TPGRLVDLINDGAINLGKVNYLVLDEADRML-EKGFEEDIKTIISNTSNSERQTLMFTAT 337
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF-LNKKSAL 520
P E+ +L F + V +++ G + L S ++ + E +K+ L
Sbjct: 338 WPKEV-RELANNFMNSPV-------KVTVGDRDEL---SANKRITQVVEVINKFDKEKKL 386
Query: 521 LQLIEK-----SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
+QL+ K S +K ++F ++EN LKR R V H L Q+ R A
Sbjct: 387 IQLLRKYNANESSDNKILIFALYKKEASRIENFLKR-----NRFSVAAIHGDLSQQQRTA 441
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ F + +S L+ TD A+RG+D V V+ FP +Y
Sbjct: 442 ALSAFKSGQSN----LLLATDVAARGLDIPNVKVVINLTFPLTIEDY 484
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 289 (106.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 85/284 (29%), Positives = 133/284 (46%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + Y++++L QNF P+ IQ FP + G+ + Q+GSGKTLAYLLP I
Sbjct: 91 AFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIV 150
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA QV KC +S + GG +
Sbjct: 151 HINHQPY--LERGDG--PICLVLAPTRELAQQVQQVADDYGKCS-RLKSTCIYGGAPKGP 205
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 206 QIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML-DMGFEPQIRKIVDQ 264
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ +L E F V + G +S +VD + E D
Sbjct: 265 IRPDRQTLMWSATWPKEV-RQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKD- 322
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551
+K L++ I +KTI+F C + ++R
Sbjct: 323 -------HKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRR 359
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 292 (107.8 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 105/369 (28%), Positives = 173/369 (46%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 181 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 240
Query: 328 QRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 241 SQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 299
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 300 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 358
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G R+ E
Sbjct: 359 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVG--RVGSTSEN 415
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
+ESDK +S LL L+ + S T+VF V +K + L+ F
Sbjct: 416 ITQKVVWVEESDK---------RSFLLDLLNATGKDSLTLVF----VETKKGADSLEDFL 462
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 463 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 517
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 518 DLPSDIEEY 526
>UNIPROTKB|A4RGU2 [details] [associations]
symbol:DBP4 "ATP-dependent RNA helicase DBP4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 OrthoDB:EOG4R53B0
RefSeq:XP_003715000.1 ProteinModelPortal:A4RGU2 STRING:A4RGU2
EnsemblFungi:MGG_08049T0 GeneID:2678339 KEGG:mgr:MGG_08049
Uniprot:A4RGU2
Length = 798
Score = 223 (83.6 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 62/195 (31%), Positives = 109/195 (55%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F EL S+ + ++ +F + IQA A P ++G+ + A ++GSGKTLA+L+P++
Sbjct: 49 KAFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLL 108
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++L +E Q ++ G+ ++L+PT ELA Q R + + + F + +V GG +
Sbjct: 109 EKLYRE--QWTQEAKLGA---LVLSPTRELAVQTFQVLRKIGRHHL-FSAGLVIGGKSVR 162
Query: 388 TQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ E L +++LI TPGR + L + + NL+ +LDE D + D F+ + +L+
Sbjct: 163 EEAEALSR-MNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIM-DLGFQRDVDALV 220
Query: 447 SSSPVTAQYLFVTAT 461
P T Q L +AT
Sbjct: 221 QHLPTTRQTLLFSAT 235
Score = 122 (48.0 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 45/150 (30%), Positives = 68/150 (45%)
Query: 511 TAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
T K L I+ + SK +VF + + ++V + + F + + + +L H Q
Sbjct: 275 TPLPEKLDTLWGFIKANLKSKMVVFLS---SGKQVRFVYESFRQMQPGIPLLHMHGRQKQ 331
Query: 571 ETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXX 630
RL K F +S K A LF TD +RGIDF GVD VV D P D +Y
Sbjct: 332 LARLDVTKRFDSS--KHACLF--ATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTA 387
Query: 631 XXXXXXXKAFIFV-VGKQVSLAQRIMERNR 659
KA IF+ ++ + +R+ ER +
Sbjct: 388 RYEREG-KAVIFLDPSEEAGMLKRL-ERKK 415
>TAIR|locus:2159517 [details] [associations]
symbol:PDE340 "PIGMENT DEFECTIVE 340" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268799 EMBL:AB006697 EMBL:AJ010474
IPI:IPI00522710 PIR:T51747 RefSeq:NP_196478.2 UniGene:At.32551
ProteinModelPortal:Q9FNM7 SMR:Q9FNM7 STRING:Q9FNM7 PaxDb:Q9FNM7
PRIDE:Q9FNM7 EnsemblPlants:AT5G08610.1 GeneID:830762
KEGG:ath:AT5G08610 GeneFarm:949 TAIR:At5g08610 InParanoid:Q9FNM7
OMA:GRNDRNV PhylomeDB:Q9FNM7 ProtClustDB:CLSN2918084
Genevestigator:Q9FNM7 GermOnline:AT5G08610 Uniprot:Q9FNM7
Length = 850
Score = 297 (109.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 102/386 (26%), Positives = 180/386 (46%)
Query: 249 TDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
TD P H ++D + S+ F + S ++++K F + +Q P +++GK
Sbjct: 364 TDKPTGEHVKTSDS-YLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDV 422
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV-ILAPTAELASQVLSNCRS 367
+ ++G+GKT+A+LLP I+ + + S+ + P +V ++ PT ELASQ + +
Sbjct: 423 LAKAKTGTGKTVAFLLPAIEAVIKSP--PASRDSRQPPIIVLVVCPTRELASQAAAEANT 480
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEG-VDVLIATPGRFMFLIKE--GIL-QLINLRC 423
L K VV GG + T+ +Q +L+ATPGR I+ G +L+ ++
Sbjct: 481 LLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKV 540
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
+LDE D L D F ++ +I++ P Q +AT+P E+ ++ C V +
Sbjct: 541 LVLDEADHLL-DMGFRRDIERIIAAVPKQRQTFLFSATVPEEVR----QI---CHVALKR 592
Query: 484 GMHRISPGLEEFLVDCSGDQESDKTPE--TAFLNKKSALLQLIEKSPVS-----KTIVFC 536
H ++E SG+ T A L++ +LL ++ K ++ K I+FC
Sbjct: 593 D-HEFINCVQEG----SGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFC 647
Query: 537 NKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596
+ R V ++L + + V H+ Q R EF S++ + LV +D
Sbjct: 648 TTAMVTRLVADLLSQLS-----LNVREIHSRKPQSYRTRVSDEFRKSKA----IILVTSD 698
Query: 597 RASRGIDFAGVDHVVLFDFPRDPSEY 622
++RG+D+ V VV P D +Y
Sbjct: 699 VSARGVDYPDVSLVVQMGLPSDREQY 724
Score = 44 (20.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 24/102 (23%), Positives = 39/102 (38%)
Query: 149 SSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAE 208
SSF + V + R + + GR + S +FR G + D +V +
Sbjct: 224 SSFRGRNDRNVDSGSSFRGRSDRNVDSGSSFRGRSDRNVDSGSSFR--GRN--DRNVDSG 279
Query: 209 SIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTD 250
S + +D N S + G++ +RG G L E D
Sbjct: 280 SSFRGRNDRNVESGFRREPGSENNRGL--GKQTRGLSLEEED 319
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 228 (85.3 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 71/271 (26%), Positives = 131/271 (48%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ + +++ + F PS IQ+ A ++ G+ I QSG+GKT + + ++
Sbjct: 26 RTFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGML 85
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E + SK + +IL+PT ELA Q+ + + L + + GG
Sbjct: 86 -----EVIDTKSKEC----QALILSPTRELAIQIQNVVKHLGDY-MNIHTHACIGGKNVG 135
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
++ LQ+G ++ TPGR + +IK LQ N++ ILDE D LF + F+ + +
Sbjct: 136 EDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFT-KGFKEQIYEIYK 194
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P + Q + V+ATLP E+ + D K+++ +S G++++ V C ++E
Sbjct: 195 HLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS-GIKQYYVQC--EREDW 251
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
K F L L + +++ ++FCN
Sbjct: 252 K-----F----DTLCDLYDNLTITQAVIFCN 273
Score = 102 (41.0 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + +++ ++FCN T KV + + K+ V+ H + Q+ R +
Sbjct: 252 KFDTLCDLYDNLTITQAVIFCN---TKLKVNWLADQM--KKQNFTVVAMHGDMKQDERDS 306
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
M +F S+ L+ TD +RGID V V+ +D P D Y
Sbjct: 307 IMNDFRRGNSR----VLISTDVWARGIDVQQVSLVINYDLPTDKENY 349
>UNIPROTKB|F1N533 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:DAAA02005160 IPI:IPI00904747
Ensembl:ENSBTAT00000045489 OMA:TENKGES Uniprot:F1N533
Length = 670
Score = 235 (87.8 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 59/201 (29%), Positives = 111/201 (55%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ ++++K F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 174 FEDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 233
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P ++ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 234 LIPAVELI--VKLKFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 287
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + + + L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 288 GSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 345
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 346 ELKQIIKLLPTRRQTMLFSAT 366
Score = 106 (42.4 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + VL H Q R +
Sbjct: 416 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYID-----LPVLAIHGRQKQNKRTTTFFQ 470
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 471 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 509
>UNIPROTKB|F1MSX0 [details] [associations]
symbol:F1MSX0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:DAAA02009745
IPI:IPI00903923 Ensembl:ENSBTAT00000039166 Uniprot:F1MSX0
Length = 674
Score = 235 (87.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 59/201 (29%), Positives = 111/201 (55%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ ++++K F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 178 FEDTSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 237
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P ++ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 238 LIPAVELI--VKLKFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 291
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + + + L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 292 GSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 349
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 350 ELKQIIKLLPTRRQTMLFSAT 370
Score = 106 (42.4 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + VL H Q R +
Sbjct: 420 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYID-----LPVLAIHGRQKQNKRTTTFFQ 474
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 475 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 513
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 238 (88.8 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 74/211 (35%), Positives = 109/211 (51%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF EL +I++ K N+ +P+ IQ+ A PP +EG I Q+GSGKT A+ +P
Sbjct: 79 SFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIP 138
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV-ILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGG 383
++ RL ++ P ILAPT ELA Q+ SL S GV RS + GG
Sbjct: 139 ILNRLWHDQ----------EPYYACILAPTRELAQQIKETFDSLGSLMGV--RSTCIVGG 186
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVA 441
Q +L ++IATPGR M ++ +G L L+ ++DE D L D +F
Sbjct: 187 MNMMDQARDLMRKPHIIIATPGRLMDHLENTKGF-SLRKLKFLVMDEADRLL-DMEFGPV 244
Query: 442 LQSLISSSPVTAQ--YLFVTATLPVEIYNKL 470
L ++ P + YLF +AT+ +I +KL
Sbjct: 245 LDRILKIIPTQERTTYLF-SATMTSKI-DKL 273
Score = 97 (39.2 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 30/108 (27%), Positives = 49/108 (45%)
Query: 516 KKSALLQLIEKSPVSKT-IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K + L+ L+ + + KT I+F ++ + + T + H L+Q R+
Sbjct: 308 KNTYLIYLLNEF-IGKTMIIFTRTKANAERLSGLCNLLEFSATAL-----HGDLNQNQRM 361
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ F + R LV TD A+RG+D VD VV +D P D Y
Sbjct: 362 GSLDLFKAGK----RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSY 405
Score = 39 (18.8 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 161 AVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFREL 196
A +K+ + K+ + + + + S E+F EL
Sbjct: 51 ATAEKKKVLKSKSKSTVSTQNENTNEDESFESFSEL 86
>UNIPROTKB|F1NM06 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:AADN02026504
EMBL:AADN02026505 EMBL:AADN02026506 EMBL:AADN02026507
EMBL:AADN02026508 EMBL:AADN02026509 EMBL:AADN02026510
IPI:IPI00573288 ProteinModelPortal:F1NM06
Ensembl:ENSGALT00000005588 Uniprot:F1NM06
Length = 690
Score = 236 (88.1 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 83/302 (27%), Positives = 151/302 (50%)
Query: 185 KTTPSLENFRE-LGEHIV-DNDVPAE-SIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSI 241
K PS+ NF++ + E + P++ S+ K N+ N+ +KS I ++
Sbjct: 18 KPKPSVNNFKKRVAETGTREKGRPSKRSLPKK--QLNANQNESQKSKLFI----KTSSLF 71
Query: 242 HNLQYEPTDCPKQRHK--YSADGDFFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMA 298
N P D P+ K + F+ SF +L ++I ++ + +Q
Sbjct: 72 RN---NP-DIPEIHRKAVQQVQENVFTTDSFSQLDLHPHLIATITTVLKICSMTSVQKQT 127
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P +++GK ++ Q+GSGKTLAY +P++Q L + +Q + + G P ++L PT ELA
Sbjct: 128 IPVLLQGKDALVRSQTGSGKTLAYGIPLVQSL--QGMQSKIQRSDG-PYALVLVPTRELA 184
Query: 359 SQVLSNCRSLSKCGVPFRSMV---VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG- 414
Q + L K PF +V + GG ++K++ L++G+++LI+TPGR + IK
Sbjct: 185 LQTFDTIQKLLK---PFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTE 241
Query: 415 ILQLINLRCAILDEVDILFN---DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471
+ + I+DE D + + ++D V L +L ++ T Q + ++ATL E +L
Sbjct: 242 CIHFRRTQWLIIDEADRILDLGFEKDVTVILNAL-NAERETRQNVLLSATL-TEGVTRLA 299
Query: 472 EV 473
++
Sbjct: 300 DI 301
Score = 105 (42.0 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
KR +++ L H ++QE R +EF S++ L+CTD A+RG+D V
Sbjct: 410 KRSSVSSVQLQFLRLHGNMEQEERTEVFQEFLKSKTG----ILLCTDVAARGLDLPQVTW 465
Query: 610 VVLFDFPRDPSEY 622
+V ++ P P+EY
Sbjct: 466 IVQYNAPASPAEY 478
>UNIPROTKB|E2RIC4 [details] [associations]
symbol:DDX24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:DQQEERR
GeneTree:ENSGT00550000074847 EMBL:AAEX03005950
Ensembl:ENSCAFT00000027950 Uniprot:E2RIC4
Length = 818
Score = 225 (84.3 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 88/316 (27%), Positives = 149/316 (47%)
Query: 329 RLRQEELQGLSKSTSGSPRV----VILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGG 383
RL+QE L G + P+ ++L PT ELA QV + +++K G+ ++ ++ GG
Sbjct: 327 RLKQE-LGGKMTTCKVHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGI--KTAILVGG 383
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDF-E 439
+ Q L ++++ATPGR LIKE L NLR C ++DE D + F E
Sbjct: 384 MSTQKQQRMLNRQPEIVVATPGRLWELIKEKHPHLSNLRQLRCLVVDEADRMVEKGHFAE 443
Query: 440 VA-LQSLISSSPVTA--QYLFVTATL------PVEIYNKLVEVFPDCKVVMGPGMHRISP 490
++ L ++ S Q L +ATL P I +K D + + +I
Sbjct: 444 LSQLLEMLGDSQYNPKRQTLIFSATLTLVHQAPARILHKKHTKKIDKTAKLDLFVQKIGM 503
Query: 491 GLEEFLVDCSGDQESDKT-PETAF---LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVE 546
+ ++D + ++ + +T ET ++K L +T+VF N I +++
Sbjct: 504 RGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLS 563
Query: 547 NILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG 606
+LK D + L HA + Q+ RL N+++F +R ++ L+ TD A+RG+D
Sbjct: 564 GLLKVLD-----IMPLTLHACMHQKQRLRNLEQF--ARLEDC--VLLATDVAARGLDIPK 614
Query: 607 VDHVVLFDFPRDPSEY 622
V HV+ + PR Y
Sbjct: 615 VQHVIHYQVPRTSEIY 630
Score = 119 (46.9 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 49/189 (25%), Positives = 89/189 (47%)
Query: 155 KAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENF--RELGEHIV-DNDV-PAESI 210
KAQ V + S+ KK + K + ++ T + F R+ G D V P I
Sbjct: 78 KAQAVSGGEEGESSSSKKKIKLKKNKDTETEGTSVQKEFEVRDAGPQPQGDGTVYPDPEI 137
Query: 211 DKNISDYNSRS--NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK 268
++ +S+ ++ + K +K G K + S G+ + + + H + AD
Sbjct: 138 EEVVSEGSAPTVPKKKKKKGKK--KLEPSQGTAPKVPKKAKTWMPEMHDHKADVT----- 190
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL-ADQSGSGKTLAYLLPVI 327
++K+L ++ +L F P+ IQA+ P + K IL A ++GSGKTLA+ +P+I
Sbjct: 191 AWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMI 250
Query: 328 QRLRQEELQ 336
+ Q +++
Sbjct: 251 HTVLQWQVK 259
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 205 (77.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 61/202 (30%), Positives = 105/202 (51%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+LG +D + E+ + + +P++IQ A P ++G+ I ++GSGKT A+ LP++
Sbjct: 26 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQ 386
L E Q L ++L PT ELA Q+ +L S GV + V+ GG
Sbjct: 86 NALL-ETPQRLF--------ALVLTPTRELAFQISEQFEALGSSIGV--QCAVIVGGIDS 134
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+Q L + ++IATPGR + ++ +G L L+ ++DE D + N DFE +
Sbjct: 135 MSQSLALAKKPHIVIATPGRLIDHLENTKGF-NLRALKYLVMDEADRILN-MDFETEVDK 192
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
++ P + +AT+ ++
Sbjct: 193 ILKVIPRDRKTFLFSATMTKKV 214
Score = 131 (51.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L+ ++ + + ++FC+ TC + + +P H + Q RL
Sbjct: 252 KDTYLVYILNELAGNSFMIFCS---TCNNTQRTALLL--RNLGFTAIPLHGQMSQSKRLG 306
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
++ +F ++K AR L+ TD ASRG+D VD VV FD P +Y
Sbjct: 307 SLNKF---KAK-ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRS 362
Query: 636 XXKAFIFVVGKQVSLAQRI 654
KA FV V L QRI
Sbjct: 363 G-KAITFVTQYDVELFQRI 380
>UNIPROTKB|I3L840 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025310 Uniprot:I3L840
Length = 667
Score = 234 (87.4 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 59/201 (29%), Positives = 110/201 (54%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ + ++K F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 171 FEDTSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 230
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P ++ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 231 LIPAVELI--VKLRFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 284
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + + + L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 285 GSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 342
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 343 ELKQIIKLLPTRRQTMLFSAT 363
Score = 106 (42.4 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + VL H Q R +
Sbjct: 413 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYID-----LPVLAIHGRQKQNKRTTTFFQ 467
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 468 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 506
>UNIPROTKB|F1RY13 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
OMA:KDGYRSY GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000017112 Uniprot:F1RY13
Length = 671
Score = 234 (87.4 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 59/201 (29%), Positives = 110/201 (54%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ + ++K F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 175 FEDTSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 234
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P ++ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 235 LIPAVELI--VKLRFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 288
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + + + L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 289 GSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 346
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 347 ELKQIIKLLPTRRQTMLFSAT 367
Score = 106 (42.4 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + VL H Q R +
Sbjct: 417 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYID-----LPVLAIHGRQKQNKRTTTFFQ 471
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 472 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 510
>UNIPROTKB|I3L7B7 [details] [associations]
symbol:DDX18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00680000100037 EMBL:CU406995
Ensembl:ENSSSCT00000025125 Uniprot:I3L7B7
Length = 696
Score = 234 (87.4 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 59/201 (29%), Positives = 110/201 (54%)
Query: 265 FSRKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
F SF L ++ + ++K F ++IQ + P++EG+ + A ++GSGKTLA+
Sbjct: 200 FEDTSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 259
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P ++ + +L+ + ++ +G V+IL+PT ELA Q + L V +++ G
Sbjct: 260 LIPAVELI--VKLRFMPRNGTG---VLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-G 313
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEV 440
G + + + L G+++++ATPGR + ++ G + NL+C ++DE D + D FE
Sbjct: 314 GSNRSAEAQKLANGINIVVATPGRLLDHMQNTPGFMYK-NLQCLVIDEADRIL-DVGFEE 371
Query: 441 ALQSLISSSPVTAQYLFVTAT 461
L+ +I P Q + +AT
Sbjct: 372 ELKQIIKLLPTRRQTMLFSAT 392
Score = 106 (42.4 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 31/103 (30%), Positives = 47/103 (45%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + VL H Q R +
Sbjct: 442 LFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYID-----LPVLAIHGRQKQNKRTTTFFQ 496
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + S L+CTD A+RG+D VD +V +D P DP EY
Sbjct: 497 FCNADSG----ILLCTDVAARGLDIPEVDWIVQYDPPDDPKEY 535
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 250 (93.1 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 65/216 (30%), Positives = 107/216 (49%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P+ I
Sbjct: 249 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 308
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ S C+ K RS+ V GG
Sbjct: 309 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 362
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + LQEG ++++ TPGR + +K+ L + + DE D +F D FE ++S+ S
Sbjct: 363 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMF-DMGFEYQVRSIAS 421
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
Q L +AT +I ++ D +VV G
Sbjct: 422 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 457
Score = 89 (36.4 bits), Expect = 3.1e-22, Sum P(2) = 3.1e-22
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
+L+E + ++F K ++ N LK+ D + +L H +DQ R + EF
Sbjct: 486 RLVEFTSSGSVLLFVTKKANAEELANNLKQEDHN---LGLL--HGDMDQSERNKVISEF- 539
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
K+ LV TD A+RG+D + V+ +D RD
Sbjct: 540 ---KKKGIPILVATDVAARGLDIPSIKTVINYDVARD 573
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 218 (81.8 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/236 (26%), Positives = 112/236 (47%)
Query: 232 DRGWRSGGSIHNLQYEPTDC-PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLR 290
D W+ NL P D P+ + G KSF++ ++ + F +
Sbjct: 3 DTNWKQ-----NLNLPPKDTRPQTEDVLNTKG-----KSFEDFNLKRELLMGIFEAGFEK 52
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
PS IQ + P + G+ + ++G+GKT ++++P +Q ++ + L+K + +I
Sbjct: 53 PSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPK----LNKV-----QALI 103
Query: 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
L PT ELA Q R+L K V + MV TGG + + L + V +L+ TPGR + L
Sbjct: 104 LVPTRELALQTSQVVRTLGK-HVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDL 162
Query: 411 IKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
++ L ++DE D + + E F+ ++ ++ P Q L +AT P+ +
Sbjct: 163 AARKVVDLSECPLFVMDEADKMLSRE-FKGIIEQILEFFPPNRQALLFSATFPLAV 217
Score = 119 (46.9 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 512 AFLNKKSAL--LQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AF+ +K L L L K ++++I+FCN + +VE + K+ E HA +
Sbjct: 247 AFVEEKQKLHCLNTLFSKLQINQSIIFCN---STNRVELLAKKIT--ELGYSCYYSHAKM 301
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ R EF + + LVC+D +RGID V+ V+ FDFP+ Y
Sbjct: 302 PQQARNKVFHEFRQGKVRN----LVCSDLLTRGIDIQAVNVVINFDFPKTAETY 351
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 218 (81.8 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 63/236 (26%), Positives = 112/236 (47%)
Query: 232 DRGWRSGGSIHNLQYEPTDC-PKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLR 290
D W+ NL P D P+ + G KSF++ ++ + F +
Sbjct: 3 DTNWKQ-----NLNLPPKDTRPQTEDVLNTKG-----KSFEDFNLKRELLMGIFEAGFEK 52
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
PS IQ + P + G+ + ++G+GKT ++++P +Q ++ + L+K + +I
Sbjct: 53 PSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPK----LNKV-----QALI 103
Query: 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
L PT ELA Q R+L K V + MV TGG + + L + V +L+ TPGR + L
Sbjct: 104 LVPTRELALQTSQVVRTLGK-HVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDL 162
Query: 411 IKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
++ L ++DE D + + E F+ ++ ++ P Q L +AT P+ +
Sbjct: 163 AARKVVDLSECPLFVMDEADKMLSRE-FKGIIEQILEFFPPNRQALLFSATFPLAV 217
Score = 119 (46.9 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 512 AFLNKKSAL--LQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AF+ +K L L L K ++++I+FCN + +VE + K+ E HA +
Sbjct: 247 AFVEEKQKLHCLNTLFSKLQINQSIIFCN---STNRVELLAKKIT--ELGYSCYYSHAKM 301
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
Q+ R EF + + LVC+D +RGID V+ V+ FDFP+ Y
Sbjct: 302 PQQARNKVFHEFRQGKVRN----LVCSDLLTRGIDIQAVNVVINFDFPKTAETY 351
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 240 (89.5 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 65/243 (26%), Positives = 115/243 (47%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R +F +++++ + P++IQ + P ++ + Q+G+GKT A+ LP+
Sbjct: 4 RMTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPI 63
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSLSKCGVPFRSMVVTGGFR 385
+Q+L +Q R ++L PT ELA QV S C V + GG
Sbjct: 64 LQQLIS--VQPCKPEL----RALVLTPTRELAQQVHKSFCHYGQFTDVTIG--IAYGGVS 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
K Q+ L+ GVD+LIATPGR + L++ + L N+ + DE D + D F+ + +
Sbjct: 116 TKKQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRML-DMGFKEEIDQI 174
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT +IY + + K+V ++ + +E+ + D++
Sbjct: 175 TQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKR 234
Query: 506 DKT 508
+ T
Sbjct: 235 ELT 237
Score = 88 (36.0 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPR 617
V+ L H Q R + EF KE ++ L+ TD A+RGID G+ HV+ ++ P
Sbjct: 271 VKSLAIHGDKSQGAREKALHEF-----KEGKVRALIATDVAARGIDIKGLSHVINYELPY 325
Query: 618 DPSEY 622
+ +Y
Sbjct: 326 NAEDY 330
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 240 (89.5 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 65/243 (26%), Positives = 115/243 (47%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R +F +++++ + P++IQ + P ++ + Q+G+GKT A+ LP+
Sbjct: 4 RMTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPI 63
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSLSKCGVPFRSMVVTGGFR 385
+Q+L +Q R ++L PT ELA QV S C V + GG
Sbjct: 64 LQQLIS--VQPCKPEL----RALVLTPTRELAQQVHKSFCHYGQFTDVTIG--IAYGGVS 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
K Q+ L+ GVD+LIATPGR + L++ + L N+ + DE D + D F+ + +
Sbjct: 116 TKKQISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRML-DMGFKEEIDQI 174
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT +IY + + K+V ++ + +E+ + D++
Sbjct: 175 TQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKR 234
Query: 506 DKT 508
+ T
Sbjct: 235 ELT 237
Score = 88 (36.0 bits), Expect = 3.3e-22, Sum P(2) = 3.3e-22
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPR 617
V+ L H Q R + EF KE ++ L+ TD A+RGID G+ HV+ ++ P
Sbjct: 271 VKSLAIHGDKSQGAREKALHEF-----KEGKVRALIATDVAARGIDIKGLSHVINYELPY 325
Query: 618 DPSEY 622
+ +Y
Sbjct: 326 NAEDY 330
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 245 (91.3 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 57/187 (30%), Positives = 103/187 (55%)
Query: 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEE 334
C + ++ ++ + + + IQ A P + G+ + + Q+G+GKT A+ LP++Q++ +
Sbjct: 9 CPE-ILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENP 67
Query: 335 LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ 394
+ L +T RV+IL PT ELA+QV N + SK + F + + GG + +TQ + L+
Sbjct: 68 SETLKSNT----RVLILTPTRELAAQVAENVEAYSKY-LNFSVLTIYGGVKVETQAQKLK 122
Query: 395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454
G D+++ATPGR + + L L ++ +LDE D + D F +Q ++ + Q
Sbjct: 123 RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRML-DMGFSADIQKILQAVNKKRQ 181
Query: 455 YLFVTAT 461
L +AT
Sbjct: 182 NLLFSAT 188
Score = 83 (34.3 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K+ L +LI K + +VF T + ++K + V+ H Q +R
Sbjct: 231 KRELLSELIGKKNWQQVLVFT---ATRDAADTLVKELNLDGIPSEVV--HGEKAQGSRRR 285
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++EF + + + LV T+ A+RG+D +++VV FD P +Y
Sbjct: 286 ALREFVSGKVR----VLVATEVAARGLDIPSLEYVVNFDLPFLAEDY 328
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 222 (83.2 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 61/237 (25%), Positives = 117/237 (49%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF ++G +D ++ + + +PS+IQ A P+++G+ I QSG+GKT + V
Sbjct: 22 KSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVC 81
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q + +S +V++L+P+ ELASQ +++ ++ GG
Sbjct: 82 Q---------IVNISSRKVQVLVLSPSRELASQTEKTIQAIG-AHTNIQAHACIGGKSIG 131
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
++ L+ GV + TPGR +IK G LQ ++ +LDE D + + + + + +
Sbjct: 132 EDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLS-KGLKDQIYDVYR 190
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ P Q ++ATLP EI + D ++++ P + G++++ VD ++
Sbjct: 191 ALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLE-GIKQYYVDVDKEE 246
Score = 106 (42.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L + +++ I+FCN T +KV+ + ++ + + V H Q+ R
Sbjct: 248 KFDTLCDLYGRLTINQAIIFCN---TRQKVDWLTEKM--RSSNFIVSSMHGDKRQKERDD 302
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
M +F RS ++R+ L+ +D +RGID V HV+ +D P +P Y
Sbjct: 303 IMNQF---RSFKSRV-LIASDVWARGIDVQTVSHVINYDIPNNPELY 345
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 255 (94.8 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 63/194 (32%), Positives = 107/194 (55%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P ++ G+ + ++GSGKT +LLP+ +R
Sbjct: 38 FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 97
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ + S SG+ R +IL+PT ELA Q L + L K ++ +V GG + + Q
Sbjct: 98 LK-------APSPSGA-RALILSPTRELALQTLKFTKELGKF-TGLKTALVLGGDKMEDQ 148
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++IATPGR + + E L+L ++ + DE D LF + F LQ +++
Sbjct: 149 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLF-EMGFAEQLQEILARL 207
Query: 450 PVTAQYLFVTATLP 463
P + Q + +ATLP
Sbjct: 208 PGSHQTVLFSATLP 221
Score = 85 (35.0 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 29/104 (27%), Positives = 51/104 (49%)
Query: 515 NKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
+K + LL L+ P +T+VF + T E LK + + +++LDQ
Sbjct: 261 DKPAVLLHLLRCVVKPQDQTVVF---VATKHHTE-YLKELLTSQG-ICCTHIYSSLDQTA 315
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
R N+ +F + + L+ TD A+RG+D +D+V+ + FP
Sbjct: 316 RKINIAKFAHGKCQ----VLLVTDVAARGLDIPMLDNVINYSFP 355
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 207 (77.9 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 57/229 (24%), Positives = 105/229 (45%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E+ ++ + F RPS IQ A PV++G I QSG+GKT + + V+Q
Sbjct: 24 SFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 83
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ Q + +ILAPT ELA Q+ ++ + GG +
Sbjct: 84 KIDTNVKQC---------QALILAPTRELAQQIQKVVVAIGDF-MNIECHACIGGTSVRD 133
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
++ LQ+G V++ TPGR +I+ L+ ++ +LDE D + + F + +
Sbjct: 134 DMKALQDGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLS-RGFTEQIYDIFQL 192
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497
P + Q + ++AT+P ++ + D ++ G+++F +
Sbjct: 193 LPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYI 241
Score = 123 (48.4 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 35/107 (32%), Positives = 54/107 (50%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K L L E +++ ++FCN T RKV+ + + ++ V + H +DQ R
Sbjct: 249 KLDTLSDLYETVTITQAVIFCN---TRRKVDWLTDKLTARDFTVSAM--HGDMDQAQRDL 303
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
MKEF RS +R+ L+ TD +RGID V V+ +D P + Y
Sbjct: 304 IMKEF---RSGSSRV-LIATDLLARGIDVQQVSLVINYDLPANRENY 346
>UNIPROTKB|F1NV49 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 IPI:IPI00585086
EMBL:AADN02018635 EMBL:AADN02018636 Ensembl:ENSGALT00000026560
ArrayExpress:F1NV49 Uniprot:F1NV49
Length = 740
Score = 165 (63.1 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 45/141 (31%), Positives = 72/141 (51%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+++ +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L++G
Sbjct: 280 TQNLPNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVD--ILFNDEDFEVALQSLI---SSSPV 451
VD+++ TPGR L+ G L L +R +LDE D +L DF + S I +S
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGK 399
Query: 452 TAQYLFVTATLPVEIYNKLVE 472
Q + +ATL KL E
Sbjct: 400 RLQVIVCSATLHSFDVKKLSE 420
Score = 112 (44.5 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQMEGKKGKATI 81
Score = 111 (44.1 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 521 LQLIEKSPVSKTIVFCNKIVTCRKVENILKRF----DRKETRVRVLPFHAALDQETRLAN 576
++ I++ + + I+FC + C +E + DRK + + H + R N
Sbjct: 498 VRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQFSCVCLHGDRKPQERKQN 557
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ F + + R FL+CTD A+RGID GV +V+ P + Y
Sbjct: 558 LERF---KRGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNY 599
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 7 QVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVL 41
Q+ +K GL PP RN L CVL
Sbjct: 202 QIKFSKNGKDLGLAFEFPPHIRNQ---ALFAACVL 233
Score = 37 (18.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 371 CGVPFRSMVVTG--GFRQKTQLENLQEGVDVLIATPGR 406
C P ++V + G Q Q +NL LI P R
Sbjct: 259 CKAPDGNVVKSQHTGNAQVVQTQNLPNAPKALIVEPSR 296
>UNIPROTKB|Q90WU3 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003712 "transcription
cofactor activity" evidence=ISS] [GO:0006302 "double-strand break
repair" evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 OrthoDB:EOG46HG95 EMBL:AY057383
IPI:IPI00585086 RefSeq:NP_989894.1 UniGene:Gga.14606 HSSP:P10081
ProteinModelPortal:Q90WU3 STRING:Q90WU3 PRIDE:Q90WU3 GeneID:395249
KEGG:gga:395249 HOGENOM:HOG000251633 NextBio:20815338
Uniprot:Q90WU3
Length = 740
Score = 165 (63.1 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 45/141 (31%), Positives = 72/141 (51%)
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEG 396
+++ +P+ +I+ P+ ELA Q L+N + K R +++ GG + QL L++G
Sbjct: 280 TQNLPNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQG 339
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVD--ILFNDEDFEVALQSLI---SSSPV 451
VD+++ TPGR L+ G L L +R +LDE D +L DF + S I +S
Sbjct: 340 VDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGK 399
Query: 452 TAQYLFVTATLPVEIYNKLVE 472
Q + +ATL KL E
Sbjct: 400 RLQVIVCSATLHSFDVKKLSE 420
Score = 112 (44.5 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G + ++++ ++L P+ IQA + P ++ G ++A ++GSGKT A+ +PVIQ
Sbjct: 3 AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRV 348
+ E L+ + G +
Sbjct: 63 -IVYETLKDQMEGKKGKATI 81
Score = 111 (44.1 bits), Expect = 4.0e-22, Sum P(3) = 4.0e-22
Identities = 29/106 (27%), Positives = 51/106 (48%)
Query: 521 LQLIEKSPVSKTIVFCNKIVTCRKVENILKRF----DRKETRVRVLPFHAALDQETRLAN 576
++ I++ + + I+FC + C +E + DRK + + H + R N
Sbjct: 498 VRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQFSCVCLHGDRKPQERKQN 557
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ F + + R FL+CTD A+RGID GV +V+ P + Y
Sbjct: 558 LERF---KRGDVR-FLICTDVAARGIDIHGVPYVINVTLPDEKQNY 599
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 7 QVMLAKAAASFGLPLASPPLRRNSNTDKLMNKCVL 41
Q+ +K GL PP RN L CVL
Sbjct: 202 QIKFSKNGKDLGLAFEFPPHIRNQ---ALFAACVL 233
Score = 37 (18.1 bits), Expect = 1.0e-08, Sum P(3) = 1.0e-08
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 371 CGVPFRSMVVTG--GFRQKTQLENLQEGVDVLIATPGR 406
C P ++V + G Q Q +NL LI P R
Sbjct: 259 CKAPDGNVVKSQHTGNAQVVQTQNLPNAPKALIVEPSR 296
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 240 (89.5 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 79/284 (27%), Positives = 148/284 (52%)
Query: 263 DFFSRKSFKEL-G-CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+F ++ +F L G + ++++++ F ++IQA + P++EGK + + ++GSGKTL
Sbjct: 61 EFLTKTTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTL 120
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
A+LLP I+ L + L + +G V+I++PT EL+ Q L + G +V
Sbjct: 121 AFLLPAIELLHK--LNWKQHNGTG---VIIVSPTRELSMQTYGVLSELLE-GSNLTYGLV 174
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI-NLRCAILDEVDILFNDEDFE 439
GG + + + L +GV +L+ATPGR + ++ L+ N++C I+DE D + D FE
Sbjct: 175 MGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRIL-DIGFE 233
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+ +Q ++ P Q + +AT ++ ++LV++ + P + EE V+
Sbjct: 234 IEMQQVLRHLPKQRQSMLFSATHSPKV-DELVKL----ALHSNPVRVSVHEKAEEATVE- 287
Query: 500 SGDQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVF---CNKI 539
G Q+ + +K+ LL ++K+ K +VF CN +
Sbjct: 288 -GLQQGYIVAPS---DKRLLLLFTFLKKNKTKKVMVFFSSCNSV 327
Score = 94 (38.1 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 26/103 (25%), Positives = 46/103 (44%)
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L ++K+ K +VF + + + +L D + + H Q+ R +
Sbjct: 305 LFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYID-----IPCMSIHGKQKQQKRTTTFFQ 359
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
F + + L+CTD A+RG+D VD +V +D +P EY
Sbjct: 360 FCQAETG----ILLCTDVAARGLDIPAVDWIVQYDPTDEPREY 398
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 231 (86.4 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 54/193 (27%), Positives = 97/193 (50%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ ++ S+ + + +P+ IQ + P + GK + + +G+GKT A+LLP+ Q
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ G PRV+IL PT ELA Q+ + L++ ++ V+TGG +
Sbjct: 75 LLD-----YPRTKPGFPRVLILTPTRELAIQIGEDSEQLTEL-TKIKTGVITGGVNYGSH 128
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L D+L+ATPGR + I+ + +LDE D + D F + +++ +
Sbjct: 129 ADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRML-DLGFSETINRIVAEA 187
Query: 450 PVTAQYLFVTATL 462
Q + +ATL
Sbjct: 188 RWRKQTMLFSATL 200
Score = 98 (39.6 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 30/108 (27%), Positives = 55/108 (50%)
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
+K + L+ +++ V +T+VF NK T V+ + + +E + + + Q+ R
Sbjct: 243 HKLNLLVNTLKQEGVERTVVFANKRET---VQYLSGKLYAEE--LPCVWLEGKMPQDKRN 297
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++ F + E ++ LV TD A+RG+D + HV+ FD PR Y
Sbjct: 298 KAIERF---KKGEVKV-LVATDVAARGLDIDDISHVINFDMPRKVDIY 341
>TAIR|locus:2153564 [details] [associations]
symbol:AT5G05450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB010692 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AJ010469 IPI:IPI00516547
PIR:T51344 RefSeq:NP_196164.1 UniGene:At.23004
ProteinModelPortal:Q9FLB0 SMR:Q9FLB0 PaxDb:Q9FLB0 PRIDE:Q9FLB0
EnsemblPlants:AT5G05450.1 GeneID:830428 KEGG:ath:AT5G05450
GeneFarm:935 TAIR:At5g05450 InParanoid:Q9FLB0 OMA:MDSSANI
PhylomeDB:Q9FLB0 ProtClustDB:CLSN2679231 Genevestigator:Q9FLB0
GermOnline:AT5G05450 Uniprot:Q9FLB0
Length = 593
Score = 287 (106.1 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 113/394 (28%), Positives = 183/394 (46%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+R S E S +IE+L + +F + +QA P + K + +GSGKTLA+++P
Sbjct: 14 TRFSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP 73
Query: 326 VIQRLRQEELQGLSKSTSGSPRV-----VILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+++ LR +STS P+ VI++PT EL++Q+ + + S+++
Sbjct: 74 LVEILR--------RSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLL 125
Query: 381 TGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDF 438
GG K ++ ++E G +VLI TPGR +++ IL NL ILDE D L + F
Sbjct: 126 VGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL-EMGF 184
Query: 439 EVALQSLISSSPVTAQY-LF-VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496
+ + +IS P + LF T T VE K P V S L
Sbjct: 185 QRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSK 244
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVEN---ILKRFD 553
SG E K S L+ L+ K+ K IVF +TC V+ +L +
Sbjct: 245 TP-SGLHLEYMECEAD--KKSSQLVDLLIKNSDKKLIVF---FMTCASVDYWGLVLSKIP 298
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
++ + ++P H + Q R + FT + S L+CTD A+RG+D G+D+VV +
Sbjct: 299 ALKS-ISLIPIHGDMKQNARDKALASFTKASSGA----LLCTDVAARGLDIPGIDYVVQY 353
Query: 614 DFPRDPSEYXXXXXXXXXXXXXXXKAFIFVVGKQ 647
D P+DP+ + +A +F++ K+
Sbjct: 354 DPPQDPNMFNHRAGRTARLGRQG-RAIVFLLPKE 386
>FB|FBgn0030855 [details] [associations]
symbol:CG5800 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007526 "larval somatic muscle development"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0022008 EMBL:AE014298
GO:GO:0006200 GO:GO:0003723 GO:GO:0007526 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 OMA:ADKVIEP HSSP:P10081 EMBL:AY119628
RefSeq:NP_573230.1 UniGene:Dm.13464 SMR:Q9VX34 STRING:Q9VX34
EnsemblMetazoa:FBtr0074453 GeneID:32742 KEGG:dme:Dmel_CG5800
UCSC:CG5800-RA FlyBase:FBgn0030855 InParanoid:Q9VX34
OrthoDB:EOG4MCVFH GenomeRNAi:32742 NextBio:780142 Uniprot:Q9VX34
Length = 826
Score = 290 (107.1 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 108/407 (26%), Positives = 187/407 (45%)
Query: 226 KSGTKIDRGWRSGGSIHNLQYEPTDCPKQ--RHKYSADGDFFSRKSFKELGCSDYMIESL 283
KSG + R I+ + T+ Q + KY A+ D + K F + S ++L
Sbjct: 31 KSGDNSQK--RPRQEINKSRLAATEAEIQDLKTKY-AEIDATAIKKFAQFPLSKKTQKAL 87
Query: 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343
F+ P+Q+Q + P ++GK + A +GSGKTLA+L+PV++ L + T
Sbjct: 88 AESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWS----RTD 143
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
G ++I +PT ELA Q+ + + K F + ++ GG K + + + ++LI T
Sbjct: 144 GVGAIII-SPTRELAYQIFETLKKVGKHH-DFSAGLIIGGKNLKFERTRMDQ-CNILICT 200
Query: 404 PGRFMFLIKEG-ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
PGR + + E + + +LDE D D F+ L S+I + P Q L +AT
Sbjct: 201 PGRLLQHMDENPLFNTSTMEMLVLDEADRCL-DMGFQKTLNSIIENFPPVRQTLLFSATQ 259
Query: 463 PVEIYNKLVEVFPDCKVVMGPG--MHRISPGLEEFLVDCSGDQESDKTPETAF--LN--- 515
+ + L + V +G G R P + + + ++ LN
Sbjct: 260 TNTVQD-LARLNLKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQQSYVVLNLED 318
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K + L I+ K IVF + +C++ + + + F + +L + L Q+ R+A
Sbjct: 319 KITMLWSFIKNHLKQKIIVF---VASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIA 375
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
++F +++ + + TD ASRG+DF V+ VV D P D S+Y
Sbjct: 376 IYEDFL----RKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQY 418
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 260 (96.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 78/297 (26%), Positives = 141/297 (47%)
Query: 248 PTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG 305
P + +++H+ + G+ +F+ G ++ L F P+ IQA +P ++
Sbjct: 413 PVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQS 472
Query: 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365
+ + ++GSGKTL YL+P LR + S +G P V+ILAPT ELA+Q+
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCR----NDSRNG-PTVLILAPTRELATQIQDEA 527
Query: 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425
+ + GG + QL+ L+ G D+++ATPGR +++ ++ + +
Sbjct: 528 LRFGRSS-RISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLV 586
Query: 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM 485
LDE D + D FE ++ +++ P Q L TAT P E+ K+ D +++ P
Sbjct: 587 LDEADRML-DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEV-RKIAS---D--LLVNPVQ 639
Query: 486 HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTC 542
I ++E + + Q + P+ + +L+ E+ SK I+FC+ C
Sbjct: 640 VNIGR-VDELAANKAITQYVEVVPQMEKERRLEQILRSQERG--SKVIIFCSTKRLC 693
Score = 83 (34.3 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 514 LNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
+ K+ L Q++ SK I+FC+ T R +++ + R V + H Q
Sbjct: 664 MEKERRLEQILRSQERGSKVIIFCS---TKRLCDHLARSVGRHFGAVVI---HGDKTQGE 717
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
R + +F + +S L+ TD A+RG+D + V+ +DFP +Y
Sbjct: 718 RDWVLNQFRSGKS----CVLIATDVAARGLDIKDIRVVINYDFPTGVEDY 763
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 290 (107.1 bits), Expect = 4.4e-22, P = 4.4e-22
Identities = 113/447 (25%), Positives = 203/447 (45%)
Query: 199 HIVDNDVPAESIDKNISDYNSRSNKHEKSGTKI----DRGWRSGGSIHNLQYEPTDCPKQ 254
+I +N+ + + N ++ N+ +N G +I D W S + ++ K+
Sbjct: 339 NIYNNNNNNNNNNNNNNNINNNNNGSMIGGKQISELPDTHW-SKKPLKSMTKRDWHIFKE 397
Query: 255 RHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
S G ++++E ++E++++ + +PS IQ + P + G+ +
Sbjct: 398 DFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIA 457
Query: 313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKC 371
++GSGKT A+++P++ + ++ L+K T P +++APT EL Q+ R+ ++
Sbjct: 458 ETGSGKTCAFVIPMLIYISKQPR--LTKDTEADGPYALVMAPTRELVQQIEKETRNFAQ- 514
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
FR + + GG + Q + +G +++IATPGR +++ L L +LDE D+
Sbjct: 515 HFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADM 574
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE--------IYNKLVEVFPDCKVVMGP 483
+ D FE + S++ + P + +L E IY + +F M P
Sbjct: 575 MI-DLGFEPQVTSVLDAMP--SSFLKSEDDEMAEKQESDRSHIYRTTI-LF---SATMPP 627
Query: 484 GMHRISPG-LEEFLVDCSGDQES--DKTPETAFL-----NKKSALLQLIEKSPVSKTIVF 535
+ ++S L G+ D+ +T +KK L QLI+ P I+F
Sbjct: 628 LVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIF 687
Query: 536 CNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT 595
NK C + +L+ E RV H+ QE R A ++ F R E L+ T
Sbjct: 688 VNKKKHCDIIAPVLE-----ECRVSYTILHSGRSQEQREAALEGFK-KRKYEV---LIAT 738
Query: 596 DRASRGIDFAGVDHVVLFDFPRDPSEY 622
ASRGI GV HV+ FD P++ +Y
Sbjct: 739 GVASRGIHVDGVTHVINFDIPKNIEDY 765
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 222 (83.2 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 70/236 (29%), Positives = 113/236 (47%)
Query: 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM 408
+IL PT EL QVL +S K +P +S+ V GG + Q+ NL++G D+++ATPGR +
Sbjct: 431 LILLPTRELCLQVLDEIKSFEK-NLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489
Query: 409 FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468
++ G + L+ ++DE D L D FE L+ +++ Q LF+TAT P ++
Sbjct: 490 DFLENGNINLLKCIYVVIDEADRLL-DMGFEKQLRKIMTQVNKNKQLLFLTATWPEQV-R 547
Query: 469 KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSP 528
KL F C P +I G E + + + E + ++ KK L L E
Sbjct: 548 KLAYDF--CSY--DPV--KIQIGKNE--LTANKNIEQNVIISSSIDMKKKLLDWLKENYE 599
Query: 529 VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584
+K ++FC+ T R +N+ K + + L H Q R + + T R
Sbjct: 600 NNKILIFCD---TKRNCDNLCKEL--RYHQYNALSIHGDKQQRERDRILNNYKTDR 650
Score = 118 (46.6 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 46/183 (25%), Positives = 79/183 (43%)
Query: 165 KRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKH 224
K+S N Q R + + + ELG H+ D+ +++ + N +N +
Sbjct: 180 KQSKTNYSYDNDYNQGSRNKRNMSYPDRYEELGSHL--KDIEWDNVKYKMERQNLYNNNY 237
Query: 225 EKSGTKIDRGWRSGGSIHNLQYEPTDCP---------KQRHKY-SADGDFFSR-KSFKEL 273
K D+ + S NL E T+C K+ + Y + DG + F ++
Sbjct: 238 NKCN---DQN-NNQNSNDNLNNEQTNCLSKEDIQNELKKNNIYINKDGIIHNIINKFSDV 293
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR-LRQ 332
C I + F P+ IQ + +P + GK I ++GSGKTLA++LP L+
Sbjct: 294 -CFHESILNYLNNKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKH 352
Query: 333 EEL 335
+E+
Sbjct: 353 KEI 355
Score = 100 (40.3 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 31/107 (28%), Positives = 46/107 (42%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
KK L L E +K ++FC+ T R +N+ K + + L H Q R
Sbjct: 587 KKKLLDWLKENYENNKILIFCD---TKRNCDNLCKEL--RYHQYNALSIHGDKQQRERDR 641
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ + T R LV TD ASRG+D + V+ +D P +Y
Sbjct: 642 ILNNYKTDRCN----ILVATDVASRGLDIKNISVVINYDIPNTIEDY 684
Score = 43 (20.2 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 199 HIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID 232
HI++N E+ D N +++N+ +N + + D
Sbjct: 383 HIINNY--NENNDNNENNHNNNNNNNNNNNNSYD 414
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 224 (83.9 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 69/252 (27%), Positives = 122/252 (48%)
Query: 211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSF 270
D + ++ K+ K+ TK+ R +S + + E + K KYS + K F
Sbjct: 14 DDPVKNFEKWKKKYAKTKTKVKRSQKSKVKKRDWEVERENIKKLVDKYSEINPKEAVK-F 72
Query: 271 KELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL 330
+ S ++ L + +P++IQ ++G+ + A ++GSGKTLA+L+PV++ L
Sbjct: 73 SDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECL 132
Query: 331 RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL 390
+E Q + G+ +I++PT ELA Q R + K F + +V GG K +
Sbjct: 133 YRE--QWTAMDGLGA---LIISPTRELAYQTFEVLRKVGK-NHEFSAGLVIGGKDLKDES 186
Query: 391 ENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E + +++I TPGR + + E +L +LDE D + D F L +++ +
Sbjct: 187 EKIHR-TNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRIL-DMGFADTLNAIVENL 244
Query: 450 PVTAQYLFVTAT 461
P + Q L +AT
Sbjct: 245 PKSRQTLLFSAT 256
Score = 118 (46.6 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 514 LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
L++K +L +S + K I+ C++V+ + + F R + VL H Q R
Sbjct: 298 LHQKVNMLYSFLRSHLQKKIIVF--FACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKR 355
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +F R A LF TD A+RG+DF V+ V+ FD P D + Y
Sbjct: 356 VEVYNDFV--RKTSAVLF--ATDIAARGLDFPAVNWVLQFDCPEDANTY 400
Score = 52 (23.4 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 31/152 (20%), Positives = 60/152 (39%)
Query: 158 RVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDY 217
R K V +K + N K + + +KT ++ ++ D +V E+I K + Y
Sbjct: 2 RDKKVKEKTNITDDPVKNFEKWKKKYAKTKTKVKRSQKSKVKKRDWEVERENIKKLVDKY 61
Query: 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQY-EPTDCPKQRHKYSADG-DFFSRK---SFKE 272
+ + K + ++ + QY +PT+ +Q ++ G D S K
Sbjct: 62 SEINPKEAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKT 121
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE 304
L ++E L R+ + + A+ P E
Sbjct: 122 LAFLIPVLECLYREQWTAMDGLGALIISPTRE 153
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 242 (90.2 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 61/194 (31%), Positives = 105/194 (54%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S + + + ++ + P+ IQ P +++GK + ++GSGKT +L+P+ +R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ Q +G+ R +IL+PT ELA Q + + L K R+ ++ GG + + Q
Sbjct: 158 LKTHSAQ------TGA-RALILSPTRELALQTMKFTKELGKF-TGLRTALILGGDKMEDQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L E D++IATPGR + + E L+L ++ +D +D LF + F LQ +I
Sbjct: 210 FAALHENPDIIIATPGRLVHVAVEMNLKLQSVE--YVDSIDWLF-EMGFAEQLQEIIGRL 266
Query: 450 PVTAQYLFVTATLP 463
P Q + +ATLP
Sbjct: 267 PGGHQTVLFSATLP 280
Score = 99 (39.9 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 37/134 (27%), Positives = 64/134 (47%)
Query: 491 GLEE-FLVDCSGDQESDKTPETAFL-----NKKSALLQLIEK--SPVSKTIVFCNKIVTC 542
GL E L+ D + ++ +T+F K + LL L+ P +T+VF + T
Sbjct: 290 GLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKAAVLLHLLRTVVRPQDQTVVF---VATK 346
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
E + + + V ++ALDQ R N+ +FT ++ L+ TD A+RG+
Sbjct: 347 HHAEYLSELLTTQG--VSCTHIYSALDQTARKINLAKFTHNKCSA----LIVTDLAARGL 400
Query: 603 DFAGVDHVVLFDFP 616
D +D+V+ + FP
Sbjct: 401 DIPLLDNVINYSFP 414
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 287 (106.1 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 102/369 (27%), Positives = 169/369 (45%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ + ++ +++ + RP+ +Q A P + E + + Q+GSGKT A+LLP++
Sbjct: 158 ESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 217
Query: 328 QR---------LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
+ LR + G P ++LAPT ELA Q+ R + R
Sbjct: 218 SQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRS-RVRPC 276
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D F
Sbjct: 277 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMGF 335
Query: 439 EVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 336 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR--------- 385
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFD 553
V + + + K L+K+S LL L+ + S T+VF V +K + L+ F
Sbjct: 386 --VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVF----VETKKGADALEDFL 439
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
E H Q R + +F + +S LV T A+RG+D + V HV+ F
Sbjct: 440 YHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVKHVINF 494
Query: 614 DFPRDPSEY 622
D P D EY
Sbjct: 495 DLPSDIEEY 503
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 255 (94.8 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 60/199 (30%), Positives = 108/199 (54%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K++ + G S ++ +LK+ + +P+ IQ+ A P ++ G+ I ++GSGKT+A+LLP+
Sbjct: 371 KTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMF 430
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + + L + P VI+ PT ELA Q+ C+ SK + R + V GG
Sbjct: 431 RHIMDQ--RALEEGEG--PIAVIMTPTRELALQITKECKKFSKT-LGLRVVCVYGGTGIS 485
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQS 444
Q+ L+ G ++++ TPGR + ++ ++ NLR +LDE D +F D FE +
Sbjct: 486 EQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMF-DMGFEPQVMR 544
Query: 445 LISSSPVTAQYLFVTATLP 463
++ + Q + +AT P
Sbjct: 545 IVDNVRPDRQTVMFSATFP 563
Score = 71 (30.1 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 36/152 (23%), Positives = 57/152 (37%)
Query: 515 NKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
NK LL+L+ I+F +K + +LK D L H +DQ R
Sbjct: 603 NKFLKLLELLGHYQEKGSVIIFVDKQ---EHADGLLK--DLMRASYPCLSLHGGIDQYDR 657
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXX 633
+ + +F K LV T A+RG+D + VV + P +Y
Sbjct: 658 DSIINDFKNGTCK----LLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAG 713
Query: 634 XXXXKAFIFVVGKQVSLAQRIMER-NRKGHPL 664
A+ F+ Q A I++ G+P+
Sbjct: 714 NKGF-AYTFITEDQARYAGDIIKALELSGNPI 744
Score = 59 (25.8 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 25/114 (21%), Positives = 51/114 (44%)
Query: 150 SFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAES 209
S SR + +R ++ ++ +KT N + + R S E +E + + D A++
Sbjct: 93 SRSRSRGRRSRSPSPSKN---RKTENRSRSKERTEGVEVSKEKKKEKDDKEEEKDKDAKN 149
Query: 210 IDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGD 263
D+N + R K + ++ ++ +I L+ E + KQ K+S + D
Sbjct: 150 FDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEM-KQGKKWSLEDD 202
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 281 (104.0 bits), Expect = 6.9e-22, P = 6.9e-22
Identities = 71/200 (35%), Positives = 109/200 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEI 466
+ P Q L +AT +I
Sbjct: 175 TKLPAKRQNLLFSATFSDDI 194
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 206 (77.6 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 59/193 (30%), Positives = 99/193 (51%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S ++ L+ + ++IQ ++GK + A ++GSGKTLA+L+PV++
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + LQ S G V+I++PT ELA Q R + K F + ++ GG K +
Sbjct: 131 LYR--LQWTSTDGLG---VLIISPTRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHE 184
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E + +++L+ TPGR + + E I NL+ +LDE D + D F + ++I +
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRIL-DMGFADTMNAIIEN 242
Query: 449 SPVTAQYLFVTAT 461
P Q L +AT
Sbjct: 243 LPKKRQTLLFSAT 255
Score = 135 (52.6 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 37/142 (26%), Positives = 64/142 (45%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K S L + K+IVF + +C++V+ + + F R + +L H Q R+
Sbjct: 300 KISVLFSFLRSHLTKKSIVFFS---SCKEVQYLYRVFCRLRPGISILALHGRQQQMRRME 356
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
EF R + A LF TD A+RG+DF V+ V+ FD P D + Y
Sbjct: 357 VYNEFV--RKRAAVLF--ATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKED 412
Query: 636 XXKAFIFVVGKQVSLAQRIMER 657
I + ++ + Q+++++
Sbjct: 413 GEALLILLPSEEQGMVQQLLQK 434
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 282 (104.3 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 88/358 (24%), Positives = 159/358 (44%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + + + + + +Q P ++ G+ + Q+GSGKT A+LLP++
Sbjct: 267 TFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILA 326
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + P +I+APT EL +Q+ R S G R +V+ GG +
Sbjct: 327 HMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFS-FGTCVRPVVIYGGTQLGH 385
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS- 447
+ + +G ++L ATPGR M +I + + L +R +LDE D + D F ++ LIS
Sbjct: 386 SIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRML-DMGFGPEMKKLISF 444
Query: 448 ---SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
S Q L +AT P + F + + ++ CS Q+
Sbjct: 445 PGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGA-------CSDVQQ 497
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ + +K+ L++++ +T+VF V +K + + F +E ++
Sbjct: 498 T--VLQVGQYSKREKLVEILRNIGEERTMVF----VETKKKADFIATFLCQE-KISTTSI 550
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +Q R + +F + LV T A+RG+D V HV+ FD P EY
Sbjct: 551 HGDREQREREQALGDFRCGKCP----VLVATSVAARGLDIENVQHVINFDLPSTIDEY 604
Score = 51 (23.0 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
Identities = 27/92 (29%), Positives = 32/92 (34%)
Query: 202 DNDVPAESIDKNISDYNSRSNKHE-KSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSA 260
D D AE I+ +IS K SG D R+ S D P +R S
Sbjct: 9 DEDWDAEIINPHISSLVPVFEKDRYSSGANGDTFNRASAS------SDIDGPSKRENTST 62
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPS 292
G F + K F G S E F R S
Sbjct: 63 MGGFGAGKGFGNRGFSSSRFEEGDSSGFWRES 94
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 266 (98.7 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 67/202 (33%), Positives = 111/202 (54%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L+ + P+ IQ A P + GKS + + +GSGKT ++L+P+I
Sbjct: 111 TFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIIS 170
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R + S +P ++LAPT EL QV + L K G+PF++ +V GG
Sbjct: 171 RCTTYHSEHPSDQRR-NPLAMVLAPTRELCVQVEDQAKMLGK-GLPFKTALVVGGDPMSG 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL----FNDEDFEVALQS 444
QL +Q+GV+++I TPGR + L+ + ++L N+ +LDEVD + F D+ ++ Q+
Sbjct: 229 QLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQI-FQA 287
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
L S P Q L +AT+ E+
Sbjct: 288 L--SQP---QVLLFSATISREV 304
Score = 61 (26.5 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 21/66 (31%), Positives = 27/66 (40%)
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
T V+ L H + R M F E + LV T RG+D V V++FD P
Sbjct: 381 TGVKALSIHGEKPMKERRDVMGSFLGG---EVPV-LVSTGVLGRGVDLLVVRQVIVFDMP 436
Query: 617 RDPSEY 622
EY
Sbjct: 437 STIKEY 442
>CGD|CAL0000117 [details] [associations]
symbol:DBP7 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000117 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
EMBL:AP006852 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 EMBL:AACQ01000156
RefSeq:XP_712474.1 RefSeq:XP_888745.1 ProteinModelPortal:Q59S50
STRING:Q59S50 GeneID:3645903 GeneID:3704147 KEGG:cal:CaO19.6902
KEGG:cal:CaO19_6902 KO:K14806 Uniprot:Q59S50
Length = 727
Score = 240 (89.5 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 97/335 (28%), Positives = 152/335 (45%)
Query: 149 SSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPA- 207
SS + K Q VK V R +K AL +GR K P E G +++ D
Sbjct: 17 SSVAASKNQNVK-VSGGRWKDRRKLQLAL--QGRTKKRQP------ETGVNLIPVDESKR 67
Query: 208 --ESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIH-NLQ----YEPTDCPKQRHKYSA 260
+S DK D N RS E G +G S+ N Q PT K+ +
Sbjct: 68 KRDSEDKVQLDSNKRSKFTESKGENGGKGDSYVSSLFTNNQPTSHLAPTSTTKELTYLPS 127
Query: 261 DGDFFSRKSFKELGCSDYM-IESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGK 318
+ +F LG ++ + I F+ P++IQ + P ++ ++ + Q+GSGK
Sbjct: 128 NAPMKDATNFSGLGLNEKLSIHLTDHLRFMHPTKIQQLVIPSLISTENDLFVKAQTGSGK 187
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
TLA++LP+ +L +E +++ SG +IL PT ELA+Q+ +L++C
Sbjct: 188 TLAFVLPIFHKLMRENKFKINRE-SGL-FAIILTPTRELATQIYGVLETLTRCHHWIVPG 245
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFN--D 435
+V GG ++K++ L++G ++L+ATPGR L L + LR +LDE D L
Sbjct: 246 IVIGGEKKKSEKARLRKGCNILVATPGRLADHLENTKTLDISQLRWLVLDEGDKLMELGF 305
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470
ED + + I S+ A LP N L
Sbjct: 306 EDTIAQITAKIDSNSKIADTAEKWQGLPSRRINML 340
Score = 96 (38.9 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ H +L Q+TR + ++ F + ++ L CTD ASRG+D V +V+ +D P
Sbjct: 484 IYKLHGSLSQQTRASTLQSFVKDNNSYNKI-LFCTDVASRGLDLPNVANVIEYDPP 538
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 285 (105.4 bits), Expect = 8.4e-22, P = 8.4e-22
Identities = 110/442 (24%), Positives = 207/442 (46%)
Query: 154 LKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSL-ENFREL--GEHIVDNDVPAESI 210
++ +R K DK+S +KT+ L++ + +T + E+ R+L E ++D +
Sbjct: 77 IERKRKKKEEDKQSEEARKTL--LEKHAEIMETQGVIDESERQLMEEEELLDKVTRGGGL 134
Query: 211 DKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRK-- 268
+++ ++ K+E+ I WR G I E + ++R S +GD
Sbjct: 135 -LAVAEL-TKGEKYEEP---IVTAWRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIG 189
Query: 269 SFKELGCSDYMIESLKRQN-FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
SF E+ ++E +++Q + P+ IQ P + G+ I +GSGKT+ ++LP++
Sbjct: 190 SFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQV----LSNCRSLSKCGVP-FRSMVVTG 382
++E++ L S P +I+ P+ ELA Q+ + +L K G+P R+ + G
Sbjct: 250 MFCLEQEMK-LPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIG 308
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q +++++G+ +++ATPGR ++ + I+ L R +LDE D + D FE +
Sbjct: 309 GVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRML-DMGFEDEI 367
Query: 443 QSLISSSPVTAQYLFVTATLP--VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+S+ Q L +AT+P ++ + K V P +V+ G +
Sbjct: 368 KSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKP---IVVNVGR--------------A 410
Query: 501 GDQESDKTPETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
G + E F+ ++ L++++E + K ++F K V V+NI + K
Sbjct: 411 GAASLNVLQELEFVRSENKLVRVLECLQKTSPKVLIFAEKKVD---VDNIYEYLLVKG-- 465
Query: 559 VRVLPFHAALDQETRLANMKEF 580
V V H DQ R A ++ F
Sbjct: 466 VEVASIHGGKDQSDRHAGIEAF 487
Score = 137 (53.3 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 41/109 (37%), Positives = 57/109 (52%)
Query: 515 NKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
NK +L+ ++K SP K ++F K V V+NI + K V V H DQ R
Sbjct: 428 NKLVRVLECLQKTSP--KVLIFAEKKVD---VDNIYEYLLVKG--VEVASIHGGKDQSDR 480
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
A ++ F R E + LV TD AS+G+DF G++HV+ FD P D Y
Sbjct: 481 HAGIEAF---RKNEKDV-LVATDVASKGLDFQGIEHVINFDMPEDIENY 525
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 250 (93.1 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 65/216 (30%), Positives = 107/216 (49%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P+ I
Sbjct: 254 SFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ S C+ K RS+ V GG
Sbjct: 314 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 367
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + LQEG ++++ TPGR + +K+ L + + DE D +F D FE ++S+ S
Sbjct: 368 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMF-DMGFEYQVRSIAS 426
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
Q L +AT +I ++ D +VV G
Sbjct: 427 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 462
Score = 89 (36.4 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
+L+E + ++F K ++ N LK+ D + +L H +DQ R + EF
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEDHN---LGLL--HGDMDQSERNKVISEF- 544
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
K+ LV TD A+RG+D + V+ +D RD
Sbjct: 545 ---KKKGIPILVATDVAARGLDIPSIKTVINYDVARD 578
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 250 (93.1 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 65/216 (30%), Positives = 107/216 (49%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
SF G + ++ +++ + +P+ IQ P + G+ I ++GSGKT A++ P+ I
Sbjct: 256 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLI 315
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q+EL+ P VI+ PT EL Q+ S C+ K RS+ V GG
Sbjct: 316 HIMDQKELE-----PGDGPIAVIVCPTRELCQQIHSECKRFGKA-YNLRSVAVYGGGSMW 369
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + LQEG ++++ TPGR + +K+ L + + DE D +F D FE ++S+ S
Sbjct: 370 EQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMF-DMGFEYQVRSIAS 428
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG 482
Q L +AT +I ++ D +VV G
Sbjct: 429 HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQG 464
Score = 89 (36.4 bits), Expect = 8.5e-22, Sum P(2) = 8.5e-22
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
+L+E + ++F K ++ N LK+ D + +L H +DQ R + EF
Sbjct: 493 RLVEFTSSGSVLLFVTKKANAEELANNLKQEDHN---LGLL--HGDMDQSERNKVISEF- 546
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
K+ LV TD A+RG+D + V+ +D RD
Sbjct: 547 ---KKKGIPILVATDVAARGLDIPSIKTVINYDVARD 580
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 206 (77.6 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 59/193 (30%), Positives = 99/193 (51%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S ++ L+ + ++IQ ++GK + A ++GSGKTLA+L+PV++
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + LQ S G V+I++PT ELA Q R + K F + ++ GG K +
Sbjct: 131 LYR--LQWTSTDGLG---VLIISPTRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHE 184
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E + +++L+ TPGR + + E I NL+ +LDE D + D F + ++I +
Sbjct: 185 AERINN-INILVCTPGRLLQHMDETICFHATNLQMLVLDEADRIL-DMGFADTMNAIIEN 242
Query: 449 SPVTAQYLFVTAT 461
P Q L +AT
Sbjct: 243 LPKKRQTLLFSAT 255
Score = 134 (52.2 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 38/142 (26%), Positives = 64/142 (45%)
Query: 516 KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLA 575
K S L + K+IVF + +C++V+ + + F R + +L H Q R+
Sbjct: 300 KISVLYSFLRSHLKKKSIVFFS---SCKEVQYLYRVFCRLRPGISILALHGRQQQMRRME 356
Query: 576 NMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYXXXXXXXXXXXXX 635
EF RS A LF TD A+RG+DF V+ V+ FD P D + Y
Sbjct: 357 VYNEFVRKRS--AVLF--ATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKED 412
Query: 636 XXKAFIFVVGKQVSLAQRIMER 657
I + ++ + Q+++++
Sbjct: 413 GEALLILLPSEEKGMVQQLLQK 434
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 299 (110.3 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 95/366 (25%), Positives = 166/366 (45%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E + M +++ + + + IQ P + +G + Q+GSGKT A+LLP++
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM 611
Query: 328 QRLRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGF 384
RL E L+ + G PR +IL PT EL Q+ + R + + + R V GG
Sbjct: 612 ARLIDEN--DLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRP--VYGGL 667
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+++G +++ T GR +EG ++L R +LDE D + + F + +
Sbjct: 668 AVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDT 727
Query: 445 LIS--SSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG----LEEFL 496
+++ S P Q L +AT P + + +++ + +I L+EF
Sbjct: 728 IVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLA--IDKIGAANKCVLQEF- 784
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
C ++ DK E ++ S + + KTIVF ++ + +IL
Sbjct: 785 EKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILS-----S 839
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+V + H A +Q R +++F SK L+ T A RG+D GVDHV+ +D P
Sbjct: 840 AQVPAITIHGAREQRERSEALRQFRNG-SKPV---LIATAVAERGLDIKGVDHVINYDMP 895
Query: 617 RDPSEY 622
+ +Y
Sbjct: 896 DNIDDY 901
Score = 37 (18.1 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 132 PVLRNNDCSIPSKK 145
P R+NDC P K+
Sbjct: 379 PGHRSNDCPEPKKE 392
Score = 37 (18.1 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 132 PVLRNNDCSIPSKK 145
P R+NDC P K+
Sbjct: 265 PGHRSNDCPEPKKE 278
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 299 (110.3 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 95/366 (25%), Positives = 166/366 (45%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E + M +++ + + + IQ P + +G + Q+GSGKT A+LLP++
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM 611
Query: 328 QRLRQEELQGLSKSTSGS--PRVVILAPTAELASQVLSNCRSLS-KCGVPFRSMVVTGGF 384
RL E L+ + G PR +IL PT EL Q+ + R + + + R V GG
Sbjct: 612 ARLIDEN--DLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRP--VYGGL 667
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+++G +++ T GR +EG ++L R +LDE D + + F + +
Sbjct: 668 AVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDT 727
Query: 445 LIS--SSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG----LEEFL 496
+++ S P Q L +AT P + + +++ + +I L+EF
Sbjct: 728 IVNYESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLA--IDKIGAANKCVLQEF- 784
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
C ++ DK E ++ S + + KTIVF ++ + +IL
Sbjct: 785 EKCDRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILS-----S 839
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+V + H A +Q R +++F SK L+ T A RG+D GVDHV+ +D P
Sbjct: 840 AQVPAITIHGAREQRERSEALRQFRNG-SKPV---LIATAVAERGLDIKGVDHVINYDMP 895
Query: 617 RDPSEY 622
+ +Y
Sbjct: 896 DNIDDY 901
Score = 37 (18.1 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 132 PVLRNNDCSIPSKK 145
P R+NDC P K+
Sbjct: 379 PGHRSNDCPEPKKE 392
Score = 37 (18.1 bits), Expect = 9.2e-22, Sum P(2) = 9.2e-22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 132 PVLRNNDCSIPSKK 145
P R+NDC P K+
Sbjct: 265 PGHRSNDCPEPKKE 278
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 286 (105.7 bits), Expect = 9.3e-22, P = 9.3e-22
Identities = 118/474 (24%), Positives = 207/474 (43%)
Query: 160 KAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNS 219
+A +D+R KK A K E + + E E V E+ D ++
Sbjct: 219 RAGMDRREQ--KK--QAAKHEKEMRDEIRKKDGIVEKPEEAAAQRVREEAAD-TYDSFDM 273
Query: 220 RSNKH--EKSGTKI-DRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCS 276
R ++H +K ++ +R WR N+ Y+ + P+ +S++E +
Sbjct: 274 RVDRHWSDKRLEEMTERDWRIFREDFNISYKGSRIPRPM------------RSWEESKLT 321
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
++++++R + +PS IQ A P ++ + I ++GSGKT A++LP++ + +
Sbjct: 322 SELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPM 381
Query: 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG 396
T G P V++APT ELA Q+ + + FR + GG + Q + +G
Sbjct: 382 SEENETEG-PYAVVMAPTRELAQQIEEETVKFAHY-LGFRVTSIVGGQSIEEQGLKITQG 439
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYL 456
+++IATPGR + ++ L +LDE D + D FE + ++ + P +
Sbjct: 440 CEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMI-DMGFEPQVAGVLDAMPSSN--- 495
Query: 457 FVTATLPVEI-YNKLVEVFPDCKVVMGPGMHRISPG-LEEFLVDCSGD--QESDKTPETA 512
E+ K+ M PG+ R++ L +V G + +D +
Sbjct: 496 LKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHV 555
Query: 513 FLNKKSA----LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ K+S L +L+++ IVF N C ++I K D+ RV L H
Sbjct: 556 IMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNC---DSIAKNLDKAGYRVTTL--HGGK 610
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
QE R +++ F R+K + LV TD RGID V HV+ +D P+ Y
Sbjct: 611 SQEQREISLEGF---RAKRYNV-LVATDVVGRGIDIPDVAHVINYDMPKHIEMY 660
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 285 (105.4 bits), Expect = 9.3e-22, P = 9.3e-22
Identities = 103/370 (27%), Positives = 177/370 (47%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA-DQSGSGKTLAYLLPV 326
++F ++ + ++ +++ + RP+ +Q A P +++GK ++A Q+GSGKT A+LLP+
Sbjct: 175 ENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIP-IIKGKRDLMACAQTGSGKTAAFLLPI 233
Query: 327 IQRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
+ ++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 234 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRP 292
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D
Sbjct: 293 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMG 351
Query: 438 FEVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
FE ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 352 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR-------- 402
Query: 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRF 552
V + + + K L+K+S LL ++ + S T+VF V +K + L+ F
Sbjct: 403 ---VGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVF----VETKKGADSLEDF 455
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
E H Q R + +F + +S LV T A+RG+D + V HV+
Sbjct: 456 LYHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVRHVIN 510
Query: 613 FDFPRDPSEY 622
FD P D EY
Sbjct: 511 FDLPSDIEEY 520
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 285 (105.4 bits), Expect = 9.4e-22, P = 9.4e-22
Identities = 103/370 (27%), Positives = 177/370 (47%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA-DQSGSGKTLAYLLPV 326
++F ++ + ++ +++ + RP+ +Q A P +++GK ++A Q+GSGKT A+LLP+
Sbjct: 178 ENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIP-IIKGKRDLMACAQTGSGKTAAFLLPI 236
Query: 327 IQRLRQ----EELQGLSKSTS-GS----PRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
+ ++ E L+ + ++ G P ++LAPT ELA Q+ R S R
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRP 295
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
VV GG Q+ +L+ G +L+ATPGR + +++ G + L + +LDE D + D
Sbjct: 296 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML-DMG 354
Query: 438 FEVALQSLISSS---PVTAQY-LFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
FE ++ ++ P ++ + +AT P EI L F D + + G
Sbjct: 355 FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEI-QMLARDFLDEYIFLAVGR-------- 405
Query: 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRF 552
V + + + K L+K+S LL ++ + S T+VF V +K + L+ F
Sbjct: 406 ---VGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVF----VETKKGADSLEDF 458
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
E H Q R + +F + +S LV T A+RG+D + V HV+
Sbjct: 459 LYHEGYA-CTSIHGDRSQRDREEALHQFRSGKSP----ILVATAVAARGLDISNVRHVIN 513
Query: 613 FDFPRDPSEY 622
FD P D EY
Sbjct: 514 FDLPSDIEEY 523
WARNING: HSPs involving 601 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 675 635 0.00092 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 851
No. of states in DFA: 614 (65 KB)
Total size of DFA: 315 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.68u 0.09s 56.77t Elapsed: 00:00:05
Total cpu time: 56.77u 0.09s 56.86t Elapsed: 00:00:05
Start: Fri May 10 11:01:21 2013 End: Fri May 10 11:01:26 2013
WARNINGS ISSUED: 2