BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005837
(675 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297736840|emb|CBI26041.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/630 (64%), Positives = 473/630 (75%), Gaps = 56/630 (8%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNK-DPSQPTT 129
YSR ++T GA +LID++TGEK IVWGG DDD PPIP K +L +WN D + PT
Sbjct: 48 YSRRQMDTPGAYQLIDDETGEKFIVWGGIDDD----PPIPSKDVL---SWNPVDNNTPTP 100
Query: 130 S---------APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE 180
S A ++ + KGV SF RLKAQRVKA+
Sbjct: 101 SKDGHAGIEPAAAVKKDVFPKAQTKGVTGSFGRLKAQRVKAL------------------ 142
Query: 181 GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID-------- 232
TT + + REL E+ + +D + S+ K +S KI
Sbjct: 143 -----TTKTSKAKRELNEYKIHSDKTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPR 197
Query: 233 ------RGWRSGGSIHNLQYEPTDCPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLK 284
+GW G ++ N ++E T+ PK+R K + AD DFFS KSF++LGCSDYMIESL+
Sbjct: 198 VSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLR 257
Query: 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344
Q F+RPS IQAMAF V+EGKSCI+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G
Sbjct: 258 GQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAG 317
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
P+VVIL PTAELASQVLSNCRS+SK G PFRSM TGGFRQ+TQLENLQ+ +DVLIATP
Sbjct: 318 CPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATP 377
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
GRFMFLIKEG LQL NLRCA+LDEVDIL NDEDFE+ALQ+LI+SSPVT QYLFVTATLPV
Sbjct: 378 GRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQTLINSSPVTMQYLFVTATLPV 437
Query: 465 EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524
IYNKLVEVFPDC+V+MGPGMHRIS LEE LVDCSGD ++KTPE+AFLNKKSALLQL+
Sbjct: 438 GIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQLV 497
Query: 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584
E SPVS+TIVFCNKI TCRKVEN+LK FDRK R+RVL FHAAL QE+RLAN+KEF S
Sbjct: 498 EGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLAFHAALTQESRLANLKEFLNSH 557
Query: 585 SKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644
S+ LFLVCTDRASRGIDFA VDHVVLFDFPRDPSEYVRRVGRTARGAGG GKAF++VV
Sbjct: 558 SEGVSLFLVCTDRASRGIDFAKVDHVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVYVV 617
Query: 645 GKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
GKQVSLA+RI+ERN+KGHPLH+VPSA+ELM
Sbjct: 618 GKQVSLARRIIERNKKGHPLHNVPSAYELM 647
>gi|225432238|ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis
vinifera]
Length = 707
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/666 (62%), Positives = 486/666 (72%), Gaps = 69/666 (10%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNK-DPSQPTT 129
YSR ++T GA +LID++TGEK IVWGG DDD PPIP K +L +WN D + PT
Sbjct: 48 YSRRQMDTPGAYQLIDDETGEKFIVWGGIDDD----PPIPSKDVL---SWNPVDNNTPTP 100
Query: 130 S---------APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTV----NA 176
S A ++ + KGV SF RLKAQRVKA+ K S ++ N
Sbjct: 101 SKDGHAGIEPAAAVKKDVFPKAQTKGVTGSFGRLKAQRVKALTTKTSKAKRELNECDDNE 160
Query: 177 LKQEG---RLSKTTPSLENF--------------------RELGE------HIVDNDVPA 207
L+ EG R S + S F RE+ + I D
Sbjct: 161 LEVEGAPSRRSIGSHSELEFMDEKKKLLIHGGNASRAFRRREIKDVIQTTGEIKDKIHSD 220
Query: 208 ESIDKNISDYNSRS---NKHEKSGTKID--------------RGWRSGGSIHNLQYEPTD 250
+++ ++I ++ K +S KI +GW G ++ N ++E T+
Sbjct: 221 KTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPRVSTANLQGWGYGETMRNFEFETTN 280
Query: 251 CPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
PK+R K + AD DFFS KSF++LGCSDYMIESL+ Q F+RPS IQAMAF V+EGKSC
Sbjct: 281 IPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVRPSHIQAMAFATVMEGKSC 340
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368
I+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G P+VVIL PTAELASQVLSNCRS+
Sbjct: 341 IIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPQVVILVPTAELASQVLSNCRSI 400
Query: 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
SK G PFRSM TGGFRQ+TQLENLQ+ +DVLIATPGRFMFLIKEG LQL NLRCA+LDE
Sbjct: 401 SKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLDE 460
Query: 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI 488
VDIL NDEDFE+ALQ+LI+SSPVT QYLFVTATLPV IYNKLVEVFPDC+V+MGPGMHRI
Sbjct: 461 VDILLNDEDFELALQTLINSSPVTMQYLFVTATLPVGIYNKLVEVFPDCEVIMGPGMHRI 520
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
S LEE LVDCSGD ++KTPE+AFLNKKSALLQL+E SPVS+TIVFCNKI TCRKVEN+
Sbjct: 521 SSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENV 580
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
LK FDRK R+RVL FHAAL QE+RLAN+KEF S S+ LFLVCTDRASRGIDFA VD
Sbjct: 581 LKHFDRKGVRLRVLAFHAALTQESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKVD 640
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
HVVLFDFPRDPSEYVRRVGRTARGAGG GKAF++VVGKQVSLA+RI+ERN+KGHPLH+VP
Sbjct: 641 HVVLFDFPRDPSEYVRRVGRTARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPLHNVP 700
Query: 669 SAFELM 674
SA+ELM
Sbjct: 701 SAYELM 706
>gi|147854298|emb|CAN83429.1| hypothetical protein VITISV_034872 [Vitis vinifera]
Length = 563
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/471 (73%), Positives = 392/471 (83%), Gaps = 29/471 (6%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLKRQNFLR 290
+GW G ++ N ++E T+ PK+R K + AD DFFS KSF++LGCSDYMIESL+ Q F+R
Sbjct: 92 QGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVR 151
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
PS IQAMAF V+EGKSCI+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G PRVVI
Sbjct: 152 PSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPRVVI 211
Query: 351 LAPTAELASQ---------------------------VLSNCRSLSKCGVPFRSMVVTGG 383
L PTAELASQ VLSNCRS+SK G PFRSM TGG
Sbjct: 212 LVPTAELASQMRFCYVCGSFNANNVVQEHKDKTIHTKVLSNCRSISKFGAPFRSMAATGG 271
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
FRQ+TQLENLQ+ +DVLIATPGRFMFLIKEG LQL NLRCA+LDEVDIL NDEDFE+ALQ
Sbjct: 272 FRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQ 331
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+LI+SSPVT QYLFVTATLPV IYNKLVEVFPDC+V+MGPGMHRIS LEE LVDCSGD
Sbjct: 332 TLINSSPVTMQYLFVTATLPVGIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDD 391
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
++KTPE+AFLNKKSALLQL+E SPVS+TIVFCNKI TCRKVEN+LK FDRK R+RVL
Sbjct: 392 GTEKTPESAFLNKKSALLQLVEGSPVSRTIVFCNKIETCRKVENVLKHFDRKGVRLRVLA 451
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
FHAAL QE+RLAN+KEF S S+ LFLVCTDRASRGIDFA DHVVLFDFPRDPSEYV
Sbjct: 452 FHAALTQESRLANLKEFLNSHSEGVSLFLVCTDRASRGIDFAKXDHVVLFDFPRDPSEYV 511
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
RRVGRTARGAGG GKAF++VVGKQVSLA+RI+ERN+KGHPLH+VPSA+ELM
Sbjct: 512 RRVGRTARGAGGKGKAFVYVVGKQVSLARRIIERNKKGHPLHNVPSAYELM 562
>gi|449459868|ref|XP_004147668.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 648
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/630 (59%), Positives = 452/630 (71%), Gaps = 62/630 (9%)
Query: 69 GGYSRTPLETAGACELIDND----TGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDP 124
GY+R +++AG +L D D T + + + G + D D
Sbjct: 54 AGYARKSVDSAGVYQLTDEDDFTVTSSEELRYDGDETVDDED------------------ 95
Query: 125 SQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRL- 183
T +R K+ I SF RLK Q+VKA+V K G +T L+ + R
Sbjct: 96 ----TKTSGMR--------KRISIGSFGRLKTQKVKAIVTK----GSRTNEELRNDVRKP 139
Query: 184 --SKTTPSLENF-----RELGE--------HIVDNDVPAESIDKNISDYN----SRSNKH 224
+P + ++ + +GE ++ N P+E D+ SRS
Sbjct: 140 TPEDGSPHISDYPRSKVKTMGEKKRINALRNVEKNSRPSELQDRERHQTTAPNLSRSEPL 199
Query: 225 EKSGT-KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESL 283
SG+ RGW S G + +YEPT+ +Q K S++ F+SRKSFKELGCS+YMIESL
Sbjct: 200 VSSGSGSYFRGWGSRGP-YGSEYEPTEHKQQ--KISSEKGFYSRKSFKELGCSEYMIESL 256
Query: 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343
+RQNF+RPSQIQA AF V++GKSCI++DQSGSGKTLAYL+P+IQRLRQEEL+G KS+S
Sbjct: 257 RRQNFVRPSQIQAKAFSSVIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSS 316
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
SP++VI+ PTAELASQVLSNCRS+SK GVPFRSMVVTGGFRQKTQL+NLQEGVDVLIAT
Sbjct: 317 KSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIAT 376
Query: 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
PGR M LI EG L L NLRCA++DEVDILFNDEDFEVAL+SL+ S+PV QYLFVTATLP
Sbjct: 377 PGRLMLLINEGFLLLSNLRCAVMDEVDILFNDEDFEVALRSLMKSAPVNTQYLFVTATLP 436
Query: 464 VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
V+IYN LVE FPDC+V+MGPG+HRISP LEE LVDCSG+ E KTP+ AF NKK ALLQ+
Sbjct: 437 VDIYNTLVENFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQHKTPDAAFSNKKDALLQI 496
Query: 524 IEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTS 583
E +PV KTIVFCNKI TCRKVEN L+RFD+K +R++V PFHAAL +E+RLANM+ FT S
Sbjct: 497 AEGTPVLKTIVFCNKIETCRKVENALQRFDKKGSRLQVFPFHAALARESRLANMEAFTNS 556
Query: 584 RSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFV 643
S + FLVCTDRASRGIDF VDHV+LFDFPRDPSEYVRRVGRTARGA G GKAFIFV
Sbjct: 557 HSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFV 616
Query: 644 VGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
VGKQVSLA+RI+ERNRKGHPLHDVPSA+EL
Sbjct: 617 VGKQVSLARRIIERNRKGHPLHDVPSAYEL 646
>gi|255556636|ref|XP_002519352.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223541667|gb|EEF43216.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 594
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/545 (64%), Positives = 427/545 (78%), Gaps = 21/545 (3%)
Query: 148 ISSFSRLKAQRVKAVVDKRSAMGKKTVNAL----KQEGRLSKTTPSLENFRELGEHIVDN 203
+ +F +LKAQ++K ++ + +M +K + + + + S N +
Sbjct: 52 MGAFGKLKAQKLKVLMRRAESMKQKVTKNVHVPPRADPHFHDSVISDTNSNSTASVTQGS 111
Query: 204 DVPAESI----DKNISDYNS--RSNKHEKSGTKIDRGWRSGGSIHNLQYEP--------T 249
AE+I K+I ++S + +KH+ S R G + Y T
Sbjct: 112 ---AETIVTRAGKDIKSFSSSVKHDKHQMSDHVFRRSGAEGSAPATSSYFSGWANVGLTT 168
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
++HK+SA+ DFFSRKSF++LGCS++MIESLK Q FLRPS IQAM+F PV+EGKSC+
Sbjct: 169 KSIHRQHKFSAENDFFSRKSFRDLGCSEFMIESLKGQGFLRPSPIQAMSFTPVIEGKSCV 228
Query: 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
+ADQSGSGKTLAYL+P+IQRLR EELQGL +S SP+++I+ PTAELASQVL NCRS+S
Sbjct: 229 IADQSGSGKTLAYLVPIIQRLRLEELQGLGESFPQSPQILIMVPTAELASQVLYNCRSMS 288
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
K GVPFRSM VTGGF Q+TQLENL++GV+VLIATPGRFMFL+KEG L+L NL+CA+LDEV
Sbjct: 289 KFGVPFRSMAVTGGFSQRTQLENLEQGVNVLIATPGRFMFLVKEGFLKLSNLKCAVLDEV 348
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS 489
D+LFNDE+FEVAL+SL+++SPV +QYLFVTATLPV +YNKL+E+FPDC VVMGPGMHR S
Sbjct: 349 DVLFNDEEFEVALKSLMNASPVRSQYLFVTATLPVGVYNKLIEIFPDCGVVMGPGMHRTS 408
Query: 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENIL 549
LEE LVDCSG+ +D+TPETAFLNKKSALLQ++E+ PV K+IVFCNKI TCRKVEN+L
Sbjct: 409 ARLEEVLVDCSGEIGADRTPETAFLNKKSALLQVVEQRPVLKSIVFCNKIETCRKVENVL 468
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
KRFDRK TR+RVLPFH+A+ QE+RLANMKEFT S + LFLVCTDRASRGIDF GVDH
Sbjct: 469 KRFDRKGTRIRVLPFHSAMAQESRLANMKEFTKPHSGKYSLFLVCTDRASRGIDFVGVDH 528
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
V+LFDFPRDPSEYVRRVGRTARGA G GKAFIFVVGKQVSLAQ+IMERN+KGHPLHDVPS
Sbjct: 529 VILFDFPRDPSEYVRRVGRTARGANGKGKAFIFVVGKQVSLAQKIMERNQKGHPLHDVPS 588
Query: 670 AFELM 674
A+ELM
Sbjct: 589 AYELM 593
>gi|297829242|ref|XP_002882503.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata]
gi|297328343|gb|EFH58762.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata]
Length = 782
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/460 (72%), Positives = 393/460 (85%), Gaps = 4/460 (0%)
Query: 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQY--EPTDCPKQRHKYSA--DGDFFSRKSFKEL 273
N R H D R G ++ Y + D + R+K +A + FFSRK+F E+
Sbjct: 321 NERGGSHSSYSKGSDTNSRGWGDRRSVVYARDMDDWRENRNKTNATRETGFFSRKTFAEI 380
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
GCS+ M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+P IQRLR+E
Sbjct: 381 GCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPAIQRLREE 440
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
ELQG SKS+SG PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL
Sbjct: 441 ELQGQSKSSSGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENL 500
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
++GVDVLIATPGRFM+L+ EGIL L NLRCAILDEVDILF D++FE ALQSLI+SSPVTA
Sbjct: 501 EQGVDVLIATPGRFMYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQSLINSSPVTA 560
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
QYLFVTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF
Sbjct: 561 QYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAF 620
Query: 514 LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETR 573
NKK+ALLQ+IE++PVSKTI+FCNKI TCRKVENI KR DRKE ++ VLPFHAAL QE+R
Sbjct: 621 QNKKTALLQIIEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESR 680
Query: 574 LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGA 633
L NM+EFT+S+ +E LFLVCTDRASRGIDF+GVDHVVLFDFPRDPSEYVRRVGRTARGA
Sbjct: 681 LTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGA 740
Query: 634 GGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
G GKAFIFVVGKQV+LA+RI+ERN+KGHP+HDVP+A+E
Sbjct: 741 RGEGKAFIFVVGKQVALARRIIERNQKGHPVHDVPNAYEF 780
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 56 VVLVRASGGDGG---GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPK 112
+V + +GG GG G+ R PLET+ + D+ T E ++ D +++ PP P
Sbjct: 24 IVRLFRNGGSGGVVARAGFVRRPLETSSS---YDDSTDEGFVIISSVDKENEFSPP-PTP 79
Query: 113 HLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDK 165
LL S PS+ T RN S GV +SF RLKAQ+VKA+V K
Sbjct: 80 DLLSSI-----PSESTR-----RNGSRS----GGVTASFGRLKAQKVKALVGK 118
>gi|15231353|ref|NP_187354.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
gi|108861898|sp|Q8GUG7.2|RH50_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|6729005|gb|AAF27002.1|AC016827_13 putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|15081735|gb|AAK82522.1| AT3g06980/F17A9_13 [Arabidopsis thaliana]
gi|16519315|emb|CAC82719.1| DEAD-box RNA Helicase [Arabidopsis thaliana]
gi|21360513|gb|AAM47372.1| AT3g06980/F17A9_13 [Arabidopsis thaliana]
gi|332640962|gb|AEE74483.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
Length = 781
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/456 (72%), Positives = 389/456 (85%), Gaps = 4/456 (0%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DVLIATPGRF +L+ EGIL L NLRCAILDEVDILF D++FE ALQ+LI+SSPVTAQYLF
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
VTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF NKK
Sbjct: 564 VTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKK 623
Query: 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577
+ALLQ++E++PVSKTI+FCNKI TCRKVENI KR DRKE ++ VLPFHAAL QE+RL NM
Sbjct: 624 TALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNM 683
Query: 578 KEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTG 637
+EFT+S+ +E LFLVCTDRASRGIDF+GVDHVVLFDFPRDPSEYVRRVGRTARGA G G
Sbjct: 684 QEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKG 743
Query: 638 KAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
KAFIFVVGKQV LA+RI+ERN KGHP+HDVP+A+E
Sbjct: 744 KAFIFVVGKQVGLARRIIERNEKGHPVHDVPNAYEF 779
>gi|224107012|ref|XP_002314343.1| predicted protein [Populus trichocarpa]
gi|222863383|gb|EEF00514.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/413 (79%), Positives = 375/413 (90%), Gaps = 1/413 (0%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+ DFFSRKSF++LGC+D+MIESLK Q F+RPS IQAMAF PV++GKSCI+ADQSGSGKT+
Sbjct: 10 ENDFFSRKSFRDLGCTDFMIESLKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTM 69
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
AYL+P+IQRLRQEELQGL +S+S SPRV+IL PTAELASQVL+NCRS+SK GVPFRSMVV
Sbjct: 70 AYLIPLIQRLRQEELQGLGQSSSQSPRVLILVPTAELASQVLNNCRSMSKHGVPFRSMVV 129
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
TGGFRQ+TQLENL++GVDVLIATPGRFMFLIKEG L+L NL+CA+LDE+DILFNDE+FE
Sbjct: 130 TGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLKLQNLKCAVLDEIDILFNDENFEA 189
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+LQ LI+SSPVT QYLFVTATLPV++ NKL+EVFPDC+V+MGPG+HR S LEE LVDCS
Sbjct: 190 SLQGLINSSPVTTQYLFVTATLPVDVCNKLIEVFPDCEVIMGPGVHRTSARLEEILVDCS 249
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
G+ E++KTPETAFLNKKSALLQL+E+SPVSKTI+FCNKI TCRKVEN LKR DRK T VR
Sbjct: 250 GEIEAEKTPETAFLNKKSALLQLVEQSPVSKTIIFCNKIETCRKVENALKRTDRKGTLVR 309
Query: 561 VLPFHAALDQETRLANMKEFTT-SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
VLPFHAAL QE+RLANMKEF SR KE LFLVCTDRASRGIDF+GVDHVVLFDFPRDP
Sbjct: 310 VLPFHAALAQESRLANMKEFMNPSRPKEESLFLVCTDRASRGIDFSGVDHVVLFDFPRDP 369
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
SEYVRRVGRTARGA G GKAFIF VGKQV LA++I++RN KGHPLHDVP A+E
Sbjct: 370 SEYVRRVGRTARGARGNGKAFIFAVGKQVFLARKIIQRNEKGHPLHDVPFAYE 422
>gi|27311829|gb|AAO00880.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 781
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/456 (72%), Positives = 388/456 (85%), Gaps = 4/456 (0%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DVLIATPGRF +L+ EGIL L NLR AILDEVDILF D++FE ALQ+LI+SSPVTAQYLF
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRFAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
VTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF NKK
Sbjct: 564 VTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKK 623
Query: 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577
+ALLQ++E++PVSKTI+FCNKI TCRKVENI KR DRKE ++ VLPFHAAL QE+RL NM
Sbjct: 624 TALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLTNM 683
Query: 578 KEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTG 637
+EFT+S+ +E LFLVCTDRASRGIDF+GVDHVVLFDFPRDPSEYVRRVGRTARGA G G
Sbjct: 684 QEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKG 743
Query: 638 KAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
KAFIFVVGKQV LA+RI+ERN KGHP+HDVP+A+E
Sbjct: 744 KAFIFVVGKQVGLARRIIERNEKGHPVHDVPNAYEF 779
>gi|413957214|gb|AFW89863.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 649
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/643 (53%), Positives = 450/643 (69%), Gaps = 54/643 (8%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQG--------------------IGNFGRFKAQKIKSLVTRSAHRKR 128
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 129 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 188
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 189 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 245
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 246 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 305
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 306 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 365
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E FE L L
Sbjct: 366 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGFEQVLHQL 425
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
I+ +PVT QYLFVTATLP++IYNK+VE FPDC+V+MGPG+HR S LEE LVDCSGD
Sbjct: 426 ITVAPVTTQYLFVTATLPLDIYNKVVETFPDCEVIMGPGVHRTSSRLEEILVDCSGDDNE 485
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+K PETAF NKK+ALL++IE+SPV KTIVFCNKI TCRKVEN L+R DRK ++++VLPFH
Sbjct: 486 EKNPETAFSNKKTALLKIIEESPVRKTIVFCNKIETCRKVENALRRVDRKASQIKVLPFH 545
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
AALDQ R+AN+KEF ++ ++ +FLVCTDRASRGIDFA V+HVVLFD+PRDPSEYVRR
Sbjct: 546 AALDQAQRIANIKEFLNKQTADS-MFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRR 604
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
VGRTARGA G GKAF+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 605 VGRTARGASGNGKAFVFAVGKQVSLARRVMERNMKGHPLHDVP 647
>gi|226502877|ref|NP_001146459.1| uncharacterized protein LOC100280046 [Zea mays]
gi|219887353|gb|ACL54051.1| unknown [Zea mays]
gi|413957213|gb|AFW89862.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 655
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/643 (53%), Positives = 450/643 (69%), Gaps = 48/643 (7%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQGVGGG--------------TGIGNFGRFKAQKIKSLVTRSAHRKR 134
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 135 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 194
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 195 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 251
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 252 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 311
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 312 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 371
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E FE L L
Sbjct: 372 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGFEQVLHQL 431
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
I+ +PVT QYLFVTATLP++IYNK+VE FPDC+V+MGPG+HR S LEE LVDCSGD
Sbjct: 432 ITVAPVTTQYLFVTATLPLDIYNKVVETFPDCEVIMGPGVHRTSSRLEEILVDCSGDDNE 491
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+K PETAF NKK+ALL++IE+SPV KTIVFCNKI TCRKVEN L+R DRK ++++VLPFH
Sbjct: 492 EKNPETAFSNKKTALLKIIEESPVRKTIVFCNKIETCRKVENALRRVDRKASQIKVLPFH 551
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
AALDQ R+AN+KEF ++ ++ +FLVCTDRASRGIDFA V+HVVLFD+PRDPSEYVRR
Sbjct: 552 AALDQAQRIANIKEFLNKQTADS-MFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRR 610
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
VGRTARGA G GKAF+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 611 VGRTARGASGNGKAFVFAVGKQVSLARRVMERNMKGHPLHDVP 653
>gi|356516407|ref|XP_003526886.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 530
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/527 (64%), Positives = 399/527 (75%), Gaps = 43/527 (8%)
Query: 148 ISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPA 207
SSF RLKAQ+VK ++ R + S P H+ D+D
Sbjct: 44 FSSFGRLKAQKVKTLLVHRRGKDQ------------SHRRPV---------HLEDDD--- 79
Query: 208 ESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR 267
D + RS + G + D P P + K +D FFS
Sbjct: 80 ---DYVATPRPRRSQSRTRGGERWD-------------MIPNYTPPAQSKSVSDTKFFSL 123
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFKE+GCS+YMIESL++ F RPS +QAMAF PV+ GK+C++ADQSGSGKT AYL P+I
Sbjct: 124 KSFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQSGSGKTFAYLAPII 183
Query: 328 QRLRQEELQGL---SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
QRLRQ+EL+G+ S S + SPRV++LAPTAELASQVL NCRSLSK GVPF+SMVVTGGF
Sbjct: 184 QRLRQQELEGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGF 243
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
RQKTQLENLQ+GVDVLIATPGRF+FLI +G L L NLRCA+LDEVDILF DEDFEVALQS
Sbjct: 244 RQKTQLENLQQGVDVLIATPGRFLFLINQGFLHLTNLRCAVLDEVDILFGDEDFEVALQS 303
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
LI+SSPV QYLFVTATLP +Y KLVEVFPDC+++MGPGMHRIS L+E +VDCSG+
Sbjct: 304 LINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDG 363
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+KTP+TAFLNKK+ALLQL+E+SPV +TIVFCNKI TCRKVEN+LKRFDRK V+VLPF
Sbjct: 364 QEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENLLKRFDRKGNCVQVLPF 423
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
HAA+ QE+RLA+M+EFT S SK F+VCTDRASRGIDFA VDHV+LFDFPRDPSEYVR
Sbjct: 424 HAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFARVDHVILFDFPRDPSEYVR 483
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
RVGRTARGA G GKAFIFVVGKQVSLA++IMERN+KGHPLHDVPSA+
Sbjct: 484 RVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY 530
>gi|356507351|ref|XP_003522431.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 528
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/416 (76%), Positives = 365/416 (87%), Gaps = 1/416 (0%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + D FFS KSFKE+GCS+YMIESL++ RPS +QAMAF PV+ GK+C++ADQSGS
Sbjct: 113 KSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGS 172
Query: 317 GKTLAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
GKTLAYL P+IQ LR EEL+G S KS+S +PRV++LAPTAELASQVL NCRSLSK GVPF
Sbjct: 173 GKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPF 232
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
+SMVVTGGFRQKTQLENLQ+GVDVLIATPGRF+FLI EG LQL NLRCAILDEVDILF D
Sbjct: 233 KSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGD 292
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
EDFEVALQSLI+SSPV QYLFVTATLP +Y KLVEVFPDC+++MGPGMHRIS L+E
Sbjct: 293 EDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEI 352
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+VDCSG+ +KTP+TAFLNKK+ALLQL+E++PV +TIVFCNKI TCRKVEN+LKRFDRK
Sbjct: 353 IVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNKIETCRKVENLLKRFDRK 412
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
V+VLPFHAA+ QE+RLA+M+EFT S SK F+VCTDRASRGIDF VDHV+LFDF
Sbjct: 413 GNHVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFTRVDHVILFDF 472
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
PRDPSEYVRRVGRTARGA G GKAFIFVVGKQVSLA++IMERN+KGHPLHDVPSA+
Sbjct: 473 PRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY 528
>gi|47077008|dbj|BAD18438.1| unnamed protein product [Homo sapiens]
Length = 528
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/416 (76%), Positives = 365/416 (87%), Gaps = 1/416 (0%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + D FFS KSFKE+GCS+YMIESL++ RPS +QAMAF PV+ GK+C++ADQSGS
Sbjct: 113 KSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGS 172
Query: 317 GKTLAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
GKTLAYL P+IQ LR EEL+G S KS+S +PRV++LAPTAELASQVL NCRSLSK GVPF
Sbjct: 173 GKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPF 232
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
+SMVVTGGFRQKTQLENLQ+GVDVLIATPGRF+FLI EG LQL NLRCAILDEVDILF D
Sbjct: 233 KSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGD 292
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
EDFEVALQSLI+SSPV QYLFVTATLP +Y KLVEVFPDC+++MGPGMHRIS L+E
Sbjct: 293 EDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEI 352
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+VDCSG+ +KTP+TAFLNKK+ALLQL+E++PV +TIVFCNKI TCRKVEN+LKRFDRK
Sbjct: 353 IVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNKIETCRKVENLLKRFDRK 412
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
V+VLPFHAA+ QE+RLA+M+EFT S SK F+VCTDRASRGIDF VDHV+LFDF
Sbjct: 413 GNHVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFTRVDHVILFDF 472
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
PRDPSEYVRRVGRTARGA G GKAFIFVVGKQVSLA++IMERN+KGHPLHDVPSA+
Sbjct: 473 PRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY 528
>gi|115450203|ref|NP_001048702.1| Os03g0108600 [Oryza sativa Japonica Group]
gi|113547173|dbj|BAF10616.1| Os03g0108600, partial [Oryza sativa Japonica Group]
Length = 653
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/608 (55%), Positives = 434/608 (71%), Gaps = 40/608 (6%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 70 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 119
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE--- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 120 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESDE 168
Query: 192 -----------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
N R+ D A S++ + Y ++ + G++ G + G+
Sbjct: 169 DGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWGN 227
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 228 ISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYR 284
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQ
Sbjct: 285 PVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQ 344
Query: 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
VL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL N
Sbjct: 345 VLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNN 404
Query: 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
LRC +LDEVDIL+ +E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++
Sbjct: 405 LRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELI 464
Query: 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIV 540
MGPG+HR S LEE LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNKI
Sbjct: 465 MGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIE 524
Query: 541 TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASR 600
TCRKVEN L+R DRK ++++VLPFHAALDQ+ R+AN+KEF ++ ++ +FLVCTDRASR
Sbjct: 525 TCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADS-MFLVCTDRASR 583
Query: 601 GIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK 660
GIDFA V+HVVLFD+PRDPSEYVRRVGRTARGA G GKAF+F VGKQVSLA+R+MERN K
Sbjct: 584 GIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIK 643
Query: 661 GHPLHDVP 668
GHPLHDVP
Sbjct: 644 GHPLHDVP 651
>gi|143456346|sp|Q0DVX2.2|RH50_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|108705771|gb|ABF93566.1| DEAD/DEAH box helicase, putative, expressed [Oryza sativa Japonica
Group]
gi|215686822|dbj|BAG89672.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624050|gb|EEE58182.1| hypothetical protein OsJ_09113 [Oryza sativa Japonica Group]
Length = 641
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/608 (55%), Positives = 434/608 (71%), Gaps = 40/608 (6%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 58 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 107
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE--- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 108 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESDE 156
Query: 192 -----------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
N R+ D A S++ + Y ++ + G++ G + G+
Sbjct: 157 DGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWGN 215
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 216 ISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYR 272
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQ
Sbjct: 273 PVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQ 332
Query: 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
VL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL N
Sbjct: 333 VLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNN 392
Query: 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
LRC +LDEVDIL+ +E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++
Sbjct: 393 LRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELI 452
Query: 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIV 540
MGPG+HR S LEE LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNKI
Sbjct: 453 MGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIE 512
Query: 541 TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASR 600
TCRKVEN L+R DRK ++++VLPFHAALDQ+ R+AN+KEF ++ ++ +FLVCTDRASR
Sbjct: 513 TCRKVENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADS-MFLVCTDRASR 571
Query: 601 GIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK 660
GIDFA V+HVVLFD+PRDPSEYVRRVGRTARGA G GKAF+F VGKQVSLA+R+MERN K
Sbjct: 572 GIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIK 631
Query: 661 GHPLHDVP 668
GHPLHDVP
Sbjct: 632 GHPLHDVP 639
>gi|326514124|dbj|BAJ92212.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/629 (54%), Positives = 434/629 (68%), Gaps = 46/629 (7%)
Query: 64 GDGGGGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKD 123
G+ GG GY R ++T GA L+D TG+ VIVWGG DD D P +P +L ++
Sbjct: 46 GEDGGRGYERVAMDTPGAYRLVDRSTGKSVIVWGGVDDGED--PSVPSPAVLSRVTADRS 103
Query: 124 PSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRL 183
S+ + S GV SF RLKAQ+V+A + +++ LK+EG
Sbjct: 104 ASKGAANGG----------SSAGV-GSFGRLKAQKVQA-------LARRSAAQLKREGTS 145
Query: 184 SKTT-------PSLENFRELGEHIVDNDVP--AESIDKNISDYNSRSNKHEKSGTKIDRG 234
S+T+ PS ++ E VP A N ++R++ +S + R
Sbjct: 146 SRTSIAQRNEPPSADSDEEGNNSGRRKFVPDPARRAKPNGDSRDARTSA-VRSLNSVLRQ 204
Query: 235 WRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCSDYM 279
++ EP PK ++ K D FFSR+SFKE+GC D +
Sbjct: 205 YKGDDDSDFSDEEPASGPKVWGKVADVTSYRREDRKQKVPLDSGFFSRRSFKEIGCGDEI 264
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+ +L F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P++Q LR+EE G+
Sbjct: 265 LGALTTFGFPQPSHIQAMAYAPVLEGRSCIIADQSGSGKTLAYLCPIVQNLRKEEAMGIH 324
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
K + +PRVVIL PTAEL+SQVL NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DV
Sbjct: 325 KPSPRNPRVVILTPTAELSSQVLQNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDV 384
Query: 400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
LIATPGRF++L++EG +QL NLRCA+ DEVDILF++E FE L LI+ +PVT QYLFVT
Sbjct: 385 LIATPGRFLYLLQEGFVQLNNLRCAVFDEVDILFSEEGFEQVLHQLITIAPVTTQYLFVT 444
Query: 460 ATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
ATLP++IYNK+VE FPDC+V+MGP +HR S LEE LVDCSG+ +K PETAF NK++A
Sbjct: 445 ATLPLDIYNKVVETFPDCEVLMGPSVHRTSARLEEILVDCSGNDNDEKNPETAFSNKRTA 504
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
LL++IE+SPV KTIVFCNKI TCRKVEN+L R DRK T+++VLPFHAALDQ R+ANMKE
Sbjct: 505 LLKIIEESPVRKTIVFCNKIETCRKVENVLTRLDRKATQIKVLPFHAALDQAKRIANMKE 564
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639
F ++ ++ +FLVCTDRASRGIDF V+HVVLFD+PRDPSEYVRRVGRTARGA G GKA
Sbjct: 565 FLKKQTTDS-MFLVCTDRASRGIDFTNVNHVVLFDYPRDPSEYVRRVGRTARGASGDGKA 623
Query: 640 FIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
F+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 624 FVFAVGKQVSLARRVMERNLKGHPLHDVP 652
>gi|218191936|gb|EEC74363.1| hypothetical protein OsI_09674 [Oryza sativa Indica Group]
Length = 620
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/594 (56%), Positives = 432/594 (72%), Gaps = 33/594 (5%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 58 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 107
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E+
Sbjct: 108 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDES-D 155
Query: 195 ELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQ 254
E G + + A + K + ++ G++ G + G+I ++ + + Q
Sbjct: 156 EDGAYFERDR--ARNTGKTVDLETTKPR-----GSEATSGSKRWGNISDVTFGRQN---Q 205
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
R K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+ PV+EGKSCI+ DQS
Sbjct: 206 RQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQS 265
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
GSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQVL+NCRS+SK GVP
Sbjct: 266 GSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVP 325
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434
FRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL NLRC +LDEVDIL+
Sbjct: 326 FRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYG 385
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
+E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++MGPG+HR S LEE
Sbjct: 386 EESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEE 445
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNKI TCRKVEN L+R DR
Sbjct: 446 ILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKVENALRRVDR 505
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
K ++++VLPFHAALDQ+ R+AN+KEF ++ ++ +FLVCTDRASRGIDFA V+HVVLFD
Sbjct: 506 KASQIKVLPFHAALDQQQRIANIKEFLNKQTADS-MFLVCTDRASRGIDFANVNHVVLFD 564
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
+PRDPSEYVRRVGRTARGA G GKAF+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 565 YPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLHDVP 618
>gi|242042555|ref|XP_002468672.1| hypothetical protein SORBIDRAFT_01g050040 [Sorghum bicolor]
gi|241922526|gb|EER95670.1| hypothetical protein SORBIDRAFT_01g050040 [Sorghum bicolor]
Length = 656
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/631 (52%), Positives = 436/631 (69%), Gaps = 57/631 (9%)
Query: 70 GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTT 129
G+ + P++T GA L+D TG VIVWGGTDD + P P L + ++ SQ
Sbjct: 49 GFDKVPMDTPGAYRLVDRATGRSVIVWGGTDDGDEAAIP-SPAVLSRTRTTDRRSSQGVG 107
Query: 130 SAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQ----EGRLSK 185
+ +F RLKAQ++K++V + + +++ + E
Sbjct: 108 GGTGI--------------GNFGRLKAQKIKSLVTRSAHRKRESSSRSSTNRSGESSFDG 153
Query: 186 TTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKI-------------- 231
+ E++ E + + D++ A K SDY + + S T +
Sbjct: 154 SGDEEESYFERRKPVSDSEHRA----KLSSDYRNGRTRGAHSLTSVLGQYRGADDTGFPA 209
Query: 232 ------DRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFFSRKSFKELGCSD 277
+GW G++ ++ Y EP + P++ K D FFSR++FKE+GCSD
Sbjct: 210 SEATSGSKGW---GNVADVTYGRQNQKQREPLNFPQR--KGPLDSGFFSRRTFKEIGCSD 264
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
++ L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P+IQ LR EE+QG
Sbjct: 265 EILVVLRNFDFPRPSHIQAMAYGPILEGRSCVIADQSGSGKTLAYLCPIIQNLRSEEVQG 324
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
L KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFRQKTQLE+L + +
Sbjct: 325 LHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFRQKTQLESLNQEL 384
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E FE L LI+ +PVT QYLF
Sbjct: 385 DVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGFEQVLHQLITVAPVTTQYLF 444
Query: 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
VTATLP++IYNK+VE FPDC+V+MGPG+HR S LEE LVDCSGD +K PETAF NKK
Sbjct: 445 VTATLPLDIYNKVVETFPDCEVIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKK 504
Query: 518 SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANM 577
SALL++IE+SPV +TI+FCNKI TCRKVEN L+R DRK ++++VLPFHAALDQ R+ N+
Sbjct: 505 SALLKIIEESPVRRTIIFCNKIETCRKVENALRRVDRKASQIKVLPFHAALDQAQRITNI 564
Query: 578 KEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTG 637
KEF ++ ++ +FLVCTDRASRGIDFA V+HVVLFD+PRDPSEYVRRVGRTARGA G G
Sbjct: 565 KEFLNKQTADS-MFLVCTDRASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGNG 623
Query: 638 KAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
KAF+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 624 KAFVFAVGKQVSLARRVMERNMKGHPLHDVP 654
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 345/636 (54%), Positives = 429/636 (67%), Gaps = 59/636 (9%)
Query: 68 GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHD-HDPPIPPKHLLDSSNWNKDPSQ 126
G GY R ++T GA L+D TG+ VIVWGG DDD +P +P +L S+
Sbjct: 49 GEGYERVAMDTPGAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVPSPAVL---------SR 99
Query: 127 PTTSAPVLRNNDCSIPSKKGV------ISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE 180
T S N D S SK + SF RLKAQ+V+ + ++++ LK+E
Sbjct: 100 STHSG----NTDSSSLSKGAANSGSSGVGSFGRLKAQKVQD-------LARRSLANLKRE 148
Query: 181 -----------GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHE--KS 227
S +E + G ++ PA N NSR K +S
Sbjct: 149 PTSSRTSTTRRNESSFVDKKVEGESDFGRRKYGSEYPARRAKPN---NNSRDEKTREVRS 205
Query: 228 GTKIDRGWRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKE 272
+ R +R G E T PK ++ K D FFSR+SFKE
Sbjct: 206 LDSVLRQYRGDGDSDFRSEEATSGPKVWGKVADATSYRREDRKQKVPLDSGFFSRRSFKE 265
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
+GC D ++ +L+ F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P+IQ LR+
Sbjct: 266 IGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQNLRK 325
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
EE G+ KS+ +PRV+IL PTAEL+SQVL NCRS+SK G PFRSMV TGGFRQKTQLE+
Sbjct: 326 EEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQLES 385
Query: 393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
L++ +DVLIATPGRF++L++EG +QL NLRC + DEVDILF +E FE L LI+ +PVT
Sbjct: 386 LEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGFEQVLHQLITVAPVT 445
Query: 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512
QYLFVTATLP++IYNK+VE FPDC+V+MGP +HR S LEE LVDCSGD +K PETA
Sbjct: 446 TQYLFVTATLPLDIYNKVVETFPDCEVIMGPSIHRTSARLEEILVDCSGDDNDEKNPETA 505
Query: 513 FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQET 572
F NKK AL+++IE+SPV KTIVFCNKI TCRKVEN+L R DRK ++++VLPFHAALDQE
Sbjct: 506 FSNKKLALVKIIEESPVRKTIVFCNKIETCRKVENVLTRLDRKASQIKVLPFHAALDQEK 565
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARG 632
R+ANMK F +S ++ +FLVCTDRASRGIDF V+HVVLFD+PRDPSEYVRRVGRTARG
Sbjct: 566 RIANMKAFLNKQSSDS-MFLVCTDRASRGIDFTNVNHVVLFDYPRDPSEYVRRVGRTARG 624
Query: 633 AGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
A G GKAF+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 625 ASGDGKAFVFAVGKQVSLARRVMERNLKGHPLHDVP 660
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 339/629 (53%), Positives = 424/629 (67%), Gaps = 56/629 (8%)
Query: 68 GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQP 127
G GY R ++T GA L+D TG+ VIVWGG DDD + P P
Sbjct: 49 GEGYERVAMDTPGAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVP---------------- 92
Query: 128 TTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE------- 180
+ A + R+ + S + SF RLKAQ+V+ + ++++ LK+E
Sbjct: 93 -SPAVLSRSTHSAANSGSSGVGSFGRLKAQKVQD-------LARRSLANLKREPTSSRTS 144
Query: 181 ----GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHE--KSGTKIDRG 234
S +E + G ++ PA N NSR K +S + R
Sbjct: 145 TTRRNESSFVDKKVEGESDFGRRKYGSEYPARRAKPN---NNSRDEKTREVRSLDSVLRQ 201
Query: 235 WRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCSDYM 279
+R G E T PK ++ K D FFSR+SFKE+GC D +
Sbjct: 202 YRGDGDSDFRSEEATSGPKVWGKVADATSYRREDRKQKVPLDSGFFSRRSFKEIGCGDEI 261
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+ +L+ F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P+IQ LR+EE G+
Sbjct: 262 LGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQNLRKEEAMGVH 321
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
KS+ +PRV+IL PTAEL+SQVL NCRS+SK G PFRSMV TGGFRQKTQLE+L++ +DV
Sbjct: 322 KSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQLESLEQELDV 381
Query: 400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
LIATPGRF++L++EG +QL NLRC + DEVDILF +E FE L LI+ +PVT QYLFVT
Sbjct: 382 LIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGFEQVLHQLITVAPVTTQYLFVT 441
Query: 460 ATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
ATLP++IYNK+VE FPDC+V+MGP +HR S LEE LVDCSGD +K PETAF NKK A
Sbjct: 442 ATLPLDIYNKVVETFPDCEVIMGPSIHRTSARLEEILVDCSGDDNDEKNPETAFSNKKLA 501
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L+++IE+SPV KTIVFCNKI TCRKVEN+L R DRK ++++VLPFHAALDQE R+ANMK
Sbjct: 502 LVKIIEESPVRKTIVFCNKIETCRKVENVLTRLDRKASQIKVLPFHAALDQEKRIANMKA 561
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639
F +S ++ +FLVCTDRASRGIDF V+HVVLFD+PRDPSEYVRRVGRTARGA G GKA
Sbjct: 562 FLNKQSSDS-MFLVCTDRASRGIDFTNVNHVVLFDYPRDPSEYVRRVGRTARGASGDGKA 620
Query: 640 FIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
F+F VGKQVSLA+R+MERN KGHPLHDVP
Sbjct: 621 FVFAVGKQVSLARRVMERNLKGHPLHDVP 649
>gi|24476045|gb|AAN62787.1| Putative DEAD/DEAH box RNA helicase protein [Oryza sativa Japonica
Group]
Length = 758
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 339/663 (51%), Positives = 434/663 (65%), Gaps = 95/663 (14%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 120 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 169
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE--- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 170 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESDE 218
Query: 192 -----------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
N R+ D A S++ + Y ++ + G++ G + G+
Sbjct: 219 DGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWGN 277
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 278 ISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYR 334
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA-- 358
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELA
Sbjct: 335 PVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQ 394
Query: 359 --------------------------------SQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
SQVL+NCRS+SK GVPFRSMV TGGFRQ
Sbjct: 395 VFYTLNVILPMFSDCFYAKLGKAGVLIGTFLISQVLNNCRSISKSGVPFRSMVATGGFRQ 454
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
KTQLE+L + +DVLIATPGRF++L++EG +QL NLRC +LDEVDIL+ +E FE L LI
Sbjct: 455 KTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLI 514
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE------------ 494
+ +P+T QYLFVTATLP++IYNK+VE FPDC+++MGPG+HR S LEE
Sbjct: 515 TVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEVGHFLLSSFLRK 574
Query: 495 ---------FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKV 545
LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNKI TCRKV
Sbjct: 575 MFPGDTFWRILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNKIETCRKV 634
Query: 546 ENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFA 605
EN L+R DRK ++++VLPFHAALDQ+ R+AN+KEF ++ ++ +FLVCTDRASRGIDFA
Sbjct: 635 ENALRRVDRKASQIKVLPFHAALDQQQRIANIKEFLNKQTADS-MFLVCTDRASRGIDFA 693
Query: 606 GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665
V+HVVLFD+PRDPSEYVRRVGRTARGA G GKAF+F VGKQVSLA+R+MERN KGHPLH
Sbjct: 694 NVNHVVLFDYPRDPSEYVRRVGRTARGASGNGKAFVFAVGKQVSLARRVMERNIKGHPLH 753
Query: 666 DVP 668
DVP
Sbjct: 754 DVP 756
>gi|357467561|ref|XP_003604065.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355493113|gb|AES74316.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 568
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/416 (73%), Positives = 349/416 (83%), Gaps = 8/416 (1%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
S D +FFS KSFK +GC+D+MIESL + RPS IQAM+FPPV+ GKSCI+ADQSGSGK
Sbjct: 120 SEDTNFFSLKSFKGIGCADFMIESLHNLSLTRPSNIQAMSFPPVIAGKSCIIADQSGSGK 179
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRS 377
TLAYL+P+IQRLRQ+ELQGL KS+S SP ++ILAPTAELASQV NCRS+SK GV PF+S
Sbjct: 180 TLAYLVPIIQRLRQQELQGLHKSSSQSPTLLILAPTAELASQVFHNCRSISKSGVVPFKS 239
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
M+VTGGFRQKTQL+ L +GVDVLIATPGRF+FLI +G A+LDEVDILF DED
Sbjct: 240 MLVTGGFRQKTQLDTLNQGVDVLIATPGRFLFLINQGFF-------AVLDEVDILFGDED 292
Query: 438 FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497
FE ALQ LISSSPV QYLFVTATLP +Y+KLVEVFPDC++VMGP MHRI+ LEE +V
Sbjct: 293 FEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRINSRLEEIIV 352
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
DCSG+ +KT +TAFLNKK+ALLQL EK+ V +TIVFCNKI TCRKVEN L RFDRK
Sbjct: 353 DCSGEDGQEKTLDTAFLNKKAALLQLAEKNRVPRTIVFCNKIETCRKVENALNRFDRKGI 412
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
R++VLPFHAA+ QE+RLA+MKEFT S KE F+VCTDRASRGIDF VDHV+LFD+PR
Sbjct: 413 RMQVLPFHAAMTQESRLASMKEFTRSPPKELSQFMVCTDRASRGIDFTRVDHVILFDYPR 472
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
DPSEYVRRVGRTARGA G GKAFIFVVGKQVSLA+++MERNRKGHPLHDVPS L
Sbjct: 473 DPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKVMERNRKGHPLHDVPSGHWL 528
>gi|449498867|ref|XP_004160656.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 382
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/372 (77%), Positives = 329/372 (88%)
Query: 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361
V++GKSCI++DQSGSGKTLAYL+P+IQRLRQEEL+G KS+S SP++VI+ PTAELASQV
Sbjct: 9 VIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSSKSPQIVIIVPTAELASQV 68
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
LSNCRS+SK GVPFRSMVVTGGFRQKTQL+NLQEGVDVLIATPGR M LI EG L L NL
Sbjct: 69 LSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLINEGFLLLSNL 128
Query: 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481
RCA++DEVDILFNDEDFEVAL+SL+ S+PV QYLFVTATLPV+IYN LVE FPDC+V+M
Sbjct: 129 RCAVMDEVDILFNDEDFEVALRSLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIM 188
Query: 482 GPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVT 541
GPG+HRISP LEE LVDCSG+ E KTP+ AF NKK ALLQ+ E +PV KTIVFCNKI T
Sbjct: 189 GPGVHRISPSLEEVLVDCSGEDEQHKTPDAAFSNKKDALLQIAEGTPVLKTIVFCNKIET 248
Query: 542 CRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRG 601
CRKVEN L+RFD+K +R++V PFHAAL +E+RLANM+ FT S S + FLVCTDRASRG
Sbjct: 249 CRKVENALQRFDKKGSRLQVFPFHAALARESRLANMEAFTNSHSNQVSKFLVCTDRASRG 308
Query: 602 IDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG 661
IDF VDHV+LFDFPRDPSEYVRRVGRTARGA G GKAFIFVVGKQVSLA+RI+ERNRKG
Sbjct: 309 IDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFVVGKQVSLARRIIERNRKG 368
Query: 662 HPLHDVPSAFEL 673
HPLHDVPSA+EL
Sbjct: 369 HPLHDVPSAYEL 380
>gi|302762591|ref|XP_002964717.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
gi|300166950|gb|EFJ33555.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
Length = 420
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/407 (56%), Positives = 304/407 (74%), Gaps = 3/407 (0%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F S K F+ LG S MI +L +RPS+IQA+++ V+ G SCI+ADQ+GSGKTLAYL
Sbjct: 15 FLSTKKFQALGASQEMIAALSSLEIVRPSEIQALSYKQVMRGNSCIIADQTGSGKTLAYL 74
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
P++QRLR++E +G + ST+ +PRV++LAPT+ELA QVLS CR+LS P +SMV TGG
Sbjct: 75 APLVQRLREDEEKG-NFSTAKNPRVLVLAPTSELAMQVLSVCRALSTT-CPLKSMVATGG 132
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
F+ KTQ+ENL G D+++ATPGRF+ ++E +QL L+ +LDEVDILF +E+F A+Q
Sbjct: 133 FKWKTQVENLASGPDIVVATPGRFLHHLEEETIQLGKLQSVVLDEVDILFEEEEFVEAMQ 192
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ + QY+ VTATLP ++++K+ PD ++GP +H +PGL E LVDCSGD
Sbjct: 193 RVRKLASKDVQYIHVTATLPTDVHDKIFNKHPDSVPLLGPSLHLTAPGLNEILVDCSGDD 252
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+S+KTPE AF NKK LL L+ + V KTI+FCNKI TCRKVENIL R+DR T++ VLP
Sbjct: 253 DSEKTPEAAFENKKKELLNLLGEKRVPKTIIFCNKIETCRKVENILNRYDRSGTKLSVLP 312
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
+HAAL QE RL ++++F +S+ E FLVCTDRASRG+D GV V+LFD+PRDPSEY+
Sbjct: 313 YHAALSQEARLQSLQDFLSSQKPEVSTFLVCTDRASRGLDSVGVGRVILFDYPRDPSEYI 372
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RRVGRTAR AGG GK F+FVVGKQVSLA+++M RN K HP+H VP A
Sbjct: 373 RRVGRTAR-AGGAGKVFVFVVGKQVSLARKVMARNEKRHPVHAVPGA 418
>gi|302756457|ref|XP_002961652.1| hypothetical protein SELMODRAFT_403724 [Selaginella moellendorffii]
gi|300170311|gb|EFJ36912.1| hypothetical protein SELMODRAFT_403724 [Selaginella moellendorffii]
Length = 583
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/377 (55%), Positives = 280/377 (74%), Gaps = 13/377 (3%)
Query: 294 IQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353
++A+++ V+ G SCI+ADQ+GSGKTLAYL P++QRLR++E +G + ST+ +PRV++LAP
Sbjct: 218 VKALSYKQVMRGNSCIIADQTGSGKTLAYLAPLVQRLREDEEKG-NFSTAKNPRVLVLAP 276
Query: 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
T+ELA QVLS CR+LS P +SMV TGGF+ KTQ+ENL G D+++ATPGRF+ ++E
Sbjct: 277 TSELAMQVLSVCRALSTT-CPLKSMVATGGFKWKTQVENLASGPDIVVATPGRFLHHLEE 335
Query: 414 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473
+QL L+ +LDEVDILF +E+F A+Q + + QY+ VTATLP ++++K+
Sbjct: 336 ETIQLGKLQSVVLDEVDILFEEEEFVEAMQRVRKLASKDVQYIHVTATLPTDVHDKIFNK 395
Query: 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTI 533
PD ++GP +H +PGL E LVDCSGD +S+KTPE AF NKK LL L+ +
Sbjct: 396 HPDSVPLLGPSLHLTAPGLNEILVDCSGDDDSEKTPEAAFENKKKELLNLLGE------- 448
Query: 534 VFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV 593
+I TCRKVENIL R+DR T++ VLP+HAAL QE RL ++++F +S+ E FLV
Sbjct: 449 ---KRIETCRKVENILNRYDRSGTKLSVLPYHAALSQEARLQSLQDFLSSQKPEVSTFLV 505
Query: 594 CTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQR 653
CTDRASRG+D GV+ V+LFD+PRDPSEY+RRVGRTAR AGG GK F+FVVGKQVSLA++
Sbjct: 506 CTDRASRGLDSVGVERVILFDYPRDPSEYIRRVGRTAR-AGGAGKVFVFVVGKQVSLARK 564
Query: 654 IMERNRKGHPLHDVPSA 670
+M RN K HP+H VP A
Sbjct: 565 VMARNEKRHPVHAVPGA 581
>gi|384248412|gb|EIE21896.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 394
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/397 (50%), Positives = 271/397 (68%), Gaps = 10/397 (2%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++L+ RPS IQA A+ + G + +LAD +GSGKTLAYLLP++Q LR+EE Q
Sbjct: 1 MVKALRGIGIERPSYIQAAAYQVLTSGARHIVLADHAGSGKTLAYLLPLVQALREEE-QS 59
Query: 338 LSKSTS--GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE 395
L S + +PRV+ILAPT EL +QVL R L+K G PFRS+ +TGGF+ +TQ E L E
Sbjct: 60 LCDSLTMRNAPRVIILAPTTELCAQVLMVARGLAK-GAPFRSIALTGGFKWRTQKEALDE 118
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE-DFEVALQSLISSSPVTAQ 454
GVDV++ATPGR IK G L+L R +LDEVD+L D F + L +++P +
Sbjct: 119 GVDVVVATPGRLGEHIKAGNLRLDQCRAVVLDEVDVLLGDTFAFAQQVAPLRAAAPEATR 178
Query: 455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
++ VTATL +Y +L + FP GPG+HR +PG+ E LVDCSG ++ +T F
Sbjct: 179 FVLVTATLAENVYLQLQQDFPGITPAFGPGLHRTAPGVLEQLVDCSGGDVINE--DTGFE 236
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF--DRKETRVRVLPFHAALDQET 572
K +ALL+++ + ++TIVFCNKI TCRKVEN+L R D E + VLP+HAA+++
Sbjct: 237 RKSAALLRVLREQDCTRTIVFCNKIETCRKVENLLNRNGEDPNEEGLLVLPYHAAIEEVA 296
Query: 573 RLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARG 632
R +KEF A++ LVCTDRASRGID A V+HVVLFDFPRDPSEYVRR GR +RG
Sbjct: 297 RSKALKEFLAPPMDGAKMVLVCTDRASRGIDSAHVEHVVLFDFPRDPSEYVRRAGRVSRG 356
Query: 633 AGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
AG +G I V+G+QVSLA++++ERN+KG P+H VPS
Sbjct: 357 AGASGVVSILVLGRQVSLARQLLERNQKGLPIHKVPS 393
>gi|298710365|emb|CBJ31982.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 613
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 194/406 (47%), Positives = 271/406 (66%), Gaps = 11/406 (2%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+S KS ++G SD + +LK +RPS+IQA+++ ++ G C++ADQ+GSGKTLAYL
Sbjct: 209 FYSIKSLPDIGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYL 268
Query: 324 LPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
P++QRLR EEL + ++ G PRV+ILAPTAELA QV + LS VPFRS TG
Sbjct: 269 APLVQRLRLEELAEVHGRARPGRPRVLILAPTAELAQQVYGVAQRLSGS-VPFRSCCFTG 327
Query: 383 GFRQ--KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
G + KTQ + L+EGVDVL+ATPGR L++ G+L L + R ILDEVD+LF DE F++
Sbjct: 328 GPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQL 387
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
A + + +P Q++FVTATLP + + L E FP K ++GPG+HR++PG+EE L+DCS
Sbjct: 388 A--PIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCS 445
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
G + ET K+ ALL +E+ +T+VFCN I CR+VEN+L R R +
Sbjct: 446 GPPGEPRNEETGLARKRDALLSQLERRMALRTLVFCNTIQGCRQVENMLSRASRG-GQFE 504
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF--AGVDHVVLFDFPRD 618
L +H+A+D + +NM++F S + + +VCTDR+SRG+DF A V+HV+L+DFPRD
Sbjct: 505 TLVYHSAIDPKQAASNMQQFMRSNALSP-MVMVCTDRSSRGMDFDRAEVEHVLLYDFPRD 563
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
P EY+RRVGRTAR AG G + G+QV L + IM N++G L
Sbjct: 564 PIEYMRRVGRTAR-AGRKGVVTVLAWGRQVPLVREIMAGNKRGKRL 608
>gi|307106205|gb|EFN54452.1| hypothetical protein CHLNCDRAFT_135879 [Chlorella variabilis]
Length = 565
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 196/440 (44%), Positives = 271/440 (61%), Gaps = 21/440 (4%)
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE--GKS 307
D P R +A FFS + LG S ++ +L+ RPS IQA A+ + + +
Sbjct: 82 DIPVVRPGQAASATFFSSDRWDALGASAEVVAALQTLGITRPSHIQAAAYRALAQSGARH 141
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+LAD +GSGKTLAYLLP++Q LR+EE + G + + PR+V++ PTAEL +QV+ CR
Sbjct: 142 VVLADHAGSGKTLAYLLPLLQVLREEERVLGAAATQPHCPRLVVVVPTAELCAQVVRVCR 201
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426
+LS+ G+ FRS TGG +TQ E L+ GVDVL+ TPGR L+ EG LQL R A++
Sbjct: 202 ALSRAGLRFRSAAATGGRPLRTQKEMLEGGVDVLVGTPGRLAELLGEGCLQLTFCR-AVV 260
Query: 427 DEVDILFNDEDFEVALQ--SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
+ + EDF A Q L +++P T +++F TAT+P ++Y L E FP +GPG
Sbjct: 261 VDEVDVLLGEDFAFAEQVAPLRAAAPSTTRFVFATATIPEQVYLDLEEAFPGLAAALGPG 320
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
+HR +PG+ E LVDCSG E + E+ F K +AL ++++ S++IVFCNKI +CRK
Sbjct: 321 LHRTAPGITEQLVDCSGGDEV--SAESGFQRKAAALFAVLQEQRASRSIVFCNKIESCRK 378
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEF-------------TTSRSKEARLF 591
VEN L R E VLP HAA+ R AN++ F + S + RL
Sbjct: 379 VENFLNRTFSHEDHAEVLPHHAAIADTHRDANLRRFLALPDSSGGRRGGSASTNTPERLV 438
Query: 592 LVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLA 651
LVCTDRASRG+D A V+HVVLFD PRDPSEY+RRVGRT RGAG +G + +G+QV LA
Sbjct: 439 LVCTDRASRGMDSAFVEHVVLFDMPRDPSEYLRRVGRTTRGAGSSGVVSVLALGRQVRLA 498
Query: 652 QRIMERNRKGHPLHDVPSAF 671
+ I++RN+ LH +P+
Sbjct: 499 REIIDRNQGDLVLHRIPAVL 518
>gi|255079722|ref|XP_002503441.1| predicted protein [Micromonas sp. RCC299]
gi|226518708|gb|ACO64699.1| predicted protein [Micromonas sp. RCC299]
Length = 831
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 196/422 (46%), Positives = 275/422 (65%), Gaps = 21/422 (4%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS---CILADQSGSGKT 319
+FFS F +LG SD + E+LK RPS IQ++++ + E S +LADQ+GSGKT
Sbjct: 413 NFFSGARFAQLGASDGVTEALKEMGIERPSHIQSLSYRALTEEDSNDHVLLADQAGSGKT 472
Query: 320 LAYLLPVIQRLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
LAYLLP++QRL + E +G +K T PR+++L PT+ELA QVL R+LS+ G+ RS+
Sbjct: 473 LAYLLPLLQRLAETERTEGRAKPTR--PRMLVLVPTSELAVQVLGVIRTLSRGGLRCRSL 530
Query: 379 VVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
VTGG + +TQ+E ++EG DV++ TPGR +L+++ L +L+ ++DE D+L D
Sbjct: 531 AVTGGDKNSRTQIETIREGCDVVVGTPGRVGWLVQQKKLDPGDLQAVVMDECDVLLGDS- 589
Query: 438 FEVALQ--SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC-KVVMGPGMHRISPGLEE 494
FE A Q L + P +++ VTAT+P ++ +L F +VV GPG+HR + GL E
Sbjct: 590 FEFAEQVAPLRDAVPNATRFVLVTATIPEDVLKQLRAFFDGALRVVQGPGLHRPAAGLLE 649
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLI----EKSPVSKT---IVFCNKIVTCRKVEN 547
LVDCSG D ++ F K +AL QL+ EK ++ ++FCNKI TCRK+EN
Sbjct: 650 RLVDCSGGDVVDD--QSGFWRKFAALEQLLAAEKEKGTDGRSKRMLLFCNKIETCRKIEN 707
Query: 548 ILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK-EARLFLVCTDRASRGIDFAG 606
+L R D+ + LP+HAAL + R ++++EF + +A LVCTDRASRG+D AG
Sbjct: 708 LLIRADKDGQDLVPLPYHAALTPDRRKSSLEEFLKPHKRGDAPKMLVCTDRASRGLDAAG 767
Query: 607 VDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
V HVVLFDFPRDPSEYVRRVGRTARGA G G+ + V+G+QV LA+ IM RN +G P+
Sbjct: 768 VTHVVLFDFPRDPSEYVRRVGRTARGALGKGEVSVLVLGRQVRLAREIMRRNTRGDPVES 827
Query: 667 VP 668
P
Sbjct: 828 TP 829
>gi|145351717|ref|XP_001420214.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580447|gb|ABO98507.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 431
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 273/423 (64%), Gaps = 21/423 (4%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPV---VEGKSC-------ILAD 312
FFS F +LG SD + +LK RPS IQA ++ + V G S +LAD
Sbjct: 15 FFSGARFNQLGASDEVRAALKESFKIDRPSHIQAQSYRVLSGDVAGASAPRYDGHVLLAD 74
Query: 313 QSGSGKTLAYLLPVIQRLRQEEL-QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
Q+GSGKTLAYLLP++QR+++ E+ QG SKS PR+++L PT+ELA+QV + LS
Sbjct: 75 QAGSGKTLAYLLPLLQRVQKIEVEQGRSKSKK--PRLLVLTPTSELATQVRDVVKQLSFG 132
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
G+ RS++ + +TQ+E L +GVD+++ TPGR LI+EG + ++ +LDE D+
Sbjct: 133 GLRSRSLLANNVSKSRTQIEALVDGVDIVVGTPGRVARLIEEGKMFTDDVDAVVLDECDV 192
Query: 432 LFNDEDFEVALQSLISSSPVTA--QYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRI 488
L E FE A Q + V + Q++ VTAT+P E+ +L + F D +VV GPG+HR
Sbjct: 193 LLG-ESFEFAEQVAPIRNAVKSDTQFVLVTATIPDEVLKQLKKFFERDIRVVQGPGLHRP 251
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
S G+ E L+DCSG D ++ F K ALL L+E + ++FCNKI TCRK+EN+
Sbjct: 252 SAGMLERLIDCSGGDVFDD--QSGFYRKFKALLDLLEVDKADRALLFCNKIETCRKLENM 309
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
L R DR + ++LP+HAAL +E + N+KEF TS SK + LVCTDRASRG+D + V
Sbjct: 310 LTRADRDGDKYKILPYHAALSREQQQRNLKEFITSPSKMPHI-LVCTDRASRGLDASRVK 368
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
HV+LFDFPRDPSEYVRRVGRTARGA G G+ + V+G+QV LA+ IM RN +G P+ P
Sbjct: 369 HVILFDFPRDPSEYVRRVGRTARGALGEGRVSVLVLGRQVRLAREIMRRNDRGDPVEATP 428
Query: 669 SAF 671
+ F
Sbjct: 429 TNF 431
>gi|302829735|ref|XP_002946434.1| hypothetical protein VOLCADRAFT_86719 [Volvox carteri f.
nagariensis]
gi|300268180|gb|EFJ52361.1| hypothetical protein VOLCADRAFT_86719 [Volvox carteri f.
nagariensis]
Length = 641
Score = 339 bits (870), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 202/489 (41%), Positives = 269/489 (55%), Gaps = 70/489 (14%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF-------- 299
P D P R G FF+ S++ +G + ++ +LK RPS IQA+AF
Sbjct: 154 PYDLPLVRPDDGDKGTFFAGSSWRHVGAMEEVVSALKTLGISRPSHIQALAFSALCGTGS 213
Query: 300 ----PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPT 354
P +LADQ+GSGKTLAYL P++Q LRQEEL ++ T G PR +++APT
Sbjct: 214 GTKRAPAPPSAPIVLADQAGSGKTLAYLAPLMQILRQEELAAGTRVTRPGCPRGIVVAPT 273
Query: 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ--------KTQLENLQEGVDVLIATPGR 406
EL QVL R+LS G+ R+ TGG + +TQ L EGVD+L+ATPGR
Sbjct: 274 VELVQQVLRVARALSSAGLRCRTAAFTGGQKDEKARAVSFRTQKGVLGEGVDLLVATPGR 333
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDE-DFEVALQSLISSSPVTAQYLFVTATLPVE 465
++ G L+L + R +LDEVD+L D DF + L +++P + +++ VTATLP
Sbjct: 334 LQKHLQGGTLELTDCRMLVLDEVDVLMGDRADFSAQIVPLHAAAPPSLRFVLVTATLPQH 393
Query: 466 IYNKLVEVFP------DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
++ +L +V+P + V GPG+HR + GL E LVDCSG E T E+ K A
Sbjct: 394 VFAELKDVWPRGEGEGGIRTVFGPGLHRTAAGLVEELVDCSGGDEV--TEESGRKRKLEA 451
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L L+E+ +T+VFCNKI CR VEN L R D ++ + +VLP+H A+ + R M E
Sbjct: 452 LKTLLERHRAPRTLVFCNKIDACRDVENFLLRTDPQQQKYKVLPYHEAIRDDLRAEAMAE 511
Query: 580 FTTSR-------------------------SKEAR---------------LFLVCTDRAS 599
F S E R L LV TDR S
Sbjct: 512 FLRPVRRRQQPQPPQPPQLPQQGGAARGEMSHEPRERPEGGEGGDQGGPALVLVATDRTS 571
Query: 600 RGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659
RGID +HV+LFDFPRDPSEYVRRVGRTARGAGG G V+G+QV LA+ I+ERN+
Sbjct: 572 RGIDVLDCEHVILFDFPRDPSEYVRRVGRTARGAGGRGTVSSLVLGRQVPLAREIIERNQ 631
Query: 660 KGHPLHDVP 668
KG PLH +P
Sbjct: 632 KGMPLHSLP 640
>gi|412992636|emb|CCO18616.1| predicted protein [Bathycoccus prasinos]
Length = 888
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 197/480 (41%), Positives = 275/480 (57%), Gaps = 79/480 (16%)
Query: 264 FFSRKSFKELGCSDYMIESLK-RQNFLRPSQIQAMAFPPVVEGKS--------------- 307
F+S FK++G S+ ++ +L+ R N RPS IQA +F ++ S
Sbjct: 412 FYSGAKFKDIGASELIVNALESRMNISRPSHIQAQSFKILLHDHSDSYDEESSVANDDEG 471
Query: 308 ---CILADQSGSGKTLAYLLPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
+LADQ+GSGKTL+YLLP++QRL R E G+S S PR ++L PT+ELA QV
Sbjct: 472 ANHVLLADQAGSGKTLSYLLPLLQRLERLERDSGMS--VSKRPRALVLVPTSELARQVTE 529
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKT-------------------QLENLQEGVDVLIATP 404
+ LSK GV RSM+ TGG +T Q + L+ GVD++I TP
Sbjct: 530 VVKELSKGGVRTRSMIATGGASDRTKINRAEQSTRDLTAKFTLTQTKTLKSGVDIVIGTP 589
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ-SLIS--SSPVTAQYLFVTAT 461
GR +L + G ++L +L ILDE D+L D FE A Q I ++P + +++ VTAT
Sbjct: 590 GRIRYLCETGRMELDDLDSIILDECDVLLGDA-FEFASQIKPIKDLANPTSTRFVLVTAT 648
Query: 462 LPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
+P ++ +L + F D +V+ GPG+HR S G E LVDCSG SD+ ++ F K +A
Sbjct: 649 IPDQVLRELKQFFYPQDIRVIQGPGLHRPSAGTLERLVDCSGGDVSDE--QSGFYRKYAA 706
Query: 520 LLQLI----------------EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
L++++ +K S+T++FCNKI TCRK+EN+L R D +VLP
Sbjct: 707 LMKILRDDILPSTAGTTAKTSKKKSASRTLLFCNKIETCRKLENLLIRSDPDGASYKVLP 766
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL--------------FLVCTDRASRGIDFAGVDH 609
+HAAL +E R N+++F RS + L+CTDRASRG+D + H
Sbjct: 767 YHAALSREKRDENLRKFLGRRSSSEKQRGEFTVDDDDSTPQLLICTDRASRGLDGKKIKH 826
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
VVLFDFPRDPSEYVRRVGRTARGA GTG V+G+Q+ LA+ IM RN +G P+ P+
Sbjct: 827 VVLFDFPRDPSEYVRRVGRTARGALGTGTVTALVIGRQLKLAREIMRRNSRGDPVEGTPT 886
>gi|387196760|gb|AFJ68778.1| hypothetical protein NGATSA_2008700, partial [Nannochloropsis
gaditana CCMP526]
Length = 339
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/327 (50%), Positives = 230/327 (70%), Gaps = 8/327 (2%)
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
SPRVV+LAPTAELA+QV S R+L++ +P R VTGG +TQ E L++GVDVLI TP
Sbjct: 19 SPRVVVLAPTAELAAQVASVARALTR-HMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTP 77
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
GR +L++E + L ++ +LDEVD++F D+ F++A+ + +++P Q+LFVTATLPV
Sbjct: 78 GRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPV 135
Query: 465 EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524
+ +++ FP K + GPG+H+I+P +EE LVDCSG E ++ ET F+ K+ L+Q +
Sbjct: 136 PVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNL 195
Query: 525 EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584
K P +++VFCN I TCRKVEN L+R DR+E R +VL +H+A++ + R N+ F++
Sbjct: 196 LKHPAPRSLVFCNSIPTCRKVENALRRADRQEKRWQVLAYHSAVNPQDRQKNLDIFSS-- 253
Query: 585 SKEARLFLVCTDRASRGIDF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642
E L +VCTDR SRG+DF A V HVVLFDFPRDPSEYVRRVGRT R AG G+
Sbjct: 254 RVERPLIMVCTDRTSRGVDFDTADVQHVVLFDFPRDPSEYVRRVGRTGR-AGRVGRVTAL 312
Query: 643 VVGKQVSLAQRIMERNRKGHPLHDVPS 669
V+G+QV LA+ IME N KG +H VP+
Sbjct: 313 VLGRQVGLARSIMEGNSKGARVHPVPN 339
>gi|219888667|gb|ACL54708.1| unknown [Zea mays]
Length = 424
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 252/411 (61%), Gaps = 53/411 (12%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQG--------------------IGNFGRFKAQKIKSLVTRSAHRKR 128
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 129 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 188
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 189 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 245
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 246 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 305
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 306 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 365
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E
Sbjct: 366 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEE 416
>gi|219122436|ref|XP_002181551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406827|gb|EEC46765.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 603
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/415 (40%), Positives = 260/415 (62%), Gaps = 25/415 (6%)
Query: 264 FFSRKS-------FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
FFSRKS ++ G S+ + + RPS+IQ++A+P + +G I+ADQ+GS
Sbjct: 134 FFSRKSLQDPIFAYQTKGASETFAQLCQGAGIARPSKIQSLAWPILCKGSHTIVADQTGS 193
Query: 317 GKTLAYLLPVIQR-LRQEELQGLSKST-SGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
GKTLAYL+P++ R L Q + +GSPR+++LAPTAELA Q+ + C ++ V
Sbjct: 194 GKTLAYLIPLLTRALEDRNAQPAGTAVPNGSPRIIVLAPTAELADQIRAVCEQMT-ASVS 252
Query: 375 FRSMVVTGGFRQKT----QLENLQ-EGVDVLIATPGRFMFLIK--EGILQLINLRCAILD 427
F ++V+T + T Q+ LQ + VDVLI+TPGR +++ L L L+ +LD
Sbjct: 253 FSTLVITATGKYSTSIRDQIRMLQRQPVDVLISTPGRIATILRTRNSGLDLSALQSIVLD 312
Query: 428 EVDILFNDEDFEVALQSLISSSPVT-AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH 486
EVD+L D+ F L+++ +++P+ Q++FVTATLP + + + F +++ GPG+H
Sbjct: 313 EVDVLLVDDTFGPQLRTVGAAAPLDRTQFVFVTATLPDTVVETVEKEFRGVQLIKGPGLH 372
Query: 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVE 546
R++P ++E LVD S ++++ + F K LL+ + ++ +T+VFCN + +CR VE
Sbjct: 373 RVAPTVQERLVDVSVPSQNNRDAKLCFDVKAKQLLKALRQTRCRRTLVFCNTVESCRSVE 432
Query: 547 NILKRFDRKETRVRVLPFHAALDQETRLANMKEFT----TSRSKEARLFLVCTDRASRGI 602
N+LKR DRK V +H A+ E R N+ F+ T++ ++ LVCTDRA+RG+
Sbjct: 433 NLLKRKDRKGNVFEVRAYHNAMTPENRNENLAVFSHGIRTTQPEKVDYVLVCTDRAARGV 492
Query: 603 DF--AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
DF A VDHVVLFDFP+DP+EYVRRVGRTAR AG TG + +F G Q+ +A+ +M
Sbjct: 493 DFERAPVDHVVLFDFPKDPAEYVRRVGRTAR-AGRTGTSTVFAYGWQLPIARSVM 546
>gi|224008030|ref|XP_002292974.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971100|gb|EED89435.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 661
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 244/441 (55%), Gaps = 74/441 (16%)
Query: 264 FFSRKSFKELGCS----DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
F+S+KS + S + + + RPS+IQ++A+PP++ G++CI+ADQ+GSGKT
Sbjct: 169 FYSQKSLTDPSFSIPNTSFFPQLCQSAKITRPSRIQSLAWPPLLRGENCIVADQTGSGKT 228
Query: 320 LAYLLPVIQRL----RQEEL-QGLS-----KSTSGSPRVVILAPTAELASQVLSNC---- 365
LAY+LP++Q+L R++E+ + L+ K +GSPR+V+L PTAELA Q+ S C
Sbjct: 229 LAYMLPLLQKLHLSDRKDEMDESLTITQRKKMRTGSPRIVVLTPTAELADQIHSVCTGLN 288
Query: 366 RSLSKCG----VPFRSMVVTGGFRQKT----QLENLQEG-VDVLIATPGRFMFLI--KEG 414
+LSK G F V T T Q+ LQ VDVLI+TPGR ++ K
Sbjct: 289 ENLSKQGGVDAWNFSPFVTTATGSHATNIRDQIRMLQSTPVDVLISTPGRLATILRTKNA 348
Query: 415 ILQLINLRCAILDEVDILFNDEDF-------EVALQS------LISSSPVTAQYLFVTAT 461
L L +++ +LDEVD L DE F VA+QS + Q++FVTAT
Sbjct: 349 GLDLGHVQSMVLDEVDFLLVDETFGPQLRTVGVAVQSGSADKADAADGDKQPQFIFVTAT 408
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
LP ++ + FP + GPG+HRI+P + + LVD S S++ P
Sbjct: 409 LPDDVLESIKSEFPSVTELRGPGLHRITPSVHQSLVDVSVPATSNRDPRA---------- 458
Query: 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
C I TCR VEN+L+R DR+ R RV +H AL + RL N+ F+
Sbjct: 459 --------------CFDIKTCRNVENVLRRKDRRGRRNRVWAYHNALGADVRLKNLYSFS 504
Query: 582 TSRSKE-----ARLFLVCTDRASRGIDFAG--VDHVVLFDFPRDPSEYVRRVGRTARGAG 634
+ LVCTDRA+RGIDF +DHVVLFDFP+DP+EYVRRVGRTAR AG
Sbjct: 505 HDGANYEDDDGMERILVCTDRAARGIDFDASPIDHVVLFDFPKDPAEYVRRVGRTAR-AG 563
Query: 635 GTGKAFIFVVGKQVSLAQRIM 655
G + +F G Q+ +A++IM
Sbjct: 564 RAGASTVFAYGWQLPIARQIM 584
>gi|159464707|ref|XP_001690583.1| DEAD/DEAH box helicase-related protein [Chlamydomonas reinhardtii]
gi|158280083|gb|EDP05842.1| DEAD/DEAH box helicase-related protein [Chlamydomonas reinhardtii]
Length = 496
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/356 (40%), Positives = 206/356 (57%), Gaps = 19/356 (5%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---VE 304
P D P R G FF+ +++ +G S+ ++ +LK RPS IQA AF +
Sbjct: 7 PYDLPIVRPYDGDKGTFFAGATWRGVGASEEVVAALKTLGIQRPSHIQAAAFTAFNTHSD 66
Query: 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLS 363
+ +LADQ+GSGKT+AYLLP++Q LR +EL + T PR +++APT EL QVL
Sbjct: 67 RSALVLADQAGSGKTMAYLLPLLQALRADELAAGGRVTQPRCPRGIVVAPTVELVQQVLR 126
Query: 364 NCRSLSKCGVPFRSMVVTGG----------FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
R+LS G+ R+ TGG FR TQ + L EGVD+L+ATPGR + +
Sbjct: 127 VARALSGAGLRLRTAAFTGGQADDKARAASFR--TQRDLLAEGVDLLVATPGRLQQHLAD 184
Query: 414 GILQLINLRCAILDEVDILFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472
G L+L + ++DEVD+L + F + L +++P T +++ TATLP I+ +L E
Sbjct: 185 GGLRLDTCKALVMDEVDVLLGERAAFLEQVAPLRAAAPSTMRFMLATATLPQHIFAQLRE 244
Query: 473 VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKT 532
V+PD V GPG+HR + GL E LVDCSG D + ET K AL ++++ ++T
Sbjct: 245 VWPDLMPVFGPGLHRTAAGLVEELVDCSGGD--DISEETGRKRKLEALQTVVDRHKAART 302
Query: 533 IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEA 588
IVFCNKI CR VEN L+R D +E + RVLP+H A+ E R +M R++ A
Sbjct: 303 IVFCNKIDACRDVENYLRREDPQEEKYRVLPYHEAIRDEIRAQHMHRRAVLRARGA 358
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 222/414 (53%), Gaps = 30/414 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF +LG + ++ + RP+ IQA A P ++ G ++A +GSGKTL YLLPVI
Sbjct: 1 ESFADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVI 60
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q+++ E + +++ PRV+I+ PT ELA QV S +++S F S ++ GG +
Sbjct: 61 QQMKDAERETGARAKPKRPRVLIVGPTRELAEQVRSVAKAVSH-HCKFSSELIIGGEKFA 119
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL-- 445
TQ + L +DV++ TPGR + +EG L L N+ ILDE D LF + F ++ L
Sbjct: 120 TQRQVLDRSLDVVVGTPGRIIKHCEEGNLFLSNVTHVILDEADTLF-EAGFGDEVRRLLR 178
Query: 446 -ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ +P Q + V+AT+ ++ + PD + + P +H+ +P L VDC G
Sbjct: 179 PLQKNPEGKQCIVVSATMAEKVAKMVSAELPDLQRIDTPSLHKSAPNLRHRFVDCPGS-- 236
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVS--KTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
++K + + Q++ S KT+VFCN + +C+ VE F E + V+
Sbjct: 237 ---------VDKMAIVEQIVSGDFRSGKKTMVFCNTMPSCQAVE-----FSLNEAELPVV 282
Query: 563 PFHAALDQETRLANMKEFTT-SRSKEARLFLVCTDRASRGIDFAG-----VDHVVLFDFP 616
++ + E R +M+EF S + + +VCTD A+RG+DF G VDHVV FDFP
Sbjct: 283 MYNGDMTAEERKESMREFVEGSHADGTAVVMVCTDLAARGLDFGGGEKGKVDHVVNFDFP 342
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
+P +Y+ R GRTAR AG TGK V K LAQ I + G PL S+
Sbjct: 343 MNPIDYIHRSGRTAR-AGATGKVTNLVAKKDRILAQEIDVAVKMGQPLDSATSS 395
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 144/415 (34%), Positives = 216/415 (52%), Gaps = 32/415 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E G D + + P+ IQ++A P ++ G + ++A +GSGKTL YLLP+I
Sbjct: 95 SFRETGLDDELCAATDALGLETPTDIQSVAIPRILRGGNYMIASHTGSGKTLTYLLPIIH 154
Query: 329 RLRQEE--LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
R+R+EE G ++ PRV++++PT ELA QV +SLS F S +V GG +
Sbjct: 155 RIRREENATVGGGRARPKRPRVLVVSPTRELAEQVAGVAKSLSHH-ARFSSALVIGGDKF 213
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQ 443
TQ L +DV++ TPGR + +KEG + L + +LDE D LF +D V L
Sbjct: 214 ATQRTQLDRSLDVVVGTPGRLVKHVKEGNMYLGRVTHVVLDEADTLFEAGFGDDIRVLLG 273
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
L P + V+AT+ ++ + E P + + P +HR +P L+ VDC G
Sbjct: 274 PL-QKKPEGKSCVIVSATMSDKVVKTIEEDLPGIEKIDTPSLHRAAPNLKHKFVDCPGS- 331
Query: 504 ESDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
++K + + QLIE KT+VF N + +C+ VE L E + V
Sbjct: 332 ----------IDKMAVVTQLIEGDFRAGKKTMVFANTMPSCQAVEYAL-----VEAGLPV 376
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAG-----VDHVVLFDF 615
+ ++ + E R +M+ F + +++ L +VCTD A+RG+DF G VDHVV FDF
Sbjct: 377 VMYNGDMTSEKRAESMEAFVSGAAEDNSLVVMVCTDLAARGLDFGGDSKSKVDHVVNFDF 436
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
P + +Y+ R GRTAR AG GK V K LA I + G+PL S+
Sbjct: 437 PMNAVDYLHRSGRTAR-AGAPGKVTNLVAKKDRVLAGEIDVAVKLGNPLDGATSS 490
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 221/410 (53%), Gaps = 32/410 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVA 441
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F+ F
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAP 290
Query: 442 L-QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L Q + ++ Q + VTAT+ + + + E F + + +H+ + S
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETR 558
G + +K ALLQ++E S SK +VFCN + + R V++ L E +
Sbjct: 351 GGE-----------DKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYL-----SENQ 394
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPR 617
+ + +H + E R+ N+K+F + +E LVCTD A+RG+D VDHVV+FDFP+
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKF---KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPK 450
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K LA RI E R L +
Sbjct: 451 NSIDYLHRTGRTAR-MGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESL 499
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/410 (33%), Positives = 220/410 (53%), Gaps = 32/410 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVA 441
Q ++L +D++ TPGR + I+EG + ++ +LDE D +F+ F
Sbjct: 231 PQEDSLNNAIDMVAGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAP 290
Query: 442 L-QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L Q + ++ Q + VTAT+ + + + E F + + +H+ + S
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETR 558
G + +K ALLQ++E S SK +VFCN + + R V++ L E +
Sbjct: 351 GGE-----------DKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYL-----SENQ 394
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPR 617
+ + +H + E R+ N+K+F + +E LVCTD A+RG+D VDHVV+FDFP+
Sbjct: 395 ISTVNYHGEVPAEQRVENLKKF---KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPK 450
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K LA RI E R L +
Sbjct: 451 NSIDYLHRTGRTAR-MGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESL 499
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/410 (33%), Positives = 220/410 (53%), Gaps = 32/410 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHAR-FRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVA 441
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F+ F
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDITYLVLDEADTMFDRGFGPEIRKFLAP 290
Query: 442 L-QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L Q + ++ Q + VTAT+ + + E F + + +H+ + S
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTTAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETR 558
G + +K ALLQ++E S SK +VFCN + + R V++ L E +
Sbjct: 351 GGE-----------DKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHFL-----SENQ 394
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPR 617
+ + +H + + R+ N+K+F + +E LVCTD A+RG+D VDHVV+FDFP+
Sbjct: 395 ISTVNYHGEVPADQRVENLKKF---KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPK 450
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K LA RI E R L +
Sbjct: 451 NSIDYLHRTGRTAR-MGAKGKVTSLVSRKDQMLAARIEEAMRNNESLESL 499
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 136/411 (33%), Positives = 219/411 (53%), Gaps = 50/411 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++E++K + P+++QA+ P V+ G++ ++A +GSGKTLAYLLP++Q
Sbjct: 183 FNDLGLSDEVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIVQA 242
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR++E + + PR V+L PT ELA QV +SL FR+ +V GG R KTQ
Sbjct: 243 LRRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCH-HARFRAAMVGGGSRMKTQ 301
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI--- 446
++L + +D+++ATPGR + I++G + +L+ +LDE D +F D+ F V ++ +
Sbjct: 302 EDSLNKAIDLIVATPGRLLMHIEQGNMAYGDLKYVVLDEADTMF-DKGFGVEVRKFLNPL 360
Query: 447 ---SSSPVTA--QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
S P Q + VTAT+ + + L E FP K + +H+
Sbjct: 361 RNRSRQPEGEPFQTVLVTATITKAVQSLLDEEFPGIKHIYTSTLHK-------------- 406
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
K E K + +VFCN + +CR V++ L +R T V
Sbjct: 407 -----KILEPELAKGK-------------RVMVFCNTLGSCRAVDHFLS--ERGTTSVN- 445
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+H A+ + R+ N+++F + +++ LVCTD A+RG+D DHV+ FDFP +P +
Sbjct: 446 --YHGAIPADERVENLEKFKNA-DEDSLPALVCTDLAARGLDLV-CDHVINFDFPLNPID 501
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
Y+ R GRTAR G G V + +LA ++ E RKG L + ++ E
Sbjct: 502 YLHRTGRTAR-MGRKGMVTSLVTKRDQTLAIQLEEAMRKGESLEGLTNSRE 551
>gi|145346658|ref|XP_001417802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578030|gb|ABO96095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 436
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 205/393 (52%), Gaps = 29/393 (7%)
Query: 287 NFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSKSTSG 344
N + P++IQ A + G + +A +GSGKTLAYLLPVIQR++ E+ G +
Sbjct: 2 NIVEPTEIQTKAIDVIGRGAGNAFVASHTGSGKTLAYLLPVIQRMKAAEIAAGDRLAKPK 61
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
P+VV+ PT ELA QV ++LS F S +V GG R TQ E L +DV+I TP
Sbjct: 62 RPKVVVACPTRELAEQVAEVAKALSHVA-KFSSYLVVGGRRLGTQKERLDSAIDVVIGTP 120
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL---ISSSPVTAQYLFVTAT 461
GR + + +G L L ++ +LDE D LF + F ++ L + + P + V+AT
Sbjct: 121 GRLIKHVDQGNLFLGSVDAMVLDEADTLF-EAGFGDEVKRLLRPLKARPEGKTCVLVSAT 179
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
+P + + E P + + +HR +PGL+ VDC GD ++K + L
Sbjct: 180 MPDRLKKLVDEELPALQYIKTDSLHRSAPGLKHRFVDCPGD-----------VDKMTVLE 228
Query: 522 QLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
Q++ E K ++FCN + +C VE + D +R + +H + + R M+E
Sbjct: 229 QIVAPEHKQGKKLMIFCNTLPSCIAVERTMFEAD-----IRTVQYHGDMTSDARADAMRE 283
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFA--GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTG 637
F + + E L +VCTD A+RG+DF VDHVV FDFP + +Y+ R GRTAR AG G
Sbjct: 284 FIDADADE-NLTMVCTDLAARGLDFGRVKVDHVVNFDFPMNSLDYIHRSGRTAR-AGAGG 341
Query: 638 KAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
K V K LA I + G P+ + S+
Sbjct: 342 KVTNLVAKKDRVLASEIDNAVKLGLPIDNATSS 374
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 220/411 (53%), Gaps = 38/411 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 95 ESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 154
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 155 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 212
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 213 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 271
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R+S +F +
Sbjct: 272 APLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDF-I 330
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRK 555
SG + NK ALLQ++E S +K +VFCN + + R V++ L
Sbjct: 331 KLSGAE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----T 374
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
E + + +H + E R+ N+ +F R++E LVCTD A+RG+D VDHV++FD
Sbjct: 375 ENHISTVNYHGEVPAEERVENLNKF---RNEEGDCPTLVCTDLAARGLDL-DVDHVIMFD 430
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665
FP + +Y+ R GRTAR G GK V K V+LA RI E +K L
Sbjct: 431 FPSNSIDYLHRTGRTAR-MGAKGKVTSIVAKKDVALATRIEEAMKKNESLE 480
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 142/411 (34%), Positives = 221/411 (53%), Gaps = 38/411 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 94 ESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 153
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 154 QLLRRDEAMLGISMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 211
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 212 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 270
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R+S +F +
Sbjct: 271 APLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDF-I 329
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRK 555
SG + NK ALLQ++E S +K +VFCN + + R V++ L
Sbjct: 330 KLSGAE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----T 373
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
E ++ + +H + E R+ N+ +F R++E LVCTD A+RG+D VDHV++FD
Sbjct: 374 ENQISTVNYHGEVPAEERVENLNKF---RNEEGDCPTLVCTDLAARGLDL-DVDHVIMFD 429
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665
FP + +Y+ R GRTAR G GK V K V+LA RI E +K L
Sbjct: 430 FPSNSIDYLHRTGRTAR-MGAKGKVTSIVAKKDVALATRIEEAMKKNESLE 479
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 138/405 (34%), Positives = 213/405 (52%), Gaps = 30/405 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ +++ P++IQ + P V+EG+S +L +GSGKTLAY+LP++Q
Sbjct: 120 SFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQ 179
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR++E PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 180 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRP 238
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVAL 442
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F+ F L
Sbjct: 239 QEDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPL 298
Query: 443 QSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
++ S S Q + VTAT+ + + E F + +H+ + SG
Sbjct: 299 KNRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSG 358
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETRV 559
+ NK ALLQ++E S +K +VFCN + + R V++ L E ++
Sbjct: 359 SE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----GENQI 402
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+ +H + E R+ N+K+F T LVCTD A+RG+D VDHV++FDFP +
Sbjct: 403 FTVNYHGEVPAEQRVENLKKFKTEDGDCPT--LVCTDLAARGLDL-DVDHVIMFDFPLNS 459
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
+Y+ R GRTAR G GK V K + LA RI E RK L
Sbjct: 460 IDYLHRTGRTAR-MGAKGKVTSLVAKKDLLLATRIEEAIRKNESL 503
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 218/408 (53%), Gaps = 36/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG + ++ +++ +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q
Sbjct: 92 SFEELGLEEEVMAAMREAGISKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ 151
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR +E G+S PR V+L PT EL QV +S+S FRS +V+GG R +
Sbjct: 152 LLRHDEATLGMSLKPR-RPRAVVLCPTRELTEQVFRVAKSISHH-ARFRSTMVSGGTRLR 209
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQS 444
Q ++L VD+++ TPGR + IKEG + +++ +LDE D +F+ ED L
Sbjct: 210 PQEDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAP 269
Query: 445 LISSSPVTA----QYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDC 499
L + + Q + V+AT+ + + E F + RI+ +F +
Sbjct: 270 LKNRASKPGDQGFQTVLVSATMTKAVQKLIDEEFEGIVHLRTSTFQKRIATARHDF-IKL 328
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKET 557
SG + NK ALLQ++E S +K +VFCN + + R V++ L E
Sbjct: 329 SGSE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----TEN 372
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFP 616
++ + +H + E R+ N+ +F R++E LVCTD A+RG+D VDHV++FDFP
Sbjct: 373 QISTVNYHGEVPAEERVENLNKF---RNEEGDCPTLVCTDLAARGLDLE-VDHVIMFDFP 428
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
++ +Y+ R GRTAR G GK V K V LA RI + +K L
Sbjct: 429 KNSIDYLHRTGRTAR-MGAKGKVTSLVTKKDVPLATRIEDAMKKNESL 475
>gi|412989029|emb|CCO15620.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 140/420 (33%), Positives = 222/420 (52%), Gaps = 36/420 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVI 327
SF +L + E+L+ N P++IQ++A P + + G + +A +GSGKTLAYLLP++
Sbjct: 79 SFDDLSAD--VREALENLNLQSPTEIQSLAIPSIRDKGGNVCIASHTGSGKTLAYLLPIL 136
Query: 328 QRLRQEELQ--GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L++EE++ G + S PR +I++PT ELA Q+ + +SLS S ++ GG
Sbjct: 137 DALKREEIEADGDRLAKSRRPRALIVSPTRELAEQIFAVTKSLSHYA-KVSSRLILGGRP 195
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVAL 442
Q +NL+ VDV++ TPGR + +E L L + + +LDE D LF ED E L
Sbjct: 196 FALQKDNLEAPVDVVVGTPGRLVKHCEEKSLFLGSCKFVVLDEADTLFEAGFGEDVERLL 255
Query: 443 QSLIS----------SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGL 492
+ + + S + + V+AT+P + + PD + V +H+ +PGL
Sbjct: 256 RPVKNRNRGGDDGDESKKKSTTIVLVSATMPDRLKKLIDTSLPDVQYVKTQSLHKSAPGL 315
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552
+ V+ G ++ K FL + ++ + E+ + +VFCN + +C VE +
Sbjct: 316 KHNFVNVPGSEDKMK-----FL--EDIVVPMHERG--KRVMVFCNTVSSCVAVEKTMA-- 364
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG--VDHV 610
E V + +H + E R+ +MK F + ++ L LVCTD A+RG+DFAG VD+V
Sbjct: 365 ---ERNVNTVQYHGDMSSEERVESMKAFCDADPEDDNLILVCTDLAARGLDFAGVKVDNV 421
Query: 611 VLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
V FDFP +P +Y+ R GRTAR AG G + + LA I R G P+ D S+
Sbjct: 422 VNFDFPLNPVDYIHRSGRTAR-AGAKGMVTNLISKRDKVLANEIDVAVRLGRPIDDATSS 480
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 141/409 (34%), Positives = 220/409 (53%), Gaps = 38/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q
Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 170
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R +
Sbjct: 171 LLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGSRIR 228
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ ++
Sbjct: 229 PQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFLA 287
Query: 448 SSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVD 498
A Q + VTAT+ + + E F + R++ +F +
Sbjct: 288 PLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDF-IK 346
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKE 556
SG + NK ALLQ++E S +K +VFCN + + R V++ L E
Sbjct: 347 LSGSE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----TE 390
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDF 615
++ + +H + E R+ N+ +F R++E LVCTD A+RG+D VDHV++FDF
Sbjct: 391 NQISTVNYHGEVPAEERVENLNKF---RNEEGDCPTLVCTDLAARGLDL-DVDHVIMFDF 446
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
P + +Y+ R GRTAR G GK V K V+LA RI E +K L
Sbjct: 447 PSNSIDYLHRTGRTAR-MGAKGKVTSLVAKKDVTLATRIEEAMKKNESL 494
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 223/411 (54%), Gaps = 36/411 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ +++ P++IQ++ P V+E KS +L +GSGKTLAYLLP+ Q
Sbjct: 130 SFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQ 189
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ E+L G+ PR V+L PT EL+ QV +S+S FR +V+GG R +
Sbjct: 190 LLRRDEQLNGILLKPR-RPRAVVLCPTRELSEQVFRVAKSISHHA-RFRCTMVSGGGRLR 247
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +DV++ TPGR + I+EG + +++ +LDE D +F D F ++ I
Sbjct: 248 PQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFIG 306
Query: 447 -----SSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVD 498
+S P + Q + VTAT+ + N + E F + +H +IS +F +
Sbjct: 307 PLKNRASKPDGLGFQTILVTATMTKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDF-IK 365
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKE 556
+G + NK ALLQ++E S ++ +VFCN + + R V++ L E
Sbjct: 366 LAGSE-----------NKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFL-----GE 409
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
++ + +H + E R+ N+++F + LVCTD A+RG+D VDHVV+FDFP
Sbjct: 410 NQISAVNYHGEVPAEQRVENLRKFKSDGDDCP--TLVCTDLAARGLDL-DVDHVVMFDFP 466
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K + LA +I + RK L +
Sbjct: 467 LNSIDYLHRTGRTAR-MGAKGKVTSLVAKKDLDLASKIEDALRKNESLEAI 516
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 218/411 (53%), Gaps = 38/411 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ ++ +++ PS+IQ + P V+EGKS IL +GSGKTLAYLLP++Q
Sbjct: 122 FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181
Query: 330 LRQ-EELQG-LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ EEL G L K PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LRRDEELFGRLMKPR--RPRAVVLCPTRELSEQVFRVSKSISHHA-RFRSTMVSGGGRLR 238
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +D+++ TPGR + I+ G + +++ +LDE D +F D F ++ I
Sbjct: 239 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF-DHGFGPDIRKFIG 297
Query: 447 -------SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
S Q + VTAT+ + + E F + +H+ +
Sbjct: 298 PLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 357
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKET 557
SG + NK ALLQ++E S ++ +VFCN + + R V++ L E
Sbjct: 358 SGSE-----------NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL-----GEN 401
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFP 616
++ + +H + + R+ N+K+F +S +A LVCTD A+RG+D VDHV++FDFP
Sbjct: 402 QISTVNYHGEVPAQKRVENLKKF---KSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFP 457
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K LA RI E RK L +
Sbjct: 458 SNSIDYLHRTGRTAR-MGAKGKVTSLVGKKDNILATRIEEAIRKNESLESL 507
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 218/411 (53%), Gaps = 38/411 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ ++ +++ PS+IQ + P V+EGKS IL +GSGKTLAYLLP++Q
Sbjct: 122 FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181
Query: 330 LRQ-EELQG-LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ EEL G L K PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LRRDEELFGRLMKPR--RPRAVVLCPTRELSEQVFRVSKSISHHA-RFRSTMVSGGGRLR 238
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +D+++ TPGR + I+ G + +++ +LDE D +F D F ++ I
Sbjct: 239 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF-DHGFGPDIRKFIG 297
Query: 447 -------SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
S Q + VTAT+ + + E F + +H+ +
Sbjct: 298 PLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 357
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKET 557
SG + NK ALLQ++E S ++ +VFCN + + R V++ L E
Sbjct: 358 SGSE-----------NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL-----GEN 401
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFP 616
++ + +H + + R+ N+K+F +S +A LVCTD A+RG+D VDHV++FDFP
Sbjct: 402 QISTVNYHGEVPAQKRVENLKKF---KSDDADCPTLVCTDLAARGLDL-DVDHVIMFDFP 457
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K LA RI E RK L +
Sbjct: 458 SNSIDYLHRTGRTAR-MGAKGKVTSLVGKKDNILATRIEEAIRKNESLESL 507
>gi|308808924|ref|XP_003081772.1| RNA helicase (ISS) [Ostreococcus tauri]
gi|116060238|emb|CAL56297.1| RNA helicase (ISS), partial [Ostreococcus tauri]
Length = 181
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/181 (55%), Positives = 131/181 (72%), Gaps = 3/181 (1%)
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
S G+ E L+DCSG + D+ E+ F K ALLQL+E +T++FCNKI TCRK+EN
Sbjct: 2 SAGMLERLIDCSGGEIFDE--ESGFYRKFKALLQLLEVDRAQRTLLFCNKIETCRKIENF 59
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
LKR D+ + ++LP+HAAL +E + N+KEF TS SK + LVCTDRASRG+D + V+
Sbjct: 60 LKRADQDGDKYKILPYHAALSREQQQQNLKEFITSSSKTPHV-LVCTDRASRGLDASRVE 118
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
HV+LFDFPRDPSEYVRRVGRTARGA G G+ + V+G+QV LA+ IM RN +G P+ P
Sbjct: 119 HVILFDFPRDPSEYVRRVGRTARGAMGEGRVSVLVIGRQVRLAREIMRRNDRGDPVEATP 178
Query: 669 S 669
+
Sbjct: 179 T 179
>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 488
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 138/423 (32%), Positives = 217/423 (51%), Gaps = 38/423 (8%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+ D F LG D ++++++ F PS+IQ A P ++ G + + A +GSGKTL
Sbjct: 11 EADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTL 70
Query: 321 AYLLPVIQRLR----QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
AYL+P+IQ+L+ Q E G S + PR ++L PT ELA QVL + LS+ F
Sbjct: 71 AYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRS-CKFS 129
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
S V GG Q + L VD+++ TPGR + + G + ++DEVD + +
Sbjct: 130 SCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLT-Q 188
Query: 437 DFEVALQSL---ISSSPV---TAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRI 488
F ++ L + ++P AQ++FVTATL + L E + + V +H
Sbjct: 189 GFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHT 248
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVE 546
P L ++D G +K SAL+ + ++ +T+VFCN + +CR E
Sbjct: 249 LPSLRHVMIDIKGR------------DKMSALIDIAQQHLKDFKRTLVFCNTVKSCRAAE 296
Query: 547 NILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG 606
F +E V+ L +H + + R +N++ F ++K +LVCTD ASRG+D
Sbjct: 297 -----FGLREVDVKALSYHGEVPSDERSSNLERFKAGQAK----YLVCTDIASRGLDMPD 347
Query: 607 VDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
VDHVV+FDFP +P +Y+ R GRTAR G G+ + + + LA I + + G PL +
Sbjct: 348 VDHVVMFDFPLNPIDYLHRSGRTAR-MGAKGRVTSLLAKRDLVLAAAIEQAVQSGLPLDE 406
Query: 667 VPS 669
+ S
Sbjct: 407 LSS 409
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/410 (32%), Positives = 218/410 (53%), Gaps = 34/410 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG D ++ +++ P++IQ + P V++GKS +L +GSGKTLAYLLP++Q
Sbjct: 110 SFEGLGLGDEVMGAVREMGIEVPTEIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQ 169
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ E++ GL PR V+L PT EL+ QV +++S FR +V+GG R +
Sbjct: 170 LLRRDEQMNGLVLKPK-RPRAVVLCPTRELSEQVFRVAKAISHH-ARFRCTMVSGGGRLR 227
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q E+L +D+++ TPGR + I+EG + +++ +LDE D +F D F ++ +
Sbjct: 228 PQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMF-DRGFGPDIKKFLA 286
Query: 447 -----SSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+S P + Q + VTAT+ + N + E F + +H+ +
Sbjct: 287 PLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDFIKL 346
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKET 557
SG + NK +LLQ++E S ++ +VFCN + + R V++ L +E
Sbjct: 347 SGTE-----------NKLDSLLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL-----EEN 390
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
++ + +H + R+ N+ +F ++ LVCTD A+RG+D VDHV++FDFP
Sbjct: 391 QISTVNYHGEVPAAQRVENLNKFKSNNDDCP--TLVCTDLAARGLDL-DVDHVIMFDFPL 447
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ +Y+ R GRTAR G GK V K SLA +I E +K L +
Sbjct: 448 NSIDYLHRTGRTAR-MGAKGKITSLVTKKDYSLATKIEEAIKKNENLEAI 496
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 213/401 (53%), Gaps = 36/401 (8%)
Query: 282 SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSK 340
+++ +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q LR +E G+S
Sbjct: 132 AMREAGITKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQLLRHDEATLGMSM 191
Query: 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVL 400
PR V+L PT EL QV +S+S FRS +V+GG R K Q ++L VD++
Sbjct: 192 KPR-RPRAVVLCPTRELTEQVFRVAKSISHHAR-FRSTMVSGGTRLKPQEDSLNMPVDMV 249
Query: 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLI--SSSPVTA-- 453
+ TPGR + IKEG + +++ +LDE D +F+ ED L L SS P
Sbjct: 250 VGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLKNRSSKPGDQGL 309
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKTPETA 512
Q + V+AT+ + + E F + + RI+ +F + SG +
Sbjct: 310 QTILVSATMTKGVQKLIDEEFEGIEHLRTSTFQKRIATARHDF-IKLSGSE--------- 359
Query: 513 FLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQ 570
NK ALLQ++E S +K +VFCN + + R V++ L E + + +H +
Sbjct: 360 --NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----TENHISTVNYHGEVPA 412
Query: 571 ETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
E R+ N+ +F R++E LVCTD A+RG+D VDHV++FDFP++ +Y+ R GRT
Sbjct: 413 EERVENLNKF---RNEEGDCPTLVCTDLAARGLDLE-VDHVIMFDFPKNSIDYLHRTGRT 468
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
AR G GK + K V LA RI + +K L + ++
Sbjct: 469 AR-MGAKGKVTSLIAKKDVGLATRIEDAMKKNESLESLTTS 508
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 141/411 (34%), Positives = 221/411 (53%), Gaps = 45/411 (10%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 108 ESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 167
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 168 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVFRVAKSISHHAR-FRSTMVSGGSRI 225
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 226 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 284
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R++ +F +
Sbjct: 285 APLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDF-I 343
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRK 555
SG + NK ALLQ++E S +K +VFCN + + R V++ L
Sbjct: 344 KLSGSE-----------NKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFL-----T 387
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
E ++ + +H + E R+ N+ +F R++E LVCTD A+RG+D VDHV++FD
Sbjct: 388 ENQISTVNYHGEVPAEERVENLNKF---RNEEGDCPTLVCTDLAARGLDL-DVDHVIMFD 443
Query: 615 FPRDPSEYVRRVGRTAR-GAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
FP + +Y+ R GRTAR GA G K K V+LA RI E +K L
Sbjct: 444 FPSNSIDYLHRTGRTARMGAKGVAK-------KDVTLATRIEEAMKKNESL 487
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 220/417 (52%), Gaps = 36/417 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF ELG ++ + +++ + P+++Q MA P +++G++ ++A +GSGKTLAY+LP
Sbjct: 99 STQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLP 158
Query: 326 VIQR-----LRQEELQGLSKSTSGSPRVVILAPTAELASQVL--SNCRSLSKCG----VP 374
++Q LR++E++ + PR ++L PT EL QVL RSL K
Sbjct: 159 LVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSFCHHAR 218
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434
FRS +++GGFR + Q + L +D+++ TPGR + ++EG L +++ ++DE D +F
Sbjct: 219 FRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMF- 277
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEI-YNKLVEV-FPDCKVVMGPGMHRISPGL 492
D F L+ +I P+ + L + + KL++ FP + + +H+
Sbjct: 278 DRGFGPELKKII--DPLRNRALRNGSDFQTILSVQKLLDTEFPGIRHIFTSTLHKKVDTS 335
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILK 550
F G+ +NK AL+Q++E + S+ +VFC + +CR V++ L
Sbjct: 336 RHFFQKVPGN-----------INKLEALVQVLEPALAKGSRCMVFCRSVDSCRAVDHYLN 384
Query: 551 RFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHV 610
D V + +H + E R+ N+ +F + L+CTD A+RG+D VDHV
Sbjct: 385 EMD-----VHCVNYHGEVPAEDRIKNLAKFKIEDGEGPVPALICTDLAARGLDLQ-VDHV 438
Query: 611 VLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+ FDFP +Y+ R GRTAR G G+ V ++++LA R+ + R+ L V
Sbjct: 439 INFDFPSTSIDYLHRSGRTAR-MGLKGRVTSLVTKRELALANRLEDAMRRNETLEGV 494
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 211/408 (51%), Gaps = 30/408 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ ++K P++IQ + P +++ ++ +L +GSGKTLAY+LP++Q
Sbjct: 117 SFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQ 176
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR++E PR V+L PT EL+ QV +S+ FRS +V+GG R +
Sbjct: 177 LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHA-RFRSTMVSGGGRMRP 235
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVAL 442
Q ++L +D+++ TPGR + I++G + +++ +LDE D +F+ F L
Sbjct: 236 QEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPL 295
Query: 443 QSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
++ S S Q + VTAT+ + + E F + + +H+ + SG
Sbjct: 296 KNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSG 355
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETRV 559
+ NK ALLQ++E S ++ +VFCN + + R ++ L E ++
Sbjct: 356 SE-----------NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFL-----AENQI 399
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+ +H + E R+ N+ +F + LVCTD A+RG+D VDHV++FDFP +
Sbjct: 400 STVNYHGEVPAEQRVENLNKFKSDDGDCPT--LVCTDLAARGLDL-DVDHVIMFDFPLNS 456
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+Y+ R GRTAR G GK V K LA RI E RK L +
Sbjct: 457 IDYLHRTGRTAR-MGAKGKVTSLVARKDQQLAARIEEAMRKNESLESL 503
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 200/383 (52%), Gaps = 30/383 (7%)
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P++IQ + P V+EG+S +L +GSGKTLAY+LP++Q LR++E PR V+
Sbjct: 12 PTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQLLRRDEALSGVLMKPRRPRAVV 71
Query: 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
L PT EL+ QV +S+S FRS +V+GG R + Q ++L +D+++ TPGR +
Sbjct: 72 LCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNIPIDMVVGTPGRVLQH 130
Query: 411 IKEGILQLINLRCAILDEVDILFND------EDFEVALQSLISSSPVTA-QYLFVTATLP 463
I+EG + ++ +LDE D +F+ F L++ S S Q + VTAT+
Sbjct: 131 IEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKSDDQGFQTVLVTATMT 190
Query: 464 VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
+ + E F + +H+ + SG + NK ALLQ+
Sbjct: 191 KAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSE-----------NKLEALLQV 239
Query: 524 IEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
+E S +K +VFCN + + R V++ L E ++ + +H + E R+ N+K+F
Sbjct: 240 LEPSLAKGNKVMVFCNTLNSSRAVDHFL-----GENQIFTVNYHGEVPAEQRVENLKKFK 294
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFI 641
T LVCTD A+RG+D VDHV++FDFP + +Y+ R GRTAR G GK
Sbjct: 295 TEDGDCPT--LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR-MGAKGKVTS 350
Query: 642 FVVGKQVSLAQRIMERNRKGHPL 664
V K + LA RI E RK L
Sbjct: 351 LVAKKDLLLATRIEEAIRKNESL 373
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 33/374 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+EL SD ++ +++ P++IQ + P V++GKS +L +GSGKTLAY+LP++Q
Sbjct: 122 SFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKSVVLGSHTGSGKTLAYMLPLVQ 181
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR++E L GL PR ++L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LLRRDEALLGLLMKPR-RPRAIVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRMR 239
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +D+++ TPGR + I++G + +++ +LDE D +F D F ++ +
Sbjct: 240 PQEDSLNSPIDMIVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFLG 298
Query: 447 -----SSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+S P + Q + VTAT+ + + E F + +H+ +
Sbjct: 299 PLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 358
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKET 557
SG + NK ALLQ++E S ++ +VFCN + + R V++ L E
Sbjct: 359 SGSE-----------NKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFL-----AEN 402
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
++ + +H + E R+ N+++F + LVCTD A+RG+D VDHVV+FDFP
Sbjct: 403 QISTVNYHGEVPAEQRVENLQKFKSDDGDCPT--LVCTDLAARGLDL-DVDHVVMFDFPL 459
Query: 618 DPSEYVRRVGRTAR 631
+ +Y+ R GRTAR
Sbjct: 460 NSIDYLHRTGRTAR 473
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 202/376 (53%), Gaps = 33/376 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRL----RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
Q L R++E K+ PR V+L PT EL+ QV C FRS++V+GG
Sbjct: 172 QVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV---CLHQDYHHARFRSILVSGG 228
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
R + Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F D F ++
Sbjct: 229 SRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMF-DRGFGPEIR 287
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLV-EVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ +P+ V + + KLV E F + + +H+ + SG
Sbjct: 288 KFL--APLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 345
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+ +K ALLQ++E S SK +VFCN + + R V++ L E ++
Sbjct: 346 E-----------DKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYL-----SENQIS 389
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
+ +H + E R+ N+K+F LVCTD A+RG+D VDHVV+FDFP++
Sbjct: 390 TVNYHGEVPAEQRVENLKKFKDEEGDCPT--LVCTDLAARGLDL-DVDHVVMFDFPKNSI 446
Query: 621 EYVRRVGRTAR-GAGG 635
+Y+ R GRTAR GA G
Sbjct: 447 DYLHRTGRTARMGAKG 462
>gi|393723703|ref|ZP_10343630.1| putative helicase [Sphingomonas sp. PAMC 26605]
Length = 552
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/389 (32%), Positives = 194/389 (49%), Gaps = 36/389 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRTLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P I+ ++++LV + ++
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLANPKTIEVARPATANIN--IKQWLVHVTAAKKR 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
DK L++L+ + V I+F N+ T R++ L+R + + H
Sbjct: 231 DK------------LIELLRQEDVKTGIIFSNRKTTVRELNKALQRAGFASSEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
++Q R+A + F + LV +D A+RGID GV HV FD P P +YV R
Sbjct: 274 GDMEQSQRIAELDRFKKGEAS----ILVASDVAARGIDVKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG TG AF F V Q I
Sbjct: 330 IGRTGR-AGATGIAFTFATPDDVENIQNI 357
>gi|449017358|dbj|BAM80760.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 566
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 137/416 (32%), Positives = 208/416 (50%), Gaps = 46/416 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +L P+ IQ A P ++ G S I+ +GSGKTLAYLLP++Q
Sbjct: 81 SFASLGVFPELVTALDAVGIQTPTAIQTRAVPAILGGASVIIGSATGSGKTLAYLLPIVQ 140
Query: 329 RLRQEELQGLSKSTS-----------------GSPRVVILAPTAELASQVLSNCRSLSKC 371
RL+ EE Q +S+ + G+PR +++ PT ELA QVL C+ LS
Sbjct: 141 RLKSEEQQVVSEMQTEEAAEMMRRGRHPLRRPGAPRALVITPTRELAEQVLGVCKHLSHY 200
Query: 372 GVPFRSMVVTGGFR-QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
+ R+ G R + QLE ++ VD+LI T GR + L+ E +++L +++ +LDEVD
Sbjct: 201 -IKIRAASGLGVRRIVRAQLE--EQPVDILITTSGRLLQLLDEQLIRLRSVQTVVLDEVD 257
Query: 431 ILFNDE-DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS 489
L DE F ++ ++ + T Q++ V AT P E P K + +H+
Sbjct: 258 TLLLDEGGFHDDIRQIMGKARNTQQFIAVGATHPTAAQKLYREFCPGAKPIT-VDLHQTP 316
Query: 490 PGLEEFLVDCSGDQESDKTPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
L + + SG + KT E L +KK+ LL + +VFCN + +CR
Sbjct: 317 SNLRQRFIRVSG--ANGKTDEILALLKEETHKKTRLLS------GGRVMVFCNTVDSCRF 368
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
++ L +E +H + ++ R + F + R LVCTD A+RG+D+
Sbjct: 369 LDYFL-----QEHGFTTANYHGDIPKDRREEEFQAFV----RGERQILVCTDIAARGLDY 419
Query: 605 -AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659
+D V+LFDFPR +Y+ R GRTARG GTG V K + LA I + R
Sbjct: 420 DHKIDQVILFDFPRTAIDYLHRAGRTARGPSGTGTVTSLVTKKDLPLASFIEDATR 475
>gi|307105623|gb|EFN53871.1| hypothetical protein CHLNCDRAFT_58353 [Chlorella variabilis]
Length = 572
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 213/420 (50%), Gaps = 39/420 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC--ILADQSGSGKTLAYLLPV 326
+F +LG S + +L + P++IQA A P +++ ++ +LA +GSGKTLAYLLP+
Sbjct: 63 TFTQLGVSQELQAALAEKGISEPTEIQAAAVPALLQHRAADFLLASHTGSGKTLAYLLPL 122
Query: 327 IQRLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+Q L++ E+L+G + PR ++L PT EL Q+L ++LS FRS VV GG
Sbjct: 123 VQLLKEGEQLRGAAARPR-RPRALVLGPTRELTDQILRVAKALSHT-AKFRSSVVNGGGD 180
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF--EV-AL 442
Q E L+ +DVL+ TP R M ++ L ++ +LDE D +F D F EV A+
Sbjct: 181 MGGQREALERPLDVLVGTPQRVMQHAEKSHLYYGDVEVVVLDEADTMF-DRGFGPEVKAI 239
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ + A+ + V+AT+ + + E FP + V +HR G V
Sbjct: 240 LAAVRGKEQPARCVLVSATMSKAVGRLIDEEFPGMRRVETSSLHRGVAGARHAFV----- 294
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVS----------KTIVFCNKIVTCRKVENILKRF 552
P A NK LLQ + + + +VFCN + +CR ++ L
Sbjct: 295 ------PMPAAANKLDLLLQASRRGGLGVVEGEHQRGKRVMVFCNTLASCRAADHFL--- 345
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSR--SKEARLFLVCTDRASRGIDFAG-VDH 609
E ++ +H + + R A M+ F S E LVCTD A+RG+D G VDH
Sbjct: 346 --TERGLQTACYHGDVPPDERRAAMQSFAGGDGVSGERPPLLVCTDLAARGLDMPGRVDH 403
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
VV FDFP +P +Y+ R GRTAR AG TGK V LA+RI E ++G PL + S
Sbjct: 404 VVNFDFPLNPIDYLHRTGRTAR-AGATGKITSLVAKGDRVLAERIEEALQRGLPLDALSS 462
>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP6]
gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP6]
Length = 427
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 203/402 (50%), Gaps = 36/402 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L D ++ ++ + + P+ IQ +A PP++EGK + Q+G+GKT A++LP++Q
Sbjct: 2 SFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ E S GSPRV++LAPT ELA+Q+ + + K + FR +V+ GG RQ
Sbjct: 62 RMSAER----RASRPGSPRVLVLAPTRELAAQIGQSFATYGKF-LRFRQLVIFGGVRQGP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVD+L+ATPGR + L+ +G ++L + +LDE+D + D F ++ ++S+
Sbjct: 117 QVNMLSRGVDILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRML-DMGFIRDVKRIVSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P LF +ATL E + D P + SP C+ D +
Sbjct: 176 LPEKHSSLFFSATLTRETGELAQSLLND------PVHVQASPSA------CTLDSIDQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K S LL L+ K + + +VF KV +L + R++ H
Sbjct: 224 FFVDQNSKNSLLLDLLLKEDMKRVLVFARTKHRADKVAQMLSK-----NRIQSDAIHGNK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R M+ F + R + LV TD A+RGID + HVV +D P +P YV R+GR
Sbjct: 279 SQNQRTKTMERFRSGRIR----VLVATDIAARGIDIDDITHVVNYDLPNEPESYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLA--------QRIMERNRKGH 662
T R AG +G AF F ++ S ++I ER K H
Sbjct: 335 TGR-AGASGNAFSFCSAEERSFLKDIERLTREKIEEREHKYH 375
>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase [Sphingopyxis alaskensis RB2256]
gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 458
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 131/404 (32%), Positives = 197/404 (48%), Gaps = 36/404 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++ ++ + P+ IQA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +IL PT ELA+QV N K ++++ GG + Q
Sbjct: 63 LAHGRARALM------PRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++++ +
Sbjct: 116 IKALEKGVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRML-DMGFIPDIENICTKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I KL + F P V P + +E+F+V
Sbjct: 175 PANRQTLLFSATMPPPI-KKLADKFLSNPKTIEVARPASR--NENIEQFVV--------- 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+T+ K+ L LIE +S IVFCN+ T R++ L+R + R H
Sbjct: 223 ---KTSERGKRDTLRGLIEAEDLSTAIVFCNRKTTVRELAKSLQR-----SGYRAGEIHG 274
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+DQ +R+A + F LV +D A+RG+D GV HV FD P P +YV R+
Sbjct: 275 DMDQSSRIAELDRFKAGTIN----ILVASDVAARGLDVKGVSHVFNFDAPWHPDDYVHRI 330
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
GRT R AG G+AF V I + P+H +A
Sbjct: 331 GRTGR-AGAQGRAFTLVTPSDDEAIDNIQKLTGYNIPVHGTATA 373
>gi|393719361|ref|ZP_10339288.1| putative helicase [Sphingomonas echinoides ATCC 14820]
Length = 486
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 132/408 (32%), Positives = 196/408 (48%), Gaps = 43/408 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P V+ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSVLMGKDLVAIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P ++ ++++LV+ S +
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLDNPKTIEVARPATANVN--IKQWLVNVSAAK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ L+ L+ V I+F N+ T R + L+R + H
Sbjct: 229 ----------KRDTLISLLRSEDVQTGIIFSNRKTTVRDLNKALQRAGFASGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
++Q R+A + F K LV +D A+RGID GV HV +D P P +YV R
Sbjct: 274 GDMEQAQRIAELDRFKKGEIK----ILVASDVAARGIDIKGVSHVFNYDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI-------MERNRKGHPLHD 666
+GRT R AG TG AF F Q I +ER G P+ D
Sbjct: 330 IGRTGR-AGATGIAFTFATPDDAENIQNIEKLTGLKIERYETGAPVAD 376
>gi|404252844|ref|ZP_10956812.1| putative helicase [Sphingomonas sp. PAMC 26621]
Length = 492
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 197/405 (48%), Gaps = 43/405 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P ++ ++++LV
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLDNPKTIEVARPATANVN--IKQWLV-------- 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
P TA K+ L++L+ V I+F N+ T R++ L+R + + H
Sbjct: 223 ---PVTA-AKKRDTLMKLLRSEDVQTGIIFSNRKTTVRELNKALQRAGFASSEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
++Q R+A + F K LV +D A+RGID GV HV FD P P +YV R
Sbjct: 274 GDMEQSQRIAELDRFKKGEVK----ILVASDVAARGIDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI-------MERNRKGHP 663
+GRT R AG TG AF F Q I +ER G P
Sbjct: 330 IGRTGR-AGATGIAFTFATPDDAENIQNIEKLTGLKIERYTTGDP 373
>gi|395492457|ref|ZP_10424036.1| putative helicase [Sphingomonas sp. PAMC 26617]
Length = 492
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 197/405 (48%), Gaps = 43/405 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P ++ ++++LV
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLDNPKTIEVARPATANVN--IKQWLV-------- 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
P TA K+ L++L+ V I+F N+ T R++ L+R + + H
Sbjct: 223 ---PVTA-AKKRDTLMKLLRSEDVQTGIIFSNRKTTVRELNKALQRAGFASSEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
++Q R+A + F K LV +D A+RGID GV HV FD P P +YV R
Sbjct: 274 GDMEQSQRIAELDRFKKGEVK----ILVASDVAARGIDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI-------MERNRKGHP 663
+GRT R AG TG AF F Q I +ER G P
Sbjct: 330 IGRTGR-AGATGIAFTFATPDDAENIQNIEKLTGLKIERYTTGDP 373
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 203/379 (53%), Gaps = 33/379 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF ELG ++ + +++ + P+++Q MA P +++G++ ++A +GSGKTLAY+LP
Sbjct: 99 STQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLP 158
Query: 326 VIQR-----LRQEELQGLSKSTSGSPRVVILAPTAELASQVL--SNCRSLSKCG--VPFR 376
++Q LR++E++ + PR ++L PT EL QVL RSL K FR
Sbjct: 159 LVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSHHARFR 218
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
S +++GGFR + Q + L +D+++ TPGR + ++EG L +++ ++DE D +F D
Sbjct: 219 SAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMF-DR 277
Query: 437 DFEVALQSLISSSPVTAQYLFVTATLPVEI-YNKLVEV-FPDCKVVMGPGMHRISPGLEE 494
F L+ +I P+ + L + + KL++ FP + + +H+
Sbjct: 278 GFGPELKKII--DPLRNRALRNGSDFQTILSVQKLLDTEFPGIRHIFTSTLHKKVDTSRH 335
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTCRKVENILKRF 552
F G+ +NK AL+Q++E + S+ +VFC + +CR V++ L
Sbjct: 336 FFQKVPGN-----------INKLEALVQVLEPALAKGSRCMVFCRSVDSCRAVDHYLNEM 384
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
D V + +H + E R+ N+ +F + L+CTD A+RG+D VDHV+
Sbjct: 385 D-----VHCVNYHGEVPAEDRIKNLAKFKIEDGEGPVPALICTDLAARGLDLQ-VDHVIN 438
Query: 613 FDFPRDPSEYVRRVGRTAR 631
FDFP +Y+ R GRTAR
Sbjct: 439 FDFPSTSIDYLHRSGRTAR 457
>gi|398385616|ref|ZP_10543635.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397720142|gb|EJK80702.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 469
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 192/389 (49%), Gaps = 36/389 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVNEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPTQRQTLLFSATMP-PVIKKLADRFLDNPKSIEVARPAT--ASTNITQHLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL ++ V+ ++FCN+ T R++ L+R+ K + H
Sbjct: 229 ----------KREALRAMLAAEDVTSAVIFCNRKTTVRELNKSLQRYGFKSGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ +R+A ++ F LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDIDQSSRIAELERFRDGTVN----ILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG G A+ FV + I
Sbjct: 330 IGRTGR-AGAKGVAYTFVTSEDAEAIDNI 357
>gi|393770590|ref|ZP_10359069.1| DEAD/DEAH box helicase-like protein [Novosphingobium sp. Rr 2-17]
gi|392723937|gb|EIZ81323.1| DEAD/DEAH box helicase-like protein [Novosphingobium sp. Rr 2-17]
Length = 502
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 189/380 (49%), Gaps = 38/380 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 NFADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 62 VLAHGRRRAL------MPRSLILEPTRELAAQVAENFEKYGK-NHNLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ+GVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QVKALQDGVDVLIATPGRLMDLFERGKIMLSGCELLVIDEADRML-DMGFIPDIETICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P + +S + V
Sbjct: 174 LPTNRQTLLFSATMP-PVIKKLADRFLSNPKYIEVARPASNNLSIVQHKVAVSSR----- 227
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK+ AL ++ V+ IVF N+ T R++ L K V H
Sbjct: 228 ---------NKREALRTILRTDNVTTAIVFANRKTTVRELAKSL-----KTNGFSVGEIH 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVC-TDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+DQ R A ++ F K + ++C +D A+RG+D GV HV FD P P +YV
Sbjct: 274 GDMDQSARNAELERF-----KAGEISILCASDVAARGLDVKGVSHVFNFDTPWHPDDYVH 328
Query: 625 RVGRTARGAGGTGKAFIFVV 644
R+GRT RG G G+AF FV
Sbjct: 329 RIGRTGRG-GAMGRAFTFVT 347
>gi|365897083|ref|ZP_09435116.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
gi|365422196|emb|CCE07658.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
Length = 503
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 198/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N+ P+ IQA P +EG+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADALQRALKDENYQTPTPIQAQTIPLALEGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL LQ +K + RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RL----LQNRTKPQPKTARVLVLSPTRELSGQILDSFHAYGRH-IRLSSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+VL+ATPGR + LI+ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRTIMPGVEVLVATPGRLLDLIQGNALKLTSVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +I + D +V + P V + ++ S +
Sbjct: 177 LPHKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTAERISQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL+++ PV + +VF T + +++ ++ + + H
Sbjct: 224 AIQVDHTAKSAMLTQLLKEEPVDRALVFTR---TKHGADKVVRGLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F RS E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RSGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 335 RTAR-AGAEGVAISLVAGAEELGYLRDIER 363
>gi|334142403|ref|YP_004535611.1| DEAD/DEAH box helicase [Novosphingobium sp. PP1Y]
gi|359401233|ref|ZP_09194203.1| DEAD/DEAH box helicase-like protein [Novosphingobium
pentaromativorans US6-1]
gi|333940435|emb|CCA93793.1| DEAD/DEAH box helicase-like [Novosphingobium sp. PP1Y]
gi|357597304|gb|EHJ59052.1| DEAD/DEAH box helicase-like protein [Novosphingobium
pentaromativorans US6-1]
Length = 462
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 192/402 (47%), Gaps = 36/402 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S+ ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 NFADLGLSEELLQAVEAAGYTEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 62 ILAHGRRRALM------PRSLILEPTRELAAQVAENFEKYGKNH-DLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QVKALTEGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRML-DMGFIPDIENICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q + +AT+P I KL + F P V P I+ + V
Sbjct: 174 LPTNRQTMLFSATMPPPI-KKLSDRFLSNPKYIEVARPATANINIVQHKVAVTAR----- 227
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ L L+ VS IVFCN+ T R++ LK + H
Sbjct: 228 ---------KKREVLRHLLRTDNVSTAIVFCNRKTTVRELAKSLKGHGFGAGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ RLA + F + LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDMDQPARLAELDRFKSGDVN----ILVASDVAARGLDVKGVSHVFNFDTPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
+GRT RG G +G+AF FV + + + PL D+
Sbjct: 330 IGRTGRG-GASGRAFTFVAPEDAEAIDNVEKLTGHKIPLFDL 370
>gi|427407716|ref|ZP_18897918.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
gi|425713679|gb|EKU76691.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
Length = 463
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 190/381 (49%), Gaps = 36/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLDNPKSIEVARPAT--ASTNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL ++E V ++FCN+ T R++ L+R K + H
Sbjct: 229 ----------KREALRAMLEAEEVQSAVIFCNRKTTVRELNKSLQRHGFKSGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ +R+A ++ F LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDIDQASRIAELERFRDGSVN----ILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGK 646
+GRT R AG G A+ FV +
Sbjct: 330 IGRTGR-AGAKGVAYTFVAAE 349
>gi|381201506|ref|ZP_09908631.1| DEAD/DEAH box helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 463
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 191/389 (49%), Gaps = 36/389 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLDNPKSIEVARPAT--ASTNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL ++E V ++FCN+ T R++ L+R K + H
Sbjct: 229 ----------KREALRAMLEAEEVQSAVIFCNRKTTVRELNKSLQRHGFKSGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ +R+A ++ F LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDIDQASRIAELERFRDGSVN----ILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG G A+ FV + I
Sbjct: 330 IGRTGR-AGAKGVAYTFVAAEDAEAIDNI 357
>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 481
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 131/378 (34%), Positives = 190/378 (50%), Gaps = 38/378 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++S+ + P+ IQA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 24 FADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPMIDV 83
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +IL PT ELA+QV N K R ++ GG + Q
Sbjct: 84 LAHGRRRALM------PRSLILEPTRELAAQVAENFEKYGK-NHDLRMALLIGGVQMGDQ 136
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L +GVDVLIATPGR M L + G + L ++DE D + D F ++S+ S
Sbjct: 137 VKALSDGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRML-DMGFIPDIESICSKL 195
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q L +AT+P I KL + F P V P I+ + + V C
Sbjct: 196 PTTRQTLLFSATMPPPI-KKLADRFLSNPKYIEVARPASANIN--IVQHKVAC------- 245
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
A +K+ L L+ VS IVF N+ T R + LKR + H
Sbjct: 246 -----ASRDKRKVLRHLLRTDNVSTAIVFANRKTTVRDLAKSLKRHGFAAGEI-----HG 295
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVC-TDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ RLA ++ F K+ ++ ++C +D A+RG+D GV HV FD P P +YV R
Sbjct: 296 DMDQPQRLAELQRF-----KDGQINILCASDVAARGLDVKGVSHVFNFDTPWHPDDYVHR 350
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT RG G +G+AF V
Sbjct: 351 IGRTGRG-GASGRAFTLV 367
>gi|357977206|ref|ZP_09141177.1| DEAD/DEAH box helicase [Sphingomonas sp. KC8]
Length = 465
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 193/395 (48%), Gaps = 30/395 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ IQ A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLRAIADSGYSEPTPIQEQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 62 ILAH------GRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGTNMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIAALEKGVDVLIATPGRLMDLFQRGKILLTGCSLLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + K + + + +E+FLV+CS
Sbjct: 174 LPAQRQTLLFSATMPAPIKKLADRFLTNPKQIEVARVGAANASIEQFLVECSSR------ 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L L+ + I+F N+ T R + LK + T++ H +
Sbjct: 228 ------GKRDVLRDLLRAEDMHTAIIFSNRKTTVRDLSTALKGNGFRATQI-----HGDM 276
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q R+ + F +S E + LV +D A+RG+D GV HV FD P P +YV R+GR
Sbjct: 277 EQSERVRELDRF---KSGEINI-LVASDVAARGLDVKGVSHVFNFDVPWHPDDYVHRIGR 332
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663
T R AG TGKA+ V + + I + ++ P
Sbjct: 333 TGR-AGATGKAYTLVTPEDAEAVENIEKLTQQKIP 366
>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 479
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 127/403 (31%), Positives = 200/403 (49%), Gaps = 28/403 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++++L +Q F RP+ IQA A P ++EG+ I Q+G+GKT A+ LP++
Sbjct: 4 FRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHA 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + G RV++L+PT ELASQ+ R+L + VV GG Q
Sbjct: 64 L----ITHPTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHA-LSVAVVFGGVSPGAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ G+D+L+ATPGR + I G+ L +LDEVD + D F ++ ++ +
Sbjct: 119 IKALQRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQML-DLGFVKPIRRIVGTL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI ++ D V ++P V + D+ +
Sbjct: 178 PAKRQSLFFSATMPGEIRKLATDLLKDPVTVS------VTP------VAKTADRVRQQVV 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K+ L++L + +++TIVF T R + + + ++ + H
Sbjct: 226 FVETHRKRDILIELFGDAMMTRTIVFTR---TKRGADKVTQHLEKAG--IPAFAIHGNKS 280
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R ++ F RS R LV TD A+RGID GV HVV ++ P P YV R+GRT
Sbjct: 281 QSQRERSLLAF---RSGHVRA-LVATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRT 336
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
AR AG G A G + + I + R P+ D S+ +
Sbjct: 337 AR-AGAEGIAISLCDGTERDYLRNIEKLTRLNLPVEDRRSSLQ 378
>gi|347529289|ref|YP_004836037.1| putative helicase [Sphingobium sp. SYK-6]
gi|345137971|dbj|BAK67580.1| putative helicase [Sphingobium sp. SYK-6]
Length = 472
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 192/378 (50%), Gaps = 36/378 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + + IQA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSEELLKAVEEAGYSEATPIQAQAIPSVLMMRDIIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q +S + PR +IL PT ELA+QV N K ++++ GG Q
Sbjct: 63 LAQ------GRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++++ +
Sbjct: 116 VKALEKGVDVLIATPGRLMDLFERGNILLTGCSLLVIDEADRML-DMGFIPDIENICTKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I KL + F P V P S + + LV
Sbjct: 175 PANRQTLLFSATMPGPI-KKLADKFLTNPKSIEVARPAT--ASANIAQMLVPVEER---- 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K+ L L+ K V+ I+FCN+ R++ L+R K + H
Sbjct: 228 --------GKREMLRTLLGKEDVNTAIIFCNRKTMVRELNKSLRRHGFKSGEI-----HG 274
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+DQ R+A ++ F +S E L LV +D A+RG+D GV HV FD P P +YV R+
Sbjct: 275 DIDQSARIAELERF---KSGEINL-LVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHRI 330
Query: 627 GRTARGAGGTGKAFIFVV 644
GRT R AG TGKAF FV
Sbjct: 331 GRTGR-AGATGKAFTFVT 347
>gi|334343993|ref|YP_004552545.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334100615|gb|AEG48039.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 454
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 185/380 (48%), Gaps = 36/380 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYH-KLNMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QLKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLSNPKSIEVARPAT--ASTNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL ++E V ++FCN+ T R + L+R K + H
Sbjct: 229 ----------KREALRAMLEAEDVLSAVIFCNRKTTVRDLNKSLQRHGFKSGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ R+A ++ F LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDIDQSARIAELERFRAGSVN----ILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVG 645
+GRT R AG G A+ FV
Sbjct: 330 IGRTGR-AGAKGVAYTFVTA 348
>gi|410671946|ref|YP_006924317.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171074|gb|AFV24949.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 408
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 205/394 (52%), Gaps = 36/394 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L D + +L ++ ++ P+ IQ + P +++GK I Q+G+GKT A++LP++QR
Sbjct: 3 FKDLNLIDPLQRALTKEGYIEPTPIQVQSIPQLLKGKDLIGIAQTGTGKTAAFVLPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +T G PRV++LAPT ELA+Q+ + + + F+ VV GG Q Q
Sbjct: 63 MHEKH----KHTTPGFPRVLVLAPTRELAAQIGDSFAAYGHF-LHFKHTVVFGGVSQVPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++ +GVD+L+ATPGR + L+ +GI++L + +LDE D + D F + ++S
Sbjct: 118 FKSITKGVDILVATPGRLLDLMDQGIVKLSGVEFFVLDEADRML-DMGFIKDVNRIVSML 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q LF +AT+ +I + D +V + P + RI + F V DQE
Sbjct: 177 PHKRQSLFFSATMSPQISELTRRLLTDPVRVEVTPQATTVERIEQKV--FFV----DQE- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK + LL L+++ ++ +VF KV L + RV H
Sbjct: 230 ---------NKDALLLSLLQQDHLNCVLVFTRTKHRANKVAQTLNK-----NRVGADAIH 275
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R M+ F R+ E ++ LV TD A+RGID + HV+ +D P +P YV R
Sbjct: 276 GNKSQAHRTRVMESF---RAGELQV-LVATDIAARGIDIEDISHVINYDLPNEPESYVHR 331
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659
+GRTAR AG G A+ F + S + I + R
Sbjct: 332 IGRTAR-AGAEGTAYSFCAADERSFLRSIEKLTR 364
>gi|390168903|ref|ZP_10220852.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
gi|389588492|gb|EIM66538.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
Length = 445
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 186/380 (48%), Gaps = 36/380 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVSEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYH-KLNMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QLKALEKGVDVLIATPGRLMDLFQRGKILLNGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P I KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMPAPI-KKLADRFLSNPKSIEVARPATA--STNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL ++E V ++FCN+ T R++ L+R + + H
Sbjct: 229 ----------KREALRAMLEAEDVLSAVIFCNRKTTVRELNKSLQRHGFRSGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ R+A ++ F LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDIDQSARIAELERFRAGTVN----ILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVG 645
+GRT R AG G A+ FV
Sbjct: 330 IGRTGR-AGAKGVAYTFVTA 348
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 202/413 (48%), Gaps = 39/413 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL++ STS SP R +IL+PT ELA Q+ N + +K +P RS VV GG
Sbjct: 62 RLKK------FASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY-LPLRSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + + + +QL + +LDE D + D F ++
Sbjct: 115 MNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRML-DMGFINDIR 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P T Q L +AT EI E D + V + + +E+ + +
Sbjct: 174 KILGMLPRTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQR 233
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K+ L LI + + + IVFC ++ ++ LKR +
Sbjct: 234 ------------KRYLLSHLIRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAI---- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q RL + F K LV TD A+RG+D + + +VV F+ P P +YV
Sbjct: 278 -HGDKAQGARLETLTAFKNGEVK----VLVATDVAARGLDISELPYVVNFELPNAPEDYV 332
Query: 624 RRVGRTARGAGGTGKAFIFV---VGKQVSLAQRIMERNRKGHPLHDV-PSAFE 672
R+GRT R AG +G A + GKQ+ +++ + K P+ PS E
Sbjct: 333 HRIGRTGR-AGASGVAISLMGQDEGKQLEAIEKLTRQTLKPQPVSGFWPSWLE 384
>gi|384253618|gb|EIE27092.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 372
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 198/391 (50%), Gaps = 36/391 (9%)
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
N P++IQ F V+ G +LA +GSGKTLAYLLP L+ +Q K P
Sbjct: 2 NLTSPTEIQVSKF--VLHGGDVLLASHTGSGKTLAYLLP----LKDGSVQAKPKR----P 51
Query: 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
R +IL PT EL Q+LS +S+S FRS + GG Q E L+ +D+L+ TP +
Sbjct: 52 RAIILGPTRELTDQILSVAKSISH-KAKFRSACINGGGSMGQQKEALERPLDILVGTPQK 110
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS---SSPVTAQYLFVTATLP 463
+ ++G L +++ +LDE D +F D+ F +++++ S P A + V ATL
Sbjct: 111 LVQHAEKGHLYWGDVQYVVLDEADTMF-DKGFGPEVRAVLGPLRSKPQPASTILVVATLS 169
Query: 464 VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
+ L FP+ K V +HR G + P A NK L Q+
Sbjct: 170 QAVRKLLDTEFPNLKRVETSSLHRGVVGARHSFL---------AAPPNA--NKLDVLSQI 218
Query: 524 I--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
+ E + + +VFCN + +CR E+ L+ E V L +H + + R + +F+
Sbjct: 219 VTGEAARGKRLMVFCNTLDSCRATEHHLR-----ERGVPTLCYHGDVPLDGRREAIAQFS 273
Query: 582 TSR-SKEARLFLVCTDRASRGIDF-AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639
S + + LVCTD A+RG+D A VDHVV FDFP +P +Y+ R GRTAR AG +G+
Sbjct: 274 NSEPGPDGQPVLVCTDLAARGLDMPAAVDHVVNFDFPLNPVDYIHRTGRTAR-AGASGRI 332
Query: 640 FIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
V + LA RI E + PL ++ +A
Sbjct: 333 TSIVAKRDAVLAGRIKEALEQNRPLDELSAA 363
>gi|209881955|ref|XP_002142415.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium muris
RN66]
gi|209558021|gb|EEA08066.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
muris RN66]
Length = 506
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 205/404 (50%), Gaps = 39/404 (9%)
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
DFFS SF++ D + +LK N ++IQA + P ++EGK + ++GSGKTLA
Sbjct: 7 ADFFSNVSFEQSAICDQLKRALKDMNITTMTEIQAKSIPRILEGKDVLGTAKTGSGKTLA 66
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+L+P + L E L ++ +G V++++PT EL+ Q+ CR L K +P +V
Sbjct: 67 FLVPAVNLLYNVEF--LPRNGTG---VIVISPTRELSLQIYEVCRELCKY-LPQTHGLVI 120
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG ++ + + L +GV++LIATPGR + L Q NL I+DE D + + FE
Sbjct: 121 GGANRRNEADKLNKGVNILIATPGRLLDHLQNTKGFQYGNLLSLIIDEADRIL-EIGFEE 179
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVE------VFPDCKVVMGPGMHRISPGLEE 494
+ +I PV Q +AT ++ + LV V CK GLE+
Sbjct: 180 EMNQIIKLLPVKRQTSLFSATQTTKVAD-LVRLSLRNPVLIKCKT---SNTAATVSGLEQ 235
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
V S ++ FL L ++K+ +K +VF + ++ + E + D
Sbjct: 236 GYVIASANER--------FL----LLYTFLKKNRENKVMVFFSSCMSTKFHEELFNYVDL 283
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
+ + H Q +R+ EF +S + L+CTD A+RG+D VD ++ +D
Sbjct: 284 SCSSI-----HGKKKQSSRMQTYYEFCSSE----KGLLLCTDVAARGLDIPNVDWIIQYD 334
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
P DP EY+ RVGRTARGA GTGKA +F++ +++ Q + + N
Sbjct: 335 PPDDPKEYIHRVGRTARGANGTGKALLFLLPEEIQFLQYLKKMN 378
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 202/413 (48%), Gaps = 39/413 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL++ STS SP R +IL+PT ELA Q+ N + +K +P RS VV GG
Sbjct: 62 RLKK------FASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY-LPLRSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + + + +QL + +LDE D + D F ++
Sbjct: 115 MNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRML-DMGFINDIR 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P T Q L +AT EI E D + V + + +E+ + +
Sbjct: 174 KILGMLPRTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQR 233
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K+ L LI + + + IVFC ++ ++ LKR +
Sbjct: 234 ------------KRYLLSHLIRERQMGQVIVFCKTKLSADQLARDLKRDGHAAEAI---- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q RL + F K LV TD A+RG+D + + +VV F+ P P +YV
Sbjct: 278 -HGDKAQGARLETLTAFKNGEVK----VLVATDVAARGLDISELPYVVNFELPNAPEDYV 332
Query: 624 RRVGRTARGAGGTGKAFIFV---VGKQVSLAQRIMERNRKGHPLHDV-PSAFE 672
R+GRT R AG +G A + GKQ+ +++ + K P+ PS E
Sbjct: 333 HRIGRTGR-AGASGVAISLMGQDEGKQLEAIEKLTRQTLKPQPVSGFWPSWLE 384
>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 190/381 (49%), Gaps = 30/381 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ +L ++ + P+ IQA A P V+ G+ + Q+G+GKT A+ LPV+
Sbjct: 4 FAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLHH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + G R +IL+PT ELASQ+ N R+ + + S V+ GG + Q
Sbjct: 64 LADRK----APAPRGGCRALILSPTRELASQIHDNIRAYGRF-LGLSSAVIFGGVGARPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GVDVL+ATPGR ++ G +L + +LDE D + D F A++ L S
Sbjct: 119 VEALRRGVDVLVATPGRLQDHVQTGAAKLQGVEVLVLDEADQML-DRGFWPAVKRLSSVM 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q LF +AT+P EI E+ D KV + P + + +E+ L+ Q
Sbjct: 178 SKNRQTLFFSATMPAEIAKIAAEMLKDPAKVSVTP-VATTAERIEQKLIHIDASQ----- 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L +++ + + + +VF T + + K + + H
Sbjct: 232 -------KRVLLSEMLRQPGIGRALVFAR---TKHGADRVTKHLNADGIAAHAI--HGDR 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF T R+ LV TD ASRGID GV HV FD P P YV R+GR
Sbjct: 280 SQGQRERALAEFRTGRAP----ILVATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVS 649
TAR AG +G+A F +V+
Sbjct: 336 TAR-AGASGEAIAFCAPDEVA 355
>gi|195998355|ref|XP_002109046.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
gi|190589822|gb|EDV29844.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
Length = 512
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 204/403 (50%), Gaps = 38/403 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L D +I+SL N P+ IQ++A P + GK+ + A ++GSGKT+AYL P+I
Sbjct: 105 SFSRLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLIH 164
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQK 387
R+++EE + + PR I+ P+ ELA Q L +SL C V +R + V GG +QK
Sbjct: 165 RIKEEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSL--CHVSKYRVVGVIGGKKQK 222
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL-- 445
+ L+ DV++ATPG + + + +L +LDE D LF++ +E +L+ L
Sbjct: 223 LLEKALETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDESFYERSLEILEK 282
Query: 446 ----------ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
+ + AQ V ATLP + L V P+ K V G H++ P ++
Sbjct: 283 IKIRGGKPMSLDTLQKDAQVTVVGATLPKRVEAILNPVIPNLKKVTTKGFHKLLPHIQ-- 340
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
Q+ K +T+ K LL+L+++ TI+FCN + +C + + L + D
Sbjct: 341 -------QDILKLKQTS---KAGTLLKLLKERRHGSTIIFCNTVDSCNWLGHYLAKVD-- 388
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
+ +L H + E RL +F L+ TD ASRG+D V+ V+ FDF
Sbjct: 389 ---LPLLRLHGGMPPEERLIRYDKFQRGEYN----ILIATDIASRGLDTKNVECVINFDF 441
Query: 616 PRDPSEYVRRVGRTAR-GAGGTGKAFIFVVG-KQVSLAQRIME 656
P ++Y+ R GRT R G+ TG+ V K++SL + + E
Sbjct: 442 PISVADYIHRAGRTGRVGSKCTGRVISLVSSRKELSLTKLLEE 484
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 198/409 (48%), Gaps = 37/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAVRALILTPTRELALQIGESFEAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+LIA PGR LI +G + L L +LDE D + D F ++ +I+
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI + D P ++ P V + D+
Sbjct: 175 LPAQRQNLMFSATMPAEIEQLAAGILHD------PAFVKVDP------VSSTVDRIQQSL 222
Query: 509 PETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
NKK L LI+ + PV +VF T + I K D + + H
Sbjct: 223 YYVEKGNKKLLLPWLIKNLQPPVVNALVFSR---TKHGADKIAK--DLTKQGIPAAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ +++F + +++ LV TD A+RGID + + HV +D P P YV R+
Sbjct: 278 NKSQTARVTALEDFKSGKTR----VLVATDIAARGIDISELSHVFNYDLPEVPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLHDVPS 669
GRTAR AG G A F ++ I + NR+ GHP VP+
Sbjct: 334 GRTAR-AGADGTAVSFCAPEEQEYLAGIEKLNRRKIPVVSGHPWDGVPA 381
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/409 (32%), Positives = 198/409 (48%), Gaps = 37/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAVRALILTPTRELALQIGESFEAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+LIA PGR LI +G + L L +LDE D + D F ++ +I+
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI + D P ++ P V + D+
Sbjct: 175 LPAQRQNLMFSATMPAEIEQLAAGILHD------PAFVKVDP------VSSTVDRIQQSL 222
Query: 509 PETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
NKK L LI+ + PV +VF T + I K D + + H
Sbjct: 223 YYVEKGNKKLLLPWLIKNLQPPVVNALVFSR---TKHGADKIAK--DLTKQGIPAAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ +++F + +++ LV TD A+RGID + + HV +D P P YV R+
Sbjct: 278 NKSQTARVTALEDFKSGKTR----VLVATDIAARGIDISELSHVFNYDLPEVPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLHDVPS 669
GRTAR AG G A F ++ I + NR+ GHP VP+
Sbjct: 334 GRTAR-AGADGTAVSFCAPEEQEYLAGIEKLNRRKIPVVSGHPWDGVPA 381
>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
Length = 476
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 194/380 (51%), Gaps = 30/380 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N+L P+ IQA P + G+ + Q+G+GKT A+ LP++
Sbjct: 9 SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ KS RV++L+PT EL+ Q+L N + + + S + GG
Sbjct: 69 RLLQNRIKPQPKSC----RVLVLSPTRELSGQILENFNAYGRH-LRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+V++ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRAVMHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRML-DMGFIHDIRKVVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +I ++ D +V + P V + D+ + +
Sbjct: 183 LPAKRQTLFFSATMPKDIAELANQMLRDPARVAVTP-------------VSSTVDRITQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL+++ PV++ ++F T + ++K + R + H
Sbjct: 230 IIQVDHAGKAAFLAQLLKQEPVNRALIFTR---TKHGADKVVKSLAKSGIRSNAI--HGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + EF R+ E R LV TD A+RGID G+ HVV FD P P YV R+G
Sbjct: 285 KSQNHRERVLAEF---RAGEIRT-LVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQ 647
RTAR AG G A V G +
Sbjct: 341 RTAR-AGTDGAAISLVAGAE 359
>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
Length = 530
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 200/390 (51%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+T RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RLLEHRIKPQPKTT----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 132 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 191 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTAERINQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ F K + L +L++ P+++ +VF KV L++ + H
Sbjct: 238 ILQVDFSAKPAFLTKLLKDEPINRALVFTRTKHGADKVVKTLEKAG-----IAASAIHGN 292
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F RS + R LV TD A+RGID G+ HV+ FD P P YV R+G
Sbjct: 293 KSQNHRERTLAQF---RSGDIRT-LVATDIAARGIDVDGITHVINFDLPNVPETYVHRIG 348
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 349 RTAR-AGAEGTAISLVAGGEELSYLRDIER 377
>gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
Length = 479
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 196/380 (51%), Gaps = 30/380 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N+L P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ KS RV++L+PT EL+ Q+L N + + + S + GG
Sbjct: 69 RLLQNRIKPQPKSC----RVLVLSPTRELSGQILDNFNAYGRH-LRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ GVDV++ATPGR + L++ L+L + +LDE D + D F ++ +I+
Sbjct: 124 QVRSVMHGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRML-DMGFIHDIRKVIAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q L +AT+P +I ++ D +V + P V + D+ + +
Sbjct: 183 LPVKRQTLLFSATMPKDIAELANQMLRDPARVAVTP-------------VASTVDRIAQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ +K + L QL+++ PV++ ++F T + ++K ++ +R H
Sbjct: 230 IIQVDHASKPAHLAQLLKQEPVNRALIFTR---TKHGADKVVKSL--AKSGIRSNAIHGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID G+ HVV FD P P YV R+G
Sbjct: 285 KSQNHRERVLAAF---RTGEIRT-LVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQ 647
RTAR AG G A V G +
Sbjct: 341 RTAR-AGTEGAAISLVAGAE 359
>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 638
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 198/409 (48%), Gaps = 37/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAIRALILTPTRELALQIGESFDAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+LIA PGR LI +G + L NL +LDE D + D F ++ +I+
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSNLEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI +L ++ P ++ P V + D+
Sbjct: 175 LPGERQNLMFSATMPTEI-EQLA-----AGILRKPAFVKVDP------VSSTVDRIQQSL 222
Query: 509 PETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
NKK L LI+ + PV +VF T + I K D + + H
Sbjct: 223 YHVEKGNKKFLLPWLIKNLQPPVVNALVFSR---TKHGADKIAK--DLTKQGIPAAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ ++ F ++K LV TD A+RGID + + HV +D P P YV R+
Sbjct: 278 NKSQTARVTALENFKAGKTK----VLVATDIAARGIDISELSHVFNYDLPEVPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR------KGHPLHDVPS 669
GRTAR AG G A F ++ I + NR GHP VP+
Sbjct: 334 GRTAR-AGADGTAVSFCAPEEQEYLAGIEKLNRGKIPVVSGHPWDGVPA 381
>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
[Saccoglossus kowalevskii]
Length = 543
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/461 (29%), Positives = 219/461 (47%), Gaps = 45/461 (9%)
Query: 215 SDYNSRSNKHE---KSGTKIDRGW---RSGG---SIHNLQYEPTDCPKQRHKYSADGDFF 265
++Y+ N+H K +GW RS G +I+N + P PK+ + S +
Sbjct: 72 TEYSHYVNQHFNKFKPTRLASQGWKHSRSCGDHFTINNTRGNPA-FPKKSDQGSEHNE-- 128
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF + + +I L +P+ +Q + P V+ G + + A ++GSGKTL+YLLP
Sbjct: 129 SVTSFSDFHLHESLINGLASMEIEQPTNVQILTIPQVMRGHNVLCAAETGSGKTLSYLLP 188
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ +++ E + KS G PR ++L P ELA QVL+ R LSK + +V GG R
Sbjct: 189 MLHQMKTETEKLGMKSAVGLPRALVLLPARELAEQVLAVARRLSKF-TELSANIVEGGRR 247
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
KT +D+++ATPG + + G + + N+R ++DE+D + D+ F +L
Sbjct: 248 HKTLHSTSDSPLDLMVATPGALLKCVTSGWIHMDNVRYVVIDEIDTML-DDSFRTMTLNL 306
Query: 446 ISSSPV--------TAQYLFVTATLPVEIYNKLVEVFPDCKVVM--GPGMHRISPGLEEF 495
+ + AQ + + AT+P L V D +V +H + P + +
Sbjct: 307 LKRISIRHSADNTENAQVIMIGATMPKNAEEMLDNVVEDGSLVTVKTTHLHHLMPHIPQK 366
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ ++ KT E + K K PV +VFCNKI +C N L +F K
Sbjct: 367 FIRIHSKDKAGKTLELVKRDVKC-------KIPV---VVFCNKIDSC----NWLYQF-LK 411
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
E V L + ++ + R ++F K + LVCTD SRG+D HV+ FDF
Sbjct: 412 ENNVSALKLNGGMNHKERYGLFQQF----QKGIQNVLVCTDIGSRGLDTIRAQHVINFDF 467
Query: 616 PRDPSEYVRRVGRTAR-GAGGTGKAFIFVVGK-QVSLAQRI 654
P S+Y+ R GR R G+ +G +V K V L +I
Sbjct: 468 PHGMSDYIHRAGRVGRVGSQTSGHVTSLIVHKWDVDLVHKI 508
>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 450
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 203/405 (50%), Gaps = 36/405 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L R+ + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + R ++LAPT ELA+Q+ + R+ + P ++V GG + Q
Sbjct: 64 LAADR----RRPAPFTARTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIV-GGVSHRPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L G+DVL+ATPGR + I G L+L +LDE D + D F V ++ +++
Sbjct: 119 IDMLARGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHML-DLGFIVPIRQIVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P EI ++ + +V + P R++ + FLVD
Sbjct: 178 PKKRQTLLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHV--FLVDGGA---- 231
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ L++L+ + VS+ IVF T R + + + D V H
Sbjct: 232 ----------KRDMLIELMNDADVSRAIVFTR---TKRGADRVAEHLD--AAGVGAEAIH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R+ + F R++ LV TD A+RGID GV HVV ++ P P YV R
Sbjct: 277 GNKSQSQRIRALDAFRKGRTR----VLVATDIAARGIDVDGVTHVVNYELPETPEAYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
+GRTAR AG +G+A + L ++I + R+ D SA
Sbjct: 333 IGRTAR-AGASGRAISLCDNGERQLLRQIEKLTRQTLAFTDRRSA 376
>gi|386400169|ref|ZP_10084947.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740795|gb|EIG60991.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 518
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+T RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RLLENRIKPQPKTT----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 183 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIQQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ F K + L +L++ PV++ +VF KV L++ + H
Sbjct: 230 IIQVDFSAKPALLAKLLKDEPVNRALVFTRTKHGADKVVKTLEKAG-----IPASAIHGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F R+ E R LV TD A+RGID G+ HV+ FD P P YV R+G
Sbjct: 285 KSQNHRERTLAQF---RTGEIRT-LVATDIAARGIDVDGITHVINFDLPNVPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 341 RTAR-AGAEGTAISLVAGGEELAYLRDIER 369
>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. BTAi1]
Length = 469
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 192/378 (50%), Gaps = 30/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRALMPGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERITQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K S L QL++ PV++ +VF T + ++K ++ + + H
Sbjct: 224 VIQVDHSAKPSLLAQLLKDEPVNRALVFTR---TKHGADKVVKGLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RTGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVG 645
RTAR AG G A V G
Sbjct: 335 RTAR-AGADGVAISLVAG 351
>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 472
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 185/375 (49%), Gaps = 30/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +ILAPT ELA+QV N K + ++ GG + Q
Sbjct: 63 LASGRRRAL------MPRSLILAPTRELAAQVAENFEKYGKQH-DLQLALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 116 VKALNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRML-DMGFIPDIETICSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P I KL + F + P +S + + + K P
Sbjct: 175 PEPRQTLLFSATMPPPI-EKLAQKF-----LTNPKRIEVSRA-----ASTNENITAFKIP 223
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
A K+ L L+ V I+F N+ T R++ L+ + H +D
Sbjct: 224 VKA-REKRETLRWLLANDHVETAIIFANRKTTVREINKSLQSHGFASGEI-----HGDMD 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q +R+A + F LV +D A+RG+D GV HV FD P P +YV R+GRT
Sbjct: 278 QSSRIAELNRFKAGEVN----ILVASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRT 333
Query: 630 ARGAGGTGKAFIFVV 644
R AG G+AF FV
Sbjct: 334 GR-AGAKGRAFTFVT 347
>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
Length = 443
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 187/379 (49%), Gaps = 36/379 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ IQA A P V+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLRAVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARALM------PRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QVKALEKGVDVLIATPGRLMDLFERGKILLNGCNMLVIDEADRML-DMGFIPDIEHICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLSNPKSIEVARPAT--ASTNIAQHLVKVDARK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL L++ V ++FCN+ T R++ L+R K + H
Sbjct: 229 ----------KREALRALLDGQQVQSAVIFCNRKTTVRELNKSLQRDGYKSGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ +R+A ++ F LV +D A+RG+D GV HV FD P P +YV R
Sbjct: 274 GDIDQASRIAELERFRDGTVN----ILVASDVAARGLDIKGVSHVFNFDAPWHPDDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVV 644
+GRT R AG G A+ FV
Sbjct: 330 IGRTGR-AGAKGVAYTFVT 347
>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278]
gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 278]
Length = 473
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 197/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K S L QL++ PV++ +VF T + ++K ++ + + H
Sbjct: 224 VIQVDHSAKPSLLAQLLKNEPVNRALVFTR---TKHGADKVVKGLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RTGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G R +ER
Sbjct: 335 RTAR-AGADGVAISLVAGADEMSYLRDIER 363
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 201/379 (53%), Gaps = 37/379 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 18 TFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 77
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + G+++ R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 78 LLNEQPPKPGMARRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 132
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + L+ + + L ++ +LDE D + D F ++ +IS
Sbjct: 133 TQERALQQGADILIATPGRLLDLMNQKRIDLQHVEILVLDEADRML-DMGFIHDVKRIIS 191
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI +LV+ + P I+P +++
Sbjct: 192 KMPSKKQTLFFSATMPAEI-TQLVKTL-----LQNPVKVEITP----------VSSTAER 235
Query: 508 TPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
++ +L NK+ L +L++ + +VF T R + +++ D + +
Sbjct: 236 IKQSVYLLETGNKQKQLNELMKDPSIVSALVFTR---TKRGADRVVR--DLTKVNITAQA 290
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q +R +K F +S E R+ LV TD A+RGID + HV+ F+ P P YV
Sbjct: 291 IHGNKSQVSRQTALKNF---KSGETRV-LVATDIAARGIDIDELSHVINFNLPNIPETYV 346
Query: 624 RRVGRTARGAGGTGKAFIF 642
R+GRT R AG +G A F
Sbjct: 347 HRIGRTGR-AGLSGTAISF 364
>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
nagariensis]
gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
nagariensis]
Length = 622
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/466 (28%), Positives = 217/466 (46%), Gaps = 38/466 (8%)
Query: 216 DYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKEL 273
DY S +N + + T + +G + + +++H S GD ++F+ +
Sbjct: 68 DYGSGANGNGYTSTSYQKTGMNGQPVSTEGFVSPSEYRRQHDISVQGDHVPDPLQTFESV 127
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
G +++ ++R F P+ IQA A+P + G+ + ++GSGKT +LLP + ++Q
Sbjct: 128 GFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLHIQQT 187
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
K P +++LAPT ELA Q+ + + R+ V GG + QL ++
Sbjct: 188 R-----KDPRSGPTLLVLAPTRELAVQIKTEADKFGRSS-GIRNTCVYGGAPKGPQLRDI 241
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
Q GV ++IATPGR ++ G ++L + +LDE D + D FE +Q ++ + P
Sbjct: 242 QHGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRML-DMGFEPQIQRIVRTLPRQR 300
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
Q LF +AT P E+ + + V+ +H G+EE LV T
Sbjct: 301 QTLFFSATWPREVKHIA------AQFVVNQTVHVFIGGVEEKLV-----ANKSITQHVLV 349
Query: 514 LN----KKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
LN K L ++I P ++ I+FC C ++ + R R H
Sbjct: 350 LNSSHEKFGELSRIIRSKPAGTRIIIFCTTKRMCDQLSYQMSR------EFRAAAIHGDK 403
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F R+ LV TD A+RG+D V VV FDFP +Y+ R+GR
Sbjct: 404 KQSERDYVLQAFKDGRTP----ILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGR 459
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
T R AG TG+AF F+ G+ A+ +++ R+ VP E +
Sbjct: 460 TGR-AGATGEAFTFMTGEDAKHARDLIQVMREAQ--QTVPPQLEQL 502
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/385 (32%), Positives = 186/385 (48%), Gaps = 29/385 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++E+L+ + + PS IQA A P V++G+ + A Q+G+GKT + LPV++R
Sbjct: 21 FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR + G G R ++L PT ELA+QVL N R+ S +P RS VV GG + Q
Sbjct: 81 LRHGKPAG-----RGQIRALVLTPTRELAAQVLENVRAYSSH-LPLRSDVVFGGVKANPQ 134
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVD+L+ATPGR + L ++G L L C +LDE D + D F ++ LI
Sbjct: 135 INRLRGGVDLLVATPGRLLDLHQQGALHFDQLECLVLDEADRML-DMGFIHDIRRLIRLM 193
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
PV Q L +AT I + D + ++ + +E+ + C ++SD
Sbjct: 194 PVKRQTLLFSATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSD--- 250
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
L LI + +VF +V + L + + H
Sbjct: 251 ---------LLSHLIRAGDWRQVLVFSRTKHGANRVADRLSKEGLSAAAI-----HGNKS 296
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R ++ F + LV TD A+RGID + HVV D P +YV R+GRT
Sbjct: 297 QGARTRALQGFKQGNIR----VLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRT 352
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRI 654
R AG TG A V ++ L + I
Sbjct: 353 GR-AGETGHAVSLVAAEEALLLKAI 376
>gi|39936732|ref|NP_949008.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris TIE-1]
gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
CGA009]
gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 474
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 199/387 (51%), Gaps = 30/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 10 SFQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ SK+ RV++L+PT EL+ Q+L + + + V + + GG
Sbjct: 70 RLLQNRIKPASKTC----RVLVLSPTRELSGQILDSFNAYGRH-VHLSAALAIGGVPMGR 124
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GVDVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 125 QVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRML-DMGFINDIRKIVAK 183
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 184 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VSSTVERINQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K +AL Q+++ V++ +VF T + ++K R + H
Sbjct: 231 VIQLDHSAKPAALAQILKDDKVNQALVFTR---TKHGADKVVKGLARAGITADAI--HGN 285
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 286 KSQNYRERVLAAF---RTGELRT-LVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIG 341
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR AG G A G++++ + I
Sbjct: 342 RTAR-AGADGTAISLCAGEEMAYLRDI 367
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/413 (31%), Positives = 197/413 (47%), Gaps = 45/413 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L S +++++ + PS IQA A PPV+EG+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RL-----SAAAPRRKGAVRALILTPTRELALQIGESFDAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E +++GVD+LIA PGR LI +G + L NL +LDE D + D F ++ +I+
Sbjct: 116 QVEAIRKGVDILIACPGRLNDLIGQGHIDLSNLEVFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV----MGPGMHRISPGLEEFLVDCSGDQE 504
P Q L +AT+P EI + D V + + RI L + V+
Sbjct: 175 LPAKRQNLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVERIDQSL--YFVEKG---- 228
Query: 505 SDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
NKK L LI+ PV +VF K+ D + +
Sbjct: 229 ----------NKKLLLPWLIKNLTPPVQNALVFSRTKHGADKIAR-----DLTKQGITAA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R+A ++ F +++ LV TD A+RGID + + HV +D P P Y
Sbjct: 274 AIHGNKSQTARVAALEGFKEGKTR----VLVATDIAARGIDISELSHVFNYDLPEVPETY 329
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLHDVPS 669
V R+GRTAR AG G A F +++ I + NR+ GHP VP+
Sbjct: 330 VHRIGRTAR-AGADGTAVSFCAPEEMEYLAGIEKLNRRKIPVVSGHPWDGVPA 381
>gi|367474852|ref|ZP_09474344.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
gi|365272847|emb|CCD86812.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
Length = 469
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 30/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL+++ PV++ +VF T + ++K ++ + + H
Sbjct: 224 VIQVDHSAKPNLLAQLLKEEPVNRALVFTR---TKHGADKVVKSLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RTGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVG 645
RTAR AG G A V G
Sbjct: 335 RTAR-AGAEGVAISLVAG 351
>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Acyrthosiphon pisum]
Length = 666
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 195/388 (50%), Gaps = 26/388 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ DY+ +K+Q F P+ IQA+++P + G++ + Q+GSGKTLAY+LP I
Sbjct: 123 NFNEVILPDYVFNEVKKQGFNNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLPAIL 182
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + P V++LAPT ELA Q+ S R+ V GG +
Sbjct: 183 HINHQP----RLLRYDGPIVLVLAPTRELAQQIQQVAVSFGTSTF-VRNTCVFGGAPKGP 237
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++L+ GV+++IATPGR + ++ L +LDE D + D FE ++ +I
Sbjct: 238 QVDDLERGVEIVIATPGRLIDFLERNTTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 296
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE-EFLVDCSGDQESDK 507
Q L +AT P E+ N L E F D + + G +S +VD D E ++
Sbjct: 297 IRPDRQVLMWSATWPPEVKN-LAEEFLDDYIQVNVGSLNLSANHNISQVVDVCDDYEKEQ 355
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K ALL I P +KTI+F + T R V+NI+K +R R + H
Sbjct: 356 --------KLYALLTDIFSQPDNKTIIF---VETKRSVDNIVKLVNRNGW--RSIGIHGN 402
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F RS +A + LV TD A+RG+D V +V+ FD+P +YV R+G
Sbjct: 403 KSQNERDHTLNQF---RSGQANI-LVATDVAARGLDVDDVKYVINFDYPNSSEDYVHRIG 458
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIM 655
RT R + TG AF FV A+ ++
Sbjct: 459 RTGR-SSRTGTAFTFVTPSNARQAKDLI 485
>gi|384222064|ref|YP_005613230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
gi|354960963|dbj|BAL13642.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
Length = 522
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 197/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G+DVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRALMPGLDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTAERINQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ F K + L +L++ PV++ +VF KV L++ + H
Sbjct: 224 IIQVDFSAKPAFLTKLLKDEPVNRALVFTRTKHGADKVVKTLEKAG-----IAASAIHGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F RS E R LV TD A+RGID G+ HV+ FD P P YV R+G
Sbjct: 279 KSQNHRERTLAQF---RSGEIRT-LVATDIAARGIDVDGISHVINFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 335 RTAR-AGADGTAISLVAGGEELSYLRDIER 363
>gi|435852049|ref|YP_007313635.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662679|gb|AGB50105.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 422
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 195/385 (50%), Gaps = 50/385 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ L + +L+ + ++ P+ IQA A P ++E + I Q+G+GKT A++LP++Q
Sbjct: 2 SFENLKIKKTLQRALESEGYITPTPIQAQAIPHLLENRDLIGIAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
+L + S S +PRV++LAPT ELA+Q+ S S G + FR VV GG Q
Sbjct: 62 KLSETN----KPSKSRAPRVLVLAPTRELAAQI---GDSFSTYGQFIRFRYTVVFGGVGQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L GVDVLIATPGR + L+ +G ++L + +LDE D + D F + ++
Sbjct: 115 GPQVKALAHGVDVLIATPGRLLDLLDQGHVKLNEVEFFVLDEADRML-DMGFIKDVYRIV 173
Query: 447 SSSPVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFLV 497
PV Q LF +AT+ E+ KL VEV P V +++F+
Sbjct: 174 PLLPVKRQSLFFSATMSPQIAELARKLLTSPVHVEVSPQATTV---------EKIDQFVF 224
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
DQE NK + LL L++ + + +VF KV +L +
Sbjct: 225 FV--DQE----------NKDNLLLGLLQHNHLRSVLVFTRTKHRANKVALMLNK-----N 267
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
++ H Q R M +F +S R+ LV TD A+RGID + HV+ +D P
Sbjct: 268 KIEADAIHGNKSQNQRTKAMDDF---KSGNVRV-LVATDIAARGIDIEDISHVINYDLPN 323
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIF 642
+P YV R+GRTAR AG G A+ F
Sbjct: 324 EPENYVHRIGRTAR-AGSDGTAYSF 347
>gi|383769279|ref|YP_005448342.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
gi|381357400|dbj|BAL74230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
Length = 526
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 198/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L + ++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQDFGLAEPLARALAEEKYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 132 QVRSLMQGVDVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRML-DMGFINDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 191 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIQQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ F K + L QL+++ PV++ +VF KV L++ + H
Sbjct: 238 IIQVDFSAKPAFLAQLLKQEPVNRALVFTRTKHGADKVVKALEKAG-----IPASAIHGN 292
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F RS + R LV TD A+RGID G+ HV+ FD P P YV R+G
Sbjct: 293 KSQNHRERTLAQF---RSGDIRT-LVATDIAARGIDVDGITHVINFDLPNVPETYVHRIG 348
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 349 RTAR-AGAEGTAISLVAGGEELAYLRDIER 377
>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase [Pedobacter saltans DSM 12145]
gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
12145]
Length = 445
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 213/405 (52%), Gaps = 34/405 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F++ + ++ +++ + +P+ IQ A PP++ G+ + Q+G+GKT AY+LP+I
Sbjct: 3 KNFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMI 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+L+ + + R +ILAPT ELA Q+ N + SK RS+VV GG K
Sbjct: 63 MKLKFAQGDDI--------RALILAPTRELALQIEENVKIFSKY-TDLRSVVVFGGIGPK 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + L +G D+LIATPGRFM L +G + L+ +LDE D + D F + ++
Sbjct: 114 AQADQLAKGADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMM-DMGFMPQINKVLE 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+ E +L E F ++ P ++P + + +QE
Sbjct: 173 IVPKKRQNLLFSATMS-EKVERLSENF-----LLWPTKVEVTP---QATPAETVEQELYF 223
Query: 508 TPETAFLNKKSALLQL-IEKSP-VSKTIVFCNKIVTCRKVEN-ILKRFDRKETRVRVLPF 564
P L K LL++ +E P VSK I+FC V V +L+RF+ E V+VL
Sbjct: 224 VPN---LKTKINLLKIFVEDDPDVSKLIIFCRTRVVAENVYRFLLRRFN--ENHVKVL-- 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
HA Q TR+ ++ F ++ E R+ LV TD A+RGID + V HV+ F+ P +YV
Sbjct: 277 HANKGQNTRINSINSF---KNDEVRI-LVATDVAARGIDVSSVSHVINFEVPVVYEDYVH 332
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
R+GRT R A GKA F + ++I + R+ P+ D+PS
Sbjct: 333 RIGRTGR-AFSQGKAITFCNPAEEYSIRKIEKLIRQQIPVKDIPS 376
>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 443
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 194/376 (51%), Gaps = 33/376 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + +++R F P+ +Q A P V+EG+ + A +G+GKT A+ LP+ +
Sbjct: 33 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 92
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ G +K GSPR ++++PT ELA Q+ + C L+K R + V GG + K
Sbjct: 93 RI------GRAKR-PGSPRALVVSPTRELAQQIDAACTQLAKAS-NRRMLTVMGGTKYKG 144
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G+DVL+ATPGR L++ G+++L ++ +LDE D + D F ++ ++++
Sbjct: 145 QIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRML-DMGFWPTMKKVVAA 203
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +ATL ++ + + D V + +++F++
Sbjct: 204 TPSSRQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGP------- 256
Query: 509 PETAFLNKKSALLQLIEKSPVSK-TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KK LL+L+ + SK IVF + LKR R H+
Sbjct: 257 ------MKKPELLRLVLQQRGSKRVIVFTDTKTRAEICTGQLKR-----AGFRADSIHSD 305
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R ++ F SK A LV TD +RGID + +++VV +D P P +YV R+G
Sbjct: 306 KTQVQRKRALEGF----SKGAIDVLVATDVLARGIDVSNIEYVVNYDLPESPEDYVHRIG 361
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG TG A FV
Sbjct: 362 RTGR-AGETGYAISFV 376
>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 414
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 194/376 (51%), Gaps = 33/376 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + +++R F P+ +Q A P V+EG+ + A +G+GKT A+ LP+ +
Sbjct: 4 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ G +K GSPR ++++PT EL Q+ + C L+K R + V GG + K
Sbjct: 64 RI------GRAKR-PGSPRALVVSPTRELTQQIDAACTQLAKAS-NRRMLTVMGGTKYKG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G+DVL+ATPGR L++ G+++L ++ +LDE D + D F ++ ++++
Sbjct: 116 QIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRML-DMGFWPTMKKVVAA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +ATL ++ + + D V + +++F++
Sbjct: 175 TPSSRQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGP------- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSK-TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KK ALL+L+ + SK IVF + LKR R H+
Sbjct: 228 ------MKKPALLRLVLQQRGSKRVIVFADTKTRAEICTGQLKR-----AGFRADSIHSD 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R ++ F SK A LV TD +RGID + +++VV +D P P +YV R+G
Sbjct: 277 KTQVQRKRALEGF----SKGAIDVLVATDVLARGIDVSNIEYVVNYDLPESPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG TG A FV
Sbjct: 333 RTGR-AGETGYAISFV 347
>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
Length = 570
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 189/372 (50%), Gaps = 30/372 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ + P+ IQ A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 9 SFADLGLSPELLQAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI- 67
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E+ ++ + PR +ILAPT ELA+QV N K +++++ GG
Sbjct: 68 -----EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALII-GGESMSD 121
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVLIATPGR + + G + L +++ ++DE D + D F +Q ++S
Sbjct: 122 QIAILDRGVDVLIATPGRLLDMFDRGRILLNDVKVLVIDEADRML-DMGFIPDVQRIVSM 180
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATL EI E + K + + +E+FL
Sbjct: 181 LPKMRQTLFFSATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVD-------- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
++K+ L +I + +FCN+ R V+ + K K+ V+ H +
Sbjct: 233 ----HIDKRETLRHIIRIENLKNAFIFCNR---KRDVDILFKSL--KKHGFDVVQMHGDM 283
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q RL ++ +F +S EARL LVC+D +RGID V HV FD P +YV R+GR
Sbjct: 284 SQPARLESLAKF---KSGEARL-LVCSDVVARGIDIKAVSHVFNFDVPIHAEDYVHRIGR 339
Query: 629 TARGAGGTGKAF 640
T R AG TGKAF
Sbjct: 340 TGR-AGETGKAF 350
>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 506
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/404 (30%), Positives = 200/404 (49%), Gaps = 35/404 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG SD +E++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP +
Sbjct: 2 KQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL G +K G P ++++ PT ELA Q+ C +++ R + V GG
Sbjct: 62 DRL------GHAKGGQG-PLMLVVTPTRELAQQIGEVCTAIA-ASTHHRILTVVGGLSYT 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+LIATPGR + L+++G ++L ++ +LDE D + D F A++ +I
Sbjct: 114 PQINKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRML-DMGFWPAMKKIIG 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P + Q L +AT+ I N + ++ D V + +E+++V +
Sbjct: 173 ATPASRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVA------- 225
Query: 508 TPETAFLNKKSALLQ--LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K ALL+ L EK + IVF T + ++ +R R + H
Sbjct: 226 ------QTLKPALLKAVLAEKG-SDRVIVFAR---TRSRADSTCRRLKRAGYTAEAI--H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ Q R + F ++ LV TD +RGID VD+VV +D P P +YV R
Sbjct: 274 SDRSQAQRRRALDNFAAGKTG----VLVATDVLARGIDVEEVDYVVNYDLPTQPEDYVHR 329
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
+GRT R AG G A FV + + I + ++ P +VPS
Sbjct: 330 IGRTGR-AGAAGFAVSFVSPETADALRDIEKLIKRPIPEMEVPS 372
>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris DX-1]
gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
DX-1]
Length = 473
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 120/387 (31%), Positives = 198/387 (51%), Gaps = 30/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N+L P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL LQ K TS + RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 69 RL----LQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRH-IHLTATLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GVDVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VSSTVERINQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL++ V++ +VF T + ++K R + H
Sbjct: 230 VIQLDHSAKPAVLAQLLKDEKVNQALVFTR---TKHGADKVVKGLARAGITADAI--HGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HV FD P P YV R+G
Sbjct: 285 KSQNYRERVLAAF---RTGELRT-LVATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR AG G A G++++ + I
Sbjct: 341 RTAR-AGADGTAISLCAGEEMAYLRDI 366
>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 516
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/404 (30%), Positives = 200/404 (49%), Gaps = 35/404 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG SD +E++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP +
Sbjct: 12 KQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSL 71
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL G +K G P ++++ PT ELA Q+ C +++ R + V GG
Sbjct: 72 DRL------GHAKGGQG-PLMLVVTPTRELAQQIGEVCTAIA-ASTHHRILTVVGGLSYT 123
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+LIATPGR + L+++G ++L ++ +LDE D + D F A++ +I
Sbjct: 124 PQINKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRML-DMGFWPAMKKIIG 182
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P + Q L +AT+ I N + ++ D V + +E+++V +
Sbjct: 183 ATPASRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVA------- 235
Query: 508 TPETAFLNKKSALLQ--LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K ALL+ L EK + IVF T + ++ +R R + H
Sbjct: 236 ------QTLKPALLKAVLAEKG-SDRVIVFAR---TRSRADSTCRRLKRAGYTAEAI--H 283
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ Q R + F ++ LV TD +RGID VD+VV +D P P +YV R
Sbjct: 284 SDRSQAQRRRALDNFAAGKTG----VLVATDVLARGIDVEEVDYVVNYDLPTQPEDYVHR 339
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
+GRT R AG G A FV + + I + ++ P +VPS
Sbjct: 340 IGRTGR-AGAAGFAVSFVSPETADALRDIEKLIKRPIPEMEVPS 382
>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 402
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/379 (33%), Positives = 198/379 (52%), Gaps = 28/379 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ ++++L+ +F +P+ IQA A PP++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 5 TFDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+ + + S R +ILAPT ELA Q+ N R L +P R +++ GG +K
Sbjct: 65 HLMQKR----ERPRAFSTRALILAPTRELAVQIDDNLRMLG-GELPIRRVLILGGVGRKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ +Q G D++I TPGR L+ L L + +LDE D + D F ++ +++S
Sbjct: 120 QVQRMQRGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRML-DLGFMRDIRKVLAS 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI +L E ++ P RI+ + + + D+ +
Sbjct: 179 LPEKRQSLLFSATMPGEI-GRLAE-----GLLRNPARVRIA------VEEPTPDRIAQHV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L +L+ + K IVF +V L+ E+ + H
Sbjct: 227 HFIESTGKRVLLTRLLADRALEKVIVFTRTKHGANRVAEHLE-----ESGIPADAIHGNK 281
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F RS EAR+ LV TD A+RGID AGV HVV F+ P +P YV R+GR
Sbjct: 282 SQNARQRALERF---RSGEARV-LVATDIAARGIDVAGVSHVVNFELPNEPESYVHRIGR 337
Query: 629 TARGAGGTGKAFIFVVGKQ 647
TAR AG G A F G +
Sbjct: 338 TAR-AGQRGIAISFCDGSE 355
>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 455
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 181/375 (48%), Gaps = 30/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S +++S+++ + P+ IQ A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSPELLKSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPMI-- 60
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++ + + PR +IL PT ELA+QV N + + ++ GG + Q
Sbjct: 61 ----DIMAAGRRRALMPRSLILEPTRELAAQVAENFEKYGENH-DLKMALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++ + S
Sbjct: 116 IKALNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRML-DMGFIPDIEFICSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P I + + K + + + F V+ Q
Sbjct: 175 PEQRQTMLFSATMPPPIEKLSKQFMSNPKRIETTRAATTNKDITAFRVNVGQRQ------ 228
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K+ L L+E V IVF N+ T R++ L+R K + H +D
Sbjct: 229 ------KRETLEWLLENDHVETAIVFANRKTTVRELNKSLQRRGFKSGEI-----HGDID 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R A ++ F LV +D A+RG+D GV HV FD P P +YV R+GRT
Sbjct: 278 QNQRNAELQRFKDGEIN----ILVASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRT 333
Query: 630 ARGAGGTGKAFIFVV 644
R AG G+AF FV
Sbjct: 334 GR-AGAKGRAFTFVA 347
>gi|365880479|ref|ZP_09419846.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
gi|365291464|emb|CCD92377.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
Length = 481
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 197/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K S L QL++ PV++ +VF T + ++K ++ + + H
Sbjct: 224 VIQVDHSAKPSLLAQLLKDEPVNRALVFTR---TKHGADKVVKGLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RTGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G R +ER
Sbjct: 335 RTAR-AGADGVAISLVAGSDEMSYLRDIER 363
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 121/390 (31%), Positives = 190/390 (48%), Gaps = 29/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG ++ ++ +L N+ P+ IQ A PP + G+ Q+G+GKT A+ LP++
Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + QG K PR ++L+PT ELA Q+ + R + + S+ + GG Q
Sbjct: 62 RLIKNPRQG--KLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L G DVLIATPGR L+++G + L + +LDE D + D F ++ +I+
Sbjct: 119 QVKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRML-DMGFMPDIRRIIAK 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI ++ D + +E G +S
Sbjct: 178 LPQQKQTLLFSATMPPEIQKLASQLLHDP----------VEINIEPERATADGITQSLYY 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
T +K L ++++ V++ +VF C K L++ T ++V H
Sbjct: 228 VPTK--HKPELLASVLKREEVTRAVVFVRTKHGCNKAALQLEK-----TGLKVDAIHGNK 280
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F + LV TD A+RG+D GV HV+ +D P +P YV R+GR
Sbjct: 281 SQSARQRTLYAFKNGHIQ----VLVATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGR 336
Query: 629 TARGAGGTGKAFIFVVGKQVSL---AQRIM 655
T R AG +G A F +Q L QRI+
Sbjct: 337 TGR-AGKSGIAISFCDDEQRGLLRDVQRIL 365
>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase [Nitrobacter hamburgensis X14]
gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
Length = 477
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 196/380 (51%), Gaps = 30/380 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N+L P+ IQ P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ KS RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RLLQNRIKPQPKSC----RVLVLSPTRELSGQILESFNAYGRH-LRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + +GV+V++ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRAVMQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRML-DMGFIHDIRKVVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q LF +AT+P +I ++ D +V + P V + D+ + +
Sbjct: 183 LPVKRQTLFFSATMPKDIAELAEQMLRDPARVAVTP-------------VASTVDRIAQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ +K + L QL+++ PV++ ++F T + ++K ++ +R H
Sbjct: 230 IIQVDHASKPAFLAQLLKQEPVNRALIFTR---TKHGADKVVKSL--AKSGIRSDAIHGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID G+ HVV FD P P YV R+G
Sbjct: 285 KSQNHRERVLAAF---RTGEIRT-LVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQ 647
RTAR AG G A V G +
Sbjct: 341 RTAR-AGADGAAISLVAGAE 359
>gi|365891188|ref|ZP_09429640.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
gi|365332881|emb|CCE02171.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
Length = 473
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 196/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLDNRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRMSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K S L QL++ PV++ +VF T + ++K ++ + + H
Sbjct: 224 VIQVDHSAKPSLLAQLLKNEPVNRALVFTR---TKHGADKVVKGLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RTGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G R +ER
Sbjct: 335 RTAR-AGADGVAISLVAGADEMSYLRDIER 363
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 198/376 (52%), Gaps = 30/376 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + ++ R F P+ +Q A P V+ G+ + A ++G+GKT A+ LP+I+
Sbjct: 4 TFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPLIE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E +K GSPRV+++ PT ELA Q+ + C +++ G R + V GG K
Sbjct: 64 RLAGDE----AKRRPGSPRVLVVTPTRELAQQIDAACSDMTR-GSRVRVLSVVGGMPYKG 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +G+D+LIATPGR L++ G ++L + +LDE D + D F ++ ++++
Sbjct: 119 QIARLNKGIDILIATPGRLFDLMQRGDVKLDRVETLVLDEADRML-DMGFWPTMKKIVAA 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +AT+ ++ + + + D V + ++++++
Sbjct: 178 TPASRQTLLFSATIERKVMDSVSTILNDPAFVEIAHRGETADTVDQYVI----------- 226
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
P T KK ALL+ ++E + IVF T ++ + + + RV H+
Sbjct: 227 PVTQM--KKPALLRAVLEDKGADRVIVFVR---TRQRADMCTHQL--RAAGYRVDSIHSD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F+ ++ LV TD +RGID + V HV+ +D P +P +Y+ R+G
Sbjct: 280 KTQAQRKRALDGFSEGKTD----VLVATDVLARGIDVSLVHHVINYDLPDNPEDYIHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 336 RTGR-AGEAGYAISFV 350
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 189/373 (50%), Gaps = 28/373 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++ ++K + + P+ IQ A P + G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + ++ K G+P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGDSFQTYGK-GLPLRHAVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L+++G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQALRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRML-DMGFIHDVRRVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + D P +SP + + S +
Sbjct: 176 LPPKRQTLFFSATLPPDIVDLARSILTD------PIRVEVSP------ASSTAETVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L L+++ +S+ +VF +V L + V H
Sbjct: 224 YFVEREQKRGLLTHLLKEGNISRALVFTRTKHGANRVAKQL-----EGAGVSSAAIHGNK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF RS R+ LV TD A+RGID G+ +VV +D P P +YV R+GR
Sbjct: 279 SQNARERALDEF---RSGTLRV-LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGR 334
Query: 629 TAR-GAGGTGKAF 640
T R GA GT +F
Sbjct: 335 TGRAGASGTAVSF 347
>gi|302656972|ref|XP_003020220.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
0517]
gi|291184030|gb|EFE39602.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
0517]
Length = 528
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/402 (32%), Positives = 198/402 (49%), Gaps = 43/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SLK RP+ IQ P +++G+ CI ++GSGKT+A+ P++
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ G+ VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 160 KWSEDPF-GIY--------AVILTPTRELALQIFEQVKAIS-APQSLKPLLITGGSDMRP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR IK + I+ L +R +LDE D L D
Sbjct: 210 QAIGLSQRPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDV 269
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L SS Q L TAT+ E+ + ++ P K P + E +
Sbjct: 270 ETCLSALPPSS--DRQTLLFTATVTPEV--RALKSMPRAK--NKPPIFVTEISTENTTIP 323
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ Q + P LN + A LQ++ E + TI+FCN+ T +E IL+R
Sbjct: 324 PTLKQTYLQVP----LNHREAFLQVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSH- 378
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
RV H+ L Q R+AN+ F R+ ARL LV TD A+RG+D V V+ +D
Sbjct: 379 ----RVTSLHSLLPQSERVANLSRF---RASAARL-LVATDVAARGLDIPSVGLVINYDV 430
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +Y+ RVGRTAR AG G+A V + V L I R
Sbjct: 431 PRNPDDYIHRVGRTAR-AGREGEAITLVGQRDVQLVLAIEAR 471
>gi|383455776|ref|YP_005369765.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
gi|380732540|gb|AFE08542.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
Length = 484
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 198/397 (49%), Gaps = 29/397 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL +D +++++K + + P+ IQA A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLTDSLLKAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELASQV + + K +P R VV GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELASQVSDSFATYGK-NLPLRHAVVFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + LI +G + L L +LDE D + D F ++ +I
Sbjct: 117 QVQALRQGVDILVATPGRLLDLIDQGFVTLRALEVFVLDEADRML-DMGFIHDVRRVIKV 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + + P +SP + D S +
Sbjct: 176 LPPVRQTLFFSATLPPDIMDLARNILKE------PVRVEVSPA------SSTADTVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K++ L L++ + + + +VF +V L VR H
Sbjct: 224 YFVEREEKRALLTHLLQDAKAIPRALVFTRTKHGANRVAKQL-----TAAGVRADAIHGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + EF R+ R+ LV TD A+RGID G+ HV +D P P +YV R+G
Sbjct: 279 KSQNARERALDEF---RAGTLRV-LVATDIAARGIDIDGLSHVFNYDLPNVPEQYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
RT R AG +G+A F ++ + + I R+ P+
Sbjct: 335 RTGR-AGASGQAVSFCDSEERAYLRDIERTIRRSVPV 370
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 199/379 (52%), Gaps = 37/379 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNQQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + L+ + + L ++ +LDE D + D F ++ +I+
Sbjct: 117 TQERALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRML-DMGFIHDVKRIIA 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI +LV+ + P I+P V + +++
Sbjct: 176 KMPSKKQTLFFSATMPAEI-TQLVQTL-----LHNPVKVEITP------VSST----AER 219
Query: 508 TPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
++ +L NK+ L +L++ S + +VF T R + + + ++ +
Sbjct: 220 IEQSVYLLETGNKQQQLNELMKDSSIVSALVFTR---TKRGADRVARGLNK--VNITAQA 274
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q +R + F + ++ LV TD A+RGID + HV+ F+ P P YV
Sbjct: 275 IHGDKSQTSRQTALNNFKSGATR----VLVATDIAARGIDIDELSHVINFNLPNIPETYV 330
Query: 624 RRVGRTARGAGGTGKAFIF 642
R+GRT R AG +G A F
Sbjct: 331 HRIGRTGR-AGLSGTAISF 348
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 196/415 (47%), Gaps = 38/415 (9%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FF+ +SF++LG ++ L+ P+ IQ+ + P ++E + A Q+G+GKTLAYL
Sbjct: 30 FFAAQSFQDLGVDARIVAGLREMKITTPTGIQSKSIPAILERHDVLCAAQTGTGKTLAYL 89
Query: 324 LPVIQRLRQEE-----------LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
+PV+++L ++E L G ++ G PR ++L P+ ELA QV S + LS
Sbjct: 90 VPVVEQLLRKEAAMQKEHEAKGLTGPAEVVLGRPRALVLLPSRELALQVASVAKQLSHSA 149
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432
F S +T G R+ Q N +D++I TPGR I +G + + ++DE D L
Sbjct: 150 -KFASCTITSGERKSIQQRNTARRLDLIIGTPGRVAKCISKGDFFVSRIDTVVVDEADTL 208
Query: 433 FNDE-DFEVALQSLISSSPVTA-------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
F+ + F L +++ +A Q + AT+ I L + F + +VV
Sbjct: 209 FDAKMGFRKELDAVLGPIQASAAKRNQPLQMVLAAATIRSPIDQVLKKKFGELRVVSDDK 268
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
+H+ + E V + + E L+K+ A +KT+VFC + R
Sbjct: 269 IHKTPTTIREEFVRVVPESKHSALREALHLHKRRA----------AKTMVFCRNSASVRS 318
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
E++L+ ++ + H + R + FT LVCTD A+RG+D
Sbjct: 319 TEHMLREHGFQD----AVCLHGDMPPARRHEAIHAFTEDPHVN---ILVCTDLAARGLDI 371
Query: 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659
V HVV+FDFP+ +YV R GRT R AG G V ++LA I R
Sbjct: 372 DTVKHVVMFDFPKSAVDYVHRAGRTGR-AGEQGLVTSLVTKHDLALAMSIENSKR 425
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 188/382 (49%), Gaps = 46/382 (12%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++K+F+ LG S +I +L Q P++IQ+ A P V+ G +A ++GSGKTL+YLLP
Sbjct: 351 NKKTFESLGLSPALIAALAEQEITTPTRIQSRALPQVLAGHDTGIAAETGSGKTLSYLLP 410
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+++ +++ + QG G PR +IL P LA QV + + L K V F + V GG R
Sbjct: 411 IVEGIKKSDAQG-DFVRPGRPRALILVPHRLLAMQVANVSKRLGKA-VKFSTFCVMGGDR 468
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE---DFEVAL 442
Q +++ +DV++ATP R + L++ + L +++ +LDE D LF ++ + L
Sbjct: 469 ISRQKSAMEKPLDVMVATPQRLLELLQNKYVSLADVKYLVLDEADALFEEQFLAEITTVL 528
Query: 443 QSLI-------SSSPVTA------------QYLFVTATLPVEIYNKLVEVFPDCKVVMG- 482
+ LI +S+ A Q +FV AT + + + FP +
Sbjct: 529 RPLIERRKAIVASAEAEAQGQAPQRTFTPLQVMFVCATKMQHLVQAIRQYFPFGHIAAAT 588
Query: 483 -PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVT 541
P +HR L +D G + K S L +L +K S T++FC+ + +
Sbjct: 589 TPTLHRALANLNHRFIDVVGT-----------IGKLSELKELAKKGFKSPTLIFCDGLES 637
Query: 542 CRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRG 601
V + L F K R H+ + RL K F SK LVCTD A+RG
Sbjct: 638 VTWVHHRLSEFGIKAER-----LHSQIQHRDRLTIWKSFLQGESK----VLVCTDLAARG 688
Query: 602 IDFAGVDHVVLFDFPRDPSEYV 623
+D V+HVV+FD PR SEYV
Sbjct: 689 LDAPMVEHVVMFDPPRSHSEYV 710
>gi|398820506|ref|ZP_10579026.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
gi|398228828|gb|EJN14930.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
Length = 524
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 197/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 132 QVRALMPGVDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 191 LPIRRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTAERINQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ F K + L +L+++ V++ +VF KV L++ + H
Sbjct: 238 IIQVDFSAKPAFLAKLLKQEQVNRALVFTRTKHGADKVVKTLEKAG-----IAASAIHGN 292
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F RS E R LV TD A+RGID G+ HV+ FD P P YV R+G
Sbjct: 293 KSQNHRERTLAQF---RSGEIRT-LVATDIAARGIDVDGITHVINFDLPNVPETYVHRIG 348
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 349 RTAR-AGAEGTAISLVAGGEEFAYLRDIER 377
>gi|401411581|ref|XP_003885238.1| ATP-dependent RNA helicase DDX55,related [Neospora caninum
Liverpool]
gi|325119657|emb|CBZ55210.1| ATP-dependent RNA helicase DDX55,related [Neospora caninum
Liverpool]
Length = 569
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/431 (29%), Positives = 215/431 (49%), Gaps = 53/431 (12%)
Query: 247 EPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
E DC ++ K FFS +F+ L + + ++L R ++IQA A P ++EG+
Sbjct: 65 EQQDC-RKTEKAPGKDSFFSDVAFESLDICEPVKKALAEMKMERLTEIQAKAIPRLLEGR 123
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+ A ++GSGKTLA+L+P ++ L Q ++ L ++ +G V++++PT EL+ Q+
Sbjct: 124 DVLGAAKTGSGKTLAFLVPAVELLYQ--VKFLPRNGTG---VIVISPTRELSLQIFDVAA 178
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAI 425
LSK +P +V GG +K ++E LQ+GV++L+ATPGR + L Q NL +
Sbjct: 179 ELSKF-LPQTLGLVIGGANRKHEVEKLQKGVNILVATPGRLLDHLQNTKGFQYSNLLSLV 237
Query: 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN---------KLVEVFPD 476
+DE D + FE + +++ P T Q +AT ++ + VEV
Sbjct: 238 IDEADRILQI-GFEEEMNAILQMLPQTRQTCLFSATQSAKVADLARLSLKKPVFVEVKDT 296
Query: 477 CKVVMGPGM-HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF 535
V G + + P E FL+ L ++K+ K +VF
Sbjct: 297 VATVRGIQQGYVVCPAEERFLL----------------------LFTFLKKNREKKIMVF 334
Query: 536 CNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT 595
+ ++ R + + D T + H Q R++ +F + + L+CT
Sbjct: 335 FSSCMSVRFHDELFNYIDLPTTCI-----HGKKKQNARMSTYYDFCNAE----KGILLCT 385
Query: 596 DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
D A+RG+D VD +V +D P DP EY+ RVGRTARGAGGTGKA +F++ +++ + +
Sbjct: 386 DVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFLMAEEIGFLRYL- 444
Query: 656 ERNRKGHPLHD 666
+ G PL++
Sbjct: 445 --KQAGVPLNE 453
>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 425
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 31/376 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++K Q + PS IQAMA P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E K+ S + R ++L PT ELA+QV N + S+ +P R+ VV GG +
Sbjct: 62 LLSKGE-----KARSNNVRALVLTPTRELAAQVHENAAAYSQ-NLPLRAEVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L + + L +LDE D + D F ++ ++
Sbjct: 116 QMMKLRRGVDVLVATPGRLLDLFSQNAISFKQLEILVLDEADRML-DMGFIHDIKRILKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I V D V + + + L+ DK+
Sbjct: 175 LPKERQTLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPV------DKS 228
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KKSA L+ LI+ +S+ +VF ++ + ++ + H
Sbjct: 229 -------KKSAALKFLIQSRDLSQVLVFSRTKHGANRLATLFQK-----AGIEAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F +S E R+ LV TD A+RGID + HVV FD P P++YV R+G
Sbjct: 277 KSQGARTKALAGF---KSGEIRV-LVATDIAARGIDIDQLPHVVNFDLPNVPADYVHRIG 332
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG TG+A V
Sbjct: 333 RTGR-AGATGEAISLV 347
>gi|365858292|ref|ZP_09398238.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
gi|363714432|gb|EHL97942.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
Length = 457
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 185/374 (49%), Gaps = 30/374 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ +L ++ + P+ IQA A P V+ G+ + Q+G+GKT A+ LP++
Sbjct: 4 FAALGLAEPILRALAQEGYSTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPLLHH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G R +IL+PT ELASQ+ N R + + S V+ GG + Q
Sbjct: 64 LADRR----APAPRGGCRALILSPTRELASQIHDNIRGYGRF-LGLTSAVIFGGVGARPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GVD+L+ATPGR ++ G +L + +LDE D + D F A++ L S
Sbjct: 119 VEALRRGVDILVATPGRLQDHVQTGAAKLQGVEVLVLDEADQML-DRGFWPAVKRLSSVM 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q LF +AT+P EI E+ D KV + P + + +E+ L+
Sbjct: 178 SKNRQTLFFSATMPAEIAKIAGEMLKDPAKVSVTP-VSSTAERVEQRLIHIDASL----- 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K++ L +L+ + + + +VF T + + K + + H
Sbjct: 232 -------KRNLLSELLREPGIGRALVFAR---TKHGADRVAKHLNADGIPAHAI--HGDR 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF T R+ LV TD ASRGID GV HV FD P P YV R+GR
Sbjct: 280 SQGQRERALAEFRTGRAP----ILVATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
TAR AG +G+A F
Sbjct: 336 TAR-AGASGEAIAF 348
>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 793
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 192/389 (49%), Gaps = 32/389 (8%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R F +LG S+ ++ +++ + P+ IQA A P V++G + Q+G+GKT ++ LP+
Sbjct: 290 RPRFADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPM 349
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+Q+L S++ + PR +IL PT ELA QV N + K + ++ GG
Sbjct: 350 LQKL------AGSRARARMPRSLILEPTRELALQVAENFKLYGKY-LRLTHALLIGGESM 402
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L GVDVLIATPGR + L G L L ++DE D + D F ++ ++
Sbjct: 403 AEQRDVLNRGVDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRML-DMGFIPDIEKIV 461
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+ EI +L + F V + ++ +EE LV D+
Sbjct: 462 ALLPAHRQTLFFSATMAPEI-RRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDE-- 518
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ L +L+ + V IVFCN+ ++ L + D + H
Sbjct: 519 ----------KRRTLKKLLRRENVQSAIVFCNRKRDVDMIQQYLTKHD-----IEAGHLH 563
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R + ++ F RS E + FLVC+D A+RGID G+ HV +D P + +YV R
Sbjct: 564 GDLAQSLRFSTLERF---RSGELK-FLVCSDVAARGIDIGGLSHVFNYDLPFNAEDYVHR 619
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG G AF + L + I
Sbjct: 620 IGRTGR-AGNEGHAFSLATPRDRRLLEAI 647
>gi|390348110|ref|XP_001199247.2| PREDICTED: probable ATP-dependent RNA helicase DDX28-like
[Strongylocentrotus purpuratus]
Length = 568
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 141/473 (29%), Positives = 229/473 (48%), Gaps = 47/473 (9%)
Query: 207 AESIDKNISDYNSRSNK-HEK-SGTKI-DRGWRS----GGSIHNLQYEPTDCPKQRHKYS 259
E I +YN N+ +EK S K+ +GW+S G L Y+ ++
Sbjct: 79 TEIISSKNKEYNHYLNQTYEKLSPPKLTSQGWKSSRSRGDYFTILAYKGNPSIAKKGDSE 138
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
A+ +F++L +I+ L + + P+ IQ A P ++ GK+ + A ++GSGKT
Sbjct: 139 AETQDTKANTFQDLKLHPSIIKGLDVMDIVTPTSIQLSAIPVILRGKNTLCAAETGSGKT 198
Query: 320 LAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
L YLLP++QRL +E Q + + G PR V+L P EL QV + L+
Sbjct: 199 LTYLLPLMQRLVEESKQTDNFTAEPGLPRGVVLVPVGELVHQVWEVAKVLADSA-GLSVQ 257
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
+ G K+ + L D++I+TPG + +++G L + ++DE D + +D
Sbjct: 258 YIDGETSLKSLEKRLSLSTDIIISTPGPIINAVRQGYGSLDCVSHIVIDESDTMLDDSFI 317
Query: 439 EVALQSLIS-----------SSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGM 485
+ L+ L ++P AQ V AT+P + N L E+ P + +V+ P +
Sbjct: 318 QQTLKILKRVNVGEGKACKVTAPGEAQLTMVGATMPRKATNILAEIIPPENLEVISTPHV 377
Query: 486 HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK--TIVFCNKIVTCR 543
HRI P + + + + ++ K +L+L+++ + T+VFCN TC
Sbjct: 378 HRIMPHVHQKFLRLHSEDKALK------------ILELVKREQKRRVPTMVFCNMASTCD 425
Query: 544 KVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGID 603
+ +IL E + L H+ + ++R M+ F +S EA + LVC+D ASRG+D
Sbjct: 426 WLAHIL-----TENGIPALRLHSKMGGKSRSGVMEAF---KSGEAHI-LVCSDIASRGVD 476
Query: 604 FAGVDHVVLFDFPRDPSEYVRRVGRTAR-GAGGTGKAFIFVVGK-QVSLAQRI 654
V HVV FDFP S+Y+ R GR R G+ G+G FVV K V L +I
Sbjct: 477 TVQVQHVVNFDFPPFMSDYIHRAGRVGRVGSQGSGHVPHFVVHKWDVELVNKI 529
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 206/403 (51%), Gaps = 40/403 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++ +L ++ + P+ IQA + P +++GK + Q+G+GKT A+ LP++ R
Sbjct: 4 FSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + +++ G+ RV++LAPT ELA+Q+ + R+ + + R+ VV GG Q
Sbjct: 64 LSKSQ----TRTPKGACRVLVLAPTRELAAQIGESFRAYGRF-LNVRTAVVVGGVAPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GV+VL+ATPGR + + G L L ++ +LDE D + D F ++ +I
Sbjct: 119 IKAITPGVEVLVATPGRLLDHVDSGKLSLKHVEVVVLDEADHML-DLGFLPPIKRIIKML 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P +I ++ D KV + P + QE +
Sbjct: 178 PRDRQNLFFSATMPTQIGQLAGDMLSDPVKVSVTP---------------VATTQE--RV 220
Query: 509 PETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
++ +L K+ L +L++ +T+VF T R + + + + ++
Sbjct: 221 EQSVYLIERTRKRQLLAELLDNPAFKRTLVFTR---TKRGADRVARHLE--ANKISAAAI 275
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F K+ ++ LV TD A+RGID V HVV F+ P P YV
Sbjct: 276 HGNKSQNQRERALNAF-----KDGQINVLVATDIAARGIDVDSVTHVVNFELPNVPESYV 330
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
R+GRTARG G +G A F ++ L + I + R+ P+ D
Sbjct: 331 HRIGRTARG-GASGSAIAFCDEEERGLLRDIEKTTRQSIPVID 372
>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 428
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/401 (32%), Positives = 207/401 (51%), Gaps = 30/401 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+L + +I +++ + P++IQ A P + G + Q+G+GKT AYLLPV+
Sbjct: 3 KTFKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ + Q + R ++LAPT EL Q+ L+K R + + GG K
Sbjct: 63 MKVKYAQGQNM--------RALVLAPTRELVMQIHEAAVGLAKY-TDLRMVALYGGLGPK 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ+ENL++GVD++IATPGRFM L + G + + +L+ ILDE D + D F ++ ++
Sbjct: 114 TQMENLKKGVDIIIATPGRFMDLYRMGEIPVKSLQYLILDEADKMM-DMGFMPQIRQILE 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P + L +AT + +L E F + P ++P + +Q +
Sbjct: 173 VIPRKRKNLLFSATFQPRV-ERLSEEFLEA-----PYKIEVTPSAT---AASTVEQHIYR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
P F K + L L E + + + I+FC V L+R ++RVL HA
Sbjct: 224 LPN--FKTKINLLGYLFENTEIPRAIIFCRTKAVADNVYKFLERKVIGSGKIRVL--HAN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q TR+ + +F +S E ++ LV TD A+RGID +GV HV+ FD P +YV R+G
Sbjct: 280 KGQNTRINAINDF---KSGEIQV-LVSTDVAARGIDVSGVSHVINFDVPLVYEDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
RT R A G A FV+ + +RI + R +P+ ++P
Sbjct: 336 RTGR-AKSEGIALTFVLKHEEFHIERIEKLIR--NPIPELP 373
>gi|442320812|ref|YP_007360833.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
gi|441488454|gb|AGC45149.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
Length = 497
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 196/396 (49%), Gaps = 28/396 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++ ++K + + P+ IQA A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K +P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGESFMTYGK-NLPLRHAVIFGGVGQGA 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++LQ GVDVL+ATPGR + L+ +G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQSLQRGVDVLVATPGRLLDLMDQGYVSLRSLEVFVLDEADRML-DMGFIHDVRKVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI + + D P ++P V + + + +
Sbjct: 176 LPSKRQTLFFSATMPPEIVDLSRNLLTD------PVRVEVTP------VSSTAETVAQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L L++ +S+ +VF +V L + + V H
Sbjct: 224 FFVEREQKRGLLTHLLKDGKISRALVFTRTKHGANRVAKQL-----EGSGVSAAAIHGNK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + +F RS R+ LV TD A+RGID G+ V+ +D P P +YV R+GR
Sbjct: 279 SQNARERALDDF---RSGTLRV-LVATDIAARGIDIDGLSFVINYDLPNVPEQYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
T R AG G A F ++ + + I R+ P+
Sbjct: 335 TGR-AGAQGTALSFCDAEERAYLRDIERTIRRSVPV 369
>gi|326470936|gb|EGD94945.1| ATP-dependent RNA helicase DBP8 [Trichophyton tonsurans CBS 112818]
gi|326478499|gb|EGE02509.1| ATP-dependent RNA helicase DBP8 [Trichophyton equinum CBS 127.97]
Length = 528
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 197/402 (49%), Gaps = 43/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SLK RP+ IQ P +++G+ CI ++GSGKT+A+ P++
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ G+ VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 160 KWSEDPF-GIY--------AVILTPTRELALQIFEQVKAIS-APQSLKPLLITGGSDMRP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR IK + I+ L +R +LDE D L D
Sbjct: 210 QAIGLSQRPHIVIATPGRLADHIKSSGEDTIIGLRRVRMVVLDEADRLLTSGPGSMLPDV 269
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L SS Q L TAT+ E+ + ++ P K P + E +
Sbjct: 270 ETCLSALPPSS--DRQTLLFTATVTPEV--RALKSMPRAK--NKPPIFVTEISTENTTIP 323
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ Q + P LN + A L ++ E + TI+FCN+ T +E IL+R
Sbjct: 324 PTLKQTYLQVP----LNHREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSH- 378
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
RV H+ L Q R+AN+ F R+ ARL LV TD A+RG+D V V+ +D
Sbjct: 379 ----RVTSLHSLLPQSERIANLSRF---RASAARL-LVATDVAARGLDIPSVGLVINYDV 430
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +Y+ RVGRTAR AG G+A V + V L I R
Sbjct: 431 PRNPDDYIHRVGRTAR-AGREGEAITLVGQRDVQLVLAIEAR 471
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/382 (32%), Positives = 196/382 (51%), Gaps = 36/382 (9%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R +FK LG SD +I L Q P+ +Q A P V+EG+ I Q+G+GKTLA++LP+
Sbjct: 21 RLNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPI 80
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++++ ++GS + +I+ PT ELA Q+ S + L + + V GG
Sbjct: 81 LEKI---------DPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDV 131
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL LQ +++ATPGR + ++ G +QL + +LDE D + + F ++ +I
Sbjct: 132 EKQLHKLQRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHI-GFLNEMELII 190
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S +P + Q + +AT+P +I KL + K + P RI + F+ + + +Q +
Sbjct: 191 SQTPASRQTMLFSATMPDDI-RKLSK-----KHLKEPESIRIE---KTFVPEKAIEQLAI 241
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK--RFDRKETRVRVLPF 564
T + A K++AL+ I + I+FC I K+ + LK RF +E
Sbjct: 242 FTTDRA---KQNALISRIREDRPFLAIIFCRTIRRATKLYDALKSQRFSCEE-------L 291
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H L Q R MK+F + + FL+ TD A+RG+D GV HV +D P+D YV
Sbjct: 292 HGDLTQAKREKVMKKFRNAEIQ----FLIATDVAARGLDVEGVTHVYNYDIPQDSESYVH 347
Query: 625 RVGRTARGAGGTGKAFIFVVGK 646
R+GRT R AG G A F K
Sbjct: 348 RIGRTGR-AGKDGLAVTFYAEK 368
>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase [Halothermothrix orenii H 168]
gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
168]
Length = 527
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 203/401 (50%), Gaps = 34/401 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S ++++++ F + IQ A PP++ GK I Q+G+GKT A+ +P++++
Sbjct: 6 FSELNISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEK 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + P+ +IL PT ELA QV + L+K ++ V GG K Q
Sbjct: 66 I---------DTRNKKPQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GV V+I TPGR M ++ G L L ++ +LDE D++ D F +++++
Sbjct: 117 IKALKKGVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVML-DMGFIDDIKTILKDI 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P I + L + + + +++ PG+E++ + + SDK
Sbjct: 176 PNDRQTLFFSATIPETILD-LSKRYQKKSQFIKIAHEKLTVPGIEQYYYEV---RRSDKL 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L +LI+ +++FCN T + VE + + + L H
Sbjct: 232 ---------KVLTRLIDLYSPGLSLIFCN---TRKMVEELNIQLQARGYLSDAL--HGGF 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q R M +F + LV TD A+RGID GV+ V +D P+D YV R+GR
Sbjct: 278 NQNQRDRVMDKFRNGIIE----ILVATDVAARGIDVNGVEAVFNYDVPQDTDYYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
T R AG TGKAF FVVGK + + I + + D+P+
Sbjct: 334 TGR-AGKTGKAFTFVVGKDIYKLRDIQKYTKTRIIKQDIPT 373
>gi|374572806|ref|ZP_09645902.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374421127|gb|EHR00660.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 505
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 198/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 183 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIQQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ F K + L QL+++ V++ +VF KV L++ + H
Sbjct: 230 IIQVDFSAKPAFLAQLLKQEQVNRALVFTRTKHGADKVVKTLEKAG-----IPASAIHGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F R+ E R LV TD A+RGID G+ HV+ FD P P YV R+G
Sbjct: 285 KSQNHRERTLAQF---RTGEIRT-LVATDIAARGIDVDGITHVINFDLPNVPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 341 RTAR-AGAEGTAISLVAGGEELSYLRDIER 369
>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 497
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 183/386 (47%), Gaps = 38/386 (9%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D +R +F +LG S ++++++ + P+ IQA A P V+ K I Q+G+GKT ++
Sbjct: 31 DILNRMTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASF 90
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVV 380
+LP+I ++ + + PR +IL PT ELA+QV N K G + ++
Sbjct: 91 VLPMI------DVMAAGRRRALMPRSLILEPTRELAAQVAEN---FEKYGANHDLKMALL 141
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG + QL+ L EGVDVLIATPGR M L + G + L ++DE D + D F
Sbjct: 142 IGGVQMGDQLKTLDEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRML-DMGFIP 200
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ + P T Q + +AT+P I + + K + + + F V
Sbjct: 201 DIEFICDKLPETRQTMLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVK 260
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETR 558
Q K+ L L+ V I+F N+ T R++ L+R F E
Sbjct: 261 ARQ------------KRDTLEWLLANDQVETAIIFANRKTTVRELNKHLQRQGFASGE-- 306
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
H +DQ +RL + F + LV +D A+RG+D GV HV FD P
Sbjct: 307 -----IHGDMDQSSRLKELDRFKSGDVN----ILVASDVAARGLDIKGVSHVFNFDTPWH 357
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVV 644
P +YV R+GRT R AG G+AF V
Sbjct: 358 PDDYVHRIGRTGR-AGAKGRAFTLVA 382
>gi|443725222|gb|ELU12902.1| hypothetical protein CAPTEDRAFT_112901 [Capitella teleta]
Length = 515
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 198/400 (49%), Gaps = 42/400 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++E L + +P+ +Q A P ++ G + I A ++GSGKTLA+LLP++
Sbjct: 110 SFSDLGIHPELVEQLTKFKINQPTNVQQKAIPEILSGYNVICAAETGSGKTLAFLLPMLH 169
Query: 329 R-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R L ++ + S++ +P +IL P+ ELA Q+ R L G+ +VTGG +
Sbjct: 170 RILELKKTKFFSETPPNTPHGLILTPSRELADQIHGVTRDLCHEGINIHPHLVTGGRGTQ 229
Query: 388 TQLE-NLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
L+ Q +DVLI TPG L+ G++ L+ +LDE D L D+ F + SLI
Sbjct: 230 NILKWKPQSAMDVLITTPGICTKLLTNGLVNPSLLQTLVLDEADTLL-DDSFSTLVLSLI 288
Query: 447 ----------------SSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRI 488
SSS V Q V+AT+P ++ L ++ P K+V +HRI
Sbjct: 289 KRLRISSEKPLNPSAESSSVVGTQVALVSATMPRDLQKILADIVPFDSMKLVQTNHLHRI 348
Query: 489 SPGL-EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVEN 547
P + ++F+ +GD K L++ ++K IVF N+ T + +
Sbjct: 349 MPHVSQKFMRLKAGD-------------KLVQLVKHLKKKSNLNYIVFTNQSKTAQFISY 395
Query: 548 ILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607
L +E + FHA + Q+ R EF ++ + + LVCTD ASRG+D
Sbjct: 396 YL-----RENGIDNTLFHANMAQKVREGRFSEFQSNEPNSSNV-LVCTDVASRGLDTIHA 449
Query: 608 DHVVLFDFPRDPSEYVRRVGRTARGAGG-TGKAFIFVVGK 646
HV+ FDFP S+Y+ RVGR R A +G A FV K
Sbjct: 450 HHVINFDFPNFVSDYIHRVGRVGRVASTQSGFALSFVSAK 489
>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 513
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 188/376 (50%), Gaps = 31/376 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQA A P ++G+ + Q+G+GKT A+ LP+I R
Sbjct: 4 FSDLGLSPATLKAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR +++APT ELA QV ++ + G ++ GG K Q
Sbjct: 64 L------AAGRAKARMPRALVIAPTRELADQVSASFEKYA-MGQKLTWALLIGGVSFKDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F L+ + +
Sbjct: 117 EQKLDRGVDVLIATPGRLLDHFERGKLLMTGVQIMVVDEADRML-DMGFIPDLERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + ++LV + P
Sbjct: 176 PAKKQTLFFSATMPPEITRLTKQFLNDPVRIEASRPATTAETITQYLV---------RIP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPFHAA 567
K++AL +LI ++ ++ IVFCN+ V LK+ FD H
Sbjct: 227 SADPKAKRTALRELIGRAEINNGIVFCNRKTEVDIVAKSLKKHGFD-------AAAIHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ TR+ ++ F R+ E +L L +D A+RG+D V HV FD P +YV R+G
Sbjct: 280 LDQATRMRTLESF---RNGELKL-LCASDVAARGLDIPAVSHVFNFDVPHHADDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG TG+AF+ V
Sbjct: 336 RTGR-AGRTGEAFMIV 350
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/424 (29%), Positives = 210/424 (49%), Gaps = 46/424 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ ++ + F P+ +Q A P V+ GK + + Q+G+GKT A++LP +Q
Sbjct: 4 TFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTLQ 63
Query: 329 RLRQEELQGLSK------------------------STSGSPRVVILAPTAELASQVLSN 364
R+ E+ K + PR +I+ PT ELA+Q+ +
Sbjct: 64 RIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNV 123
Query: 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424
+S+ ++++VTGG K Q+ LQ+G DVL+ATPGR + L+ + L +++
Sbjct: 124 AKSVC-ASTGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVL 182
Query: 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
+LDE D + D F ++ ++ P Q L +ATLP I + + + D + +
Sbjct: 183 VLDEADRML-DMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIAR 241
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
+ + +E+ L + Q+ P+ AL+ + +P + +VFC T +
Sbjct: 242 TGQTAATIEQHLCSVTQGQK----PQLL-----KALIDSFDPAP-ERVLVFCR---TKSR 288
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
V++I K +V V+ HA Q+ R + F RS ++ LV TD SRGID
Sbjct: 289 VDSIYKNLKAAGLKVDVM--HADRPQKARAKALDRF---RSASIQI-LVATDVMSRGIDI 342
Query: 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
G+D V+ FD P DP +YV R+GRT R AG TG+A+ F+ +V+ + I + P
Sbjct: 343 QGIDVVINFDVPLDPEDYVHRIGRTGR-AGATGQAYTFMGPDEVTPLREIEYFTKALVPA 401
Query: 665 HDVP 668
D+P
Sbjct: 402 WDLP 405
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 199/402 (49%), Gaps = 36/402 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ +G + ++++L + + +P+ IQ A P V++GK + Q+G+GKT A+ LP++
Sbjct: 17 TFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++T RV++L+PT ELA+Q+ + ++ + FR V+ GG +
Sbjct: 77 RLAENRIAPKPRTT----RVLVLSPTRELATQIGDSFKAYG-AHLGFRVAVIFGGVKYGA 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q LQ+G+D+L+A PGR + I++ L L + +LDE D + D F ++ ++S
Sbjct: 132 QERALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQML-DLGFIKPIRQIVSR 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQE 504
P Q LF +AT+P EI E+ D KV + P + RIS + +V +
Sbjct: 191 IPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRIS----QSVVHVEQGR- 245
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K++ L ++ ++ +VF KV L + V
Sbjct: 246 -----------KRALLTEMFSDPEYTRCLVFTKTKHGADKVAAYL-----EAGGVEAGAI 289
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + F + + LV TD A+RGID GV HVV F+ P P YV
Sbjct: 290 HGNKSQPQRERTLDAFKKGKLR----VLVATDIAARGIDVDGVSHVVNFELPHVPEAYVH 345
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
R+GRTAR AG G A FV G ++ L + I + R+ P D
Sbjct: 346 RIGRTAR-AGADGTAISFVAGDEMKLLKDIEKVTRQKIPAID 386
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +L+R+ + P+ +QA + P +++G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L + + R +ILAPT ELA+Q+ + RS P ++V GG +
Sbjct: 62 RL----LADKRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIV-GGVSHRP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L G+DVL+ATPGR + + G L+L +LDE D + D F V ++ +++
Sbjct: 117 QNEMLARGLDVLVATPGRLLDHLGSGRLRLATTEVLVLDEADHML-DLGFIVPIRQIVAK 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P EI ++ D KV + P + + G
Sbjct: 176 LPKQRQTLLFSATMPREISALADDMLRDPAKVSVTPAATTAERVAQHVYLVSGG------ 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K+ L++L+ +S+ IVF T R + + + + V H
Sbjct: 230 -------AKRDLLVELLNDREISRAIVFTR---TKRGADRVAQHLE--SAGVGADAIHGN 277
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q RL + F R++ LV TD A+RGID GV HVV F+ P YV R+G
Sbjct: 278 KSQSQRLRALDGFRKGRTR----VLVATDIAARGIDVDGVTHVVNFELPEVAEAYVHRIG 333
Query: 628 RTARGAGGTGKAF 640
RTAR AG TG+A
Sbjct: 334 RTAR-AGATGQAI 345
>gi|340777398|ref|ZP_08697341.1| DNA/RNA helicase [Acetobacter aceti NBRC 14818]
Length = 736
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 126/392 (32%), Positives = 193/392 (49%), Gaps = 36/392 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ +F +LG S+ ++ ++ ++ P+ IQA A P V+ G+ + Q+G+GKT ++ LP
Sbjct: 234 SQITFADLGLSEPILRAVTEMGYVHPTPIQAQAIPAVLHGQDVLGVAQTGTGKTASFTLP 293
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ E+ S++ + PR +IL PT ELA QV N + K + ++ GG
Sbjct: 294 ML------EILSGSRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGES 346
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q E L +GVDVLIATPGR + L + G L L R ++DE D + D F ++ +
Sbjct: 347 MADQKEVLNKGVDVLIATPGRLLDLFERGGLLLTQTRILVIDEADRML-DMGFIPDIEKI 405
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ P Q LF +AT+ EI +L + F P V P ++ +E L+ D
Sbjct: 406 VGLLPANRQTLFFSATMAPEI-RRLADAFLHSPKQITVSRPST--VATTIETGLIVVDED 462
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+K+ L +L+ + IVFCN+ R V+ +LK + L
Sbjct: 463 ------------DKRKVLRKLLRAENLQNAIVFCNR---KRDVDVLLKSLLKHGFSAGAL 507
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H L Q R +++F + K LVC+D A+RGID G+ HV FD P +Y
Sbjct: 508 --HGDLPQSVRFQTLEKFKSGELK----ILVCSDVAARGIDIGGLSHVFNFDLPFHAEDY 561
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRT R AG GKA+ LA+ I
Sbjct: 562 VHRIGRTGR-AGKEGKAYSLATPYDRKLAEAI 592
>gi|452751177|ref|ZP_21950923.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
gi|451961327|gb|EMD83737.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
Length = 591
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 36/379 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S + E++ + + P+ IQA A P + G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FNDFNLSPKIAEAVASEGYETPTPIQAQAIPIGLSGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K T +PRV++LAPT ELA+Q+ + R+ + + V GG + Q
Sbjct: 64 LAEEPY----KLTPKAPRVLVLAPTRELATQIAESFRTYGRK-LRLNIETVFGGVKDGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVD+L+ATPGR + LI + L L ++ +LDE D + D F AL+ ++
Sbjct: 119 KRRLAAGVDILVATPGRLLDLIDQRALSLHEVQVLVLDEADQML-DLGFIHALRKIVPMV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+P +I + + KV + P S E C+
Sbjct: 178 PKTRQTLFFSATMPKQISELAGKYLTNPAKVEVQP----ESTTAERVEQRCT-------- 225
Query: 509 PETAFLN--KKSALLQL-IEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
F+N +K ALL L +E++ + +VF +V L+ D +R H
Sbjct: 226 ----FVNAKEKQALLTLTLERTEFDRVLVFTRTKHGADRVVRNLEGAD-----IRSAAIH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F + + LV TD A+RGID +GV HV+ F+ P P +YV R
Sbjct: 277 GNKSQAQRTRALDAFREGKVR----VLVATDIAARGIDISGVSHVINFEIPEVPEQYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVV 644
+GRTAR AG G+A FV
Sbjct: 333 IGRTAR-AGADGEAISFVA 350
>gi|302508367|ref|XP_003016144.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
112371]
gi|291179713|gb|EFE35499.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
112371]
Length = 528
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 131/402 (32%), Positives = 197/402 (49%), Gaps = 43/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SLK RP+ IQ P +++G+ CI ++GSGKT+A+ P++
Sbjct: 100 SFSSLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAGPILH 159
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ G+ VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 160 KWSEDPF-GIY--------AVILTPTRELALQIFEQVKAIS-APQSLKPLLITGGSDMRP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR IK + I+ L +R +LDE D L D
Sbjct: 210 QAIGLSQRPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDV 269
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L SS Q L TAT+ E+ + ++ P K P + E +
Sbjct: 270 ETCLSALPPSS--DRQTLLFTATVTPEV--RALKSMPRAK--NKPPIFVTEISTENTTIP 323
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ Q + P LN + A L ++ E + TI+FCN+ T +E IL+R
Sbjct: 324 PTLKQTYLQVP----LNHREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSH- 378
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
RV H+ L Q R+AN+ F R+ ARL LV TD A+RG+D V V+ +D
Sbjct: 379 ----RVTSLHSLLPQSERVANLSRF---RASAARL-LVATDVAARGLDIPSVGLVINYDV 430
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +Y+ RVGRTAR AG G+A V + V L I R
Sbjct: 431 PRNPDDYIHRVGRTAR-AGREGEAITLVGQRDVQLVLAIEAR 471
>gi|452822401|gb|EME29421.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 410
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 36/375 (9%)
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR-QEELQGLSKSTSGSPRVV 349
P+ IQ A P + G + I+ ++GSGK+LAYL+P+I+RL+ QEELQ + PR +
Sbjct: 39 PTAIQRKAIPAISGGANVIVGAETGSGKSLAYLIPIIERLKLQEELQSFIRKPK-KPRAL 97
Query: 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG---FRQKTQLENLQEGVDVLIATPGR 406
+ PT EL Q+L ++LS + FR++ + GG F Q Q ++L+E VD+++ +P R
Sbjct: 98 VFVPTRELGEQLLRVLKALSH-HIKFRAVSLLGGRLSFVQ--QKKSLEENVDIVVCSPSR 154
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV---TAQYLFVTATLP 463
+ G + ++R +LDEVD L D DF L L++ P Q++ V AT P
Sbjct: 155 LVKHAVSGNIYFGDIRFIVLDEVDALLGD-DFVRDLDVLLAKLPKKEEKIQFIAVGATHP 213
Query: 464 VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
+++ + P+ K+V +H + + V+ GD D T E +LLQ
Sbjct: 214 KQVFPIYEKYLPNAKLV-NDKLHLLPVNTKHVFVNIQGD---DATQELI------SLLQQ 263
Query: 524 IEKSPVSKT----IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
E+ +T IVFCN + +CR VE+ L E + +H + + R A E
Sbjct: 264 EEEKENPRTSNRIIVFCNTVASCRFVEHYL-----SERGYHTINYHGEIPPKKRKALFSE 318
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639
F T + + L+CTD +RG+D V+ V+ F+FP +Y+ R GRT R AG +GK
Sbjct: 319 FLTQK----HVILICTDVGARGLDNVSVNLVLNFEFPTCVVDYIHRAGRTGR-AGNSGKV 373
Query: 640 FIFVVGKQVSLAQRI 654
F+ K +SLA+ I
Sbjct: 374 VSFIRKKDLSLARAI 388
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 197/409 (48%), Gaps = 37/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S ++ ++ + + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RL-----TASAPRKKGAIRALILTPTRELALQIGESFEAYGKY-LTLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+LIA PGR L+ +G+L L N+ +LDE D + D F ++ +I+
Sbjct: 116 QVAALKKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI + D P ++ P V + D+
Sbjct: 175 LPRQRQNLMFSATMPKEIEQLAAGILHD------PAFVKVDP------VSSTVDRIQQSL 222
Query: 509 PETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
NKK L LI+ K V +VF T + I K +++ + H
Sbjct: 223 YFVEKGNKKFLLPWLIKNLKPEVVNALVFSR---TKHGADKIAKDLNKQG--IPAAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ +++F +++ LV TD A+RGID + + HV +D P P YV R+
Sbjct: 278 NKSQTARVTALEDFKAGKTR----VLVATDIAARGIDISELSHVFNYDLPEVPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLHDVPS 669
GRTAR AG G A F ++ I + NR+ GHP VP+
Sbjct: 334 GRTAR-AGADGTAVSFCAPEEKEYLAGIEKLNRRQIPVVSGHPWDGVPA 381
>gi|456358119|dbj|BAM92564.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain,
RhlE protein [Agromonas oligotrophica S58]
Length = 471
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 194/378 (51%), Gaps = 30/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + G++VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGLEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL+++ PV++ +VF T + ++K ++ + + H
Sbjct: 224 VIQVDHSAKPNLLAQLLKQEPVNRALVFTR---TKHGADKVVKSLEKAGIPAQAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 279 KSQNHRERTLAAF---RTGEIRT-LVATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVG 645
RTAR AG G A V G
Sbjct: 335 RTAR-AGAEGVAISLVAG 351
>gi|347760106|ref|YP_004867667.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579076|dbj|BAK83297.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 568
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 193/388 (49%), Gaps = 36/388 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+ + ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 97 FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPML-- 154
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E LQG S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 155 ---EILQG-SRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGESMAEQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L + G L L + ++DE D + D F ++ ++S
Sbjct: 210 KEVLNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRML-DMGFIPDIEKIVSML 268
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q LF +AT+ EI +L + F P V P ++ +E L G
Sbjct: 269 SPLRQTLFFSATMAPEI-RRLADAFLRNPKEITVSRPS--SVASTIETGLAIVDGK---- 321
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+K+ AL +L+ +S + IVFCN+ R V+ + K + V L H
Sbjct: 322 --------DKRRALRKLLRESDMQNAIVFCNR---KRDVDVLCKSLLKHGFSVGAL--HG 368
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R + ++ F + K LVC+D A+RGID G+ HV FD P +YV R+
Sbjct: 369 DLAQSVRFSTLEAFKSGELK----ILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRI 424
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG TG A+ + +LAQ I
Sbjct: 425 GRTGR-AGRTGHAYSLATPDEEALAQAI 451
>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 499
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 196/406 (48%), Gaps = 35/406 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG SD ++ ++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 3 FNELGLSDKVLSAVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q ++ + PR +IL PT ELA+QV N K ++ GG Q
Sbjct: 63 LEQ------GRARARMPRTLILEPTRELAAQVEENFTKYGK-NHKLNVALLIGGVSFGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVDVLIATPGR + ++ G L L + ++DE D + D F ++ +
Sbjct: 116 DAKLLRGVDVLIATPGRLLDHVERGRLLLSGIEILVIDEADRML-DMGFIPDIERVCKLV 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+P EI + + + V + + +FLV C +
Sbjct: 175 PFTRQTLFFSATMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKED------ 228
Query: 510 ETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L +LI + + I+FCN+ V LKR V+ H +
Sbjct: 229 ----FAKRETLRELINSADNLQNGIIFCNRKSEVAVVHKSLKRHG-----FNVVALHGDM 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ +R+ + +F R+ EA L LV +D A+RG+D V HV +D P +YV R+GR
Sbjct: 280 DQRSRMQALDQF---RTGEANL-LVASDVAARGLDIPAVSHVFNYDTPHHAEDYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVV---GKQVSLAQRIMERN---RKGHPLHDVP 668
T R AG +G AF V K ++ ++++ R+ R+G L +P
Sbjct: 336 TGR-AGRSGAAFTLVTPADTKSLAAIEKLIGRSIDWREGSSLDALP 380
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 199/388 (51%), Gaps = 34/388 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L ++ + +L ++ + P+ IQA A P ++ G+ + Q+G+GKT A++LPV+QR
Sbjct: 3 FEDLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +E ++ G+PR ++LAPT ELA+Q+ + + + + F V GG Q+ Q
Sbjct: 63 ISEER----RRTVPGAPRALVLAPTRELAAQIDESFGTYGQF-LQFSHAAVFGGVSQEPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GV+ L+ATPGR + L+++G + L + +LDE D + D F + ++S+
Sbjct: 118 VKALSRGVEALVATPGRLLDLMEQGHIDLKGIEFFVLDEADRML-DMGFAKDVHRIVSAL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEE--FLVDCSGDQESD 506
P LF AT+ EI + D +V + P + +E+ F VD + +
Sbjct: 177 PKKRHSLFFAATMSREIGELAGRLLKDPVRVEVAPQATPVE-SIEQRIFFVD-----QKE 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K P L+ L+++ + + +VF +V +L R + +R H
Sbjct: 231 KNP---------LLIGLLQQKFLKRVLVFTRTKRRADRVAKVLTR-----SGIRADAIHG 276
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q RLA ++ F R + LV TD A+RGID + HV+ +D P +P YV R+
Sbjct: 277 DRTQNQRLAALRGFKAGRLQ----VLVATDIAARGIDVEDISHVINYDLPNEPESYVHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG G A+ F ++ S + I
Sbjct: 333 GRTGR-AGRAGTAYSFCSAEERSFLRDI 359
>gi|237830427|ref|XP_002364511.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211962175|gb|EEA97370.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221487590|gb|EEE25822.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221507384|gb|EEE32988.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 569
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 217/441 (49%), Gaps = 58/441 (13%)
Query: 237 SGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQA 296
SG S + TD K + FFS +F+ L D + ++L R ++IQA
Sbjct: 60 SGDSAEQQGVQKTD------KATGKDSFFSDVTFESLDICDPVKKALAEMKMERLTEIQA 113
Query: 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356
+ P ++EG+ + A ++GSGKTLA+L+P ++ L Q ++ L ++ +G V++++PT E
Sbjct: 114 KSIPRLLEGRDVLGAAKTGSGKTLAFLVPAVELLYQ--VKFLPRNGTG---VIVISPTRE 168
Query: 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI 415
L+ Q+ L+K +P +V GG +K ++E LQ+GV++L+ATPGR + L
Sbjct: 169 LSLQIFDVAAELAKF-LPQTLGLVIGGANRKHEVEKLQKGVNILVATPGRLLDHLQNTKG 227
Query: 416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN------- 468
Q NL ++DE D + FE + +++ P T Q +AT ++ +
Sbjct: 228 FQYSNLLSLVIDEADRILQI-GFEEEMNAILQMLPQTRQTCLFSATQSAKVADLARLSLK 286
Query: 469 --KLVEVFPDCKVVMGPGM-HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525
VEV V G + + P E FL+ L ++
Sbjct: 287 KPVFVEVKDTVATVRGIQQGYVVCPAEERFLL----------------------LFTFLK 324
Query: 526 KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRS 585
K+ K +VF + ++ R + + D T + H Q R++ +F +
Sbjct: 325 KNREKKIMVFFSSCMSVRFHDELFNYIDLPTTCI-----HGKKKQNARMSTYYDFCNAE- 378
Query: 586 KEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVG 645
+ L+CTD A+RG+D VD +V +D P DP EY+ RVGRTARGAGGTGKA +F++
Sbjct: 379 ---KGILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFLMA 435
Query: 646 KQVSLAQRIMERNRKGHPLHD 666
+++ + + + G PL++
Sbjct: 436 EEIGFLRYL---KQAGVPLNE 453
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 196/396 (49%), Gaps = 28/396 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++ ++K + + P+ IQ A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K +P R V+ GG Q
Sbjct: 62 RLSAKAPPGGARPV----RCLVLTPTRELAGQVGESFATYGK-NLPLRHTVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ GVDVL+ATPGR + L+++G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQALQRGVDVLVATPGRLLDLMEQGCVSLRSLEVFVLDEADRML-DMGFIHDVRRVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + D P ++P + + S +
Sbjct: 176 LPSKRQTLFFSATLPPDIVDLARSILTD------PVRVEVTPA------SSTAETVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L L+++ +S+ +VF +V L + V H
Sbjct: 224 YFVEREQKRGLLTHLLKEGNISRALVFTRTKHGANRVAKQL-----EGAGVSSAAIHGNK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF RS R+ LV TD A+RGID G+ +VV +D P P +YV R+GR
Sbjct: 279 SQNARERALDEF---RSGTLRV-LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
T R AG +G A F ++ + + I R+ P+
Sbjct: 335 TGR-AGASGTAVSFCDAEERAYLRDIERTIRRNVPV 369
>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 403
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 195/391 (49%), Gaps = 44/391 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG D + ++++ +++ P+ IQA A P V++G I + Q+G+GKT A+ LP+IQ
Sbjct: 4 AFSKLGLQDALAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ST G R +IL PT ELA QV +K R +V GG
Sbjct: 64 RL----------STHGRLRCLILEPTRELALQVEEAFHKFAKF-TDLRVTIVYGGVGYGK 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L+ G+D+L ATPGR + + +G L ++ +LDEVD + D F ++ ++
Sbjct: 113 QTSDLKRGMDILAATPGRLLDHLGQGNCSLEDVEILVLDEVDRML-DMGFLPDVRKIVQR 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP P+ + + G +H + V+ + +T
Sbjct: 172 CPKARQTLFFSATLP-----------PELEQLAGWALHNPTK------VEIGRVRSPAET 214
Query: 509 PETAFL----NKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
F ++K LLQ L+E++ ++FC T + I R K V V+
Sbjct: 215 VSHGFYPVVASQKFDLLQLLLERTEFKSVLIFCR---TRMGADRIAHRLKTKGHTVGVM- 270
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H+ Q R+ + F + + + LV TD A+RG+D AGV HV+ +D P +P +YV
Sbjct: 271 -HSDRSQRERIEALDGFKSGKFE----VLVATDIAARGLDIAGVSHVINYDVPENPEDYV 325
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
R+GRT R A TG AF V + V A+ I
Sbjct: 326 HRIGRTGR-AHHTGDAFTLVTEEDVRDARSI 355
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 194/375 (51%), Gaps = 29/375 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + +++++++Q + PS IQ A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L G + S R +IL PT ELA+QV N +S S+ +P ++ VV GG
Sbjct: 62 RL----LDG-RPAASNCVRALILTPTRELAAQVEENVKSFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 116 QMKALRSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRML-DMGFIHDIKRILKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + V + +++ LV DK+
Sbjct: 175 LPTKRQTLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPI------DKS 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+TA AL+ LI+++ + +VF ++ + L R R+ H
Sbjct: 229 KKTA------ALISLIKQNGWKQVLVFSRTKHGANRIADKLSR-----ARIPSAAIHGNK 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF +S E + LV TD A+RGID + V+ D P P++YV R+GR
Sbjct: 278 SQGARTKALSEF---KSGEIDV-LVATDIAARGIDINELPIVINIDLPNTPADYVHRIGR 333
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G+A+ FV
Sbjct: 334 TGR-AGASGQAWSFV 347
>gi|223998424|ref|XP_002288885.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220975993|gb|EED94321.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 518
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 128/400 (32%), Positives = 202/400 (50%), Gaps = 36/400 (9%)
Query: 253 KQRHKYSADG-DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILA 311
K++ K S D D +F L SD +L F R +QIQAM+ P ++ GK I A
Sbjct: 4 KKKRKSSVDASDEGQDNTFASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGA 63
Query: 312 DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
++GSGKTLA+LLPV++ L + S++ +G+ ++++PT ELA Q+ C+ L
Sbjct: 64 AKTGSGKTLAFLLPVVELLHNAKFG--SRNGTGA---IVISPTRELAMQIYGVCKDLCTS 118
Query: 372 GVPFRSM-VVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEV 429
G ++ ++ GG ++T+ E L +GV+++IATPGR + L NL ++DE
Sbjct: 119 GKHHQTYGLIIGGANRRTEAERLAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEA 178
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCK---VVMGPGMH 486
D + ++ FE L+S+I + P Q + +AT ++ + L D K V P
Sbjct: 179 DRIL-EQGFEDDLRSIIKALPKQRQTMLFSATQTKKVED-LARTAIDPKSAVYVEVPNET 236
Query: 487 RIS--PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
++ GLE+ V DQ FL L ++K+ K +VF + + +
Sbjct: 237 NLATAAGLEQGYVTVPSDQR--------FL----LLFTFLKKNKNKKIMVFFSSCNSVKF 284
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
+L D + V+ H Q+ R +F K+ L+CTD A+RG+D
Sbjct: 285 HSELLNYID-----IPVMDIHGRQKQQKRTTTFFQF----CKQTTGTLLCTDVAARGLDI 335
Query: 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644
VD ++ FD P DP EY+ RVGRTARG G G+A +F+
Sbjct: 336 PAVDWIIQFDPPDDPKEYIHRVGRTARGEKGKGRALLFLT 375
>gi|421598599|ref|ZP_16041987.1| dead-box ATP-dependent RNA helicase, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404269295|gb|EJZ33587.1| dead-box ATP-dependent RNA helicase, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 359
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 198/379 (52%), Gaps = 28/379 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L+ +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLAEPIARALREENYVTPTPIQAQTVPLALTGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P+ Q LF +AT+P +I + D P ++P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRD------PARVAVTP------VSSTAERINQRI 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ F K S L +L+++ PV++ +VF T + ++K ++ + H
Sbjct: 225 IQVDFSAKPSFLARLLKEEPVNRALVFTR---TKHGADKVVKTLEKAGIPASAI--HGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F RS E R LV TD A+RGID G+ HV+ FD P P YV R+GR
Sbjct: 280 SQNHRERTLGLF---RSGEIRT-LVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQ 647
TAR AG G A V G +
Sbjct: 336 TAR-AGADGTAISLVAGGE 353
>gi|315055381|ref|XP_003177065.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
gi|311338911|gb|EFQ98113.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
Length = 528
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 197/402 (49%), Gaps = 43/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SLK RP+ IQ P +++G+ CI ++GSGKT+A+ P++
Sbjct: 100 SFASLGLAPWLVSSLKAMEIKRPTAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G+ VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 160 KWSADPF-GIY--------AVILTPTRELALQIFEQVKAIS-APQSLKPLLITGGSDMRP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR IK + I+ L +R +LDE D L D
Sbjct: 210 QAIGLSQRPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDV 269
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L +S+ Q L TAT+ E+ + ++ P K P + E +
Sbjct: 270 ETCLSALPAST--DRQTLLFTATVTPEV--RALKSMPRAK--NRPPIFVTEISTENTTIP 323
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ Q + P LN + A L ++ E + TI+FCN+ T +E IL+R
Sbjct: 324 PTLKQTYLQVP----LNHREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERILRRLSH- 378
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
RV H+ L Q R+AN+ F R+ ARL LV TD A+RG+D V V+ +D
Sbjct: 379 ----RVTSLHSLLPQSERIANLSRF---RASAARL-LVATDVAARGLDIPSVGLVINYDV 430
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +Y+ RVGRTAR AG G+A V + V L I R
Sbjct: 431 PRNPDDYIHRVGRTAR-AGREGEAITLVGQRDVQLVMAIEAR 471
>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 506
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 197/379 (51%), Gaps = 37/379 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNQQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + L+ + + L ++ +LDE D + D F ++ +I+
Sbjct: 117 TQERALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRML-DMGFIHDVKRIIA 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI +LV+ + P I+P V + +++
Sbjct: 176 KMPSKKQTLFFSATMPAEI-TQLVQTL-----LHNPVKVEITP------VSST----AER 219
Query: 508 TPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
++ +L NK+ L +L++ + +VF T R + + + ++ +
Sbjct: 220 IEQSVYLLETGNKQQQLNELMKDPSIVSALVFTR---TKRGADRVARGLNK--VNITAQA 274
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q +R + F + ++ LV TD A+RGID + HV+ F+ P P YV
Sbjct: 275 IHGDKSQTSRQTALNNFKSGATR----VLVATDIAARGIDIDELSHVINFNLPNIPETYV 330
Query: 624 RRVGRTARGAGGTGKAFIF 642
R+GRT R AG +G A F
Sbjct: 331 HRIGRTGR-AGLSGTAISF 348
>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 583
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 193/381 (50%), Gaps = 30/381 (7%)
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
+DG + +F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT
Sbjct: 30 SDGPETATTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKT 89
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
++ LP+I E+ ++ + PR +ILAPT ELA+QV N K P + +
Sbjct: 90 ASFTLPMI------EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYH-PLKKAL 142
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
+ GG Q+ L GVDVLIATPGR + + + G + L +++ ++DE D + D F
Sbjct: 143 IIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFI 201
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
++ ++ P Q LF +AT+ EI +L + F +M P ++S G
Sbjct: 202 PDVEKIVGLLPKIRQTLFFSATMGPEI-RRLADAF-----LMNPKEVKVSTGASAATTVV 255
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
++ ++K+ L LI V +FCN+ R V+ + + K+
Sbjct: 256 QALAVVEE------IDKRETLRHLIRIEEVKNAFIFCNR---KRDVDVLFRSL--KKHGF 304
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
V+ H + Q R +++F + EARL +VC+D A+RGID + V HV FD P
Sbjct: 305 DVVQLHGDMAQSARGETLEKF---KKGEARL-MVCSDVAARGIDISAVSHVFNFDVPIHA 360
Query: 620 SEYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG G AF
Sbjct: 361 EDYVHRIGRTGR-AGMEGHAF 380
>gi|452966944|gb|EME71951.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 572
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 192/380 (50%), Gaps = 30/380 (7%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
DG + +F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT
Sbjct: 11 DGPETATTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTA 70
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
++ LP+I E+ ++ + PR +ILAPT ELA+QV N K P + ++
Sbjct: 71 SFTLPMI------EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYH-PLKKALI 123
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q+ L GVDVLIATPGR + + + G + L +++ ++DE D + D F
Sbjct: 124 IGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFIP 182
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ ++ P Q LF +AT+ EI +L + F +M P ++S G
Sbjct: 183 DVEKIVGLLPKIRQTLFFSATMGPEI-RRLADAF-----LMNPKEVKVSTGASAATTVVQ 236
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
++ ++K+ L LI V +FCN+ R V+ + + K+
Sbjct: 237 AMAVVEE------IDKRETLRHLIRIEEVKNAFIFCNR---KRDVDVLFRSL--KKHGFD 285
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
V+ H + Q R +++F + EARL +VC+D A+RGID + V HV FD P
Sbjct: 286 VVQLHGDMAQSARGETLEKF---KKGEARL-MVCSDVAARGIDISAVSHVFNFDVPIHAE 341
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG G AF
Sbjct: 342 DYVHRIGRTGR-AGMEGHAF 360
>gi|365122316|ref|ZP_09339220.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642816|gb|EHL82156.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
Length = 421
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 189/373 (50%), Gaps = 28/373 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ ++ +L+ + ++ P+ IQA A P V++GK + Q+G+GKT A+ +P+IQ
Sbjct: 3 FENLKLTEPVLRALQDEGYITPTPIQAKAIPCVLDGKDLLGCAQTGTGKTAAFSIPIIQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + S R +IL PT ELA+Q+ N + S+ + V+ GG QK+Q
Sbjct: 63 LLAEA----GGNGRRSVRALILTPTRELAAQIGDNINAYSR-HTRLKHTVIFGGVSQKSQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L++GVD+L+ATPGR + L+ + I+ L +R +LDE D + D F ++ ++
Sbjct: 118 VEALRKGVDILVATPGRLLDLVSQKIIDLQTIRFFVLDEADRML-DMGFIHDIKKILLLL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI KL +++ P M ++P + D
Sbjct: 177 PRKRQSLFFSATMPAEI-EKLSR-----QILNHPEMIEVTPA------SSTVDVIEQHVY 224
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K LL L++ + +VF KV IL R + V+ H
Sbjct: 225 SVEKADKSKLLLHLLQDKNIESVLVFTRTKHGADKVARILGR-----SGVKAEAIHGNKS 279
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R+ + F R R+ L+ TD A+ GID + HV+ +D P P YV R+GRT
Sbjct: 280 QNARVKALNNF---RDHITRV-LIATDIAAWGIDIDHLSHVINYDLPNIPETYVHRIGRT 335
Query: 630 ARGAGGTGKAFIF 642
R AG +G AF F
Sbjct: 336 GR-AGRSGAAFSF 347
>gi|108761880|ref|YP_632259.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
1622]
Length = 501
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 196/396 (49%), Gaps = 28/396 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L D ++ ++K + + P+ IQ A P + G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K G+P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGDSFGTYGK-GLPLRHAVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L+++G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQTLRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRML-DMGFIHDVRRVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + D P ++P + + S +
Sbjct: 176 LPPKRQTLFFSATLPPDIVDLARSILTD------PIRVEVTP------ASSTAETVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L L+++ + + +VF +V L + V H
Sbjct: 224 YFVEREQKRGLLTHLLKEGNIHRALVFTRTKHGANRVAKQL-----EGAGVSSAAIHGNK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF RS R+ LV TD A+RGID G+ +VV +D P P +YV R+GR
Sbjct: 279 SQNARERALDEF---RSGTLRV-LVATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
T R AG +G A F ++ + + I R+ P+
Sbjct: 335 TGR-AGASGTAVSFCDAEERAYLRDIERTIRRNVPV 369
>gi|327307374|ref|XP_003238378.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
gi|326458634|gb|EGD84087.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
Length = 528
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 197/402 (49%), Gaps = 43/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SLK RP+ IQ P +++G+ CI ++GSGKT+A+ P++
Sbjct: 100 SFSSLGLASWLVSSLKAMEIKRPTAIQKSCIPEIMKGRDCIGGSRTGSGKTVAFAAPILH 159
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 160 KWSEDPFGVYA---------VILTPTRELALQIFEQVKAIS-APQSLKPLLITGGSDMRP 209
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR IK + I+ L +R +LDE D L D
Sbjct: 210 QAIGLSQRPHIVIATPGRLADHIKSSGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDV 269
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L SS Q L TAT+ E+ + ++ P K + + IS E +
Sbjct: 270 ETCLSALPPSS--DRQTLLFTATVTPEV--RALKSMPRAKNKLPIFVSEIS--TENTTIP 323
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ Q + P LN + A L ++ + TI+FCN+ T +E IL+R
Sbjct: 324 PTLKQTYLQVP----LNHREAFLHVLLSTGGNSSKSTIIFCNRTKTADLLERILRRLSH- 378
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
RV H+ L Q R+AN+ F R+ ARL LV TD A+RG+D V V+ +D
Sbjct: 379 ----RVTSLHSLLPQSERVANLSRF---RASAARL-LVATDVAARGLDIPSVGLVINYDV 430
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +Y+ RVGRTAR AG G+A V + V L I R
Sbjct: 431 PRNPDDYIHRVGRTAR-AGREGEAITLVGQRDVQLVLAIEAR 471
>gi|451856883|gb|EMD70174.1| MAPK protein MPS1 [Cochliobolus sativus ND90Pr]
Length = 1051
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 200/402 (49%), Gaps = 49/402 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL S+ + ++K F + ++IQ PP++ G+ + A ++GSGKTLA+L+P I+
Sbjct: 574 FEELNLSERTMSAIKEMGFEKMTEIQQKTIPPLLSGRDVLGAAKTGSGKTLAFLIPAIEM 633
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQKT 388
L Q L+ ++ +G V++++PT ELA Q+ R L S F ++ GG +
Sbjct: 634 LSQ--LRFKPRNGTG---VIVVSPTRELALQIFGVARELMSNHSQTFG--ILIGGANRSA 686
Query: 389 QLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+ E L++G++++IATPGR + L NLR I+DE D + + FE ++S+I
Sbjct: 687 EAEKLRKGLNLIIATPGRLLDHLHNTQGFVFKNLRSLIIDEADRIL-EVGFEDEMRSIIK 745
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----------MHRISPGLEEFLV 497
P Q + +AT ++ + ++ + PG H GLE+ V
Sbjct: 746 ILPTERQTMLFSATQTTKVEDL-------ARISLKPGPLYINVDYRAEHSTVQGLEQGYV 798
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C D + L ++K K IVF + + +L D
Sbjct: 799 LCDSD------------TRFRLLFSFLKKHQKKKVIVFLSSCASVDFYSELLNYID---- 842
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+ VL H L Q+ R EF ++S L+CTD A+RG+D VD V+ FD P
Sbjct: 843 -LPVLGLHGKLKQQARTNRFFEFVNAQSGT----LICTDVAARGLDIPEVDWVIQFDPPD 897
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659
DP +Y+ RVGRTARGA G G++ +F++ +V ++++ NR
Sbjct: 898 DPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFL-KLLKENR 938
>gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB18]
gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
Length = 481
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 204/399 (51%), Gaps = 30/399 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +LK +N+L P+ IQA P + G+ + Q+G+GKT ++ LP+I
Sbjct: 9 SFQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + V S + GG
Sbjct: 69 RLLENRIKPQPKTC----RVLVLSPTRELSGQILESFNAYGRH-VRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G+DVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSIMPGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLADQMLRDPARVAVTP-------------VASTVERITQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L Q++++ V++ ++F T + ++K R + H
Sbjct: 230 IIQVDHSAKPTLLAQILKQENVNRALIFTR---TKHGADKVVKGLARAGITADAI--HGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID G+ HVV FD P P YV R+G
Sbjct: 285 KSQNHRERVLAAF---RAGEIRT-LVATDIAARGIDVDGITHVVNFDLPNIPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
RTAR AG G A V G++++ + I + R P D
Sbjct: 341 RTAR-AGAEGIAISLVAGEEMAFLRDIEKLIRITLPRED 378
>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
DSM 5305]
Length = 399
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 196/384 (51%), Gaps = 35/384 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ +F +LG S +E LK + PS IQ PP ++G C+ Q+G+GKT A+++P
Sbjct: 15 TKVTFADLGLSPETVEHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMP 74
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V++ L++++ + P+ ++L PT EL+ QV + +S+ VV GG
Sbjct: 75 VLELLKEQQEE---------PQALVLCPTRELSEQVAVEAQKISRFS-KLEIAVVVGGRP 124
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
K Q++ ++ GVDV++ TPGR + L K L L N+R A+LDE D + D F ++ +
Sbjct: 125 LKAQMQKIERGVDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRML-DIGFRPDMEFI 183
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG-LEEFLVDCSGDQE 504
+ P Q L ++ATLP E+ +L F V + ++ +E+F C+ D+
Sbjct: 184 LKQCPKERQTLLLSATLPSEV-ERLANRFMKDPVRIDIEPQNVTADRVEQFY--CTVDEH 240
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K L++L+ + + IVFC T RK + + +F + V L
Sbjct: 241 ----------RKLQLLIKLLVQEKPKQAIVFCR---TKRKADQLYNKFQTRLDGVETL-- 285
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H L Q R MK+F R+ + R+ L+ TD RGID G+ H++ +D P +YV
Sbjct: 286 HGDLPQSKRDRVMKQF---RAGKVRM-LIATDIVGRGIDVGGISHIINYDIPEHSDDYVH 341
Query: 625 RVGRTAR-GAGGTGKAFIFVVGKQ 647
R+GR R + +G+AF FV Q
Sbjct: 342 RIGRAGRLSSEFSGRAFTFVTQGQ 365
>gi|296824810|ref|XP_002850715.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
gi|238838269|gb|EEQ27931.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
Length = 527
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 197/402 (49%), Gaps = 43/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SLK RP+ IQ P +++G+ CI ++GSGKT+A+ P++
Sbjct: 99 SFASLGLAPWLVSSLKAMEIKRPTAIQKCCIPEIIKGRDCIGGSRTGSGKTVAFAAPILH 158
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + V+L PT ELA Q+ +++S + +++TGG +
Sbjct: 159 KWSEDPFGIFA---------VVLTPTRELALQIFEQIKAIS-APQSLKPLLITGGSDMRP 208
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR IK + I+ L +R +LDE D L + D
Sbjct: 209 QAIGLSQRPHIVIATPGRLADHIKSSGEDTIVGLKRVRMVVLDEADRLLSSGPGSMLPDV 268
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L S+ Q L TAT+ E+ + ++ P K P + E +
Sbjct: 269 ETCLSALPPST--NRQTLLFTATVTPEV--RALKSMPRAK--NRPPIFVTEISTENTTIP 322
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ Q + P LN + A L ++ E + TI+FCN+ T +E +L+R
Sbjct: 323 PTLKQSYLQVP----LNHREAFLHVLLSTEGNSSKSTIIFCNRTKTADLLERMLRRLSH- 377
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
RV H+ L Q R+AN+ F R+ ARL LV TD A+RG+D V V+ FD
Sbjct: 378 ----RVTSLHSLLPQSERVANLSRF---RASAARL-LVATDVAARGLDIPSVGLVINFDV 429
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +Y+ RVGRTAR AG G+A V + V L I R
Sbjct: 430 PRNPDDYIHRVGRTAR-AGREGEAITLVGQRDVQLVLAIEAR 470
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 203/405 (50%), Gaps = 38/405 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G S ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------TANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML-DMGFLPDLQ 189
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + +
Sbjct: 190 RILNLLPKECQTLLFSATFSAEIKKLASTYLRNPQTIEVARSNSTNANVRQIVYEV---H 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
ESDK+ A+ QLI + + + IVFCN + ++ +L+R T +
Sbjct: 247 ESDKS---------GAVAQLIRERKLKQVIVFCNSKIGASRLARVLERDGIVATAI---- 293
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 294 -HGDRTQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 348
Query: 624 RRVGRTARGAGGTGKAFIFVVG---KQVSLAQRIMERNRKGHPLH 665
R+GRT R AG +G A KQ++ +++++R + PL
Sbjct: 349 HRIGRTGR-AGASGDALSLCSANERKQLADIEKLIKRPLEVDPLE 392
>gi|118572555|sp|Q0UR48.1|HAS1_PHANO RecName: Full=ATP-dependent RNA helicase HAS1
Length = 610
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 195/397 (49%), Gaps = 44/397 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S+ +E++K F ++IQ A PP++ GK + A ++GSGKTLA+L+P I+
Sbjct: 133 FDELNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEM 192
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQKT 388
L + ++ +G V++++PT ELA Q+ R L K F +V GG ++
Sbjct: 193 LSSMRFK--PRNGTG---VIVVSPTRELALQIFGVARELMEKHSQTFG--IVIGGANRRA 245
Query: 389 QLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+ E L +GV++LIATPGR + L NL+ I+DE D + + FE ++S+I
Sbjct: 246 EAEKLAKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRIL-EVGFEDEMRSIIK 304
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP--------GMHRISPGLEEFLVDC 499
P Q + +AT + VE + GP H GLE+ V C
Sbjct: 305 ILPTDRQTMLFSATQTTK-----VEDLARISLKAGPLYINVDYRKEHSTVEGLEQGYVIC 359
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
D T F L ++K K IVF + + + +L D +
Sbjct: 360 DSD--------TRF----RLLFSFLKKHQKKKVIVFFSSCNSVKFYAELLNYID-----L 402
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
VL H L Q+ R EF ++S L+CTD A+RG+D VD V+ FD P DP
Sbjct: 403 PVLELHGKLKQQARTNRFFEFCNAQSGT----LICTDVAARGLDIPEVDWVIQFDPPDDP 458
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+Y+ RVGRTARG+ G G++ +F++ ++ + + E
Sbjct: 459 RDYIHRVGRTARGSEGKGRSLMFLLPSEIGFLKLLKE 495
>gi|365875010|ref|ZP_09414540.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis Ag1]
gi|442589346|ref|ZP_21008154.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis R26]
gi|365757122|gb|EHM99031.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis Ag1]
gi|442560956|gb|ELR78183.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis R26]
Length = 424
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 193/378 (51%), Gaps = 29/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L + + ++L+ + + P+ IQ A P ++ GK + Q+G+GKT A+ +P++Q
Sbjct: 2 NFNDLKLIEPISKALQEEGYKTPTSIQEQAIPKILAGKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + +K G + +IL PT ELA Q+ N + + +P ++MV+ GG +Q
Sbjct: 62 LLTE---RSENKHRKGVVKALILTPTRELAIQIEENFEAYGRH-LPLKTMVIFGGVKQGA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L+ GVD+L+ATPGR + I +GI+ L NL +LDE D + D F ++ ++
Sbjct: 118 QEEKLKRGVDILVATPGRLLDFIGQGIITLKNLDIFVLDEADRML-DMGFVHDVKRILKY 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF++AT+P EI E+ + KV + P +S E ++ DK
Sbjct: 177 LPEKRQNLFLSATMPKEIQKLASEILVNPVKVEVAP----VSSTAETIDQSVFFVEKEDK 232
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ L+ L++ +S IVF T + I K+ + ++++ H
Sbjct: 233 I---------NLLIHLLQDQSLSPVIVFSR---TKHGADKIAKKLN--QSKISAEAIHGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F + +++ LV TD A+RGID + +VV F+ YV R+G
Sbjct: 279 KSQNARQNALNNFKSGKTR----ILVATDIAARGIDIDNLKYVVNFELSDVAETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVG 645
RT R AG +G +F FV G
Sbjct: 335 RTGR-AGASGTSFSFVDG 351
>gi|357031714|ref|ZP_09093657.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414944|gb|EHH68588.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 573
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 194/402 (48%), Gaps = 36/402 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S +++++K + P+ IQA A P +++G + Q+G+GKT ++ LP++++
Sbjct: 64 FSELGLSAPIMQAIKELGYEHPTPIQAQAIPEILKGHDVLGVAQTGTGKTASFTLPMLEK 123
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 124 LSG------SRARARMPRSLILEPTRELALQVAENFKLYGKH-LRLTHALLIGGESMTDQ 176
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L G DVLIATPGR + L G L L ++DE D + D F ++ ++S
Sbjct: 177 REVLNRGADVLIATPGRLLDLFGRGGLLLTQTSLLVIDEADRML-DMGFIPDIEKIVSLL 235
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ +EE +V D+
Sbjct: 236 PPYRQTLFFSATMAPEI-RRLADAFLKHPVEITVSRPS--SVATTIEERVVIVPADE--- 289
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K+ AL +L+ V IVFCN+ ++ ++L+R+ K + H
Sbjct: 290 ---------KRRALKKLLRHEDVQNAIVFCNR----KRDVDMLQRYLSKHS-FSAGHLHG 335
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R + + F K LVC+D A+RGID G+ HV FD P + +YV R+
Sbjct: 336 DLAQSLRFSTLDSFKNGDLK----ILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRI 391
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
GRT R AG G AF + L + I K DVP
Sbjct: 392 GRTGR-AGKEGHAFSIAGPRDQKLLEAIEALTGKAIVRQDVP 432
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/393 (30%), Positives = 193/393 (49%), Gaps = 26/393 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ + P+ IQA A P V+ G+ + A Q+G+GKT A+ LP+I
Sbjct: 3 TFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPIIA 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLR +S + R +IL PT ELA Q+ ++ +S +K +P R V GG
Sbjct: 63 RLRHYATHSVSPAMHPV-RCLILTPTRELADQIAASVQSYTKY-LPLRHTCVFGGVNMDP 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L G+D+++ATPGR + +++ +QL + +LDE D + D F + ++ +++
Sbjct: 121 QKADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRML-DMGFILDIRRILAQ 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT EI E D + + + +E+ + Q
Sbjct: 180 LPKTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQ----- 234
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L +LI + +S+ IVFC ++ L+ FDR + H
Sbjct: 235 -------KRRLLARLINERAMSQVIVFCRTKQGADRLARELRNFDRLDAEA----IHGDK 283
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ RL + F K+ +L LV TD A+RG+D + + VV FD P P +YV R+G
Sbjct: 284 AQQARLDTLAAF-----KDGKLRILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIG 338
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK 660
RT R AG +G A + ++ L + I + R+
Sbjct: 339 RTGR-AGQSGVAISLMDAEEQKLLEAIEKLTRQ 370
>gi|302847799|ref|XP_002955433.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
gi|300259275|gb|EFJ43504.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
Length = 554
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPV 326
+SF++LG ++ +L P+ IQ+++ P ++ + + LA +GSGKTLAYLLP+
Sbjct: 74 RSFEQLGLQTPLVSALYGMGITEPTDIQSISIPALMNQPGNYFLASHTGSGKTLAYLLPL 133
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+Q L+QEE G PRV++L PT EL Q+ + L V FR+
Sbjct: 134 VQALKQEEASGFVPRPK-RPRVLVLGPTRELTDQITGVAKKLCHT-VKFRATCANADTSI 191
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE--VALQS 444
Q + +DVL+ATP RF+ IKEG + ++R ++DE D +F E A+ +
Sbjct: 192 SQQARAMSGPIDVLVATPTRFLHHIKEGNVAYRDIRWLVVDEADTVFGQGWGEEVAAILA 251
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR-ISPGLEEFLVDCSGDQ 503
+ S P A L + E+ PD K + +HR +S +F+ G
Sbjct: 252 PLRSKPDPAHVLL----------RAIRELVPDAKELKTSTLHRAVSGSSHQFMTLPPGGN 301
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ E + + A K +VFCN + +CR VE+ F R+E + +
Sbjct: 302 KLQLLAEILGADNRRA----------QKVLVFCNTVDSCRAVEH----FAREEG-LPCVC 346
Query: 564 FHAALDQETRLANMKEF-TTSRSKEARL-FLVCTDRASRGIDFAG-VDHVVLFDFPRDPS 620
+H + E R +M F ARL ++ TD A+RG+DF G VDHVV FDFP
Sbjct: 347 YHGEMPSEERQESMATFAAAVAGGGARLPIMIATDLAARGLDFPGTVDHVVNFDFPTTSV 406
Query: 621 EYVRRVGRTARGAGGTG 637
+Y+ R GRTAR AG TG
Sbjct: 407 DYLHRTGRTAR-AGNTG 422
>gi|341614600|ref|ZP_08701469.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 459
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 182/381 (47%), Gaps = 42/381 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++++++ + P+ IQ A PP++ K I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSDKLLQAVEAAGYSEPTPIQEQAIPPILMMKDIIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +ILAPT ELA+QV N K + ++ GG + Q
Sbjct: 63 LASGRRRAL------MPRSLILAPTRELAAQVAENFEKYGKQH-DLQLALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 116 IKALNEGVDVLIATPGRLMDLFERGKILLNGCEMLVIDEADRML-DMGFIPDIETICSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P I KL F D +P E S ++
Sbjct: 175 PEPRQTLLFSATMPPPI-EKLAGKFLD------------NPKRIEVSRAASTNENI---- 217
Query: 510 ETAF------LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
TAF K+ L L+ V IVF N+ T R++ L+ +
Sbjct: 218 -TAFKIPVKPREKRETLRWLLRNDLVETAIVFSNRKTTVREINKSLQSHGFASGEI---- 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +DQ +R+ + F LV +D A+RG+D GV HV FD P P +YV
Sbjct: 273 -HGDMDQSSRIKELDRFKAGEIN----ILVASDVAARGLDIKGVSHVFNFDTPWHPDDYV 327
Query: 624 RRVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G+AF FV
Sbjct: 328 HRIGRTGR-AGAKGRAFTFVT 347
>gi|383450999|ref|YP_005357720.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium
indicum GPTSA100-9]
gi|380502621|emb|CCG53663.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium indicum GPTSA100-9]
Length = 431
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 199/392 (50%), Gaps = 27/392 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + E LK +N++ P+ IQ A P ++E + Q+G+GKT A+ +P++
Sbjct: 2 TFEDLKLHRNITEVLKEENYVAPTPIQQQAIPIILEEHDLVGCAQTGTGKTAAFAIPILN 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G SK+ R ++LAPT ELA Q+L + + + + ++MV+ GG Q
Sbjct: 62 YL--HPIVG-SKNKRKVIRTLVLAPTRELAHQILDSFDTYGRY-MNTKAMVIYGGVNQVP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++EGVD+LIATPGR + L K+G + L +L ++DE D + D F ++ +I
Sbjct: 118 QVNKIKEGVDILIATPGRLLDLHKQGFIDLNHLHHLVIDEADQML-DMGFINDVKKIIKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q L +AT+P I +L + F + P ++P V + ++ + K
Sbjct: 177 TPDNRQTLLFSATMPAAI-RELADQF-----LKKPKFVSVTP------VSSTAEKVNQKV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K+ L+ L+++ +S +VF T +N++K + E + H
Sbjct: 225 YMVQKEDKRKLLIHLLQEEKISNVLVFVR---TKHSADNVVKALKKNEITAEAI--HGDK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q RL + EF + LV TD A+RGID + +V+ FD P P YV R+GR
Sbjct: 280 SQTARLRVLDEFKNKKIS----VLVATDIAARGIDIDLLPYVINFDIPNVPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRK 660
T R AG G A F +V+ + I + R+
Sbjct: 336 TGR-AGNEGLAISFCGKDEVTYWKDIEKLTRQ 366
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/422 (31%), Positives = 208/422 (49%), Gaps = 50/422 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +++++ + PS IQA A P V+ GK + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVVTGG 383
R L+ S P R +IL PT ELA+QV +S+S G+ P +S VV GG
Sbjct: 62 R--------LNASAPIKPHRIRALILTPTRELAAQV---AQSVSTYGLHTPLKSAVVFGG 110
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ +Q+ L+ GVD+LIATPGR + L +G + L +LDE D + D F ++
Sbjct: 111 VKINSQIAQLRRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRML-DMGFIHDIR 169
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P Q L +AT EI + D V + + +E+++
Sbjct: 170 RILKLLPAERQNLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPV---- 225
Query: 504 ESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
DK +K ALL +L+E+ ++ +VF T + ++ D+ +
Sbjct: 226 --DK-------KRKGALLRELVEEKCWTQVLVFSR---TKHGANRLAQQLDK--AGIEAT 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R +++F + R + LV TD A+RG+D A + VV FD P +Y
Sbjct: 272 AIHGNKSQGARTRALEDFKSGRLR----VLVATDIAARGLDIAQLPQVVNFDLPNVAQDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMERNRKG--HPLHDVPSAFEL 673
V R+GRT R AG +GKA+ V ++ L QR + R P H+VP++ L
Sbjct: 328 VHRIGRTGR-AGASGKAYSLVCADEIKQLNDIEQLIQRHLPREYIDGFEPEHEVPASAPL 386
Query: 674 MR 675
+
Sbjct: 387 RK 388
>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces marneffei
ATCC 18224]
gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces marneffei
ATCC 18224]
Length = 538
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/403 (32%), Positives = 200/403 (49%), Gaps = 44/403 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L + ++++SL RP+ IQ P +++GK CI ++GSGKT+A+ +P++Q
Sbjct: 109 TFATLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILKGKDCIGGSRTGSGKTIAFAVPILQ 168
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + V+L PT ELA Q+ +++S + +++TGG +
Sbjct: 169 KWAEDPFGVFA---------VVLTPTRELALQIFEQFKAIS-APQSLKPVLITGGTDMRP 218
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + V+IATPGR I+ + I+ L +R ++DE D L D
Sbjct: 219 QAIALSQRPHVIIATPGRLADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDV 278
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL-V 497
E L +L SS Q L TAT+ E+ + ++ P + P +H G E +
Sbjct: 279 ETCLSALPPSS--ERQTLLFTATVTPEV--RALKSMP--RPANRPPIHVTEIGTENHAPI 332
Query: 498 DCSGDQESDKTPET---AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+ Q + P T AFL+ +L E++ I+FCN+ T +E IL+R
Sbjct: 333 PPTLKQTYLQVPMTHREAFLH----VLLSTERNSTKPAIIFCNRTRTADLLERILRRLSH 388
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
RV H+ L Q R AN+ F R+ ARL LV TD ASRG+D V V+ FD
Sbjct: 389 -----RVTSLHSLLPQSERTANLSRF---RASAARL-LVATDVASRGLDIPNVSLVINFD 439
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +YV RVGRTAR AG TG++ V + V L I +R
Sbjct: 440 VPRNPDDYVHRVGRTAR-AGRTGESVTLVGQRDVQLVLAIEKR 481
>gi|386815861|ref|ZP_10103079.1| ATP-dependent RNA helicase CsdA [Thiothrix nivea DSM 5205]
gi|386420437|gb|EIJ34272.1| ATP-dependent RNA helicase CsdA [Thiothrix nivea DSM 5205]
Length = 638
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 201/410 (49%), Gaps = 50/410 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++++++ + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 AFSELGLAAPVLQAVQELGYETPSAIQAETIPYLLEGRDVLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ST+G P+++ILAPT ELA QV C+ + F M + GG +T
Sbjct: 70 RL--------DLSTTG-PQILILAPTRELAIQVAEACQKYAAHLPGFHVMPIYGGQDYRT 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GV V++ TPGR M ++ L+L NL+ +LDE D + F ++ ++
Sbjct: 121 QFRQLERGVHVVVGTPGRVMDHLRRETLKLDNLQALVLDEADEMLR-MGFIEDIEWIMEQ 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS------PGLEEFLVD-CSG 501
+PVT Q +AT+P P +HRI+ P + V +
Sbjct: 180 TPVTRQIALFSATMP-------------------PAIHRIAQSYLNNPAEVKIQVKTTTA 220
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVR 560
D + + L+K AL +++E P I+F K T E + R
Sbjct: 221 DTIRQRYWLVSGLHKLDALTRILEAEPFDACIIFVRTKTETVELAEKLQARG------YG 274
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+ + + Q N++E T + K+ ++ L+ TD A+RG+D + HV+ +D P D
Sbjct: 275 AVALNGDIPQ-----NVRERTVDQLKKGKIDILIATDVAARGLDVERITHVINYDIPTDT 329
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
YV R+GRT R AG +G A +FV ++ L + I RK L ++PS
Sbjct: 330 ESYVHRIGRTGR-AGRSGDAILFVSPRERYLLRAIERATRKPIELMELPS 378
>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
Length = 432
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 190/387 (49%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I++L++Q P+ IQ A P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + + + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELVKQISDEAKEIGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LIS
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIS 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE+ IVFCNK ++ ++ + + H
Sbjct: 231 ------------LIKMIEEDNPFLAIVFCNKREGAVRLS-----YELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D PRD Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + S +RI
Sbjct: 330 RTGR-AGNSGVAVTFATPQDESWLRRI 355
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 209/411 (50%), Gaps = 42/411 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K+ SG R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLAKGH-----KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L+++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI +L + V ++ + P + + +++++ D
Sbjct: 175 LPAKRQNLMFSATFSDEIR-ELAKGLVNHPVEISVTP-RNAAATTVKQWICPV------D 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT ++A L+QLI++ + +VF T + K + E + H
Sbjct: 227 KTQKSAL------LIQLIKQENWQQVLVFSR---TKHGANRLAKSLIQAE--ISAAAIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + +F +S E R+ LV TD A+RG+D + VV FD P P +YV R+
Sbjct: 276 NKSQGARTKALADF---KSGEVRV-LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQ-------RIMERNR-KG-HPLHDVP 668
GRT R AG TG+A V +++ L + R++ER +G P+H +P
Sbjct: 332 GRTGR-AGATGQAVSLVSSEEIKLLKDIERLINRVLERQEVEGFSPVHALP 381
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 204/391 (52%), Gaps = 37/391 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFQDLNISPIILKALAKENYKTPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNEQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + LI + + L ++ +LDE D + D F ++ +I+
Sbjct: 117 TQERALQQGADILIATPGRLIDLINQKHVDLQHVEILVLDEADRML-DMGFIHDVKRIIA 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI +LV+ + P I+P +++
Sbjct: 176 KMPSKKQTLFFSATMPSEI-TQLVKTL-----LHNPVKVEITP----------VSSTAER 219
Query: 508 TPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
++ +L +K+ L +L++ ++ +VF T R + + + ++ +
Sbjct: 220 IVQSVYLLETGSKQKQLNELLKDPSIASALVFTR---TKRGADRVARGLNK--VNITAQA 274
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q +R + F +S E R+ LV TD A+RGID + HV+ F+ P P YV
Sbjct: 275 IHGDKSQTSRQNALNNF---KSGETRV-LVATDIAARGIDIDELSHVINFNLPNIPETYV 330
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
R+GRT R AG +G A F +V L + I
Sbjct: 331 HRIGRTGR-AGLSGTAISFCEVDEVPLLRDI 360
>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
Length = 538
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 198/402 (49%), Gaps = 58/402 (14%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG + + LK Q P+ +Q + P +++GK I ++G+GKTLA++LP++Q
Sbjct: 13 NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQ 386
+ P+ +I+APT ELA Q+ + L+ G P + + V GG
Sbjct: 73 HI---------DPKRAYPQALIIAPTRELALQITEEAKKLT-AGEPDGIKILAVYGGQDV 122
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL L+ G ++I TPGR + ++ G L+L ++ +LDE D + + F +++LI
Sbjct: 123 EKQLRKLEGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLH-MGFLDEVEALI 181
Query: 447 SSSPVTAQYLFVTATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISP----GLEEF 495
+ P Q + +AT+P + N+ V++ V+ G SP +++
Sbjct: 182 HALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDI-----VIKGA-----SPIPLEQIQQV 231
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+V+C +D++ K+ AL +IE+ I+FC + L +
Sbjct: 232 VVEC-----TDRS-------KQDALRAMIEEHNPFLAIIFCRTKRRATTLNEALLAHGYQ 279
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
H L Q R A MK F +EA+L LV TD A+RG+D GV HV +D
Sbjct: 280 SDE-----LHGDLSQAKREAVMKRF-----REAKLQLLVATDVAARGLDVEGVTHVFNYD 329
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
P D Y+ R+GRT R AGG+G A F GK ++ QRI E
Sbjct: 330 MPHDVESYIHRIGRTGR-AGGSGMAITFAAGKDLNDLQRIEE 370
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 191/377 (50%), Gaps = 25/377 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMITS 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K V ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYAKY-VKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + S +
Sbjct: 117 EQLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + + + S +E+ V G ++ +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGS 235
Query: 510 ETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K++ L QLI++ + IVFCN+ V V LK++ P H
Sbjct: 236 E-----KRTVLRQLIDREGEKCTNAIVFCNRKVDVDIVAKSLKKYG-----YNAEPIHGD 285
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R ++ F R RL L+ +D A+RG+D V HV FD P +YV R+G
Sbjct: 286 LDQSQRTRTLEGF---REGSIRL-LIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIG 341
Query: 628 RTARGAGGTGKAFIFVV 644
RT R AG GKAF VV
Sbjct: 342 RTGR-AGREGKAFTIVV 357
>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 538
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 198/402 (49%), Gaps = 58/402 (14%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG + + LK Q P+ +Q + P +++GK I ++G+GKTLA++LP++Q
Sbjct: 13 NFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQ 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQ 386
+ P+ +I+APT ELA Q+ + L+ G P + + V GG
Sbjct: 73 HI---------DPKRAYPQALIVAPTRELALQITEEAKKLT-AGEPDGIKILAVYGGQDV 122
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL L+ G ++I TPGR + ++ G L+L ++ +LDE D + + F +++LI
Sbjct: 123 EKQLRKLEGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLH-MGFLDEVEALI 181
Query: 447 SSSPVTAQYLFVTATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISP----GLEEF 495
+ P Q + +AT+P + N+ V++ V+ G SP +++
Sbjct: 182 HALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDI-----VIKGA-----SPIPLEQIQQV 231
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+V+C +D++ K+ AL +IE+ I+FC + L +
Sbjct: 232 VVEC-----TDRS-------KQDALRAMIEEHNPFLAIIFCRTKRRATTLNEALLAHGYQ 279
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
H L Q R A MK F +EA+L LV TD A+RG+D GV HV +D
Sbjct: 280 SDE-----LHGDLSQAKREAVMKRF-----REAKLQLLVATDVAARGLDVEGVTHVFNYD 329
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
P D Y+ R+GRT R AGG+G A F GK ++ QRI E
Sbjct: 330 MPHDVESYIHRIGRTGR-AGGSGMAITFAAGKDLNDLQRIEE 370
>gi|407770302|ref|ZP_11117672.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
gi|407286580|gb|EKF12066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
Length = 609
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 208/403 (51%), Gaps = 40/403 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +LK + + P+ IQA A P ++EGK + Q+G+GKT A+ LP++ R
Sbjct: 4 FSDLGLAEPVLRALKHEGYDAPTPIQAQAIPSLLEGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E + +KS RV++LAPT ELA+Q+ + R+ + + VV GG Q
Sbjct: 64 LSKNETRTPAKSC----RVLVLAPTRELAAQIGDSFRAYGRF-MNTTVAVVVGGVAHGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + I G L+L N+ +LDE D + D F ++ +I
Sbjct: 119 IKAITPGVDVLVATPGRLLDHIDAGKLKLNNVDVVVLDEADHML-DLGFLPPIKRIIKML 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P + Q LF +AT+P +I ++ D KV + P + QE +
Sbjct: 178 PRSRQNLFFSATMPSQIGQLAGDMLSDPVKVSVTP---------------VATTQE--RV 220
Query: 509 PETAFL---NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
++ ++ N+K LL +L++ +T+VF T R + + + + ++
Sbjct: 221 EQSVYMIEKNRKRQLLAELLDNPLFKRTLVFTR---TKRGADRVARHLE--SCKISAAAI 275
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F K+ ++ LV TD A+RGID GV HVV F+ P P YV
Sbjct: 276 HGNKSQNQRERALNAF-----KDGQIGVLVATDIAARGIDVDGVTHVVNFELPNVPESYV 330
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
R+GRTARG G +G A F ++ L + I + R+ P+ D
Sbjct: 331 HRIGRTARG-GASGSAIAFCDEEERGLLRDIEKTTRQSIPVID 372
>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
Length = 437
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 192/376 (51%), Gaps = 35/376 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + + ++++ N+ + IQ A P ++EG+ + ++G+GKT A+ LP++Q+
Sbjct: 3 FKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPILQK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ S+ + + +ILAPT ELA Q+ +S++ V +S V+ GG RQ +Q
Sbjct: 63 LY---LRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSF-VNLKSTVIFGGVRQGSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ G+DVLIATPGR L K+G+L L ++ +LDE D + D F ++ ++
Sbjct: 119 VTKIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFVLDEADRML-DMGFINDIRRIMKYI 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPG---MHRISPGLEEFLVDCSGDQES 505
P Q + +ATLP EI + + E+ + KV++ G + RI L + VD +
Sbjct: 178 PKQRQTMLFSATLPKEIQHLIDEILNNPEKVMVSSGQMTVERIQQSL--YYVDKA----- 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK L++L+E + IVF T R + K+ R + H
Sbjct: 231 ---------NKAKLLIKLLENPQIYNAIVFVR---TKRNANTLCKKLQRAGIEAEAI--H 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R+ + F + + LV TD A+RGID + HVV FD P YV R
Sbjct: 277 GDKSQNARVRALNRFKEDKVR----VLVATDIAARGIDVDHLTHVVNFDLPEQAENYVHR 332
Query: 626 VGRTAR-GAGGTGKAF 640
+GRTAR GA GT F
Sbjct: 333 IGRTARAGADGTAITF 348
>gi|396496328|ref|XP_003844718.1| hypothetical protein LEMA_P000260.1 [Leptosphaeria maculans JN3]
gi|312221299|emb|CBY01239.1| hypothetical protein LEMA_P000260.1 [Leptosphaeria maculans JN3]
Length = 613
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/399 (31%), Positives = 195/399 (48%), Gaps = 48/399 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL SD +E++K F ++IQ PP++ GK + A ++GSGKTLA+L+P I+
Sbjct: 136 FSELNLSDRTMEAIKNMGFETMTEIQQKTIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEM 195
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQKT 388
L + ++ +G V++++PT ELA Q+ R L K F +V GG ++
Sbjct: 196 LSAMRFK--PRNGTG---VIVVSPTRELALQIFGVARELMEKHSQTFG--IVIGGANRRA 248
Query: 389 QLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+ E L +GV++LIATPGR + L NL+ I+DE D + + FE ++S+I
Sbjct: 249 EAEKLVKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRIL-EVGFEDEMRSVIK 307
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----------MHRISPGLEEFLV 497
P Q + +AT ++ + ++ + PG H GLE+ V
Sbjct: 308 ILPSDRQTMLFSATQTTKVEDL-------ARISLKPGPLYINVDYRKEHSTVEGLEQGYV 360
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C D T F L ++K K IVF + + + +L D
Sbjct: 361 ICDSD--------TRF----RLLFSFLKKHQKKKVIVFFSSCNSVKFYAELLNYID---- 404
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+ VL H L Q+ R EF + S L+CTD A+RG+D VD V+ FD P
Sbjct: 405 -LPVLELHGKLKQQVRTNRFFEFCNATSGT----LICTDVAARGLDIPEVDWVIQFDPPD 459
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
DP +Y+ RVGRTARG+ G G++ +F++ ++ + + E
Sbjct: 460 DPRDYIHRVGRTARGSDGKGRSLMFLLPSEIGFLKLLKE 498
>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 359
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 30/372 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ ++++++ + P+ IQA A PP++ K I Q+G+GKT +++LP+I
Sbjct: 2 SFADLGLSEDLLKAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L PR +ILAPT ELA+QV N K + ++ GG +
Sbjct: 62 VMASGRRRAL------MPRSLILAPTRELAAQVAENFEKYGKNH-DLKLALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++ + S
Sbjct: 115 QIKALNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRML-DMGFIPDIEFICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT+P I KL + F D P +S + D + K
Sbjct: 174 LPEQRQTMLFSATMPPPI-EKLAKKFLD-----NPKRIEVSRA-----ATTNKDITAFKI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
P + K+ L L+ V I+F N+ T R++ L++ + + H +
Sbjct: 223 PVES-RKKRETLRWLLRNDHVETAIIFANRKTTVRELNKSLQQHGFASSEI-----HGDM 276
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ +R+ + F LV +D A+RG+D GV HV FD P P +YV R+GR
Sbjct: 277 DQSSRIKELDRFKNGEVN----ILVASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGR 332
Query: 629 TARGAGGTGKAF 640
T R AG G+AF
Sbjct: 333 TGR-AGAKGRAF 343
>gi|381208749|ref|ZP_09915820.1| ATP-dependent RNA helicase [Lentibacillus sp. Grbi]
Length = 495
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 195/386 (50%), Gaps = 43/386 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++++L++ F + IQA P +EG I Q+G+GKT A+ +P+I+
Sbjct: 3 TFKELNISQAIMKALQKMGFEEATPIQAETIPLAIEGYDAIGQAQTGTGKTAAFGIPMIE 62
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFR 385
++ +Q ++QGL ++APT ELA QV L K GV RSM V GG
Sbjct: 63 KIDPQQRKIQGL-----------VVAPTRELAIQVAEELNRLGKIKGV--RSMSVYGGQH 109
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ L++G +++ATPGR + ++ ++ N+R A+LDE D + N F ++ +
Sbjct: 110 MERQIRALKDGPHIVVATPGRLLDHMRRKTIRTENIRTAVLDEADEMLN-MGFIDDIRDI 168
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ + P Q L +AT+P EI + + K V ++++ ++ Q+
Sbjct: 169 LKNIPEERQTLLFSATMPKEIRDIATNLMKSPKEVKVKAKEMTVENIDQYFIEVPEKQKF 228
Query: 506 DK-TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR-VRVLP 563
D T F K A IVF T ++V+ I D + R R
Sbjct: 229 DTLTNHLDFYAPKLA-------------IVFSR---TKKRVDEIT---DGLQARGFRAEG 269
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R++ + +F +R LV TD A+RG+D +GV HV FD P+DP YV
Sbjct: 270 IHGDLTQGKRMSVLNKFKNNRVD----VLVATDVAARGLDISGVTHVYNFDIPQDPESYV 325
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVS 649
R+GRT R AG TG+A F+ ++++
Sbjct: 326 HRIGRTGR-AGRTGEAVSFITPREIA 350
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 189/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI D + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
E DKT A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 241 ---EGDKT---------GAVVQLIRERSLKQVIVFCNSKIGASRLARSLERDGVVATAI- 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 288 ----HGDRTQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAE 339
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 340 DYVHRIGRTGR-AGASGDAL 358
>gi|346311637|ref|ZP_08853640.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
gi|345900700|gb|EGX70520.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
Length = 679
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 191/400 (47%), Gaps = 35/400 (8%)
Query: 259 SADGDFFSRKS--------FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+AD F S+ + F +LG SD ++ +++ + + +QAMA P V+ G+ +
Sbjct: 15 AADASFSSKSADAADELARFADLGLSDEVLAAVEDLGYEHATPVQAMAIPQVLAGRDILA 74
Query: 311 ADQSGSGKTLAYLLPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
A Q+G+GKT A+LLP + RL R + +G + S PR++I+ PT ELA Q+ C+ ++
Sbjct: 75 AAQTGTGKTAAFLLPTMSRLPRVKRARGRAMSVGCGPRMLIITPTRELAQQIDDVCKKVA 134
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
++ V GG Q L+ G D+L+ATPGR + LI +G L ++ +LDE
Sbjct: 135 -ARTRHTAVTVVGGVSYNPQKSALKRGCDILVATPGRLVDLIDQGACMLDEVQVLVLDEA 193
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRI 488
D + D F A++ ++S +P Q L +ATL + ++ D +V + P
Sbjct: 194 DRML-DMGFLPAVRKIVSYTPADRQTLLFSATLDEAAVGSITDLVSDPARVEIAPATS-T 251
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
+ +E++L+ S K L L+ + IVF T R+ +
Sbjct: 252 AETVEQYLLPVS------------LEAKNGVLADLLLAQGTERVIVFTR---TKRRADTC 296
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
+R R + H Q R +K F + LV TD +RGID V
Sbjct: 297 CRRLARAG--ISCAAIHGDRSQAQRERALKAFRAGKCD----VLVATDVLARGIDVTDVR 350
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648
+VV FD P +P +Y+ R+GRT R AG G A V + +
Sbjct: 351 YVVNFDVPEEPVDYIHRIGRTGR-AGEVGWAVTIVTSQDI 389
>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
Length = 432
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 191/387 (49%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I++L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + + + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQIADEAKEIGAI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F ++SLIS
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIESLIS 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++++
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPEEKTER 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE+ IVFCNK ++ ++ + + H
Sbjct: 231 ------------LIKMIEEDNPFLAIVFCNKREGAVRLS-----YELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D PRD Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + S +RI
Sbjct: 330 RTGR-AGNSGVAVTFATPQDESWLRRI 355
>gi|391328265|ref|XP_003738610.1| PREDICTED: ATP-dependent RNA helicase rhlE-like, partial
[Metaseiulus occidentalis]
Length = 556
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 148/465 (31%), Positives = 216/465 (46%), Gaps = 45/465 (9%)
Query: 203 NDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQ-RHKYSAD 261
+D P +S+ KN+ + + EK G K R+ I + E T + S D
Sbjct: 122 SDAPEDSVTKNVKEAVA-----EKPGPKRRSRARATEKIASESKETTIAQDAIEPEPSTD 176
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
F LG S ++ +++ + P+ IQA A P V++ + + Q+G+GKT +
Sbjct: 177 SPL---PPFDTLGLSAPLLRAIEEIGYRTPTPIQARAIPVVLQKRDVLGVAQTGTGKTAS 233
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+ LP++ EL S++ + PR +IL PT ELA QV N S K + ++
Sbjct: 234 FTLPML------ELLSGSRARARMPRSLILEPTRELALQVSENLTSYGKH-LKLNHALLI 286
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG Q L +GVD+LIATPGR M L + G L L ++DE D + D F
Sbjct: 287 GGESMADQRAVLNQGVDILIATPGRLMDLFERGGLLLTQANILVIDEADRML-DMGFIPD 345
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVD 498
+Q + S P Q LF +AT+ EI + L + F P+ V P ++ +EE L+
Sbjct: 346 IQRITSLLPARRQTLFFSATMAPEIRS-LADQFLSNPEEITVSRPS--SVATTIEEALLI 402
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
+ E DK + L L+ + V IVFCN+ R V+ + K R +
Sbjct: 403 VN---ERDK---------RRTLRTLLNRENVQNAIVFCNR---KRDVDILQKSLHRHQFS 447
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
V L H L Q TR + +F + K LVC+D A+RGID G+ HV FD P +
Sbjct: 448 VGHL--HGDLHQATRFKTLDQFKNNEIK----ILVCSDVAARGIDIGGLSHVFNFDLPFN 501
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663
+YV R+GRT R AG G AF Q L I + K P
Sbjct: 502 AEDYVHRIGRTGR-AGRMGHAFSLATPGQKGLLDAIEQLTGKKLP 545
>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 521
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 188/379 (49%), Gaps = 37/379 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I+R
Sbjct: 4 FSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIER 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++LAPT ELA QV + +K G +++ GG Q
Sbjct: 64 LSK------GRARARMPRALVLAPTRELADQVAMSFEKYAK-GTKLSWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L + G + L + ++DE D + D F ++ + +
Sbjct: 117 VAALNKGVDVLIATPGRLLDLFERGKMMLNGVELMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+P EI +L + F P P M + + ++LV
Sbjct: 176 PPKRQTLFFSATMPPEI-TRLTQAFLKDPTRIEASRPAM--TAETITQYLV--------- 223
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPF 564
+ P + K++AL +L+ ++ V IVFCN+ V LK+ FD P
Sbjct: 224 RIPSSDPKAKRAALRELMARADVRNGIVFCNRKSEVDVVAKSLKQHGFD-------AAPI 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H LDQ R + +F + K LV +D A+RG+D V HV +D +YV
Sbjct: 277 HGDLDQSLRTKTLADFRSGALK----ILVASDVAARGLDIPDVSHVFNYDVSHHADDYVH 332
Query: 625 RVGRTARGAGGTGKAFIFV 643
R+GRT R AG G+AF+ V
Sbjct: 333 RIGRTGR-AGKLGQAFMIV 350
>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 470
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 199/425 (46%), Gaps = 35/425 (8%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
SA F+ SF++LG + LK P+ IQ + P ++ + A Q+G+GK
Sbjct: 25 SAPRRLFAAASFQDLGVDARTVSGLKEMKITTPTGIQQKSIPAILARHDILCAAQTGTGK 84
Query: 319 TLAYLLPVIQR-LRQEELQGLSKSTS-------GSPRVVILAPTAELASQVLSNCRSLSK 370
TLAYL+PVI++ LR+E + L + T G P ++L P+ ELA QV S + LS
Sbjct: 85 TLAYLVPVIEQILRKEAAKKLERETKGPTEVVLGRPSALVLLPSRELALQVASVAKQLSH 144
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
F S +T G R+ Q +N +D++I TPGR I +G + + ++DE D
Sbjct: 145 SA-KFASCTITSGERKSIQQKNTSRRLDLIIGTPGRVAKCISKGDFFVSCIDTVVVDEAD 203
Query: 431 ILFNDE-DFEVALQSLISSSPVTA-------QYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
LF+ + F L +++ + +A Q + AT+ I L + F + +VV
Sbjct: 204 TLFDAKMGFRKELDAVLGTIQASAAKRNQSLQMILAAATIRSPIDQILKKKFGELRVVSD 263
Query: 483 PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTC 542
+H+ + E V + + + E L+++ A +KT++FC +
Sbjct: 264 DKIHKTPASIREEFVRVNPESKHSALREALHLHRRRA----------AKTMIFCRNSASV 313
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
R E++L+ ++ + H + R + FT + LVCTD A+RG+
Sbjct: 314 RSTEHMLREHGFQD----AVCLHGDMPPARRHDAIHAFTEDSNVN---ILVCTDLAARGL 366
Query: 603 DFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
D V HVV+FDFP+ +YV R GRT R AG G V ++LA I R
Sbjct: 367 DVEAVKHVVMFDFPKSAVDYVHRAGRTGR-AGEQGLVTSLVTKHDLTLAMSIENSKRSNS 425
Query: 663 PLHDV 667
+ ++
Sbjct: 426 TIKEL 430
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 198/404 (49%), Gaps = 38/404 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G + +++++ Q + +P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 43 SFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQ 102
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 103 RLLP------LASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 155
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 156 VDMNPQTAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRML-DMGFLPDLQ 214
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + V +E + +
Sbjct: 215 RILNLLPSQRQTLLFSATFSAEI-KKLASTYLRDPVT-----------IEVARSNSTASN 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E A +K++A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 263 VRQIVFEVAEPDKQAAVVQLIRQRELKQVIVFCNSKIGASRLAKQLERDGVVATAI---- 318
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 319 -HGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 373
Query: 624 RRVGRTARGAGGTGKAFIFVVG---KQVSLAQRIMERNRKGHPL 664
R+GRT R AG +G A G KQ++ +++++R PL
Sbjct: 374 HRIGRTGR-AGASGDALSLFSGNERKQLADIEKLIKRALTIEPL 416
>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
HTCC2155]
gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
HTCC2155]
Length = 412
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 188/376 (50%), Gaps = 28/376 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++L DY+ ++ NF + IQA A P + EGK + Q+G+GKTLA+ P+I+
Sbjct: 2 SFEQLNFPDYLSRAVDNLNFSEATDIQAKAIPLIQEGKDLLAESQTGTGKTLAFSFPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQK 387
R+ + S G ++L PT ELA QV + ++ + P ++ + GG
Sbjct: 62 RINTLPPKKKKISILG----LVLVPTRELALQVEKAFTNYAEFSLRPIKTATLIGGENID 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ G+DVLIATPGR + LI G ++L+ L ILDE D + D F L+ L+
Sbjct: 118 GQIRKLRMGLDVLIATPGRIIELINLGEVRLVELEMLILDEADKML-DLGFADELKELLE 176
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ P Q L +ATLP ++ +L E F + V + RIS +GD +
Sbjct: 177 ALPKKRQNLLFSATLPQKV-QQLAEEFLNAAVEL-----RISRD------QITGDNIEQR 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E ++ L +L + TI+F + + + N LK+ ++ FH
Sbjct: 225 VIEVDANLRRQVLQKLFKDEQWKHTIIFVSSKRSAFNLANKLKK-----AGIQAQDFHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q+ R+ +K F L+ TD A+RGID + + HV+ +D PR P +YV R+G
Sbjct: 280 LTQDERIKVLKRFQNKDFP----ILIATDIAARGIDISKLSHVINYDLPRSPMDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A F+
Sbjct: 336 RTGR-AGQKGVAISFI 350
>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 382
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/373 (30%), Positives = 186/373 (49%), Gaps = 29/373 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL ++++LK + + P+ IQ A P V++G+ + Q+G+GKT A+ +P++Q
Sbjct: 3 FEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLLQI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E + + T R +ILAPT ELA Q N R+ K + + V+ GG Q Q
Sbjct: 63 LSRERINERAPRTI---RALILAPTRELALQTGENLRAYGKY-LGIKHTVIFGGVSQDAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ GVD+L+ATPGR + L+ +G ++L +++ +LDE D + D F ++ +++
Sbjct: 119 TRAMKAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRML-DMGFAHDMKRILAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P E+ + + K+ + P V + D
Sbjct: 178 PAAKQTLLFSATMPPEMKAMAGAILSNPVKIEVAP-------------VSSTADTIDQSV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KK+ L++L+ V +VF T +N+++ ++ R++ H
Sbjct: 225 YFVEKSGKKALLIELLRNQSVDSALVFTR---TKHGADNVVRALEK--ARIKAQAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F R++ LV TD A+RGID + HV+ FD P P YV R+GR
Sbjct: 280 SQAARQTALNNFKAKRTR----VLVATDIAARGIDVQELSHVINFDLPNIPETYVHRIGR 335
Query: 629 TAR-GAGGTGKAF 640
T R G GGT +F
Sbjct: 336 TGRAGMGGTALSF 348
>gi|408372746|ref|ZP_11170445.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407767098|gb|EKF75536.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 550
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 202/413 (48%), Gaps = 41/413 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR F LG + ++ ++ RQ F +PS IQA A P ++EG + Q+G+GKT A+ LP
Sbjct: 4 SRTGFATLGLPEALLTAIARQGFEQPSPIQAQAIPLLLEGHDLLGQAQTGTGKTAAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL + P+++ILAPT ELA QV C + + + + GG
Sbjct: 64 LLARL---------DVSLRQPQMLILAPTRELAIQVAKACEEFAANMPGLQVLPIYGGGE 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+TQL+ L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ +
Sbjct: 115 YRTQLKGLRAGAQVIVGTPGRVMDHMERGALKLDQLKALVLDEADEMLR-MGFIDDVKWV 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P + K+ + H +P ++ +D G S
Sbjct: 174 LERTPADCQLALFSATMP-PVIRKVAD------------QHLKNP--KQVQIDNGGATTS 218
Query: 506 DKTPE----TAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+ + A LNK AL +++E IVF T + + ++ +R+ R
Sbjct: 219 TQVRQRFWAVAGLNKLDALCRMLEAEDHDAVIVFVR---TKQATLELAEQLNRRNLRAEA 275
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
L + + Q+ R E T R K+ R LV TD +RG+D + HV+ +D P DP
Sbjct: 276 L--NGDIPQQQR-----EKTVQRLKDKRFDLLVATDVVARGLDVPRITHVINYDMPGDPE 328
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
YV R+GRT R AG G A +FV ++ L ++I R+ D+PS +L
Sbjct: 329 AYVHRIGRTGR-AGRNGDAILFVSRREQGLLRQIERITRQRIEKMDLPSVDDL 380
>gi|339444742|ref|YP_004710746.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
gi|338904494|dbj|BAK44345.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
Length = 504
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 189/374 (50%), Gaps = 31/374 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+++++++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP + R
Sbjct: 4 FNELGLSEHVLQAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ G +K G P ++++ PT ELA Q+ C +++ R + V GG + Q
Sbjct: 64 V------GHAKGGQG-PLMLVVTPTRELAQQIGEVCSAIA-VSTHHRILTVVGGLSYEPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVD+LIATPGR + L+++G ++L ++ +LDE D + D F A++ +I ++
Sbjct: 116 ISKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRML-DMGFWPAMKKIIGAT 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q L +AT+ I N + ++ + V + +E++++ + + D
Sbjct: 175 PSTRQTLLFSATIDASIKNSVGKLLHNPAFVEIAHKGETADTVEQYIIHTQQNLKPD--- 231
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
L L+ + + IVF T + ++ +R R + H+
Sbjct: 232 ---------LLKALLAEKGSERVIVFAR---TRSRADSTCRRLKRAGFTAEAI--HSDRS 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + F + R +V TD +RGID VD+VV +D P P +YV R+GRT
Sbjct: 278 QNQRRRALDNFASGRVG----VIVATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRT 333
Query: 630 ARGAGGTGKAFIFV 643
R AG G A FV
Sbjct: 334 GR-AGAAGFAVSFV 346
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 203/405 (50%), Gaps = 38/405 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G S ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL S +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------SANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML-DMGFLPDLQ 189
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + +
Sbjct: 190 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVRQIVYEV---H 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
ESDK+ A+ QLI + + + IVFCN + ++ +L++ T +
Sbjct: 247 ESDKS---------GAVAQLIRERELKQVIVFCNSKIGASRLARVLEKDGIVATAI---- 293
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 294 -HGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 348
Query: 624 RRVGRTARGAGGTGKAFIFVVG---KQVSLAQRIMERNRKGHPLH 665
R+GRT R AG +G A KQ++ +++++R + PL
Sbjct: 349 HRIGRTGR-AGASGDALSLCSANERKQLADIEKLIKRPLQVEPLE 392
>gi|452964578|gb|EME69615.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 480
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 117/395 (29%), Positives = 199/395 (50%), Gaps = 28/395 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P ++EG+ + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTSPTPIQEQSIPHLIEGRDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + KS RV++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDTFKKRAMPKSC----RVLVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + LI +G ++L ++ +LDE D + D F ++ +++
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRML-DMGFIQPIRKIVAMV 178
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P I V V+ P ++P V + D+ K
Sbjct: 179 PKQRQTVLFSATMPDSI------VGLANSVLHTPVRVEVTP------VSSTVDKIDQKVL 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K++ L ++ V + +VF +V +L++ + H
Sbjct: 227 FVDREHKRTLLTDILATDDVKRALVFTRTKHGANRVVELLEKAG-----ITADAIHGNKS 281
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + +F R K LV TD A+RGID G+ HV+ F+ P +P YV R+GRT
Sbjct: 282 QGARQKALADFRDGRIKA----LVATDIAARGIDVDGITHVINFELPNEPESYVHRIGRT 337
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
AR AG +G A G +V+ + I + R+ P+
Sbjct: 338 AR-AGASGIALSLCDGDEVAYLRDIEKTIRQAVPV 371
>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 452
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 120/370 (32%), Positives = 185/370 (50%), Gaps = 28/370 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L + + P+ IQ P ++EG+ + Q+G+GKT +++LP++ R
Sbjct: 4 FSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K+ R +IL+PT EL++Q+L N R S+ + S +V GG + Q
Sbjct: 64 LIEENRPTHPKTC----RALILSPTRELSAQILENVRGYSRH-MRVSSTLVVGGVKPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVL+ATPGR + L++ G ++L + ILDE D + D F A++ ++S
Sbjct: 119 IRALSKGVDVLVATPGRLLDLMQSGAVKLSETKILILDEADQML-DLGFFPAIRKIVSFL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q ++AT+P I E+ D K V R +E+ +V +
Sbjct: 178 PNKRQTALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKE------- 230
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+KK LL+L+ V + IVF K+ L + K + H
Sbjct: 231 -----SKKDLLLELMSDRAVERAIVFSRTKHGADKINRHLVDYGLKSAAI-----HGNKS 280
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R+ + F T K LV TD A+RGID V HVV D P P YV R+GRT
Sbjct: 281 QAQRIKALDGFKTGAVK----ILVATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRT 336
Query: 630 ARGAGGTGKA 639
AR AG +G A
Sbjct: 337 AR-AGKSGVA 345
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 185/386 (47%), Gaps = 32/386 (8%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+F F EL +D +++++K F S IQ A P V+EG+ + Q+G+GKT A+
Sbjct: 8 EFMDAVRFDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAF 67
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+P+++++ + P+ +IL PT ELA QV R L+K + + + G
Sbjct: 68 GIPLLEKM---------DTKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYG 118
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+ +L+ G ++++ TPGR M ++ L+L +L+ +LDE D + N F +
Sbjct: 119 GQNITNQIRSLKTGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLN-MGFREDI 177
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+S++ P Q L +AT+P I + + D K++ P +E++ +
Sbjct: 178 ESILKEVPEERQTLLFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPK 237
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
Q K L +L++ +IVFCN T R V+ + K
Sbjct: 238 Q------------KVEVLCRLLDMHSPKLSIVFCN---TKRMVDEVTGEL--KGRGYFAE 280
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H L Q R MK F R LV TD A+RGID VD V +D P+D Y
Sbjct: 281 GIHGDLKQSQRDRVMKSFRGGRVD----ILVATDVAARGIDVDDVDAVFNYDLPQDDEFY 336
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQV 648
V R+GRT R AG TG AF FV GK++
Sbjct: 337 VHRIGRTGR-AGRTGNAFTFVAGKEI 361
>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase [Acidiphilium cryptum JF-5]
gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
Length = 503
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 191/380 (50%), Gaps = 40/380 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++++L+ + +L P+ IQ A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 81 LSG------SRARARMPRSLILEPTRELALQVAENFVQYGKH-LKLNHALLIGGESMGEQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + + G L L ++R ++DE D + D F ++ ++S
Sbjct: 134 RDVLTRGVDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRML-DMGFIPDIERIVSLL 192
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGM--HRISPGLEEFLVDCSGDQE 504
P Q LF +AT+ EI +L + F P V P I+ GL LV
Sbjct: 193 PTMRQTLFFSATMAPEI-RRLADAFLSNPKQITVSRPATVATTITEGLS--LV------- 242
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
A +K+ AL +LI V +VFCN+ R V+ + K R + +L
Sbjct: 243 -------ATHDKREALRRLIRTEDVQNALVFCNR---KRDVDILCKSLTRHKFSAGML-- 290
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H + Q R A ++ F ++ E RL LVC+D A+RGID G+ HV FD P +YV
Sbjct: 291 HGDMPQSARFATLERF---KAGEIRL-LVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVH 346
Query: 625 RVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G+A
Sbjct: 347 RIGRTGR-AGMQGRALTLAT 365
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 193/378 (51%), Gaps = 33/378 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S ++ ++ + +P+ IQ A P + G+ + Q+G+GKT ++ LP+I+
Sbjct: 2 TFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ + PR ++LAPT ELA+QV N + +K ++ GG +
Sbjct: 62 RLSR------GRARARMPRSLVLAPTRELAAQVADNVKLYAKNH-KLNMALLIGGVSFEP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +G D+LIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 115 QKKILDQGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRML-DMGFIPDIERILKL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q LF +AT+P EI + LV+ F P+ V P + + + +F++ S +Q
Sbjct: 174 LPPRRQTLFFSATMPGEIKH-LVDTFLRDPERVEVTRPA--QTADTITQFILRVSDNQAR 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL I + V I+FCN+ R V+ + + R P H
Sbjct: 231 ---------TKREALRAAINRDGVKNGIIFCNR---KRDVDIVARSLQRHG--FSAAPIH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
LDQ R + EF +S E RL LV +D A+RG+D V HV D PR+ +YV R
Sbjct: 277 GDLDQSQRTKTLAEF---KSGELRL-LVASDVAARGLDIPAVSHVFNVDIPRNADDYVHR 332
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G+A V
Sbjct: 333 IGRTGR-AGQKGEAVTLV 349
>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 512
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 203/415 (48%), Gaps = 52/415 (12%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S F LG + ++ ++ + + + IQA A P ++ G+ + Q+G+GKT A+ LP
Sbjct: 7 SMTEFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLP 66
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++QRL Q + + +KS PRV+IL PT ELA Q+ + + + +P R V+ GG
Sbjct: 67 ILQRLFQNKKRVAAKS----PRVLILTPTRELALQIGDSFTTYGRH-LPIRRTVIHGGVG 121
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q+ + GV+VLIATPGR + L+ + + L + +LDE D + D F ++ +
Sbjct: 122 QSPQVAAIARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEADRML-DMGFIRDVRKV 180
Query: 446 ISSSPVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFL 496
++ P Q L +AT+P V++ N + +EV P V RI+ + L
Sbjct: 181 VAVLPKERQTLLFSATMPDAVVDLANSILTDAERIEVTPQSTTV-----ERIN---QRVL 232
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
GD K+ L L+E +++TIVF ++ + LK+
Sbjct: 233 FVERGD-------------KRRLLADLLEDEAMARTIVFARTKHGADRIADHLKKAG--- 276
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ H Q R+ ++ F R+ E R LV TD A+RGID G+ HV+ FD P
Sbjct: 277 --ITADAIHGDKSQSARVRALESF---RNGELRA-LVATDIAARGIDIDGISHVINFDLP 330
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLH 665
+P YV R+GRTAR AG G A F ++V + I + R+ HP H
Sbjct: 331 NEPESYVHRIGRTAR-AGTDGSAVSFCDHEEVGYLKDIEKTIRQPIPADASHPYH 384
>gi|389638792|ref|XP_003717029.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae 70-15]
gi|152032523|sp|A4R8B5.2|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
gi|351642848|gb|EHA50710.1| ATP-dependent RNA helicase HAS1 [Magnaporthe oryzae 70-15]
Length = 587
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 195/393 (49%), Gaps = 45/393 (11%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F EL S+ +++++ F + ++IQ PP++ GK + A ++GSGKTLA+L+P +
Sbjct: 112 QAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ LR L+ ++ +G V++++PT ELA Q+ R L K +V+ GG ++
Sbjct: 172 EMLRS--LKFKPRNGTG---VIVVSPTRELALQIFGVARDLMKHHSQTYGIVI-GGANRR 225
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+ E L +GV++LIATPGR + ++ NLR ++DE D + + FE ++ +I
Sbjct: 226 AEAEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRIL-EIGFEDEMRQIIK 284
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----------MHRISPGLEEFLV 497
P Q + +AT ++ + +V + PG + GLE+ V
Sbjct: 285 ILPKERQSMLFSATQTTKVEDL-------ARVSLRPGPLYLNVDEEKEYSTVEGLEQGYV 337
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
C D+ F+ L ++K K IVF + + + +L D
Sbjct: 338 VCEADKR--------FI----LLFSFLQKMKKKKIIVFFSSCNSVKYYAELLNYID---- 381
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+VL H Q+ R EF + R L+CTD A+RG+D VD +V FD P
Sbjct: 382 -CQVLDLHGKQKQQKRTNTFFEFCNAD----RGTLICTDVAARGLDIPAVDWIVQFDPPD 436
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL 650
DP +Y+ RVGRTARG G++ +F++ +V
Sbjct: 437 DPRDYIHRVGRTARGTNKKGRSLMFLLPSEVGF 469
>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
Length = 510
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 128/380 (33%), Positives = 191/380 (50%), Gaps = 40/380 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++++L+ + +L P+ IQ A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 28 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 87
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 88 LSG------SRARARMPRSLILEPTRELALQVAENFVQYGKH-LKLNHALLIGGESMGEQ 140
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + + G L L ++R ++DE D + D F ++ ++S
Sbjct: 141 RDVLTRGVDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRML-DMGFIPDIERIVSLL 199
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGM--HRISPGLEEFLVDCSGDQE 504
P Q LF +AT+ EI +L + F P V P I+ GL LV
Sbjct: 200 PTMRQTLFFSATMAPEI-RRLADAFLSNPKQITVSRPATVATTITEGLS--LV------- 249
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
A +K+ AL +LI V +VFCN+ R V+ + K R + +L
Sbjct: 250 -------ATHDKREALRRLIRTEDVQNALVFCNR---KRDVDILCKSLTRHKFSAGML-- 297
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H + Q R A ++ F ++ E RL LVC+D A+RGID G+ HV FD P +YV
Sbjct: 298 HGDMPQSARFATLERF---KAGEIRL-LVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVH 353
Query: 625 RVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G+A
Sbjct: 354 RIGRTGR-AGMQGRALTLAT 372
>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
Length = 349
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/371 (31%), Positives = 191/371 (51%), Gaps = 33/371 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++++L N +P+ IQ + P ++ I A Q+GSGKTLAYL P++
Sbjct: 3 SFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLR++E + + PR I+ P ELA+Q+L +SL FRS+ + GG +QK
Sbjct: 63 RLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH-HARFRSVGLIGGRKQKW 121
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
++L+ VD+L+ATPG + ++ L +L ++DE D +F D F+ ++ +
Sbjct: 122 MRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMF-DASFKSLTMEILHT 180
Query: 449 SPVTAQYLFVTATLP--------VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
V+ L T+ +E K V+ C G+HR+ P + + +
Sbjct: 181 INVSQLQLIYNFTVYQSLQRLSCIEASEKTVKHLETC----SSGLHRVLPHVRHKFIKLN 236
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+++++ E LL+ KSP +TIVFCN +C + L++ + +
Sbjct: 237 QHEKAERIVE---------LLKKDSKSP-GQTIVFCNSASSCDWLARHLEQHN-----LS 281
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
++ H + + R ++F ++K A + LVCTD ASRG+D + V HV+ FDFP
Sbjct: 282 LIRLHGNIPPKIRCERFEKF---QNKTADI-LVCTDIASRGLDTSDVSHVINFDFPNSMV 337
Query: 621 EYVRRVGRTAR 631
+Y+ RVGRT R
Sbjct: 338 DYIHRVGRTGR 348
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 121/404 (29%), Positives = 202/404 (50%), Gaps = 38/404 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + +P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N S +K RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTA-LRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKARQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A+++LI + + IVFCN + ++ +L+R T +
Sbjct: 241 EGD---------KQAAVVKLIRDRALKQVIVFCNSKIGASRLARLLERDGVVATAI---- 287
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ ++ F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 288 -HGDRSQNERMQALEAFKRGEVEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 342
Query: 624 RRVGRTARGAGGTGKAFIFVVG---KQVSLAQRIMERNRKGHPL 664
R+GRT R AG +G A KQ++ +++++R+ PL
Sbjct: 343 HRIGRTGR-AGASGDALSLCSPNERKQLADIEKLIKRDLPLQPL 385
>gi|449116380|ref|ZP_21752831.1| hypothetical protein HMPREF9726_00816 [Treponema denticola H-22]
gi|448954267|gb|EMB35050.1| hypothetical protein HMPREF9726_00816 [Treponema denticola H-22]
Length = 570
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIIVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris BisA53]
gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
BisA53]
Length = 490
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 195/387 (50%), Gaps = 30/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ G ++ + +L +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQVFGLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ L K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RMLENRIKPLPKTC----RVLVLSPTRELSGQILESFNAYGRH-IRLASALAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G+DVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 132 QVRSIMPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRML-DMGFIHDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + D+ + +
Sbjct: 191 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VASTVDRITQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L Q++++ V++ +VF T + ++K R + H
Sbjct: 238 VIQLDHSAKPTVLAQILKQDDVNRALVFTR---TKHGADKVVKGLARAGIAAEAI--HGN 292
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F T L LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 293 KSQNHRERVLAAFRTGEI----LTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIG 348
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR AG G A G++++ + I
Sbjct: 349 RTAR-AGAEGVAISLCAGEELAYLRDI 374
>gi|422562735|ref|ZP_16638412.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
Length = 560
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 192/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P QIQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
4126]
gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
4126]
Length = 439
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 196/408 (48%), Gaps = 34/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ + + ++ + +PS+IQ A P ++ G I Q+G+GKT A++LP++
Sbjct: 7 SFQDFKLNKQLFNAIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLM 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ + PR +I+APT EL QV N L K R++ + GG K
Sbjct: 67 KLKY--------AQGHDPRALIIAPTRELVMQVYENILELGKY-TDLRTVCLYGGIGPKK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + + EG D+++ATPGR + + G+LQ ++ ILDE D + D F ++ ++
Sbjct: 118 QAQEVAEGCDIIVATPGRLLDIYSAGVLQPKQIKTFILDEADRMM-DMGFMPQIRRVLEL 176
Query: 449 SPVTAQYLFVTATLP--VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P+ Q LF +AT P VE Y FP+ KV + P E + +Q
Sbjct: 177 LPMKKQNLFFSATFPEKVEKYAYEFTDFPE-KVEVTP----------ETMTAELIEQSLY 225
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
P FL K + L L E S+ ++F V + ++R +E RV HA
Sbjct: 226 HVPN--FLTKINLLKYLFENEDFSRVLIFVRTRKNANNVYSFIERKISEEVRV----IHA 279
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q TR+ + EF +S R+ LV TD +RGID V HV+ F+ P +YV R+
Sbjct: 280 NKAQSTRINAINEF---KSGNVRV-LVSTDVTARGIDVEEVSHVINFEVPNKYEDYVHRI 335
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
GRT R A G A FV V +I E +K + D+P ELM
Sbjct: 336 GRTGR-AEHHGIAISFVDPSDVYHINKIEELIQKKIKVIDLPKEIELM 382
>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
Length = 652
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 192/389 (49%), Gaps = 28/389 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E G DY++ +K+ F +P+ IQA +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 120 FNEGGFPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVLPAVVH 179
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q L+ S P +ILAPT ELA Q+ + R+ + GG ++
Sbjct: 180 INNQPRLE-----HSDGPIALILAPTRELAQQIQQVANEFG-SQIQVRNTCIFGGAPKQP 233
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L+ GV+++IATPGR + ++ G+ L +LDE D + D FE ++ +I
Sbjct: 234 QSRDLERGVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRML-DMGFEPQIRKIIKQ 292
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F D + + G +S +VD +E++K
Sbjct: 293 IRPDRQVLMWSATWPKEVRN-LAEEFLDNYIQINIGSLTLSANHNILQIVDVC--EEAEK 349
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T NK + LL I +KTI+F + T ++V+ I + R+ R + H
Sbjct: 350 T------NKLNKLLGEISSEKDTKTIIF---VETKKRVDEITRSISRQGWRACAI--HGD 398
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + F RS LV TD A+RG+D V V+ +D+P + +YV R+G
Sbjct: 399 KSQQERDYVLTSFRNGRSS----ILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIG 454
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIME 656
RT R + TG A+ + A +++
Sbjct: 455 RTGR-SNNTGTAYTLFTTANANKANDLIQ 482
>gi|449105282|ref|ZP_21741987.1| hypothetical protein HMPREF9729_00252 [Treponema denticola ASLM]
gi|451969588|ref|ZP_21922817.1| hypothetical protein HMPREF9728_02019 [Treponema denticola US-Trep]
gi|448967269|gb|EMB47910.1| hypothetical protein HMPREF9729_00252 [Treponema denticola ASLM]
gi|451701685|gb|EMD56146.1| hypothetical protein HMPREF9728_02019 [Treponema denticola US-Trep]
Length = 570
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIIVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|126644825|ref|XP_001388129.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium parvum
Iowa II]
gi|126117357|gb|EAZ51457.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
parvum Iowa II]
gi|323509235|dbj|BAJ77510.1| cgd3_3920 [Cryptosporidium parvum]
Length = 519
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 206/406 (50%), Gaps = 45/406 (11%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
++FS F+ D + ++LK ++IQA A P ++ GK + A ++GSGKTLA+
Sbjct: 21 EYFSDVKFESSNICDQLKKALKEMGMETMTEIQAKAIPRILNGKDVLGAAKTGSGKTLAF 80
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P L E L ++ +G V++++PT EL+ Q+ CR L K +P +V G
Sbjct: 81 LIPAANLLYNVEF--LPRNGTG---VIVISPTRELSLQIYEVCRELCKY-LPQTHGLVMG 134
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM--------FLIKEGILQLINLRCAILDEVDILFN 434
G ++T+ E L +GV++L+ATPGR + FL K L+NL ++DE D +
Sbjct: 135 GANRRTEAEKLSKGVNILVATPGRLLDHLQNTKQFLFK----NLLNL---VIDEADRIL- 186
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS--PGL 492
+ FE + +I P Q +AT ++ + + + +V I+ GL
Sbjct: 187 EIGFEEEMNQIIKLLPKERQTSLFSATQTTKVADLVRLSLKNPVLVESKNTSSIATVSGL 246
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552
E+ V +Q FL L ++K+ K +VF + ++ + E +
Sbjct: 247 EQGYVIAQANQR--------FL----LLYTFLKKNRDKKVMVFFSSCMSTKFHEELFNYV 294
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
D + + H Q +R+ +F ++ + L+CTD A+RG+D VD +V
Sbjct: 295 DLTCSSI-----HGKKKQTSRMQTYYDFCSAD----KGLLLCTDVAARGLDIPNVDWIVQ 345
Query: 613 FDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
+D P DP EY+ RVGRTARGAGGTGKA +F++ ++++ Q + + N
Sbjct: 346 YDPPDDPREYIHRVGRTARGAGGTGKALLFLLPEEIAFLQYLKKMN 391
>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 524
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 131/414 (31%), Positives = 200/414 (48%), Gaps = 43/414 (10%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S F LG + ++ ++ F +PSQIQ + P + G I Q+G+GKT AY L
Sbjct: 1 MSDNQFATLGLKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ ++ ST+ + +ILAPT ELA QV LSK + V GG
Sbjct: 61 PILTKM----------STNKGIKALILAPTRELAVQVKDEMNRLSKYE-KAEILAVYGGD 109
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ L++GVDV++ TPGR + LIK L L ++ +LDE D + N F ++S
Sbjct: 110 SIDRQIRALRKGVDVVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLN-MGFIDDIES 168
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEE--FLVDCS 500
++S +P Q L +AT+P I KL + + PD K+V +E+ F+++
Sbjct: 169 ILSHTPEERQTLLFSATMPDPIA-KLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNK 227
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
++ AL +L++ S I+FC T R V+ +++ K V
Sbjct: 228 --------------HRLEALCRLLDLDNPSSAIIFCR---TKRGVDELVQELQSKGYMVE 270
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
H + Q RL + +F KE L L+ TD A+RGID GV HV +D P+D
Sbjct: 271 --GMHGDMTQAHRLTTLSKF-----KEGTLNLLIATDVAARGIDVDGVTHVFNYDLPQDV 323
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
YV R+GRT R A G A+ V K S+ ++I + + VP+A E+
Sbjct: 324 ESYVHRIGRTGR-ANREGTAYSLVTPKDFSMLKQIQKVTKSAITQKPVPTAEEI 376
>gi|449124175|ref|ZP_21760494.1| hypothetical protein HMPREF9723_00538 [Treponema denticola OTK]
gi|448942506|gb|EMB23400.1| hypothetical protein HMPREF9723_00538 [Treponema denticola OTK]
Length = 570
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|402084250|gb|EJT79268.1| ATP-dependent RNA helicase HAS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 615
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/401 (29%), Positives = 202/401 (50%), Gaps = 51/401 (12%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D + ++F ELG S+ ++++K F + ++IQ PP++ GK + A ++GSGKTLA+
Sbjct: 129 DATAAQAFDELGLSENTMKAIKEMGFDKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAF 188
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---V 379
L+P ++ LR L+ ++ +G V++++PT ELA Q+ R+L + F S +
Sbjct: 189 LIPAVEMLRS--LKFKPRNGTG---VIVVSPTRELALQIFGVARNLMQ----FHSQTYGI 239
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
GG ++ ++E L +GV++LIATPGR + ++ NLR ++DE D + + FE
Sbjct: 240 CIGGANRRAEVEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRIL-EIGFE 298
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS---------- 489
++ +I P Q + +AT ++ + +V + PG ++
Sbjct: 299 DEMRQIIKILPKERQSMLFSATQTTKVEDL-------ARVSLRPGPLYLNVDEEKQFSTV 351
Query: 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENIL 549
G+E+ + C D+ FL L ++K K IVF + + + +L
Sbjct: 352 EGVEQGYIVCEADKR--------FL----LLFSFLKKMHKKKIIVFFSSCNSVKYYAELL 399
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
D ++VL H Q+ R EF + R L+CTD A+RG+D VD
Sbjct: 400 NYID-----LQVLDLHGKQKQQKRTNTFFEFCNAE----RGTLICTDVAARGLDIPAVDW 450
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL 650
+V FD P DP +Y+ RVGRTARG+ G + +F++ +V
Sbjct: 451 IVQFDPPDDPRDYIHRVGRTARGSSKKGSSLMFLLPSEVGF 491
>gi|449104683|ref|ZP_21741421.1| hypothetical protein HMPREF9730_02318 [Treponema denticola AL-2]
gi|448962819|gb|EMB43505.1| hypothetical protein HMPREF9730_02318 [Treponema denticola AL-2]
Length = 570
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|359407402|ref|ZP_09199879.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677441|gb|EHI49785.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 471
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 202/413 (48%), Gaps = 37/413 (8%)
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
R+ G F SF +LG S+ ++ ++ + +P+ IQ+ + P V+ G+ + + Q+
Sbjct: 12 RYSCWKKGFFAISSSFIDLGLSNELVNAVTLLGYEQPTPIQSASIPSVLMGRDILGSAQT 71
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
G+GKT ++ LP+I ++ ++ + PR +ILAPT ELA+QV S K V
Sbjct: 72 GTGKTASFTLPMI------DILAAGRAKARMPRSLILAPTRELAAQV---AESFEKFSVN 122
Query: 375 FR-SM-VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432
+ SM ++ GG Q L +GVDVLIATPGR + + G + L +++ ++DE D +
Sbjct: 123 HKMSMALLIGGVSFSDQDAALSKGVDVLIATPGRLLDHFERGKVLLQDVKILVIDEADRM 182
Query: 433 FNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PG 491
D F ++ ++S PV Q LF +ATL EI+ K VM P + ++ P
Sbjct: 183 L-DMGFIPDVERIVSYLPVMRQTLFFSATLSEEIHT------IGRKFVMNPKLIEVAKPA 235
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551
+ D + T K+ AL +L+ + ++FCN+ R + +L
Sbjct: 236 -------TTADTITQHLLRTTGKQKRGALRELLRAEEIQNAVIFCNR---KRDISTLLSS 285
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611
R L H + Q RLA + +F T L+ +D A+RG+D V HV
Sbjct: 286 LKRHGFNAAAL--HGDMTQSARLAALDDFKTGTVP----LLIASDVAARGLDIPTVSHVF 339
Query: 612 LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
FD P + +YV R+GRT R AG G+AF G A + +E+ G P+
Sbjct: 340 NFDVPSNAEDYVHRIGRTGR-AGRQGRAFTLAAGDDDEKAVQAIEK-LTGQPI 390
>gi|449129185|ref|ZP_21765416.1| hypothetical protein HMPREF9724_00081 [Treponema denticola SP37]
gi|448946027|gb|EMB26892.1| hypothetical protein HMPREF9724_00081 [Treponema denticola SP37]
Length = 570
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 490
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 125/401 (31%), Positives = 191/401 (47%), Gaps = 30/401 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQ A P + G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR V+LAPT ELA QV + +K G +++ GG Q
Sbjct: 64 LAS------GRARARMPRAVVLAPTRELADQVAESFAKYAK-GTRLNWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L G + L + ++DE D + D F ++ + +
Sbjct: 117 IAALNKGVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D RI D Q + P
Sbjct: 176 PPRRQTLFFSATMPPEITRLTQQFLKDPT--------RIEVARPATTADTIT-QHITRLP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+ K++AL L+E+ V IVFCN RK E + + P H LD
Sbjct: 227 SSDPKAKRTALRALVERGDVQNGIVFCN-----RKSEVDIVAKSLQVHGFNAAPIHGDLD 281
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R+ + +F RS E +L LV +D A+RG+D V HV +D P +YV R+GRT
Sbjct: 282 QSLRMKTLSDF---RSGELKL-LVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRT 337
Query: 630 ARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGHPLHDV 667
R AG G+AF+ V K + +++++ PL D+
Sbjct: 338 GR-AGRLGEAFMIVTPADDKSLDKVLKLIKKEPVELPLDDI 377
>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
Length = 397
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 122/399 (30%), Positives = 200/399 (50%), Gaps = 36/399 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKE + +I+ + + + +P+ IQ P ++ G + Q+G+GKT A+ LP+I
Sbjct: 4 FKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINN 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +KST R +IL PT ELASQ++ N + G+ ++ VV GG ++ Q
Sbjct: 64 FGRNKIDINAKST----RSLILTPTRELASQIMQNIDDYAD-GLGLKTKVVYGGVGRQNQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++++ G+D+L+ATPGR + LIK + L +LDE D + D F +Q +IS
Sbjct: 119 VDSIALGLDILVATPGRLLDLIKTDDINFKALEVFVLDEADTML-DMGFFKDVQRIISKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP---GLEEFLVDCSGDQESD 506
P Q L +AT+P EI E+ D ++ P +I+ +E ++S+
Sbjct: 178 PKNRQTLLFSATMPAEI-----EILADA-ILTDPTKIQITAETVTIERINQSVYHLEKSN 231
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K P LL ++EKS K ++FC T + I++ + E + H+
Sbjct: 232 KVP---------LLLNILEKSHYKKVLIFCK---TKPGADIIVEALE--EASITAASLHS 277
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R ++ F K++ L LV TD A+RGID + V+ ++ P DP Y+ R
Sbjct: 278 GKTQAVREEALQNF-----KDSNLSVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
+GRTAR AG +G A F V ++L I + K P+
Sbjct: 333 IGRTAR-AGKSGIAISFAVENDITLLNSIEKSIGKAIPV 370
>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
Length = 625
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 196/403 (48%), Gaps = 36/403 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L S ++++++ + PS IQA A P +++G + Q+G+GKT A+ LP++ +
Sbjct: 31 FADLALSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSK 90
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L LS++ P++++LAPT ELA QV + + F + + GG +Q
Sbjct: 91 L------DLSQN---EPQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQ 141
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L+ GV V++ TPGR M ++ G L L NL+ +LDE D + F ++ ++ +
Sbjct: 142 LRQLKRGVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLR-MGFIDDVEWILEHT 200
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q +AT+P EI D K + + +E+ SG
Sbjct: 201 PETRQTALFSATMPREIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSG-------- 252
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK AL +++E P I+F K T E + R P + +
Sbjct: 253 ----TNKLDALTRILEVEPFDGMIIFVRTKTATVELAEKLEAR------GYSAAPLNGDM 302
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+Q+ ++E T R K ++L ++ TD A+RGID V HVV +D P D YV R+G
Sbjct: 303 NQQ-----LRERTIERLKTSKLDIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIG 357
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG +GKA +FV ++ L I + RK L ++PS
Sbjct: 358 RTGR-AGRSGKAILFVAPREKRLLYTIEKATRKPITLMELPSG 399
>gi|42527612|ref|NP_972710.1| DEAD/DEAH box helicase [Treponema denticola ATCC 35405]
gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
denticola ATCC 35405]
Length = 570
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|422341598|ref|ZP_16422539.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
denticola F0402]
gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
denticola F0402]
Length = 570
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 183/379 (48%), Gaps = 32/379 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL +D +++++K F S IQ A P V+EG+ + Q+G+GKT A+ +P++++
Sbjct: 6 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + P+ +IL PT ELA QV R L+K + + + GG Q
Sbjct: 66 M---------DTKVKRPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +L+ G ++++ TPGR M ++ L+L +L+ +LDE D + N F ++S++
Sbjct: 117 IRSLKTGANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLN-MGFREDIESILKEV 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P I + + D K++ P +E++ + Q
Sbjct: 176 PEERQTLLFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQ------ 229
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K L +L++ +IVFCN T R V+ + K H L
Sbjct: 230 ------KVEVLCRLLDMHSPKLSIVFCN---TKRMVDEVTGEL--KGRGYFAEGIHGDLK 278
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R MK F R LV TD A+RGID VD V +D P+D YV R+GRT
Sbjct: 279 QSQRDRVMKSFRGGRVD----ILVATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRT 334
Query: 630 ARGAGGTGKAFIFVVGKQV 648
R AG TG AF FV GK++
Sbjct: 335 GR-AGRTGNAFTFVAGKEI 352
>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
Length = 1201
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 192/390 (49%), Gaps = 26/390 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E Y++E++ R+ +LRP+ IQA +P + G+ + Q+GSGKTL Y+LP I
Sbjct: 112 QYFEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAI 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + S+ P V+ILAPT ELA Q+ S + R+ + GG +
Sbjct: 172 VHI----IHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAA-VRNTCIFGGAPKG 226
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L++G+++ IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 227 PQAHDLEKGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRML-DMGFEPQIRKIIE 285
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE-EFLVDCSGDQESD 506
Q L +AT P E+ L E F + + G +S ++D + E D
Sbjct: 286 QIRPDRQVLMWSATWPKEV-RALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKD 344
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K LLQ I +KTI+F + T RKV++I K R+ + + H
Sbjct: 345 L--------KLYRLLQEIGTEKENKTIIF---VETKRKVDDITKNIRREGW--QAVSIHG 391
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+Q+ R ++EF ++ LV TD A+RG+D V +V+ FDFP +Y+ R+
Sbjct: 392 DKNQQERDHVLQEFRNGKAP----ILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRI 447
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
GRT R TG A+ F + A ++E
Sbjct: 448 GRTGRKR-QTGTAYAFFTTHNMKHAGDLIE 476
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 181/373 (48%), Gaps = 24/373 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 707 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 766
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + S + P +ILAPT ELA Q+ R+ + GG + Q
Sbjct: 767 INHQP----RLSRNDGPIALILAPTRELAQQIQQVASDFGMSS-QVRNTCIFGGAPKGPQ 821
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 822 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 880
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 881 RPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDVCE 932
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E +K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 933 EYEKESKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGDKS 987
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+GRT
Sbjct: 988 QQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRT 1043
Query: 630 ARGAGGTGKAFIF 642
R + TG A+ F
Sbjct: 1044 GR-SQRTGTAYAF 1055
>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
Length = 744
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 207/452 (45%), Gaps = 52/452 (11%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPK------------------------QRHKYSADGDFFS 266
DR ++G ++ N+++EP D +H+ + G
Sbjct: 55 FDRQSQNGKNLRNIKWEPQDLTPFEKNFYQPSATLVGLSETEIEGYLNKHQITLKGREVP 114
Query: 267 RKS--FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
R S F++ G Y++E LKRQ F +P+ IQA P + G+ + Q+GSGKTLAY++
Sbjct: 115 RPSMDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVV 174
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P + ++ +E S P +ILAPT ELA Q+ V + V GG
Sbjct: 175 PSLVHIQHQE----SIRRGDGPIALILAPTRELAQQIQQVATDFGSR-VSANNTCVFGGA 229
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++
Sbjct: 230 PKGPQIRDLERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRML-DMGFEPQIRK 288
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
++ Q L +AT P E+ +L E F + + G +S +VD D
Sbjct: 289 IMGQIRPDRQVLMWSATWPKEV-RQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDY 347
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D+ K LL I P +KTI+F + T R+V++I + +R R +
Sbjct: 348 EKDQ--------KLMKLLTEISAEPDTKTIIF---VETKRRVDDITRIVNRNG--WRAVA 394
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q+ R + F R LV TD A+RG+D V V+ +D+P + +YV
Sbjct: 395 IHGDKSQQERDYVLSAFRNGRQG----ILVATDVAARGLDVEDVKFVINYDYPSNSEDYV 450
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
R+GRT R + TG A+ + A ++
Sbjct: 451 HRIGRTGR-SNNTGTAYTLFTHSNANKANDLI 481
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 188/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 NFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + + IVFCN + ++ L+R V
Sbjct: 263 EGD---------KQAAVVQLLRERGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 308
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 309 IHGDKSQLERMQALDAFKRGEVEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 364
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 365 HRIGRTGR-AGATGDAL 380
>gi|338973033|ref|ZP_08628403.1| ATP-dependent RNA helicase RhlE [Bradyrhizobiaceae bacterium SG-6C]
gi|338233786|gb|EGP08906.1| ATP-dependent RNA helicase RhlE [Bradyrhizobiaceae bacterium SG-6C]
Length = 489
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 197/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALKEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-MRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ +GV+V++ATPGR + +++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRSVMQGVEVMVATPGRLLDMVQGNALKLNQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + K
Sbjct: 177 LPIKRQTLFFSATMPKDIADLADQMLNDPARVAVTP-------------VSSTVERITQK 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL++ PV++ +VF T + ++K + + H
Sbjct: 224 VLQVDHSAKPAILAQLLKNEPVNRALVFTR---TKHGADKVVKGLVKAGIPAEAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F T + LV TD A+RGID G+ HV+ FD P YV R+G
Sbjct: 279 KSQNHRERVLAAFRTGDIRT----LVATDIAARGIDVDGISHVINFDLTNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 335 RTAR-AGADGTAISLVAGAEELGYLRDIER 363
>gi|399057862|ref|ZP_10744291.1| DNA/RNA helicase, superfamily II [Novosphingobium sp. AP12]
gi|398041610|gb|EJL34666.1| DNA/RNA helicase, superfamily II [Novosphingobium sp. AP12]
Length = 499
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 179/362 (49%), Gaps = 37/362 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++S++ + P+ IQA PPV+ K I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLQSVEAAGYTEPTPIQAQTIPPVLMMKDIIGIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G + + PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 61 -----DILGHGRRRALMPRSLILEPTRELAAQVAENFEKYGK-NHDLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L GVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QLKALSAGVDVLIATPGRLMDLFERGKIMLTGCELLVIDEADRML-DMGFIPDIETICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P + S + V G
Sbjct: 174 LPANRQTLLFSATMP-PVIKKLADRFLTNPKYIEVARPASNNTSIVQHKVAVSSRG---- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL Q+++ V+ IVF N+ T R++ LK + + H
Sbjct: 229 ----------KREALRQILKTDNVTTAIVFANRKTTVRELAKSLKSYGFSAGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVC-TDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+DQ +R A ++ F K + ++C +D A+RG+D GV HV FD P P +YV
Sbjct: 274 GDMDQASRNAELERF-----KAGEISILCASDVAARGLDVKGVSHVFNFDTPWHPDDYVH 328
Query: 625 RV 626
R+
Sbjct: 329 RI 330
>gi|449111386|ref|ZP_21747983.1| hypothetical protein HMPREF9735_01032 [Treponema denticola ATCC
33521]
gi|449113799|ref|ZP_21750282.1| hypothetical protein HMPREF9721_00800 [Treponema denticola ATCC
35404]
gi|448957882|gb|EMB38621.1| hypothetical protein HMPREF9721_00800 [Treponema denticola ATCC
35404]
gi|448958413|gb|EMB39144.1| hypothetical protein HMPREF9735_01032 [Treponema denticola ATCC
33521]
Length = 570
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPGARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|449127864|ref|ZP_21764134.1| hypothetical protein HMPREF9733_01537 [Treponema denticola SP33]
gi|448943196|gb|EMB24088.1| hypothetical protein HMPREF9733_01537 [Treponema denticola SP33]
Length = 570
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGRVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|383645365|ref|ZP_09957771.1| putative helicase [Sphingomonas elodea ATCC 31461]
Length = 478
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 184/363 (50%), Gaps = 37/363 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++ ++ + P+ IQ A P V+ GK I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLRAVTDAGYTEPTPIQRQAIPSVLMGKDLIGIAQTGTGKTAAFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR-SM-VVTGGFRQ 386
L G ++ + PR +IL PT ELA+QV N K G+ + SM ++ GG +
Sbjct: 62 VL------GEGRTRALMPRSLILEPTRELAAQVAEN---FEKYGLNHKLSMALLIGGVQM 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L++GVDVLIATPGR M L G + L ++DE D + D F ++ +
Sbjct: 113 GDQVKALEKGVDVLIATPGRLMDLYGRGKILLTGCSLLVIDEADRML-DMGFIPDIEEIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ P Q L +AT+P I KL + F P V P ++ + + +V
Sbjct: 172 TKLPKNRQTLLFSATMPPPI-KKLADKFLTDPKTIEVARPATTNVN--ITQRIV------ 222
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ P TA + K+ L +L+++ VS I+FCN+ T R + LK+ + +
Sbjct: 223 ---QVPATAHV-KRDVLRRLLQQDEVSTAIIFCNRKTTVRDLNKSLKKHGFRSAEI---- 274
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +DQ R+A + F LV +D A+RG+D GV HV FD P P +YV
Sbjct: 275 -HGDMDQSARIAELDRFKNGDVN----ILVASDVAARGLDVKGVSHVFNFDAPWHPDDYV 329
Query: 624 RRV 626
R+
Sbjct: 330 HRI 332
>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 434
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 184/385 (47%), Gaps = 35/385 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + +++SL F P+++Q A PP +EG+ I+ ++GSGKT A+L+P+I
Sbjct: 2 FDSMNIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIINN 61
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ S P +++ PT ELA QV + + + R+ V GG Q
Sbjct: 62 LKK----------SHYPSAMVIVPTRELAMQVTDVAKQIGH-NIGIRTFTVYGGASINIQ 110
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E ++ GV++++ TPGR + LIK G L ++ +LDE DI+ D F ++ ++S
Sbjct: 111 IEAIRAGVNIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIML-DMGFIDDVKYILSKI 169
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q +F +AT+P EI + + ++ I+ +E VD S
Sbjct: 170 PQEKQTMFFSATIPSEI-RAVTNKYTKNPII-------INIDSKEVTVDTIEHYYSIARV 221
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
FL LL I+ K+IVFC + ++ IL++ + + H L
Sbjct: 222 ADKFL----TLLAYIDTKKPKKSIVFCRTQINAERIHTILRKVG-----IPAVLMHGGLS 272
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R E + S K L+ T+ ASRG+D V ++ FD DP YV RVGRT
Sbjct: 273 QSRR-----EHSLSLFKSGTEMLIATNVASRGLDIDNVSDIINFDAEEDPKAYVHRVGRT 327
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRI 654
AR G +G+AF + ++ L I
Sbjct: 328 AR-MGKSGRAFTILTPRERYLVYDI 351
>gi|449108862|ref|ZP_21745503.1| hypothetical protein HMPREF9722_01199 [Treponema denticola ATCC
33520]
gi|449119551|ref|ZP_21755947.1| hypothetical protein HMPREF9725_01412 [Treponema denticola H1-T]
gi|449121942|ref|ZP_21758288.1| hypothetical protein HMPREF9727_01048 [Treponema denticola MYR-T]
gi|448949383|gb|EMB30208.1| hypothetical protein HMPREF9727_01048 [Treponema denticola MYR-T]
gi|448950541|gb|EMB31363.1| hypothetical protein HMPREF9725_01412 [Treponema denticola H1-T]
gi|448961137|gb|EMB41845.1| hypothetical protein HMPREF9722_01199 [Treponema denticola ATCC
33520]
Length = 570
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 194/376 (51%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T AL++LI+ SP +VFC + +++ K D + L H
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTKIDA---DDVAKELDERHYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F RSK+ R+ LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQSQREKILERF---RSKKTRI-LVATDVAARGIDIEGISHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 332 RTGR-AGAAGVAVSFV 346
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 118/404 (29%), Positives = 191/404 (47%), Gaps = 35/404 (8%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+ D + F LG D ++ ++++ ++ PS IQA P +++G + Q+G+GKT
Sbjct: 62 NNDTETESGFAGLGLPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTA 121
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
A+ LP + RL +T P+V++LAPT ELA Q S + + +
Sbjct: 122 AFALPALSRL---------DTTERHPQVLVLAPTRELALQSADAFESFASHIGGVSILPI 172
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG QL L+ G V++ TPGR + +++G L L +LR +LDE D + N F+
Sbjct: 173 YGGAPYGAQLSGLRRGAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLN-MGFQE 231
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ +++ +P + Q +AT+P I + D + R +
Sbjct: 232 DVERILADTPDSRQVALFSATMPSAIRRLSKQYLNDPQEYTVKSEQR------------T 279
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
GD + + NK AL +++E + I+F ++ + ++R
Sbjct: 280 GDNITQDYLMVSHRNKLDALTRILEVTEFDAMIIFVRTKSDTEELAD----------KLR 329
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
F AA N +E T + K+ RL LV TD A+RG+D + HV +D PRD
Sbjct: 330 ARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPRDT 389
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663
YV R+GRT R AG TG+A +FV ++ L + I ER K HP
Sbjct: 390 ESYVHRIGRTGR-AGRTGRAILFVTPRERRLLKNI-ERATKSHP 431
>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
Length = 508
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 192/390 (49%), Gaps = 40/390 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+ + ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 31 FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPML-- 88
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E LQG S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 89 ---EILQG-SRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGESMAEQ 143
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L + G L L + ++DE D + D F ++ ++S
Sbjct: 144 KEVLNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRML-DMGFIPDIEKIVSML 202
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG--MHRISPGLEEFLVDCSGDQE 504
Q LF +AT+ EI +L + F P V P I GL +VD
Sbjct: 203 SPLRQTLFFSATMAPEI-RRLADAFLRNPKEITVSRPSSVASTIETGLA--IVDAK---- 255
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+K+ AL +L+ ++ + IVFCN+ R V+ + K + L
Sbjct: 256 ----------DKRRALRKLLREADMQNAIVFCNR---KRDVDVLCKSLIKHGFSAGAL-- 300
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H L Q R + ++ F + K LVC+D A+RGID G+ HV FD P +YV
Sbjct: 301 HGDLAQSVRFSTLEAFKSGELK----ILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVH 356
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
R+GRT R AG TG A+ + +LAQ I
Sbjct: 357 RIGRTGR-AGRTGHAYSLATPDEEALAQAI 385
>gi|409399588|ref|ZP_11249862.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131306|gb|EKN01017.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 549
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 36/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ +L + ++ + IQA A P V+ G+ + Q+G+GKT + LP++
Sbjct: 36 FASLGLSEPILNALAEKGYVHATPIQAQAIPVVLMGRDVLGVAQTGTGKTAGFTLPML-- 93
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E+ S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 94 ----EILAGSRARARMPRSLILEPTRELALQVAENFVQYGK-NLKLNHALLIGGESMADQ 148
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L +GVDVLIATPGR + L + G L L ++R ++DE D + D F ++ +++
Sbjct: 149 KAVLTKGVDVLIATPGRLIDLFERGGLLLRDVRVLVIDEADRML-DMGFIPDIERIVAML 207
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI +L + F + P +E V + T
Sbjct: 208 PTTRQTLFFSATMAPEI-RRLADAF-----LSNP---------KEITVSRQASVATTITT 252
Query: 510 ETAF---LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
A ++K+ AL +L+ V IVFCN+ R V+ + K + L H
Sbjct: 253 GLALVSEIDKREALRRLLRAEDVQNAIVFCNR---KRDVDILFKSLSKHGFAAGAL--HG 307
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R A +++F K LVC+D A+RGID G+ HV FD P +YV R+
Sbjct: 308 DLPQSVRFATLEKFKAGEIK----ILVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRI 363
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG G A+
Sbjct: 364 GRTGR-AGREGHAYTLA 379
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 203/405 (50%), Gaps = 38/405 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL S +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------SANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML-DMGFLPDLQ 189
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + +
Sbjct: 190 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVRQIVFEV---H 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
ESDK+ A+ QLI + + + IVFCN + ++ +L++ T +
Sbjct: 247 ESDKS---------GAVAQLIRERELKQVIVFCNSKIGASRLARVLEKDGIVATAI---- 293
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 294 -HGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 348
Query: 624 RRVGRTARGAGGTGKAFIFVVG---KQVSLAQRIMERNRKGHPLH 665
R+GRT R AG +G A KQ++ +++++R + PL
Sbjct: 349 HRIGRTGR-AGASGDALSLCSANERKQLADIEKLIKRPLEVEPLE 392
>gi|110637416|ref|YP_677623.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110280097|gb|ABG58283.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
Length = 463
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 205/409 (50%), Gaps = 37/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++ +++ + P++IQ+ A P ++ G I Q+G+GKT AY LP++
Sbjct: 6 NFEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPILM 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+++ + +PR VI PT EL Q+ + L+K R + + GG K
Sbjct: 66 KIKY--------AQGHNPRAVIFGPTRELVMQIEIAMKQLAKY-TDLRIVALYGGIGPKL 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E+LQ+GVD+++ATPGRF+ L E + L ++ +LDE D + D F L+ ++
Sbjct: 117 QKEHLQKGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMM-DMGFMPQLRKMLEV 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+ E +L E F + K+ + P + +P Q+
Sbjct: 176 IPRKRQNLLFSATMS-ERVERLTEEFLEYPMKIEVTP---QATPA-------TLISQKLY 224
Query: 507 KTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRV-RVLPF 564
K P F K L LI K V++ I+F T + ++I K RK T R++
Sbjct: 225 KVPN--FKTKIHLLEYLIRKDESVTRAIIFVR---TKKSADDIYKFIIRKTTNTCRII-- 277
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
HA DQ +R+ M +F K LV TD A+RGID V HV+ FD P +Y+
Sbjct: 278 HANKDQNSRINAMDDFKDGTIK----ILVATDVAARGIDVHEVSHVINFDVPIIYDDYIH 333
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R A TG A F ++ ++I + R P+ ++P+A E+
Sbjct: 334 RIGRTGR-ANHTGVAITFATEAEMYHIEKIEKIIRMQIPVEELPAAVEI 381
>gi|67598831|ref|XP_666241.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium hominis
TU502]
gi|54657199|gb|EAL36013.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium hominis]
Length = 519
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 205/405 (50%), Gaps = 45/405 (11%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
+FS F+ D + ++LK ++IQA A P ++ GK + A ++GSGKTLA+L
Sbjct: 22 YFSDVKFESSNICDQLKKALKEMGMETMTEIQAKAIPRILSGKDVLGAAKTGSGKTLAFL 81
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
+P L E L ++ +G V++++PT EL+ Q+ CR L K +P +V GG
Sbjct: 82 IPAANLLYNVEF--LPRNGTG---VIVISPTRELSLQIYEVCRELCKY-LPQTHGLVMGG 135
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM--------FLIKEGILQLINLRCAILDEVDILFND 435
++T+ E L +GV++L+ATPGR + FL K L+NL ++DE D + +
Sbjct: 136 ANRRTEAEKLSKGVNILVATPGRLLDHLQNTKQFLFK----NLLNL---VIDEADRIL-E 187
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS--PGLE 493
FE + +I P Q +AT ++ + + + +V I+ GLE
Sbjct: 188 IGFEEEMNQIIKLLPKERQTSLFSATQTTKVADLVRLSLKNPVLVESKNTSSIATVSGLE 247
Query: 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD 553
+ V +Q FL L ++K+ K +VF + ++ + E + D
Sbjct: 248 QGYVIAQANQR--------FL----LLYTFLKKNRDKKVMVFFSSCMSTKFHEELFNYVD 295
Query: 554 RKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLF 613
+ + H Q +R+ +F ++ + L+CTD A+RG+D VD +V +
Sbjct: 296 LTCSSI-----HGKKKQTSRMQTYYDFCSAD----KGLLLCTDVAARGLDIPNVDWIVQY 346
Query: 614 DFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
D P DP EY+ RVGRTARGAGGTGKA +F++ ++++ Q + + N
Sbjct: 347 DPPDDPREYIHRVGRTARGAGGTGKALLFLLPEEIAFLQYLRKMN 391
>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 498
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 191/386 (49%), Gaps = 30/386 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++E+++ + P+ IQA A P + G+ + Q+G+GKT ++ LP+I+
Sbjct: 2 TFAELGLSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ + PR +I+APT ELA+Q N + SK G ++ GG
Sbjct: 62 RLSR------GRAKARMPRSLIIAPTRELAAQCAENFETYSK-GQKLSMALLIGGVAFGP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L +G DVLIATPGR + G L + ++ ++DE D + D F L+ + S
Sbjct: 115 QEEILNKGADVLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRML-DMGFIPDLEKIFSL 173
Query: 449 SPVTA--QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+P EI + + D + V + + + ++ +
Sbjct: 174 VPPAPRRQTLFFSATMPKEIQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLT------ 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ + K+ AL Q + + V I+F N+ R V+ + + R P H
Sbjct: 228 ---DNSAKAKRLALRQAMSREGVKNGIIFSNR---KRDVDVVARSLQRHG--FSAAPIHG 279
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R A + +F + FLV +D A+RG+D V HV +D P +YV R+
Sbjct: 280 DLDQSARTATLADFKAGTLR----FLVASDVAARGLDIPDVSHVFNYDMPHHADDYVHRI 335
Query: 627 GRTARGAGGTGKAF-IFVVGKQVSLA 651
GRT R AG +G++ IF G + SLA
Sbjct: 336 GRTGR-AGKSGESVTIFAPGDEKSLA 360
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 179/377 (47%), Gaps = 31/377 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I +
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPMIDK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR +++APT ELA QV S+ +K G ++ GG Q
Sbjct: 64 L------ASGRAKARMPRALVIAPTRELADQVASSFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 VKKLDRGVDVLIATPGRLLDHFERGGLLMTGVQIMVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + +V K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLRDPVRIEASRPATTNENITQLMV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPFHAA 567
+ K+ AL LIEK+ + IVFCN+ V LK FD H
Sbjct: 227 SSDPKAKRLALRALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFD-------AAAIHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R+ + F K LV +D A+RG+D V HV +D P +YV R+G
Sbjct: 280 LDQSQRMKTLAAFRDGSLK----ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVV 644
RT R AG +G A++ V
Sbjct: 336 RTGR-AGRSGIAYMLVT 351
>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821, partial [Collinsella stercoris
DSM 13279]
gi|210160006|gb|EEA90977.1| DEAD/DEAH box helicase, partial [Collinsella stercoris DSM 13279]
Length = 595
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 194/384 (50%), Gaps = 29/384 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ +QA + P ++G+ + A Q+G+GKT A+LLP +
Sbjct: 40 TFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMN 99
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + + + P ++++ PT ELA Q+ CR+++KC S+ V GG
Sbjct: 100 NLPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKC-TGHTSVTVVGGVSYN 158
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + L+ G D+LIATPGR LI +G L ++ +LDE D + D F A++ ++
Sbjct: 159 PQRDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRML-DMGFLPAVRRIVG 217
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ Q L +ATL + + ++ D +V + P + + +E++++ S
Sbjct: 218 YTRDDRQTLLFSATLDEQAVGSITDLVHDPARVEIAP-VTSTADTVEQYVLPVS------ 270
Query: 507 KTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
L K+ALL ++++ S+ IVFC T + + +R R + H
Sbjct: 271 -------LEAKNALLASVLKREGASRAIVFCR---TKHRADACSRRLARAG--ITCAAIH 318
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R +K F R+ E + LV TD +RGID + V +VV FD P DP +Y+ R
Sbjct: 319 GDRSQAQRERALKAF---RAGECDV-LVATDVLARGIDISDVRYVVNFDVPEDPVDYIHR 374
Query: 626 VGRTARGAGGTGKAFIFVVGKQVS 649
+GRT R AG G + FV V+
Sbjct: 375 IGRTGR-AGELGWSLTFVTPDDVA 397
>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 476
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 200/395 (50%), Gaps = 28/395 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P +++G + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + + KS R+++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDQFKKRAMPKSC----RILVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + LI++G ++L ++ +LDE D + D F ++ +++
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRML-DMGFIQPIRKIVALV 178
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P I V V+ P ++P V + D+ K
Sbjct: 179 PKQRQTVLFSATMPDSI------VGLANSVLHTPVRVEVTP------VSSTVDKIDQKVL 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K++ L ++ V + +VF +V +L++ + H
Sbjct: 227 FVDREHKRTLLTDILAGKDVGRALVFTRTKHGANRVVELLEK-----AGIDADAIHGNKS 281
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + +F R K LV TD A+RGID G+ HV+ F+ P +P YV R+GRT
Sbjct: 282 QGARQKALADFRDGRIKA----LVATDIAARGIDVDGITHVINFELPNEPESYVHRIGRT 337
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
AR AG +G A G +V+ + I + R+ P+
Sbjct: 338 AR-AGASGIALSLCDGDEVAYLRDIEKTIRQAIPV 371
>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
Length = 521
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 197/392 (50%), Gaps = 37/392 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + +P+ IQ A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 7 TFADLGLSDEVVSAVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMI- 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR-SM-VVTGGFRQ 386
++ ++ + PR +I+APT ELA+QV N K G R SM ++ GG
Sbjct: 66 -----DILSAGRAKARMPRSLIIAPTRELAAQVSEN---FVKYGQNTRLSMALLIGGVSM 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L GVDVLIATPGR + + G + L +++ ++DE D + D F ++ ++
Sbjct: 118 GDQEAKLDRGVDVLIATPGRLLDHFERGRILLTDVKILVIDEADRML-DMGFIPDVERIV 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q LF +AT+ EI + + K V + + + LV CS
Sbjct: 177 SLLPTIRQTLFFSATMAPEIKRLADKFLMNPKEVSVDAPASAAENVAQHLVRCS------ 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+K+ AL L++ V ++FCN+ + L+R+ + + H
Sbjct: 231 ------VKDKRDALRSLLKSETVDSALIFCNRKRDIGVLHRSLQRYG-----IEAVQLHG 279
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+ Q R + +F ++ EARL ++C+D A+RGID G+ HV FD P +YV R+
Sbjct: 280 DMSQPARTETLAKF---KAGEARL-VICSDVAARGIDIKGLSHVFNFDVPSHAEDYVHRI 335
Query: 627 GRTARGAGGTGKAFIFVV---GKQVSLAQRIM 655
GRT R AG +G+AF K +S +R++
Sbjct: 336 GRTGR-AGLSGRAFTLATPEDSKLLSAVERLI 366
>gi|406981744|gb|EKE03149.1| hypothetical protein ACD_20C00242G0002 [uncultured bacterium]
Length = 634
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/393 (32%), Positives = 190/393 (48%), Gaps = 40/393 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG S ++ ++K F S IQ+ A P ++ GK I Q+G+GKT A+ +PVI++
Sbjct: 25 FEELGISTEILAAVKDMGFEEASPIQSEAIPILLSGKDLIGQAQTGTGKTAAFAIPVIEK 84
Query: 330 L--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +ELQ VIL PT EL QV R L K + GG +
Sbjct: 85 LDPNSKELQA-----------VILCPTRELVIQVSEEFRKLLKYKENLWVTPIYGGQEIE 133
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ GV V+I TPGR M ++ G +++ +++ +LDE D + D F ++ ++
Sbjct: 134 RQLRTLKRGVQVVIGTPGRTMDHMRRGSIKMHSVQTVVLDEADEML-DMGFREDMEIILK 192
Query: 448 SSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P Q + +AT+ +I K +V P V +H +P +E+ + QE
Sbjct: 193 DTPKERQTIMFSATMAKDILELTKQYQVDPAIINVTNKKIH--APKIEQVYFEV---QEK 247
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK L +L++ V +VFCN T +V+ +++ + L H
Sbjct: 248 ---------NKPEVLARLLDIHNVKLALVFCN---TKSQVDQLVENLKTRGYFADAL--H 293
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ Q R M F + LV TD A RGID ++ V +D PRD +Y R
Sbjct: 294 GDMSQNQRDRVMNGFRNGSVE----ILVATDVAGRGIDVNDIEAVFNYDLPRDDEDYTHR 349
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
+GRTAR AG TG AF F+ GKQ+ +RI N
Sbjct: 350 IGRTAR-AGKTGTAFTFITGKQIYSLKRIERSN 381
>gi|338984023|ref|ZP_08633147.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium sp.
PM]
gi|338207051|gb|EGO95064.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium sp.
PM]
Length = 412
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 190/376 (50%), Gaps = 36/376 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++++L+ + +L P+ IQ A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDI 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 81 LSG------SRARARMPRSLILEPTRELALQVAENFVQYGKH-LKLNHALLIGGESMGEQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + + G L L ++R ++DE D + D F ++ ++S
Sbjct: 134 RDVLTRGVDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRML-DMGFIPDIERIVSLL 192
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ + E L
Sbjct: 193 PTMRQTLFFSATMAPEI-RRLADAFLSNPKQITVSRPAT--VATTITEGL---------- 239
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
A +K+ AL +LI V +VFCN+ R V+ + K R + +L H
Sbjct: 240 --SLVATHDKREALRRLIRTEDVQNALVFCNR---KRDVDILCKSLTRHKFSAGML--HG 292
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+ Q R A ++ F ++ E RL LVC+D A+RGID G+ HV FD P +YV R+
Sbjct: 293 DMPQSARFATLERF---KAGEIRL-LVCSDVAARGIDIGGLSHVFNFDVPHHAEDYVHRI 348
Query: 627 GRTARGAGGTGKAFIF 642
GRT R AG G+A
Sbjct: 349 GRTGR-AGMQGRALTL 363
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 207/414 (50%), Gaps = 50/414 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ +G SD ++ L+ F +P++IQ+ A P ++EG+ + Q+G+GKT AY LP ++
Sbjct: 4 SFQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLE 63
Query: 329 R--LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--GGF 384
+ L Q+ +QGL IL PT ELA QV +SL + V R V+T GG
Sbjct: 64 KIDLEQKTVQGL-----------ILTPTRELAVQV---TQSLKEFAVDRRLWVLTVCGGQ 109
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+ +LQ+GV +++ TPGR + L++ G L LR A+LDE D + + F ++
Sbjct: 110 SMERQIRSLQKGVHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLS-MGFIDDVKK 168
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ SP T Q + +AT+P I + LVE F + + + +++P
Sbjct: 169 ILRQSPKTRQTVCFSATMPPAIRD-LVENFLNDPINITIKQPQVTP-------------- 213
Query: 505 SDKTPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
D+ + ++ +K ALL ++E + I+F T ++ N L +
Sbjct: 214 -DRIAQEVYMIPRGWSKTKALLPILEMANPESAIIFVRTKRTASELTNELVEAGQSADE- 271
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+H L+Q R ++ F + K +V TD A+RG+D + HV+ FD P +
Sbjct: 272 ----YHGDLNQNQREKLVRRFKDGKIK----MIVATDIAARGLDVENLSHVINFDLPDNT 323
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
Y+ R+GRT R AG TG A V L ++I R ++ + +PS E+
Sbjct: 324 ESYIHRIGRTGR-AGKTGTAIALVEPSDRRLLRQIERRVKQSLKVSTIPSRTEV 376
>gi|66812114|ref|XP_640236.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
gi|74897113|sp|Q54S03.1|DDX18_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx18; AltName:
Full=DEAD box protein 18
gi|60468220|gb|EAL66230.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
Length = 602
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 203/403 (50%), Gaps = 46/403 (11%)
Query: 269 SFKELGCSDYMIE------------SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
S KELG S IE S++ F + + IQA + P++EGK + A ++GS
Sbjct: 108 SEKELGISKESIEFSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGS 167
Query: 317 GKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
GKTLA+L+P I+ L + + ++ +G V+I++PT ELA Q+ R L K
Sbjct: 168 GKTLAFLIPAIEVLVKSNFK--PRNGTG---VIIISPTRELALQIYGVARELMKYHTQTH 222
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFN 434
+V+ GG +K + E L++GV++L+ATPGR + ++ +G + NL+C I+DE D +
Sbjct: 223 GIVI-GGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITK-NLKCLIIDEADRIL- 279
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR-ISP--G 491
+ FE + +I P T Q + +AT ++ + + V +G R IS G
Sbjct: 280 EVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEG 339
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551
LE+ V C E FL L ++K+ K IVF + + +L
Sbjct: 340 LEQGYVVCPS--------ERRFL----LLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNY 387
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611
D + VL H Q+ R EF + + L+CTD A+RG+D VD ++
Sbjct: 388 ID-----IPVLELHGRQKQQKRTNTFYEFVNAE----KGILICTDVAARGLDIPSVDWII 438
Query: 612 LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+D P DP EY+ RVGRTARG G G+A +F++ K++ + +
Sbjct: 439 QYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYL 481
>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 559
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 199/402 (49%), Gaps = 58/402 (14%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG + + LK Q P+ +Q + P +++GK I ++G+GKTLA++LP++Q
Sbjct: 3 NFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQ 386
++ P+ +I+APT ELA Q+ + L+ G P + + V GG
Sbjct: 63 QI---------DPKRAYPQALIIAPTRELALQITEEAKKLT-AGEPDGIKILAVYGGQDV 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL L+ G ++I TPGR + ++ G L+L ++ +LDE D + + F +++LI
Sbjct: 113 EKQLRKLEGGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLH-MGFLDDVEALI 171
Query: 447 SSSPVTAQYLFVTATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISP----GLEEF 495
+ P Q + +AT+P + N+ V++ V+ G SP +++
Sbjct: 172 HALPYRRQTMLFSATMPAGVKQLAGNYMNQPVDI-----VIKGA-----SPIPLEQIQQV 221
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+V+C +D++ K+ AL +IE+ I+FC + + L +
Sbjct: 222 VVEC-----TDRS-------KQDALRTMIEQYNPFLAIIFCRTKRRASILNDALLAHGYQ 269
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
H L Q R A MK F ++A+L LV TD A+RG+D GV HV +D
Sbjct: 270 SD-----ELHGDLSQAKREAVMKRF-----RDAKLQLLVATDVAARGLDVEGVTHVFNYD 319
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
P D Y+ R+GRT R AGG G A F GK ++ QRI E
Sbjct: 320 MPHDVESYIHRIGRTGR-AGGNGMAITFAAGKDLNDLQRIEE 360
>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 509
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 189/381 (49%), Gaps = 38/381 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +LG S+ + +++R + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 2 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K +PRV++++PT ELA Q+ C +++ + + V GG
Sbjct: 62 STLPR------GKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVF-GGTPYG 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++ G DVLIATPGR L+ +G++ L ++ +LDE D + D F A+ +++
Sbjct: 115 PQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRML-DMGFLPAVTTIVD 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q L +AT+ I L + D VV + +E+F++
Sbjct: 174 ATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMM---------- 223
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFC---NKIVTCRKVENILKRFDRKETRVRVLP 563
P F KK LLQ L+E+ + IVF N+ C E + R E+
Sbjct: 224 -PIANF--KKPELLQALLEEKGSDRVIVFARTKNRTEDC--AEALCDAGYRAES------ 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H+ Q R + F R+ LV TD +RGID VDHV+ FD P P +YV
Sbjct: 273 IHSDKSQGQRKRALDNFRRGRTS----ILVATDVLARGIDVPDVDHVINFDLPDMPEDYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G A FV
Sbjct: 329 HRIGRTGR-AGEQGFAVSFVT 348
>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Stappia aggregata IAM 12614]
gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Stappia aggregata IAM 12614]
Length = 505
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 196/408 (48%), Gaps = 49/408 (12%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS 307
PT P H A +F LG S+ ++ +++ + P+ IQ+ A P V+E +
Sbjct: 9 PTAPPINNHNIRAKRSM----AFNTLGLSEKVLAAVEAAGYKEPTAIQSGAIPQVLERRD 64
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
+ Q+G+GKT ++ LP++ L + ++ + PR +IL PT ELA+QV N
Sbjct: 65 ILGIAQTGTGKTASFTLPMLTLLEK------GRARARMPRTLILEPTRELAAQVEEN--- 115
Query: 368 LSKCGVPFRSMV--VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425
S+ G + + + GG Q + L G DVLIATPGR + + G L L + +
Sbjct: 116 FSRYGTNHKLNIALLIGGVSFSEQDKKLDRGTDVLIATPGRLLDHFERGKLLLQGVEILV 175
Query: 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM 485
+DE D + D F ++ + P T Q LF +AT+P EI +L E F + P
Sbjct: 176 IDEADRML-DMGFIPDIERICKLIPFTRQTLFFSATMPPEI-QRLTETF-----LQNPAR 228
Query: 486 HRISP------GLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNK 538
++P + +FL K ++ K++AL L+E + + IVFCN+
Sbjct: 229 IEVAPTSSTAENVAQFL----------KATDSKDYEKRAALRDLLEGAEDLQNAIVFCNR 278
Query: 539 IVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA 598
R V + + +R E V L H +DQ TR+ + F K LV +D A
Sbjct: 279 ---KRDVTTVYRSLERHEYNVGAL--HGDMDQRTRMMMLDNFRKGTIK----LLVASDVA 329
Query: 599 SRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646
+RG+D V HV FD P + +YV R+GRT R AG G AF V G+
Sbjct: 330 ARGLDIPEVSHVFNFDVPSNAEDYVHRIGRTGR-AGRKGTAFTLVTGE 376
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 190/374 (50%), Gaps = 33/374 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD +++++ ++ + PS IQ A PP++EGK + + Q+G+GKT + LP++Q
Sbjct: 2 SFNSLGLSDALLKAISKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K S P R +IL PT ELA+Q+L+N + S+ + RS V+ GG QK
Sbjct: 62 ILAE------GKHLSHRPIRALILTPTRELAAQILANIKEYSEF-LDLRSTVIFGGVNQK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++G+D+L+ATPGR + L +G++ L + +LDE D + D F ++ ++
Sbjct: 115 PQVAQLRQGIDILVATPGRLIDLQNQGLITLSKVEILVLDEADRML-DMGFLRDIERIMK 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q L +AT +I K+ MG +H+ +E + + D + K
Sbjct: 174 VLPVKRQNLMFSATFSKDIK----------KLAMGI-LHK-PVQVEATPENTTVDAITQK 221
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKV-ENILKRFDRKETRVRVLPFHA 566
A K +++LI + + +VF K+ E+++ ++ H
Sbjct: 222 VYPVAKEKKTELIIKLITEGNWKQILVFTRTKQGANKLTESMI------SAGIQAAAIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F + LV TD A+RG+D + HVV F+ P P +YV R+
Sbjct: 276 NKGQGARTKALAGFKNG----SLTALVATDIAARGLDIPLLPHVVNFELPNIPEDYVHRI 331
Query: 627 GRTARGAGGTGKAF 640
GRT R AG G+A
Sbjct: 332 GRTGR-AGANGEAI 344
>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 508
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 189/381 (49%), Gaps = 38/381 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +LG S+ + +++R + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 2 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K +PRV++++PT ELA Q+ C +++ + + V GG
Sbjct: 62 STLPR------GKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVF-GGTPYG 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++ G DVLIATPGR L+ +G++ L ++ +LDE D + D F A+ +++
Sbjct: 115 PQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRML-DMGFLPAVTTIVD 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q L +AT+ I L + D VV + +E+F++
Sbjct: 174 ATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMM---------- 223
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFC---NKIVTCRKVENILKRFDRKETRVRVLP 563
P F KK LLQ L+E+ + IVF N+ C E + R E+
Sbjct: 224 -PIANF--KKPELLQALLEEKGSDRVIVFARTKNRTEDC--AEALCDAGYRAES------ 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H+ Q R + F R+ LV TD +RGID VDHV+ FD P P +YV
Sbjct: 273 IHSDKSQGQRKRALDNFRRGRTS----ILVATDVLARGIDVPDVDHVINFDLPDMPEDYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G A FV
Sbjct: 329 HRIGRTGR-AGEQGFAVSFVT 348
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 189/375 (50%), Gaps = 29/375 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + PS IQ A P V++GK + + Q+G+GKT + LP+I
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG K R ++L PT ELA+Q+ N SK V +SMV+ GG Q
Sbjct: 62 RLINNPKQGRRK-----IRALVLTPTRELAAQIQENVLEYSKY-VDIKSMVIFGGVNQNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L +G+L L ++ +LDE D + D F ++ ++
Sbjct: 116 QVRTLRQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRML-DMGFIHDIKKVLKM 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +N ++ F ++ P + +P E DQ+S +
Sbjct: 175 VPAKRQNLLFSAT-----FNTDIKKFASS-ILTNPVLVEATP---ENTTAEKVDQKSYRV 225
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
++ K L++ I + + +VF ++ L++ + H
Sbjct: 226 DKS---RKTEMLIKFIREGNWDQVLVFTRTKHGANRLSQKLEK-----DGISSAAIHGNK 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R+ + F + + + LV TD A+RG+D + +V+ ++ P P +YV R+GR
Sbjct: 278 TQNARVKALAGFKSGKVR----VLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G+A V
Sbjct: 334 TGR-AGASGQAISLV 347
>gi|402224487|gb|EJU04549.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 486
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 197/407 (48%), Gaps = 33/407 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY++ ++K Q F P+ IQ A+P + G+ + Q+GSGKT+A+ LP +
Sbjct: 62 TFEEAGFPDYILTTIKAQGFAAPTPIQCQAWPMALSGRDVVAIAQTGSGKTIAFALPAML 121
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P ++LAPT ELA Q+ C R+ V GG +
Sbjct: 122 HINAQPLL----TPGDGPIALVLAPTRELAVQIQQECTKFG-SNSRIRNTAVYGGAPKGQ 176
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +LQ GV+V+IATPGR + +++ G L + ++DE D + D FE ++ ++
Sbjct: 177 QIRDLQRGVEVVIATPGRLIDMLESGKTNLRRVTYLVMDEADRML-DMGFEPQIRKIVGQ 235
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ + D +V +G +P +E+ + CS
Sbjct: 236 IRPDRQTLMFSATWPKEVQRLAQDFLKDFIQVNIGSMDLSANPNIEQIVEVCSD------ 289
Query: 508 TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ LL+ ++K + +K ++F T R ++I K ++ L H
Sbjct: 290 ------FEKRGKLLKHLDKISNENAKVLIFVG---TKRTADDITKYL--RQDGWPALAIH 338
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+Q R + EF SRS L+ TD ASRG+D V +V+ +DFP + +Y+ R
Sbjct: 339 GDKEQRERDWVLSEFKASRSP----ILIATDVASRGLDVKDVGYVINYDFPNNIEDYIHR 394
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
+GRT R AG TG ++ + A+ +++ R +VP E
Sbjct: 395 IGRTGR-AGNTGVSYTYFTTDNAKQARELIKILRDAQ--MNVPPQLE 438
>gi|354581663|ref|ZP_09000566.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353200280|gb|EHB65740.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 524
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/399 (30%), Positives = 194/399 (48%), Gaps = 52/399 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG + + LK Q P+ +Q P ++EGK I ++G+GKTLA++LP++Q
Sbjct: 3 NFQQLGIDEQRVRKLKEQGIAVPTPVQQETIPLLLEGKDVIARARTGTGKTLAFMLPILQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQ 386
+ P+ +I+APT ELA Q+ R L+ G P + + V GG
Sbjct: 63 HI---------DPNRPFPQALIIAPTRELALQITEEARKLT-AGEPDGIKILAVYGGQDV 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL L+ G ++I TPGR + ++ G L+L ++ +LDE D + + F +++LI
Sbjct: 113 EKQLRKLEGGRHLIIGTPGRLLDHLRRGTLELGGVKMLVLDEADQMLH-MGFLAEVEALI 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISP----GLEEFLVDCS 500
+ P Q + +AT+P + P+ V+ G SP +++ +V+C
Sbjct: 172 DALPYRRQTMLFSATMPAGVKQLAARYMNKPEDIVIKGA-----SPIPLEQIKQVVVEC- 225
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENIL--KRFDRKETR 558
+D++ K+ AL +IE+ I+FC + L ++ E
Sbjct: 226 ----TDRS-------KQDALRAMIERYRPFLAIIFCRTKRRASALNEALLAAGYESDE-- 272
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPR 617
H L Q R A MK F +EA+L LV TD A+RG+D GV HV +D P
Sbjct: 273 -----LHGDLSQAKREAVMKRF-----REAKLQLLVATDVAARGLDVEGVTHVFNYDMPH 322
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
D Y+ R+GRT R AGG+G A F+ K S RI E
Sbjct: 323 DVESYIHRIGRTGR-AGGSGMAVTFMAAKDRSDLARIEE 360
>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
DSM 5305]
Length = 475
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 186/375 (49%), Gaps = 30/375 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +L + ++K QN+ P+ IQA P ++ G+ + + Q+G+GKT A+ LP++
Sbjct: 3 SFSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + P V++L PT ELA QV + + + + R ++ GG Q
Sbjct: 63 YLGRQN----RRPIPNEPTVLVLVPTRELAIQVGDSFATYGRH-LRVRHALIYGGVNQFR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GV +L+ATPGR + L+ +G + L L +DE D + D F L+ +I
Sbjct: 118 QVRDLNRGVHILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMM-DMGFLPDLKKIIRE 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +ATLP +I E+ D V + P + + +E+ L+ DQ+S
Sbjct: 177 IPQERQSLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVE-AIEQSLIYV--DQQS-- 231
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KK LL ++ + + +T+VF ++E L++ + V + H
Sbjct: 232 --------KKDLLLDILNEEGIGQTVVFTKTKFCANRLEEQLRK-----SGVSAIAIHGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F + K LV TD A+RGID GV HV+ F+ P +P YV R+G
Sbjct: 279 KSQNARQKALLAFRNEKVK----VLVATDVAARGIDVDGVTHVINFELPHEPESYVHRIG 334
Query: 628 RTARGAGGTGKAFIF 642
RT R AG +G A F
Sbjct: 335 RTGR-AGASGIAISF 348
>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429760012|ref|ZP_19292504.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429178724|gb|EKY19996.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
Length = 432
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 188/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRIHTDVHQ---------EQVLIIAPTRELIKQISDEAKVLGAV-LDVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL+ L V++ TPGR + K G L L ++R +LDE D + + F +++LI
Sbjct: 112 SQLQQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + + DK
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE---DK 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
TP L+++I++ IVFCNK + I ++ + + H
Sbjct: 228 TPR---------LIKMIQEDNPYLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D P D Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F S +RI
Sbjct: 330 RTGR-AGNSGIAVTFATPADESWLRRI 355
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 190/388 (48%), Gaps = 33/388 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + +PS IQ A P ++EGK + + Q+G+GKT + LPV+Q
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K P R ++L PT ELA+QV N R SK V +S VV GG +
Sbjct: 62 YLSE------TKHPKYRPIRALVLTPTRELAAQVHDNVREYSKY-VNIKSAVVFGGVKAA 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q+ L+ GVD+L+ATPGR + L + + + ILDE D + D F + +IS
Sbjct: 115 SQIATLKRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRML-DMGFVRDINKIIS 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI + G+ + +E + + + S K
Sbjct: 174 YMPAKRQNLMFSATFSKEIKK------------LASGILKNPVEVETAPQNSTAKKVSHK 221
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ K ++LI+ + ++ ++F K R +N++K +++ H
Sbjct: 222 VYQIDKKKKTEFTIKLIKDNNWNQVLIFTRTKHGANRLTQNLIK------SKISAAAIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F + K LV TD A+RG+D + +V+ ++ P P +YV R+
Sbjct: 276 NKSQGARTKALKNFKDNTIK----VLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG G+A V ++ + I
Sbjct: 332 GRTGR-AGAKGEAISLVCSEETEYQKEI 358
>gi|451979881|ref|ZP_21928289.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
gi|451762901|emb|CCQ89503.1| ATP-dependent RNA helicase rhlE [Nitrospina gracilis 3/211]
Length = 436
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 205/414 (49%), Gaps = 40/414 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S + F L D ++ SL+ + + P+ IQ+ + P +++G+ + Q+G+GKT A+ LP
Sbjct: 9 SAEGFVSLNLIDPILRSLEEEQYQTPTPIQSESIPHLLQGRDLLGCAQTGTGKTAAFALP 68
Query: 326 VIQRLRQEELQGLSKSTSG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
++QRL + S + G R +ILAPT ELA Q+ + R + + +V GG
Sbjct: 69 LLQRLAE------SNTVPGPKGARALILAPTRELAVQIEESFRVYGRH-LKLSRALVYGG 121
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q+ L+ GVDVL+ATPGR + L+++ L+L + +LDE D + D F ++
Sbjct: 122 VKTFHQIRALKRGVDVLVATPGRLLDLMEQRALRLDKVEIFVLDEADRML-DMGFLPDVR 180
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ S+ P Q + +ATLP E+ +L+ F + P +SP +G
Sbjct: 181 RIHSALPQKRQTMLFSATLPQEV-RRLISTF-----LHDPVHVSVSPP------STTGKN 228
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ K NKK+ L L+ + + + +VF T + KR + +TR+R
Sbjct: 229 IAQKILFVDKENKKALLESLLGDAQIERVLVFTR---TKHGANQVAKRLN--QTRIRAEA 283
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q RL +++F + +++ LV TD +RG+D G+ HV+ ++ P++ YV
Sbjct: 284 IHGNKSQPARLQALEKFRSGKTR----VLVATDIVARGLDVDGITHVINYELPKEAESYV 339
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG-------HPLHDVPSA 670
R+GRTAR AG TG A F + RI ER K HP H A
Sbjct: 340 HRIGRTAR-AGATGIALSFCDAGERPYLSRI-EREIKSTVDVDTDHPYHSASVA 391
>gi|401679589|ref|ZP_10811516.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219523|gb|EJO50391.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 432
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 188/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRIHTDVHQ---------EQVLIIAPTRELIKQISDEAKVLGAV-LDVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL+ L V++ TPGR + K G L L ++R +LDE D + + F +++LI
Sbjct: 112 SQLQQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + + DK
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE---DK 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
TP L+++I++ IVFCNK + I ++ + + H
Sbjct: 228 TPR---------LIKMIQEDNPYLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D P D Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F S +RI
Sbjct: 330 RTGR-AGNSGIAVTFATPADESWLRRI 355
>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041656|ref|YP_005480400.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384050171|ref|YP_005477234.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384053281|ref|YP_005486375.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384056513|ref|YP_005489180.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384059154|ref|YP_005498282.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384062448|ref|YP_005483090.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384118524|ref|YP_005501148.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848381|ref|ZP_16281369.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|421852361|ref|ZP_16285050.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|371460742|dbj|GAB26572.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371479441|dbj|GAB30253.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 445
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 201/417 (48%), Gaps = 43/417 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++L Q + P+ IQ + P +++G+ + Q+G+GKT ++ LP+++
Sbjct: 4 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +T PRV++LAPT EL +Q+ + ++ ++ + F VV GG Q Q
Sbjct: 64 L----IKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARH-MKFTQAVVFGGVGQGRQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E ++ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 119 VEAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRML-DMGFVRDIRRIMTFV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P I + + D +V + P + RI + V+ +GD
Sbjct: 178 PEQRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAV--MFVNGAGD--- 232
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ ALL ++E VS+ +VF KV L + V H
Sbjct: 233 ----------KRDALLNMVESPKVSRAVVFTLMKHEANKVAEFLNK-----NNVVAEAIH 277
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R MK F + K LV TD A+RGID V HV +D P P YV R
Sbjct: 278 GNKSQGARERAMKGFRSGSVK----VLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHR 333
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN-------RKGHPLHDVPSAFELMR 675
+GRTAR AG G A F +Q + + I ER + HP H + MR
Sbjct: 334 IGRTAR-AGRDGWAVSFCDAEQRAWLRDI-ERTIGKTVPVVRDHPWHSAEAEASTMR 388
>gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 572
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 201/435 (46%), Gaps = 36/435 (8%)
Query: 251 CPKQRHKYSADGDFFS----RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
C + +D D F SF+ + +LK + P+ QA ++P + G+
Sbjct: 125 CSTHKIAIKSDDDSFDCPVPMSSFESTPFGGPIRGALKAAGYPAPTPTQAQSWPIALSGR 184
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
I ++GSGKTL +LLP L G K G P +V+LAPT ELA Q+
Sbjct: 185 DIISVARTGSGKTLGFLLPAFHALLNRP--GGCKPRMGGPYIVVLAPTRELACQINEEAT 242
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426
K RS V GG + Q++ +Q GV V+IATPGR +++ G + + N+ L
Sbjct: 243 KFGKA-AGIRSTTVYGGSPKYPQIKAIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLAL 301
Query: 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGP 483
DE D + D FE ++++I + P Q LF TAT P E+ +L F P V
Sbjct: 302 DEADRML-DMGFEPQIRTIIDAMPAKRQTLFFTATWPKEV-QRLARDFVTNPVHITVGDA 359
Query: 484 GMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVS---KTIVFCNKIV 540
G + + + + + DK E L +L E P + KTI+F +K
Sbjct: 360 GKLNANKSITQHIHIVDERDKGDKLWEL--------LTKLHENPPKADHGKTIIFSSKKR 411
Query: 541 TCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASR 600
C K+ +DR V H +Q R M ++ RS E R+ LV TD A+R
Sbjct: 412 NCDKLAQAA--WDRG---FAVDSLHGDREQWERTKVMDQY---RSGEVRM-LVATDVAAR 462
Query: 601 GIDFAGVDHVVLFDFPRDPSE-YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNR 659
G+D + +V+ +DFP D E Y+ R+GRTARG +G AF F A +++ R
Sbjct: 463 GLDVKDISYVINYDFPVDGVENYIHRIGRTARG-NASGDAFTFFTSSDAKFANKLVGVLR 521
Query: 660 KGHPLHDVPSAFELM 674
+ DVP+ + M
Sbjct: 522 GAN--QDVPAELQKM 534
>gi|374292975|ref|YP_005040010.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424914|emb|CBS87794.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 506
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 204/413 (49%), Gaps = 52/413 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++ ++ + + + IQA A P ++ G+ + Q+G+GKT A+ LP++QR
Sbjct: 4 FSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + +KS PR +IL PT ELA Q+ + + + +P R V+ GG Q Q
Sbjct: 64 LFQNKKRVAAKS----PRTLILTPTRELALQIGDSFTTYGRH-LPIRRTVIHGGVGQSPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + G +VLIATPGR + L+ + ++L + +LDE D + D F ++ +++
Sbjct: 119 VAAIARGTEVLIATPGRLLDLMAQNHVRLDQIEVFVLDEADRML-DMGFIRDVRKVVAVL 177
Query: 450 PVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
P Q L +AT+P V++ N + +EV P V RI+ + V+ S
Sbjct: 178 PKERQTLLFSATMPDAVVDLANSILTDAERIEVTPQSTTV-----ERINQRV--LFVERS 230
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+K+ L L+E S +++TIVF ++ + LK+ +
Sbjct: 231 --------------DKRRLLADLLEDSAMARTIVFARTKHGADRIADHLKKAG-----IA 271
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ ++ F R+ E R LV TD A+RGID G+ HV+ FD P +P
Sbjct: 272 ADAIHGDKSQSARVRALESF---RAGELRA-LVATDIAARGIDIDGISHVINFDLPNEPE 327
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLHDV 667
YV R+GRTAR AG G A F ++V + I + R+ HP H V
Sbjct: 328 SYVHRIGRTAR-AGTDGSAVSFCDHEEVGYLKDIEKTIRQPIPADTDHPYHAV 379
>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
Length = 432
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 188/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRIHTDVHQ---------EQVLIIAPTRELIKQISDEAKVLGAV-LDVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL+ L V++ TPGR + K G L L ++R +LDE D + + F +++LI
Sbjct: 112 SQLQQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + + DK
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE---DK 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
TP L+++I++ IVFCNK + I ++ + + H
Sbjct: 228 TPR---------LIKMIQEDNPYLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D P D Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F S +RI
Sbjct: 330 RTGR-AGNSGIAVTFATPADESWLRRI 355
>gi|420241874|ref|ZP_14745969.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
gi|398069204|gb|EJL60573.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
Length = 579
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/388 (32%), Positives = 196/388 (50%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ +L + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 NFHELGLTKQLVATLFALGYETPTPIQAQAIPQLLEGRDMIGLAQTGTGKTAAFGLPLIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E+ + +++T R +ILAPT EL +Q+ ++ + + P + V GG
Sbjct: 63 MLLKEQKRPDNRTT----RTLILAPTRELVNQIAASLKGYVRN-TPLKINAVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L +R +LDE D + D F L+ +
Sbjct: 118 QQMQLEKGTDILVATPGRLLDLISRRAIGLTTVRYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + + D +V V PG + + +E+F+ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLASDFLKDPVQVSVTPPG--KAADKVEQFVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS +E++P + +VF K+ L+ +V H
Sbjct: 233 KTD----LLKKS-----LEENPDGRAMVFLRTKHGAEKLSKHLEHIG-----FKVASIHG 278
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+
Sbjct: 279 NKSQGQRERALKSF---RDNEIRV-LVATDVAARGIDIPGVTHVFNYDLPEVPDAYVHRI 334
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L + I
Sbjct: 335 GRTAR-AGRDGIAIAFCATDETGLLRDI 361
>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum So ce56]
gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum So ce56]
Length = 478
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 37/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++ +++ + + P+ IQ A PP++EG + Q+G+GKT A+ LP++QR
Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q G RV++L PT ELA+QV + + K + R+ VV GG Q+ Q
Sbjct: 63 LAQS-----GGPRQGGLRVLVLTPTRELAAQVAESFTTYGK-NLGLRTAVVFGGVGQRPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GVDVL+ATPGR + L +GI L +LDE D + D F ++ +++
Sbjct: 117 MEALRRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRML-DMGFIHDIRRVLAML 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P +I + SP E + + D+
Sbjct: 176 PERRQTLLFSATMPPDILKLANSILR-------------SPVRVEVARIATTAENIDQRV 222
Query: 510 ETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ K A+L+ + K P + + IVF +V L R R+ + H
Sbjct: 223 VFVERSDKRAMLEHVLKDPALRRAIVFTRTKHGANRVVQQLSR-----ARIEAVAIHGNK 277
Query: 569 DQETR---LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R LA+ K+ TTS LV TD A+RGID + HV+ +D P P YV R
Sbjct: 278 SQGARERALASFKQGTTS-------VLVATDIAARGIDIDDISHVINYDLPNIPESYVHR 330
Query: 626 VGRTARGAGGTGKAFIF 642
+GRTAR AG +G A F
Sbjct: 331 IGRTAR-AGASGVALSF 346
>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
Length = 579
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 192/408 (47%), Gaps = 51/408 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S +++++R F P+ IQA A PP + G+ I +G+GKT AYLLP+++
Sbjct: 4 SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC------RSLSKCGVPFRSMVVTG 382
RL E P ++LAPT EL Q+ R L++ VVTG
Sbjct: 64 RLAGER----------GPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQA-------VVTG 106
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+E L++ +++ATPGR L+KEG+ L +R +LDE D + F L
Sbjct: 107 GTDMGAQVEALRQRPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTL-EMGFMPEL 165
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEE-FLVDCS 500
Q ++++ P Q L +ATL + EV +V + P + ++ + V+ S
Sbjct: 166 QQILAALPRERQTLLFSATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEAS 225
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
K LL L+ K +S +VF KV+ +LKR K +
Sbjct: 226 --------------EKYPLLLSLLAKDQLS-VLVFTRTRERAEKVQEVLKRAGHKTAAI- 269
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
HA Q R ++ F + + LV TD ASRG+D + HV+ FD P P
Sbjct: 270 ----HADRTQGQRRQALEGFRRGQYR----CLVATDIASRGLDVEDIGHVINFDLPHAPE 321
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
+YV R+GRTAR AG +G+A FV + + I R P +VP
Sbjct: 322 DYVHRIGRTAR-AGASGRASTFVTSRDEETVRAIERIVRMSLPRAEVP 368
>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 587
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 194/410 (47%), Gaps = 38/410 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+++ ++ L+ F +P+ IQ A P ++EG + Q+G+GKT A+ LP +
Sbjct: 9 SFQDMALPSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPALA 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + Q +++++ PT ELA QV S SK V GG
Sbjct: 69 SIEANQRQ---------TQMLVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSL 445
Q++ L+ G V++ TPGR + L+ + +L+L LR A+LDE D + N ED E LQS+
Sbjct: 120 QIQALKRGASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSV 179
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P TAQ +AT+P I KL + + + P RI+P V+ +
Sbjct: 180 ----PDTAQRALFSATMPTAI-RKLAKTY-----LTDPVNIRIAP------VEQAKANIR 223
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ + + K +AL +L+E + + +VF V +L+R R P
Sbjct: 224 QRAWKVMGMTKMTALTRLLEVTEYQRALVFVRTRQDTMDVAELLQR-----QGFRAAPLS 278
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L+Q R + + + K LV TD +RG+D + HV+ +D P D YV R
Sbjct: 279 GDLNQAQREQTVTQLRSGHIK----VLVATDVVARGLDVPEITHVINYDLPSDTESYVHR 334
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELMR 675
+GRT R AG +G+A +F GK+ L + + DVPSA EL R
Sbjct: 335 IGRTGR-AGRSGEAILFYRGKERHLLRHYEKLTNGSIEYFDVPSAEELSR 383
>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 461
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 191/386 (49%), Gaps = 49/386 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L + + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I R
Sbjct: 4 FTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
LR+ E Q KS R+++LAPT ELA Q+ + + G+ +S+V GG
Sbjct: 64 LREAENQTPFKSC----RMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIV--GGTSVNK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L G D+L+ATPGR + LI + L + +LDE D + D F AL+ +
Sbjct: 118 DRNKLHRGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQML-DLGFIHALRKINEL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSGD 502
+P T Q LF +AT+P I + LV + C+ P ++P +E+FL D
Sbjct: 177 TPKTRQTLFFSATMPKAIKD-LVSQY--CR---NPAQVSVTPESTTAERIEQFLFMVQQD 230
Query: 503 QESDKTPETAFLNKKSALLQLI----EKSP--VSKTIVFCNKIVTCRKVENILKRFDRKE 556
+ K +LL+LI + P + + +VF C +V L +
Sbjct: 231 E-------------KQSLLELILSGRHEIPGKLERVLVFARTKHGCDRVVKKLAQVG--- 274
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ H Q R + EF +++ LV TD A+RGID GV HV+ ++ P
Sbjct: 275 --IPANAIHGNKSQPQRERALDEFKRAKTP----VLVATDVAARGIDIPGVSHVINYELP 328
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIF 642
P +YV R+GRTAR AG G A F
Sbjct: 329 NVPEQYVHRIGRTAR-AGADGIAIAF 353
>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 454
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 190/388 (48%), Gaps = 32/388 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ + P+ IQ A P V+ G I Q+G+GKT A++LP +Q
Sbjct: 2 TFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL S PRV++L PT ELA Q + RS + G R + GG +
Sbjct: 62 RLSTP-----SSVPGKGPRVLVLTPTRELAGQCIDAARSYGR-GARLRCGSILGGMPYRE 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L VD+++ATPGR + ++ G + L L +LDE D + D F ++ ++S+
Sbjct: 116 QLRLLSAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRML-DMGFSEDMEKIVSA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q L TAT+ + KL E K++ P RI E V S + ++
Sbjct: 175 APQERQTLMFTATMGTTVL-KLAE-----KMLRNP--QRI-----ELAVRTSSHELIEQR 221
Query: 509 PETA--FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
A +KK L L+ +++ I+F T R + + + R+ P H
Sbjct: 222 LHVADNLGHKKELLRHLVSDKGLTRAIIFS---ATKRDADELARELSREGHPA--APLHG 276
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
++Q A K R RL LV TD A+RG+D G+ HV+ FD PR +YV R+
Sbjct: 277 DMNQ---FARNKTIERMRKGAIRL-LVATDVAARGLDVNGISHVINFDLPRFAEDYVHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG +G A FV ++S +RI
Sbjct: 333 GRTGR-AGASGIAISFVSPSELSYLERI 359
>gi|355621610|ref|ZP_09046211.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
gi|354823417|gb|EHF07748.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
Length = 477
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 201/403 (49%), Gaps = 37/403 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S ++++L+ + ++ PS IQ A P V+ G+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
L + + SK R +IL PT ELA Q+ N + S+ V R V+ GG
Sbjct: 62 NLMKPSEKKYSKRVI---RSLILTPTRELALQIAENFKEYGSRTSV--RCAVIFGGVSAN 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+E L+ G+D+L+ATPGR L+ +G + L ++ +LDE D + D F ++ +IS
Sbjct: 117 PQIEELRRGIDILVATPGRLNDLVGQGFVDLAHVEIFVLDEADRML-DMGFIHDVRKIIS 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCS---GDQ 503
PV Q L +AT+P EI + D K++ P ++P ++D S D+
Sbjct: 176 LLPVRKQTLLFSATMPAEI-----QALTD-KLLHNPARVEVTPVSSTVDIIDASLYYVDK 229
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E NK+S L+ L+ ++ T+VF +V L + R+
Sbjct: 230 E----------NKRSLLVYLLNHEDITSTLVFTRTKHGADRVAKFLVK-----NRISAAA 274
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F +S E ++ LV TD A+RGID + V+ FD P P YV
Sbjct: 275 IHGDKSQGARQTALSHF---KSGEIQV-LVATDIAARGIDIEELSCVINFDLPNIPETYV 330
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
R+GRT R AG G+A F ++ + + I + K P+ D
Sbjct: 331 HRIGRTGR-AGLGGRAISFSDIEEKAYVKDIEKLTGKAIPVVD 372
>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
Length = 552
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 200/407 (49%), Gaps = 30/407 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP++
Sbjct: 4 FSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + SK + ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYSKH-LKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + +
Sbjct: 117 EQIIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRML-DMGFIPDIERIFGLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + V S +E+ +V G + +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREAS 235
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K++ L +LI E + I+FCN+ V LK++ P H
Sbjct: 236 E-----KRNVLRKLIDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYG-----YDAAPIHGD 285
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R ++ F R+ + R FLV +D A+RG+D V HV FD P +YV R+G
Sbjct: 286 LDQSQRTRTLESF---RAGDLR-FLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIG 341
Query: 628 RTARGAGGTGKAFIFVVG---KQVSLAQRIMERN--RKGHPLHDVPS 669
RT R AG GKA + K ++++++ R +PL PS
Sbjct: 342 RTGR-AGRDGKAMMICSARDEKNFDAIEKLIQKEIPRIDNPLGTAPS 387
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV+VLIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 263 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 308
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 309 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 364
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 365 HRIGRTGR-AGATGDAL 380
>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
Length = 399
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 184/375 (49%), Gaps = 29/375 (7%)
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+E+L+ + + PS IQA A P V++G+ + A Q+G+GKT + LPV++RLR + G +
Sbjct: 1 MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRA 60
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
+ R ++L PT ELA+QVL N ++ S+ +P RS VV GG + Q++ L+ GVD+
Sbjct: 61 QI-----RALVLTPTRELAAQVLENVKAYSRH-LPLRSDVVFGGVKANPQIDRLRGGVDL 114
Query: 400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
L+ATPGR + L ++G L+ L C +LDE D + D F ++ LI P Q L +
Sbjct: 115 LVATPGRLLDLHQQGALRFDQLECLVLDEADRML-DMGFIHDIRRLIRLMPAKRQTLLFS 173
Query: 460 ATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
AT I + D + ++ + +E+ + C ++SD
Sbjct: 174 ATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSD------------L 221
Query: 520 LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKE 579
L LI + +VF T + R +++ + H Q R ++
Sbjct: 222 LSHLIRTGEWRQVLVFSR---TKHGANRVADRLNKEG--LAAAAIHGNKSQGARTRALQG 276
Query: 580 FTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639
F + LV TD A+RGID + HVV D P +YV R+GRT R AG TG A
Sbjct: 277 FKQGSVR----VLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGR-AGETGHA 331
Query: 640 FIFVVGKQVSLAQRI 654
V ++ L + I
Sbjct: 332 VSLVAAEEALLLKAI 346
>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
proteobacterium ANT8C10]
Length = 635
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 193/379 (50%), Gaps = 37/379 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKELG S+ +++SL+ +PS+IQ A P ++ GK+ + A Q+G+GKT +++LP+++
Sbjct: 2 SFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPMLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ +K S + ++L PT ELA+QV + S K S V GG +
Sbjct: 62 MLHEQ-----AKPYSKNVHALVLTPTRELAAQVRESVHSYGKL-TNITSTAVFGGAKIFP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+L+ATPGR + L+ + ++L ++ +LDE D + D F ++ +I+
Sbjct: 116 QKAKLKKGVDILVATPGRLLDLVNQKAVKLDQVQILVLDEADHML-DMGFIHDIKKIIAM 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P T Q L +AT EI KL + D GL E S + K
Sbjct: 175 TPPTRQNLLFSATFSPEI-KKLAQSLGD--------------GLVEISAQ-SPNTTVSKI 218
Query: 509 PETAFL---NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ + NKKS LL +IE+ + +VF C K+ + L +
Sbjct: 219 KQIVYHVDKNKKSDLLAHMIEEEQWDQALVFSKTKHGCEKIADYL-----NAAGIETGTI 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R ++EF + K R+ LV TD A+RGID + + VV FD P P++Y+
Sbjct: 274 HGDKTQGARTKALREF---KGKFVRV-LVATDVAARGIDISNLPFVVNFDMPTYPNDYIH 329
Query: 625 RVGRTARGAGGTGKAFIFV 643
R+GRT R AG G A +
Sbjct: 330 RIGRTGR-AGQEGTAISLM 347
>gi|357620336|gb|EHJ72566.1| DEAD box polypeptide 5 [Danaus plexippus]
Length = 592
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 187/378 (49%), Gaps = 28/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E DY+++S+ + P+ IQA +P + GK+ + Q+GSGKTLAY+LP I
Sbjct: 155 QHFEEGNFPDYVMKSISSMGYNEPTPIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAI 214
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ ++ P ++LAPT ELA Q+ R+ V GG ++
Sbjct: 215 VHINNQQ----PVRRGDGPVALVLAPTRELAQQIQQVATDFGNAAY-VRNTCVFGGAPKR 269
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV+++IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 270 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIE 328
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESD 506
Q L +AT P E+ KL E + V + G ++S +VD + E +
Sbjct: 329 QIRPDRQTLMWSATWPKEV-RKLAEDYLGDYVQINIGSMQLSANHNILQIVDVCQEHEKE 387
Query: 507 KTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
NK + LLQ I +S P SKTI+F + T RKVENI + R +
Sbjct: 388 --------NKLNTLLQEIGQSQDPGSKTIIF---VETKRKVENITRNIRRYGWPAVCM-- 434
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q+ R + +F R+ LV TD A+RG+D G+ +V+ FD+P +Y+
Sbjct: 435 HGDKTQQERDDVLYQFKQGRAN----ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 490
Query: 625 RVGRTARG-AGGTGKAFI 641
R+GRT R + GT AF
Sbjct: 491 RIGRTGRSKSKGTSYAFF 508
>gi|225434327|ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [Vitis vinifera]
gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/397 (30%), Positives = 188/397 (47%), Gaps = 38/397 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++G +++ + + RP+ IQA A P + G+ + ++GSGKT A+ +P+I
Sbjct: 123 ESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMI 182
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q L Q ++ P ++LAPT ELA Q+ ++ S+ FR+ +V GG
Sbjct: 183 QHCLAQPPVR-----RGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNI 237
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ GV++++ATPGRF+ ++EG L + +LDE D + D FE ++ ++
Sbjct: 238 SEQRSELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRML-DMGFEPQIREVM 296
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q L +AT+P+EI L + + + V + G V C S
Sbjct: 297 QNLPQKHQTLLFSATMPMEI-ETLAQEYLNNPVQVKVGK-----------VSCPTANVSQ 344
Query: 507 KTPETAFLNKKSALLQLIEKS---------PVSKTIVFCNKIVTCRKVENILKRFDRKET 557
+ + K LL L+ + P TIVF + C +V L
Sbjct: 345 ILEKVSESEKIDGLLALLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEAL-----VAQ 399
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+R + H Q R A +++F + LV TD ASRG+D GV HV+ D P+
Sbjct: 400 GLRAVALHGGRSQAEREAALRDFRNGATN----ILVATDVASRGLDVTGVAHVINLDLPK 455
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
YV R+GRT R AG TG+A F + V L I
Sbjct: 456 AMENYVHRIGRTGR-AGSTGQATSFYTDRDVFLVAHI 491
>gi|414343394|ref|YP_006984915.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028729|gb|AFW01984.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 572
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 187/374 (50%), Gaps = 36/374 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +++ + P+ IQA A P V++G + Q+G+GKT ++ LP++++
Sbjct: 66 FADLGLAEPIMRAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLEK 125
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 126 LSG------SRARARMPRSLILEPTRELALQVADNFKLYGKY-LRLTHALLIGGESMAEQ 178
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L G + L ++DE D + D F ++ ++S
Sbjct: 179 REVLNRGVDVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRML-DMGFIPDIEKIVSLL 237
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ +EE L+ D+
Sbjct: 238 PRNRQTLFFSATMAPEI-RRLADAFLSNPVQITVSRPS--SVATTIEEGLIVVEEDE--- 291
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K+ AL +L+ V IVFCN+ ++ ++L+R+ K H
Sbjct: 292 ---------KRRALRKLLRSQDVQSAIVFCNR----KRDVDMLQRYLTKHG-FAAGHLHG 337
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R + + F + K LVC+D A+RGID G+ HV FD P + +YV R+
Sbjct: 338 DLAQSLRFSTLDSFKSGELK----ILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRI 393
Query: 627 GRTARGAGGTGKAF 640
GRT R AG G AF
Sbjct: 394 GRTGR-AGKHGHAF 406
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 191/402 (47%), Gaps = 29/402 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +++++++ F P+ IQ A P + G+ + + +G+GKT A++LP +Q
Sbjct: 9 SFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQ 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + PRV++L PT ELASQVL + R+LSK G ++ + GG +
Sbjct: 69 RI----ATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGR-IQTGTILGGMPYRQ 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QLE L+ VD+++ATPGR M ++ G L L + +LDE D + D F A++ + ++
Sbjct: 124 QLEMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRML-DMGFREAVEFIAAA 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L TATL + D + G ++ +E+ + G
Sbjct: 183 CPAERQTLLFTATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADG------- 235
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L K LL+ L+ K IVF + ++ + L E + +P H
Sbjct: 236 -----LEHKHRLLETLLGGEEFGKGIVFIATKLDADRLADTL-----SEKGHKAMPLHGD 285
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ R +V TD A+RGID A + HV+ FD P+ +YV R+G
Sbjct: 286 MQQRDRNRVVQWLRDGRIN----VIVATDVAARGIDIADLTHVINFDLPKQAEDYVHRIG 341
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
RT R AG +G ++ + + I K +H +P
Sbjct: 342 RTGR-AGASGVSYSLFTRMEWRQVRAIEAYTNKAADMHVLPG 382
>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 659
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 185/378 (48%), Gaps = 33/378 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + + +L + RPS IQA A P +++G+ I +G+GKT A+ LP++QR
Sbjct: 92 FADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQR 151
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L QE S +P ++LAPT ELA QV K G+ R + V GG Q
Sbjct: 152 LAQER----RGSRGTAPLGLVLAPTRELAMQVTEAIARYGK-GLRARVLAVYGGAPIGPQ 206
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L+ GVDV++ATPGR + LI G L L L +LDE D + D F +++++ ++
Sbjct: 207 LGALKRGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEML-DMGFVEDIETILQAT 265
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q + +AT+P + +EV + P L + + E+ +
Sbjct: 266 PDTRQAVLFSATMP-----RRIEVLARTYLT--------DPVLVRIQREEVPEGEAPRVR 312
Query: 510 ETAFLNKKS----ALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+TA++ +S AL +++E + IVFC T V+ + + + R L H
Sbjct: 313 QTAYMVPRSHTTAALGRILELERPTAAIVFCR---TRADVDAVTEALTGRGLRAEAL--H 367
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQE R + R+ LV TD A+RG+D + HVV D P+ P YV R
Sbjct: 368 GGMDQEHRTRVVDRLRNGRTD----LLVATDVAARGLDIDQLTHVVNHDVPKSPESYVHR 423
Query: 626 VGRTARGAGGTGKAFIFV 643
+GR R AG G A V
Sbjct: 424 IGRVGR-AGREGVAITLV 440
>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
ATCC 10500]
gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
ATCC 10500]
Length = 538
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 199/403 (49%), Gaps = 44/403 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L + ++++SL RP+ IQ P +++GK CI ++GSGKT+A+ +P++Q
Sbjct: 109 TFANLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILQGKDCIGGSRTGSGKTIAFAVPILQ 168
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + V+L PT ELA Q+ +++S + +++TGG +
Sbjct: 169 KWAEDPFGIFA---------VVLTPTRELALQIFEQFKAIS-APQSLKPVLITGGTDMRP 218
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + V+IATPGR I+ + I+ L +R ++DE D L D
Sbjct: 219 QAIALSQRPHVIIATPGRLADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDV 278
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL-V 497
E L +L SS Q L TAT+ E+ + ++ P + P +H G E +
Sbjct: 279 ETCLSALPPSS--ERQTLLFTATVTPEV--RALKSVP--RPANRPPIHVTEIGTENIAPI 332
Query: 498 DCSGDQESDKTPET---AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
+ Q + P T AFL+ +L E + I+FCN+ T +E +L+R
Sbjct: 333 PPTLKQTYLQVPMTHREAFLH----VLLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSH 388
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
RV H+ L Q R AN+ F R+ ARL LV TD ASRG+D V V+ FD
Sbjct: 389 -----RVTSLHSLLPQSERTANLSRF---RASAARL-LVATDVASRGLDIPNVSLVINFD 439
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
PR+P +YV RVGRTAR AG TG++ V + V L I +R
Sbjct: 440 VPRNPDDYVHRVGRTAR-AGRTGESVTLVGQRDVQLVLAIEKR 481
>gi|330926789|ref|XP_003301614.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
gi|311323488|gb|EFQ90287.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
Length = 1053
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 192/396 (48%), Gaps = 42/396 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S+ +++ F ++IQ A PP++ G+ + A ++GSGKTLA+L+P I+
Sbjct: 576 FAELNLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 635
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q L+ ++ +G V++++PT ELA Q+ R L + + + GG + +
Sbjct: 636 LSQ--LRFKPRNGTG---VIVVSPTRELALQIFGVARELMEHHSQTFGICI-GGANRSAE 689
Query: 390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E L++GV++LIATPGR + L NLR ++DE D + + FE ++S+I
Sbjct: 690 AEKLRKGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRIL-EVGFEDEMRSIIKI 748
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP--------GMHRISPGLEEFLVDCS 500
P Q + +AT + VE + GP H GLE+ V C
Sbjct: 749 LPTERQTMLFSATQTTK-----VEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCD 803
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
D + L ++K K IVF + + +L D +
Sbjct: 804 SD------------TRFRLLFSFLKKHQKKKVIVFLSSCASVDFYSELLNYID-----LP 846
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
VL H L Q+ R EF ++S L+CTD A+RG+D VD V+ FD P DP
Sbjct: 847 VLGLHGKLKQQARTNRFFEFVNAQSGT----LICTDVAARGLDIPEVDWVIQFDPPDDPR 902
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+Y+ RVGRTARGA G G++ +F++ +V + + E
Sbjct: 903 DYIHRVGRTARGANGKGRSLMFLLPSEVGFLKLLKE 938
>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
Length = 606
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 189/407 (46%), Gaps = 49/407 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S +++++R F P+ IQA A PP + G+ I +G+GKT AYLLP+++
Sbjct: 31 SFKSLGLSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVE 90
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC------RSLSKCGVPFRSMVVTG 382
RL E P ++LAPT EL Q+ R L++ VVTG
Sbjct: 91 RLAGER----------GPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQA-------VVTG 133
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+E L++ +++ATPGR L+KEG+ L +R +LDE D + F L
Sbjct: 134 GTDMGAQVEALRQRPTLVLATPGRLADLLKEGVANLSAVRMLVLDEADRTL-EMGFMPEL 192
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSG 501
Q ++++ P Q L +ATL + EV +V + P + ++
Sbjct: 193 QQILAALPRERQTLLFSATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLY----- 247
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
E K LL L+ K +S +VF KV+ +LKR K +
Sbjct: 248 --------EVEASEKYPLLLSLLAKDQLS-VLVFTRTRERAEKVQEVLKRAGHKTAAI-- 296
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
HA Q R ++ F + + LV TD ASRG+D + HV+ FD P P +
Sbjct: 297 ---HADRTQGQRRQALEGFRRGQYR----CLVATDIASRGLDVEDIGHVINFDLPHAPED 349
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
YV R+GRTAR AG +G+A FV + + I R P +VP
Sbjct: 350 YVHRIGRTAR-AGASGRASTFVTSRDEETVRAIERIVRMSLPRAEVP 395
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 210/419 (50%), Gaps = 54/419 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L+++ +++ L +LDE D + D F ++ +++
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
P Q L +AT EI N+ VE+ + + + +++++ C
Sbjct: 175 LPAKRQNLMFSATFSDEIRELAKGLVNQPVEISVTPR-------NAAANTVKQWI--CPV 225
Query: 502 DQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
D+ N+KSALL QLI++ + +VF T + K + E +
Sbjct: 226 DK-----------NQKSALLIQLIKQEDWQQVLVFSR---TKHGANRLAKSLIQAE--IS 269
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + +F +S E R+ LV TD A+RG+D + VV FD P P
Sbjct: 270 AAAIHGNKSQGARTKALADF---KSGEVRV-LVATDIAARGLDIDQLPQVVNFDLPNVPE 325
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQ-------RIMERNR-KGH-PLHDVPSA 670
+YV R+GRT R AG +G+A V ++ L + R++ER +G P H +P +
Sbjct: 326 DYVHRIGRTGR-AGASGQAVSLVSSEEFKLLRDIERLINRVLERQEIEGFGPAHALPES 383
>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 412
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/386 (29%), Positives = 188/386 (48%), Gaps = 33/386 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S M++ +K ++ P+ IQ A P ++ G+ I + Q+G+GKT A+ LP++
Sbjct: 2 AFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +S PR++IL PT ELA+QV + R ++ R+ V+ GG
Sbjct: 62 KL---------ESHQPRPRLLILEPTRELAAQVETAIRDFARF-TNLRAAVLYGGVGYGR 111
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVD++IATPGR + ++ G + ++ +LDE D + D F ++ ++
Sbjct: 112 QMDALKAGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRML-DMGFLPDVRRIVDK 170
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P +AT+P +I + + + + + ++ + + DQ+SD
Sbjct: 171 CPRDRHTSLFSATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKHVIYPVAEDQKSD-- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L +L+E+ IVFC ++ +LKR + V H+
Sbjct: 229 ----------LLRELLERVNYDSVIVFCRTKHRADRIAILLKRNNHA-----VAVLHSNR 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R +K F R + LV TD A+RG+D A V HV+ +D P+ P +Y+ R+GR
Sbjct: 274 TQREREDALKGFRNGRFE----VLVATDIAARGLDIADVSHVINYDVPQHPEDYIHRIGR 329
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R A TG AF +V + Q I
Sbjct: 330 TGR-AAATGDAFTLMVAEDSQHVQSI 354
>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 405
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 195/386 (50%), Gaps = 34/386 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G D ++ ++ ++ P+ IQ AFP ++ G+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFQDFGLLDEVVHGVQSMGYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ + G R +IL PT ELA+QV + R S+ + + +V GG +
Sbjct: 62 KLK----------SHGDLRALILEPTRELAAQVETAFRDYSRF-MDVQVGLVHGGVGFGS 110
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q LQ+G DVL+ATPGR + +++G L N++ +LDEVD + D F ++ ++
Sbjct: 111 QRSMLQKGADVLVATPGRLLDFLEDGTANLKNIQYLVLDEVDRML-DMGFLPQVRRIVDR 169
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP E+ + D + V + + L + DQ+ D
Sbjct: 170 VPKERQTLFFSATLPPELETMTKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFD-- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L+ L+E++ I+F + + KV + LK D K + V H+
Sbjct: 228 ----------LLIALLERTKFDSAIIFTSTKIMADKVAHRLK--DLKHS---VAVLHSNR 272
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F + + + +V TD A+RG+D AGV HV+ +D P+ P +YV R+GR
Sbjct: 273 TQREREDALAGFKSGKYE----VMVATDIAARGLDIAGVSHVINYDVPQHPEDYVHRIGR 328
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R A TG AF +++ + I
Sbjct: 329 TGR-ALLTGDAFTIFTAEELDHVRSI 353
>gi|423347930|ref|ZP_17325615.1| hypothetical protein HMPREF1060_03287 [Parabacteroides merdae
CL03T12C32]
gi|409215416|gb|EKN08417.1| hypothetical protein HMPREF1060_03287 [Parabacteroides merdae
CL03T12C32]
Length = 427
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 187/394 (47%), Gaps = 41/394 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++ L NFL + +Q + P ++EGK I Q+G+GKT AY+LPVI
Sbjct: 3 FDELDLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINE 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG---FRQ 386
L + GL + + + +I+APT ELA Q+ + VP ++ V GG
Sbjct: 63 LSK----GLHPANAIN--AIIMAPTRELAQQIDQQIEGFTYF-VPVSAVAVYGGTDGIAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++ G D++IATPGR + IK G + L + +LDE D + D F + +
Sbjct: 116 EQQKRGMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRML-DMGFYDDIMQVY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q + +AT+P P + + I EE + S E+
Sbjct: 175 KLLPATCQTIMFSATMP-----------PKIRTLA----QTILKNPEEVKIAISRPPET- 218
Query: 507 KTPETAF----LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+TA+ + K L L KS + I+F + + +++ + LKR + V
Sbjct: 219 -IMQTAYVCYDMQKLRILEDLFSKSRPQRVIIFSSSKMKVKELASTLKRM-----KFNVA 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H+ L+Q R MKEF R LV TD SRGID + V+ FD P DP +Y
Sbjct: 273 AMHSDLEQSQREEVMKEFKNGRID----ILVATDVVSRGIDINDIKLVINFDIPHDPEDY 328
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
V R+GRTARG G G A F+ ++ +RI E
Sbjct: 329 VHRIGRTARGTNGEGLAITFISTEEQFQFKRIEE 362
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N ++ +K RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + + +
Sbjct: 184 RILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E DKT A++QLI + + + IVFCN + ++ L+R V
Sbjct: 241 EGDKT---------GAVVQLIRERSLKQVIVFCNSKIGASRLARSLER-----DGVVATA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
[Acyrthosiphon pisum]
Length = 678
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 190/385 (49%), Gaps = 33/385 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF+ G ++++L NF P+ +Q A P ++EG+ + + Q+GSGKT AY+LP
Sbjct: 251 SMTSFQSSGLRTILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLP 310
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG-- 383
++ L ++ Q + P VVI+APT EL SQ+ SK G R+ ++ GG
Sbjct: 311 ILHNLLKQPTQLIYDEHHCEPHVVIIAPTRELVSQISECVWKFSK-GTDIRNGLLYGGTS 369
Query: 384 -FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
+ QK+++ LQ GV +L ATPGR + +++GI+ +++ +LDE D + D F+ +
Sbjct: 370 VYHQKSKI--LQRGVHILTATPGRLIDFVEKGIVTFSSVKFFVLDEADRML-DMGFKPDI 426
Query: 443 QSLISSSPV----TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ ++++S + + Q + +AT I + + + G I ++ +
Sbjct: 427 EQVLTNSTMPSIESRQTIMFSATFASPIQHMATSYLKSDYIFVAVG--EIGGACKDVV-- 482
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
E KK+ALL +I E TIVF + L D T
Sbjct: 483 -------QTVIEVTKFKKKNALLDIIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTT 535
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
+ H A +Q R +++F T+R K LV T A+RG+D GV++VV FD P+
Sbjct: 536 SI-----HGAREQPEREQALRDFKTNRMK----ILVATAVAARGLDIKGVNYVVNFDLPK 586
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIF 642
EYV R+GRT R G GKA F
Sbjct: 587 TIDEYVHRIGRTGR-LGNAGKAISF 610
>gi|414170096|ref|ZP_11425710.1| hypothetical protein HMPREF9696_03565 [Afipia clevelandensis ATCC
49720]
gi|410884768|gb|EKS32588.1| hypothetical protein HMPREF9696_03565 [Afipia clevelandensis ATCC
49720]
Length = 491
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 196/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N++ P+ IQ P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALKEENYVTPTPIQTQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-MRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ +GV+V++ATPGR + +++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRSVMQGVEVMVATPGRLLDMVQGNALKLNQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + K
Sbjct: 177 LPIKRQTLFFSATMPKDIADLADQMLNDPARVAVTP-------------VSSTVERITQK 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L QL++ PV++ +VF T + ++K + + H
Sbjct: 224 VLQVDHSAKPAILAQLLKNEPVNRALVFTR---TKHGADKVVKGLVKAGIPAEAI--HGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F T + LV TD A+RGID G+ HV+ FD P YV R+G
Sbjct: 279 KSQNHRERVLAAFRTGDIRT----LVATDIAARGIDVDGISHVINFDLTNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A V G + R +ER
Sbjct: 335 RTAR-AGADGTAISLVAGAEELGYLRDIER 363
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 191/374 (51%), Gaps = 27/374 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFEQLKLIPPILKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ + + RS V+ GG QK
Sbjct: 62 LLSAQQRRPSGKRVI---RSLILTPTRELAIQISDNFKAYGRF-LNLRSAVIVGGVSQKA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++G+D+LIATPGR + L+ +G L +++ +LDE D + D F ++ +I+
Sbjct: 118 QEQALEQGMDILIATPGRLIDLMNQGFADLRHVQILVLDEADRML-DMGFIHDMRRIIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI LV+ ++ P I+P V + ++
Sbjct: 177 LPAKRQTLFFSATMPPEI-TSLVD-----SLLTNPMKIEITP------VSSTAERIKQSL 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK L+ L++ + +VF T + ++K + + + H
Sbjct: 225 YFVDKPNKLPLLIDLLQDKSIESALVFTR---TKHGADRLVKGLTKATITAQAI--HGDK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R A + F ++ LV TD A+RGID + HV+ ++ P P YV R+GR
Sbjct: 280 SQNARQAALNNFKQGVTR----MLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
T R AG +G A F
Sbjct: 336 TGR-AGLSGIAISF 348
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 263 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 308
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 309 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 364
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 365 HRIGRTGR-AGATGDAL 380
>gi|453331363|dbj|GAC86942.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 572
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 187/374 (50%), Gaps = 36/374 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +++ + P+ IQA A P V++G + Q+G+GKT ++ LP++++
Sbjct: 66 FADLGLAEPIMRAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLEK 125
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 126 LSG------SRARARMPRSLILEPTRELALQVADNFKLYGKY-LRLTHALLIGGESMAEQ 178
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L G + L ++DE D + D F ++ ++S
Sbjct: 179 REVLNRGVDVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRML-DMGFIPDIEKIVSLL 237
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ +EE L+ D+
Sbjct: 238 PRNRQTLFFSATMAPEI-RRLADAFLSNPVQITVSRPS--SVATTIEEGLIVVEEDE--- 291
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K+ AL +L+ V IVFCN+ ++ ++L+R+ K H
Sbjct: 292 ---------KRRALRKLLRSQDVQSAIVFCNR----KRDVDMLQRYLTKHG-FAAGHLHG 337
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R + + F + K LVC+D A+RGID G+ HV FD P + +YV R+
Sbjct: 338 DLAQSLRFSTLDSFKSGELK----ILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRI 393
Query: 627 GRTARGAGGTGKAF 640
GRT R AG G AF
Sbjct: 394 GRTGR-AGKHGHAF 406
>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 541
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 193/405 (47%), Gaps = 47/405 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G + ++ ++ + P+ +Q + P ++ G+ I+ Q+GSGKT A++LPVI +
Sbjct: 123 FPGCGIRNEVLRNVAHNGYKVPTPVQRYSIPYILNGEDLIVTSQTGSGKTAAFMLPVITQ 182
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S +P V L PT ELA Q+ R K G ++ V GG Q
Sbjct: 183 L-------IGTCHSPNPSCVALCPTRELAIQIFEETRKFCK-GTDLKTTCVFGGAPITEQ 234
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ NL G+D++IATPGR + ++K+ + L +R ILDE D + D FE +Q +I+
Sbjct: 235 IRNLSRGIDIVIATPGRLIDILKQHCITLSEVRFLILDEADRML-DMGFEPQMQEVINGW 293
Query: 450 PVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ Q + +AT P + N L F M P RIS G+ Q++
Sbjct: 294 DMPPADDRQTMLFSATFPDAVRN-LARDF------MRPKYCRISVGM----------QDA 336
Query: 506 DKTPETAF-----LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
K+ E F ++K S LL +I K T+VF + V+ ++E L +
Sbjct: 337 PKSIEQRFIYCSEMDKFSELLGVI-KEVDGPTLVFAERKVSVDRIERFLY-----DEHTA 390
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
V+ H + RLA +++FTT R+ +V TD ASRG+D + V HV+ D P D
Sbjct: 391 VVAIHGERQMDQRLAALRQFTTGRAN----IMVATDVASRGLDISNVAHVINLDLPTDLD 446
Query: 621 EYVRRVGRTAR-GAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
Y R+GRT R G G +F F LAQ I K P+
Sbjct: 447 TYTHRIGRTGRAGKHGLATSF-FNESNNAFLAQLIQHLRSKNLPI 490
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 192/386 (49%), Gaps = 29/386 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + PS IQ A P V+EGK + + Q+G+GKT + LP++
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L QG K R ++L PT ELA+Q+ N R SK V +S V+ GG Q
Sbjct: 62 NLIANPRQGRRKV-----RALVLTPTRELAAQIYDNVREYSKY-VDIKSTVIFGGVNQNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVD+L+ATPGR + L +G+L L ++ +LDE D + D F ++ ++
Sbjct: 116 QVRTIRQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRML-DMGFIHDIKKVLRL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +NK ++ ++ P + +P + + ++ KT
Sbjct: 175 VPAKRQNLLFSAT-----FNKDIKKLASS-ILTNPVLVEATPE------NTTAEKVDQKT 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K L++ I + + +VF T + ++ D+ + H
Sbjct: 223 YRVDKSRKTEMLIKFINEGNWDQVLVFTR---TKHGANRLSQKLDK--AGITSAAIHGNK 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R+ + F + + + LV TD A+RG+D + +V+ ++ P P +YV R+GR
Sbjct: 278 TQNARVKALAGFKSGKIR----VLVATDIAARGLDIPLLPYVINYELPNVPEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG +G+A V +V+ + I
Sbjct: 334 TGR-AGASGQAISLVGVDEVAYVRGI 358
>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 539
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 193/388 (49%), Gaps = 36/388 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S + ++++ + P+ IQA A P ++ G+ + Q+G+GKT ++ LP++
Sbjct: 50 FSELGLSAPIQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPML-- 107
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E L G S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 108 ---EILSG-SRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGESMAEQ 162
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L + G L L + ++DE D + D F ++ ++S
Sbjct: 163 KEALNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRML-DMGFIPDIEKIVSML 221
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q LF +AT+ EI +L ++F P V P ++ +E LV D
Sbjct: 222 SPIRQTLFFSATMAPEI-RRLADMFLHNPKEITVSRPS--SVASTIETGLVIVEED---- 274
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+K+ AL +L+ +S + I+FCN+ R V+ + K + L H
Sbjct: 275 --------DKRRALRKLLRESDMQNAIIFCNR---KRDVDVLCKSLLKHGFSAGAL--HG 321
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R + ++ F + K LVC+D A+RGID G+ HV FD P +YV R+
Sbjct: 322 DLPQSLRFSTLEAFKSGELK----ILVCSDIAARGIDIGGLSHVFNFDLPFHAEDYVHRI 377
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG TG A+ + LA+ I
Sbjct: 378 GRTGR-AGRTGHAYSLATPYEQPLAEAI 404
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 204/385 (52%), Gaps = 35/385 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ ++FKELG S+ +++++ F PS IQ A P ++GK I Q+G+GKT A+ +
Sbjct: 6 YMYETFKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGI 65
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++QR+ ++ P+ ++L+PT ELA Q L++ + +++ + GG
Sbjct: 66 PILQRI---------DTSKPGPQAIVLSPTRELAIQSAEEINHLAQY-MNIKTIPIYGGQ 115
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q L++ ++++ATPGR M +K + L N++ A+LDE D + D F +++
Sbjct: 116 DIERQFRALKKKTNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMV-DMGFIDDIRT 174
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+++++P Q LF +AT+P I +L F + ++ ++ L E QE
Sbjct: 175 IMAATPKERQTLFFSATMPAPI-RELANSFLNEPEIVKIKAATVTIDLIE--------QE 225
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ P+ K AL +L++ IVF T R+ + + + ++ L
Sbjct: 226 YIELPDR---QKFDALCRLLDMQSPELAIVFVR---TKRRADEVTEALKKRAYSAEGL-- 277
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q+ R + +++F KE + FLV TD A+RG+D +GV HV FD P+DP YV
Sbjct: 278 HGDLSQQKRDSVIRQF-----KEGTIDFLVATDVAARGLDISGVTHVYNFDMPQDPEIYV 332
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQV 648
RVGRT R AG TG A FV+ +++
Sbjct: 333 HRVGRTGR-AGKTGLATTFVISREM 356
>gi|357031470|ref|ZP_09093413.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414700|gb|EHH68344.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 398
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 136/417 (32%), Positives = 204/417 (48%), Gaps = 42/417 (10%)
Query: 247 EPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK 306
EP + ++ +A S F LG ++ +L++ RPS IQ A P ++ G+
Sbjct: 4 EPEEIWQEAIMTTAKKISASSPDFPALGLMPPLLAALEQAGHKRPSDIQTEAIPALLAGR 63
Query: 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
++A Q+GSGKT A++LP++Q+L + E T+G PR +IL PT ELA+Q S CR
Sbjct: 64 DVLVASQTGSGKTAAFVLPMLQKLAETE------RTNG-PRALILEPTRELAAQTASVCR 116
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426
+L + +P ++ V+ GG ++ QL L +G D+L+AT GR + + + + L NL +L
Sbjct: 117 TLGR-RLPLKTRVICGGISREQQLRTLADGPDILVATHGRLLDFVTQADIVLENLTYLVL 175
Query: 427 DEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM 485
DE D L DEDF ++ +L P Q +F +ATLP + + V D
Sbjct: 176 DEADRLL-DEDFSASMTALAPYFPDHPPQTVFCSATLPEPVMELALRVTRDPV------- 227
Query: 486 HRISPGLEEFLVDCSGDQ----ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVT 541
RI E F + E D PET + +++ + P ++IVF T
Sbjct: 228 -RIESTAETFTPKRIRQRALFVEKDDKPET--------VARILTRFP-GRSIVFAR---T 274
Query: 542 CRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRG 601
V+ + K R RV L H Q R +++F LV TD ASRG
Sbjct: 275 KNNVDALGKTLKRHGLRVETL--HGDRMQGARNKALEQFRNGHVP----ILVTTDIASRG 328
Query: 602 IDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
+D V+ V+ D P P YV R+GRTAR AG G AF + + L R +ER+
Sbjct: 329 LDIPDVELVINMDMPETPEAYVHRIGRTAR-AGKKGAAFSLINADE-RLRLREIERH 383
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 184/374 (49%), Gaps = 27/374 (7%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K FKE G ++E++ +L + IQA++FPP++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPL 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ R+ + S S + P R+++L PT ELA Q+ N + + G+P R+ ++ GG
Sbjct: 63 LNRMIPK--ASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAYAD-GLPLRTSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L G D++IATPGR + +++ + L + ILDE D + D F + L +
Sbjct: 120 FNAQKHELMRGADIVIATPGRLLDHVEQRTINLNQVEFLILDEADRML-DMGFMLDLLKI 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
++ P Q L +AT I + + D + + + + + + S +
Sbjct: 179 LAQLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAE-- 236
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K +ALL L+ + I+F N+ +TC+ +E L D + H
Sbjct: 237 ----------KNAALLYLLASRNFNNVIIFSNRKITCKNLERYLNNLD-----LSAQSLH 281
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F +S+ LV TD A+RG+D + VD V+ ++ P +YV R
Sbjct: 282 GDKTQSERTKALNLFKSSKCN----ILVATDVAARGLDISDVDAVINYELPPTSEDYVHR 337
Query: 626 VGRTARGAGGTGKA 639
+GRT R AG G A
Sbjct: 338 IGRTGR-AGRKGIA 350
>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
gi|365829799|ref|ZP_09371390.1| hypothetical protein HMPREF1021_00154 [Coprobacillus sp. 3_3_56FAA]
gi|374626591|ref|ZP_09699003.1| hypothetical protein HMPREF0978_02323 [Coprobacillus sp.
8_2_54BFAA]
gi|167704901|gb|EDS19480.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|365264380|gb|EHM94189.1| hypothetical protein HMPREF1021_00154 [Coprobacillus sp. 3_3_56FAA]
gi|373914119|gb|EHQ45952.1| hypothetical protein HMPREF0978_02323 [Coprobacillus sp.
8_2_54BFAA]
Length = 436
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 206/403 (51%), Gaps = 35/403 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + ++ ++K + PS IQ A P ++ G+ ++G+GKT A+ LP++Q+
Sbjct: 3 FSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ S+ + + +ILAPT ELA Q+ +++ V +S V+ GG RQ +Q
Sbjct: 63 LY---LRDESEKYPRTIKALILAPTRELAIQINETFEAMNP-QVNLKSAVIFGGVRQGSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + G+DVLIATPGR + L +G++ L ++ +LDE D + D F ++ ++
Sbjct: 119 VTKINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRML-DMGFIKDIRKILRFI 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPG---MHRISPGLEEFLVDCSGDQES 505
P Q + +ATLP EI + + ++ D K+++ G + +I+ L + VD
Sbjct: 178 PRRHQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSL--YFVDK------ 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+NK L++L+E + IVF + T R V+ + K+ + ++ H
Sbjct: 230 --------VNKAKLLIKLLENPQIYNAIVF---VRTKRNVDTLCKKLIK--AQITCEGIH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R+ + F + + LV +D A+RGID + HV+ FD P YV R
Sbjct: 277 GDKSQNARVRALNNFKNDKVR----VLVASDIAARGIDIDELTHVINFDLPDQAENYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
+GRTAR AG +G+A F ++ +L + I + + P+ D P
Sbjct: 333 IGRTAR-AGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNP 374
>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
43184]
gi|423721833|ref|ZP_17696009.1| hypothetical protein HMPREF1078_00072 [Parabacteroides merdae
CL09T00C40]
gi|154089130|gb|EDN88174.1| DEAD/DEAH box helicase [Parabacteroides merdae ATCC 43184]
gi|409242846|gb|EKN35605.1| hypothetical protein HMPREF1078_00072 [Parabacteroides merdae
CL09T00C40]
Length = 427
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 187/394 (47%), Gaps = 41/394 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++ L NFL + +Q + P ++EGK I Q+G+GKT AY+LPVI
Sbjct: 3 FDELDLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINE 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG---FRQ 386
L + GL + + + +I+APT ELA Q+ + VP ++ V GG
Sbjct: 63 LSK----GLHPANAIN--AIIMAPTRELAQQIDQQIEGFTYF-VPVSAVAVYGGTDGIAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++ G D++IATPGR + IK G + L + +LDE D + D F + +
Sbjct: 116 EQQKRGMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRML-DMGFYDDIMQVY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q + +AT+P P + + I EE + S E+
Sbjct: 175 KLLPATCQTIMFSATMP-----------PKIRTLA----QTILKNPEEVKIAISRPPET- 218
Query: 507 KTPETAF----LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+TA+ + K L L KS + I+F + + +++ + LKR + V
Sbjct: 219 -IMQTAYVCYDMQKLRILEDLFSKSRPQRVIIFSSSKMKVKELASTLKRM-----KFNVA 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H+ L+Q R MKEF R LV TD SRGID + V+ FD P DP +Y
Sbjct: 273 AMHSDLEQSQREEVMKEFKNGRID----ILVATDVVSRGIDINDIKLVINFDIPHDPEDY 328
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
V R+GRTARG G G A F+ ++ +RI E
Sbjct: 329 VHRIGRTARGTNGEGLAITFISTEEQFQFKRIEE 362
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 560
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 189/381 (49%), Gaps = 38/381 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +LG S+ + +++R + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 54 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 113
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K +PRV++++PT ELA Q+ C +++ + + V GG
Sbjct: 114 STLPR------GKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVF-GGTPYG 166
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++ G DVLIATPGR L+ +G++ L ++ +LDE D + D F A+ +++
Sbjct: 167 PQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRML-DMGFLPAVTTIVD 225
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q L +AT+ I L + D VV + +E+F++
Sbjct: 226 ATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMM---------- 275
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFC---NKIVTCRKVENILKRFDRKETRVRVLP 563
P F KK LLQ L+E+ + IVF N+ C E + R E+
Sbjct: 276 -PIANF--KKPELLQALLEEKGSDRVIVFARTKNRTEDC--AEALCDAGYRAES------ 324
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H+ Q R + F R+ LV TD +RGID VDHV+ FD P P +YV
Sbjct: 325 IHSDKSQGQRKRALDNFRRGRTS----ILVATDVLARGIDVPDVDHVINFDLPDMPEDYV 380
Query: 624 RRVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G A FV
Sbjct: 381 HRIGRTGR-AGEQGFAVSFVT 400
>gi|440227497|ref|YP_007334588.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
gi|440039008|gb|AGB72042.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
Length = 548
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 189/387 (48%), Gaps = 31/387 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 4 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E + +++ R +ILAPT EL +Q+ N R + ++VV G K Q
Sbjct: 64 LLKEAKRPDNRTV----RTLILAPTRELVNQIADNLRLFMRKTQLRINLVVGGASINKQQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L+ G D+L+ATPGR + LI L L ++ +LDE D + D F L+ +
Sbjct: 120 LQ-LERGTDILVATPGRLLDLINRRALSLGHVTHLVLDEADQML-DLGFIHDLRKIAKMV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + + KV + P PG + D+
Sbjct: 178 PAKRQTLLFSATMPKAIGDLASDYLTNPVKVEVSP------PG-------KAADKVEQYV 224
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
A N K+ +L + I +P + IVF + T E ++K D H
Sbjct: 225 HFVAGQNHKTEILKETISANPDGRAIVF---LRTKHGAEKLMKHLD--HVGFAAASIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F R + R+ LV TD A+RGID GV HV FD P P YV R+G
Sbjct: 280 KSQGQRERALKGF---RDGDVRV-LVATDVAARGIDIPGVSHVYNFDLPEVPDAYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR AG G A F ++ L + I
Sbjct: 336 RTAR-AGRDGIAIAFCAPDEIRLLRDI 361
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 205/413 (49%), Gaps = 42/413 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 175 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+KSALL QLI++ + +VF K R +N+ +E ++ H
Sbjct: 228 ------GQKSALLTQLIKQHDWQQVLVFSRTKHGANRLAKNL------EEAGIKAAAIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + +F + + LV TD A+RG+D + VV FD P P +YV R+
Sbjct: 276 NKSQTARTKALADFKNGQVR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVS-------LAQRIMERN--RKGHPLHDVPSA 670
GRT R AG +G+A V +++ L RI++R +P+H +P +
Sbjct: 332 GRTGR-AGASGQAVSLVSSEEIKLLNDIERLINRILDREVVEGFNPVHPLPES 383
>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 540
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 185/382 (48%), Gaps = 34/382 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG ++ ++ +L + + P+ IQA A P ++ GK I Q+G+GKT A+ LP++
Sbjct: 3 SFSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFRQ 386
L + + +S RV+IL+PT EL+ Q+L N L K G R + + GG
Sbjct: 63 HLSRNPRRIEPRSC----RVLILSPTRELSGQILDN---LDKFGRHIRLSTTLAIGGVPM 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ LQ GVDVL+ATPGR M L++ L+L + +LDE D + D F A+++++
Sbjct: 116 GRQIRALQRGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQML-DMGFVHAIKAIV 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P LF +AT+P I + + + V ++P V + D+
Sbjct: 175 RRLPHKRHSLFFSATMPSAIADLAASMLRNPVTVA------VTP------VAKTADRVDQ 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ K L +++ V + +VF KV +L R K + H
Sbjct: 223 RVIFVEKPAKAKMLAEVLSTEEVDRALVFTRTKHGADKVVQVLARAGHKAEAI-----HG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F +E L LV TD A+RGID GV HV+ +D P P YV R
Sbjct: 278 NKSQNQRDRVLAAF-----REGSLRTLVATDIAARGIDVTGVSHVINYDLPNVPESYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQ 647
+GRTAR AG G A F G++
Sbjct: 333 IGRTAR-AGREGIAISFCDGEE 353
>gi|429330588|ref|ZP_19211374.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
gi|428764698|gb|EKX86827.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
Length = 441
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/404 (31%), Positives = 201/404 (49%), Gaps = 29/404 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L N+ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAKLGLIEPLLRALDGLNYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV +N R ++ +P R+ V GG
Sbjct: 62 RLTLEGAQ----VAANSVRALVLVPTRELAEQVHANIREYAEH-LPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+D+L+ATPGR + L ++ ++ L+ +LDE D + D F L+S+ ++
Sbjct: 117 QMMKLRKGIDLLVATPGRLLDLFRQNAVKFNQLQALVLDEADRML-DLGFAEELRSIYAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q L +AT EI ++ + V + + +++++V DK
Sbjct: 176 LPVKRQTLLFSATFSDEIRLMAGQMLANPLSVEVSPRNVTASTVKQWIVTV------DKK 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K L+ K S+ +VF T V+ +++R + H
Sbjct: 230 ------RKAELFCHLLRKQRWSQVLVFAK---TRNGVDQLVERL--LGMGINADGIHGDR 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q TR + F +++E ++ LV TD A+RG+D + VV FD P +YV R+GR
Sbjct: 279 PQATRQRALDSF---KAREVQI-LVATDVAARGLDIDDLPLVVNFDLPIVAEDYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
T R AG TG+A V +V L I RK P HD P FE
Sbjct: 335 TGR-AGNTGEAISLVCADEVQLLSAIETLTRKTLPRHDEP-GFE 376
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 197/396 (49%), Gaps = 49/396 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E+G + + E++ + + P+ IQ A P ++GK + Q+G+GKT A+LLP I+
Sbjct: 2 SFSEIGLTSELAETVAKLGYDCPTPIQNTAIPLALQGKDILACAQTGTGKTAAFLLPTIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ S+S P VILAPT ELA+QV N S + G +++ V GG
Sbjct: 62 IIKH------SRSRHRLPSAVILAPTRELATQVYDNFLSYT-AGTNLKAISVVGGEIISI 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+LIATPGR + L + G L L N++ ++DE D + D F + + S
Sbjct: 115 QERILKKGVDILIATPGRLIDLFERGKLILTNVKVVVIDEADRML-DMGFMPEVDKIFSF 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD-QESDK 507
P Q L +AT+ P + RIS + ++ C S K
Sbjct: 174 LPRLRQTLMFSATI-------------------SPEIKRISQSYQ--ILPCEIKISRSAK 212
Query: 508 TPET----AF----LNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETR 558
T ET F + K+ AL +++ P V T++FCNK + V+ + K R
Sbjct: 213 TAETIEQSVFYVEEMQKRVALRKVLRSHPSVEPTVIFCNK---KKDVDILAKSLQRHGFS 269
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
+ L H +DQ +R ++ F R R+ LV TD A+RGID +G+ V+ FD P
Sbjct: 270 AQAL--HGDMDQRSRNETLENF---RKGNYRI-LVTTDVAARGIDVSGITLVINFDVPVH 323
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+YV R+GRT R AG G A +FV + +RI
Sbjct: 324 EEDYVHRIGRTGR-AGKNGVAIMFVTKGETKKLKRI 358
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 197/382 (51%), Gaps = 47/382 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L +I++L+++++L P+ IQ A P ++ G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR+E+ S + R +I+ PT ELA Q+ + + K + VV GG QK Q
Sbjct: 63 LREEK---ESHGAKQNIRALIVTPTRELALQIYESFNTYGKF-TDLKCCVVFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L++ VD+L+ATPGR + LI + I+ + +++ ILDE D + D F ++ +I+ +
Sbjct: 119 EEKLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRML-DMGFIHDVKKIIART 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--------GLEEFLVDCSG 501
P+ Q L +AT+P +I KL ++ P I+P G + VD S
Sbjct: 178 PLKKQTLLFSATMPPDI-AKLAGT-----ILKAPAKIEITPVSSTVDTIGQYVYFVDKS- 230
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
NKK LL +++ + + +VF + ++ R +++ +R V
Sbjct: 231 -------------NKKDLLLHVLKDNNIVSALVFT-------RTKHGADRLNKQLSRNNV 270
Query: 562 L--PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+ H Q R + + F ++K R+ L+ TD A+RGID + HV+ +D P P
Sbjct: 271 IAQAIHGDKSQGARQSALNNF---KNKSLRI-LIATDIAARGIDIDELTHVINYDLPDIP 326
Query: 620 SEYVRRVGRTAR-GAGGTGKAF 640
YV R+GRT R G GGT +F
Sbjct: 327 ETYVHRIGRTGRAGLGGTAISF 348
>gi|62289879|ref|YP_221672.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|376273333|ref|YP_005151911.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166951|ref|ZP_17153654.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|423170675|ref|ZP_17157350.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|423173245|ref|ZP_17159916.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|423177470|ref|ZP_17164116.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|423180106|ref|ZP_17166747.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|423183238|ref|ZP_17169875.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|423185822|ref|ZP_17172436.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
gi|423188960|ref|ZP_17175570.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|363400939|gb|AEW17909.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374540723|gb|EHR12223.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|374542573|gb|EHR14061.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|374542884|gb|EHR14369.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|374549951|gb|EHR21393.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|374550470|gb|EHR21909.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|374550754|gb|EHR22190.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|374558618|gb|EHR30011.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|374559616|gb|EHR31002.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
Length = 482
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 199/397 (50%), Gaps = 40/397 (10%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
K+F+ L S +++++K F P+ IQA A P ++ G I Q+G+GKT A+
Sbjct: 1 MLETKTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFG 60
Query: 324 LPVIQRL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+P++++L R +Q L ++ PT ELA QV L K R++ V
Sbjct: 61 IPILEKLNPRYRAVQAL-----------VITPTRELAIQVAEEIMKLGKFK-DVRTLAVY 108
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG Q+ L+ GV V++ TPGR + I G L+L +L+ +LDE D + D F
Sbjct: 109 GGQSIDRQIGALKRGVQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEML-DMGFIDD 167
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
++++I +P T Q L +AT+P EI + + ++V P +E+ +
Sbjct: 168 IEAIIKETPETRQTLLFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVR- 226
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+KT K +L +++E V+ I+FC T R V+ ++ + + +
Sbjct: 227 ----EKT-------KLESLCRVLETIDVTLAIIFCK---TKRGVDELVASLETRGYQAEG 272
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
L H L Q R M++F + +LV TD A+RG+D V HV+ +D P+DP
Sbjct: 273 L--HGDLTQAQRNKVMRKFKNGQVD----YLVATDVAARGLDIENVSHVINYDIPQDPEV 326
Query: 622 YVRRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIM 655
YV R+GRT R AG +GKA F+V +Q+ L ++I+
Sbjct: 327 YVHRIGRTGR-AGRSGKAITFIVPEEYRQLRLIEKII 362
>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
gi|442570093|sp|Q755N4.2|DBP2_ASHGO RecName: Full=ATP-dependent RNA helicase DBP2
gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
gi|374108557|gb|AEY97463.1| FAFL221Cp [Ashbya gossypii FDAG1]
Length = 557
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/396 (30%), Positives = 192/396 (48%), Gaps = 40/396 (10%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F E G +Y+++ +K + F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 114 RTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 173
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L S P V++LAPT ELA Q+ C + R+ V GG +
Sbjct: 174 VHINAQPLL----SPGDGPVVLVLAPTRELAVQIQKECSKFGRSS-RIRNTCVYGGVPKS 228
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +LQ GV++LIATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 229 QQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVD 287
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG----PGMHRISPGLEEFLVDCSGD 502
Q L +AT P E+ + D +V +G H I+ LV+ D
Sbjct: 288 QIRPDRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQ-----LVEVVSD 342
Query: 503 QESDKTPETAFLNKKSALLQLIE---KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
+K+ L++ +E K SK I+F + TC ++ + L ++
Sbjct: 343 -----------FDKRDRLVKHLEIASKDKDSKIIIFASTKRTCDEITSYL-----RQDGW 386
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
L H Q+ R + EF T RS +V TD A+RGID G++ V+ +D P +
Sbjct: 387 PALAIHGDKQQQERDWVLNEFRTGRSP----IMVATDVAARGIDVKGINFVINYDMPGNI 442
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
+YV R+GRT R AG TG A F +L +++
Sbjct: 443 EDYVHRIGRTGR-AGATGTAISFFTEANKTLGAQLI 477
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/413 (30%), Positives = 205/413 (49%), Gaps = 42/413 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 73 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 186 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 238
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+KSALL QLI++ + +VF K R +N+ +E ++ H
Sbjct: 239 ------GQKSALLTQLIKQHDWQQVLVFSRTKHGANRLAKNL------EEAGIKAAAIHG 286
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + +F + + LV TD A+RG+D + VV FD P P +YV R+
Sbjct: 287 NKSQTARTKALADFKNGQVR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI 342
Query: 627 GRTARGAGGTGKAFIFVVGKQVS-------LAQRIMERN--RKGHPLHDVPSA 670
GRT R AG +G+A V +++ L RI++R +P+H +P +
Sbjct: 343 GRTGR-AGASGQAVSLVSSEEIKLLNDIERLINRILDREVVEGFNPVHPLPES 394
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
Length = 432
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 185/374 (49%), Gaps = 27/374 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S ++++L+ + + PS IQ A P V+ GK + Q+G+GKT A+ LP+IQ
Sbjct: 2 TFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + SK R +IL PT ELA Q+ N + P R V+ GG
Sbjct: 62 NLMRPSDKKHSKRVI---RSLILTPTRELALQIAENFKEYG-SHTPVRCAVIFGGVSAVP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ G+D+L+ATPGR LI +G + L ++ +LDE D + D F ++ +IS
Sbjct: 118 QIKELQRGIDILVATPGRLNDLIHQGEISLSHVEMFVLDEADRML-DMGFIHDVKKIISL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q L +AT+P EI L E K++ P + ++P +VD D
Sbjct: 177 LPVKKQTLLFSATMPPEI-QALTE-----KLLHNPAVVEVTP--VSSIVDLIEDSLYYVD 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
E NK++ L+ L+++ ++ T+VF ++ L + R+ H
Sbjct: 229 KE----NKRALLVHLLKREAITSTLVFTRTKHGADRMAKFLTK-----NRINAAAIHGDK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + +F + L TD A+RGID + V+ FD P P YV R+GR
Sbjct: 280 SQGARQKALSQFKAGTVR----VLAATDIAARGIDIEELSCVINFDLPNVPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
T R AG G+A F
Sbjct: 336 TGR-AGLGGRAISF 348
>gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340790566|ref|YP_004756031.1| ATP-dependent RNA helicase [Brucella pinnipedialis B2/94]
gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340559025|gb|AEK54263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella
pinnipedialis B2/94]
Length = 482
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 463
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 186/380 (48%), Gaps = 40/380 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L + +L + + P+ IQ ++ P +++ + I Q+G+GKT A++LP++Q
Sbjct: 2 SFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ K+T PRV++LAPT ELA+Q+ + + K ++ VV GG Q
Sbjct: 62 NMSAIH----KKATPKKPRVLVLAPTRELAAQIGESFATYGKY-TRYKHTVVFGGVGQTP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVD L+ATPGR + LI++G ++L N+ +LDE D + D F + ++
Sbjct: 117 QVRALSRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRML-DMGFLNDVNKIVDM 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSGD 502
P Q LF +AT+ EI + L K++ P ++P +E+F+ D
Sbjct: 176 LPKKRQSLFFSATMSPEI-STLAR-----KMLSNPAQVEVTPQATTVERIEQFIFFVDSD 229
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
NK LL L+ + +VF KV +L + + +
Sbjct: 230 ------------NKNELLLHLLRGEHLDCVLVFTRTKHRANKVTEMLNK-----SNINAG 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H + Q R ++ F +S + R+ LV TD A+RGID + HV+ +D P P Y
Sbjct: 273 AIHGSKSQTHRTKTLQNF---KSGQLRV-LVATDIAARGIDIEDISHVINYDLPNIPESY 328
Query: 623 VRRVGRTARGAGGTGKAFIF 642
V R+GRTAR AG G A+ F
Sbjct: 329 VHRIGRTAR-AGAEGTAYSF 347
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
Length = 482
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDTLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
Length = 482
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGIDHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|407701321|ref|YP_006826108.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250468|gb|AFT79653.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
Length = 483
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 203/404 (50%), Gaps = 52/404 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
RL SG P R +IL PT ELA+QV + + S+ +P ++ VV G
Sbjct: 62 RL-----------MSGQPVSGNNVRALILTPTRELAAQVEESISAFSEF-LPLKTAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F +
Sbjct: 110 GVGINPQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDI 168
Query: 443 QSLISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+ ++ P Q L +AT EI K + P + P + +E+ LV
Sbjct: 169 KRVLKLLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVEQHLVTI- 225
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
DK+ +T +AL+ LI++ + +VF ++ L R +++
Sbjct: 226 -----DKSKKT------TALICLIKQQKWEQVLVFSRTKHGANRIAEKLSR-----SKIP 269
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + +F + K LV TD A+RGID + + VV D P P+
Sbjct: 270 SAAIHGNKSQGARTKALADFKSGAIK----VLVATDIAARGIDISELPIVVNLDLPNTPA 325
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMER 657
+YV R+GRT R AG +G+A+ FV +++ +L Q+++ R
Sbjct: 326 DYVHRIGRTGR-AGASGQAWSFVCAEELQNLKDIETLIQKLLPR 368
>gi|406660602|ref|ZP_11068732.1| ATP-dependent RNA helicase rhlE [Cecembia lonarensis LW9]
gi|405555521|gb|EKB50537.1| ATP-dependent RNA helicase rhlE [Cecembia lonarensis LW9]
Length = 453
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 206/409 (50%), Gaps = 34/409 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ + ++E++ + +P+ IQ A P + G + Q+G+GKT AY+LP++
Sbjct: 7 TFENFKLNKQLLEAVSDAGYTKPTPIQEKALPLALSGHDVLGIAQTGTGKTAAYVLPLLM 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+++ QG+ PR +ILAPT EL Q+ + K R + + GG KT
Sbjct: 67 KVKYA--QGMH------PRALILAPTRELVMQIEEAVVTFGKY-TDLRYVCLYGGLGPKT 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E LQ GVD++I+TPGRF+ L K+G + ++ ILDE D + D F ++S++
Sbjct: 118 QIEKLQAGVDIIISTPGRFIDLYKKGEIFTKEIKTMILDEADKML-DMGFMPQIRSILEF 176
Query: 449 SPVTAQYLFVTATL--PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
PV Q L +AT VE +++ FP+ +V + P E + D +
Sbjct: 177 IPVKRQNLLFSATFGPKVEKFSQEFLEFPE-RVEVAP-----QATTAETIQQVKYDVPNI 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT K + L+ L++ +++ I+F V N L+R E RV HA
Sbjct: 231 KT-------KINLLIHLLKDENLNRVIIFAKSRKNAESVFNFLERKKLGEIRV----IHA 279
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q TR+ +M++F ++ + R+ LV TD A+RG+D + V HV+ FD P +YV R+
Sbjct: 280 NKGQNTRINSMEDF---KAGDVRI-LVATDVAARGLDISMVSHVINFDVPLIYEDYVHRI 335
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELMR 675
GRT R A G A F+ + ++I E R P +P+ ++ +
Sbjct: 336 GRTGR-AENEGFAITFINPAEEYHFEKIQEIIRMEVPRVQIPAEVDITQ 383
>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
16M]
gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|384211314|ref|YP_005600396.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|384408416|ref|YP_005597037.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|384445012|ref|YP_005603731.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
16M]
gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|349743004|gb|AEQ08547.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
Length = 482
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|376274316|ref|YP_005114755.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
gi|376280615|ref|YP_005154621.1| DEAD/DEAH box helicase [Brucella suis VBI22]
gi|384224609|ref|YP_005615773.1| DEAD/DEAH box helicase [Brucella suis 1330]
gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
1330]
gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
23365]
gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|343382789|gb|AEM18281.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|358258214|gb|AEU05949.1| DEAD-box ATP dependent DNA helicase [Brucella suis VBI22]
gi|363402883|gb|AEW13178.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
Length = 482
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
Length = 481
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 199/395 (50%), Gaps = 34/395 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+++ ++ +K + F +P+ IQA A P + G+ + ++GSGKT A+ +P+I
Sbjct: 48 ESFEDMNLDTKIMMDIKYKEFDKPTPIQAQAIPVICSGRDVLGCAETGSGKTAAFSIPMI 107
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q L+Q E++ P +++APT ELA Q+ + S+ F++ +V GG
Sbjct: 108 QHCLQQPEIK-----RGDGPFAIVMAPTRELAQQIEKEAKIFSRSSKGFKTTIVVGGTNM 162
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q +L+ GV+V +ATPGR + + +G L + ILDE D + D FE ++ ++
Sbjct: 163 SEQRMDLKNGVEVCVATPGRLIDHLHQGNTNLARVSLVILDEADRML-DMGFEPQIREVM 221
Query: 447 SSSPVTAQYLFVTATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+ P Q L +AT+PVE+ NK V+V V P ++ LE+ LVD
Sbjct: 222 MNLPKPHQTLLFSATMPVEVEALAADYLNKPVKV--KVGAVSVP-TSNVAQHLEK-LVDS 277
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
Q+ D+ E L +K+ + + P+ T+VF + ++ +L V
Sbjct: 278 ---QKVDRLCEL-LLEEKAEAEKFGGQLPM--TVVFVERKARADEIMTLL-----NAEGV 326
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
FH Q+ R A + +FTT R LV TD A+RG+D GV HVV D PR
Sbjct: 327 AAAAFHGGRSQQEREAALADFTTGRCA----VLVATDVAARGLDVKGVQHVVNLDLPRMF 382
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+YV RVGRT R AG TG+A F + L +I
Sbjct: 383 EDYVHRVGRTGR-AGMTGRATSFYTDRDSFLVAQI 416
>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 493
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 200/408 (49%), Gaps = 34/408 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G ++E L+ + F P+ IQA +P + G+ + Q+GSGKTL+++LP +
Sbjct: 89 FEEAGFPSRIVEELEGKGFSGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPGL-- 146
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKT 388
+ ++ Q L + P ++LAPT EL Q+ CG+ RS V GG +
Sbjct: 147 VHAKDQQPLRRGD--GPIALVLAPTRELVMQIKKVADEF--CGMFGLRSTAVYGGASSQP 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L EGV+++IATPGR + L ++G L + +LDE D + D FE L+ +I
Sbjct: 203 QIKALHEGVEIVIATPGRLIDLHEQGHAPLSRVTFLVLDEADRML-DMGFEPQLRKIIPK 261
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ Q L +AT P E+ L E + + +VV+G + + +++ + CSG ++ D
Sbjct: 262 TNGNRQTLMWSATWPREV-RGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKED 320
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K LL +++K K IVFCN TC +E +L R + H
Sbjct: 321 K------------LLGVLDKFKGDKVIVFCNMKRTCDDLEYVLNR-----SGYGAAALHG 363
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + +F + R R L+ T+ A RG+D V V+ FDFP +YV R+
Sbjct: 364 DKSQNIRDKVLDDFRSGR----RPILIATEVAGRGLDVNDVKLVINFDFPGTCEDYVHRI 419
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
GRTARG G + F A+ ++ R+ + VPS E M
Sbjct: 420 GRTARGNTKEGISHTFFTINDKGNARELIRMLREAN--QTVPSDLEDM 465
>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 393
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/379 (33%), Positives = 189/379 (49%), Gaps = 41/379 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ +L + RPS IQ A PP++EGK ++ Q+GSGKT A++LP++Q+
Sbjct: 22 FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 82 LTE-------AGPAPGPRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++++ +GVD+++AT GR + L+ + L L +L +LDE D L DEDF ++ +L
Sbjct: 134 VQSVSDGVDIIVATHGRLLDLVMQADLVLEHLTYLVLDEADRLL-DEDFSASMTALTPYF 192
Query: 450 P-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ----E 504
P Q +F +ATLP + + +V P R+ E F + E
Sbjct: 193 PDQPPQTVFCSATLPEPVMDLA------KRVTRNPV--RVEIAAESFTPKNIRQRAIFVE 244
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
D PET + LL+ E ++IVF T + L+R + +RV
Sbjct: 245 KDDKPETV-----ARLLKHFE----GRSIVFARTKNTVDALAKTLRRHN-----LRVETL 290
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + F R LV TD ASRG+D VD V+ D P P YV
Sbjct: 291 HGDRTQGARNKALDLFRQGRIP----VLVTTDIASRGLDIPDVDLVINMDMPETPEAYVH 346
Query: 625 RVGRTARGAGGTGKAFIFV 643
R+GRTAR AG G AF +
Sbjct: 347 RIGRTAR-AGRKGVAFSLI 364
>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
Length = 482
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|349685699|ref|ZP_08896841.1| DNA/RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 525
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 202/426 (47%), Gaps = 44/426 (10%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS 307
PTD P + ++ F ELG S+ + +++ + P+ IQA A P V+ G+
Sbjct: 31 PTDTPAPADTAEQE----AQPLFSELGLSEPIQQAIDEMGYRHPTPIQAQAIPYVLMGRD 86
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
+ Q+G+GKT ++ LP++ E L G S++ + PR +IL PT ELA QV N +
Sbjct: 87 VLGVAQTGTGKTASFTLPML-----EILSG-SRARARMPRSLILEPTRELALQVAENFVN 140
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
K + ++ GG Q E L GVDVLIATPGR + L + G L L R ++D
Sbjct: 141 YGKH-LKLTHALLIGGESMAEQKEVLNRGVDVLIATPGRLIDLFERGGLLLTQTRLLVID 199
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG 484
E D + D F ++ +++ Q +F +AT+ EI +L ++F P V P
Sbjct: 200 EADRML-DMGFIPDIEKIVAMLSPLRQTMFFSATMAPEI-RRLADMFLRNPKEITVSRPS 257
Query: 485 --MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTC 542
I GL +VD K+ AL +L+ S + IVFCN+
Sbjct: 258 SVASTIETGLA--IVDAK--------------EKRRALRKLLRASDMQNAIVFCNR---K 298
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
R V+ + K + P H L Q R + ++ F + K LVC+D A+RGI
Sbjct: 299 RDVDVLCKSLVKHG--FSAGPLHGDLAQSLRFSTLEAFKSGELK----ILVCSDIAARGI 352
Query: 603 DFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
D G+ HV FD P +YV R+GRT R AG TG A+ + +L I + K
Sbjct: 353 DIGGLSHVFNFDVPFHAEDYVHRIGRTGR-AGRTGHAYTLATPDEEALVMAIEKLTGKPI 411
Query: 663 PLHDVP 668
P ++P
Sbjct: 412 PRIEIP 417
>gi|379725028|ref|YP_005317159.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386727777|ref|YP_006194103.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|378573700|gb|AFC34010.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384094902|gb|AFH66338.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 422
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 203/396 (51%), Gaps = 27/396 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +I++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFQQLQLIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ C R V+ GG Q+
Sbjct: 62 LLSTQQGRPNGKRVI---RSLILTPTRELAIQISDNAKAYG-CFTNLRYGVIVGGVSQRP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++G+D+LIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 118 QEQLLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDEADRML-DMGFIHDMKRIIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q LF +AT+P EI LV ++ P I+P V + ++
Sbjct: 177 LPVKRQTLFFSATMPPEI-TSLVN-----SLLKNPVKIEITP------VSSTAERIKQML 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK L+ L++ ++ +VF T + +++ + + + + H
Sbjct: 225 YYVDKPNKLLLLIDLLQDKSIASALVFTR---TKHGADRVVRGLTKAKITAQAI--HGDK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R A + F + ++ LV TD A+RGID + HV+ ++ P P YV R+GR
Sbjct: 280 SQNARQAALNNFKSGATR----LLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
T R AG +G A F +++ + I + ++ P+
Sbjct: 336 TGR-AGLSGIAISFCENEEIPYLKDIEKLTKQKIPV 370
>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
Length = 567
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/416 (29%), Positives = 201/416 (48%), Gaps = 36/416 (8%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+++H S GD ++F+ +G +++ ++R F P+ IQA A+P + G+ +
Sbjct: 108 RRQHDISVQGDHVPEPLQTFESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVA 167
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKT +LLP + +Q K P +++LAPT ELA Q+ + +
Sbjct: 168 IAKTGSGKTCGFLLPGML-----HIQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGR 222
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
R+ V GG + QL +LQ GV ++IATPGR ++ G ++L + +LDE D
Sbjct: 223 SS-GIRNTCVYGGAPKGPQLRDLQYGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEAD 281
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP 490
+ D FE +Q ++ + P Q LF +AT P E+ + + V+ +H
Sbjct: 282 RML-DMGFEPQIQRIVRTLPRQRQTLFFSATWPREVKHIA------SQFVVNQTVHVFIG 334
Query: 491 GLEEFLVDCSGDQESDKTPETAFLN----KKSALLQLIE-KSPVSKTIVFCNKIVTCRKV 545
G+EE LV T + +N K + L ++I K P ++ I+FC C ++
Sbjct: 335 GVEEKLV-----ANKSITQYVSVVNGMHEKFAELAKIIRAKPPGTRIIIFCTTKRMCDQL 389
Query: 546 ENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFA 605
+ R R H Q R ++ F R+ LV TD A+RG+D
Sbjct: 390 SYQMGR------EFRSAAIHGDKKQSERDYVLQAFKDGRTP----ILVATDVAARGLDIP 439
Query: 606 GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG 661
V VV FDFP +Y+ R+GRT R AG TG+++ F+ + A+ +M+ R+
Sbjct: 440 NVAAVVNFDFPTGTEDYIHRIGRTGR-AGATGESYTFMSQEDAKHARDLMQVMREA 494
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
Length = 482
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDTLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++ ++ R + +P+ IQA A P ++G+ +L+ Q+GSGKT A++LP++Q
Sbjct: 4 TFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L E + S PR +I+ PT ELA QV + S+ S+ + GG +
Sbjct: 64 QLAAEP------TKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GV +++ATPGR + ++EG L L +R +LDE D + D F + ++I
Sbjct: 118 QIRALKKGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRML-DMGFSDDMHAIIKQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDC--KVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q + +AT + K+ F K+++ P I E + + DQ
Sbjct: 177 CPQNRQTIMSSATWDGNV-GKIAAGFTHNAEKIIIAPETSHI-----EEISYFTDDQA-- 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+K + L +L+ V++ IVF T V + L E + H
Sbjct: 229 --------HKNAVLDRLLADEAVTQCIVFTATKSTTETVAHHL-----YENGFQAQFLHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q+ R ++ F + LV TD A+RGID + HV+ +D PR +YV R+
Sbjct: 276 DLQQQKRNRIIERFRNGQIN----VLVATDIAARGIDIPAISHVINYDLPRQSEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GR+ R AG +G A V
Sbjct: 332 GRSGR-AGRSGVALNLV 347
>gi|337752121|ref|YP_004646283.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336303310|gb|AEI46413.1| DEAD/DEAH box helicase domain protein [Paenibacillus mucilaginosus
KNP414]
Length = 422
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/396 (29%), Positives = 203/396 (51%), Gaps = 27/396 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +I++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFQQLELIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ C R V+ GG Q+
Sbjct: 62 LLSTQQGRPNGKRVI---RSLILTPTRELAIQISDNAKAYG-CFTNLRYGVIVGGVSQRP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++G+D+LIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 118 QEQLLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDEADRML-DMGFIHDMKRIIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q LF +AT+P EI LV ++ P I+P V + ++
Sbjct: 177 LPVKRQTLFFSATMPPEI-TSLVN-----SLLKNPVKIEITP------VSSTAERIKQML 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK L+ L++ ++ +VF T + +++ + + + + H
Sbjct: 225 YYVDKPNKLLLLIDLLQDKSIASALVFTR---TKHGADRVVRGLTKAKITAQAI--HGDK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R A + F + ++ LV TD A+RGID + HV+ ++ P P YV R+GR
Sbjct: 280 SQNARQAALNNFKSGATR----LLVATDIAARGIDIEELSHVINYNLPNIPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
T R AG +G A F +++ + I + ++ P+
Sbjct: 336 TGR-AGLSGIAISFCENEEIPYLKDIEKLTKQKIPV 370
>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
Length = 435
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
Length = 482
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
Length = 419
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 187/382 (48%), Gaps = 36/382 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++ +++ + +P+ IQ A PP ++G+ + Q+G+GKT A++LP++
Sbjct: 2 TFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPMLC 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV + S +K G + V + GG
Sbjct: 62 RLEQ------GRARARMPRTLILEPTRELAAQVEA---SFAKYGANHKLNVALLIGGMAF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + G L L N+ ++DE D + D F ++ +
Sbjct: 113 GDQEAKIMRGADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI +L E F V + + + + LV G E
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-TRLTEAFLHNPVRIEVARASSTAATIRQALVATHGHAE- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSK-TIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K+ L +L+ + K I+FCN+ R V + + D+ L
Sbjct: 230 ----------KRETLRRLLRGAENFKNAIIFCNR---KRDVAILHRSLDKHGFSAGAL-- 274
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H +DQ R+A++ F LVC+D A+RG+D V HV FD P +YV
Sbjct: 275 HGDMDQPARMASLDAFKNGDVA----LLVCSDVAARGLDIPDVSHVFNFDVPTHSEDYVH 330
Query: 625 RVGRTARGAGGTGKAFIFVVGK 646
R+GRT R AG +G A V G+
Sbjct: 331 RIGRTGR-AGRSGTAVTLVTGE 351
>gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 482
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 191/381 (50%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 188/375 (50%), Gaps = 33/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++ ++ Q + +P+ IQ A P V+ G+ + A Q+G+GKT A++LP+++R
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L++ S S + P R ++L+PT ELA Q+ N ++ +K +P R+ V GG
Sbjct: 63 LKK--FANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKY-LPLRATTVFGGVNMDP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L+ GV++LIATPGR + I++ +QL + +LDE D + D F ++ ++
Sbjct: 120 QTQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRML-DMGFIQDIRKIMGM 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT P+ K + MH +E + + DQ
Sbjct: 179 LPKERQTLLFSATFA-----------PEIKRLAADFMH-APQTVEVARQNATNDQVEQLV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPFHA 566
+ K+ L LI +S+ IVFC ++ ++ LKR D + H
Sbjct: 227 FQVDNFKKRQLLAHLIRSREMSQVIVFCKTKISADQLARDLKRDGLDAEA-------IHG 279
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q RL + F KE +L LV TD A+RG+D + + +VV F+ P P +YV R
Sbjct: 280 DKTQGARLETLAGF-----KEGKLRVLVATDVAARGLDISELPYVVNFELPTSPEDYVHR 334
Query: 626 VGRTARGAGGTGKAF 640
+GRT R AG G A
Sbjct: 335 IGRTGR-AGAKGIAI 348
>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 500
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 190/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 11 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 71 MLMKQADRPANRTT----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 125
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G DVL+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 126 QQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 184
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 185 VPAKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 240
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P ++IVF T E + K + +V H
Sbjct: 241 KTD----LLKKS-----LNENPDGRSIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 286
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 287 NKSQGQRERALKGFKDGEIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 342
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 343 GRTAR-AGRDGIAIAFCAPDETRLLHDI 369
>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660243|sp|Q6CIV2.1|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
Length = 554
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 195/408 (47%), Gaps = 40/408 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF E G Y+++ +K++ F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 113 RSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 172
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFR 385
+ + L S P V++LAPT ELA Q+ C SK G R+ V GG
Sbjct: 173 VHINAQPLL----SPGDGPIVLVLAPTRELAVQIQKEC---SKFGASSRIRNTCVYGGVP 225
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ +LQ GV++LIATPGR + +++ G L + +LDE D + D FE ++ +
Sbjct: 226 KSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKI 284
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG----PGMHRISPGLEEFLVDCS 500
+ Q L +AT P E+ + D +V +G H I+ + E L D
Sbjct: 285 VDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQ-IVEVLTDFE 343
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
K ETA ++ SK I+F + TC ++ + L +
Sbjct: 344 KRDRLAKHLETASQDQD------------SKIIIFASTKRTCDEITSYL-----RTEGWP 386
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
L H Q R + EF + RS +V TD A+RGID G+++V+ +D P +
Sbjct: 387 ALAIHGDKAQNERDWVLAEFRSGRSP----IMVATDVAARGIDVKGINYVINYDMPGNIE 442
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
+YV R+GRT R AG TG A F SL +++ R+ D+P
Sbjct: 443 DYVHRIGRTGR-AGSTGTAISFFTEGNKSLGAALIKIMREAK--QDIP 487
>gi|422396730|ref|ZP_16476761.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
Length = 564
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 54 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGARVLTVYGGVGYE 172
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 231
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 283
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 284 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 334
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 335 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 390
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 391 IGRTGR-AGAKGLAVTLV 407
>gi|419421475|ref|ZP_13961703.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|379977966|gb|EIA11291.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
Length = 560
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGARVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|343494207|ref|ZP_08732476.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
gi|342825408|gb|EGU59900.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
Length = 416
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 191/375 (50%), Gaps = 31/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + +++ + P+ IQ A P ++GK+ I A Q+GSGKT +++LP+++
Sbjct: 3 FSKLGLSRPITQAISELGYETPTPIQEQAIPVALKGKNIIAAAQTGSGKTASFVLPILET 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q E Q + R +ILAPT ELA QV + ++ +K + +S+ + GG Q
Sbjct: 63 LSQSETQKKKRF-----RALILAPTRELAVQVDKSIKAYAKH-LNLKSLAIYGGVDDGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EG+D+L+ATPGR + L + ++ +LDE D + D F + ++
Sbjct: 117 KKKLIEGIDILVATPGRLLDLFTQRAVRFDEAEILVLDEADKML-DMGFIEDINKIVERL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +ATL ++ PD + + P ++++LV D
Sbjct: 176 PEDVQNLLFSATLSRKVRELAKTAVPDPVEISLHLQNAEKPKIDQWLVTVDKD------- 228
Query: 510 ETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KKSALL LI ++ +T++F I T ++ + +++ + FH+
Sbjct: 229 ------KKSALLSHLITENNWGQTLIF---IETKHGAAKLVTQLEKRGIKAEA--FHSGR 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R +++F T + K +LV T A+RGID A ++ VV +D P P EYV R+GR
Sbjct: 278 SQGARAQLLEDFKTGKLK----YLVATGVAARGIDIAELNRVVNYDLPFPPDEYVHRIGR 333
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G+A FV
Sbjct: 334 TGR-AGKSGEAISFV 347
>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 453
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/401 (31%), Positives = 194/401 (48%), Gaps = 30/401 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ L S +++++ + P+ IQ A P + GK I + Q+G+GKT A+ LP +Q
Sbjct: 2 SFETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL S PR+++L PT ELA+QV R+ K + RS + GG +
Sbjct: 62 RLSTP-----SPINGKGPRILVLTPTRELANQVTDAVRNYGKF-MRVRSGAILGGMPYRE 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L + VD+++ATPGR + ++ G + L L ILDE D + D F + + ++
Sbjct: 116 QLQLLSQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRML-DMGFSDDVDKIAAA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q L TAT+ ++ KL + V RI ++ S DQ +
Sbjct: 175 APANRQTLLFTATMD-DVMAKLAQRLLKDPV-------RIEIAGQK----TSHDQIEQRL 222
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L K+ +LQ LI ++K I+F T R + + + + L H
Sbjct: 223 HVVDNLQHKNRMLQHLIADGNLTKAIIFS---ATKRDADMLARELHAQGHAAAAL--HGD 277
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R K T R + RL LV TD A+RG+D G+ HV+ FD P+ +YV R+G
Sbjct: 278 MTQNAR---NKTITNMRRGKVRL-LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
RT R AG +G A FV ++ RI + PLH +P
Sbjct: 334 RTGR-AGASGIAISFVSLNDINYLDRIERYTGQTLPLHVIP 373
>gi|418407317|ref|ZP_12980635.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358006461|gb|EHJ98785.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 492
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 190/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTT----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G DVL+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P ++IVF T E + K + +V H
Sbjct: 233 KTD----LLKKS-----LNENPDGRSIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 278
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 279 NKSQGQRERALKGFKDGEIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 334
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 335 GRTAR-AGRDGIAIAFCAPDETRLLHDI 361
>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2083]
gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
HTCC2083]
Length = 495
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 184/378 (48%), Gaps = 26/378 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQ A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N + +K ++ GG K Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +GVDVLIATPGR + ++ G L L ++ ++DE D + D F ++ + +
Sbjct: 118 DRLIDKGVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRML-DMGFIPDIERIFGLT 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + V S +E+ ++ G ++ +
Sbjct: 177 PFTRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGT 236
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K+ AL +LI E + I+FCN+ + V LK++ P H
Sbjct: 237 E-----KRKALRKLIDAEGDACTNAIIFCNRKMDVDVVAKSLKKYG-----YDAAPIHGD 286
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R + F +E L FLV +D A+RG+D V HV FD P +YV R+
Sbjct: 287 LDQSQRTKTLDGF-----REGGLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRI 341
Query: 627 GRTARGAGGTGKAFIFVV 644
GRT R AG GKA + V
Sbjct: 342 GRTGR-AGRDGKAVMICV 358
>gi|363753554|ref|XP_003646993.1| hypothetical protein Ecym_5422 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890629|gb|AET40176.1| hypothetical protein Ecym_5422 [Eremothecium cymbalariae
DBVPG#7215]
Length = 560
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 188/389 (48%), Gaps = 26/389 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F E G +Y+++ +K + F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 123 RTFDEAGFPEYVLKEVKEEGFDKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGI 182
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L S P V++LAPT ELA Q+ C R+ V GG +
Sbjct: 183 VHINAQPL----LSPGDGPIVLVLAPTRELAVQIQKECSKFGHSS-RIRNTCVYGGVPKS 237
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +LQ GV++LIATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 238 QQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVD 296
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q L +AT P E+ + D +V +G S + + + S ++ D
Sbjct: 297 QIRPDRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQIVEVISDFEKRD 356
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ + L + K P SK I+F + TC + + L ++ L H
Sbjct: 357 RLVKH---------LDIASKDPESKIIIFASTKRTCDDITSYL-----RQDGWPALAIHG 402
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q+ R + EF RS +V TD A+RGID G++ V+ +D P + +YV R+
Sbjct: 403 DKQQQERDWVLNEFRCGRSP----IMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRI 458
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
GRT R AG TG A F + +L +++
Sbjct: 459 GRTGR-AGATGTAISFFTEQSKALGAQLI 486
>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
Length = 496
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 194/406 (47%), Gaps = 36/406 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF D +I ++KR + P+ IQA A P V+EG + Q+G+GKT A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + SPR +ILAPT ELA Q+ + + G R+ V+ GG
Sbjct: 62 RLI------TNPARTRSPRTLILAPTRELAEQIFRSTLDFMR-GTRLRATVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDV++A PGR + + +G ++ L +LDE D +F D F ++ ++++
Sbjct: 115 QVRALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMF-DMGFLPDIKRILAA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESD 506
P Q L +AT+P I E D V + ++P +E + S +Q
Sbjct: 174 LPAKRQTLLFSATMPPAISGLAAETLTDPVTVR---IGHLAPLSTVEHAIYPVSHNQ--- 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K LL L+ ++ IVF T + +N+ ++ R + L
Sbjct: 228 ---------KAPLLLHLLGEAGKESVIVFTR---TKHRAKNLAQQLCRSGHKATCL--QG 273
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R M F + + LV TD A+RGID + V HVV FD P Y R+
Sbjct: 274 NLSQRQRQIAMDGF----RRGSFQILVATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRI 329
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
GRT R A G+A FV G+ + + + I +K P +V FE
Sbjct: 330 GRTGR-AERDGQAHTFVTGEDMGMVRAIESHMKKPLPRRNV-EGFE 373
>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
SK187]
gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|365963017|ref|YP_004944583.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365965259|ref|YP_004946824.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365974190|ref|YP_004955749.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407935730|ref|YP_006851372.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|417929824|ref|ZP_12573208.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182]
gi|422387668|ref|ZP_16467780.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
gi|422450923|ref|ZP_16527636.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453794|ref|ZP_16530481.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422475550|ref|ZP_16551997.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|422510319|ref|ZP_16586465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422524064|ref|ZP_16600073.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422532031|ref|ZP_16607977.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422537070|ref|ZP_16612958.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422545096|ref|ZP_16620926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422560680|ref|ZP_16636367.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|422579282|ref|ZP_16654805.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
SK187]
gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|340773947|gb|EGR96439.1| DEAD/DEAH box helicase [Propionibacterium acnes SK182]
gi|365739698|gb|AEW83900.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741940|gb|AEW81634.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365744189|gb|AEW79386.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|407904311|gb|AFU41141.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|456738446|gb|EMF63013.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 560
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|381169049|ref|ZP_09878224.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380681838|emb|CCG43046.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 536
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 122/390 (31%), Positives = 195/390 (50%), Gaps = 33/390 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFEDLGLGPELLKALAEVGYTSPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E+ ++ + PR +ILAPT ELA+Q N + K +++++ GG
Sbjct: 61 -----EILAAGRAKARMPRSLILAPTRELAAQAAENFDNYGKYHRLTKALII-GGESMSD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L GVDVLIATPGR + + + G + L +++ ++DE D + D F ++ ++
Sbjct: 115 QSALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFIPDVERIVGL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATL EI +L + F +M P +SPG + +Q
Sbjct: 174 LPKIRQTLFFSATLGPEI-RRLADAF-----LMNPKEITVSPGTS---TAATVEQHLAVV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
E ++K+ L LI V +FCN+ + LK+ D V H +
Sbjct: 225 EE---IDKRETLRHLIRTENVKNAFIFCNRKRDVDILYRSLKKHD-----FDVCQLHGDM 276
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F + E RL +VC+D A+RGID + V HV FD P +YV R+GR
Sbjct: 277 AQSARGDTLESF---KKGEIRL-MVCSDVAARGIDVSAVSHVFNFDVPIHAEDYVHRIGR 332
Query: 629 TARGAGGTGKAFIFVV---GKQVSLAQRIM 655
T R AG G+AF + GK V ++++
Sbjct: 333 TGR-AGMAGRAFTIAIPDDGKAVVAIEKLI 361
>gi|422392322|ref|ZP_16472392.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
gi|422426148|ref|ZP_16503072.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422433509|ref|ZP_16510377.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436072|ref|ZP_16512929.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|422438394|ref|ZP_16515238.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422444387|ref|ZP_16521181.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422445086|ref|ZP_16521840.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422462176|ref|ZP_16538800.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422478561|ref|ZP_16554980.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422493619|ref|ZP_16569919.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422501646|ref|ZP_16577900.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422516579|ref|ZP_16592688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422522165|ref|ZP_16598195.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422527552|ref|ZP_16603542.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422543216|ref|ZP_16619066.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422548140|ref|ZP_16623956.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550025|ref|ZP_16625825.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
Length = 564
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 54 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 172
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 231
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 283
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 284 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 334
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 335 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 390
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 391 IGRTGR-AGAKGLAVTLV 407
>gi|393720931|ref|ZP_10340858.1| DEAD/DEAH box helicase [Sphingomonas echinoides ATCC 14820]
Length = 480
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 197/409 (48%), Gaps = 40/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +L+ + + P+ IQ + P ++EG + Q+G+GKT A++LP IQ
Sbjct: 2 TFAQLGLAEPLVRALEAKGYTTPTPIQKQSIPILLEGGDLLGIAQTGTGKTAAFVLPSIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT---GGFR 385
+L E + L R+++LAPT ELASQ+ + R K F M V GG
Sbjct: 62 QLVNNEKRVLPTHC----RMLVLAPTRELASQIAESAREYGK----FSKMSVATVFGGTS 113
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+++ GVD+L+ATPGR + LI++ + L L +LDE D + D F AL+ +
Sbjct: 114 INKNRQDMARGVDILVATPGRLLDLIEQRFVSLAMLEILVLDEADQML-DLGFIHALRKI 172
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+P I + D K V + +++F+
Sbjct: 173 VRMLPKQRQTLFFSATMPNAIRELANQFLNDPKTVKVAPTSSTAERVDQFVT-------- 224
Query: 506 DKTPETAFLNK--KSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
FLN+ K ALL L+ V + +VF +V +L +
Sbjct: 225 -------FLNQGEKQALLTILLRDEKVERALVFTRTKHGADRVVKLLG-----ANGIVSN 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + EF + ++K LV TD A+RGID +GV HV F+ P P +Y
Sbjct: 273 AIHGNKSQPQRERALAEFKSGKAK----VLVATDIAARGIDVSGVSHVFNFELPNVPEQY 328
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
V R+GRTAR AG +G A FV + + + I + R + +P F
Sbjct: 329 VHRIGRTAR-AGASGTAISFVADDERTYLRDIEKLTRVKPEMMQLPEGF 376
>gi|402850227|ref|ZP_10898436.1| ATP-dependent RNA helicase [Rhodovulum sp. PH10]
gi|402499526|gb|EJW11229.1| ATP-dependent RNA helicase [Rhodovulum sp. PH10]
Length = 489
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 189/381 (49%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ ++ ++K + P+ IQ A P V+ + + Q+G+GKT A++LP++
Sbjct: 2 SFDQLGLSEKVLAAVKSAGYTSPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV S + GV + V + GG
Sbjct: 62 RLEQ------GRARARMPRTLILEPTRELAAQVEE---SFQQLGVNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L GVDVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 GNQDMKLTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV---VMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF TAT+P EI ++ E F V V P + + LV C G +
Sbjct: 172 KLVPFTRQTLFFTATMPAEI-RRITEQFLHNPVKVEVARPAT--TVDAITQSLVKC-GRE 227
Query: 504 ESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
D K+ L +LI + + IVFCN+ R V + + R + +
Sbjct: 228 AHD---------KREVLRKLIRSAEGLKNAIVFCNR---KRDVATLYRSLLRH--KFSAV 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ +R+A + +F R E + LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQSSRMAALDQF---RKGEVAI-LVASDVAARGLDIPDVSHVFNFDVPHHPDDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG TG A V
Sbjct: 330 VHRIGRTGR-AGRTGTAISIV 349
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 180/380 (47%), Gaps = 28/380 (7%)
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
+ +P+ IQA A P V+ G+ + Q+G+GKT A+ LP++ +L Q G
Sbjct: 21 GYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLAANPQQ----PPRGGA 76
Query: 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
RV++L+PT ELASQ+ + RSL + VV GG Q+ LQ G+DVL+ATPGR
Sbjct: 77 RVLVLSPTRELASQIAESFRSLG-SEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGR 135
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
+ + G+ L +LDEVD + D F A+ ++ + P Q LF +AT+P EI
Sbjct: 136 LVDHLDSGVAHLGKTEFFVLDEVDQML-DLGFVKAIHRIVKTLPQRRQNLFFSATMPTEI 194
Query: 467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
++ + P ++P V + D+ + K+ L+ L+
Sbjct: 195 AKLAADLLKN------PAQVSVTP------VAKTADRVEQQVLFVETHRKRDILVDLLAD 242
Query: 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586
+ +++TI+F T R + + + + V H Q R ++ F R +
Sbjct: 243 AKMARTIIFTR---TKRGADKVAQHLE--VCGVSAAAIHGNKSQSQRERSLASFRAGRVR 297
Query: 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646
LV TD A+RGID GV HVV FD P P YV R+GRTAR AG G A G
Sbjct: 298 A----LVATDIAARGIDVDGVTHVVNFDLPEVPEAYVHRIGRTAR-AGAEGVAISLCDGA 352
Query: 647 QVSLAQRIMERNRKGHPLHD 666
+ L + I R P D
Sbjct: 353 ERDLLRNIERLTRLRLPTED 372
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 178/368 (48%), Gaps = 32/368 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ +++++K + F+ PS IQ P V+EG+ + Q+G+GKT A+ LP+
Sbjct: 2 NFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPI-- 59
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LQ LSK R +I+ PT ELA Q+ + K + V+ GG Q
Sbjct: 60 ------LQSLSKGEGSGVRALIITPTRELAIQIYESFECFGKY-TSLKQSVIYGGVGQSL 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ G+D+LIATPGR LI +G + L + +LDE D + D F ++ +I
Sbjct: 113 QVNSLKAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQML-DMGFLNDIKKVIKL 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT+P EI + + + P + +ISP V + D
Sbjct: 172 LPKTRQTLLFSATMPKEIESLATNLLNN------PEIIKISP------VTSTVDSIEQSV 219
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
LNK S L LI++ +S+ +VF +V + L + +V+ H
Sbjct: 220 YFVDRLNKISLLTSLIKEHKMSRVLVFTKTKHGADRVADKLNK-----AKVKTQAIHGGK 274
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + +F + K LV TD A+RGID + + +VV +D P Y+ R+GR
Sbjct: 275 GQNARQTALSDFKEGKIK----VLVATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGR 330
Query: 629 TAR-GAGG 635
T R G GG
Sbjct: 331 TGRAGLGG 338
>gi|422495471|ref|ZP_16571758.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
Length = 560
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|422427756|ref|ZP_16504667.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422530226|ref|ZP_16606190.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422539124|ref|ZP_16614997.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|422571758|ref|ZP_16647339.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
Length = 560
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|384262623|ref|YP_005417810.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
gi|378403724|emb|CCG08840.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
Length = 506
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 194/376 (51%), Gaps = 40/376 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S +++++ + P+ IQA A P V +G+ + Q+G+GKT ++ LP+I
Sbjct: 59 FADLGLSPETLKAIEEVGYTTPTPIQAQAIPVVQQGRDVLGIAQTGTGKTASFTLPMI-- 116
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++ ++ + PR +ILAPT ELASQV N K ++++ GG Q
Sbjct: 117 ----DILASGRAKARMPRSLILAPTRELASQVADNFTLYGKYQKLSMALLI-GGESMGEQ 171
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ ++S
Sbjct: 172 QKALDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRML-DMGFIPDVERIVSLL 230
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+ EI +L + F +M P R+ Q++ T
Sbjct: 231 PKMRQTLFFSATMDKEI-RRLADAF-----LMNPKEVRVE-----------QTQKAADTV 273
Query: 510 ETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
E + +K+ +L L+ + V+ +FCN+ ++ +IL R K +
Sbjct: 274 EQGLVVVSHHDKRESLRHLLRREDVANAFIFCNR----KRDVDILHRSLSKHG-FDAVAL 328
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H + Q R +++F + EARL LVC+D A+RGID + V HV FD P P +Y+
Sbjct: 329 HGDMPQYVRTERLEQF---KKGEARL-LVCSDVAARGIDISDVSHVYNFDVPTHPEDYIH 384
Query: 625 RVGRTARGAGGTGKAF 640
R+GRT R AG GKA+
Sbjct: 385 RIGRTGR-AGRLGKAY 399
>gi|342213561|ref|ZP_08706286.1| DEAD/DEAH box helicase [Propionibacterium sp. CC003-HC2]
gi|340769105|gb|EGR91630.1| DEAD/DEAH box helicase [Propionibacterium sp. CC003-HC2]
Length = 560
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 399
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 192/377 (50%), Gaps = 32/377 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK + +I+ + + + +P+ IQ P ++ G + Q+G+GKT A+ LP+I +
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +KST R +IL PT ELASQ++ N S G+ ++ VV GG ++ Q
Sbjct: 64 FGRNKIDIKAKST----RSLILTPTRELASQIMQNIDDYSD-GLGLKTKVVYGGVGRQAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++++ G+D+L+ATPGR + LI+ G + L +LDE D + D F +QS+IS
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTML-DMGFFKDVQSIISKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ--ESDK 507
P + Q L +AT+P EI E+ + ++ P +I+ E +D DK
Sbjct: 178 PKSRQTLLFSATMPAEI-----EILAEA-ILTDPTKIQITA--ETVTIDLVNQSVYHLDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ NK L ++ K+ K ++FC T + I+K ++ + H+
Sbjct: 230 S------NKVPLLFNILTKADYEKVLIFCK---TKYGADIIVKALEK--ASITAASLHSG 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R ++ F S + LV TD A+RGID + V+ ++ P DP Y+ R+G
Sbjct: 279 KTQAVREEALQNFKDSTLR----VLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIG 334
Query: 628 RTARGAGGTGKAFIFVV 644
RTAR AG +G A F V
Sbjct: 335 RTAR-AGKSGMAISFAV 350
>gi|392968857|ref|ZP_10334273.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387843219|emb|CCH56327.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 537
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 131/415 (31%), Positives = 202/415 (48%), Gaps = 38/415 (9%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F SF++ + ++ ++ + +P+ IQ P ++ + Q+G+GKT AY+
Sbjct: 62 FMDITSFEDFALNRQLLNAIADLGYDQPTPIQQKTIPLILGNHDVLGIAQTGTGKTAAYV 121
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LP++ +++ QG+ PR +ILAPT EL Q+ L+K R + + GG
Sbjct: 122 LPLLMKIKYA--QGVR------PRALILAPTRELVMQINEAIAQLAKY-TDLRHVALYGG 172
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
KTQ+E LQ+GVD+++ATPGRFM L + G L ++ +LDE D + D F ++
Sbjct: 173 LGPKTQIETLQKGVDIIVATPGRFMDLYRLGELPTKEIKTMVLDEADKMM-DMGFMPQIR 231
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
S++ P Q L +AT + + VE + + P ++P + D
Sbjct: 232 SILEVIPTKRQNLLFSAT-----FGERVERL-SGEFLEAPIRVEVTPQA------STADM 279
Query: 504 ESDKTPETA-FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK---ETRV 559
S E F K + L LI + IVF T + ENI K RK + R+
Sbjct: 280 VSQVIYEVPNFRTKINLLGYLINDEAFQRVIVFAR---TKQTAENIYKFLSRKVVEDDRI 336
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRD 618
+V+ HA Q TR+ M+ F KE + LV TD A+RGID A V HV+ FD P
Sbjct: 337 KVI--HANKGQNTRINAMEAF-----KEGNIRVLVATDVAARGIDVAEVSHVINFDVPLI 389
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
+YV R+GRT R A TG+A FV + ++I + R P +P+ E+
Sbjct: 390 YEDYVHRIGRTGR-ANKTGQAITFVTMSEEYHVKKIEKIIRMSVPHEPIPADVEI 443
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 126/406 (31%), Positives = 194/406 (47%), Gaps = 36/406 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF D +I ++KR + P+ IQA A P V+EG+ + Q+G+GKT A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGRDLMGLAQTGTGKTAAFLLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + SPR +ILAPT ELA Q+ + + G R+ V+ GG
Sbjct: 62 RLL------TTPARTRSPRTLILAPTRELAEQIFRSTLDFMR-GTRLRATVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDV++A PGR + + +G ++ L +LDE D +F D F ++ ++++
Sbjct: 115 QVRALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMF-DMGFLPDIKRILAA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESD 506
P Q L +AT+P I E D V + ++P +E + S +Q
Sbjct: 174 LPAKRQTLLFSATMPPAISGLAGETLTDPVTVR---IGHLAPLSTVEHAIYPVSHNQ--- 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K LL L+ ++ IVF T + +N+ ++ R + L
Sbjct: 228 ---------KAPLLLHLLGEAGKESVIVFTR---TKHRAKNLAQQLCRSGHKATCL--QG 273
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R M F + + LV TD A+RGID + V HVV FD P Y R+
Sbjct: 274 NLSQRQRQIAMDGF----RRGSFQILVATDIAARGIDVSQVAHVVNFDIPDTAEAYTHRI 329
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
GRT R A G+A FV G+ + + + I +K P V FE
Sbjct: 330 GRTGR-AERDGQAHTFVTGEDMGMVRAIESHMKKPLPRRSV-EGFE 373
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 184/387 (47%), Gaps = 31/387 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG S ++++++ + + +PS IQ A P ++EGK + + Q+G+GKT + LPV+Q
Sbjct: 2 TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K P R ++L PT ELA+QV N R SK V +S VV GG K
Sbjct: 62 YLVE------TKHPKYRPLRALVLTPTRELAAQVHDNVREYSKY-VDIKSTVVFGGVNAK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + L + ILDE D + D F + +IS
Sbjct: 115 PQIATLRSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRML-DMGFVRDINKIIS 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT +I + G+ R +E + + + + K
Sbjct: 174 FMPAKRQNLMFSATFSNDIKK------------LASGILRDPVSVETAPQNSTAKKVTHK 221
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K ++LI++ ++ +VF K+ L + D + H
Sbjct: 222 VYKVDKNKKTEFTIKLIKEGNWNQVLVFTRTKHGANKLTEKLIKAD-----ISAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F K LV TD A+RG+D + HVV F+ P P +YV R+G
Sbjct: 277 KSQGARTKALKNFKDGSIK----ILVATDIAARGLDIPLLPHVVNFELPNVPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG G+A V ++ I
Sbjct: 333 RTGR-AGAAGEAISLVCSEESEYQSEI 358
>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 622
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 198/407 (48%), Gaps = 39/407 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP
Sbjct: 4 SERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ ++ ++ P++++LAPT ELA QV S +K F + + GG
Sbjct: 64 LLNKV----------TSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQS 113
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QL L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ +
Sbjct: 114 MHQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWI 172
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P +I + D + H +E+ V S
Sbjct: 173 LEHTPEQRQLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQH--- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK AL++++E I+F +C ++ L+ + P H
Sbjct: 230 ---------NKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASS-----PLH 275
Query: 566 AALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D YV
Sbjct: 276 GDMNQQAR-----ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVH 330
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER--NRKGHPLHDVPS 669
R+GRT R AG TG A +FV +++ + R +ER N + P+ VPS
Sbjct: 331 RIGRTGR-AGRTGMAILFVTSREMRML-RTIERATNSRISPMK-VPS 374
>gi|402217906|gb|EJT97985.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 606
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 193/384 (50%), Gaps = 28/384 (7%)
Query: 269 SFKELGC-SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+F+EL C + +L++ F P+ IQA +P V+ GK I Q+GSGKTL+Y+LP I
Sbjct: 138 TFEELECIPQELHNTLRKTGFPTPTPIQAQTWPIVLSGKDLIGVAQTGSGKTLSYILPAI 197
Query: 328 QRLRQEELQGLSKSTSG----SPRVVILAPTAELASQVLSNC-RSLSKCGVPFRSMVVTG 382
LR + +STS SP +ILAPT ELA+Q+ + + + C + + V G
Sbjct: 198 AHLRAQPSWRPGQSTSSGFGISPSALILAPTRELATQIAAEAGKYMLSCRMAV--VPVYG 255
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G ++ Q+ NL+ G DV++ATPGR LI+ IL L + ++DE D + D FE +
Sbjct: 256 GADKRMQMNNLRRGADVVVATPGRLNDLIQSNILNLSRISYLVMDEADRML-DMGFEPQI 314
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSG 501
+ ++ P Q L +AT P E+ L F + PG H ++ G E + +
Sbjct: 315 RQIVEHLPPNRQTLLWSATWPKEV-QSLARDF------INPGGHVHVTVGSHELEANKNV 367
Query: 502 DQESDKTPETAF-LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
Q ++ + + ++ L++++ +K I+F +T + L +
Sbjct: 368 LQRTEHVESSGKPMALQNHLVRILTAQKQAKIIIFVGTKLTADMLHQGLSQGGYP----- 422
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
V+ H Q+ R ++ F +++ LV TD +RG+D V V+ +D P +P
Sbjct: 423 VVTIHGDKTQDARDRSIGHFRAGKAQ----VLVATDVCARGLDVKDVHTVINYDIPNNPE 478
Query: 621 EYVRRVGRTARGAGGTGKAFIFVV 644
+YV R+GRT R AG G+A F+
Sbjct: 479 DYVHRIGRTGR-AGSKGEALSFLT 501
>gi|428183253|gb|EKX52111.1| hypothetical protein GUITHDRAFT_65410, partial [Guillardia theta
CCMP2712]
Length = 442
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 126/421 (29%), Positives = 197/421 (46%), Gaps = 43/421 (10%)
Query: 249 TDCPKQ------RHKYSADGD----FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
+ CPK+ H+ + G FF+ F+EL + + L R F PS IQA
Sbjct: 38 SSCPKEVVEWRKSHEITVAGGCPDPFFT---FRELPVPQVLQDQLLRAGFSGPSVIQAQT 94
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
+P ++G+ I ++GSGKTL +L+P + + L K+ P +++LAPT ELA
Sbjct: 95 WPAALKGRDVIGVAKTGSGKTLGFLVPGFMHIMNDGL----KNPRMGPLILVLAPTRELA 150
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+Q+ C C + RS V GG + QL L+ G ++IATPGR +++G++ L
Sbjct: 151 TQIQEECIKFGSC-IHIRSCCVYGGAPKGPQLRELRSGAHIVIATPGRLNDFLEQGMINL 209
Query: 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-- 476
+ + DE D + D FE ++ ++ P Q LF TAT P E+ +L F D
Sbjct: 210 QQVSYLVFDEADRML-DMGFEPQIRKILDRIPGKRQTLFYTATWPKEV-RRLASDFLDKP 267
Query: 477 CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVF 535
C V +G + LV + K + F K L +I V S+ I+F
Sbjct: 268 CIVYIGD---------TDTLVANKDVTQVIKVIDDRFGEKDMILQDIIRGEGVGSRIIIF 318
Query: 536 CNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT 595
C+ C ++E L R V H DQ R + +F + ++ T
Sbjct: 319 CSTKRMCDQLERNLSRM------VPCAAIHGDKDQGQRTRILNDFKAGQC----CVMIAT 368
Query: 596 DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
D A+RG+D V V+ ++FP + +Y+ R+GRT R AG G A+ F K S A ++
Sbjct: 369 DVAARGLDIKEVKAVINYEFPSNTEDYIHRIGRTGR-AGAKGTAYTFFTKKDASKASSLI 427
Query: 656 E 656
+
Sbjct: 428 K 428
>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 452
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 188/395 (47%), Gaps = 44/395 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 45 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 104
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L++ GVP V++GG
Sbjct: 105 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAR-GVPTEIAVLSGGKNMNR 156
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 157 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 215
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 216 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 258
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E + +K L L+++ + I+FC T R + + ++ E
Sbjct: 259 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCR---TKRGTDRLHRKLS-HEYGSACGA 314
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R +++ K FLV TD RGID + + H+V FD P+D +YV
Sbjct: 315 IHGDLQQRERDRVLQKLRDGNLK----FLVATDVVGRGIDISTISHIVNFDVPQDCDDYV 370
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQ----VSLAQRI 654
RVGRT R G G A+ FVV + S+ QRI
Sbjct: 371 HRVGRTGR-MGRDGVAYTFVVPGEGDILTSIEQRI 404
>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
Length = 432
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 188/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I++L++Q P+ IQ + P V +G I Q+G+GKTLA+LLPV+
Sbjct: 2 KSFKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPVL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + + + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQISDEAKEIGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LI
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE IVFCNK + I ++ + + H
Sbjct: 231 ------------LIKMIEDDNPFLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D PRD Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + S +RI
Sbjct: 330 RTGR-AGNSGVAVTFATPQDESWLRRI 355
>gi|421614245|ref|ZP_16055309.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408494963|gb|EKJ99557.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 449
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 188/395 (47%), Gaps = 44/395 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 42 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 101
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L++ GVP V++GG
Sbjct: 102 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAR-GVPTEIAVLSGGKNMNR 153
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 154 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 212
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 213 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 255
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E + +K L L+++ + I+FC T R + + ++ E
Sbjct: 256 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCR---TKRGTDRLHRKLS-HEYGSACGA 311
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R +++ K FLV TD RGID + + H+V FD P+D +YV
Sbjct: 312 IHGDLQQRERDRVLQKLRDGNLK----FLVATDVVGRGIDISTISHIVNFDVPQDCDDYV 367
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQ----VSLAQRI 654
RVGRT R G G A+ FVV + S+ QRI
Sbjct: 368 HRVGRTGR-MGRDGVAYTFVVPGEGDILTSIEQRI 401
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 193/397 (48%), Gaps = 38/397 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTKLGLSAPILKAIEEQGYTEPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L L + S R ++L PT ELA+QV + ++ + +P +S VV GG +
Sbjct: 62 KLSAGPL-----AKSNQVRALVLTPTRELAAQVAESVKNYGQH-LPLKSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G DVLIATPGR + L + L+ L ILDE D + D F ++ +++
Sbjct: 116 QMMALRRGADVLIATPGRLLDLYNQNALKFDQLEVLILDEADRML-DMGFIHDIKKVLAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + + +E++L Q+ D
Sbjct: 175 LPKKRQNLLFSATFSPEIRDLAKGLVNNPVEISVTPRNATAKSVEQWLHPVDKKQKID-- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L+ LI + +VF T I K+ + + +R H
Sbjct: 233 ----------LLIDLIADGQWQQALVFSR---TKHGANKITKQLE--DAGIRASAIHGNK 277
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F KE R+ LV TD A+RGID + HVV FD P +YV R+G
Sbjct: 278 SQGARTRALADF-----KEGRIRILVATDIAARGIDIEELPHVVNFDLPDVAEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVS-------LAQRIMER 657
RT R A TG+A V ++ L Q+++ER
Sbjct: 333 RTGR-ANATGQAISLVSADELEQLKAIERLTQKLIER 368
>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 560
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 126/396 (31%), Positives = 194/396 (48%), Gaps = 44/396 (11%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+R F++LG S+ ++ + ++ P+ IQ A P V+ G+ + Q+G+GKT +++LP
Sbjct: 103 TRAVFEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLP 162
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGG 383
++ ++ S++ + PR +IL PT ELA QV N K G + ++ GG
Sbjct: 163 MM------DILAGSRAKARMPRSLILEPTRELALQVAEN---FVKYGTHMKLNHALLIGG 213
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L +GVDVLIATPGR + L + G + L + + ++DE D + D F ++
Sbjct: 214 ESMSDQRDVLDKGVDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRML-DMGFIPDVE 272
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG--MHRISPGLEEFLVD 498
++S P Q LF +AT+ EI KL + F P V P I+ GL F+
Sbjct: 273 RIVSLLPPLRQTLFFSATMAPEI-RKLADAFLQNPKTISVSAPASVATTITAGLA-FV-- 328
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
PE +K+ AL +LI V ++FCN+ R V+ + K + +
Sbjct: 329 ---------QPE----DKRRALRRLIRSQDVQNALIFCNR---KRDVDILHKSLSKHGFK 372
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
L H L Q R A +++F + LVC+D A+RGID G+ HV FD P
Sbjct: 373 AGAL--HGDLPQSVRFATLEKFKAGELQ----LLVCSDVAARGIDIGGLSHVYNFDVPFR 426
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+YV R+GRT R AG G A+ V L I
Sbjct: 427 DEDYVHRIGRTGR-AGREGHAYTIATADDVKLVAAI 461
>gi|422502002|ref|ZP_16578247.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
Length = 630
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L + R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 188/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 35 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 94
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 95 IIQRLLPH------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVV 147
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q + L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 148 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 206
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI + + + + + + + + + +
Sbjct: 207 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA 266
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
E DKT A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 267 ---EGDKT---------GAVVQLIRERNLKQVIVFCNSKIGASRLARSLERDGVVATAI- 313
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 314 ----HGDRSQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAE 365
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 366 DYVHRIGRTGR-AGASGDAL 384
>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 210/452 (46%), Gaps = 52/452 (11%)
Query: 231 IDRGWRSGGSIHNLQYEPTD-CPKQRHKYS----------ADGDFFSRK----------- 268
DR ++G ++ N+++EP D P +++ Y +D D + K
Sbjct: 48 FDRQSQNGKNLRNVKWEPEDLTPFEKNFYQPSAGLMGLSVSDIDSYLDKHQITLKGRDVP 107
Query: 269 ----SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F++ G Y++E LKRQ F +P+ IQA P + G+ + Q+GSGKTLAY++
Sbjct: 108 RPSMEFEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVV 167
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P + ++ Q + G P +ILAPT ELA Q+ V + V GG
Sbjct: 168 PSLVHIQH---QATIRRGDG-PIALILAPTRELAQQIQQVATDFGSR-VSANNTCVFGGA 222
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++
Sbjct: 223 PKGPQIRDLERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRML-DMGFEPQIRK 281
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
++ Q L +AT P E+ N L E F + + G +S +VD D
Sbjct: 282 IMGQIRPDRQVLMWSATWPKEVRN-LAEEFLADYIQINIGSLNLSANHNILQIVDVCEDY 340
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D+ K LL I P +KTI+F + T R+V++I + +R R +
Sbjct: 341 EKDQ--------KLMKLLTEISAEPDTKTIIF---VETKRRVDDITRIVNRNGW--RAVA 387
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q+ R + F R LV TD A+RG+D V V+ +D+P + +YV
Sbjct: 388 IHGDKSQQERDYVLSTFRNGRQG----ILVATDVAARGLDVEDVKFVINYDYPSNSEDYV 443
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
R+GRT R + TG A+ + A ++
Sbjct: 444 HRIGRTGR-SNNTGTAYTLFTNSNANKANDLI 474
>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
Length = 496
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 198/404 (49%), Gaps = 42/404 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S+ ++ ++K + + P+ IQ A PP + G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILH 61
Query: 329 RLRQEELQGLSKSTS-GSP-RVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
RL G S + G P RV++L PT ELASQ+ + ++ + G+ + V+ GG
Sbjct: 62 RLSA----GRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSW--AVIFGGVG 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q + L+ GVDVLIATPGR + L+ +G++ L +LDE D + D F ++ +
Sbjct: 116 QHAQEQTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRML-DMGFIHDVKRI 174
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
IS+ P Q LF +AT+P EI + + G+ + SP V+ + + +
Sbjct: 175 ISALPPKRQTLFFSATMPPEIQS------------LAQGILK-SP----VRVEVTPESTT 217
Query: 506 DKTPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+T E K+ L+ L+ + + + +VF +V L +R+
Sbjct: 218 AETVEQKMFFVEREQKRHLLVHLLGDASIRRALVFTRTKHGANRVAKHLA-----SSRIS 272
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + F + LV TD A+RGID G+ HV+ FD P P
Sbjct: 273 AEAIHGNKSQNARERALGAFKDGSCR----VLVATDIAARGIDIEGITHVINFDLPNIPE 328
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
YV R+GRT R AG G A F G++ + + I R+ P+
Sbjct: 329 SYVHRIGRTGR-AGAVGTALSFCDGEERAYLRDIERTIRRQVPV 371
>gi|429768994|ref|ZP_19301122.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429188345|gb|EKY29233.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 496
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 178/376 (47%), Gaps = 31/376 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQ A P + G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR V+LAPT ELA QV + ++ G +++ GG Q
Sbjct: 64 LAS------GRARARMPRAVVLAPTRELADQVAESFAKYAR-GTRLNWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L G + L + ++DE D + D F ++ + +
Sbjct: 117 VAALNKGVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D RI D Q + P
Sbjct: 176 PPRRQTLFFSATMPPEITRLTQQFLKDPT--------RIEVARPATTADTI-TQHITRLP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK--RFDRKETRVRVLPFHAA 567
+ K++AL L+E+ V IVFCN+ V L+ FD P H
Sbjct: 227 TSDPKAKRTALRALVERGEVQNGIVFCNRKSEVDIVAKSLQVHGFD-------AAPIHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R+ + +F + K LV +D A+RG+D V HV +D P +YV R+G
Sbjct: 280 LDQSLRMKTLADFRSGALK----LLVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G+AF+ V
Sbjct: 336 RTGR-AGRLGEAFMIV 350
>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
[Encephalitozoon cuniculi GB-M1]
gi|74664187|sp|Q8SRB2.1|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
[Encephalitozoon cuniculi GB-M1]
gi|449328762|gb|AGE95038.1| p68-like protein [Encephalitozoon cuniculi]
Length = 495
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 198/410 (48%), Gaps = 34/410 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E G S ++ SL + F P+ IQ +P + G+ + Q+GSGKTL+++LP +
Sbjct: 87 QKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPAL 146
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQ 386
+ ++ Q L + P V++LAPT EL Q+ CG+ RS V GG
Sbjct: 147 --VHAKDQQPLRRGD--GPIVLVLAPTRELVMQIKKVVDEF--CGMFNLRSTAVYGGASS 200
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ L EG +V+IATPGR + L +G L + +LDE D + D FE L+ +I
Sbjct: 201 QPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRML-DMGFEPQLRKII 259
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ Q L +AT P E+ L E + + +VV+G + + +++ + CSG ++
Sbjct: 260 PKTNANRQTLMWSATWPREV-RGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREK 318
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
DK L+ +++ K IVFCN TC +E +L R +
Sbjct: 319 EDK------------LIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNR-----SGYGAAAL 361
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + +F + R R L+ T+ A RG+D V V+ FDFP +YV
Sbjct: 362 HGDKSQNIRDKVLDDFRSGR----RPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVH 417
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
R+GRTARG G + F + A+ ++ R+ + VPS E M
Sbjct: 418 RIGRTARGNTKEGISHTFFTVGDKANARELIRMLREAN--QTVPSDLEDM 465
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 188/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 69 IIQRLLPH------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTA-LRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q + L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI + + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
E DKT A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 241 ---EGDKT---------GAVVQLIRERNLKQVIVFCNSKIGASRLARSLERDGVVATAI- 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 288 ----HGDRSQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAE 339
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 340 DYVHRIGRTGR-AGASGDAL 358
>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 622
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 198/407 (48%), Gaps = 39/407 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP
Sbjct: 4 SERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ ++ ++ P++++LAPT ELA QV S +K F + + GG
Sbjct: 64 LLNKV----------TSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQS 113
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QL L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ +
Sbjct: 114 MHQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWI 172
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P +I + D + H +E+ V S
Sbjct: 173 LEHTPEQRQLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQH--- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK AL++++E I+F +C ++ L+ + P H
Sbjct: 230 ---------NKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASS-----PLH 275
Query: 566 AALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D YV
Sbjct: 276 GDMNQQAR-----ERAVEQLKSGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVH 330
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER--NRKGHPLHDVPS 669
R+GRT R AG TG A +FV +++ + R +ER N + P+ VPS
Sbjct: 331 RIGRTGR-AGRTGMAILFVTSREMRML-RTIERATNSRISPMK-VPS 374
>gi|345493220|ref|XP_001605420.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 1
[Nasonia vitripennis]
Length = 777
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 189/382 (49%), Gaps = 32/382 (8%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++E +++Q FL P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 110 FPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYIL 169
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P + + LS+ P V++LAPT ELA Q+ S R S C R+ + G
Sbjct: 170 PATVHINNQPR--LSRGD--GPIVLVLAPTRELAQQIQSVARDFGSSSC---IRNTCIFG 222
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE +
Sbjct: 223 GSPKGPQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQI 281
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCS 500
+ +I Q L +AT P E+ L E F + + G ++ + + + C
Sbjct: 282 RKIIEQIRPDRQVLMWSATWPKEV-QALAEDFLTDYIQINIGSLNLAANHNIRQIIEIC- 339
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
QE +K NK + LL+ I +KTI+F + T +KV++I K R
Sbjct: 340 --QEHEKE------NKLAVLLREIGCERGNKTIIF---VETKKKVDDITKAIKRNG--WP 386
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
+ H Q R + EF ++ LV TD A+RG+D V +VV FD+P
Sbjct: 387 AIAIHGDKSQPERDYVLSEFRNGKT----AILVATDVAARGLDVEDVKYVVNFDYPNSSE 442
Query: 621 EYVRRVGRTAR-GAGGTGKAFI 641
+Y+ R+GRT R + GT A+
Sbjct: 443 DYIHRIGRTGRCQSAGTAYAYF 464
>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
14365]
Length = 497
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 197/388 (50%), Gaps = 42/388 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG S+ ++ ++ + + IQ A PP ++G+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPILQR 62
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E G ++ G+ R +I+ PT ELA+Q+ + + + +P R+ V+ GG Q
Sbjct: 63 L-AETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGR-HLPLRNTVIFGGVNQN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ G+D+L+ATPGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 121 RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRML-DMGFIHDIRKIVA 179
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES-- 505
+ P Q L +AT+P EI + ++ GL + V S ES
Sbjct: 180 AVPSERQTLLFSATMPGEIQS-------------------LAAGLLQEPVKVSVTPESTA 220
Query: 506 -DKTPETAFL----NKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
+ + +L +K+S L +L+ P ++K +VF T + + KR +
Sbjct: 221 AETVEQCVYLVSREDKQSLLTELLRDDPEMAKVLVFSR---TKHGADRVAKRLSKSNIPA 277
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
+ + H Q RL ++ F ++ LV +D A+RG+D + HVV FD P +P
Sbjct: 278 QAI--HGNKSQNARLRALESFKRGDTR----VLVASDIAARGLDIDALSHVVNFDLPNEP 331
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQ 647
YV R+GRT R AG G A F ++
Sbjct: 332 ETYVHRIGRTGR-AGCEGVAMSFCADEE 358
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 188/395 (47%), Gaps = 47/395 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG SD +++++ +Q + +PS IQ A PPV+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 TFKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q E S R +IL PT ELA+QV N R S+ RS+V+ GG QK
Sbjct: 62 ILSQTE-----TSRQRPIRALILTPTRELAAQVHENVRQYSEF-TDLRSLVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVL+ATPGR + L +G + L + +LDE D + D F ++ +++
Sbjct: 116 QVAALNRGVDVLVATPGRLLDLQNQGAICLRKIEILVLDEADRML-DMGFLRDIERIMAL 174
Query: 449 SPVTAQYLFVTAT-------LPVEIYNK--LVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
P Q L +AT L I NK LVE P+ V
Sbjct: 175 MPAKRQNLLFSATFSKDIKRLASGILNKPVLVEATPENSTV------------------- 215
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
D + K A K +++LI + ++ +VF T + K + +
Sbjct: 216 --DAITQKVYRVAKGKKTGLIIKLISEGNWNQVLVFAR---TKHGANKLCKSM--ISSGI 268
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
H Q R + F + + LV TD A+RG+D + HV+ F+ P
Sbjct: 269 TAAAIHGNKSQGARTKALAGFKSGQIS----VLVATDIAARGLDIPLLPHVINFELPNIS 324
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+YV R+GRT R AG +G+A V + + + I
Sbjct: 325 EDYVHRIGRTGR-AGASGEAISLVSADETTFLRDI 358
>gi|410031078|ref|ZP_11280908.1| DNA/RNA helicase [Marinilabilia sp. AK2]
Length = 453
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 206/410 (50%), Gaps = 34/410 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF+ + ++E++ + +P+ IQ A P + G + Q+G+GKT AY+LP
Sbjct: 4 STPSFENFKLNKQLLEAVAEAGYSKPTPIQDKAIPLALSGHDVLGIAQTGTGKTAAYVLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ +++ QG+ PR +ILAPT EL Q+ + K R + + GG
Sbjct: 64 LLMKVKYA--QGMH------PRALILAPTRELVMQIEEAVVTFGKF-TDLRYVCLYGGLG 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
KTQ+E LQ GVD++I+TPGRF+ L K+G + ++ ILDE D + D F ++S+
Sbjct: 115 PKTQIEKLQAGVDIIISTPGRFIDLYKKGEIFPKEIKTMILDEADKML-DMGFMPQIRSI 173
Query: 446 ISSSPVTAQYLFVTATL--PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ PV Q L +AT VE +++ FP+ +V + P E + +
Sbjct: 174 LEFIPVKRQNLLFSATFGPKVEKFSQEFLEFPE-RVEVAP-----QATTAETIQQVKYEV 227
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ KT K + L+ L+E +++ I+F V N L+R E RV
Sbjct: 228 PNIKT-------KINLLIHLLEDENLNRVIIFTKSRKNAESVFNYLERKKLGEIRV---- 276
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
HA Q TR+ +M++F ++ + R+ LV TD A+RG+D + V HV+ FD P +YV
Sbjct: 277 IHANKGQNTRINSMEDF---KAGDVRI-LVATDVAARGLDISMVSHVINFDVPLIYEDYV 332
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R A G A F+ + ++I E R P +P+ ++
Sbjct: 333 HRIGRTGR-AENEGFAITFINPAEEYHFEKIQEIIRMEVPRVQIPAEVDI 381
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 28/373 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG S+ ++ ++ + + P+ IQ A PPV+EG+ Q+G+GKT A+ LP++Q
Sbjct: 3 FQDLGLSEPLLRAIGEKGYTDPTPIQQQAIPPVLEGRDLQGCAQTGTGKTAAFTLPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + R +++ PT ELA Q+ CR ++ + R V+ GG Q+ Q
Sbjct: 63 LAAEPAARGRREI----RALVITPTRELAIQIDECCRDYARY-LSIRHCVIFGGVNQRPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ GVD+L+ATPGR + LI +G + L +R +LDE D + D F ++ ++
Sbjct: 118 VDALQRGVDLLVATPGRLLDLIGQGYISLDKIRFFVLDEADRML-DMGFIHDIRRILPLL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P +I ++ D P + ++P ++K
Sbjct: 177 PAQRQTLFFSATMPPDIAQLAAKILHD------PVLVTVTPPASVVETISQRVHFAEKA- 229
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K L+ L+E S + +VF K+ IL R + + + H
Sbjct: 230 -----EKSQLLIDLLEGSDAQQVLVFTRTKHGADKLAKILNRAGIQSSAI-----HGNKS 279
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R+ M +F + L+ TD A+RGID + V+ +D P P YV R+GRT
Sbjct: 280 QNARVKAMNDFKGGFCR----VLIATDIAARGIDIDQLPLVINYDLPEVPETYVHRIGRT 335
Query: 630 ARGAGGTGKAFIF 642
R AG G A+ F
Sbjct: 336 GR-AGYEGTAWSF 347
>gi|338706722|ref|YP_004673490.1| putative ATP-dependent RNA helicase [Treponema paraluiscuniculi
Cuniculi A]
gi|335344783|gb|AEH40699.1| probable ATP-dependent RNA helicase [Treponema paraluiscuniculi
Cuniculi A]
Length = 647
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 191/376 (50%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SF+ELG ++ + +++ + F P+ IQA A P ++ G + I+A ++G+GKT A+ LP+I
Sbjct: 47 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L S P ++L PT ELA+QV S SL +P R V GG
Sbjct: 107 QEL---------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIP-RIHTVYGGVSIA 156
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL NL++G ++++ TPGR + I+ G L+L LR ILDE D + N F ++S+ S
Sbjct: 157 EQLRNLEQGGEIIVGTPGRVIDHIERGSLELSYLRYFILDEADEMLN-MGFVEDIESIFS 215
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + +VV P +E+F+ +++DK
Sbjct: 216 HANKDARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV---RDADK 272
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
AL++LI+ S +VFC T + + K D + V L H
Sbjct: 273 I---------EALVRLIDVSDNFYGLVFCQ---TKADADTVAKSLDERHYHVAAL--HGD 318
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F T R++ LV TD A+RGID G+ HVV + P D + Y RVG
Sbjct: 319 IPQSQREKILERFRTKRAR----ILVATDVAARGIDIEGITHVVNYSIPHDSATYTHRVG 374
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 375 RTGR-AGSQGIAISFV 389
>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
str. Alaska E43]
gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
Alaska E43]
Length = 432
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 188/375 (50%), Gaps = 31/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L + + ++L + P+ IQ + P ++EGK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + + S + + +ILAPT ELA Q+ N SK ++ V+ GG QK Q
Sbjct: 63 IAKNQNKS---DKSRTIKALILAPTRELAIQIEENFTLYSKH-TNIKNTVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L EGVD+LIATPGR + LI + + L N++ +LDE D +F D ++ +++
Sbjct: 119 TRILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMF-DMGMVRDVKKIVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P E+ + + + D KV + P V + D +
Sbjct: 178 PKVRQNLLFSATMPSEVKSLVNSILKDPVKVEVAP-------------VSSTIDTITQGV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+KKS L+ L++ + +VF T NI+K + T + + H
Sbjct: 225 YFVTKKDKKSLLVHLLKDESIKSLLVFSR---TKYGANNIVKDLAKTGTESQAI--HGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q N ++ S KE ++ LV TD A+RGID G+ HV+ +D P P YV R+G
Sbjct: 280 SQ-----NARQLALSNFKEGKIRVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIF 642
RT R AG +G A F
Sbjct: 335 RTGR-AGNSGVAISF 348
>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 619
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 197/408 (48%), Gaps = 40/408 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL SDY++++++ F + IQ A P V+ G+ I Q+G+GKT A+ +P I+
Sbjct: 70 FSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAIEH 129
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ E+ + +V+IL PT ELA QV L+K + GG + Q
Sbjct: 130 VNAEDR---------NTQVLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQ 180
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
NL+ G +++ TPGR M I++ L+L N+ ILDE D + N F ++ ++S +
Sbjct: 181 FANLKRGTQIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLN-MGFREDIEQILSFA 239
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q + +AT+ EI N + D ++V + +E
Sbjct: 240 KEDRQTVLFSATMSKEILNITKKFQNDPEIVKVTRKEITNTNIE---------------- 283
Query: 510 ETAFLNKKSA----LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
++ +L KK A +++LI+ + +VFCN T KV+ I++ L H
Sbjct: 284 QSYYLVKKEAKFELMVRLIDVHDLQLMLVFCN---TKSKVDEIVEELQANGYAAEGL--H 338
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ Q R M +F +K LV TD A+RGID +GVD V+ +D P D YV R
Sbjct: 339 GDMRQAARNQVMNKFRNGNTK----ILVATDVAARGIDVSGVDAVINYDLPMDLEYYVHR 394
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
+GRT R AG GKAF+F+ + S + + + + P +P++ +L
Sbjct: 395 IGRTGR-AGKLGKAFLFITKRDRSRMRDLEQYTKVAIPQGKIPTSADL 441
>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|386350803|ref|YP_006049051.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|346719239|gb|AEO49254.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
Length = 799
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 191/386 (49%), Gaps = 50/386 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S + +++ + P+ IQ A P V G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ K+ + PR +ILAPT ELA+QV N K ++++ GG
Sbjct: 61 -----DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLI-GGESMNE 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ +++
Sbjct: 115 QQKVLDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRML-DMGFIPDVERIVAL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+ EI +L + F +M P RI P Q+ +T
Sbjct: 174 LPKIRQTLFFSATMDKEI-RRLADAF-----LMNPKEVRIEP-----------TQKVAET 216
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR-----FDRKETR 558
E A + K+ AL QL+ + V+ +FCN+ R V+ + K FD
Sbjct: 217 VEQALIMVKASEKREALRQLLRRETVTNAFIFCNR---KRDVDVLYKSLSGHGFD----- 268
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
+L H + Q R +++F + + +VC+D A+RGID V HV FD P
Sbjct: 269 --ILALHGDMPQYVRTERLEKFKRAEVQ----LMVCSDVAARGIDVTEVSHVFNFDVPTH 322
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVV 644
P +Y+ R+GRT R AG G+A+
Sbjct: 323 PEDYIHRIGRTGR-AGRLGRAYTLAT 347
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 186 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 238
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 239 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 287
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 288 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 343
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 344 RTGR-AGASGQAVSLVSNEEIKL 365
>gi|392383668|ref|YP_005032865.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
gi|356878633|emb|CCC99520.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
Length = 478
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 200/409 (48%), Gaps = 47/409 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++ ++ + + + IQA A P ++EG+ + Q+G+GKT A+ LP++QR
Sbjct: 4 FSGLGLIEPLLRAVAEEGYQTATPIQAGAIPVLLEGRDVLGLAQTGTGKTAAFTLPILQR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + +PR +IL PT ELA Q+ + R+ + +P R V+ GG Q Q
Sbjct: 64 L----FQNKKRVQAKAPRTLILTPTRELALQIGESFRTYGRH-LPIRRTVIHGGVGQSPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L G DVL+ATPGR + L+ + L + +LDE D + D F ++ +++
Sbjct: 119 VAALARGTDVLVATPGRLLDLMAQKQCVLDQVEIFVLDEADRML-DMGFIRDVRKVVAVL 177
Query: 450 PVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
P Q L +AT+P VE+ + + +EV P V RI+ + VD +
Sbjct: 178 PKQRQTLLFSATMPEAVVELAHSILTDAERIEVAPQSTTV-----ERIAQRV--LFVDRA 230
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+K+ L L+++ + +TIVF ++ + LK+ V
Sbjct: 231 --------------DKRRLLADLLQEGAMERTIVFARTKHGADRIADHLKKAG-----VP 271
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ ++ F + K LV TD A+RGID G+ HV+ FD P +P
Sbjct: 272 ADAIHGDKSQSARVRALESFRSGDLKA----LVATDIAARGIDIDGITHVINFDLPNEPE 327
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL-HDVP 668
YV R+GRTAR AG G A F ++V+ + I + R+ P HD P
Sbjct: 328 SYVHRIGRTAR-AGTDGSAVSFCDAEEVAYLKAIEKTIRQPVPADHDHP 375
>gi|417857754|ref|ZP_12502811.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338823758|gb|EGP57725.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 491
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 190/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISRM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLSHSYLTDPVKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P + IVF T E + K + +V H
Sbjct: 233 KTD----LLKKS-----LNENPDGRAIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 278
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 279 NKSQGQRERALKGFKDGDIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 334
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 335 GRTAR-AGRDGIAIAFCAPDETRLLHDI 361
>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 432
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 188/375 (50%), Gaps = 31/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L + + ++L + P+ IQ + P ++EGK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + + S + + +ILAPT ELA Q+ N SK ++ V+ GG QK Q
Sbjct: 63 IAKNQNKS---DKSRTIKALILAPTRELAIQIEENFTLYSKH-TNIKNTVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L EGVD+LIATPGR + LI + + L N++ +LDE D +F D ++ +++
Sbjct: 119 TRILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMF-DMGMVRDVKKIVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P E+ + + + D KV + P V + D +
Sbjct: 178 PKVRQNLLFSATMPSEVKSLVNSILKDPVKVEVAP-------------VSSTIDTITQGV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+KKS L+ L++ + +VF T NI+K + T + + H
Sbjct: 225 YFVTKKDKKSLLVHLLKDESIKSLLVFSR---TKYGANNIVKDLAKTGTESQAI--HGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q N ++ S KE ++ LV TD A+RGID G+ HV+ +D P P YV R+G
Sbjct: 280 SQ-----NARQLALSNFKEGKIRVLVATDIAARGIDVDGLSHVINYDLPDVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIF 642
RT R AG +G A F
Sbjct: 335 RTGR-AGNSGVAISF 348
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 146 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 257
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 258 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 314
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 315 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 360
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 361 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 416
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 417 HRIGRTGR-AGATGDAL 432
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 203/382 (53%), Gaps = 35/382 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++FKELG S+ +++++ F PS IQ A P ++GK I Q+G+GKT A+ +P++
Sbjct: 3 ETFKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPIL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ ++ P+ ++L+PT ELA Q L++ + +++ + GG +
Sbjct: 63 QRI---------DTSKPGPQAIVLSPTRELAIQSAEEINHLAQY-MNIKTIPIYGGQDIE 112
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L++ ++++ATPGR M +K + L N++ A+LDE D + D F ++++++
Sbjct: 113 RQFRALKKKPNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMV-DMGFIDDIRTIMA 171
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q LF +AT+P I +L F + ++ ++ L E QE +
Sbjct: 172 ATPKERQTLFFSATMPAPI-RELANSFLNEPEIVKIKAATVTIDLIE--------QEYIE 222
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
P+ K AL +L++ IVF T R+ + + + ++ L H
Sbjct: 223 LPDR---QKFDALCRLLDMQSPELAIVFVR---TKRRADEVTEALKKRAYSAEGL--HGD 274
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q+ R + +++F KE + FLV TD A+RG+D +GV HV FD P+DP YV RV
Sbjct: 275 LSQQKRDSVIRQF-----KEGTIDFLVATDVAARGLDISGVTHVYNFDMPQDPEIYVHRV 329
Query: 627 GRTARGAGGTGKAFIFVVGKQV 648
GRT R AG TG A FV+ +++
Sbjct: 330 GRTGR-AGKTGLATTFVISREM 350
>gi|416998824|ref|ZP_11939493.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ACS-068-V-Sch12]
gi|333976977|gb|EGL77836.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ACS-068-V-Sch12]
Length = 432
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I++L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + + + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQISDEAKEIGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LI
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE IVFCNK + I ++ + + H
Sbjct: 231 ------------LIKMIEDDNPFLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D PRD Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + S +RI
Sbjct: 330 RTGR-AGNSGVAVTFATPQDESWLRRI 355
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 201/404 (49%), Gaps = 38/404 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + ++S SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPQ------ANSSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNSQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + + P +E + +
Sbjct: 184 RILNLLPKQRQTLLFSATFSPEI-KKLASTY-----LSNPQT------IEVARSNATATN 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ E A +K++A+++LI + + IVFCN + ++ L+R V
Sbjct: 232 VTQVVYEIAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQLER-----DGVVATA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQNERMQALDAFKRGEVEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGHPL 664
R+GRT R AG +G A KQ++ +++++R+ PL
Sbjct: 343 HRIGRTGR-AGASGDALSLCSPNERKQLADIEKLIKRDLPLQPL 385
>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
Length = 488
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 127/417 (30%), Positives = 201/417 (48%), Gaps = 43/417 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++L Q + P+ IQ + P +++G+ + Q+G+GKT ++ LP+++
Sbjct: 52 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 111
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +T PRV++LAPT EL +Q+ + ++ ++ + F VV GG Q Q
Sbjct: 112 L----IKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYAR-HMKFTQAVVFGGVGQGRQ 166
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E ++ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 167 VEAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRML-DMGFVRDIRRIMTFV 225
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P I + + D +V + P + RI + V+ +GD
Sbjct: 226 PEQRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAV--MFVNGAGD--- 280
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ ALL ++E VS+ +VF KV L + V H
Sbjct: 281 ----------KRDALLNMVESPKVSRAVVFTLMKHEANKVAEFLNK-----NNVVAEAIH 325
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R MK F + K LV TD A+RGID V HV +D P P YV R
Sbjct: 326 GNKSQGARERAMKGFRSGSVK----VLVATDIAARGIDVDDVSHVFNYDLPNVPESYVHR 381
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN-------RKGHPLHDVPSAFELMR 675
+GRTAR AG G A F +Q + R +ER + HP H + MR
Sbjct: 382 IGRTAR-AGRDGWAVSFCDAEQRAWL-RDIERTIGKTVPVVRDHPWHSDEAEASTMR 436
>gi|341615128|ref|ZP_08701997.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 460
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 126/385 (32%), Positives = 191/385 (49%), Gaps = 49/385 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L Q + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I R
Sbjct: 4 FSDLGLSQPVLQALDLQGYKEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
LR + Q KS R+++LAPT ELA Q+ + + G+ +S+V GG
Sbjct: 64 LRDADNQTPFKSC----RMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIV--GGTSVNK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L G D+L+ATPGR + LI + L + +LDE D + D F AL+ +
Sbjct: 118 DRNKLHRGTDILVATPGRLLDLIDQRAFTLDAVEILVLDEADQML-DLGFIHALRKINEL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSGD 502
+P Q LF +AT+P +I +LV + C+ P ++P +E+FL D
Sbjct: 177 TPKDRQTLFFSATMPKQI-KELVSQY--CR---NPVQVSVTPESTTAERIEQFLFMVQQD 230
Query: 503 QESDKTPETAFLNKKSALLQLI----EKSP--VSKTIVFCNKIVTCRKVENILKRFDRKE 556
+ K +LL+LI + P + + +VF C +V L + +
Sbjct: 231 E-------------KQSLLELILSGRHEIPGKIERVLVFARTKHGCDRVVKKLAQVN--- 274
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ H Q R + EF +++ LV TD A+RGID GV HV+ ++ P
Sbjct: 275 --IAANAIHGNKSQPQRERALDEFKRAKTP----VLVATDVAARGIDIPGVSHVINYELP 328
Query: 617 RDPSEYVRRVGRTAR-GAGGTGKAF 640
P +YV R+GRTAR GA G AF
Sbjct: 329 NVPEQYVHRIGRTARAGADGIAIAF 353
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 179/374 (47%), Gaps = 27/374 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I +
Sbjct: 4 FSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ ++ + PR +++APT ELA QV S+ +K G ++ GG Q
Sbjct: 64 LQS------GRAKARMPRALVIAPTRELADQVASSFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + LV K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+ K+ AL LIEK+ + IVFCN+ V LK P H LD
Sbjct: 227 SSDPKAKRLALRALIEKAQIETGIVFCNRKTEVDIVAKSLKVHGYDAA-----PIHGDLD 281
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R+ + +F + K LV +D A+RG+D V HV +D P +YV R+GRT
Sbjct: 282 QTQRMKTLADFRSGALK----ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRT 337
Query: 630 ARGAGGTGKAFIFV 643
R AG TG ++ V
Sbjct: 338 GR-AGRTGITYMLV 350
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 189/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 31 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 91 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 143
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 144 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLP 202
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI KL + R +E + +
Sbjct: 203 DLQRILNLLPKERQTLLFSATFSGEI-KKLAATY-----------LRNPQTIEVARSNST 250
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+ E A +K A+++LI + + + IVFCN + ++ L+R T +
Sbjct: 251 ATNVTQVVYEVAEGDKTGAVVKLIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAI- 309
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 310 ----HGDRSQSERMQALDAFKRGEVEA----LVATDVAARGLDIAELPAVINFDLPFNAE 361
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 362 DYVHRIGRTGR-AGASGDAL 380
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 175 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 228 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 277 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 333 RTGR-AGASGQAVSLVSNEEIKL 354
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 179/374 (47%), Gaps = 27/374 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I R
Sbjct: 4 FTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ ++ + PR +++APT ELA QV ++ +K G ++ GG Q
Sbjct: 64 LQS------GRAKARMPRALVIAPTRELADQVAASFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + LV K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+ K+ AL LIEK+ + IVFCN+ V LK P H LD
Sbjct: 227 SSDPKAKRLALRALIEKAGIETGIVFCNRKTEVDIVAKSLKVHGYDAA-----PIHGDLD 281
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R+ + +F + K LV +D A+RG+D V HV +D P +YV R+GRT
Sbjct: 282 QTQRMKTLADFRSGALK----ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRT 337
Query: 630 ARGAGGTGKAFIFV 643
R AG TG ++ V
Sbjct: 338 GR-AGRTGITYMLV 350
>gi|449664058|ref|XP_002155207.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Hydra
magnipapillata]
Length = 473
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 205/417 (49%), Gaps = 35/417 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ +F L +++ L+ + +P+ IQ + P V++ K+ A Q+GSGKTL Y+ P
Sbjct: 63 NQSTFSTLNLRSDLLDGLQNIHITQPTIIQMLGIPLVLQKKNVFCAAQTGSGKTLVYVTP 122
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ+L E G S PRV++L+PT ELASQ+L + S FRS+ V G +
Sbjct: 123 IIQKLGNEVEAGFIGRLS-RPRVLVLSPTRELASQILKVFKHFSHY-CRFRSVGVIGQNQ 180
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+K + ++ VDV++ TP + ++G+L ++R + DE D L D++F
Sbjct: 181 KKWAKDYVKGLVDVVVGTPSTILKWNQKGLLNFSDVRYVVFDEADTLM-DDNFRNTTSEF 239
Query: 446 I--------SSSPVTAQYLFVTATLPVE-IYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496
+ S + Q++ ATLP + + + E PD +V +H++ P ++
Sbjct: 240 LKLLDCESDSKNGTNIQFILTAATLPPKGVLGRYQEFIPDLQVCQS-NLHKVLPHIKHSF 298
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
+ DQ+S+ +NK + L +K K I+FCN +C V L
Sbjct: 299 MKTRQDQKSE-----LLINKLTLFLSQSDK----KCIIFCNTSKSCNWVSAKLDELKIDH 349
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
T++ H ++ + RL + K+FT +++ ++ TD ASRG+D + VV FD P
Sbjct: 350 TKL-----HGDMNPQIRLQSYKKFTDGKTR----LMISTDIASRGLDSNDITLVVNFDCP 400
Query: 617 RDPSEYVRRVGRTARGAGGTGK---AFIFVV-GKQVSLAQRIMERNRKGHPLHDVPS 669
+ ++Y+ R GRT R A K FV K+ A+++ E +K L + S
Sbjct: 401 FNATDYIHRSGRTGRAASCFSKNEEVLTFVTQNKEFLFAKKVQEAAKKNKCLEGIHS 457
>gi|189193121|ref|XP_001932899.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978463|gb|EDU45089.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 606
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 121/396 (30%), Positives = 192/396 (48%), Gaps = 42/396 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S+ +++ F ++IQ A PP++ G+ + A ++GSGKTLA+L+P I+
Sbjct: 129 FAELNLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 188
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q L+ ++ +G V++++PT ELA Q+ R L + + + GG + +
Sbjct: 189 LSQ--LRFKPRNGTG---VIVVSPTRELALQIFGVARELMEHHSQTFGICI-GGANRSAE 242
Query: 390 LENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
+ L++GV++LIATPGR + L NLR ++DE D + + FE ++S+I
Sbjct: 243 ADKLRKGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRIL-EVGFEDEMRSIIKI 301
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP--------GMHRISPGLEEFLVDCS 500
P Q + +AT + VE + GP H GLE+ V C
Sbjct: 302 LPTERQTMLFSATQTTK-----VEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCD 356
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
D + L ++K K IVF + + +L D +
Sbjct: 357 SD------------TRFRLLFSFLKKHQKKKVIVFLSSCASVDFYSELLNYID-----LP 399
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
VL H L Q+ R EF ++S L+CTD A+RG+D VD V+ FD P DP
Sbjct: 400 VLGLHGKLKQQARTNRFFEFVNAQSGT----LICTDVAARGLDIPEVDWVIQFDPPDDPR 455
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+Y+ RVGRTARGA G G++ +F++ +V + + E
Sbjct: 456 DYIHRVGRTARGANGKGRSLMFLLPSEVGFLKLLKE 491
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 186 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 238
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 239 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 287
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 288 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 343
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 344 RTGR-AGASGQAVSLVSNEEIKL 365
>gi|422558548|ref|ZP_16634288.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
Length = 564
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 54 SFANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 172
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 231
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 283
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 284 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 334
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 335 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 390
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 391 IGRTGR-AGAKGLAVTLV 407
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 186 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 238
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 239 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 287
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 288 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 343
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 344 RTGR-AGASGQAVSLVSNEEIKL 365
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 175 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 228 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 277 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 333 RTGR-AGASGQAVSLVSNEEIKL 354
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 188/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI D + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
E DKT A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 241 ---EGDKT---------GAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVIATAI- 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 288 ----HGDRSQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAE 339
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 340 DYVHRIGRTGR-AGASGDAL 358
>gi|410943162|ref|ZP_11374903.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 841
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 184/371 (49%), Gaps = 30/371 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + P+ IQA A P V++G + Q+G+GKT ++ LP++
Sbjct: 336 FADLGLSEPIMQAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPML-- 393
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E+L G S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 394 ---EKLSG-SRARARMPRSLILEPTRELALQVADNFKLYGKH-LRLTHALLIGGESMAEQ 448
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + L G L L ++DE D + D F ++ ++
Sbjct: 449 RDVLNRGVDVLIATPGRLLDLFSRGGLLLTQTSTLVIDEADRML-DMGFIPDIEKIVGLL 507
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+ EI E + + ++ +EE L+ D+
Sbjct: 508 PRNRQTLFFSATMAPEIRRLADEFLRNPVEITVSRPSSVATTIEEGLIIVDEDE------ 561
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K+ AL +L+ V IVFCN+ ++ ++L+R+ K H L
Sbjct: 562 ------KRRALRKLLRSQDVQSAIVFCNR----KRDVDMLQRYLTKHG-FAAGHLHGDLA 610
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + + F + K LVC+D A+RGID G+ HV FD P + +YV R+GRT
Sbjct: 611 QSLRFSTLDNFKSGELK----ILVCSDVAARGIDIGGLSHVFNFDLPFNAEDYVHRIGRT 666
Query: 630 ARGAGGTGKAF 640
R AG G AF
Sbjct: 667 GR-AGKHGHAF 676
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 175 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 228 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 277 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 333 RTGR-AGASGQAVSLVSNEEIKL 354
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 188/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI D + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
E DKT A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 241 ---EGDKT---------GAVVQLIRERGLKQVIVFCNSKIGASRLSRSLERDGVIATAI- 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 288 ----HGDRSQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAE 339
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 340 DYVHRIGRTGR-AGASGDAL 358
>gi|422518910|ref|ZP_16594978.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
Length = 564
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 54 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 114 RITLPGDEGWGELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLAVYGGVGYE 172
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 231
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 283
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 284 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DARGFKPRAI--H 334
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 335 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 390
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 391 IGRTGR-AGAKGLAVTLV 407
>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
Length = 527
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 188/380 (49%), Gaps = 27/380 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + +++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K + ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYTKH-LKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + + S +E+ +V ++ +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREAS 235
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K++AL LI E ++ I+FCN+ V LK++ P H
Sbjct: 236 E-----KRTALRALINAEGEKLTNGIIFCNRKSDVDIVAKSLKKYG-----FDAAPIHGD 285
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R + F +E +L LV +D A+RG+D V HV FD P P +YV R+
Sbjct: 286 LDQSQRTKTLDGF-----REGKLRILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVVGK 646
GRT R AG GKA G+
Sbjct: 341 GRTGR-AGREGKAITICSGR 359
>gi|399116968|emb|CCG19780.1| ATP-dependent rna helicase [Taylorella asinigenitalis 14/45]
Length = 562
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 196/400 (49%), Gaps = 51/400 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++SL+R +F P+++Q + P +EGK I++ Q+GSGKT A++LP IQ
Sbjct: 5 NFADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 329 RLRQE-----ELQGLSKSTS-----GSP---------RVVILAPTAELASQVLSNCRSLS 369
RL E + + +SK+ S G P ++++L PT ELA QV +
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKKGKPTANPPKYGVQILVLTPTRELAMQVADATKEFI 124
Query: 370 KC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
GV ++V GG Q+ +L V++++ATPGR + IK G ++L NL+ ILD
Sbjct: 125 YGFKGVHIATLV--GGMAYGPQINSLSREVEIIVATPGRLLDHIKAGRVKLHNLKVLILD 182
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + D F ++++++ +P Q L +AT E+ + ++
Sbjct: 183 EADRML-DMGFIHDIKNVVAETPDEKQTLLFSATFEGNTVKLAKEMLKSPERIVVSDHKE 241
Query: 488 ISPGLEEFL--VDCSGDQESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRK 544
+E+FL D G K LL+ + + P V +TIVF T R
Sbjct: 242 KHQNIEQFLFYADTVGH--------------KFKLLEALLRDPDVDQTIVFTK---TKRG 284
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
++ KR K+ + H ++Q R ++ R K LV TD A+RGID
Sbjct: 285 ACDLAKRL--KDLDFKAGELHGDMNQGQRNRTIQALQKGRIK----VLVATDVAARGIDI 338
Query: 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644
G+ HVV +D P +YV R+GRT R AG G+A+ +
Sbjct: 339 QGISHVVNYDLPMQAEDYVHRIGRTGR-AGRDGRAYTLAL 377
>gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB5]
gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
Length = 482
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 192/379 (50%), Gaps = 28/379 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RILADRIKPQPKNC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P+ Q LF +AT+P +I + ++ D P ++P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLAEQMLRD------PARVAVTP------VASTVERINQRV 230
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K + L Q++++ V++ +VF KV L+R + H
Sbjct: 231 IHLDHSAKPAMLAQILQQDGVNQALVFTRTKHGADKVVKGLQRAG-----ITADAIHGNK 285
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+GR
Sbjct: 286 SQNYRERVLAAF---RTGELRT-LVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGR 341
Query: 629 TARGAGGTGKAFIFVVGKQ 647
TAR AG G A G +
Sbjct: 342 TAR-AGAEGTAISLCAGGE 359
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 193/383 (50%), Gaps = 31/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 175 LPKQRQNLMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++KSALL QLI+++ + +VF ++ L ++ ++ H
Sbjct: 228 ------SQKSALLIQLIKQNDWQQVLVFSRTKHGANRLAKSL-----EDAGIKAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F +++ LV TD A+RG+D + VV FD P P +YV R+G
Sbjct: 277 KSQTARTKALADFKNGQAR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V +++ L
Sbjct: 333 RTGR-AGASGQAVSLVSNEEIKL 354
>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Diplosphaera colitermitum
TAV2]
Length = 451
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 184/376 (48%), Gaps = 36/376 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ ++ P+ +Q A P V+ G+ + + Q+G+GKT A+ LPV+ R
Sbjct: 3 FSKLGLPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPVLAR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G PRV++L PT EL +QV + R + RS ++ GG Q
Sbjct: 63 --------LGGHRPGGPRVLVLEPTRELGAQVETAFRDFGRF-TDVRSTIIHGGVGYGKQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ G D++IAT GR M IKE ++L ++ ILDEVD + D F ++ ++
Sbjct: 114 RSDLRAGTDIVIATVGRLMDFIKEKEIRLDSVEVLILDEVDRML-DMGFINDVKRIVGLC 172
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + V F + P RI G + ES K
Sbjct: 173 PKQRQTLFFSATIPPEIED--VARF----ALQNP--ERIEIGRARTV------NESVKHA 218
Query: 510 --ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
F K L +++K I+F T + I +R K+ V VL HA
Sbjct: 219 IYPVTFEQKFDLLCAILDKLDYESVIIFSR---TKHGADRIARRLKSKKHSVAVL--HAN 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R+ ++ F R + +V TD A+RGID AGV HV+ +D P +P +YV R+G
Sbjct: 274 RSQNQRVEALEGFKNGRYE----VMVATDIAARGIDVAGVSHVINYDVPENPEDYVHRIG 329
Query: 628 RTARGAGGTGKAFIFV 643
RT R A G AF+ V
Sbjct: 330 RTGR-AMAVGDAFMLV 344
>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
Length = 639
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 194/393 (49%), Gaps = 32/393 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-V 326
+ F+E Y++E ++RQ + +P+ IQA +P + G+ + Q+GSGKTL Y+LP +
Sbjct: 138 QYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAI 197
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV--LSNCRSLSKCGVPFRSMVVTGGF 384
+ + Q L S P V++LAPT ELA Q+ ++NC + R+ + GG
Sbjct: 198 VHIIHQPRL-----SNGDGPIVLVLAPTRELAQQIQEVANCFGETAA---VRNTCIFGGA 249
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q +L+ G+++ IATPGR + ++ G L +LDE D + D FE ++
Sbjct: 250 PKGPQAHDLERGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRK 308
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE-EFLVDCSGDQ 503
+I Q L +AT P E+ L E F V + G +S ++D +
Sbjct: 309 IIEQIRPDRQVLMWSATWPKEV-RALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCHEY 367
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D +K LLQ I +KTI+F + T RKV++I + R + +
Sbjct: 368 EKD--------SKLYRLLQEIGTEKENKTIIF---VETKRKVDDITRNIRRDG--WQAVS 414
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +Q+ R ++EF + R+ LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 415 IHGDKNQQERDHVLQEFRSGRAP----ILVATDVAARGLDVDDVKYVINFDYPSSSEDYI 470
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R TG A+ F + A ++E
Sbjct: 471 HRIGRTGR-RRQTGTAYAFFTSHNMKHAGDLIE 502
>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 509
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 193/380 (50%), Gaps = 30/380 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L+ +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 63 RLLENRVRPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-LRLSAALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + +GV+VL+ATPGR + L++ ++L + +LDE D + D F ++ +++
Sbjct: 118 QVRAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPVKRQTLFFSATMPKDIAELAEHMLRDPARVAVTP-------------VSSTAERITQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K + L +L++ PV++ +VF KV L + +P A
Sbjct: 224 IIQLDHSAKPATLSELLKSEPVNRALVFTRTKHGADKVVRGLVKAG--------IPSEAI 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+++ + + R+ + R LV TD A+RGID G+ HV FD P P YV R+G
Sbjct: 276 HGNKSQNHRERVLASFRNGDIRT-LVATDIAARGIDVDGITHVFNFDLPNIPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQ 647
RTAR AG G A V G++
Sbjct: 335 RTAR-AGADGTAISLVAGEE 353
>gi|422486274|ref|ZP_16562630.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
Length = 560
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKPRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP++Q
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYGKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRSRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|345493222|ref|XP_003427025.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 2
[Nasonia vitripennis]
Length = 710
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 187/382 (48%), Gaps = 32/382 (8%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++E +++Q FL P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 43 FPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYIL 102
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P + + S P V++LAPT ELA Q+ S R S C R+ + G
Sbjct: 103 PATVHINNQP----RLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSC---IRNTCIFG 155
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE +
Sbjct: 156 GSPKGPQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQI 214
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCS 500
+ +I Q L +AT P E+ L E F + + G ++ + + + C
Sbjct: 215 RKIIEQIRPDRQVLMWSATWPKEV-QALAEDFLTDYIQINIGSLNLAANHNIRQIIEIC- 272
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
QE +K NK + LL+ I +KTI+F + T +KV++I K R
Sbjct: 273 --QEHEKE------NKLAVLLREIGCERGNKTIIF---VETKKKVDDITKAIKRNG--WP 319
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
+ H Q R + EF ++ LV TD A+RG+D V +VV FD+P
Sbjct: 320 AIAIHGDKSQPERDYVLSEFRNGKTA----ILVATDVAARGLDVEDVKYVVNFDYPNSSE 375
Query: 621 EYVRRVGRTAR-GAGGTGKAFI 641
+Y+ R+GRT R + GT A+
Sbjct: 376 DYIHRIGRTGRCQSAGTAYAYF 397
>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 494
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 200/416 (48%), Gaps = 37/416 (8%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+ +F++ + ++L +P+ IQ + V+ G + + Q+G+GKTL+Y++P+
Sbjct: 36 KSTFEQYSLHANLCKALHESGIHKPTSIQRKSINAVLSGHNILCLAQTGTGKTLSYMIPI 95
Query: 327 IQRLRQEELQGLSKSTSG----SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
I+++++ E L ++ + PRV+I P+ ELA Q+ S + L+ V F S VVT
Sbjct: 96 IEKIKRSESAKLRETQAAPLISRPRVLIAVPSRELALQLGSVAKQLAH-HVKFASCVVTN 154
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND-----ED 437
G +K Q + L +D+LI TPGR + IK+ L + ILDE D LF+ +D
Sbjct: 155 GEHKKVQQQKLARPIDILIGTPGRIVTCIKKQDFYLSQIDTLILDEADTLFDAKMGFIDD 214
Query: 438 FEVAL---QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
+ L Q+ Q + V AT + +F K+V +RI +++
Sbjct: 215 LKAILAPIQASCHKRECKLQSILVAATATKSVGRVWNRMFEGIKLVSDNQFNRIPKEIKQ 274
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRF 552
V + P+ + + AL Q K+ +TI+FCN I +C+ E++L+
Sbjct: 275 TFVRVA--------PQAKYTVLRDALEQHRGRGKAKFQRTIIFCNDIASCQAAEHMLR-- 324
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
+ + H + + R A ++ F + LVCTD RG+D ++HV++
Sbjct: 325 ---QNGFKTASLHKDVPKPIRQAAIQNFDSGSVP----VLVCTDLGGRGLDIDSIEHVIM 377
Query: 613 FDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS----LAQRIMERNRKGHPL 664
DFPR +Y+ RVGRT R AG G F+ + L + + + +K HPL
Sbjct: 378 LDFPRSVIDYIHRVGRTGR-AGKAGYVTSFMTKGDTTVYRMLQKSMRDAEKKTHPL 432
>gi|390445038|ref|ZP_10232802.1| DEAD/DEAH box helicase [Nitritalea halalkaliphila LW7]
gi|389663359|gb|EIM74890.1| DEAD/DEAH box helicase [Nitritalea halalkaliphila LW7]
Length = 451
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 203/403 (50%), Gaps = 34/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF + + + E+++ + +P+ +Q P + G + Q+G+GKT AYLLP++
Sbjct: 7 SFDDFKLNKQLQEAVREAGYQKPTPVQEKTIPLTLAGHDVLGIAQTGTGKTAAYLLPILY 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+++ QG+ PR +ILAPT EL Q+ + + + R + + GG KT
Sbjct: 67 KVKYA--QGMY------PRALILAPTRELVMQIEAEAKKFA-AYTDIRMLALYGGLGPKT 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVD+LI+TPGRFM L ++G+L L+ +LDE D + D F ++S++
Sbjct: 118 QIEALEAGVDLLISTPGRFMELYRKGVLFPRELKTMVLDEADKML-DMGFMPQIRSILEV 176
Query: 449 SPVTAQYLFVTATL--PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT VE + FP+ +V + P E + + +
Sbjct: 177 IPRKRQNLLFSATFSGKVEQLSHEFLAFPE-RVELTP-----QATTAETITQVKYEVPNI 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT K + L L+ +S + IVF V + ++R + E VRV+ HA
Sbjct: 231 KT-------KINLLAYLLMQSEFQRVIVFTKSRKNAEAVYSFVER--KVEGEVRVI--HA 279
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q TR+ M+ F ++ E R+ LV TD A+RG+D + V HVV FD P +YV R+
Sbjct: 280 NKGQNTRINAMEAF---KAGEVRV-LVATDVAARGLDISMVSHVVNFDVPLIYEDYVHRI 335
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
GRT R A +G A V +V ++I E R+ PL +P+
Sbjct: 336 GRTGR-AEQSGHALTMVNPAEVYHMEKIEEIIRRPVPLVHLPT 377
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 206/413 (49%), Gaps = 42/413 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLSKGQ-----RAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +++++ C D+
Sbjct: 175 LPKQRQNLMFSATFSDEIRQLAKGLVNNPVEISVTPRNAAATTVKQWV--CPVDK----- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
++KSALL QLI++ + +VF K R +N+ +E ++ H
Sbjct: 228 ------SQKSALLIQLIKQQDWQQVLVFSRTKHGANRLAKNL------EEAGIKAAAIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + +F T + + LV TD A+RG+D + VV FD P P +YV R+
Sbjct: 276 NKSQTARTKALADFKTGQVR----VLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVS-------LAQRIMERN--RKGHPLHDVPSA 670
GRT R AG +G+A V +++ L R+++R P+H +P +
Sbjct: 332 GRTGR-AGASGQAVSLVSSEEIKLLNDIERLINRVLDREMVEGFSPVHALPES 383
>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
Length = 570
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 181/373 (48%), Gaps = 24/373 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + S + P +ILAPT ELA Q+ R+ + GG + Q
Sbjct: 176 INHQP----RLSRNDGPIALILAPTRELAQQIQQVASDFGMSS-QVRNTCIFGGAPKGPQ 230
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 231 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 289
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 290 RPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDVCE 341
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E +K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 342 EYEKESKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGDKS 396
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+GRT
Sbjct: 397 QQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRT 452
Query: 630 ARGAGGTGKAFIF 642
R + TG A+ F
Sbjct: 453 GR-SQRTGTAYAF 464
>gi|423344472|ref|ZP_17322184.1| hypothetical protein HMPREF1077_03614 [Parabacteroides johnsonii
CL02T12C29]
gi|409212870|gb|EKN05904.1| hypothetical protein HMPREF1077_03614 [Parabacteroides johnsonii
CL02T12C29]
Length = 426
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/394 (31%), Positives = 187/394 (47%), Gaps = 41/394 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++ L NFL + +Q + P ++EGK I Q+G+GKT AY+LPVI
Sbjct: 3 FDELDLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINE 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG---FRQ 386
L + GL + + + +I+APT ELA Q+ + VP ++ V GG
Sbjct: 63 LSK----GLHPANAIN--AIIMAPTRELAQQIDQQIEGFTYF-VPVSAVAVYGGTDGIAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++ G D++IATPGR + IK G + L + ILDE D + D F + +
Sbjct: 116 EQQKRGMEMGADIVIATPGRLLSHIKLGTVDLSQVSFFILDEADRML-DMGFYDDIMQVY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q + +AT+P P + + I EE + S E+
Sbjct: 175 KLLPETCQTIMFSATMP-----------PKIRTLA----QTILKNPEEVKIAISRPPET- 218
Query: 507 KTPETAF----LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+TA+ + K L L +S + I+F + + +++ + LKR + V
Sbjct: 219 -IMQTAYVCYDMQKLRILEDLFSQSRPQRVIIFSSSKMKVKELASTLKRM-----KFNVA 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H+ L+Q R MKEF R LV TD SRGID + V+ FD P DP +Y
Sbjct: 273 AMHSDLEQSQREEVMKEFKNGRID----ILVATDVVSRGIDINDIKLVINFDIPHDPEDY 328
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
V R+GRTARG G G A F+ ++ +RI E
Sbjct: 329 VHRIGRTARGTNGEGLAITFISTEEQFQFKRIEE 362
>gi|420155719|ref|ZP_14662575.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394758696|gb|EJF41558.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 595
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 193/378 (51%), Gaps = 34/378 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL ++++L+ + + PS IQ A PP + G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFQELNLIAPILKALQEEQYEAPSPIQEKAIPPALLGRDVLGCAQTGTGKTAAFAVPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K + R +IL PT ELA Q+ + R+ + +P RS V+ GG Q
Sbjct: 62 TLNAQP--PVPKGQKRAIRSLILTPTRELAIQIGESLRAYGRY-LPLRSEVIFGGVSQVP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GVD+L+ATPGR LI++G + L ++ +LDE D + D F ++ +I+
Sbjct: 119 QVNSLNRGVDILVATPGRLNDLIQQGFIDLGAVQIFVLDEADRML-DMGFIHDVKRVITR 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEE--FLVDCSGDQE 504
P Q LF +AT+P EI +LV+ + KV + P + + +E+ + VD
Sbjct: 178 LPKQKQTLFFSATMPPEI-TELVDSLLVEPIKVAVAP-VSSTADAIEQSVYFVDKG---- 231
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
NK L+ L++ S + +VF +V L R +++
Sbjct: 232 ----------NKPKLLIDLLKHSEIESALVFTRTKHGADRVARELAR-----AKIQAQAI 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + F ++++ R+ LV TD A+RGID + HV+ +D P P YV
Sbjct: 277 HGNKSQTARQQALSSF---KARQIRV-LVATDIAARGIDIDELSHVINYDLPNVPETYVH 332
Query: 625 RVGRTARGAGGTGKAFIF 642
R+GRT R AG G A F
Sbjct: 333 RIGRTGR-AGLDGTAISF 349
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 193/392 (49%), Gaps = 37/392 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ +F +LG + ++ +L + P IQ MA P + G I ++G+GKTLA+ +P
Sbjct: 14 AKTTFADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIP 73
Query: 326 VIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
++Q++ + +G + P+ ++++PT ELA QV S+ +++ R + + GG
Sbjct: 74 ILQKVVLKTDEGFDQLDPKDKPQALVMSPTRELAQQVGSDL-AIAGRDRHARVLTIYGGV 132
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
QL+ L++GVDV++ TPGR + L+ G L L ++R A+LDE D + D F +Q+
Sbjct: 133 GYDDQLDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEML-DLGFLPDVQA 191
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
L+ +P + Q + +AT+P V+M R++ + + G
Sbjct: 192 LLDRTPASRQTMMFSATMPA--------------VIMSLARSRLN---QPVNIRAEGRDA 234
Query: 505 SDKTPETA-------FLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKET 557
P+T L+K + ++++ + K +VF +++ + D ++
Sbjct: 235 QATVPQTTQFIYQAHELDKPEMIGKMLQSEGMRKMMVFTRTKRAAQRLAD-----DLRDR 289
Query: 558 RVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPR 617
H L+Q R MK F + + LV TD A+RGID V HVV ++ P
Sbjct: 290 GFEAASLHGDLNQSQREKTMKRFRNDKIQ----VLVATDVAARGIDVDDVTHVVNYEVPD 345
Query: 618 DPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649
DP +YV R+GRT R AG G A V + V+
Sbjct: 346 DPEQYVHRIGRTGR-AGHEGVAVTLVDWQDVT 376
>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
Eklund 17B]
gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
Eklund 17B]
Length = 432
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 185/378 (48%), Gaps = 37/378 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L + + +L + P+ IQ + P ++ GK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FKDLNIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ Q + S PR + ILAPT ELA Q+ N SK ++ V+ GG Q
Sbjct: 63 IAQNQ------KKSDKPRTIKALILAPTRELAIQIEENFTLYSKH-TNIKNTVIFGGVSQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
K Q L EGVD+LIATPGR + LI + + L N++ +LDE D +F D ++ ++
Sbjct: 116 KPQTRILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMF-DMGMVRDVKKIV 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q L +AT+P E+ + + + D KV + P V + D +
Sbjct: 175 AKLPKVRQNLLFSATMPSEVKSLVNSILKDPVKVEVAP-------------VSSTIDTIT 221
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+KKS L+ L++ + +VF T NI+K + T + + H
Sbjct: 222 QGVYFVTKKDKKSLLVHLLKDESIKSLLVFSR---TKYGANNIVKDLAKTGTESQAI--H 276
Query: 566 AALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
Q N ++ S KE ++ LV TD A+RGID G+ HV+ +D P P YV
Sbjct: 277 GNKSQ-----NARQLALSNFKEGKIRVLVATDIAARGIDVDGLSHVINYDLPDVPETYVH 331
Query: 625 RVGRTARGAGGTGKAFIF 642
R+GRT R AG +G A F
Sbjct: 332 RIGRTGR-AGNSGVAISF 348
>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
Length = 574
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 193/393 (49%), Gaps = 30/393 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL +++++ + P+ IQA A PP +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMISL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++LAPT ELA+QV N + SK +++++ GG K Q
Sbjct: 64 LSK------GRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLI-GGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + ++ G L L ++ ++DE D + D F ++ + +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V V S + + L+ K
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTFLSAPVKVEVARAATTSETITQGLI-----WHEPKR 229
Query: 509 PETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +K++ L IE + I+FCN+ V V LK+ P H
Sbjct: 230 REFGAKDKRNILRATIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHG-----YNAEPIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R+ + F R E R FL +D A+RG+D V HV FD P +YV R+
Sbjct: 285 DLDQSHRMKVLNGF---REGEIR-FLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVV---GKQVSLAQRIME 656
GRT R AG TG AF KQ++ + +++
Sbjct: 341 GRTGR-AGRTGTAFTIATPNDAKQLAAVEELVK 372
>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Length = 502
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 190/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 15 SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 75 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISRM 188
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 189 VPPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 244
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P ++IVF T E + K + +V H
Sbjct: 245 KTD----LLKKS-----LNENPDGRSIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 290
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 291 NKSQGQRERALKGFKDGEIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 346
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 347 GRTAR-AGRDGIAIAFCAPDETRLLHDI 373
>gi|401827392|ref|XP_003887788.1| ATP-dependent RNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392998795|gb|AFM98807.1| ATP-dependent RNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 493
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 196/409 (47%), Gaps = 32/409 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F++ G ++E L + F P+ IQA +P + G+ + Q+GSGKTL+++LP +
Sbjct: 87 QKFEDAGFPSRVVEDLAAKGFEGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPAL 146
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQ 386
+ ++ Q L + P V++LAPT EL Q+ CG+ RS V GG
Sbjct: 147 --VHAKDQQPLRRGD--GPIVLVLAPTRELVMQIKKVADEF--CGMFNLRSTAVYGGASS 200
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ L EG +V+IATPGR + L +G L + +LDE D + D FE L+ +I
Sbjct: 201 QPQIRALHEGAEVVIATPGRLIDLHDQGHAPLGRVTFLVLDEADRML-DMGFEPQLRKII 259
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ + Q L +AT P E+ D +VV+G + + +++ + CSG ++
Sbjct: 260 PKTNGSRQTLMWSATWPREVRGLAESYMSDYIQVVIGNEELKTNSKIKQVIEVCSGREKE 319
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
DK LL +++K K IVFCN TC +E +L R + H
Sbjct: 320 DK------------LLGVLDKFKGDKVIVFCNMKRTCDDLEYVLNR-----SGYGAAALH 362
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F + R R L+ T+ A RG+D + V+ FDFP +YV R
Sbjct: 363 GDKSQNIRDKVLDDFRSGR----RPILIATEVAGRGLDVNDIKLVINFDFPGTCEDYVHR 418
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
+GRTARG G + F A+ ++ R+ + VPS E M
Sbjct: 419 IGRTARGNTKEGISHTFFTINDKGNARELIRMLREAKQV--VPSDLEDM 465
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 189/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + +TS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q + L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI KL + R +E + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEI-KKLAATY-----------LRNPQTIEVARSNST 228
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+ E A +K A++QLI + + + IVFCN + ++ L+R T +
Sbjct: 229 ATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAI- 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 288 ----HGDRSQSERMQALDAFKRGEVEA----LVATDVAARGLDIAELPAVINFDLPFNAE 339
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 340 DYVHRIGRTGR-AGASGDAL 358
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|386024278|ref|YP_005942583.1| DEAD/DEAH box helicase [Propionibacterium acnes 266]
gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
266]
Length = 564
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 54 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 172
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L + R +LDE D + D F +++LI
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEML-DLGFLPDVENLIG 231
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 283
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 284 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 334
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 335 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 390
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 391 IGRTGR-AGAKGLAVTLV 407
>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 589
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 192/403 (47%), Gaps = 30/403 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S +F+ +G + ++ +L + +P+ IQA A P V++GK + Q+G+GKT A+ L
Sbjct: 1 MSEITFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFAL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ RL + + ++T R +IL+PT ELA+Q+ + + + FR V+ GG
Sbjct: 61 PILHRLAENRVAPRPRTT----RALILSPTRELATQIGDSFKQYG-AHLGFRVAVIFGGV 115
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q LQ+G+DVL+A PGR + I++ L L +LDE D + D F ++
Sbjct: 116 KYGAQERALQQGLDVLVAAPGRLLDHIQQKTLDLSTCEIFVLDEADQML-DLGFIKPIRQ 174
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++S P Q LF +AT+P EI E+ D KV + P + + + G
Sbjct: 175 IVSRIPAKRQNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQG-- 232
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K++ L +L ++ +VF KV L + V
Sbjct: 233 -----------KKRALLTELFSDPAYTRCLVFTKTKHGADKVAAYL-----EAGGVEAGA 276
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R ++ F + + LV TD A+RGID V HVV F+ P P YV
Sbjct: 277 IHGNKSQPQRERALEAFKNGKLR----VLVATDIAARGIDVDKVTHVVNFELPYVPEAYV 332
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
R+GRTAR AG G A FV G ++ L + I + R+ P D
Sbjct: 333 HRIGRTAR-AGKDGTAISFVAGDEMKLLKDIEKVTRQKIPAID 374
>gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
16823]
Length = 407
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 183/374 (48%), Gaps = 31/374 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + SD + + L+ F RP+ IQ A P++ G+ Q+G+GKT A+ +P+I +
Sbjct: 3 FSDYPISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPIIHK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S+ S SPR ++LAPT ELA Q+ S+ G R + GG Q Q
Sbjct: 63 L------STSRPKSKSPRCIVLAPTRELAEQIKDAFESIG-VGSNIRITAILGGLEQDKQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G DV++ATPGR L +G L L +++ +LDE D + D F ++++ S
Sbjct: 116 IQELKRGTDVIVATPGRVFDLRSQGHLSLDSIQFLVLDEADRML-DLGFAHDMKAIHKLS 174
Query: 450 PV-TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +F +AT+ +I ++ D + +S +E + D
Sbjct: 175 PQRNRQTMFFSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHGAITVEMD------ 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K+ L +I++ K +VF V C +V ++R + H +
Sbjct: 229 ------DKRFFLENIIKEYEEFKYVVFVRTKVRCERVVAAMER-----VGIHSEALHGGI 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R A ++ F + +K L+ TD A+RGID GVD+V+ +D P P +YV R+GR
Sbjct: 278 EQKDRFAVLERFKSGENK----ILITTDVAARGIDIQGVDYVINYDLPDQPEQYVHRIGR 333
Query: 629 TARGAGGTGKAFIF 642
T RG G+A F
Sbjct: 334 TGRGE-NKGQALSF 346
>gi|350412507|ref|XP_003489671.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 619
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 184/375 (49%), Gaps = 28/375 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQK 387
+ + + + P +ILAPT ELA Q+ + S G+ R+ + GG +
Sbjct: 176 INHQP----RLNRNDGPIALILAPTRELAQQIQ---QVASDFGISSQVRNTCIFGGAPKG 228
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 229 PQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVE 287
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 288 QIRPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDV 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 340 CEEYEKEGKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGD 394
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+G
Sbjct: 395 KSQQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIG 450
Query: 628 RTARGAGGTGKAFIF 642
RT R + TG A+ F
Sbjct: 451 RTGR-SQRTGTAYAF 464
>gi|335034320|ref|ZP_08527671.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|333794285|gb|EGL65631.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 502
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 190/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 15 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 75 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISRM 188
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 189 VPPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 244
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P ++IVF T E + K + +V H
Sbjct: 245 KTD----LLKKS-----LNENPDGRSIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 290
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 291 NKSQGQRERALKGFKDGEIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 346
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 347 GRTAR-AGRDGIAIAFCAPDETRLLHDI 373
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|417305545|ref|ZP_12092505.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 449
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 187/395 (47%), Gaps = 44/395 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 42 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 101
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L+ GVP V++GG
Sbjct: 102 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAS-GVPTEIAVLSGGKNMNR 153
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 154 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 212
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 213 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 255
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E + +K L L+++ + I+FC T R + + ++ E
Sbjct: 256 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCR---TKRGTDRLHRKLS-HEYGSACGA 311
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R +++ K FLV TD RGID + + H+V FD P+D +YV
Sbjct: 312 IHGDLQQRERDRVLQKLRDGNLK----FLVATDVVGRGIDISTISHIVNFDVPQDCDDYV 367
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQ----VSLAQRI 654
RVGRT R G G A+ FVV + S+ QRI
Sbjct: 368 HRVGRTGR-MGRDGVAYTFVVPGEGDILTSIEQRI 401
>gi|388257453|ref|ZP_10134632.1| putative ATP-dependent RNA helicase DeaD [Cellvibrio sp. BR]
gi|387938620|gb|EIK45172.1| putative ATP-dependent RNA helicase DeaD [Cellvibrio sp. BR]
Length = 609
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 189/403 (46%), Gaps = 36/403 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L S+ ++ ++++ + +PS IQA A P ++ G + Q+G+GKT A+ LP++ R
Sbjct: 7 FADLALSEPVMRAIQKVGYEQPSPIQAAAIPVLLAGGDILGMAQTGTGKTAAFALPLLSR 66
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + P++++LAPT ELA QV + + F + + GG TQ
Sbjct: 67 I---------DTKQAEPQILVLAPTRELAIQVAEAFQKYASEIPGFHVLPIYGGQEMTTQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L +L+ G V++ TPGR M ++ G L L NL+ +LDE D + F ++ ++ +
Sbjct: 118 LRSLKRGAHVVVGTPGRVMDHLRRGSLNLNNLKALVLDEADEMLR-MGFIDDVEWILEHT 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q +AT+P EI + + + +E+ SG
Sbjct: 177 PKTRQTALFSATMPKEIRHVCNNYLNNATEIKIASSQSTDANIEQVYWMVSG-------- 228
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK AL +++E P I+F K T E + R + AA
Sbjct: 229 ----TNKLDALTRILEVEPFDGMIIFVRTKTATVELAEKLEAR-----------GYSAAA 273
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
++E T R K +L ++ TD A+RGID V HVV +D P D YV R+G
Sbjct: 274 LNGDMNQQLRERTIERLKTNKLDIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG +GKA +FV ++ L I + +K L ++PS
Sbjct: 334 RTGR-AGRSGKAILFVAPREKRLLYTIEKATKKPITLMELPSG 375
>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
J165]
gi|422385858|ref|ZP_16465983.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
gi|422488324|ref|ZP_16564653.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422490424|ref|ZP_16566739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498196|ref|ZP_16574468.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422505958|ref|ZP_16582181.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422551928|ref|ZP_16627719.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422568340|ref|ZP_16643958.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
J165]
gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
Length = 560
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L + R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 330
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 331 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 386
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 387 IGRTGR-AGAKGLAVTLV 403
>gi|350418218|ref|XP_003491789.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 712
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 189/379 (49%), Gaps = 32/379 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 105 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 164
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + + P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 165 VHINNQPRLNRGE----GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 217
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 218 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 276
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 277 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIIEIC---Q 332
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E +K ET K S LL+ I K SK I+F + T +KV++I K R+ +
Sbjct: 333 EHEK--ET----KLSGLLREIGKDRGSKMIIF---VETKKKVDDITKAIKREG--WPAIS 381
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 382 IHGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYI 437
Query: 624 RRVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 438 HRIGRTGRCQSAGTAYAYF 456
>gi|354607288|ref|ZP_09025258.1| hypothetical protein HMPREF1003_01825 [Propionibacterium sp.
5_U_42AFAA]
gi|422431343|ref|ZP_16508221.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|422449398|ref|ZP_16526123.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422480940|ref|ZP_16557343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422483444|ref|ZP_16559833.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422507252|ref|ZP_16583456.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422513695|ref|ZP_16589818.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422534656|ref|ZP_16610580.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|422555829|ref|ZP_16631591.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|353557403|gb|EHC26772.1| hypothetical protein HMPREF1003_01825 [Propionibacterium sp.
5_U_42AFAA]
Length = 564
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 54 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 113
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 114 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 172
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L + R +LDE D + D F +++LI
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEML-DLGFLPDVENLIG 231
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 232 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 283
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+ L+K + ++++ + V K I+FC C+++ + L D + + R + H
Sbjct: 284 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDL---DDRGFKTRAI--H 334
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R +K+F R EA + LV TD A+RGID GV HV+ + P D YV R
Sbjct: 335 GDLTQVAREKALKKF---RHGEATI-LVATDVAARGIDVTGVSHVINHECPEDEKTYVHR 390
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G A V
Sbjct: 391 IGRTGR-AGAKGLAVTLV 407
>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides ATCC 17029]
gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 516
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 199/407 (48%), Gaps = 27/407 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N +K +++++ GG Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLI-GGVSFTEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 176 PFTRQTLFYSATMAPEI-ERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRK---- 230
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 231 -ERSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNAS-----PIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L+Q R+ + F R L LV +D A+RG+D V HV FD P P +YV R+
Sbjct: 285 DLEQSQRMKTLDGF---RDGSLHL-LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
GRT R AG GKA+ V I ++ P ++P F L
Sbjct: 341 GRTGR-AGRKGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSL 386
>gi|408399615|gb|EKJ78713.1| hypothetical protein FPSE_01081 [Fusarium pseudograminearum CS3096]
Length = 544
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 212/441 (48%), Gaps = 64/441 (14%)
Query: 239 GSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
G +Q +P PK + D + +F L ++++SL+ RP+ IQ
Sbjct: 88 GDKKEVQAKPAVAPKNTIQAPTDPN----TTFSALNVRPWLVQSLENMAIKRPTGIQKGC 143
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P +++G+ CI ++GSGKT+A+ +P++Q+ ++ + V+L PT ELA
Sbjct: 144 IPEILKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFA---------VVLTPTRELA 194
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK----EG 414
Q+ +++S ++++VTGG +TQ + + V+IATPGR I+ +
Sbjct: 195 LQIFEQFKAISSPQ-SLKAILVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDT 253
Query: 415 ILQLINLRCAILDEVDILFNDE-------DFEVALQSLISSSPVTA-QYLFVTATLPVEI 466
I L +R +LDE D L N D E L L P T Q L TAT+ E+
Sbjct: 254 ICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECLSVL---PPATERQTLLFTATITPEV 310
Query: 467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET-------AFLNKKSA 519
+ ++ P I PG + V C D ++ P T + K
Sbjct: 311 --RALKDMP------------IKPGKQPVFV-CEVDTQTLAIPATLKQMYIKVPVTHKEH 355
Query: 520 LLQ--LIEKSPVSKTIV-FCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
L L+ ++ V KT++ FCN+ T + ++L+ + RV H+ L Q R+ N
Sbjct: 356 YLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEH-----RVTSLHSKLPQRQRIDN 410
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
+ F R+ AR+ LV TD A+RG+D V V+ +D PRDP +Y+ RVGRTAR AG
Sbjct: 411 LARF---RASAARI-LVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTAR-AGRK 465
Query: 637 GKAFIFVVGKQVSLAQRIMER 657
G+A FV + V LA I +R
Sbjct: 466 GEAVSFVGQRDVELALTIEKR 486
>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 619
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 197/407 (48%), Gaps = 39/407 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F+ELG S+ ++ +L + P+ IQ+ + P++ GK + Q+G+GKT A+ LP
Sbjct: 4 SERTFRELGLSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ ++ ++ P++++LAPT ELA QV S +K F + + GG
Sbjct: 64 LLNKV----------TSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQS 113
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QL L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ +
Sbjct: 114 MHQQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWI 172
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P +I + D + H +E+ V S
Sbjct: 173 LEHTPEQRQLALFSATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQH--- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK AL++++E I+F +C ++ L+ + P H
Sbjct: 230 ---------NKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASS-----PLH 275
Query: 566 AALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D YV
Sbjct: 276 GDMNQQAR-----ERAVEQLKSGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVH 330
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER--NRKGHPLHDVPS 669
R+GRT R AG TG A +FV +++ + R +ER N + P+ VPS
Sbjct: 331 RIGRTGR-AGRTGMAILFVTSREMRML-RTIERATNSRISPMK-VPS 374
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 205/417 (49%), Gaps = 50/417 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ + PS IQA A PPV++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSPELLRAIEELGYETPSPIQAQAIPPVIQGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R L G + S R ++L PT ELA+QV + K + S VV GG +
Sbjct: 62 R-----LAGGKSAKSNHVRALVLTPTRELAAQVNGSVVKYGKY-LNVNSNVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G DVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QMMKLRKGSDVLVATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCSGD 502
P Q L +AT +I L + +V P +SP +E++L +
Sbjct: 175 LPEKRQNLLFSATFSDDI-RALAK-----GLVHNPEQISVSPPNATAKTVEQYLYNV--- 225
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
DK K S L +LI+++ S+ ++F + N L RF E V
Sbjct: 226 ---DKK------KKPSILAKLIKENDWSQVLIFSK----TKHGANRLSRFLESEN-VSAA 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R+ ++ F T + + LV TD A+RG+D + VV F+ P P +Y
Sbjct: 272 AIHGNKSQGARIKALEHFKTGQVRA----LVATDIAARGLDIPQLPQVVNFELPHVPEDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVS-------LAQRIMERNR-KGH-PLHDVPSA 670
V R+GRT R AG +GKA+ V + L Q+++ R +G+ P+H +P +
Sbjct: 328 VHRIGRTGR-AGESGKAYSLVCADEAKELFAIERLIQKLIPRETVEGYTPVHALPES 383
>gi|406835858|ref|ZP_11095452.1| DEAD/DEAH box helicase [Schlesneria paludicola DSM 18645]
Length = 583
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 201/411 (48%), Gaps = 36/411 (8%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++K F ELG S ++++++R F + S IQA A P ++EG I Q+GSGKT A+ +
Sbjct: 1 MTQKLFSELGLSPELLKAIERMGFEQASPIQAEAIPRLLEGHDVIGQSQTGSGKTAAFGI 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P ++ L+ T+ + +++++ PT ELASQV L+ R + + GG
Sbjct: 61 PAVE---------LADPTNRAVQILMMCPTRELASQVAEEIAKLAAFKKGVRELPIFGGQ 111
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ G ++I TPGR + IK+G L+L ++ +LDE D + D F +++
Sbjct: 112 SYDHQFRGLKAGPQIVIGTPGRLIDHIKQGTLKLNEVKMVVLDEADRML-DMGFREDIET 170
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ S P Q + +AT+P I K++E F D V P +E+F V
Sbjct: 171 ILESIPTERQIVLFSATVPPPI-RKIIERFTRDPVTVRIEATALNVPAIEQFYV------ 223
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVF-CNKIVTCRKVENILKRFDRKETRVRVL 562
E + +K L +L++ V +VF KI + E ++ R +
Sbjct: 224 ------EVDYRSKTEVLCRLLDLHDVRYGLVFGFTKIQVDQLTEALIARGYSADK----- 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H + Q R MK F R ++ L LV TD A+RG+D ++ V ++ P D +Y
Sbjct: 273 -LHGDMTQPMRERTMKRF---RDRKIEL-LVATDVAARGLDVDDLEIVFNYELPHDAEDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
V R+GRT R AG +GKA V G++ Q+I+ + P VP EL
Sbjct: 328 VHRIGRTGR-AGKSGKAISLVSGREFGRLQQIIRFTKSKIPRMSVPRLEEL 377
>gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 3 str. Tulya]
Length = 482
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQ A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L LI E + I+FCN+ + V + + R E L
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNR---KKDVSELFRSLTRHEFDAGAL- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F K+ +L LV +D A+RG+D V HV FD P +Y
Sbjct: 278 -HGDMDQRARMAMLSSF-----KDGKLRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +GKAF V
Sbjct: 332 VHRIGRTGR-AGRSGKAFTIV 351
>gi|46125837|ref|XP_387472.1| hypothetical protein FG07296.1 [Gibberella zeae PH-1]
gi|91206552|sp|Q4I662.1|DBP8_GIBZE RecName: Full=ATP-dependent RNA helicase DBP8
Length = 547
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 212/441 (48%), Gaps = 64/441 (14%)
Query: 239 GSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
G +Q +P PK + D + +F L ++++SL+ RP+ IQ
Sbjct: 91 GDKKEVQAKPVVAPKNTIQAPTDPN----TTFSALDVRPWLVQSLENMAIKRPTGIQKGC 146
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
P +++G+ CI ++GSGKT+A+ +P++Q+ ++ + V+L PT ELA
Sbjct: 147 IPEILKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFA---------VVLTPTRELA 197
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK----EG 414
Q+ +++S ++++VTGG +TQ + + V+IATPGR I+ +
Sbjct: 198 LQIFEQFKAISSPQ-SLKAILVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDT 256
Query: 415 ILQLINLRCAILDEVDILFNDE-------DFEVALQSLISSSPVTA-QYLFVTATLPVEI 466
I L +R +LDE D L N D E L L P T Q L TAT+ E+
Sbjct: 257 ICGLRRVRYVVLDEADRLLNATGPGSMLPDVEECLSVL---PPATERQTLLFTATITPEV 313
Query: 467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET-------AFLNKKSA 519
+ ++ P I PG + V C D ++ P T + K
Sbjct: 314 --RALKDMP------------IKPGKQPVFV-CEVDTQTLAIPATLKQMYIKVPVTHKEH 358
Query: 520 LLQ--LIEKSPVSKTIV-FCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
L L+ ++ V KT++ FCN+ T + ++L+ + RV H+ L Q R+ N
Sbjct: 359 YLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEH-----RVTSLHSKLPQRQRIDN 413
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
+ F R+ AR+ LV TD A+RG+D V V+ +D PRDP +Y+ RVGRTAR AG
Sbjct: 414 LARF---RASAARI-LVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTAR-AGRK 468
Query: 637 GKAFIFVVGKQVSLAQRIMER 657
G+A FV + V LA I +R
Sbjct: 469 GEAVSFVGQRDVELALTIEKR 489
>gi|449137404|ref|ZP_21772730.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
gi|448883856|gb|EMB14363.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
Length = 410
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 188/395 (47%), Gaps = 44/395 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 3 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L++ GVP V++GG
Sbjct: 63 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAR-GVPTEIAVLSGGKNMNR 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 115 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 174 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 216
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E + +K L L+++ + I+FC T R + + ++ E
Sbjct: 217 IEQRYFTIAQDDKVKLLESLLKREKPEQAIIFCR---TKRGTDRLHRKLS-HEYGGACGA 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R +++ K FLV TD RGID + + H+V FD P+D +YV
Sbjct: 273 IHGDLQQRERDRVLQKLRDGNLK----FLVATDVVGRGIDISTISHIVNFDVPQDCDDYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQ----VSLAQRI 654
RVGRT R G G A+ FVV + S+ QRI
Sbjct: 329 HRVGRTGR-MGRDGVAYTFVVPGEGDILTSIEQRI 362
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 162 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 214
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 215 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 273
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 274 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 321
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 322 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIVAAA 376
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 377 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 432
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 433 HRIGRTGR-AGASGDAL 448
>gi|348590699|ref|YP_004875161.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974603|gb|AEP37138.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 562
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 196/400 (49%), Gaps = 51/400 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++SL+R +F P+++Q + P +EGK I++ Q+GSGKT A++LP IQ
Sbjct: 5 NFADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 329 RLRQE-----ELQGLS----------KSTSGSPR----VVILAPTAELASQVLSNCRSLS 369
RL E + + +S KST+ P+ +++L PT ELA QV +
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKRGKSTANPPKYGVQILVLTPTRELAMQVADATKEFI 124
Query: 370 KC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
GV ++V GG Q+ +L V++++ATPGR + IK G ++L NL+ ILD
Sbjct: 125 YGFKGVHIATLV--GGMAYGPQINSLSREVEIIVATPGRLLDHIKAGRVKLHNLKVLILD 182
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + D F ++++++ +P Q L +AT E+ + ++
Sbjct: 183 EADRML-DMGFIHDIKNVVAETPDEKQTLLFSATFEGNTVKLAKEMLKSPERIVVSDHKE 241
Query: 488 ISPGLEEFL--VDCSGDQESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRK 544
+E+FL D G K LL+ + + P V +TIVF T R
Sbjct: 242 KHQNIEQFLFYADTVGH--------------KFKLLEALLRDPDVDQTIVFTK---TKRG 284
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
++ KR K+ + H ++Q R ++ R K LV TD A+RGID
Sbjct: 285 ACDLAKRL--KDLDFKAGELHGDMNQGQRNRTIQALQKGRIK----VLVATDVAARGIDI 338
Query: 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644
G+ HVV +D P +YV R+GRT R AG G+A+ +
Sbjct: 339 QGISHVVNYDLPMQAEDYVHRIGRTGR-AGRDGRAYTLAL 377
>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase [Anaerococcus prevotii DSM 20548]
gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
20548]
Length = 536
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 208/408 (50%), Gaps = 37/408 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + ++ ++ + +PS IQ + P ++EG I Q+GSGKT A+ +P+I+
Sbjct: 3 FNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPIIEN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +G + +IL PT EL QV L K + + V GG Q
Sbjct: 63 I----------EANGITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQ 112
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++L++GV++++ TPGR M L++ +L+L L+ +LDE D +F D F ++ ++ +
Sbjct: 113 IKSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMF-DMGFRDDMKFILDRT 171
Query: 450 PVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q F +AT+ EI ++KL + P + + +E VD DQ K
Sbjct: 172 NPNRQTCFFSATMGPEIQEFSKLYQTNP----------YEVKIKSKEVTVD-RIDQYYIK 220
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E+ K+ AL++L+E + IVFCN T RKV+ +++ +K V L H
Sbjct: 221 LKESM---KEEALMRLLEIHKANLAIVFCN---TKRKVDRLVESLTKKNYLVDGL--HGD 272
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q +R MK+F R+K ++ LV TD A+RG+D VD V +D P+ YV R+G
Sbjct: 273 LKQSSRDQVMKKF---RNKTIQI-LVATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIG 328
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELMR 675
RTAR AG +G +F + G+ + ++I + VP+ ++ R
Sbjct: 329 RTAR-AGKSGLSFSLISGRDNNRLRQIENYTKANIKQMPVPTLVQMDR 375
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 188/384 (48%), Gaps = 33/384 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP++QR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + +K +S + R +IL PT ELA+Q+ + K + SMVV GG + Q
Sbjct: 68 LSSSK---GNKVSSNNVRALILTPTRELAAQISESIEVYGKY-LNLHSMVVFGGVKINPQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++GVDVL+ATPGR + L + ++ L ILDE D + D F ++ L+++
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRML-DMGFIRDIKKLMTAL 182
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT EI + GM ++ L E VD T
Sbjct: 183 PKDRQNLLFSATFSPEIR------------ALAKGM--VNNPL-EISVDAENSTAEKVTQ 227
Query: 510 ETAFLNKK---SALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
++KK + L LI+++ + +VF T + K + + + H
Sbjct: 228 WLTAVDKKRKPAVLTHLIKENNWQQVLVFTK---TKHGANKLTKHLEAEG--LTAAAIHG 282
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F K LV TD A+RGID + VV FD P P +YV R+
Sbjct: 283 NKSQGARTKALAAFKDGSVK----ILVATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRI 338
Query: 627 GRTARGAGGTGKAFIFVVGKQVSL 650
GRTAR AG TG+A V ++ L
Sbjct: 339 GRTAR-AGNTGQALSLVCADELDL 361
>gi|340717724|ref|XP_003397328.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
terrestris]
Length = 713
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 189/379 (49%), Gaps = 32/379 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 107 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 166
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + + P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 167 VHINNQPRLNRGE----GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 219
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 220 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 278
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 279 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIIEIC---Q 334
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E +K ET K S LL+ I K SK I+F + T +KV++I K R+ +
Sbjct: 335 EHEK--ET----KLSGLLREIGKDRGSKMIIF---VETKKKVDDITKAIKREG--WPAIS 383
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 384 IHGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYI 439
Query: 624 RRVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 440 HRIGRTGRCQSAGTAYAYF 458
>gi|294084931|ref|YP_003551691.1| DEAD/DEAH box helicase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 651
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 185/373 (49%), Gaps = 30/373 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + + M+ +L R+ + P+ IQ M+ P ++ G I Q+G+GKT A+LLP++ +
Sbjct: 19 FADFDLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQ 78
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S + P+ +ILAPT ELA+Q+ +N LS + R + V GG R + Q
Sbjct: 79 LSYSP----SVRSGQPPKALILAPTRELANQISANLSRLS-ADMNIRHICVFGGARYEGQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVD+++ATPGR M L++ G + ILDE D + D F A++ + +S
Sbjct: 134 IRGLKRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHML-DLGFYPAMKHISASL 192
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P EI E D + V P + D+ + +
Sbjct: 193 PADRQTMLFSATMPPEIEKLGNEFLTDPERVKAP------------QSGITADKITQRVT 240
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
A +K+ L ++ + ++F + T R+ + + K + + V L H +
Sbjct: 241 LMAEADKRDRLCDVLNHEDTGQCLIF---VRTKRRADALSKFMEDRGFAVDTL--HGDMR 295
Query: 570 QETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F ++ RL L+ TD A+RGID AG+ HVV FD P YV R+GR
Sbjct: 296 QGLRQKVLRNF-----RDGRLQGLIATDVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGR 350
Query: 629 TAR-GAGGTGKAF 640
T R G GG +F
Sbjct: 351 TGRAGLGGLALSF 363
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/414 (31%), Positives = 210/414 (50%), Gaps = 44/414 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRML-DMGFIRDIKKILAM 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI +L + V ++ + P + + +++++ C D+
Sbjct: 175 LPAKRQNLMFSATFSDEIR-ELAKGLVNQPVEISVTP-RNAAANTVKQWI--CPVDK--- 227
Query: 507 KTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
N+KSALL QLI++ + +VF T + K + E + H
Sbjct: 228 --------NQKSALLIQLIKQEDWQQVLVFSR---TKHGANRLAKSLIQAE--ISAAAIH 274
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F +S E R+ LV TD A+RG+D + VV FD P P +YV R
Sbjct: 275 GNKSQGARTKALADF---KSGEVRV-LVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHR 330
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQ-------RIMERNR-KG-HPLHDVPSA 670
+GRT R AG G+A V ++ L + R++ER +G P+H +P +
Sbjct: 331 IGRTGR-AGALGQAVSLVSSEETKLLRDIERLINRVLERQEVEGFSPVHTLPES 383
>gi|429208395|ref|ZP_19199647.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
gi|428188650|gb|EKX57210.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
Length = 508
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 200/408 (49%), Gaps = 29/408 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N +K +++++ GG Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLI-GGVSFTEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 176 PFTRQTLFYSATMAPEI-ERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRK---- 230
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 231 -ERSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNAS-----PIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L+Q R+ + F ++ L LV +D A+RG+D V HV FD P P +YV R
Sbjct: 285 DLEQSQRMKTLDGF-----RDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHR 339
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
+GRT R AG GKA+ V I ++ P ++P F L
Sbjct: 340 IGRTGR-AGRKGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSL 386
>gi|404497891|ref|YP_006721997.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066972|ref|ZP_12704326.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195491|gb|ABB33258.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559543|gb|EHP85836.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 452
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 191/402 (47%), Gaps = 32/402 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL +++++ + P+ IQA A P +EG+ + Q+G+GKT A++LP +Q
Sbjct: 2 TFAELNLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ PRV++L PT ELA QV RS K + RS + GG +
Sbjct: 62 RLARP-----AQKPGRGPRVLVLTPTRELAQQVTDAVRSYGKF-LRIRSGAILGGMPYRE 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L VD+++ATPGR + L+ L L L ILDE D + D F + + ++
Sbjct: 116 QLRLLSAPVDLIVATPGRLVDLLDRRSLDLSRLELLILDEADRML-DMGFSDDVDRVAAA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
SP Q L TAT+ + + + + + G +E+ L + D
Sbjct: 175 SPSDRQTLLFTATMDATMARLAGRLLNEPERIEVAGTKTTHEHIEQRL-HVADD------ 227
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+ K+ LLQ LI V K I+F T R EN+ + L H
Sbjct: 228 -----LSHKNRLLQHLITDGDVRKAIIFS---ATKRDAENMAIELRSQGHSAAAL--HGD 277
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+ Q R T + K+ R+ LV TD A+RG+D +G+ HV+ FD P+ +YV R+
Sbjct: 278 MPQSAR-----NRTIAAMKQGRIRLLVATDVAARGLDVSGISHVINFDLPKFAEDYVHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
GRT R AG +G A F +VS RI + P H +P
Sbjct: 333 GRTGR-AGASGIAISFASLNEVSYLARIERYIGQTLPEHQIP 373
>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
Length = 432
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 188/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQISDEAKELGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LIS
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIS 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE IVFCNK + I ++ + + H
Sbjct: 231 ------------LIKMIEDDNPFLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D PRD Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + + +RI
Sbjct: 330 RTGR-AGNSGIAVTFATPQDEAWLRRI 355
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 195/393 (49%), Gaps = 32/393 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ ++ + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ + R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 62 LLSRGK-----RAPAKQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L +G + L +LDE D + D F ++ ++
Sbjct: 116 QISKLGKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRML-DMGFIHDIKKILKI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I N + + + + + +E+++ Q
Sbjct: 175 LPAKRQNLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQ----- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K +AL+ L++++ + +VF T I K + + + H
Sbjct: 230 -------KTAALIHLVKQNEWKQVLVFSR---TKHGANRIAKNLE--ASGLTAAAIHGNK 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F +S E R+ LV TD A+RGID + +VV FD P P +YV R+GR
Sbjct: 278 SQGARTKALANF---KSGEVRV-LVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSL---AQRIMERN 658
T R AG G+A V G + L +R++++N
Sbjct: 334 TGR-AGANGQAVSLVSGDESKLLRDIERLIKQN 365
>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 507
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 199/408 (48%), Gaps = 29/408 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N +K +++++ GG Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLI-GGVSFTEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 176 PFTRQTLFYSATMAPEI-ERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRK---- 230
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 231 -ERSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNAS-----PIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
LDQ R + F ++ L LV +D A+RG+D V HV FD P P +YV R
Sbjct: 285 DLDQSQRTKTLDGF-----RDGTLHLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHR 339
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
+GRT R AG GKAF V I ++ P ++P F L
Sbjct: 340 IGRTGR-AGRKGKAFSIAVPSDEKYLAAIESLVKQAIPRGELPEGFSL 386
>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
Length = 518
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 199/407 (48%), Gaps = 27/407 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 6 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N +K +++++ GG Q
Sbjct: 66 L------GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLI-GGVSFTEQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 119 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 178 PFTRQTLFYSATMAPEI-ERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRK---- 232
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 233 -ERSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNAS-----PIHG 286
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L+Q R+ + F R L LV +D A+RG+D V HV FD P P +YV R+
Sbjct: 287 DLEQSQRMKTLDGF---RDGSLHL-LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI 342
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
GRT R AG GKA+ V I ++ P ++P F L
Sbjct: 343 GRTGR-AGRKGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSL 388
>gi|409099575|ref|ZP_11219599.1| DEAD/DEAH box helicase [Pedobacter agri PB92]
Length = 433
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 194/374 (51%), Gaps = 29/374 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + ++++L+++ + +P+ IQ + P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 3 FKELNLIEPILKALEKEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + +K+T + + ++L PT ELA Q+ + ++ + R +V+ GG Q +Q
Sbjct: 63 LHEKHIN--TKATK-NIKALVLTPTRELAIQIEESFKAYG-SNLNLRHLVIFGGVNQHSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L++GVD+L+ATPGR + L+ +G + L + +LDE D + D F ++ +++
Sbjct: 119 VEALRKGVDILVATPGRLLDLMNQGFITLNTIELFVLDEADRML-DMGFIHDVKRVVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI + KV + P IS E + + D
Sbjct: 178 PAKRQTLFFSATMPDEIQKLANTILSSPTKVEVTP----ISSTAETIVQSVYFVDKPD-- 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KK L+ L+E + +VF T + I+K D + ++ H
Sbjct: 232 -------KKKLLIHLLEDKNIQTALVFTR---TKHGADRIVK--DLGHSGIKAAAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + +F + ++ R+ LV TD A+RGID + HV F+ P P YV R+GR
Sbjct: 280 SQNARQRALTDF---KDRKIRV-LVATDIAARGIDIDQLSHVFNFELPNIPESYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
T R AG G A F
Sbjct: 336 TGR-AGANGIAISF 348
>gi|383864227|ref|XP_003707581.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Megachile rotundata]
Length = 619
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 197/392 (50%), Gaps = 40/392 (10%)
Query: 272 ELGCSDY--MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
E DY ++E +++Q F +PS IQ A+P ++ GK I Q+G+GKTLA+LLP +
Sbjct: 221 EQAFEDYPEILEEIRKQGFTKPSPIQCQAWPVLLSGKDLIGIAQTGTGKTLAFLLPALIH 280
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ E Q +S P V+I+APT ELA Q+ S G+ +++ V GG +K Q
Sbjct: 281 I---EGQETPRSERSGPNVLIMAPTRELALQIEKEVNKYSYHGI--KAVCVYGGGSRKEQ 335
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GV+++IATPGR L++ IL + ++ +LDE D + D FE ++ +
Sbjct: 336 VNIVTKGVEIVIATPGRLNDLVEANILNISSVTYLVLDEADRML-DMGFEPQIRKTLLDI 394
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG----PGMHRISPGLEEFLVDCSGDQE 504
Q + +AT P + D +V +G +H + + +++D E
Sbjct: 395 RPDRQTVMTSATWPQGVRRLAQSYMKDPIQVFVGSLDLATVHTVMQKI--YIID-----E 447
Query: 505 SDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+KT + + Q E SP K IVF K CR V+++ D V
Sbjct: 448 EEKT---------NMMYQFFREMSPTDKVIVFFGK--KCR-VDDVAS--DLALQGVNCQS 493
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +Q R +++ + L+ TD ASRGID V HV+ +DFPRD EYV
Sbjct: 494 IHGGREQCDREQALEDLKLGEVQ----ILLATDVASRGIDIEDVTHVLNYDFPRDIEEYV 549
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
RVGRT R AG TG++ F+ K SLA+ ++
Sbjct: 550 HRVGRTGR-AGRTGESITFMTRKDWSLAKELI 580
>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 555
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 127/388 (32%), Positives = 191/388 (49%), Gaps = 36/388 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 51 FSDLGLSDPIQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPML-- 108
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E L G S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 109 ---EILSG-SRARARMPRSLILEPTRELALQVAENFVNYGKY-LKLNHALLIGGESMAEQ 163
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + L + G L L R ++DE D + D F ++ +++
Sbjct: 164 KDVLNRGVDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRML-DMGFIPDIEKIVAML 222
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q LF +AT+ EI +L ++F P V P ++ +E LV E+D
Sbjct: 223 SPVRQTLFFSATMAPEI-RRLADMFLQNPKEITVSRPS--SVATTIETGLVVV---DEAD 276
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K + L +++ V IVFCN+ R V+ + K + + L H
Sbjct: 277 K---------RRVLRRMLRDDAVQNAIVFCNR---KRDVDVLYKSLVKHDFSAGAL--HG 322
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R A ++ F + K LVC+D A+RGID G+ HV FD P +YV R+
Sbjct: 323 DLPQSVRFATLERFKSGELK----ILVCSDVAARGIDIGGLSHVFNFDLPFHAEDYVHRI 378
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG +G A+ +LA+ I
Sbjct: 379 GRTGR-AGRSGHAYSLATPYDRALAEAI 405
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 89 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 148
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 149 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 201
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 202 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 260
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 261 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 308
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 309 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 363
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 364 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 419
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 420 HRIGRTGR-AGASGDAL 435
>gi|392305118|emb|CCI71481.1| putative ATP-dependent RNA helicase DDX17 [Paenibacillus polymyxa
M1]
Length = 535
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 191/394 (48%), Gaps = 45/394 (11%)
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
G ++ K+F LG + +E+LK Q P+ +Q + P ++EG+ I +G+GKTLA
Sbjct: 6 GSEYNLKNFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLA 65
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+LLP++Q+L ++ P+ +++APT ELA Q+ + L+ + V
Sbjct: 66 FLLPILQKLNLDKRH---------PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVY 116
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG + QL L+ G ++I TPGR + ++ G L L ++ +LDE D + + F
Sbjct: 117 GGQDVERQLRKLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLH-MGFLND 175
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF----PDCKVVMGPGMHRISPGLEEFLV 497
+++++ P Q + +AT+P I KL V+ D KV + +S + + +V
Sbjct: 176 VETILQEVPYRRQTMLFSATMPAGI-RKLARVYMNEPVDVKVKSASSVP-VSQ-IRQVVV 232
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRK 555
Q +D+ K+ AL+ ++ ++FC K+ L+ F+
Sbjct: 233 -----QTTDR-------GKQQALVDMLNTDRPYLAVIFCRTKRRASKLNEELQEMGFESG 280
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
E H L Q R MK F +EA+L LV TD A+RG+D GV HV +D
Sbjct: 281 E-------LHGDLSQNKREQVMKAF-----REAKLQLLVATDVAARGLDVEGVTHVFNYD 328
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648
P+D Y+ R+GRT R AGG G A + V
Sbjct: 329 MPQDAESYIHRIGRTGR-AGGKGVAVTLATPRDV 361
>gi|428219550|ref|YP_007104015.1| DEAD/DEAH box helicase [Pseudanabaena sp. PCC 7367]
gi|427991332|gb|AFY71587.1| DEAD/DEAH box helicase domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 215/412 (52%), Gaps = 46/412 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ L+ F P+QIQA A PP++ G + Q+G+GKT A+ LP+++
Sbjct: 3 SFVNLGISESRNHVLEELGFTEPTQIQAQAIPPLLNGNDVLGQAQTGTGKTAAFSLPLLE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV-VTGGFRQK 387
+ ++Q S + + ++LAPT ELA QV RS ++ P +V V GG
Sbjct: 63 SI---DIQ------SKTLQALVLAPTRELALQVTQAMRSFNQK--PSAKIVTVYGGQSID 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ G V++ TPGR + L+ G L+L N+R +LDE D + N F ++ +++
Sbjct: 112 RQISQLERGGQVVVGTPGRVIDLMDRGHLRLENIRFFVLDEADEMLN-MGFIQDVEKILA 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES-D 506
++P Q F +AT+P ++ +L + + ++ P M + +Q + D
Sbjct: 171 ATPADRQTAFFSATMPSQV-KRLAKSY-----LIDPVM-----------IKVEAEQRTPD 213
Query: 507 KTPETAF-----LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+ + A+ L+K+ ALL +++ +I+F + R++ ++L+ +D V
Sbjct: 214 RIEQQAYVVPRHLSKEEALLPILDLEAPHASIIFVRTKDSARRLTSMLQEYD-----YSV 268
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+H L Q R + ++ F R+++ +L +V TD A+RG+D + HV+ D P D +
Sbjct: 269 DEYHGNLTQVQRESLLRRF---RNQQVKL-VVATDIAARGLDIDSLTHVINLDIPDDLEK 324
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
YV R+GRT R AG TGKA + ++ +++ +R + + +P+ EL
Sbjct: 325 YVHRIGRTGR-AGRTGKAIAILTSRERYKVRQLEKRTGQSIEVKQLPTMAEL 375
>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
Length = 516
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 200/408 (49%), Gaps = 29/408 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N +K +++++ GG Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLI-GGVSFTEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 176 PFTRQTLFYSATMAPEI-ERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRK---- 230
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 231 -ERSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNAS-----PIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L+Q R+ + F ++ L LV +D A+RG+D V HV FD P P +YV R
Sbjct: 285 DLEQSQRMKTLDGF-----RDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHR 339
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
+GRT R AG GKA+ V I ++ P ++P F L
Sbjct: 340 IGRTGR-AGRKGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSL 386
>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 445
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 31/375 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + ++ + + P+ +Q A P +EG+ + A +G+GKT A+ LPVI+
Sbjct: 36 TFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIE 95
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + + GSPR ++++PT ELA Q+ + C L+K G R + V GG K
Sbjct: 96 RIDRAK-------KPGSPRALVVSPTRELALQIDAACTQLAK-GSGLRVVTVVGGVPYKG 147
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L GVD+L+ATPGR L++ G ++L ++ +LDE D + D F ++ ++++
Sbjct: 148 QLSKLSRGVDILVATPGRLHDLMERGDVKLRDVEILVLDEADRML-DMGFWPTMKKIVAA 206
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +ATL ++ + + D V S +E+F+V
Sbjct: 207 TPSSRQTLLFSATLDRKVMQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGS------- 259
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ K S L L+ + + IVF + LKR R H+
Sbjct: 260 -----MQKASLLRLLLAERGSKRVIVFTDTKTRAEICTGQLKR-----AGFRAESIHSDK 309
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F SK LV TD +RGID + +VV ++ P +P +YV R+GR
Sbjct: 310 TQAQRKRALAAF----SKGDVDVLVATDVLARGIDVPDIAYVVNYELPENPDDYVHRIGR 365
Query: 629 TARGAGGTGKAFIFV 643
T R AG G + FV
Sbjct: 366 TGR-AGEAGCSISFV 379
>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 538
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/388 (30%), Positives = 188/388 (48%), Gaps = 20/388 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+++ +++ + N+ P+ IQA A P + G+ + ++GSGKT A+ LP+I
Sbjct: 110 ESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMI 169
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q L Q ++ P ++LAPT ELA Q+ ++ S+ F++ +V GG
Sbjct: 170 QHCLAQPPIR-----RGDGPLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNI 224
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ GV++++ATPGRF+ +++G L + +LDE D + D FE ++ ++
Sbjct: 225 YEQRSELRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRML-DMGFEPQIREVM 283
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q L +AT+P EI L + + + V + G R+S + E +
Sbjct: 284 RSLPKKHQTLLFSATMPEEI-EALAQEYLNKPVRVKVG--RVSSPTANVTQNLEKITEKE 340
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K L L P TIVF + C +V + L E ++ H
Sbjct: 341 KIDSLLALLVDEHSQSLDSNQPPPLTIVFVERKARCDEVTDAL-----VEQGLKATALHG 395
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R A +++F + LV TD ASRG+D GV HV+ D P+ +YV R+
Sbjct: 396 GRSQSEREAALRDFRKGTTN----ILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRI 451
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG +G+A F + V L +I
Sbjct: 452 GRTGR-AGASGRATSFYTERDVFLVAQI 478
>gi|384411059|ref|YP_005620424.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|335931433|gb|AEH61973.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 506
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 185/377 (49%), Gaps = 32/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S +++++ + P+ +QA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMID 75
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + PR +IL PT ELA+QV N K S+++ GG
Sbjct: 76 ILAH------GRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLI-GGVPMAE 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR + L + G + L + ++DE D + D F ++++ +
Sbjct: 129 QQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRML-DMGFIPDIETICTK 187
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDK 507
P + Q L +AT+P I KL + F + P IS P L+D +
Sbjct: 188 LPTSRQTLLFSATMPPAI-KKLADRF-----LSNPKQIEISRPATANTLID-------QR 234
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E + +KK L ++ I+FCN+ T R++ L+ + V H
Sbjct: 235 LIEVSPRSKKKKLCDMLRAEKDHTAIIFCNRKTTVRQLATTLE-----QQGFSVGQIHGD 289
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R + ++ F + LV +D A+RG+D G+ HV FD P P +Y+ R+G
Sbjct: 290 MSQPERGSELERFKNGQIS----VLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIG 345
Query: 628 RTARGAGGTGKAFIFVV 644
RT RG G +G+A FV
Sbjct: 346 RTGRG-GASGEALTFVT 361
>gi|393722546|ref|ZP_10342473.1| DEAD/DEAH box helicase, partial [Sphingomonas sp. PAMC 26605]
Length = 480
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 196/409 (47%), Gaps = 40/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +L+ + + P+ IQ + P ++EG + Q+G+GKT A++LP IQ
Sbjct: 2 TFAQLGLAEPLVRALEAKGYTTPTPIQKQSIPILLEGGDLLGIAQTGTGKTAAFVLPSIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT---GGFR 385
L E + L R+++LAPT ELASQ+ + R K F M V GG
Sbjct: 62 HLVNNEKRVLPTHC----RMLVLAPTRELASQIAESAREYGK----FSKMSVATVFGGTS 113
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+++ GVD+L+ATPGR + LI++ + L L +LDE D + D F AL+ +
Sbjct: 114 INKNRQDMARGVDILVATPGRLLDLIEQRFVSLAMLEILVLDEADQML-DLGFIHALRKI 172
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+P I + D + V + +++F+
Sbjct: 173 VRMLPKQRQTLFFSATMPNAIRELANQFLNDPQTVKVAPTSSTAERVDQFVT-------- 224
Query: 506 DKTPETAFLNK--KSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
FLN+ K ALL L+ V + +VF +V +L +
Sbjct: 225 -------FLNQGEKQALLTILLRDEKVERALVFTRTKHGADRVVKLLAANGMDSNAI--- 274
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + EF + ++K LV TD A+RGID +GV HV F+ P P +Y
Sbjct: 275 --HGNKSQPQRERALAEFKSGKAK----VLVATDIAARGIDVSGVSHVFNFELPNVPEQY 328
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
V R+GRTAR AG +G A FV + + + I + + + +P F
Sbjct: 329 VHRIGRTAR-AGASGTAISFVADDERTYLRDIEKLTKVKPEMMQLPEGF 376
>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
Length = 623
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 199/405 (49%), Gaps = 39/405 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP++
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++ ++ +P++++LAPT ELA QV S +K F + + GG +
Sbjct: 66 NKV----------TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ ++
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLK-MGFIDDIEWILE 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q +AT+P +I + + + H +E+ V S
Sbjct: 175 HTPPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQH----- 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK AL++++E I+F +C ++ L+ + P H
Sbjct: 230 -------NKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASS-----PLHGD 277
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D YV R+
Sbjct: 278 MNQQAR-----ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMER--NRKGHPLHDVPS 669
GRT R AG TG A +FV +++ + R +ER N + P+ VPS
Sbjct: 333 GRTGR-AGRTGMAILFVTSREMRML-RTIERATNSRISPMK-VPS 374
>gi|383862185|ref|XP_003706564.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 713
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 30/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 106 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 166 VHINNQP----RLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 218
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 219 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 277
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
I Q L +AT P E+ + D ++ +G + + + + C QE
Sbjct: 278 IEQIRPDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIIEIC---QE 334
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+K ET K S LL+ I K K I+F + T +KV++I K R+ +
Sbjct: 335 HEK--ET----KLSGLLREIGKDRGGKMIIF---VETKKKVDDITKAIKREG--WPAISI 383
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 384 HGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYIH 439
Query: 625 RVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 440 RIGRTGRCQSAGTAYAYF 457
>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
51172]
gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
51172]
Length = 550
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 209/408 (51%), Gaps = 37/408 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL S+ + ++ F PS IQ PP+++GK I Q+G+GKT A+ +P+I++
Sbjct: 17 FKELYISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIPIIEK 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ E GL+++ ++L PT EL QV +L+K + + V GG + Q
Sbjct: 77 I---EANGLTQA-------LVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQIVKQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GV++++ TPGR M L++ +L+L NL+ +LDE D +F D F ++ ++ ++
Sbjct: 127 IKALKKGVEIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMF-DMGFRDDMKFILDAT 185
Query: 450 PVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q F +AT+ EI ++K+ + P I +E V+ DQ K
Sbjct: 186 NDDRQTCFFSATMGKEISEFSKIYQKNPVT----------IKIKAKELTVN-KIDQHFIK 234
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E +K+ L +L+E + I+FCN T RKV+ +++ +K V L H
Sbjct: 235 LKEA---DKEETLTRLLEINKPRLAIIFCN---TKRKVDKLVESLSKKSYLVDGL--HGD 286
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R MK+F + LV TD A+RG+D VD V+ +D P+ YV R+G
Sbjct: 287 LKQTQRDIVMKKFRNNTID----ILVATDVAARGLDVDDVDMVINYDLPQLDEYYVHRIG 342
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELMR 675
RTAR AG +G ++ + G+ + I + + +PS ++ R
Sbjct: 343 RTAR-AGRSGLSYSLISGRDNERLKAIEKYTKATIKQAQIPSLVQMDR 389
>gi|221131953|ref|XP_002164829.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Hydra
magnipapillata]
Length = 674
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 195/393 (49%), Gaps = 29/393 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF EL DY+ ++L++ NF P+ IQ+ F + G++ + Q+GSGKT++++LP +
Sbjct: 106 QSFDELCIPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLPAV 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + + P ++L PT ELA QV S RS + GG +
Sbjct: 166 IHINNQP----PLNQGDGPICLVLCPTRELAIQVQSVAGQFG-LTTRVRSTCIYGGASKG 220
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +L+ G ++++ATPGR + LI+ + L + +LDE D + D FE ++ +I
Sbjct: 221 PQIRDLERGSEIVVATPGRLIDLIEIRKISLKRVTYLVLDEADRML-DMGFEPQIRKIID 279
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESD 506
Q L +AT P E+ KL E F + + G I +VD + E D
Sbjct: 280 QIRPDRQVLMWSATWPKEV-RKLAEDFLTDYIQINIGSSDIHANHNILQIVDVCEEYEKD 338
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ K LL+ I +KTI+FC T RK ++I +R RK+ + H
Sbjct: 339 R--------KLVKLLEEIMGEKENKTIIFCE---TKRKTDDITRRL-RKDG-WPAMCIHG 385
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +KEF + ++ L+ TD ASRG+D ++ VV +D+P +Y+ R+
Sbjct: 386 DKSQPEREWVLKEFRSGKAP----ILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRI 441
Query: 627 GRTARGAGGTGKAFIFVV---GKQVSLAQRIME 656
GRTAR AG TG A+ F GK + ++ME
Sbjct: 442 GRTAR-AGNTGTAYTFFTSANGKYAAELLKVME 473
>gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM
3043]
Length = 568
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 183/381 (48%), Gaps = 36/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL ++ +L+ + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +LQ P+V++LAPT ELA QV ++ + + + GG +
Sbjct: 70 RL---DLQ------RREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYRE 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G V++ TPGR + + G L+L L +LDE D + F ++ ++S
Sbjct: 121 QLSGLRRGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLR-MGFIDDVKRVVSD 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P AQ +F +ATLP EI + D + + + G+E+ LV G
Sbjct: 180 TPKDAQRVFFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGA----- 234
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK-VENILKRFDRKETRVRVLPFHAA 567
K AL +L+E PV IVF C VE +L R V
Sbjct: 235 -------KLEALSRLLEVEPVDAAIVFVRTRAACTTLVEQLLLRG------VNAAALSGD 281
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ +++E T R K ++ L+ TD A+RG+D + HV +D P+D Y R+
Sbjct: 282 LDQ-----SLRERTVERLKRGKVDVLIATDVAARGLDVPRITHVFNYDLPQDAEAYTHRI 336
Query: 627 GRTARGAGGTGKAFIFVVGKQ 647
GRT R AG TG A F G++
Sbjct: 337 GRTGR-AGRTGVAITFAGGRE 356
>gi|407685080|ref|YP_006800254.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
gi|407246691|gb|AFT75877.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
Length = 483
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 206/401 (51%), Gaps = 46/401 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG+ R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLK 173
Query: 448 SSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT EI K + P + P + +++ LV
Sbjct: 174 LLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVQQHLVTI------ 225
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV--LP 563
DK+ +T +AL+ LI++ + +VF + ++ R K TR ++
Sbjct: 226 DKSKKT------TALICLIKQQKWEQVLVFS-------RTKHGANRIAEKLTRSKIPSAA 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + +F K LV TD A+RGID + + VV D P ++YV
Sbjct: 273 IHGNKSQGARTKALADFKNGAIK----VLVATDIAARGIDISELPIVVNLDLPNTAADYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMER 657
R+GRT R AG +G+A+ FV +++ +L Q+++ R
Sbjct: 329 HRIGRTGR-AGASGQAWSFVCAEELQNLKDIETLIQKLLPR 368
>gi|381188780|ref|ZP_09896340.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379649418|gb|EIA07993.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 419
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 188/372 (50%), Gaps = 27/372 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL S + ++ Q + P+ IQ + P V+ GK I Q+G+GKT A+ +P+I +
Sbjct: 3 FEELSLSKSIQRAVYEQGYTNPTPIQEQSIPLVLAGKDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G SK + R +++ PT ELA Q+ + + K + + GG Q Q
Sbjct: 63 LHR--IVGSSKK-AKQIRALVVTPTRELAVQIGQSFDTYGKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD+LIATPGR + L K+G + L +L C +LDE D + D F ++ ++ +
Sbjct: 119 VDALKNGVDILIATPGRLLDLHKQGFIDLDHLHCLVLDEADQML-DMGFVNDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLFFSATMPIAI-RELAEMF-----LTKPETVTVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K++ L LI+ ++ +VF T +N++K ++ + H
Sbjct: 226 FVEKTEKRNLLYNLIKNENLTDVLVFSR---TKHGADNVVKAL--RKNNIAAEAIHGDKS 280
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R ++ F ++KE + LV TD A+RGID + +V+ FD P P YV R+GRT
Sbjct: 281 QNARQRVLEAF---KNKEVGV-LVATDIAARGIDIDQLPYVINFDLPNIPETYVHRIGRT 336
Query: 630 AR-GAGGTGKAF 640
R G GG +F
Sbjct: 337 GRAGNGGVAISF 348
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 192/377 (50%), Gaps = 36/377 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E G ++ ++ ++K + + P+ IQ P + EG+ + Q+G+GKT A++LP++
Sbjct: 2 KNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL ++ K+ + R +ILAPT ELASQ+ + R+ + P + V+ GG +
Sbjct: 62 TRLAEDR----KKAAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVA-VIFGGVKPG 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L +G+D++IATPGR + G ++L +LDE D + D F A++ ++
Sbjct: 117 PQLRALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQML-DLGFAPAIRRILG 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q + ++AT+P++I N E + ++ + P +S +E+ DQ
Sbjct: 176 KLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAP----VSRPIEKI------DQS-- 223
Query: 507 KTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
FLN K++ALL ++ + + + IVF +V L++ +
Sbjct: 224 ----VRFLNSSSKRAALLDILSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAI---- 275
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R ++ F R K LV TD A+RGID GV HVV ++ P P YV
Sbjct: 276 -HGNKSQRNREKSLDGFKNGRIK----ILVATDIAARGIDIDGVSHVVNYELPNVPEAYV 330
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRTAR AG +G A
Sbjct: 331 HRIGRTAR-AGKSGVAV 346
>gi|440715013|ref|ZP_20895574.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436440072|gb|ELP33446.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 416
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 187/395 (47%), Gaps = 44/395 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 9 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L+ GVP V++GG
Sbjct: 69 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAS-GVPTEIAVLSGGKNMNR 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 121 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 180 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 222
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E + +K L L+++ + I+FC T R + + ++ E
Sbjct: 223 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCR---TKRGTDRLHRKLS-HEYGSACGA 278
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R +++ K FLV TD RGID + + H+V FD P+D +YV
Sbjct: 279 IHGDLQQRERDRVLQKLRDGNLK----FLVATDVVGRGIDISTISHIVNFDVPQDCDDYV 334
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQ----VSLAQRI 654
RVGRT R G G A+ FVV + S+ QRI
Sbjct: 335 HRVGRTGR-MGRDGVAYTFVVPGEGDILTSIEQRI 368
>gi|429961399|gb|ELA40944.1| hypothetical protein VICG_02033 [Vittaforma corneae ATCC 50505]
Length = 508
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 195/407 (47%), Gaps = 28/407 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF + + ++ + + + P+ IQA +P + G+ + +GSGKT++++LP
Sbjct: 88 RSFSSVSFPEEVLRHFEAKGYANPTPIQAQGWPMALSGRDMVGIADTGSGKTISFVLPA- 146
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + Q + G P V+ILAPT EL +Q+ + R + RS V GG
Sbjct: 147 --LIHAQSQPPLREDDG-PIVLILAPTRELCTQIETVVREYTPY-YNLRSCAVYGGASIV 202
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ G++VL+ATPGR + L K+G L + +LDE D + D FE L ++I
Sbjct: 203 PQKRALKRGIEVLVATPGRLIDLHKQGFCPLGRVTFLVLDEADRML-DMGFEPQLNAIIP 261
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT P E+ D +++ G E+ + Q+ D
Sbjct: 262 QTNENRQNLMWSATWPREVRALAANYMKD--------YIQVTIGDEDLKANVKIVQKVDI 313
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ +KK LL ++ S+ IVFCN TC +E+ L + R V H
Sbjct: 314 VD---WQDKKKKLLYYLQDFKTSRVIVFCNMKKTCDTLEDYLL-----DNRFHVAALHGD 365
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R ++ F + R L+ TD A+RG+D V V+ +DFP++ +YV R+G
Sbjct: 366 KSQAARDTVIQNFKSGRIS----ILIATDVAARGLDVENVKCVINYDFPKNIEDYVHRIG 421
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
RTARG+ G A+ G+ A+++++ R+ + VP+ E M
Sbjct: 422 RTARGSSSEGLAYTMFTGEDAPNARKLIDIIRQAN--QTVPTDLESM 466
>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
Length = 524
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 199/407 (48%), Gaps = 27/407 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITI 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N +K +++++ GG Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLI-GGVSFTEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 176 PFTRQTLFYSATMAPEI-ERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRK---- 230
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 231 -ERSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNAS-----PIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L+Q R+ + F R L LV +D A+RG+D V HV FD P P +YV R+
Sbjct: 285 DLEQSQRMKTLDGF---RDGSLHL-LVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
GRT R AG GKA+ V I ++ P ++P F L
Sbjct: 341 GRTGR-AGRKGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSL 386
>gi|349699188|ref|ZP_08900817.1| DNA/RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 524
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/426 (31%), Positives = 202/426 (47%), Gaps = 50/426 (11%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS 307
P D P+Q ++ F ELG S+ + +++ + P+ IQA A P V+ G+
Sbjct: 37 PEDAPEQE----------AQPLFSELGLSEPIQQAIDEMGYRHPTPIQAQAIPYVLMGRD 86
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
+ Q+G+GKT ++ LP++ E L G S++ + PR +IL PT ELA QV N +
Sbjct: 87 VLGVAQTGTGKTASFTLPML-----EILSG-SRARARMPRSLILEPTRELALQVAENFVN 140
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
K + ++ GG Q E L GVDVLIATPGR + L + G L L + ++D
Sbjct: 141 YGKH-LKLTHALLIGGESMAEQKEVLNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVID 199
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG 484
E D + D F ++ ++ Q +F +AT+ EI +L ++F P V P
Sbjct: 200 EADRML-DMGFIPDIEKIVGMLSPLRQTMFFSATMAPEI-RRLADMFLRNPKEITVSRPS 257
Query: 485 --MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTC 542
I GL +VD K+ AL +L+ + + IVFCN+
Sbjct: 258 SVASTIETGLA--IVDAR--------------EKRRALRKLLNAADMQNAIVFCNR---K 298
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGI 602
R V+ + K + L H L Q R + ++ F + K LVC+D A+RGI
Sbjct: 299 RDVDVLCKSLIKHGFSAGAL--HGDLAQSLRFSTLEAFKSGELK----ILVCSDIAARGI 352
Query: 603 DFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
D G+ HV FD P +YV R+GRT R AG TG A+ + +L Q I + K
Sbjct: 353 DIGGLSHVFNFDVPFHAEDYVHRIGRTGR-AGRTGHAYTLATPDEEALVQAIEKLTGKPI 411
Query: 663 PLHDVP 668
P ++P
Sbjct: 412 PRIEIP 417
>gi|449449653|ref|XP_004142579.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 191/384 (49%), Gaps = 38/384 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG S + +KR+ + P+ IQ P ++ G + ++GSGKT A+L+P+++R
Sbjct: 31 FESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLER 90
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+Q E Q G R +IL+PT +LA Q L + L K R ++ GG +TQ
Sbjct: 91 LKQHEPQ-------GGVRALILSPTRDLALQTLKFTKELGKF-TDLRISLLVGGDSMETQ 142
Query: 390 LENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E L + DV+IATPGR M + E + L + + DE D LF D F L +++
Sbjct: 143 FEELAQSPDVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCLF-DMGFAEQLHKILAQ 201
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +ATLP + D ++V +ISP L+ ++
Sbjct: 202 LSENRQTLLFSATLPSVLAEFAKAGLRDPQLVRLDLDTKISPDLKVVFFTLRQEE----- 256
Query: 509 PETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVE--NILKRFDRKETRVRVLPF 564
K +ALL LI + S ++++F + T VE N+L R + E V
Sbjct: 257 -------KNAALLYLIREQISADQQSLIF---VSTRHHVEFLNVLFREEGIEPSV----C 302
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+ +DQ+ R ++ F R+ +FL+ TD A+RGID +D+V+ +DFP P +V
Sbjct: 303 YGEMDQDARKIHISRFRARRT----MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 358
Query: 625 RVGRTARGAGGTGKAFIFVVGKQV 648
RVGR AR AG TG AF FV + +
Sbjct: 359 RVGRAAR-AGRTGTAFSFVTSEDL 381
>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
mellifera]
Length = 726
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 189/379 (49%), Gaps = 32/379 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 106 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + LS+ P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 166 VHINHQPR--LSRGD--GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 218
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 219 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 277
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 278 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIVEIC---Q 333
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E +K K S LL+ I K SK I+F + T +KV++I K R+ +
Sbjct: 334 EHEKEM------KLSNLLREIGKDRGSKMIIF---VETKKKVDDITKAIKREG--WPAIS 382
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 383 IHGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYI 438
Query: 624 RRVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 439 HRIGRTGRCQSAGTAYAYF 457
>gi|449511783|ref|XP_004164052.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 191/384 (49%), Gaps = 38/384 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG S + +KR+ + P+ IQ P ++ G + ++GSGKT A+L+P+++R
Sbjct: 31 FESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLER 90
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+Q E Q G R +IL+PT +LA Q L + L K R ++ GG +TQ
Sbjct: 91 LKQHEPQ-------GGVRALILSPTRDLALQTLKFTKELGKF-TDLRISLLVGGDSMETQ 142
Query: 390 LENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E L + DV+IATPGR M + E + L + + DE D LF D F L +++
Sbjct: 143 FEELAQSPDVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCLF-DMGFAEQLHKILAQ 201
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +ATLP + D ++V +ISP L+ ++
Sbjct: 202 LSENRQTLLFSATLPSVLAEFAKAGLRDPQLVRLDLDTKISPDLKVVFFTLRQEE----- 256
Query: 509 PETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRKVE--NILKRFDRKETRVRVLPF 564
K +ALL LI + S ++++F + T VE N+L R + E V
Sbjct: 257 -------KNAALLYLIREQISADQQSLIF---VSTRHHVEFLNVLFREEGIEPSV----C 302
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+ +DQ+ R ++ F R+ +FL+ TD A+RGID +D+V+ +DFP P +V
Sbjct: 303 YGEMDQDARKIHISRFRARRT----MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 358
Query: 625 RVGRTARGAGGTGKAFIFVVGKQV 648
RVGR AR AG TG AF FV + +
Sbjct: 359 RVGRAAR-AGRTGTAFSFVTSEDL 381
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/373 (30%), Positives = 181/373 (48%), Gaps = 32/373 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + +++++ RQ + P+ IQ A P +++ + I Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E +G+ + +IL PT ELA Q+ N +P R V+ GG Q
Sbjct: 62 NLASERRKGI--------KALILTPTRELAIQIQENFEHYG-THLPLRCTVIFGGVSQVP 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVD+LIATPGR LI +G + + + +LDE D + D F ++ ++++
Sbjct: 113 QVERLRRGVDILIATPGRLCDLINQGYVDISQIEVFVLDEADRML-DMGFIRDVKKVLNA 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI EV + ++ P ++ P V +
Sbjct: 172 LPKKRQTLLFSATMPKEI-----EVLANT-ILHDPVTVKVDP------VTSTASSIHQHV 219
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK+ L +L+ V +VF T + ++K ET + + H
Sbjct: 220 YLIDKGNKRRLLAKLLRGREVGSALVFTR---TKHAADKVVKEL--AETGMVAMAIHGNK 274
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R +K F + K LV TD A+RGID + HV ++ P +P Y+ R+GR
Sbjct: 275 SQNARQTALKRFKSGDIK----ILVATDIAARGIDIPELSHVFNYELPNEPETYIHRIGR 330
Query: 629 TAR-GAGGTGKAF 640
T R G GG +F
Sbjct: 331 TGRAGLGGVAISF 343
>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 417
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 193/405 (47%), Gaps = 30/405 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD+ +L + P+ IQ A P V++G I A ++GSGKT ++LP++
Sbjct: 2 SFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQK 387
E+L + + ++L PT ELA QV + S+ C RS+ + GG
Sbjct: 61 ----EKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAIN 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+++L +G D+++ATPGR + L+++ L L L+ +LDE D + D F L ++
Sbjct: 117 PQMQSLSKGCDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRML-DLGFADELDDILD 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q L +AT P ++ +L E V + P DQ +
Sbjct: 176 QTPGNVQTLLFSATFPDKV-KELTEELLRNPVEISVKQEATLP-----------DQLHQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E N+ L LI++ + ++F T +E L R + ++ H
Sbjct: 224 AIEVDRNNRTMLLKHLIKQEKWQQLLIFVGSKRTANNIELKLYR-----SGIQSSTLHGD 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q+ RL +++F+ R K L+ TD A+RGID + V+ +D PR S+YV R G
Sbjct: 279 LTQKERLGALEDFSKGRCK----ILIATDLAARGIDIPSLPCVLNYDLPRATSDYVHRAG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
RTAR AG G A FV + + + I +R R P +P FE
Sbjct: 335 RTAR-AGEAGLAISFVDHESDAHFKLIEKRIRMKIPREQIP-GFE 377
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 287 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 214/408 (52%), Gaps = 33/408 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+ L S ++++L F P+ IQA A P ++G+ I Q+G+GKT A+ +PV+
Sbjct: 3 EKFQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ L+ S + + + ++L+PT ELA QV L++ +++ + GG +
Sbjct: 63 EKI-------LASSKTSNVQTIVLSPTRELAMQVAEELNHLAQY-TSIQALPIYGGQDME 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L++ +++ATPGR + +K G + L + +LDE D + D F + +++S
Sbjct: 115 RQLRRLRKHPQIIVATPGRLIDHMKRGTIHLDEISTIVLDEADEML-DMGFIDDIHTIMS 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P T Q L +AT+P I KL + F + P + R+ +E +D +Q +
Sbjct: 174 ATPETRQTLLFSATMPAPI-QKLAQTF-----LKDPQIIRMKA--KEVTMDLI-EQSYIE 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
TP+ K L +L++ I+F T R+V+ + + ++ + H
Sbjct: 225 TPDR---QKFDVLCRLLDLQEPDLAIIFVR---TKRRVDELSEALKKRGYSSEGI--HGD 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R + +++F R K + LV TD A+RG+D +GV HV +D P+DP YV RVG
Sbjct: 277 LTQAKRDSVIRQF---REKTIDI-LVATDVAARGLDISGVTHVFNYDLPQDPESYVHRVG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL-HDVPSAFELM 674
RT R AG TG+A FV+ +++ R +ER K H + H P+ E +
Sbjct: 333 RTGR-AGKTGEATTFVIPRELEHL-RAIERLIKRHIVRHQAPTLAEAL 378
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 178/377 (47%), Gaps = 31/377 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I +
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G +K+ PR +++APT ELA QV S+ +K G ++ GG Q
Sbjct: 64 L----MNGRAKARM--PRALVIAPTRELADQVASSFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + +V K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPFHAA 567
+ K+ AL LIEK+ + IVFCN+ V LK FD H
Sbjct: 227 SSDPKAKRLALRALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFD-------AAAIHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R + F K LV +D A+RG+D V HV +D P +YV R+G
Sbjct: 280 LDQSQRTKTLAAFRDGSLK----ILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVV 644
RT R AG +G ++ V
Sbjct: 336 RTGR-AGRSGVTYMLVT 351
>gi|407688996|ref|YP_006804169.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292376|gb|AFT96688.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 483
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 206/401 (51%), Gaps = 46/401 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG+ R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLK 173
Query: 448 SSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT EI K + P + P + +++ LV
Sbjct: 174 LLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVQQHLVTI------ 225
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV--LP 563
DK+ +T +AL+ LI++ + +VF + ++ R K TR ++
Sbjct: 226 DKSKKT------TALICLIKQQKWEQVLVFS-------RTKHGANRIAEKLTRSKIPSAA 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + +F K LV TD A+RGID + + VV D P ++YV
Sbjct: 273 IHGNKSQGARTKALTDFKNGAIK----VLVATDIAARGIDISELPIVVNLDLPNTAADYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMER 657
R+GRT R AG +G+A+ FV +++ +L Q+++ R
Sbjct: 329 HRIGRTGR-AGASGQAWSFVCAEELQNLKDIETLIQKLLPR 368
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 199/410 (48%), Gaps = 40/410 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ Q + PS IQA A P ++EG+ + A Q+G+GKT + LP+++
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E + S R ++L PT ELA+QV + ++ + + +S VV GG +
Sbjct: 66 ILSKGE-----NAQSNQVRALVLTPTRELAAQVAESVKNYGQH-LSLKSTVVFGGVKINP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G D+LIATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 120 QMMALRRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRML-DMGFIHDIKKILAI 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + + +E++L DK
Sbjct: 179 LPKKRQNLLFSATFSPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWL------HPVDKK 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+T L+QLI + +VF T I K+ + + +R H
Sbjct: 233 RKTEL------LIQLIADGRWDQALVFSR---TKHGANKITKQLE--DAGIRASAIHGNK 281
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F KE R+ LV TD A+RG+D + HVV FD P +YV R+G
Sbjct: 282 SQGARTRALADF-----KEGRIRILVATDIAARGLDIEQLPHVVNFDLPDVAEDYVHRIG 336
Query: 628 RTARGAGGTGKAFIFVVGKQVS-------LAQRIMERNRKGH--PLHDVP 668
RT R AG TGKA V ++ L Q+++ER + P H +P
Sbjct: 337 RTGR-AGATGKAISLVAADELDQLRAIERLTQKLIERRYEDDFMPTHMLP 385
>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 506
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 185/377 (49%), Gaps = 32/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S +++++ + P+ +QA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMID 75
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + PR +IL PT ELA+QV N K S+++ GG
Sbjct: 76 ILAH------GRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLI-GGVPMAE 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR + L + G + L + ++DE D + D F ++++ +
Sbjct: 129 QQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRML-DMGFIPDIETICTK 187
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDK 507
P + Q L +AT+P I KL + F + P IS P L+D +
Sbjct: 188 LPTSRQTLLFSATMPPAI-KKLADRF-----LSNPKQIEISRPATANTLID-------QR 234
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E + +KK L ++ I+FCN+ T R++ L+ + V H
Sbjct: 235 LIEVSPRSKKKKLCDMLRAEKDHTAIIFCNRKTTVRQLATTLE-----QQGFSVGQIHGD 289
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R + ++ F + LV +D A+RG+D G+ HV FD P P +Y+ R+G
Sbjct: 290 MSQPERGSELERFKNGQIS----VLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIG 345
Query: 628 RTARGAGGTGKAFIFVV 644
RT RG G +G+A FV
Sbjct: 346 RTGRG-GASGEALTFVT 361
>gi|408675131|ref|YP_006874879.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856755|gb|AFK04852.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 435
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 196/389 (50%), Gaps = 34/389 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L + + +L + + P+ IQ A P V+ GK I Q+G+GKT A+ +P+IQ+
Sbjct: 3 FESLNLIEPIRLALAAEGYTTPTPIQQQAIPIVLAGKDLIGVAQTGTGKTAAFSIPIIQQ 62
Query: 330 LRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFR 385
L Q+ + + G ++ +I+ PT ELA Q+ SL+ G + V+ GG +
Sbjct: 63 LYQK----VDTNRKGKRKIKALIVTPTRELAIQI---GESLAAYGANTDLKYSVIFGGVK 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q E LQ+GVD+L+ATPGR + LI +GI+ L ++ +LDE D + D F ++ L
Sbjct: 116 QGKQTEELQQGVDILVATPGRLLDLIGQGIINLSSIEIFVLDEADRML-DMGFVHDVKRL 174
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
I P Q LF +AT+P EI + + V + + +++FL
Sbjct: 175 IKLLPTKRQSLFFSATMPDEIVKLSATILNNPSSVSVTPVSSTADTIKQFLYHV------ 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
DK +K + LL++++ S + +VF T + ++K K + + H
Sbjct: 229 DKK------DKNALLLEILKDSNIETVLVFTR---TKHGADKVVKMLSGKNIKAEAI--H 277
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F +SKE R+ LV TD A+RGID + +V+ ++ P P YV R
Sbjct: 278 GNKAQNARQRALNNF---KSKETRV-LVATDIAARGIDVDDLAYVINYEIPNIPETYVHR 333
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG G AF F ++++ + I
Sbjct: 334 IGRTGR-AGSNGIAFSFCENEELTYLKDI 361
>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 645
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/409 (30%), Positives = 198/409 (48%), Gaps = 38/409 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG S + +++ + F + S IQA A P +++G+ + Q+GSGKT A+ +P I
Sbjct: 4 KLFSELGLSAELQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ + S +++IL PT ELA QV LS ++ + GG +
Sbjct: 64 EKV---------DPQNRSVQILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYE 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQS 444
Q L++G ++I TPGR M ++ G L+L ++ ILDE D++ + ED E LQ+
Sbjct: 115 RQFMGLRQGAQIVIGTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQA 174
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ P Q +F +AT+P I + + D + V P +E+F E
Sbjct: 175 V----PTERQTVFFSATMPRPIQELIQKYARDPQSVRIEQKAMTVPTVEQFFY------E 224
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
D+ + L + LI+ + IVFCN T R V++++ + + L
Sbjct: 225 VDRRFKVELLTR------LIDIHDLKLGIVFCN---TKRMVDDLVDHLNAQGYSADRL-- 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H + Q R M +F K FLV TD A+RGID V V +D P D +YV
Sbjct: 274 HGDMSQAMRDRVMNKF----RKSGLEFLVATDVAARGIDVDDVQVVFNYDLPYDAEDYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R AG +G+A FV G+++ Q I + +P+A E+
Sbjct: 330 RIGRTGR-AGRSGRAISFVAGRELFQIQHIERFTKMKIQRAKIPTADEV 377
>gi|406596808|ref|YP_006747938.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406598056|ref|YP_006749186.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406374129|gb|AFS37384.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406375377|gb|AFS38632.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
Length = 483
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 206/401 (51%), Gaps = 46/401 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG+ R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIRRVLK 173
Query: 448 SSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT EI K + P + P + +++ LV
Sbjct: 174 LLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVQQHLVTI------ 225
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV--LP 563
DK+ +T +AL+ LI++ + +VF + ++ R K TR ++
Sbjct: 226 DKSKKT------TALICLIKQQKWEQVLVFS-------RTKHGANRIAEKLTRSKIPSAA 272
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + +F K LV TD A+RGID + + VV D P ++YV
Sbjct: 273 IHGNKSQGARTKALADFKNGAIK----VLVATDIAARGIDISELPIVVNLDLPNTAADYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMER 657
R+GRT R AG +G+A+ FV +++ +L Q+++ R
Sbjct: 329 HRIGRTGR-AGASGQAWSFVCAEELQNLKDIETLIQKLLPR 368
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 192/375 (51%), Gaps = 27/375 (7%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K+FK+ G ++E++ + + + IQA++F P++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKNFKDFGFHSKILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPI 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ RL + S S + P R+++L PT ELA Q+ N +L G+P + ++ GG
Sbjct: 63 LNRLIPK--ANYSTSPAKHPVRMLVLTPTRELAEQISKNV-NLYSDGLPLKCSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+Q + L G D++IATPGR + I++ + L + +LDE D + D F L +
Sbjct: 120 INSQKQELMRGADIVIATPGRLLDHIEQRTVNLTQVEFLVLDEADRML-DMGFMPDLLRI 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+S+ P + Q L +AT I L + F + V + + + + QE
Sbjct: 179 LSNLPKSRQSLLYSATFSENI-RSLAQKFLNNPVEITVASNNSTAS--------TIKQEV 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
E+ +K +AL+ ++ + I+F N+ VTC+ +E +L +D + V H
Sbjct: 230 YSVSES---DKNAALVYILTSRAFNNVIIFSNRKVTCKNLERLLNNYD-----LAVQSLH 281
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F +S+ LV TD A+RG+D + VD V+ ++ P +YV R
Sbjct: 282 GDKSQLERTKALDLFKSSKCN----ILVATDVAARGLDISDVDAVINYELPPTSEDYVHR 337
Query: 626 VGRTARGAGGTGKAF 640
+GRT R AG G A
Sbjct: 338 IGRTGR-AGKKGIAI 351
>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
Length = 724
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 189/378 (50%), Gaps = 30/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 108 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 167
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + LS+ P V+ILAPT ELA Q+ + R S C R+ + GG
Sbjct: 168 VHINHQPR--LSRGD--GPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFGGSP 220
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 221 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 279
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
I Q L +AT P E+ + D ++ +G + + + + C QE
Sbjct: 280 IEQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEIC---QE 336
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+K ET K S LL+ I SK I+F + T +KV++I K R+ +
Sbjct: 337 HEK--ET----KLSQLLREIGTERGSKMIIF---VETKKKVDDITKAIKREG--WSAISI 385
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 386 HGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYIH 441
Query: 625 RVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 442 RIGRTGRCQSAGTAYAYF 459
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIVAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI D + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 241 EGD---------KQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIVAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIVELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 287 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1]
gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 486
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 189/383 (49%), Gaps = 37/383 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ ++K + P+ IQA A P V+E + + Q+G+GKT ++ LP++
Sbjct: 2 SFDSLGLSEKVLSAVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K GV + V + GG
Sbjct: 62 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FEKYGVNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + ++ G L L + ++DE D + D F ++ +
Sbjct: 113 ADQDRKIDRGADVLIATPGRLLDHVERGKLMLQGVEILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
P T Q LF +AT+P EI +L E F K+ + P + + +++V
Sbjct: 172 KLIPFTRQTLFFSATMPPEI-QRLTETFLQNPAKIEVAP-RSSTAENVTQYIVAAG---- 225
Query: 505 SDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ K++ L +L+ E + IVFCN+ R V + + +R V L
Sbjct: 226 ------SVDFEKRAKLRELLGEAEDLKNAIVFCNR---KRDVTTLFRSLERHGFNVGCL- 275
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +DQ TR+ ++ F K LV +D A+RG+D V HV FD P +YV
Sbjct: 276 -HGDMDQRTRMQTLESF----RKGTLTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYV 330
Query: 624 RRVGRTARGAGGTGKAFIFVVGK 646
R+GRT R AG +G ++ V G+
Sbjct: 331 HRIGRTGR-AGRSGVSYTLVTGE 352
>gi|380014980|ref|XP_003691490.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 728
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 188/378 (49%), Gaps = 30/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 108 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 167
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + LS+ P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 168 VHINHQPR--LSRGD--GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 220
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 221 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 279
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
I Q L +AT P E+ + D ++ +G + + + + C QE
Sbjct: 280 IEQIRPDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEIC---QE 336
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+K K S LL+ I K SK I+F + T +KV++I K R+ +
Sbjct: 337 HEKEM------KLSNLLREIGKDRGSKMIIF---VETKKKVDDITKAIKREG--WPAISI 385
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 386 HGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYIH 441
Query: 625 RVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 442 RIGRTGRCQSAGTAYAYF 459
>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 414
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 179/373 (47%), Gaps = 28/373 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D++ ++L + + P+ IQ A P ++EG + Q+G+GKT A+ LPV+QR
Sbjct: 3 FSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + G + R ++L PT ELA Q+ + + + + V+ GG Q Q
Sbjct: 63 LHQSRMHGEKRKI----RCLVLTPTRELAIQIGESFTAYGR-HTGLINTVIFGGVNQNPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVD+L+ATPGR + LI +G L L ++ +LDE D + D F ++ +++
Sbjct: 118 TARLVRGVDILVATPGRLLDLIGQGHLHLRDIEYFVLDEADRML-DMGFIHDIRRVLAVL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + + K VM ++P V + + + +
Sbjct: 177 PKKRQSLFFSATMPPEIIKLSAAILHNPKEVM------VTP------VSSTVEIINQQIL 224
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
NK S L L+++ + +VF KV L D + H
Sbjct: 225 FVDRENKNSLLAHLLKERNIESALVFTRTKHGADKVARFLAHHD-----ITAEAIHGNKS 279
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + F T +++ LV TD A+RGID +++V+ D P P YV R+GRT
Sbjct: 280 QNARQRALGNFKTRQTR----VLVATDIAARGIDIDELEYVINIDLPNIPETYVHRIGRT 335
Query: 630 ARGAGGTGKAFIF 642
R AG G A+ F
Sbjct: 336 GR-AGNRGAAYSF 347
>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 506
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 185/377 (49%), Gaps = 32/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S +++++ + P+ +QA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMID 75
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + PR +IL PT ELA+QV N K S+++ GG
Sbjct: 76 ILAH------GRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLI-GGVPMAE 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR + L + G + L + ++DE D + D F ++++ +
Sbjct: 129 QQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRML-DMGFIPDIETICTK 187
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDK 507
P + Q L +AT+P I KL + F + P IS P L+D +
Sbjct: 188 LPTSRQTLLFSATMPPAI-KKLADRF-----LSNPKQIEISRPATANTLID-------QR 234
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E + +KK L ++ I+FCN+ T R++ L+ + V H
Sbjct: 235 LIEVSPRSKKKKLCDMLRAEKDHTAIIFCNRKTTVRQLATTLE-----QQGFSVGQIHGD 289
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R + ++ F + LV +D A+RG+D G+ HV FD P P +Y+ R+G
Sbjct: 290 MSQPERGSELERFKNGQIS----VLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIG 345
Query: 628 RTARGAGGTGKAFIFVV 644
RT RG G +G+A FV
Sbjct: 346 RTGRG-GASGEALTFVT 361
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 263 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 308
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 309 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 364
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 365 HRIGRTGR-AGATGDAL 380
>gi|339017995|ref|ZP_08644139.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752884|dbj|GAA07443.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 436
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/417 (31%), Positives = 197/417 (47%), Gaps = 42/417 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++++L + + P+ IQA + P ++ G+ + Q+G+GKT A+ LP++
Sbjct: 3 TFSDLKLAEPLLKALAEEGYENPTPIQAQSIPHLLAGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L+ + RV+ILAPT EL SQ+ + ++ ++ + F VV GG Q
Sbjct: 63 HL----LKNPKPAGPKKARVLILAPTRELVSQISESFKAYARH-MKFTQAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+A PGR + LI +G + L L +LDE D + D F ++ +++
Sbjct: 118 QVEAMRRGVDVLVAAPGRLLDLIGQGYIDLSALEVLVLDEADRML-DMGFVRDIRRIMTF 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQE 504
P Q L +AT+P I + + D KV + P + RI + VD S
Sbjct: 177 LPAKRQTLLFSATMPRSIADLASSLLHDPAKVEVTPPSSTVDRIQQAV--MFVDGS---- 230
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
NK+ ALL L+E V + +VF KV L + +
Sbjct: 231 ----------NKRDALLTLVESPKVVRAVVFTLMKHEANKVAEFLNK-----NSIVAEAI 275
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R MK F K LV TD A+RGID V HV +D P P YV
Sbjct: 276 HGNKSQGARERAMKGFRAGSVK----VLVATDIAARGIDVDDVSHVFNYDLPNVPESYVH 331
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG------HPLHDVPSAFELMR 675
R+GRTAR AG G A F +Q + + I + K HP H + + MR
Sbjct: 332 RIGRTAR-AGRDGWAVSFCDPEQRAWLRDIEKTIGKSIPVVRDHPWHSMDAENSTMR 387
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 40/412 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG +D +++++ Q + PS IQA A PP+++G + A Q+G+GKT + LP++
Sbjct: 2 TFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +++ R ++L PT ELA+QV + ++ K +P RS VV GG +
Sbjct: 62 RLASGK-----PASANQVRALVLTPTRELAAQVADSVQTYGKF-LPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G D+L+ATPGR + L ++ ++ +L ILDE D + D F ++ +IS
Sbjct: 116 QMMRLRRGADILVATPGRLLDLYQQNAVRFDHLEVLILDEADRML-DMGFIHDIRKIISF 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT +I + + + ++ + P + + +++++ + K
Sbjct: 175 LPKKRQNLMFSATFSTDIRSLAKTLVNNPIEISVSPA-NSTATTVKQWIAPV----DKKK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
PE L QLI ++ +VF K+ L+ + H
Sbjct: 230 KPEL--------LSQLINTHQWTQVLVFSRTKHGANKLTRHLESVG-----LSAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F + LV TD A+RG+D + HVV FD P +YV R+G
Sbjct: 277 KSQGARTKALADFKAGDKQ----ILVATDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSL---AQRIMERN------RKGHPLHDVPSA 670
RT R AG TG+A V +V +R++ +N P HDVP++
Sbjct: 333 RTGR-AGATGEAISLVSADEVEHLWNIERLIGKNLPREVVEGFEPQHDVPAS 383
>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 42/387 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+++ S +LK NF+ P+++Q A P ++G+ I+ ++GSGKTLA+L+P+ +
Sbjct: 6 FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L GL ++L PT ELA QV RS+ K R++V+ GG + Q
Sbjct: 66 LN----SGLE--------AIVLVPTRELAQQVERVARSIGKAHGK-RTVVIYGGAPMERQ 112
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ G ++I TPGR M L++ G L L +R +LDE D + D F ++ ++ +
Sbjct: 113 IAGLK-GASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRML-DMGFIDDIKWILQKT 170
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT+P EI + + K+++ + + + +
Sbjct: 171 PKDKQMMLFSATMPPEIISLARRYMKNPEKIILSED-------------EITAENVAQYY 217
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
E +NK + L L+ S K ++FCN + + IL+++ K H +
Sbjct: 218 VEVGEINKIAKLSSLL-ISERGKYLIFCNTRRKTKNIAEILQKYGFK-----AFALHGDM 271
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q TR M F K+ ++ LV TD A+RGID G+ HVV +D P P +YV R+G
Sbjct: 272 RQATRTRTMDAF-----KQGKIDILVSTDVAARGIDVHGITHVVNYDVPLYPKDYVHRIG 326
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R GKA FV + +RI
Sbjct: 327 RTGR-MDAHGKAITFVTREDKEYFRRI 352
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 184/377 (48%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 146 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 257
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 258 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 314
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K SA++QL+ + + IVFCN + ++ L+R V
Sbjct: 315 EGD---------KHSAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 360
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D + V+ FD P + +YV
Sbjct: 361 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIVELPAVINFDLPFNAEDYV 416
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 417 HRIGRTGR-AGATGDAL 432
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 94 RLLPH------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 263 EGD---------KQAAVVQLLRGRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 308
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 309 IHGDKSQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 364
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 365 HRIGRTGR-AGATGDAL 380
>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
Length = 458
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 198/403 (49%), Gaps = 29/403 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ +FK+L S ++++L+ + ++ PS IQ A P V+ G+ + Q+G+GKT A+ L
Sbjct: 10 YHYMNFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFAL 69
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGG 383
P+IQ L + + SK R +IL PT +LA Q+ N + S+ V R V+ GG
Sbjct: 70 PIIQNLMKPSEKKYSKRVI---RSLILTPTRKLALQIAENFKEYGSRTSV--RCAVIFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+E L+ G+D+L+ATPGR L+ +G + L + +LDE D + D F ++
Sbjct: 125 VSANPQIEELRRGIDILVATPGRLNDLVGQGFVDLAYVEIFVLDEADRML-DMGFIHDVK 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+IS PV Q L +AT+P EI + D K++ P ++P + +
Sbjct: 184 KIISLLPVRKQTLLFSATMPAEI-----QALTD-KLLHNPARVEVTPVSSTVDIIDASLY 237
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
DK NK+S L+ L+ ++ T+VF +V L + R+
Sbjct: 238 YVDKE------NKRSLLVYLLNHEDITSTLVFTRTKHGADRVAKFLVK-----NRISAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F +S E ++ LV TD A+RGID + V+ FD P P Y+
Sbjct: 287 IHGDKSQGARQTALSHF---KSGEIQV-LVATDIAARGIDIEELSCVINFDLPNIPETYI 342
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
R+GRT R AG G+A F ++ + + I + K P+ D
Sbjct: 343 HRIGRTGR-AGLDGRAISFSDIEEKAYVKDIEKLTGKAIPVVD 384
>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 31/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL ++++L+++N+ P+ IQ A PP++ G+ + Q+G+GKT A+ +P +Q
Sbjct: 3 FKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ G ++ + R +++ PT ELA Q+ N + K +P + V+ GG QK Q
Sbjct: 63 LHKD---GAPRAGRRNIRALVITPTRELALQIYENFCAYGKY-LPLKCAVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
LQ+GVD+L+ATPGR L+++ ++ L N+ ILDE D + D F ++ +I+ +
Sbjct: 119 EAALQKGVDILVATPGRLNDLMQQKLIDLKNVELLILDEADRML-DMGFIHDVKKIIAKT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRI-SPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I + + KV + P + + G + VD
Sbjct: 178 PSQRQTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKG------- 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK+ L+ L++ + IVF T + +++ + + + + H
Sbjct: 231 -------NKRDLLIHLLKDPSIESAIVFTR---TKHGADRLVRHLTKAQVSAKAI--HGD 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +++F +++ R+ LV TD A+RGID + HV+ ++ P P YV R+G
Sbjct: 279 KSQGARQTALQDF---KNRTLRV-LVATDIAARGIDIDELSHVINYELPNIPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIF 642
RT R AG +G A F
Sbjct: 335 RTGR-AGQSGVAISF 348
>gi|380027510|ref|XP_003697466.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 623
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 183/375 (48%), Gaps = 28/375 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ + RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 113 FEEGGFPDYVLNEIHRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 172
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQK 387
+ + + + P +ILAPT ELA Q+ + S G+ R+ + GG +
Sbjct: 173 INHQP----RLNRNDGPIALILAPTRELAQQIQ---QVASDFGISSQVRNTCIFGGAPKG 225
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 226 PQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVE 284
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 285 QIRPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDV 336
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 337 CEEYEKEGKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGD 391
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+G
Sbjct: 392 KSQQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIG 447
Query: 628 RTARGAGGTGKAFIF 642
RT R + TG A+ F
Sbjct: 448 RTGR-SQRTGTAYAF 461
>gi|395490699|ref|ZP_10422278.1| DEAD/DEAH box helicase [Sphingomonas sp. PAMC 26617]
Length = 485
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 198/413 (47%), Gaps = 40/413 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++ SF LG ++ ++ +L+ + + P+ IQA + P ++EG+ + Q+G+GKT A++L
Sbjct: 3 YTFMSFAHLGLAEPLVRALEAKGYTSPTPIQAQSIPMLLEGRDLLGIAQTGTGKTAAFVL 62
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--- 381
P IQRL + + L R+++LAPT ELASQ+ + R +K F M V
Sbjct: 63 PSIQRLVAADKRVLPTHC----RMLVLAPTRELASQIADSARDYAK----FSKMTVATVF 114
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG +++ GVD+L+ATPGR + LI++ ++ L L +LDE D + D F A
Sbjct: 115 GGTSINKNRQDMSRGVDILVATPGRLLDLIEQRMVSLAMLEILVLDEADQML-DLGFIHA 173
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
L+ ++ P Q LF +AT+P I + D V + + +E+++
Sbjct: 174 LRKIVKMLPRVRQTLFFSATMPNAIRELADQFLNDPATVKVAPVSSTAERVEQYVY---- 229
Query: 502 DQESDKTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
F+N K++ L L+ + + +VF +V +L
Sbjct: 230 -----------FVNQGEKQALLTMLLADGAIERCLVFTRTKHGADRVVKLL-----GANG 273
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
+ H Q R + EF T + K LV TD A+RGID +GV HV F+ P
Sbjct: 274 IPANAIHGNKSQPQRERALGEFKTGKVK----VLVATDIAARGIDVSGVSHVFNFELPNV 329
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
+YV R+GRTAR AG +G A F + S + I + R + +P F
Sbjct: 330 AEQYVHRIGRTAR-AGASGIAISFCADDERSYLRDIEKLTRVKPDMVKLPEGF 381
>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
mellifera]
Length = 616
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 183/375 (48%), Gaps = 28/375 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ + RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 112 FEEGGFPDYVLNEIHRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 171
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQK 387
+ + + + P +ILAPT ELA Q+ + S G+ R+ + GG +
Sbjct: 172 INHQP----RLNRNDGPIALILAPTRELAQQIQ---QVASDFGISSQVRNTCIFGGAPKG 224
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 225 PQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVE 283
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 284 QIRPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDV 335
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 336 CEEYEKEGKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGD 390
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+G
Sbjct: 391 KSQQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIG 446
Query: 628 RTARGAGGTGKAFIF 642
RT R + TG A+ F
Sbjct: 447 RTGR-SQRTGTAYAF 460
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|325090197|gb|EGC43507.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H88]
Length = 539
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 195/409 (47%), Gaps = 56/409 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SL RP+ IQ P +++G+ CI ++GSGKT+A+ P++Q
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 169
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 170 KWAEDPFGIFA---------VILTPTRELALQIFEQIKAIS-APQSLKPILITGGTEMRP 219
Query: 389 QLENLQEGVDVLIATPGRFMFLI----KEGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR I + I L R + DE D L D
Sbjct: 220 QAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDV 279
Query: 439 EVALQSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497
E L +L P TA Q L TAT V P+ + + M R + L F+
Sbjct: 280 ETCLSTL---PPSTARQTLLFTAT-----------VTPEVRALK--SMPRPANKLPIFVT 323
Query: 498 DCSGDQESDKTP-------ETAFLNKKSALLQLIEKSPVSK--TIVFCNKIVTCRKVENI 548
+ S + ++ P + ++++ L LI + S+ I+FCN+ T VE +
Sbjct: 324 EVSTENKASIPPTLKQTYLQVPLTHREAFLHTLISTAANSQKPAIIFCNRTKTADLVERM 383
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
L+R RV H+ L Q R AN+ F R+ AR+ LV TD A+RG+D V
Sbjct: 384 LRRLGH-----RVTSLHSLLPQSERTANLSRF---RASAARI-LVATDVAARGLDIPSVS 434
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
V+ FD PR+P +YV RVGRTAR AG G+A V + V L I +R
Sbjct: 435 LVINFDVPRNPDDYVHRVGRTAR-AGREGEAVTLVGQRDVQLVLAIEDR 482
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQAIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|418300341|ref|ZP_12912167.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533754|gb|EHH03074.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 490
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 189/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++ R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTC----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLSHNYLTDPVKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P + IVF T E + K + +V H
Sbjct: 233 KTD----LLKKS-----LNENPDGRAIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 278
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 279 NKSQGQRERALKGFKDGEIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 334
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 335 GRTAR-AGRDGIAIAFCAPDETRLLHDI 361
>gi|393768781|ref|ZP_10357313.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
gi|392725793|gb|EIZ83126.1| DEAD/DEAH box helicase [Methylobacterium sp. GXF4]
Length = 575
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 194/409 (47%), Gaps = 32/409 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S F + G + ++ +L ++ P+ IQA A PP +EG+ Q+G+GKT A+ L
Sbjct: 63 ISLTQFTDFGLAQPVLRALGEAGYVTPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFAL 122
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ RL + + + RV++L+PT ELA+Q+ + + + + + VV GG
Sbjct: 123 PILHRLSLSDRRAPRRGC----RVLVLSPTRELANQIAESFADYGRH-LSYTTTVVFGGV 177
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L GVD+L+ATPGR + LI+ L L + +LDE D + D F AL+
Sbjct: 178 TISRQERALAPGVDILVATPGRLIDLIERRSLTLEGVEILVLDEADQML-DLGFIHALKR 236
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P Q LF +AT+P I + D +V + P V + ++
Sbjct: 237 IVKMLPAQRQSLFFSATMPKNIAGLASQYLKDPVQVAVTP-------------VATTAER 283
Query: 504 ESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K A K ALL I + P + + +VF T + +++ D+ +
Sbjct: 284 VEQKV-IFAHTGAKQALLAHILRDPAIDRVLVFTR---TKHGADRVVRGLDK--VGIAGA 337
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R ++ F R + R+ LV TD A+RGID GV HVV FD P P Y
Sbjct: 338 AIHGNKSQPQRERALQAF---RDGDCRV-LVATDIAARGIDVDGVSHVVNFDLPNVPESY 393
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
V R+GRTAR AG TG A F ++ + + I R+ P+ P F
Sbjct: 394 VHRIGRTAR-AGATGLAISFCNDEERAYLRDIERLTRQSVPVAGFPEGF 441
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPH------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 241 EGD---------KQAAVVQLLRGRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 36/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +IE+L F P+ IQ A P V++G+ + Q+G+GKT A+ LP+
Sbjct: 3 FSDLNLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPM--- 59
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LQGL + + + +I+APT ELA QV SLSK G+ + V GG+ Q
Sbjct: 60 -----LQGLD-TDHRALQALIIAPTRELAIQVHDELYSLSK-GLKTKVYAVYGGYSIGKQ 112
Query: 390 LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
++ +Q+ V++ TPGR + L++ I+ L+ I+DE D + N F +++++
Sbjct: 113 IDRIQKLKPQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLN-MGFIEDIKAIVEQ 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +AT+P + N + V H + ++++ V C ++ D
Sbjct: 172 TPSSRQTLMFSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVKCRDSEKFD-- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L ++++ K I+F T ++V+ I + + ++ H +
Sbjct: 230 ----------ILTRMLDIESPDKAIIFAR---TKKRVDEIGRGLSLRGYDAELI--HGDV 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R M EF K+ RL LV TD A+RGID +GV HV +D P+DP YV R+G
Sbjct: 275 TQQKRTQVMNEF-----KQGRLELLVATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIG 329
Query: 628 RTARGAGGTGKAFIFVV 644
RT R AG G++ FV+
Sbjct: 330 RTGR-AGNEGQSVTFVM 345
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 35 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 94
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 95 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 147
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 148 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 206
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 207 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 263
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A++QL+ + + IVFCN + ++ L+R V
Sbjct: 264 EGD---------KQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 309
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P +YV
Sbjct: 310 IHGDKTQIERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFSAEDYV 365
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 366 HRIGRTGR-AGATGDAL 381
>gi|226943135|ref|YP_002798208.1| DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
DJ]
Length = 434
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 198/411 (48%), Gaps = 41/411 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG ++ +L ++ P+ +Q A P ++ G+ ++A Q+GSGKT + LPV+Q
Sbjct: 2 TFAYLGLIKPLLRTLPVLGYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
RL L+G S + + S R ++L PT ELA QV R+ CG +P R+ V GG
Sbjct: 62 RL---TLEG-SPAAANSVRALVLVPTRELAEQVHGTIRA---CGMELPLRTAVAYGGVSI 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ G+DVL+ATPGR + L ++ ++ L+ +LDE D + D F L+ L
Sbjct: 115 NPQMMLLRPGIDVLVATPGRLLDLYRQNAVRFDQLQILVLDEADRML-DLGFSRELEELF 173
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI + D + + +P + ++++ D
Sbjct: 174 VLLPAQRQTLLCSATFSEEIRQIATGLLRDPLTIEISAPNSAAPSVAQWMIPV------D 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K K L L+E+ + +VF T + VE + + ++ R + H
Sbjct: 228 KK------RKAELFLHLLERERWEQVLVFSR---TRKGVERLAEELQQRGYRAGAI--HG 276
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q RL +++F + LV TD A+RG+D G+ VV D P P YV R+
Sbjct: 277 DLPQPARLRALEQFKADELQ----VLVATDVAARGLDIQGLPLVVNLDLPVAPEYYVHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGKQV-------SLAQRIMERNRKG--HPLHDVP 668
GRT R AG +G+A V +V +L ++++ R + P H VP
Sbjct: 333 GRTGR-AGASGEAISLVCADEVEQLAAIEALIRQLLPRREEPDFSPEHRVP 382
>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase [Desulfotomaculum reducens MI-1]
gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
Length = 532
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/380 (32%), Positives = 189/380 (49%), Gaps = 41/380 (10%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F L +++ LK F P+ IQ +A P V+ G I Q+G+GKT A+ +P+I
Sbjct: 8 KLFGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMI 67
Query: 328 QRL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGG 383
+RL R+ E+Q +I+ PT ELA QV +SK G R V + GG
Sbjct: 68 ERLNPRKREVQ-----------TIIITPTRELAIQV---AEEISKIGRFSRIKVLPIYGG 113
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q+ +L+ GV V++ TPGR + ++ L++ + ILDE D + D F ++
Sbjct: 114 QSIERQIRSLRLGVQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEML-DMGFIEDIE 172
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+I +P Q L +AT+P EI + D K V + P +E+ +
Sbjct: 173 EIIRHTPAERQTLLFSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYEA---- 228
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
PE NK AL ++++ S +S+ I+FC T R V+ ++ + L
Sbjct: 229 -----PEK---NKLEALCRILDISDISQGILFCR---TKRGVDELVAGLQARGFAAAAL- 276
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q+ R M++F RS E L LV TD A+RG+D GV HV+ +D P+DP YV
Sbjct: 277 -HGDLSQQQRNTVMRQF---RSSEVEL-LVATDVAARGLDIEGVSHVINYDIPQDPEFYV 331
Query: 624 RRVGRTARGAGGTGKAFIFV 643
R+GRT R AG +G A +
Sbjct: 332 HRIGRTGR-AGRSGVAITII 350
>gi|330844673|ref|XP_003294242.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
gi|325075337|gb|EGC29238.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
Length = 599
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 203/403 (50%), Gaps = 46/403 (11%)
Query: 269 SFKELGCSDYMIE------------SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
S KELG SD IE S++ F + + IQA + P++EGK + A ++GS
Sbjct: 108 SEKELGISDNAIEFANLPIHDNTKKSIEEMTFKKMTPIQAKSILPLLEGKDLLGAARTGS 167
Query: 317 GKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
GKTLA+L+P I+ L + + ++ +G V+I++PT ELA Q+ + L K
Sbjct: 168 GKTLAFLIPAIEILVKSGFK--PRNGTG---VIIISPTRELALQIYGVAKELLKYHTQTH 222
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFN 434
+++ GG +K + E L++GV++L+ATPGR + ++ +G + NL+C ++DE D +
Sbjct: 223 GIII-GGAAKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITK-NLKCLVIDEADRIL- 279
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR-ISP--G 491
+ FE + ++ P Q + +AT ++ + + V +G R IS G
Sbjct: 280 EVGFEEEMHKIVKLLPKNRQTMLFSATQTRKVEDIAKVSLNNSPVYVGVDDEREISTVEG 339
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551
LE+ V C E FL L ++++ K IVF + + +L
Sbjct: 340 LEQGYVVCPS--------ERRFL----LLYTFLKRNLNKKVIVFLSSCNAVKYTAELLNY 387
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611
D + VL H Q+ R EF + + L+CTD A+RG+D VD ++
Sbjct: 388 ID-----IPVLELHGRQKQQKRTNTFYEFVNAE----KGILICTDVAARGLDIPSVDWII 438
Query: 612 LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+D P DP EY+ RVGRTARG G G+A +F++ K++ + +
Sbjct: 439 QYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFLKYL 481
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|444910739|ref|ZP_21230918.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
gi|444718836|gb|ELW59644.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
Length = 550
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 191/407 (46%), Gaps = 49/407 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++R F P+ IQA A PP + G+ I +G+GKT AYLLP+++
Sbjct: 4 SFKTLGLSDESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAATGTGKTAAYLLPLVE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC------RSLSKCGVPFRSMVVTG 382
RL + + P V+LAPT EL Q+ R L++ VV G
Sbjct: 64 RL----------AGAPGPAGVVLAPTRELVQQIADEATFFGQPRGLAQA-------VVIG 106
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+E L++ +++ATPGR L++ G++ L +R +LDE D + + F L
Sbjct: 107 GTDATAQVEALRQNPSLVLATPGRLADLLQAGVVNLSTVRMLVLDEADRML-EMGFMPEL 165
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSG 501
+ ++++ P Q L +ATL + EV +V + P + ++ L D
Sbjct: 166 EKILAALPRERQTLLFSATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQR-LYDVKS 224
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
++ K LL L+ + +S IVF KV+ LK K +
Sbjct: 225 EE------------KYPLLLTLLARDQLS-AIVFTRTRERAEKVQGYLKEAGHKAALI-- 269
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H+ Q R ++ F + + LV TD ASRG+D + HV+ FD P P +
Sbjct: 270 ---HSDRTQGQRRQALEGFRKGQYR----CLVATDIASRGLDVEDIGHVINFDLPHSPED 322
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
YV R+GRTAR AG +G+A FV + I R P +VP
Sbjct: 323 YVHRIGRTAR-AGASGRASTFVTERDAETMIAIERITRMSLPRTEVP 368
>gi|386391490|ref|ZP_10076271.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
gi|385732368|gb|EIG52566.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
Length = 493
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 189/404 (46%), Gaps = 32/404 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF + E++KR + P+ IQA A P V EG+ + Q+G+GKT A+LLP+I
Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +KS R +ILAPT ELA Q+ L + G R+ V+ GG
Sbjct: 62 RLM------TTKSEKRGVRALILAPTRELAEQIYRAGLDLGR-GTRLRAAVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+++A PGR + + +G ++ L +LDE D +F D F ++ ++S+
Sbjct: 115 QTRALRQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMF-DMGFLPDIKRILSA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I E D V M +S +E + S Q
Sbjct: 174 LPSERQTLLFSATMPPAISGLAHETLTDPITVRIGHMAPLST-VEHAIYPISHTQ----- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K LL L+E++ IVF T + +N+ ++ R + L L
Sbjct: 228 -------KAPLLLHLLEEAGKQSVIVFTR---TKHRAKNLAQQLCRSGHKATCL--QGNL 275
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R M F + + LV TD A+RGID + V HVV FD P Y R+GR
Sbjct: 276 SQRQRQIAMDGF----RRGSFQVLVATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGR 331
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
T R A G+A FV G+ + + + I +K P +V FE
Sbjct: 332 TGR-AEHEGQAHTFVTGEDMGMVRAIESHMKKPLPRREV-EGFE 373
>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 42/387 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+++ S +LK NF+ P+++Q A P ++G+ I+ ++GSGKTLA+L+P+ +
Sbjct: 6 FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L GL ++L PT ELA QV RS+ K R++V+ GG + Q
Sbjct: 66 LN----SGLE--------AIVLVPTRELAQQVERVARSIGKAHGK-RTVVIYGGAPMERQ 112
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ G ++I TPGR M L++ G L L +R +LDE D + D F ++ ++ +
Sbjct: 113 IAGLK-GASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRML-DMGFIDDIKWILQKT 170
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT+P EI + + K+++ + + + +
Sbjct: 171 PKDKQMMLFSATMPPEIISLARRYMKNPEKIILSED-------------EITAENVAQYY 217
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
E +NK + L L+ S K ++FCN + + IL+++ K H +
Sbjct: 218 VEVGEINKIAKLSSLL-ISERGKYLIFCNTRRKTKNIAEILQKYGFK-----AFALHGDM 271
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q TR M F K+ ++ LV TD A+RGID G+ HVV +D P P +YV R+G
Sbjct: 272 RQATRTRTMDAF-----KQGKIDILVSTDVAARGIDVHGITHVVNYDVPLYPKDYVHRIG 326
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R GKA FV + +RI
Sbjct: 327 RTGR-MDAHGKAITFVTREDKEYFRRI 352
>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 525
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 202/412 (49%), Gaps = 48/412 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++++ F +PSQIQ + P + G I Q+G+GKT AY LP+I +
Sbjct: 6 FATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITK 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ S + + +ILAPT ELA QV + LSK ++ V GG Q
Sbjct: 66 M----------SDNRGIKSLILAPTRELAVQVNEEIQRLSKYE-KIVTLAVYGGDSIDRQ 114
Query: 390 LENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
+ L++G VD+++ TPGR + L+K L L ++ +LDE D + N F +Q ++S
Sbjct: 115 IRALRKGDVDIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLN-MGFIDDIQEILSH 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+P Q L +AT+P I KL + + PD K+V + R S +
Sbjct: 174 TPSERQTLLFSATMPDPIA-KLAKKYMKPDAKLV---SIKRSSLTVS------------- 216
Query: 507 KTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K ++ F+ ++ AL +L++ S I+FC T R V+ +++ K V
Sbjct: 217 KIEQSYFMINNKHRLEALCRLLDLDNPSSAIIFCR---TKRGVDELVQELQSKGYMVE-- 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H + Q RL + +F KE L L+ TD A+RGID GV HV +D P+D
Sbjct: 272 GMHGDMTQAHRLTTLNKF-----KEGTLNLLIATDVAARGIDVEGVTHVFNYDLPQDVES 326
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
YV R+GRT R A +G A+ V K S+ ++I + VP+A E+
Sbjct: 327 YVHRIGRTGR-ANKSGTAYSLVTPKDFSMLKQIQNVTKSSITQKPVPTAEEI 377
>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 492
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 204/407 (50%), Gaps = 36/407 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG + ++++L + + P+ IQ A P V++ + + Q+G+GKT A+ +P++Q
Sbjct: 28 SFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ 87
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q++ Q + + + +IL PT ELA Q+ + + K + +S+V+ GG Q
Sbjct: 88 LMHQDQ-QAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKF-LDLKSLVIFGGVSQHP 145
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L++GVD+LIATPGR + LI + + L +++ +LDE D + D F +Q +I
Sbjct: 146 QTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRML-DMGFVHDVQRVIVK 204
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI + + P ++P S E+ T
Sbjct: 205 LPEQRQSLFFSATMPPEI-----QTLAKAILRNNPAKVEVTP--------VSSTAET-IT 250
Query: 509 PETAFLN---KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
F+N K++ LL +++ + +VF T + ++K + E + H
Sbjct: 251 QSMYFVNKNDKRNLLLHILKDKAIKTLLVFTR---TKHGADRVVKDLHKAEITAEAI--H 305
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F +S++ R+ LV TD A+RGID + HVV ++ P P YV R
Sbjct: 306 GNKSQNARQRALNNF---KSQQTRV-LVATDIAARGIDIDELTHVVNYELPNVPETYVHR 361
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK------GHPLHD 666
+GRT R AG G A F ++ + + I++ + HP H+
Sbjct: 362 IGRTGR-AGADGIAISFCEPEEKAFLKDILKLISREIPVETEHPFHN 407
>gi|240278937|gb|EER42443.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H143]
Length = 539
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 195/409 (47%), Gaps = 56/409 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SL RP+ IQ P +++G+ CI ++GSGKT+A+ P++Q
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 169
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 170 KWAEDPFGIFA---------VILTPTRELALQIFEQIKAIS-APQSLKPILITGGTEMRP 219
Query: 389 QLENLQEGVDVLIATPGRFMFLI----KEGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR I + I L R + DE D L D
Sbjct: 220 QAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDV 279
Query: 439 EVALQSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497
E L +L P TA Q L TAT V P+ + + M R + L F+
Sbjct: 280 ETCLSAL---PPSTARQTLLFTAT-----------VTPEVRALK--SMPRPANKLPIFVT 323
Query: 498 DCSGDQESDKTP-------ETAFLNKKSALLQLIEKSPVSK--TIVFCNKIVTCRKVENI 548
+ S + ++ P + ++++ L LI + S+ I+FCN+ T VE +
Sbjct: 324 EVSTENKASIPPTLKQTYLQVPLTHREAFLHTLISTAANSQKPAIIFCNRTKTADLVERM 383
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
L+R RV H+ L Q R AN+ F R+ AR+ LV TD A+RG+D V
Sbjct: 384 LRRLGH-----RVTSLHSLLPQSERTANLSRF---RASAARI-LVATDVAARGLDIPSVS 434
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
V+ FD PR+P +YV RVGRTAR AG G+A V + V L I +R
Sbjct: 435 LVINFDVPRNPDDYVHRVGRTAR-AGREGEAVTLVGQRDVQLVLAIEDR 482
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|452751054|ref|ZP_21950800.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
gi|451961204|gb|EMD83614.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
Length = 481
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 188/387 (48%), Gaps = 32/387 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++ ++ + P+ IQ A P V+ GK + Q+G+GKT +++LP+I
Sbjct: 14 SFHQLGLSDELLGAVADSGYSDPTDIQRQAIPLVLMGKDVVGVAQTGTGKTASFVLPMID 73
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q +S + PR +I+APT ELA QV N K ++++ GG
Sbjct: 74 ILSQ------GRSRARMPRSLIIAPTRELADQVAQNFEKYGKNSKLSMALLI-GGVSFGD 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVLIATPGR + + G + L + ++DE D + D F ++ +
Sbjct: 127 QDKALAKGVDVLIATPGRLLDQFERGKILLSGVDILVIDEADRML-DMGFIPDVERICGL 185
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT+P I KL + F SP E S ++ +++
Sbjct: 186 LGRNRQTLLFSATMPPPI-KKLADKFMS------------SPKQIEVERQSSTNKNIEQS 232
Query: 509 PE-TAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K+ AL +++ + IVFCN+ + + ++L K+ R H
Sbjct: 233 VQHVGPRGKRGALRKILGSEGMRSAIVFCNRKRDVKTLTDVL-----KDAGFRAGQIHGD 287
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+DQ+ R+A M +F +A LV +D A+RG+D GV HVV +D P +YV R+G
Sbjct: 288 MDQKDRMATMADFKA----DAINVLVASDVAARGLDVKGVSHVVNYDVPLHAEDYVHRIG 343
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG TG A V L + I
Sbjct: 344 RTGR-AGATGVAVTLVTDSDTELLENI 369
>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
Length = 559
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 189/394 (47%), Gaps = 45/394 (11%)
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
G + K+F LG + +E+LK Q P+ +Q + P ++EG+ I +G+GKTLA
Sbjct: 6 GSEYHLKNFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLA 65
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
+LLP++Q+L ++ P+ +++APT ELA Q+ L+ + V
Sbjct: 66 FLLPILQKLNLDKRH---------PQALVIAPTRELALQITEEANRLAATEPSLSLLAVY 116
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG + QL L+ G ++I TPGR + ++ G L L ++ +LDE D + + F
Sbjct: 117 GGQDVERQLRKLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLH-MGFLND 175
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF----PDCKVVMGPGMHRISPGLEEFLV 497
+++++ P Q + +AT+P I KL V+ D KV + +S + + +V
Sbjct: 176 VETILQEVPYRRQTMLFSATMPAGI-RKLARVYMNEPVDVKVKSASSVP-VSQ-IRQVVV 232
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRK 555
Q +D+ K+ AL+ ++ ++FC K+ L+ F+
Sbjct: 233 -----QTTDR-------GKQQALVDMLNTDRPYLAVIFCRTKRRAAKLNEELQEMGFESG 280
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFD 614
E H L Q R MK F +EA+L LV TD A+RG+D GV HV +D
Sbjct: 281 E-------LHGDLSQNKREQVMKAF-----REAKLQLLVATDVAARGLDVEGVTHVFNYD 328
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648
P+D Y+ R+GRT R AGG G A + V
Sbjct: 329 MPQDAESYIHRIGRTGR-AGGKGVAVTLATPRDV 361
>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase [Halorhodospira halophila SL1]
gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
SL1]
Length = 403
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 196/394 (49%), Gaps = 35/394 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ +G S ++ ++ +Q + +P+ IQA A P V+ G + + Q+G+GKT A+ LP++Q
Sbjct: 2 TFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + R ++L PT ELA+QV + + + +P RS + GG
Sbjct: 62 RLSDTAPQQGQRRI----RALVLTPTRELAAQVSESVATYGRH-LPLRSTEIYGGAPMGK 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GVD+++ATPGR + + G + L ++ ILDE D + D F+ A++ ++ S
Sbjct: 117 QTAALRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDEADRML-DMGFKPAIERILKS 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE--FLVDCSGDQESD 506
P Q L +AT + + V+ + + +E+ + VD
Sbjct: 176 VPNQRQTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAAEAVEQGAYFVDAG------ 229
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K+ L QLI + +VF T R + + ++ +R+ +R H
Sbjct: 230 --------RKRELLTQLINDGDWRQVLVFTR---TKRGADRLAEQLEREG--IRSQSIHG 276
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F + K R LV TD A+RG+D AG+ HVV +D P +P +Y+ R+
Sbjct: 277 DKSQGQRGRALAAF---KRKSVRA-LVATDVAARGLDIAGLPHVVNYDLPNNPEDYIHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGK---QVSLAQRIMER 657
GRT RG G +G+A+ V G+ Q QR+++R
Sbjct: 333 GRTGRG-GDSGEAWSLVGGEERGQFKAIQRLVKR 365
>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase [Sphingopyxis alaskensis RB2256]
gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 459
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/376 (30%), Positives = 183/376 (48%), Gaps = 28/376 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF + G + +L +++ +P+ IQ A PP+++G+ Q+G+GKT + LP I
Sbjct: 3 SFNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPSIH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L + T R+++LAPT ELA+Q+ +CR + V GG
Sbjct: 63 HL----LTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRF-TKLSVSTVFGGVPINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GVD+L+ATPGR + LI + L+L ++ +LDE D + D F +L+ +
Sbjct: 118 QIRDLSQGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMM-DMGFIHSLRRVAKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI + D V + + +F +
Sbjct: 177 LPSRRQNLFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAEKVRQFATFVEQKE----- 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K++ L +I+ S + + ++F T + +++ K + H
Sbjct: 232 -------KQALLHHVIKTSDIDRALIFTR---TKHGADRVVRHL--KGAGIEAFAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R A ++ F RS + RL LV TD A+RGID +GV HV+ F+ P P +YV R+GR
Sbjct: 280 SQAQRTAALQAF---RSGQVRL-LVATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVV 644
TAR AG G A F+
Sbjct: 336 TAR-AGAEGIAISFIA 350
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/409 (29%), Positives = 208/409 (50%), Gaps = 40/409 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S +++++ +++PS IQA A P V+ GK I Q+G+GKT A++LP+++
Sbjct: 5 TFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILE 64
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ + + +Q L +L PT ELA QV + S+ + + GG
Sbjct: 65 KIDPKNKNVQAL-----------VLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSY 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++GV +++ TPGR M ++ G L+L NL+ +LDE D + N F+ ++ ++
Sbjct: 114 DPQIRALKKGVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLN-MGFKDDIEEIL 172
Query: 447 SSSPVTAQYLFVTATLPVEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+P + Q + +AT+ EI N K + P+ V+ + + ++++ V+ +
Sbjct: 173 EKTPESRQTVMFSATMAREIMNIAKTYQKNPEVVKVVSEELS--NKKIDQYYVEV---KR 227
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
D+ A+++ I+ ++ +IVF N T R+V+ ++ + +E
Sbjct: 228 QDRV---------QAMIRCIDMMGLTSSIVFTN---TKREVDELVSKL--QEEGYVTEGL 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H L Q R M F R K + LV TD A+RGID + V+ V +D P + YV
Sbjct: 274 HGDLKQAQRDRVMNSF---RRKNVNI-LVATDIAARGIDVSNVEAVFNYDIPLNEENYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R AG TG + FV GK + +RI + + +PS E+
Sbjct: 330 RIGRTGR-AGMTGLSITFVFGKDMFRIRRIEDYTKTKMSKMPIPSVEEI 377
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 193/388 (49%), Gaps = 33/388 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ ++ + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 24 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 83
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 84 LLTRG-----NRAQAKQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVVFGGVGIGP 137
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L + L L ILDE D + D F ++ ++
Sbjct: 138 QISKLGKGVDILVATPGRLLDLFNQRALNFNQLEVLILDEADRML-DMGFIHDIKKILKV 196
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT +I KL + V ++ + P + + +E+++ Q
Sbjct: 197 LPAKRQNLMFSATFSDDI-RKLAKGLVNNPVEISVTP-RNATAKTVEQYIYQVDQKQ--- 251
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K +AL+ LI+++ + +VF ++ L+ D + H
Sbjct: 252 ---------KTAALIHLIKQNDWKQVLVFSRTKHGANRIAKNLEAND-----LTAAAIHG 297
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F +S E R+ LV TD A+RGID + +VV FD P P +YV R+
Sbjct: 298 NKSQGARTKALANF---KSGEVRV-LVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRI 353
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG G+A V G + L + I
Sbjct: 354 GRTGR-AGADGQAVSLVSGDESKLLRDI 380
>gi|383852806|ref|XP_003701916.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Megachile
rotundata]
Length = 615
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 184/375 (49%), Gaps = 28/375 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G +Y++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 115 FEEGGFPEYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 174
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQK 387
+ Q+ + P +ILAPT ELA Q+ + S GV R+ + GG +
Sbjct: 175 INQQP----RLNRGDGPIALILAPTRELAQQIQ---QVASDFGVSSQVRNTCIFGGAPKG 227
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 228 PQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVE 286
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 287 QIRPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDV 338
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 339 CEEFEKEGKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGD 393
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+G
Sbjct: 394 KSQQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIG 449
Query: 628 RTARGAGGTGKAFIF 642
RT R + TG A+ F
Sbjct: 450 RTGR-SQRTGTAYAF 463
>gi|429770137|ref|ZP_19302216.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429185399|gb|EKY26379.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 491
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 30/395 (7%)
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
+G + ++ +L + +P+ IQA + P V++GK + Q+G+GKT A+ LP++ RL +
Sbjct: 1 MGLNKALLTALASTGYEKPTPIQAKSIPDVMKGKDLLGIAQTGTGKTAAFALPILHRLAE 60
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
+ ++T R +IL+PT ELA+Q+ + + + FR VV GG + Q
Sbjct: 61 NRVAPKPRTT----RALILSPTRELATQIADSFKQYG-AHLGFRVAVVFGGVKYGPQERA 115
Query: 393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
LQ+G+DVL+A PGR + I++ L L + +LDE D + D F ++ ++S P
Sbjct: 116 LQQGLDVLVAAPGRLLDHIQQKTLDLSSTEIFVLDEADQML-DLGFIKPIRQIVSRIPAK 174
Query: 453 AQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
Q LF +AT+P EI E+ D KV + P + + + G
Sbjct: 175 RQNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQG---------- 224
Query: 512 AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQE 571
K++ L +L ++ +VF KV L+ V H Q
Sbjct: 225 ---KKRALLTELFSAPAYTRCLVFTKTKHGADKVAAYLE-----AGGVEAGAIHGNKSQP 276
Query: 572 TRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR 631
R ++ F + + LV TD A+RGID V HVV F+ P P YV R+GRTAR
Sbjct: 277 QRERALEAFKNGKLR----VLVATDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTAR 332
Query: 632 GAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
AG G A FV G ++ L + I + R+ P D
Sbjct: 333 -AGKDGTAISFVAGDEMKLLKDIEKVTRQKIPAID 366
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/375 (32%), Positives = 189/375 (50%), Gaps = 38/375 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ + P+QIQA A P +++ + + Q+G+GKT ++ LP+++
Sbjct: 35 FSDLGLCAPIMRAIDEIGYKTPTQIQAQAIPVILQKQDLVGIAQTGTGKTASFTLPILEI 94
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +K + PR +IL PT ELA QV N + + + ++ GG Q
Sbjct: 95 LTS------TKGRARMPRALILEPTRELAIQVADNLKQYGQY-LKLSHALLMGGESIVEQ 147
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVD++IATPGR M L +G + L ++ ++DE D + D F ++ +IS
Sbjct: 148 KDILNRGVDIIIATPGRLMDLFDKGAILLNQIKILVIDEADRML-DMGFIPDVERIISFL 206
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q L ++AT+ EI KL + F P V P ++ +E L+
Sbjct: 207 PKTRQTLLLSATMSPEI-KKLTDSFLSNPTEITVAPPS--SVATTIESGLIIV------- 256
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR-FDRKETRVRVLPFH 565
PE K++ L QL+ V I+FCN+ +K +IL R +R + L H
Sbjct: 257 --PEK---RKRATLRQLLRNEGVKNAIIFCNR----KKDVDILTRSLNRHGFQSSAL--H 305
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q+ R M+EF + FLVC+D A+RGID + HV FD PR +YV R
Sbjct: 306 GDLTQQHRTKTMEEFKNGEIQ----FLVCSDIAARGIDVDHLSHVFNFDLPRQAEDYVHR 361
Query: 626 VGRTARGAGGTGKAF 640
+GRT R AG TG A+
Sbjct: 362 IGRTGR-AGRTGFAY 375
>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
Length = 618
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 189/376 (50%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SFK++G D ++++++ + F P+ IQ +A P ++ G++ I+A ++G+GKT A+ LP+I
Sbjct: 4 SFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPLI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR + G PR ++L PT ELA QV + S P R VV GG
Sbjct: 64 QELR---------ADLGHPRALVLVPTRELAMQVAAEIESFRIETYP-RIAVVYGGSSMS 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L++G ++++ TPGR + I+ G L L + ILDE D + N F ++++ S
Sbjct: 114 EQLRALKKGAEIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLN-MGFISDIETIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P I + + D ++V E+F +E DK
Sbjct: 173 KANSNARILMFSATMPKPILSIASDFMGDYEIVAEELSEEPVSLTEQFYWFV---REEDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
AL++LI+ +P +VFC T +++ K + + L H
Sbjct: 230 I---------EALIRLIDITPDFYGLVFCQ---TKLDADSVAKELEERGYEAAAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R + F RSK+ R LV TD A+RGID G+ HVV + P D Y R+G
Sbjct: 276 IPQNQREKILSRF---RSKKIRT-LVATDVAARGIDIEGITHVVNYAIPYDGPTYTHRIG 331
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG TG A F+
Sbjct: 332 RTGR-AGSTGTAVSFI 346
>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 465
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 191/390 (48%), Gaps = 40/390 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFAELGLSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 RLEQ------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + GVDVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKITRGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV---VMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L + F V V P + +E+ LV G+
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-QRLADDFLHNPVRIEVARPA--STASTIEQRLVATGGEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKT-IVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L +LI + K I+FCN+ R V + K V L
Sbjct: 229 H----------QKRKTLRRLIRGAEELKNGIIFCNR---KRDVAQLQKSLANHGFTVAAL 275
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F RS E L LV +D A+RG+D V HV FD P +Y
Sbjct: 276 --HGDMDQRARMAALDAF---RSGEIPL-LVASDVAARGLDIPAVSHVFNFDVPHHAEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFVV-GKQVSLA 651
V R+GRT R AG G AF V G + +LA
Sbjct: 330 VHRIGRTGR-AGRNGSAFTLVARGDEKALA 358
>gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 432
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 189/382 (49%), Gaps = 34/382 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S ++ +L+ F +P+ IQ AFP + GK I Q+G+GKTLAYL+P++
Sbjct: 2 TFNELNISKQILMALEDAGFEQPTPIQERAFPVIRSGKDVIGIAQTGTGKTLAYLIPLLM 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + PR +++ PT EL QV + L++ + R + + GG +T
Sbjct: 62 KLHY--------AQGNYPRALVIVPTRELVVQVCESVELLTEY-MDIRCVGIYGGTNIRT 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + EGVD+L+ TPGRFM + GI++ ++ ++DE D L D F L+S++
Sbjct: 113 QQAAVYEGVDLLVTTPGRFMDIYMNGIIRTPQIKTVVVDEADRLM-DMGFMPQLRSILEV 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT I E + P RI G V+ D
Sbjct: 172 VPEKHQTLLFSATFSTTIAELAAE-------FLAPEPVRIETGNPTTPVELVTQLRYD-L 223
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRF-DRKETRVRVLPFH 565
P + K LL+L+ +K + ++F T + + I++R D + + VL H
Sbjct: 224 PN---IQTKINLLKLLLTDKEEFRRVMIFTE---TKKNADRIVERLGDHWKGELSVL--H 275
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ Q +RL +K F +++ +V +D A+RGID V HV+ FD P P EY+ R
Sbjct: 276 SNKAQNSRLNALKVFKEGKTR----IMVSSDVAARGIDVQDVSHVINFDIPSIPEEYIHR 331
Query: 626 VGRTARGAGGTGKAFIFVVGKQ 647
+GRTAR AG G A FV K+
Sbjct: 332 IGRTAR-AGKEGTAISFVTEKE 352
>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
Length = 432
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 187/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQISDEAKELGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LI
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE IVFCNK + I ++ + + H
Sbjct: 231 ------------LIKMIEDDNPFLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D PRD Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + + +RI
Sbjct: 330 RTGR-AGNSGIAVTFATPQDEAWLRRI 355
>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
Length = 627
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 191/391 (48%), Gaps = 32/391 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-VIQ 328
F+E Y++E ++RQ + +P+ IQA +P + G+ + Q+GSGKTL Y+LP ++
Sbjct: 127 FEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAIVH 186
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQV--LSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ Q L S P +ILAPT ELA Q+ ++NC S R+ + GG +
Sbjct: 187 IIHQPRL-----SNGDGPIALILAPTRELAQQIQEVANCFGESAA---VRNTCIFGGAPK 238
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q +L GV++ IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 239 GPQAHDLDRGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKII 297
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE-EFLVDCSGDQES 505
Q L +AT P E+ L E F + G +S ++D + E
Sbjct: 298 EQIRPDRQVLMWSATWPKEV-RALAEDFLTDYTHLNIGSLTLSANHNITQIIDVCQEFEK 356
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
D +K LLQ I +KTI+F + T RKV++I + R + L H
Sbjct: 357 D--------SKLFRLLQEIGNEKENKTIIF---VETKRKVDDITRNIRRDGW--QALSIH 403
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+Q+ R ++EF + R+ LV TD A+RG+D V +V+ FD+P +Y+ R
Sbjct: 404 GDKNQQERDHVLQEFRSGRAP----ILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHR 459
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+GRT R TG A+ F + A ++E
Sbjct: 460 IGRTGR-RRQTGTAYAFFTSHNMKHAGDLIE 489
>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|335049114|ref|ZP_08542124.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
genomosp. type_1 str. 28L]
gi|333764226|gb|EGL41626.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
199-6]
Length = 520
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 208/395 (52%), Gaps = 32/395 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+ L S+ ++++L F P+ IQA + P ++G I Q+G+GKT A+ +PV+
Sbjct: 3 EKFQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ L + S + V+L+PT ELA QV L++C +++ + GG +
Sbjct: 63 EKI-------LKNEPTQSIQTVVLSPTRELAMQVAEELNHLAQCTT-IQALPIYGGQDME 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L++ +++ATPGR M +K G + L ++ +LDE D + D F + +++S
Sbjct: 115 RQLRRLRKHPQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEML-DMGFIDDINTIMS 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P T Q L +AT+P I +L E F + P + R+ +E +D +Q +
Sbjct: 174 ATPDTRQTLLFSATMPKPI-QQLAETF-----LHEPQIIRMKA--KEVTMDLI-EQSYIE 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
TP+ K L +L++ I+F T R+V+ + + ++ + H
Sbjct: 225 TPDR---QKFDVLCRLLDLQEPDLAIIFVR---TKRRVDEVAEALKKRGYSSEGI--HGD 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R + +++F R K + LV TD A+RG+D +GV HV +D P+DP YV RVG
Sbjct: 277 LTQAKRDSVIRQF---REKTIDI-LVATDVAARGLDISGVTHVFNYDLPQDPESYVHRVG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
RT R AG +G+A FV+ +++ R +ER K H
Sbjct: 333 RTGR-AGKSGEATTFVIPREMEHL-RAIERLIKRH 365
>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
DSM 15981]
gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
DSM 15981]
Length = 552
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/374 (31%), Positives = 191/374 (51%), Gaps = 29/374 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L ++ +LK +N+ P+ IQ A P V+ G+ + Q+G+GKT A+ +P +Q
Sbjct: 3 FKDLNIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTLQM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L EE K T + +++ PT ELA Q+ + + + +S VV GG QK Q
Sbjct: 63 LSGEETPRWEKRTI---KALVVTPTRELAIQIYDSFNTYGQF-TDLKSCVVYGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
ENL+ GVD+L+ATPGR + L+ + I+ + ++ +LDE D + D F ++ +I+ +
Sbjct: 119 EENLKRGVDILVATPGRLLDLMDQKIVNIEKIKILVLDEADRML-DMGFIHDVKKIIART 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P +I ++ + K+ + P + +E++L DK
Sbjct: 178 PAEKQTLFFSATMPPDIAKLAAKILKNPEKIEITPAATTVE-AIEQYLYFV------DKG 230
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NKK LL +++ + T+VF T + ++++ + + V H
Sbjct: 231 ------NKKDLLLHILKTKDLDSTLVFTR---TKHGADRVVRQLSK--SNVVAQAIHGDK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + +F + K+ R+ LV TD A+RGID + VV +D P P YV R+GR
Sbjct: 280 SQGARQRALNDF---KDKKLRV-LVATDIAARGIDIDELACVVNYDLPDVPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
T R AG G A F
Sbjct: 336 TGR-AGLEGIAISF 348
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 187/380 (49%), Gaps = 35/380 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI + + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
E DKT A++QLI + + + IVFCN + ++ L+R V
Sbjct: 241 ---EGDKT---------GAVVQLIRERGLKQVIVFCNSKIGASRLARSLER-----DGVV 283
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R+ + F + LV TD A+RG+D A + V+ FD P +
Sbjct: 284 ATAIHGDRTQNERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAE 339
Query: 621 EYVRRVGRTARGAGGTGKAF 640
+YV R+GRT R AG +G A
Sbjct: 340 DYVHRIGRTGR-AGASGDAL 358
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|298207628|ref|YP_003715807.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 424
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 191/375 (50%), Gaps = 33/375 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +++SL Q + +P+ IQA + P +++G+ + + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPIIQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L E +G K S +I+ PT ELA Q+ N + K +S V+ GG Q
Sbjct: 62 HLANDLENAKGKRKILS-----LIVTPTRELAIQIGENFSAYGKY-TSLKSTVIFGGVPQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ GVDVLIATPGR + L+ +G + L +++ +LDE D + D F ++ L+
Sbjct: 116 RAQTNKLKSGVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRML-DMGFIHDIKKLL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q LF +AT+P I ++ + K V + + ++++L ++
Sbjct: 175 TKLPKNRQSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLY------TTN 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFH 565
KT NK LL ++E + + +VF K R V +LK+ +++ H
Sbjct: 229 KT------NKGDLLLHILEDPKIDQVLVFSKTKHGADRTVRKLLKK------KIKSAAIH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R +K F + +V TD A+RGID +++V+ +D P +P YV R
Sbjct: 277 GNKSQNQRQKALKAFKDGNIR----VMVATDIAARGIDIDKLEYVINYDIPNEPETYVHR 332
Query: 626 VGRTARGAGGTGKAF 640
+GR R AG G A
Sbjct: 333 IGRCGR-AGEDGIAI 346
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 184/377 (48%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K A++QL+ + + +VFCN + ++ L+R V
Sbjct: 241 EGD---------KHGAVVQLLRDRGLKQVLVFCNSKIGASRLARNLER-----DGVVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 343 HRIGRTGR-AGATGDAL 358
>gi|340725185|ref|XP_003400954.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX5-like [Bombus terrestris]
Length = 607
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/373 (31%), Positives = 181/373 (48%), Gaps = 24/373 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + + P +ILAPT ELA Q+ S R+ + GG + Q
Sbjct: 176 INHQP----RLNRNDGPIALILAPTRELAQQI-QQVASDFGISSQVRNTCIFGGAPKGPQ 230
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 231 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 289
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 290 RPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDVCE 341
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E K LL+ I P +KTI+F + T RKV++I + +R + + H
Sbjct: 342 EYEKEGKLMKLLEEISNEPENKTIIF---VETKRKVDDITRAINRYGW--QAIGIHGDKS 396
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ R + +F SRS LV TD A+RG+D V V+ D+P + +YV R+GRT
Sbjct: 397 QQERDYVLNQFRNSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRT 452
Query: 630 ARGAGGTGKAFIF 642
R + TG A+ F
Sbjct: 453 GR-SQRTGTAYAF 464
>gi|339449340|ref|ZP_08652896.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 496
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/388 (30%), Positives = 193/388 (49%), Gaps = 39/388 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG SD +++++++ F P+ IQA P +++G+ I Q+G+GKT A+ LP++Q
Sbjct: 3 FKDLGLSDSLLKAIEKSGFDEPTPIQAQTIPLLLKGQDVIGQAQTGTGKTAAFALPILQE 62
Query: 330 --LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQ 386
L ++Q L +++PT ELA Q + L GV R VV GG
Sbjct: 63 IDLNNPDVQAL-----------VISPTRELAIQTQKEMQRLG--GVEGARVQVVYGGSDI 109
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ +L++ +++ TPGR + I L+L +++ +LDE D + N F ++S+I
Sbjct: 110 RQQIRDLKKTPQIVVGTPGRILDHINRRTLKLGHVKYLVLDEADEMLN-MGFLDDIESII 168
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q L +AT+P I V+ D K + + ++++ V +++ D
Sbjct: 169 KNIPSDRQTLLFSATMPAPIKRVGVQFMRDPKQITVKSKELTTDLVDQYYVKVKDNEKFD 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ +L + TIVFC T R+V+ + K + R L H
Sbjct: 229 ------------TMTRLFDVQTPKVTIVFCR---TKRRVDEVSKGLIARGYRAAGL--HG 271
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q+ R M EF + +LV TD A+RGID +GV +V FD P+DP YV R+
Sbjct: 272 DLTQKRRTQIMNEFKNDKIN----YLVATDVAARGIDVSGVTYVYNFDIPQDPESYVHRI 327
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG G + FV ++S + I
Sbjct: 328 GRTGR-AGHHGTSVTFVTPNEMSYLRGI 354
>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 582
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 187/388 (48%), Gaps = 20/388 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+++ +++ + N+ P+ IQA A P + G+ + ++GSGKT A+ LP+I
Sbjct: 135 ESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMI 194
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q L Q ++ P ++LAPT ELA Q+ ++ + FR+ +V GG
Sbjct: 195 QHCLAQPPIR-----RGDGPLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNI 249
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ GV++++ATPGRF+ +++G L + +LDE D + D FE ++ ++
Sbjct: 250 YEQRSELRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRML-DMGFEPQIREVM 308
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q L +AT+P EI L + + D + + G R+S + E +
Sbjct: 309 RSLPKKHQTLLFSATMPEEI-EALAQEYLDNPIRVKVG--RVSSPTANVTQNLEKITEKE 365
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K L L P TIVF + C +V + L E ++ H
Sbjct: 366 KIESLLALLVDEHSQSLDTNQPPPLTIVFVERKARCDEVTDAL-----VEQGLKATALHG 420
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R A +++F + LV TD ASRG+D GV HV+ D P+ +YV R+
Sbjct: 421 GRSQSEREAALRDFRKGTTN----ILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRI 476
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG +G+A F + + L +I
Sbjct: 477 GRTGR-AGASGRATSFYTERDMFLVAQI 503
>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 509
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 190/384 (49%), Gaps = 45/384 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ ++ + P+ IQA A PP +E + + Q+G+GKT +++LP++
Sbjct: 3 TFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G R +V GG
Sbjct: 63 MLER------GRARARMPRTLILEPTRELAAQVHEN---FEKYGKNHRLNIVLLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L + + ++DE D + D F ++ ++
Sbjct: 114 EEQYRKLERGADVLIATPGRLLDHTERGKLLMTGVELLVIDEADRML-DMGFIPDIERIV 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCS 500
P T Q LF +AT+P EI KL + F + P ++P + + LV CS
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-QKLADKF-----LQNPARIEVAPPSSTAATVTQKLVACS 226
Query: 501 GDQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
G K+ L LI ++ ++ I+FCN+ + V ++ K ++ V
Sbjct: 227 GKD----------FEKRERLRDLIRSQTDLTNAIIFCNR---KKDVADLYKSLEKHGFSV 273
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
L H +DQ +R ++ F + E L LV +D A+RG+D V HV FD P
Sbjct: 274 GAL--HGDMDQRSRTNMLQGF---KDNEITL-LVASDVAARGLDIPAVSHVFNFDVPIHA 327
Query: 620 SEYVRRVGRTARGAGGTGKAFIFV 643
+YV R+GRT R AG G AF V
Sbjct: 328 EDYVHRIGRTGR-AGREGAAFTLV 350
>gi|389877863|ref|YP_006371428.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388528647|gb|AFK53844.1| DeaD [Tistrella mobilis KA081020-065]
Length = 521
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/393 (30%), Positives = 189/393 (48%), Gaps = 41/393 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S ++ ++ + +P+ IQ A P V++G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFEDLGLSAEVLRAVTDAGYNQPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + + PR +I+ PT ELA Q+ N + K P ++ GG
Sbjct: 62 ILAQ------GRVRARMPRSLIMTPTRELAQQIAENFNTYGKY-TPLSMALLIGGVSFSD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVLIATPGR + + G + L ++R ++DE D + D F L+ + S
Sbjct: 115 QEKALDKGVDVLIATPGRLLDHFERGRVLLTDVRILVVDEADRML-DMGFIPDLERIASL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCSGD 502
P Q L +AT+P EI +L + F +M P ++P + + +V +
Sbjct: 174 LPQIRQTLLFSATMPPEI-RRLADKF-----LMNPKEVSVAPQSTAASTVRQLVVQVPNE 227
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ K+ L L+ PV I+FCN+ T + LKR V
Sbjct: 228 RA-----------KRRPLETLMRNEPVGNGIIFCNRKRTVATLYEALKRAGHD-----VG 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H + Q+ R + F +R K FL+ TD A RG+D V HV +D P +Y
Sbjct: 272 ALHGDMTQDARNETLAAFRDNRIK----FLIATDVAGRGLDIEHVSHVFNYDVPLAAEDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
+ R+GRT R AG +G A + V + L R++
Sbjct: 328 IHRIGRTGR-AGRSGTAIMLVTPEDKKLYDRVV 359
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 184/377 (48%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 146 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 257
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 258 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 314
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K SA++QL+ + + IVFCN + ++ L+R V
Sbjct: 315 EGD---------KHSAVVQLLRDRGLKQVIVFCNSKIGASRLARNLER-----DGVVASA 360
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D + V+ FD P + +YV
Sbjct: 361 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIVELPAVINFDLPFNAEDYV 416
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 417 HRIGRTGR-AGATGDAL 432
>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
Length = 425
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 187/386 (48%), Gaps = 32/386 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E +++SL + ++ +PS IQ P ++EG I Q+G+GKT + LP+
Sbjct: 2 TFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPI-- 59
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L LSK + S R +IL PT ELA+Q+ N + + + R+ V GG
Sbjct: 60 ------LNSLSKEKNHSIRALILTPTRELATQIFENIKMFGRY-MHLRACCVYGGSPAAP 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ ++ G D+LIATPGR + + G + L ++ +LDE D + D F ++ ++
Sbjct: 113 QLKAIRSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRML-DMGFIADVRKIVQQ 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P +AT+P EI ++ + K V + ++++L+ ++K+
Sbjct: 172 IPNDRITALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLI------YTEKS 225
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+KK L+ L+ + KTIVF + ++E LK E + L H
Sbjct: 226 ------SKKKVLVNLLNTESIKKTIVFTRTKIGADRLEKYLK-----EKEIACLVIHGDK 274
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q RL ++ F T++ + L+ TD A+RGID + HV+ FD P D YV R+GR
Sbjct: 275 TQGQRLNALQRFRTNQIR----ILIATDVAARGIDIKDISHVINFDLPEDIENYVHRIGR 330
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R A G + V ++++L I
Sbjct: 331 TGR-AKQEGVSISLVCKEELNLLANI 355
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 202/412 (49%), Gaps = 49/412 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S+ +I+S+ F + IQ P +EGK I Q+G+GKT A+ +P+IQ
Sbjct: 3 TFKELGLSEPLIKSVLNMGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGIPLIQ 62
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVVTGGF 384
++ + E++QG ++L PT ELA QV L+K G R++ + GG
Sbjct: 63 KIAETSEDIQG-----------IVLTPTRELAVQV---AEELNKIGQFKGIRTLPIYGGQ 108
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVA 441
Q+ L++ +++ATPGR M ++ ++L N+ ILDE D + N ED E
Sbjct: 109 EIDRQIRALKKRPHIIVATPGRLMDHMRRRTIRLQNINMVILDEADEMLNMGFVEDIETI 168
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
LQ + P Q L +AT+P +I N + D +++ G +E
Sbjct: 169 LQEI----PEARQTLLFSATMPRQIQNLAQKFMKDPELISIKGKEVTVANIE-------- 216
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
Q+ + PE K L +L++ IVF T +V+ + + +++
Sbjct: 217 -QDYLEVPEKM---KFDVLCRLLDIQSPDLAIVFGR---TKSRVDELSEALNKRGYSAE- 268
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H L Q R + M++F KE + LV TD A+RG+D +GV HV FD P+DP
Sbjct: 269 -GIHGDLSQSKRDSVMRQF-----KEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPE 322
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
YV R+GRT R AG TG A FV +++ + I + ++ ++P+ E
Sbjct: 323 SYVHRIGRTGR-AGKTGLAVTFVTPREIGHLRLIEQLTKRKITRKNIPTMIE 373
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|408788051|ref|ZP_11199774.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|424911054|ref|ZP_18334431.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847085|gb|EJA99607.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|408486129|gb|EKJ94460.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 490
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 188/388 (48%), Gaps = 31/388 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + + + R +ILAPT EL +Q+ N R+ K P R V GG
Sbjct: 63 MLMKQA----DRPANRTCRTLILAPTRELVNQIGENLRAFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KT L KKS + ++P + IVF T E + K + +V H
Sbjct: 233 KTE----LLKKS-----LNENPDGRAIVFLR---TKHGAEKLYKHLE--HIGFKVASIHG 278
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K LV TD A+RGID V HV +D P P YV R+
Sbjct: 279 NKSQGQRERALKGFKDGEIK----VLVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRI 334
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTAR AG G A F + L I
Sbjct: 335 GRTAR-AGRDGIAIAFCAPDETRLLHDI 361
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 132/419 (31%), Positives = 207/419 (49%), Gaps = 54/419 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRML-DMGFIRDIKKILAM 174
Query: 449 SPVTAQYLFVTATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
P Q L +AT EI N+ VE+ + + + +++++ C
Sbjct: 175 LPAKRQNLMFSATFSDEIRELAKGLVNQPVEISVTPR-------NAAANTVKQWI--CPV 225
Query: 502 DQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
D+ N+KSALL QLI++ + +VF T + K + E +
Sbjct: 226 DK-----------NQKSALLIQLIKQENWQQVLVFSR---TKHGANRLAKSLIQAE--IS 269
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + +F +S E R+ LV TD A+RG+D + VV FD P P
Sbjct: 270 AAAIHGNKSQGARTKALADF---KSGEVRV-LVATDIAARGLDIDQLPQVVNFDLPNVPE 325
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQ-------RIMERNR-KG-HPLHDVPSA 670
+YV R+GRT R AG G+A V ++ L + R++ER +G P+H +P +
Sbjct: 326 DYVHRIGRTGR-AGALGQAVSLVSSEETKLLRDIERLINRVLERQEVEGFSPVHALPES 383
>gi|402823501|ref|ZP_10872924.1| DEAD/DEAH box helicase [Sphingomonas sp. LH128]
gi|402262992|gb|EJU12932.1| DEAD/DEAH box helicase [Sphingomonas sp. LH128]
Length = 461
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/362 (31%), Positives = 177/362 (48%), Gaps = 37/362 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++++++ + P+ IQA PPV+ K I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLQAVEAAGYTEPTPIQAQTIPPVLMMKDLIGIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G + + PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 61 -----DILGHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNH-DLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L GVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QLKALSAGVDVLIATPGRLMDLFERGKIMLTGCELLVIDEADRML-DMGFIPDIETICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P ++ + +V
Sbjct: 174 LPANRQTLLFSATMP-PVIKKLADRFLTNPKYVEVARPASTNLNIVQHKVMVPAR----- 227
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ AL Q++ V+ IVF N+ T R++ LK+ + H
Sbjct: 228 ---------KKREALRQILRSDNVTSAIVFANRKTTVRELAKSLKQHGFSAGEI-----H 273
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVC-TDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+DQ R A ++ F K + ++C +D A+RG+D GV HV FD P P +YV
Sbjct: 274 GDMDQPARNAELERF-----KAGEVSILCASDVAARGLDVKGVSHVFNFDTPWHPDDYVH 328
Query: 625 RV 626
R+
Sbjct: 329 RI 330
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 193/399 (48%), Gaps = 50/399 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S +++++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 TFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +L + + RV+IL PT ELA+QV + + K +P RS VV GG +
Sbjct: 62 LLIPGKL-----AQANQARVLILTPTRELAAQVGESVATYGK-NLPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L + ++ +L +LDE D + D F ++ +++
Sbjct: 116 QMMKLRQGVDVLVATPGRLLDLYNQRAVKFDHLEVLVLDEADRML-DMGFIHDIKKILAV 174
Query: 449 SPVTAQYLFVTATLPVEI-------YNKLVEV-FPDCKVVMGPGMHRISPGLEEFLVDCS 500
P Q L +AT +I N VE+ + H I P
Sbjct: 175 LPKKRQNLLFSATFSNDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYP---------- 224
Query: 501 GDQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
DK N+KS LL LI+ + S+ +VF T + K+ D +
Sbjct: 225 ----VDK-------NQKSKLLIHLIQDNQWSQVLVFSR---TKHGANKLAKQLD--GAGI 268
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
H Q R + +F + + LV TD A+RG+D + HVV FD P P
Sbjct: 269 NAAAIHGNKSQGARTKALADFKGGKVQ----VLVATDIAARGLDIEQLPHVVNFDLPNVP 324
Query: 620 SEYVRRVGRTARGAGGTGKAFIFVVG---KQVSLAQRIM 655
+YV R+GRT R AG TG+A V KQ+S +R++
Sbjct: 325 EDYVHRIGRTGR-AGATGEAVSLVSADEFKQLSDIERLI 362
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 197/381 (51%), Gaps = 35/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG + ++++++ F PS IQ A P + GK I Q+G+GKT A+ +P+++
Sbjct: 4 TFKELGIAPEILKAVEDMGFEEPSPIQKAAIPIALTGKDLIGQAQTGTGKTAAFGIPILE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ ++ P+ V+L+PT ELA Q L++ +P ++ + GG +
Sbjct: 64 RI---------DTSKPGPQAVVLSPTRELAIQSAEEINHLAQY-LPIHALPIYGGQDIER 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++ ++++ATPGR M +K G + L +++ +LDE D + D F ++++++
Sbjct: 114 QFKALRKHPNIIVATPGRLMDHMKRGTIDLSHVQVLVLDEGDEMV-DMGFIDDIRTILAG 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +F +AT+P E +L E F + P + +I +D +QE +
Sbjct: 173 IPEERQTMFFSATMP-EPIRQLAETF-----LKDPELVKIKAAT--VTIDLI-EQEYIEL 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
P+ K AL +L++ IVF C +V LK+ H L
Sbjct: 224 PDR---QKFDALCRLLDMQDPELAIVFVRTKRRCDEVTEALKK-----RGYMAEGLHGDL 275
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R +++F KE + LV TD A+RG+D +GV HV FD P+DP YV RVG
Sbjct: 276 SQQKRDTVVRQF-----KEGTIDILVATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVG 330
Query: 628 RTARGAGGTGKAFIFVVGKQV 648
RT R AG TG A FV+ +++
Sbjct: 331 RTGR-AGKTGLAVTFVISREM 350
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 184/373 (49%), Gaps = 27/373 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV +N +S +K RS VV GG
Sbjct: 72 RLL--PLANTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVVFGGVDMN 128
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ +++
Sbjct: 129 PQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQRILN 187
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI KL + R +E + + +
Sbjct: 188 LLPTERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNSTATNVTQI 235
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E A +K A++QLI + + + IVFCN + ++ L+R T + H
Sbjct: 236 VYEVAEGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARQLERDGVVATAI-----HGD 290
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV R+G
Sbjct: 291 RSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIG 346
Query: 628 RTARGAGGTGKAF 640
RT R AG +G A
Sbjct: 347 RTGR-AGASGDAL 358
>gi|423222165|ref|ZP_17208635.1| hypothetical protein HMPREF1062_00821 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392643389|gb|EIY37140.1| hypothetical protein HMPREF1062_00821 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 477
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 201/413 (48%), Gaps = 41/413 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK++ S+ + +L +N+ P+ IQ A P + G+ + Q+G+GKT A+ +P+I+
Sbjct: 2 TFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPIIE 61
Query: 329 RLRQEELQGLSKSTSGSPR---VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+L L + G+PR +IL PT ELA Q+ + ++ R V+ GG +
Sbjct: 62 QL----LADPTSQQKGAPRKIRALILTPTRELAIQIDESLADYTRYTT-LRHTVIFGGVK 116
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QK+Q + L+ G D+L ATPGR + L+ +G ++L ++R +LDE D + D F ++ L
Sbjct: 117 QKSQTDELRAGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRML-DMGFIHDVKRL 175
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+P I ++L + ++ P ++P +
Sbjct: 176 LPKLPPKKQTLFFSATMPDSI-DRLAK-----SLLRNPARVEVTPASSVVEIISQSVYRV 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+K KK L QL+ + +VF T +NI + R+ + H
Sbjct: 230 EKP------QKKELLAQLLLGEAGHQVLVFSR---TKHGADNIARYLSRRG--ITCESIH 278
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q +R + F RS ++ TD A+RGID G+D V+ +D P P YV R
Sbjct: 279 GDKSQNSRQRALSNFKEGRSN----VIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHR 334
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIME------RNRKGHPLHDVPSAFE 672
+GRT R AG G+A F G++V + + I + RK HD+PS E
Sbjct: 335 IGRTGR-AGCEGRAIAFCSGEEVPMLREIEKLTGIKLEQRK----HDLPSLEE 382
>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 464
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 187/377 (49%), Gaps = 30/377 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ + P+ IQ + P ++ G+ + + Q+G+GKT ++ LP+I
Sbjct: 3 FSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR +ILAPT ELA+QV + S ++ GG Q
Sbjct: 63 LAS------GRAKARMPRSLILAPTRELAAQVAESFEKFS-THHKLNMALLIGGVSFSDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L +GVDVLIATPGR + + G + L +++ ++DE D + D F ++ ++S
Sbjct: 116 NTALDKGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRML-DMGFIPDVERIVSLL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +ATL +I+ K+ F V P + ++P + D +
Sbjct: 175 PPLRQTLFFSATLSDDIH-KISHKF-----VSNPKIIEVAPPA------STADTVAQHLQ 222
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
T +K++ L L+ V ++FCN+ R + ++K + E + H +
Sbjct: 223 WTDVKSKRAVLRDLLRVETVKNAVIFCNR---KRDISTLVKSLTKHE--FSAVAMHGDMT 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q RL + +F K L+ +D A+RG+D AG+ HV FD P + +YV R+GRT
Sbjct: 278 QSARLEALDKF----KKGEVPLLIASDVAARGLDIAGLSHVFNFDVPMNAEDYVHRIGRT 333
Query: 630 ARGAGGTGKAFIFVVGK 646
R AG +G+AF GK
Sbjct: 334 GR-AGKSGRAFTIAAGK 349
>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 414
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 179/373 (47%), Gaps = 28/373 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ S+ + SL+ F RP+ IQ A P +++G + Q+G+GKT A+ +PV+ +
Sbjct: 3 FEQYRISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPVLHK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+Q + T G R V++ PT ELA Q+ L+K + + GG Q Q
Sbjct: 63 LQQYH----PRKTKGEVRCVVMVPTRELAVQISEVFERLAKY-TKLNILGLHGGVDQAPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L +GVDVLIATPGR LI +G + L ILDE D + D F ++ ++
Sbjct: 118 LKKLAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADHML-DLGFIRDIRDVLKHL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+ +I + VV P +ISP D
Sbjct: 177 PRRHQTLFFSATIDEDIKDLA------YSVVNNPIRIQISPQ------DPVSKNVQHAVA 224
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K+ L +L+++ P +K +VF V +V ++R ++ L H +
Sbjct: 225 YVGMDDKRFFLERLVKEFPENKILVFVRTKVRAERVAAAMER-----VGIKSLTMHGGKE 279
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ RL M EF K L+ TD +RGID V++VV +D P P YV RVGRT
Sbjct: 280 QDNRLQVMDEFKKGDIK----LLITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRVGRT 335
Query: 630 ARGAGGTGKAFIF 642
RG G+A F
Sbjct: 336 GRGV-KKGQAVSF 347
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 184/377 (48%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 94 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K A++QL+ + + +VFCN + ++ L+R V
Sbjct: 263 EGD---------KHGAVVQLLRDRGLKQVLVFCNSKIGASRLARNLER-----DGVVASA 308
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 309 IHGDKSQLERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 364
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG TG A
Sbjct: 365 HRIGRTGR-AGATGDAL 380
>gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
Length = 491
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/390 (28%), Positives = 196/390 (50%), Gaps = 30/390 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ K+ RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 69 RILENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSATLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VASTVERINQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K + L ++++ V++ +VF KV L+R + H
Sbjct: 230 VIHLDHSAKPAMLATILQQDGVNQALVFTRTKHGADKVVKGLQRAG-----ITADAIHGN 284
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F R+ E R LV TD A+RGID GV HVV FD P P YV R+G
Sbjct: 285 KSQNYRERVLAAF---RTGELRT-LVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIG 340
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
RTAR AG G A G + + R +E+
Sbjct: 341 RTAR-AGAEGTAISLCAGGEETGYLRDIEK 369
>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
Length = 522
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 198/387 (51%), Gaps = 33/387 (8%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+ + + FK L SD +I +L F P+ IQ + P +EG I Q+G+GKT AY
Sbjct: 2 EVYMLEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAY 61
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+PV++++ L+ + VIL+PT ELA QV L++ P +++ + G
Sbjct: 62 GIPVLEKI-------LAAGAPKELQSVILSPTRELAIQVAEEINHLAQY-TPVQALPIYG 113
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + QL L++ +++ATPGR + +K G ++L ++ +LDE D + N F +
Sbjct: 114 GQDMERQLRRLRKSPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLN-MGFIDDI 172
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSG 501
++S++P T Q L +AT+P I KL E F D +++ +E+ ++ +
Sbjct: 173 NLIMSATPETRQTLLFSATMPAPI-QKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVAD 231
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
Q+ D L +L++ I+F T R+V+ + + ++
Sbjct: 232 RQKFD------------VLCRLLDLQEPDLAIIFVR---TKRRVDELSEGLKKRGYSAEG 276
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+ H L Q R + +++F R K + LV TD A+RG+D +GV HV +D P+DP
Sbjct: 277 I--HGDLTQAKRDSVIRQF---REKTIDI-LVATDVAARGLDISGVTHVYNYDLPQDPES 330
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQV 648
YV RVGRT R AG +G+A FV+ +++
Sbjct: 331 YVHRVGRTGR-AGQSGEATTFVIPREI 356
>gi|363752775|ref|XP_003646604.1| hypothetical protein Ecym_4775 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890239|gb|AET39787.1| hypothetical protein Ecym_4775 [Eremothecium cymbalariae
DBVPG#7215]
Length = 500
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 194/392 (49%), Gaps = 55/392 (14%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F ELG S ++++++ F +Q+QA PP++ G+ + A ++GSGKTLA+L+P I
Sbjct: 36 EKFDELGLSKQTLKAIEKMGFTTMTQVQAKTIPPLMAGRDVLGAAKTGSGKTLAFLIPAI 95
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGF 384
E L L V+++ PT ELA Q+ R L + F S +V GG
Sbjct: 96 -----EMLHSLKFKPRNGTGVIVITPTRELALQIFGVAREL----MEFHSQTFGIVIGGA 146
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVAL 442
++ + E L +GV+++IATPGR + ++ +G + NL+ I+DE D + + FE +
Sbjct: 147 NRRQEAEKLSKGVNLIIATPGRLLDHLQNTKGFI-FKNLKALIIDEADRIL-EIGFEDEM 204
Query: 443 QSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS----------PG 491
+ +I P Q + +AT ++ + ++ + PG I+ G
Sbjct: 205 KQIIKILPNEDRQSMLFSATQTTKVEDL-------ARISLRPGPLFINVDSEKETSTVDG 257
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551
LE+ V C ESDK FL L ++K K IVF + + R +L
Sbjct: 258 LEQGYVVC----ESDKR----FL----LLFTFLKKFQTKKIIVFLSSCNSVRYYAELLNY 305
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611
D + VL H Q+ R EF ++ R LVCTD A+RG+D VD ++
Sbjct: 306 ID-----LPVLELHGKQKQQKRTNTFFEFCNAQ----RGILVCTDVAARGLDIPAVDWII 356
Query: 612 LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFV 643
FD P DP +Y+ RVGRTARG G GK+ +F+
Sbjct: 357 QFDPPDDPRDYIHRVGRTARGTKGKGKSLMFL 388
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 184/373 (49%), Gaps = 29/373 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++ R
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 80 LM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIGP 136
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L+ G +VL+ATPGR + +++ + L + +LDE D + D F L+ +I
Sbjct: 137 QKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIRL 195
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG-LEEFLVDCSGDQESDK 507
P Q L +AT EI KL + + V + + + + SGDQ
Sbjct: 196 LPAQRQGLLFSATFSNEI-RKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQ---- 250
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K++A++ L++ + + IVF N + ++ L+R V+ H
Sbjct: 251 --------KRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-----DGVKAESIHGD 297
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R+ ++ F + LV TD A+RG+D AGV V+ +D P + +YV R+G
Sbjct: 298 KTQADRMKALEAFKAGELE----VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIG 353
Query: 628 RTARGAGGTGKAF 640
RT R AG TG+A
Sbjct: 354 RTGR-AGATGEAI 365
>gi|310644435|ref|YP_003949194.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
Length = 525
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/388 (29%), Positives = 188/388 (48%), Gaps = 45/388 (11%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F LG + +E+LK Q P+ +Q + P ++EG+ I +G+GKTLA+LLP++
Sbjct: 2 KNFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q+L ++ P+ +++APT ELA Q+ + L+ + V GG +
Sbjct: 62 QKLNLDKRH---------PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVE 112
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G ++I TPGR + ++ G L L ++ +LDE D + + F +++++
Sbjct: 113 RQLRKLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLH-MGFLNDVETILQ 171
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF----PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P Q + +AT+P I KL V+ D KV + +S + + +V Q
Sbjct: 172 EVPYRRQTMLFSATMPAGI-RKLARVYMNEPVDVKVKSASSVP-VSQ-IRQVVV-----Q 223
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRV 561
+D+ K+ AL+ ++ ++FC K+ L+ F+ E
Sbjct: 224 TTDR-------GKQQALVDMLNTDRPYLAVIFCRTKRRASKLNEELQEMGFESGE----- 271
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H L Q R MK F +EA+L LV TD A+RG+D GV HV +D P+D
Sbjct: 272 --LHGDLSQNKREQVMKAF-----REAKLQLLVATDVAARGLDVEGVTHVFNYDMPQDAE 324
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQV 648
Y+ R+GRT R AGG G A + V
Sbjct: 325 SYIHRIGRTGR-AGGKGVAVTLATPRDV 351
>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
15444]
gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
15444]
Length = 536
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 183/381 (48%), Gaps = 29/381 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ +F + G ++ +++++ + P+ IQ A P ++ G Q+G+GKT A++L
Sbjct: 1 MTETTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+IQRL ++ + PR +IL PT ELA+QV N K + ++ GG
Sbjct: 61 PMIQRL------STGRARARMPRCLILCPTRELAAQVAENFEKYGKY-LKLTMALLIGGV 113
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
K Q LQ GVDVLIATPGR M G L ++ + I+DE D + D F ++
Sbjct: 114 SFKEQETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRML-DMGFIPDIEK 172
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ + P Q L +AT P +I +L + F D K + + + + +F+V
Sbjct: 173 ICAKLPANRQTLLFSATFPTDI-QRLAKTFQKDPKKIEVTRPAQTAETISQFVV------ 225
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K P +++AL ++IE + V IVFCN+ V V L + P
Sbjct: 226 ---KLPTNDGKARRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHD-----AAP 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R ++ F + K LV +D A+RG+D V HV F P +YV
Sbjct: 278 IHGDLPQSVRSETLQRFRDGKLK----LLVASDVAARGLDIPDVGHVFNFGPPPKDEDYV 333
Query: 624 RRVGRTARGAGGTGKAFIFVV 644
R+GRT R AG TG+++ V
Sbjct: 334 HRIGRTGR-AGRTGESYTVVT 353
>gi|402821009|ref|ZP_10870569.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
gi|402510241|gb|EJW20510.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
Length = 481
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 197/397 (49%), Gaps = 45/397 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG + ++ ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP+I R
Sbjct: 3 FDELGLAPEIMTAINEAGYTTPTPIQAEAIPHVIAGRDVLGIAQTGTGKTASFTLPMIHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++G +K+ PR +IL PT ELA+QV N K +++++ GG Q
Sbjct: 63 L----MKGRAKAR--MPRTLILEPTRELAAQVADNFDVYGKNTKLTKALLI-GGVSFGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + G DVLIATPGR + ++ G + L + ++DE D + D F ++ ++
Sbjct: 116 EKAIMRGADVLIATPGRLLDHVERGGVLLRGVEVLVIDEADRML-DMGFIPDIERIVKLL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L E F + P ++P + + LV S Q
Sbjct: 175 PFTRQTLFFSATMPPEI-TRLTEQF-----LSAPARVEVAPPSSTNKNVSQLLVSVSKAQ 228
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K L +L ++ V+ I+FCN+ R + ++L +++ +
Sbjct: 229 ------------KLKTLKKLFDEEDVTNGIIFCNR---KRDIGDLLNAL--QKSGYPAVS 271
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +DQ RL ++ F + EA +L+ +D A+RG+D V HV +D P +YV
Sbjct: 272 LHGDMDQHMRLKMLERF---KGGEA-TYLIASDVAARGLDIPAVSHVFNYDVPTHAEDYV 327
Query: 624 RRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIMER 657
R+GRT R AG G A GK V ++++ +
Sbjct: 328 HRIGRTGR-AGRKGAAITLFSKEDGKYVDAIEKLINQ 363
>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
Length = 519
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 182/381 (47%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 MLET------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALIIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L G DVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L ++F P V P + +E+ LV +
Sbjct: 172 KMVPFTRQTLFFSATMPPEI-ERLADMFLHNPQRVEVARPAS--TATTIEQRLVATGAEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L LI S + I+FCN+ +++ L
Sbjct: 229 H----------EKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG-----FNAA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F RS E L LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQRARMAALDGF---RSGEVPL-LVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +G+AF
Sbjct: 330 VHRIGRTGR-AGRSGQAFTLA 349
>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 545
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 179/376 (47%), Gaps = 31/376 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQ A P + G+ + Q+G+GKT A+ LP+++R
Sbjct: 4 FSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVER 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR ++LAPT ELA QV + +K G +++ GG Q
Sbjct: 64 L------ASGRARARMPRAIVLAPTRELADQVAESFAKYAK-GTKLTWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L + G + L + ++DE D + D F ++ + +
Sbjct: 117 VAALNKGVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI D + + + +++V + P
Sbjct: 176 PPRRQTLFFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIV---------RIP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPFHAA 567
+ K++AL L+ ++ V IVFCN+ V LK FD H
Sbjct: 227 TSDPKAKRAALRALMSRTDVRNGIVFCNRKSEVDIVAKSLKTHGFD-------AAAIHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R + +F + K LV +D A+RG+D V HV +D +YV R+G
Sbjct: 280 LDQSHRTKTLADFRSGALK----ILVASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G+AF+ V
Sbjct: 336 RTGR-AGKLGQAFMIV 350
>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase [Methylobacterium extorquens PA1]
gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
Length = 519
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 182/381 (47%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 MLET------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALIIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L G DVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L ++F P V P + +E+ LV +
Sbjct: 172 KMVPFTRQTLFFSATMPPEI-ERLADMFLHNPQRVEVARPAS--TATTIEQRLVATGAEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L LI S + I+FCN+ +++ L
Sbjct: 229 H----------EKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG-----FNAA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F RS E L LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQRARMAALDGF---RSGEVPL-LVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +G+AF
Sbjct: 330 VHRIGRTGR-AGRSGQAFTLA 349
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 192/383 (50%), Gaps = 41/383 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++++L + + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I
Sbjct: 5 TFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSID 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RLR+ + Q KS R+++LAPT ELA Q+ + + + G+ S+V GG
Sbjct: 65 RLREADNQTPFKSC----RMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIV--GGTSVG 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
L G D+L+ATPGR + LI + +L + +LDE D + D F AL+ +
Sbjct: 119 KDRNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQML-DLGFIHALRQIND 177
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q LF +AT+P +I +LV + KV + P + ++++L D+
Sbjct: 178 LVPAERQTLFFSATMPKQI-QELVGKYCRNPVKVSVTPAAT-TAERIDQYLFMVQQDE-- 233
Query: 506 DKTPETAFLNKKSALLQLIEK------SPVSKTIVFCNKIVTCRKVENILKRFDRKETRV 559
K AL+++I K + +VF T + ++K+ ++ +
Sbjct: 234 -----------KQALIEMILKGRHAVPGKQERILVFTR---TKHGADRVVKKL--RQAGI 277
Query: 560 RVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDP 619
H Q R + EF +++ L+ TD A+RGID GV HV+ ++ P P
Sbjct: 278 ESNAIHGNKSQPQRQRALDEFKRAKTP----ILIATDVAARGIDIPGVSHVINYELPNVP 333
Query: 620 SEYVRRVGRTARGAGGTGKAFIF 642
+YV R+GRTAR AG G A F
Sbjct: 334 EQYVHRIGRTAR-AGKDGVAIAF 355
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIIAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D A + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIAELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 519
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 182/381 (47%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 MLET------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALIIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L G DVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L ++F P V P + +E+ LV +
Sbjct: 172 KMVPFTRQTLFFSATMPPEI-ERLADMFLHNPQRVEVARPAS--TATTIEQRLVATGAEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L LI S + I+FCN+ +++ L
Sbjct: 229 H----------EKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG-----FNAA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F RS E L LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQRARMAALDGF---RSGEVPL-LVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +G+AF
Sbjct: 330 VHRIGRTGR-AGRSGQAFTLA 349
>gi|409195488|ref|ZP_11224151.1| DEAD/DEAH box helicase-like protein [Marinilabilia salmonicolor JCM
21150]
Length = 427
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 35/380 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L + ++ SLK + + +P+ IQ + P ++ GK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKDLELIEPILRSLKEKGYTQPTPIQEQSIPILLGGKDLLGCAQTGTGKTAAFSIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ PR+ +I+ PT ELA Q+ + K R++V+ GG +Q
Sbjct: 62 NIYLNSSADNQSRRRRKPRLKALIVTPTRELAIQIGESLTDYGKY-TGIRNIVIFGGVKQ 120
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q ++LQ G D+L+ATPGR + LI +G + L + +LDE D + D F ++ +I
Sbjct: 121 GAQTQSLQRGTDILVATPGRLLDLISQGFISLREIEYFVLDEADRML-DMGFIHDVRKII 179
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG-PGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+ EI V K++ G PG I+P +
Sbjct: 180 NLLPAKRQSLFFSATMAPEI------VKLSGKILGGNPGKVTITP----------KQNTA 223
Query: 506 DKTPETA-FLNKKSA---LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+K ++ +++KKS L+ L+E++P T+VF K+ ILK+ +
Sbjct: 224 EKVDQSIYYVDKKSKSRLLVHLMEENPEDSTLVFSRTKHGADKIVKILKK-----AGINA 278
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
L H Q R + +F +S EA + LV TD A+RGID +G+ V+ +D P P
Sbjct: 279 LAIHGNKSQGARQKALGDF---KSGEASV-LVATDIAARGIDVSGLGRVINYDLPNIPET 334
Query: 622 YVRRVGRTARG-AGGTGKAF 640
YV R+GRT R A GT +F
Sbjct: 335 YVHRIGRTGRANAEGTALSF 354
>gi|395804393|ref|ZP_10483633.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
gi|395433492|gb|EJF99445.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
Length = 415
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 27/372 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L S + +++ + +L P+ IQ + P V+ G+ I Q+G+GKT A+ +P+I +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPVVLSGRDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G SK R +++ PT ELA Q+ + + K + + GG Q Q
Sbjct: 63 LHR--IVGSSKKAK-QIRALVVTPTRELAVQIGESFDTYGKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L++GVD+LIATPGR + L K+G L L +L +LDE D + D F ++ ++ +
Sbjct: 119 VETLKKGVDILIATPGRLLDLHKQGFLDLNHLHTLVLDEADQML-DMGFINDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLLFSATMPIAI-RELAEMF-----LQDPAKVEVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K++ L LI++ +S +VF T +N++K +K+ +P A
Sbjct: 226 FVDKTEKRNLLYSLIKEENLSNVLVFSR---TKHGADNVVKALRKKD-----IPAEAIHG 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
+++ A + ++KE + LV TD A+RGID + +V+ FD P P YV R+GRT
Sbjct: 278 DKSQNARQRVLDAFKNKEVGV-LVATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRT 336
Query: 630 AR-GAGGTGKAF 640
R G GG +F
Sbjct: 337 GRAGNGGIAISF 348
>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 530
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 190/391 (48%), Gaps = 37/391 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++++ + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 4 FADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILST 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K + +PRV++++PT ELA Q+ C +S+ F + V GG Q
Sbjct: 64 LPR------VKGRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHF-TTTVFGGTPYGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G DVLIATPGR L+K G++ L ++ +LDE D + D F + +++ ++
Sbjct: 117 IKELRGGTDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRML-DMGFLPDVTTIVDAT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+ I L + D +V + +E+F++
Sbjct: 176 PECRQTLLFSATIDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKN-------- 227
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFC---NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
NK L ++ + + IVF N+ C E + R E+ H+
Sbjct: 228 ----FNKPELLEAVLREKGSERIIVFARTKNRTEDC--AEALCDAGFRAES------IHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R ++ F ++ LV TD +RGID VDHV+ FD P P +YV R+
Sbjct: 276 DKSQGARRRALENFRRGKTS----ILVATDVLARGIDVPDVDHVINFDLPDMPEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
GRT R AG G A FV ++ S R +ER
Sbjct: 332 GRTGR-AGEKGYAISFVT-RETSRTLRDIER 360
>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ATCC 17745]
gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ATCC 17745]
Length = 432
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 187/387 (48%), Gaps = 33/387 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQISDEAKELGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LIS
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIS 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L+++IE IVFCNK + I ++ + + H
Sbjct: 231 ------------LIKMIEDDNPFLAIVFCNK-----REGAIRLSYELTAAGLNIAEMHGD 273
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R +++F ++++ LV TD A+RGID G+ HV +D P D Y+ R+G
Sbjct: 274 LTQGRRTQILRDFAKAKTQ----ILVATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIG 329
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG +G A F + + +RI
Sbjct: 330 RTGR-AGNSGIAVTFATPQDEAWLRRI 355
>gi|414165169|ref|ZP_11421416.1| hypothetical protein HMPREF9697_03317 [Afipia felis ATCC 53690]
gi|410882949|gb|EKS30789.1| hypothetical protein HMPREF9697_03317 [Afipia felis ATCC 53690]
Length = 500
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 112/399 (28%), Positives = 196/399 (49%), Gaps = 30/399 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALTEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ K+ RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 63 RILENRVRPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSATLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + +GV+VL+ATPGR + L++ ++L + +LDE D + D F ++ +++
Sbjct: 118 QVRAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRML-DMGFINDIRKVVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 177 LPARRQTLFFSATMPKDIAELAEHMLRDPARVAVTP-------------VASTAERIVQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K L +LI+ PV++ +VF KV L++ +P A
Sbjct: 224 IIQVDHSAKPGILSELIKSEPVNRALVFTRTKHGADKVVRSLEKAG--------IPAQAI 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+++ + + R+ + R LV TD A+RGID G+ HV FD P P YV R+G
Sbjct: 276 HGNKSQNHRERVLASFRNGDIRT-LVATDIAARGIDVDGITHVFNFDLPNVPETYVHRIG 334
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
RTAR AG G A V G++ + + I R P D
Sbjct: 335 RTAR-AGAEGTAISLVAGEENTYLRDIERLTRVSLPRED 372
>gi|225560188|gb|EEH08470.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus G186AR]
Length = 539
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 194/409 (47%), Gaps = 56/409 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SL RP+ IQ P +++G+ CI ++GSGKT+A+ P++Q
Sbjct: 110 SFASLGLAPWLVGSLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQ 169
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 170 KWAEDPFGIFA---------VILTPTRELALQIFEQIKAIS-APQSLKPILITGGTEMRP 219
Query: 389 QLENLQEGVDVLIATPGRFMFLI----KEGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR I + I L R + DE D L D
Sbjct: 220 QAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDV 279
Query: 439 EVALQSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497
E L +L P TA Q L TAT V P+ + + M R + L F+
Sbjct: 280 ETCLSAL---PPSTARQTLLFTAT-----------VTPEVRALK--SMPRPANKLPIFVT 323
Query: 498 DCSGDQESDKTP-------ETAFLNKKSALLQLIEKSPVSK--TIVFCNKIVTCRKVENI 548
+ S + ++ P + ++++ L LI S+ I+FCN+ T VE +
Sbjct: 324 EVSTENKASIPPTLKQTYLQVPLTHREAFLHTLISTEANSQKPAIIFCNRTKTADLVERM 383
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
L+R RV H+ L Q R AN+ F R+ AR+ LV TD A+RG+D V
Sbjct: 384 LRRLGH-----RVTSLHSLLPQSERTANLSRF---RASAARI-LVATDVAARGLDIPSVS 434
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
V+ FD PR+P +YV RVGRTAR AG G+A V + V L I +R
Sbjct: 435 LVINFDVPRNPDDYVHRVGRTAR-AGREGEAVTLVGQRDVQLVLAIEDR 482
>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 183/387 (47%), Gaps = 18/387 (4%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+++ +++ + + RP+ IQA A + G+ + ++GSGKT A+ +P+I
Sbjct: 115 ESFEDMCLHQSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMI 174
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L + P ++LAPT ELA Q+ + S+ FR+ +V GG
Sbjct: 175 QHC----LAQPTVRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIA 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ GVDV++ATPGR + +++G L + +LDE D + D FE ++ ++
Sbjct: 231 DQRLELRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRML-DMGFEPQIREVMR 289
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ P Q L +AT+PVEI E V + + + + L S ES+K
Sbjct: 290 NLPEKHQTLLFSATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVS---ESEK 346
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L + A P TIVF + C +V L ++ + H
Sbjct: 347 IDCLLALLVEDASQAERSNQPFPLTIVFVERKTRCNEVAEAL-----VAQALQAVALHGG 401
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R A +++F + + LV TD ASRG+D GV HV+ D P+ +YV R+G
Sbjct: 402 RSQSDREAALRDFRSGSTS----ILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIG 457
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG TG+A F + + L +I
Sbjct: 458 RTGR-AGSTGQATSFYTDQDLFLVAQI 483
>gi|404448285|ref|ZP_11013278.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765906|gb|EJZ26781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 452
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 197/411 (47%), Gaps = 48/411 (11%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ + ++ +++ + +P+ IQ A P + G + Q+G+GKT AY+LP++
Sbjct: 6 QSFENFKLNKQLLNAVEDSGYTKPTPIQEKAIPLTLAGHDVLGIAQTGTGKTAAYVLPIL 65
Query: 328 QRLRQEELQGLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++ K GS PRV+ILAPT EL Q+ + K R + + GG
Sbjct: 66 MKI---------KYAQGSHPRVLILAPTRELVMQIEEAVITFGKY-TDLRFVSLYGGLGP 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
KTQ+EN+Q GVD++I+TPGRF+ L K+G L ++ +LDE D + D F ++S++
Sbjct: 116 KTQIENIQAGVDIIISTPGRFLDLYKKGELFTKEIKTMVLDEADKML-DMGFMPQIRSIL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF--LVDCSGDQE 504
P Q L +AT GP + + S EF V+ +
Sbjct: 175 EIIPTKRQNLLFSATF-------------------GPKVDKFSQEFLEFPERVEVAPQAT 215
Query: 505 SDKT-----PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
+ +T E + K LL+ L+ +++ IVF V + L+R E R
Sbjct: 216 TAETIHQVKYEVPNIKTKINLLEHLLIDETLNRIIVFTKSRKNAESVYSYLERKKLGEIR 275
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
V HA Q TR+ +M++F + LV TD A+RG+D + V HV+ FD P
Sbjct: 276 V----IHANKGQNTRINSMEDFKAGTVR----ILVATDVAARGLDISMVSHVINFDVPLI 327
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
+YV R+GRT R A G A FV ++ +I E R P+ +PS
Sbjct: 328 YEDYVHRIGRTGR-AENDGIAITFVNPAEIYHFGKIEEIIRMQVPVVQIPS 377
>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 551
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 192/406 (47%), Gaps = 34/406 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G ++ ++ +L ++ P+ IQ A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 42 FTDFGLAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHR 101
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L E + + RV++L+PT ELASQ+ S S G +P+ S VV GG
Sbjct: 102 LSLENRRAPRRGC----RVLVLSPTRELASQI---AESFSDYGRHLPYTSTVVFGGVNIS 154
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 155 RQERAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQML-DLGFIHALKRIVK 213
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P I + + V + + +++ ++ C
Sbjct: 214 MLPARRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFC-------- 265
Query: 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K ALL + + P + + +VF T + +++ D+ + H
Sbjct: 266 -----HTGAKQALLNHVLRDPKIERVLVFTR---TKHGADRVVRGLDK--VGIVGAAIHG 315
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F R R+ LV TD A+RGID GV HVV +D P P YV R+
Sbjct: 316 NKSQPQRERALAAF---RDGSCRV-LVATDIAARGIDVEGVTHVVNYDLPNVPESYVHRI 371
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
GRTAR AG G+A F ++ + + I R+ P+ P F+
Sbjct: 372 GRTAR-AGAEGQAISFCNDEERAYLRDIERTTRQKVPVVGFPEGFQ 416
>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 556
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 183/386 (47%), Gaps = 29/386 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 20 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 79
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ + + + R +ILAPT EL +Q+ N + + R VV GG Q
Sbjct: 80 L----LKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRK-TALRINVVVGGASINKQ 134
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ G D+L+ATPGR + LI L L + +LDE D + D F L+ +
Sbjct: 135 QLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQML-DLGFIHDLRKISKMV 193
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT+P I + E + KV + P + + +E+++ SG
Sbjct: 194 PAKRQTMLFSATMPKTIADLAAEYLTNPVKVEVSP-PGKAADKVEQYVHFVSGQN----- 247
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K L + I +P + +VF T E ++K + H
Sbjct: 248 ------HKTEILKESISANPDGRAMVFLR---TKHGAEKLMKHLE--HVGFAAASIHGNK 296
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+GR
Sbjct: 297 SQGQRERALKGF---RDGEVRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGR 352
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
TAR AG G A F + L + I
Sbjct: 353 TAR-AGRDGIAIAFCAPDEARLLRDI 377
>gi|357454677|ref|XP_003597619.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|358344685|ref|XP_003636418.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
gi|355486667|gb|AES67870.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355502353|gb|AES83556.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 499
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 192/390 (49%), Gaps = 30/390 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + DY++E +K+ F+ P+ IQ+ +P ++G+ I ++GSGKTLAYLLP I
Sbjct: 95 KSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 154
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFR 385
+ + + P V++LAPT ELA Q+ +K G R S + GG
Sbjct: 155 VHVNAQPIL----DPGDGPIVLVLAPTRELAVQIQQEA---TKFGASSRIKSTCIYGGVP 207
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ +LQ+GV+++IATPGR + +++ L + +LDE D + D F+ ++ +
Sbjct: 208 KGPQVRDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRML-DMGFDPQIRKI 266
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+S Q L+ +AT P E+ +L F + P +++ G E+ + + Q
Sbjct: 267 VSQIRPDRQTLYWSATWPKEV-EQLARQF-----LYNP--YKVIIGSEDLKANHAIKQYV 318
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
D PE +K LL+ I S+ ++F + C ++ L R D L H
Sbjct: 319 DIVPEKQKYDKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQL-RMDGWPA----LSIH 371
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + EF + +S + TD A+RG+D V +V+ +DFP +YV R
Sbjct: 372 GDKSQAERDWVLSEFKSGKSP----IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 427
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
+GRT R AG G A+ F A+ ++
Sbjct: 428 IGRTGR-AGAKGTAYTFFTAANARFAKELI 456
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI D + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 241 EGD---------KQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIER-----DGIVAAA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D + V+ FD P + +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIVELPAVINFDLPFNAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|413950350|gb|AFW82999.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 778
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 199/418 (47%), Gaps = 39/418 (9%)
Query: 246 YEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
Y T+ ++RH+ + GD SF+ G +++ ++R F P+ IQA ++P +
Sbjct: 121 YPSTEAYRRRHEITVTGDNVPAPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAM 180
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
+ + + ++GSGKTL YLLP +++ L ST P V++LAPT ELA+Q+L
Sbjct: 181 QNQDVVAIAKTGSGKTLGYLLPGFMHIKR-----LQNSTRNGPTVLVLAPTRELATQILD 235
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
+ + GG + QL +L GVDV++ATPGR +++ + L +
Sbjct: 236 EAMKFGRSSR-ISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVSY 294
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE---IYNKLVEVFPDCKVV 480
+LDE D + D FE ++ ++ P Q L TAT P E I + L+ V P +V
Sbjct: 295 LVLDEADRML-DMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLL-VHP-LQVT 351
Query: 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNK 538
+G ++E + + + Q E ++K L+ I +S V SK ++FC
Sbjct: 352 IG--------NVDELVANSAITQHI----EVITPSEKQRRLEQILRSQVSGSKILIFCTT 399
Query: 539 IVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRA 598
C ++ L R + H Q R + F + RS LV TD A
Sbjct: 400 KRMCDQLARTLTR------QFGASAIHGDKSQSEREKVLNHFRSGRSP----ILVATDVA 449
Query: 599 SRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+RG+D + V+ +DFP +YV R+GRT R AG TG A+ F + A +++
Sbjct: 450 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGR-AGATGVAYTFFCDQDSKYAADLIK 506
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 191/377 (50%), Gaps = 36/377 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E G ++ ++ ++K + + P+ IQ P + EG+ + Q+G+GKT A++LP++
Sbjct: 2 KNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL ++ K + R +ILAPT ELASQ+ + R+ + P + V+ GG +
Sbjct: 62 TRLAEDR----KKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVA-VIFGGVKPG 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L +G+D++IATPGR + G ++L +LDE D + D F A++ ++
Sbjct: 117 PQLRALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQML-DLGFAPAIRRILG 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q + ++AT+P++I N E + ++ + P +S +E+ DQ
Sbjct: 176 KLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAP----VSRPIEKI------DQS-- 223
Query: 507 KTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
FLN K++ALL ++ + + + IVF +V L++ +
Sbjct: 224 ----VRFLNSSSKRAALLDILSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAI---- 275
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R ++ F R K LV TD A+RGID GV HVV ++ P P YV
Sbjct: 276 -HGNKSQRNREKSLDGFKNGRIK----ILVATDIAARGIDIDGVSHVVNYELPNVPEAYV 330
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRTAR AG +G A
Sbjct: 331 HRIGRTAR-AGKSGVAV 346
>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 415
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/411 (31%), Positives = 197/411 (47%), Gaps = 44/411 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++ F P+ +Q+ A P V+ G + + Q+GSGKT A+ LP++QR
Sbjct: 3 FSALGLSPALVQAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
L Q + Q + R +IL PT ELA+QV RSL + P + VV GG
Sbjct: 63 L-QADAQNAPRHV----RALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G DV++ATPGR + L++ L+L ++ +LDE D L D F LQ ++
Sbjct: 118 QMMGLRGGADVVVATPGRLLDLVEHNALRLGSVEHLVLDEADRLL-DLGFAEELQRILQL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q L +AT P + ++ G+ V + D
Sbjct: 177 LPVRRQNLLFSATF-------------------APAVQALAEGMLHEPVRVTVDDAPANV 217
Query: 509 P---ETAF---LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
P + AF +++ LL L+++ S+ +VF + T E++ ++ + +
Sbjct: 218 PAIAQRAFAVDAQRRTQLLRHLVQEHQWSRVMVF---VATQYAAEHVAEKL--YKAGIFA 272
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
PFH L Q R ++EF R + +V TD A+RGID A + VV +D PR +
Sbjct: 273 TPFHGGLSQGARTQVLQEFKDDRWQ----VVVTTDLAARGIDIAQLPAVVNYDLPRSADD 328
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
YV R+GRT R AG +G A FV + + I +R P VP FE
Sbjct: 329 YVHRIGRTGR-AGESGVAVSFVSAATEAHFRLIEKRQHLSLPREVVPG-FE 377
>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
Length = 517
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 182/381 (47%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 MLET------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALIIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L G DVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L ++F P V P + +E+ LV +
Sbjct: 172 KMVPFTRQTLFFSATMPPEI-ERLADMFLHNPQRVEVARPAS--TATTIEQRLVATGAEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L LI S + I+FCN+ +++ L
Sbjct: 229 H----------EKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG-----FNAA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F RS E L LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQRARMAALDGF---RSGEVPL-LVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +G+AF
Sbjct: 330 VHRIGRTGR-AGRSGQAFTLA 349
>gi|294886929|ref|XP_002771924.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
marinus ATCC 50983]
gi|239875724|gb|EER03740.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
marinus ATCC 50983]
Length = 582
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 119/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FFS K F +L D + E+L NF + IQA A P +++GK + A ++GSGKTLA+L
Sbjct: 82 FFSDKKFTDLQICDPLKEALTTCNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFL 141
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTG 382
+P ++ L Q K+ +G V++++PT ELA Q+ C+ L ++ +V G
Sbjct: 142 VPALELLVATRFQ--PKNGTG---VMVISPTRELAMQIYDVCKRLVDSTKLSQTYGIVMG 196
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
G +K + + L G+++++ATPGR + L NL ++DE D + FE
Sbjct: 197 GVNRKNEADKLSRGINIIVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQ-IGFEED 255
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVE------VFPDCKVVMGPGMHRISPGLEEF 495
+ ++ P Q +AT ++ N L +F K + GL +
Sbjct: 256 MNQILKILPKKRQTSLFSATQTQKV-NDLARLSLKKPIFVQSKGADDDAAISTASGLVQG 314
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
V GD ++ L ++K+ K +VF + + + + +L D
Sbjct: 315 YVVVGGD------------DRLRLLFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYID-- 360
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
+ V+ H Q R+ N F S L+CTD A+RG+D VD +V +D
Sbjct: 361 ---IPVISIHGQKKQSARMTNFYRFCQMESG----ILLCTDVAARGLDIPKVDWIVQYDP 413
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL 650
P DP EY+ RVGRTARGA GTGKA +F++ +++
Sbjct: 414 PDDPKEYIHRVGRTARGAEGTGKALLFLMPEELGF 448
>gi|410862930|ref|YP_006978164.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
gi|410820192|gb|AFV86809.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
Length = 480
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 206/400 (51%), Gaps = 44/400 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V+EGK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G K ++ + R +IL PT ELA+QV + + S+ +P ++ VV GG
Sbjct: 62 RL----MSG-PKVSANNVRALILTPTRELAAQVEESICAFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 116 QMIKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLKL 174
Query: 449 SPVTAQYLFVTATLPVEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI K + P + P + +E+ LV D
Sbjct: 175 LPEDRQSLLFSATFSDEITTLAKTITRNP-VSISTAPANTTVD-AVEQHLVTI------D 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV--LPF 564
K+ +T +AL+ LI++ + +VF + ++ R K TR ++
Sbjct: 227 KSKKT------TALICLIKQQKWEQVLVFS-------RTKHGANRIAEKLTRSKIPSAAI 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + +F K LV TD A+RGID + + VV D P ++YV
Sbjct: 274 HGNKSQGARTKALADFKNGDIK----VLVATDIAARGIDISELPIVVNLDLPNTAADYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMER 657
R+GRT R AG +G+A+ FV +++ +L Q+++ R
Sbjct: 330 RIGRTGR-AGASGQAWSFVSAEELQNLKDIETLIQKLLPR 368
>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703391|gb|EMD43850.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba
histolytica KU27]
Length = 684
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 184/379 (48%), Gaps = 30/379 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G + + + ++ + P+ IQ A P ++ G I ++GSGKT AYL+P+I R
Sbjct: 15 FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +G+ R +I+ PT ELA Q + L K ++ ++ GG + Q
Sbjct: 75 LETHSTEGV--------RSLIICPTRELALQTIKVFNELGKL-TNLKASLIIGGSKLSDQ 125
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+NL G D+++ATPGR F+++ + L + DE D++F + F + ++
Sbjct: 126 FDNLSSGPDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMF-ESGFSEQVSDIMRML 184
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q L +ATLP + L +++ R+SP L+ F +E +K
Sbjct: 185 PPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHV---KEHEKEG 241
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+L +T+VFC + ILK FD K + + F A D
Sbjct: 242 HLLYLLLDLI-------GDKEQTVVFCATRHEVEYLNEILKIFDIKTS----IMFGKA-D 289
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ R N+K+F R +E + LV TD A+RG+D +D+V+ +DFP P Y+ R GR
Sbjct: 290 QQEREINLKKF---RKQETHVLLV-TDVAARGVDIPELDNVINYDFPATPKLYIHRCGRV 345
Query: 630 ARGAGGTGKAFIFVVGKQV 648
AR AG GK + FV +V
Sbjct: 346 AR-AGRMGKCYNFVQTDEV 363
>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 505
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 186/390 (47%), Gaps = 34/390 (8%)
Query: 282 SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341
SLK + P+ IQ A P ++EG + Q+G+GKT A+ LP++Q L + K
Sbjct: 18 SLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQNLSKHT----RKI 73
Query: 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLI 401
SPR +IL PT ELA Q+ N + SK + + V+ GG Q Q+ LQ GVD+LI
Sbjct: 74 EPKSPRCLILTPTRELAIQIHENIEAYSKH-LNMKHAVIFGGVGQNPQVRALQGGVDILI 132
Query: 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461
ATPGR M L + L+L + +LDE D + D F ++ ++ P LF +AT
Sbjct: 133 ATPGRLMDLHGQKHLKLDRVEIFVLDEADRML-DMGFMQDIKKILPLLPQKRHNLFFSAT 191
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
+P EI + + K V + + +E+ ++ Q+ D LL
Sbjct: 192 MPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLD------------LLL 239
Query: 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
+++ +SK +VF +V + L + V H Q R ++EF
Sbjct: 240 HILKDESLSKVLVFVQMKYGANRVVDRLTK-----AGVAAAGIHGDKSQNQRQRALEEF- 293
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFI 641
++ + R+ LV TD A+RGID G+ HV+ + P P YV R+GRTAR AG TG +
Sbjct: 294 --KNGDVRV-LVATDIAARGIDIDGITHVINLELPHIPESYVHRIGRTAR-AGATGISIS 349
Query: 642 FVVGKQVSLAQRIMERNR------KGHPLH 665
F ++ S I + R + HP H
Sbjct: 350 FCTAEERSFLFAIEKTTRTKVTVVEDHPFH 379
>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406709269|ref|YP_006763995.1| ATP-dependent RNA helicase [Streptococcus agalactiae GD201008-001]
gi|424049656|ref|ZP_17787207.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648929|gb|EIM70418.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406650154|gb|AFS45555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae GD201008-001]
Length = 528
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 187/375 (49%), Gaps = 35/375 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S ++ ++++ F+ PS IQ M P +EGK I Q+G+GKT A+ LP + +
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
+ E+ + + +I+APT ELA Q + GV RS V GG +
Sbjct: 63 IHTED---------NTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRS--VYGGSSIEK 111
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ G V++ TPGR + LIK L+L ++ ILDE D + N F ++++IS
Sbjct: 112 QIKALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLN-MGFLEDIEAIISR 170
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT+P I V+ D + V + ++++ V +++ D
Sbjct: 171 VPETRQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFD-- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ +L++ +IVF T R+V+ + + + R + H L
Sbjct: 229 ----------TMTRLMDVDQPELSIVFGR---TKRRVDELTRGLKLRGFRAEGI--HGDL 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ RL +++F LV TD A+RG+D +GV HV +D P+DP YV R+GR
Sbjct: 274 DQNKRLRVIRDFKNDHID----ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGR 329
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G++ FV
Sbjct: 330 TGR-AGKSGQSITFV 343
>gi|451941693|ref|YP_007462330.1| ATP-dependent RNA helicase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901080|gb|AGF75542.1| ATP-dependent RNA helicase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 467
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/383 (31%), Positives = 195/383 (50%), Gaps = 36/383 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S +I+++K + P+ IQ+ P V++ K + Q+G+GKT +++LP
Sbjct: 4 SLKSFDDLGLSTKVIKAVKSAGYTVPTPIQSGTIPHVLKRKDVLGIAQTGTGKTASFVLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGG 383
++ L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 64 MLTLLEK------GRARARMPRTLILEPTRELAAQVEEN---FDKYGINHRLNVALLIGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q L+ G DVLIATPGR + + G L ++ + ++DE D + D F ++
Sbjct: 115 VSFEQQDRKLERGADVLIATPGRLLDHFERGKLLMMGVEILVIDEADRML-DMGFIPDIE 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGD 502
+ +P T Q LF +AT+ EI +KL + F V V + + + LV SG+
Sbjct: 174 RICKLTPFTRQTLFFSATMAPEI-SKLTQQFLHSPVSVEVTKASSTATTITQRLVK-SGN 231
Query: 503 QESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
D K++ L +LI E + I+FCN+ + + + + R + V
Sbjct: 232 NSWD---------KRAVLRELIHNEGDELKNAIIFCNR---KKDISELFRSLIRHDFSVG 279
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
L H +DQ R+ + +F ++ K FLV +D A+RG+D V HV +D P
Sbjct: 280 AL--HGDMDQHARMNTLADFKNNKLK----FLVASDVAARGLDIPAVSHVFNYDVPTHAE 333
Query: 621 EYVRRVGRTARGAGGTGKAFIFV 643
+Y+ R+GRT R A +GKAF V
Sbjct: 334 DYIHRIGRTGR-ANRSGKAFTIV 355
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/391 (30%), Positives = 194/391 (49%), Gaps = 41/391 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L + +++++K + +P+ IQ A P ++ GK + + Q+G+GKT AY+LP +Q
Sbjct: 2 TFTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--GGFRQ 386
L G KS+ PRV+ILAPT ELA Q+ + ++K G + + + GG
Sbjct: 62 ------LLGAHKSSK--PRVLILAPTRELAGQI---TKVIAKYGKFMKPNIASFVGGVSY 110
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
QL+ L +D++IATPGR M ++ L L + ILDE D + D F A++ ++
Sbjct: 111 DRQLKELSRPIDIVIATPGRLMDHMENRRLDLSRIEMLILDEADRML-DMGFIPAIKRIV 169
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDC---KVVMGPGMHRISPGLEEFLVDCSGDQ 503
++P + Q L +AT +KL+ V D V + ++ P L + + S D
Sbjct: 170 KATPKSRQTLLFSATAD----DKLMSVMKDLLKNPVRINISQDKVDPKLIKQEIYMSRDS 225
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+K L QL+++ + K I+F T R + + ++ P
Sbjct: 226 R----------HKNQVLAQLLDQQNIFKAIIFS---ATKRHASKLATQL--RDNGYAASP 270
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R + +F T + FLV TD A+RGID + V HV+ +D PR +YV
Sbjct: 271 MHGDLKQNARNRTLAQFRTGEVQ----FLVATDVAARGIDVSDVSHVINYDLPRFHEDYV 326
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
R+GRT R AG TG A + ++ Q I
Sbjct: 327 HRIGRTGR-AGKTGVAISIALHSEMKQLQSI 356
>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
manganoxydans SI85-9A1]
gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
manganoxydans SI85-9A1]
Length = 455
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 180/381 (47%), Gaps = 32/381 (8%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ FK G +D ++ +L R + +P+ IQA A P V++G+ + Q+G+GKT A+ L
Sbjct: 1 MTHTDFKAFGLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
PVI L + + +P+V++L PT ELASQ+ N +S + G V+ GG
Sbjct: 61 PVIDAL----IAKGGRPAPKTPKVLVLTPTRELASQIAGNVKSYT-AGTKLTHHVIFGGV 115
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+E ++ GVD++IATPGR + L+ + L L + +LDE D + D F +
Sbjct: 116 SIRPQIEAMRRGVDIVIATPGRLLDLLNQRALTLSEVHHVVLDEADRML-DMGFVKDVMR 174
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE--FLVDCSGD 502
++S P Q L +AT+P + ++ + V + + FLV
Sbjct: 175 IVSQLPADRQSLLFSATMPRAMEELAAKILTNPVRVEVTPEVVTVEKINQSVFLV----- 229
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
P+ A KK L++ + K KT++F K+ D ++ +
Sbjct: 230 ------PQKA---KKLWLIEHLAKPDFEKTVIFTRTKHGANKLAA-----DLEKAGIDAR 275
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + EF T LV TD +RGI + HVV FD P +P Y
Sbjct: 276 AIHGNKSQGARQKALGEFQTGTVS----VLVATDIVARGIHVDDISHVVNFDLPEEPESY 331
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRTAR AG +G A V
Sbjct: 332 VHRIGRTAR-AGKSGIAVALV 351
>gi|22536941|ref|NP_687792.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
Length = 528
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 187/375 (49%), Gaps = 35/375 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S ++ ++++ F+ PS IQ M P +EGK I Q+G+GKT A+ LP + +
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
+ E+ + + +I+APT ELA Q + GV RS V GG +
Sbjct: 63 IHTED---------NTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRS--VYGGSSIEK 111
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ G V++ TPGR + LIK L+L ++ ILDE D + N F ++++IS
Sbjct: 112 QIKALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLN-MGFLEDIEAIISR 170
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT+P I V+ D + V + ++++ V +++ D
Sbjct: 171 VPETRQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFD-- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ +L++ +IVF T R+V+ + + + R + H L
Sbjct: 229 ----------TMTRLMDVDQPELSIVFGR---TKRRVDELTRGLKLRGFRAEGI--HGDL 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ RL +++F LV TD A+RG+D +GV HV +D P+DP YV R+GR
Sbjct: 274 DQNKRLRVIRDFKNDHID----ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGR 329
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G++ FV
Sbjct: 330 TGR-AGKSGQSITFV 343
>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
6242]
gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
Length = 522
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/381 (32%), Positives = 188/381 (49%), Gaps = 46/381 (12%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SFK+LG D ++ S++ + F P++IQ MA P ++EGK I +GSGKTLA+ +I
Sbjct: 2 ESFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGII 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q++ E+ G+ R ++L PT ELA QV ++ + S+ R + GG
Sbjct: 62 QKI--EKGNGI--------RALVLTPTRELAEQVQNSLKEFSRHK-QLRVAPIYGGVAIN 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L E DV++ATPGR + I+ G + L ++ +LDE D + D F ++ +I
Sbjct: 111 PQIRQL-ERADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRML-DMGFIDDVEEIID 168
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT V D + + M+ S + VD SDK
Sbjct: 169 ECPSDRQTMMFSAT-----------VSKDIQYLSSKYMNNPSKVFAKAYVD------SDK 211
Query: 508 TPETAFLN-----KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ +++ K S L+ L++ +VFCN V+ L++ D + +
Sbjct: 212 LKQV-YIDVPKKMKFSLLVHLLKSEKSGLVMVFCNTRSNVDFVQKNLRKND-----IDAI 265
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + + +F +S + LVCTD A+RG+D V HV FD P DPSEY
Sbjct: 266 AIHGGHTQAKRKSTLSKFHSSNAHA----LVCTDVAARGLDIPHVSHVYNFDIPDDPSEY 321
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRTAR AG GK V
Sbjct: 322 VHRIGRTAR-AGREGKVINVV 341
>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
Length = 471
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 184/381 (48%), Gaps = 35/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG SD ++ ++ + P+ IQA A P V+E + + Q+G+GKT ++ LP++
Sbjct: 2 TFKTLGLSDKVLSAVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G + V + GG
Sbjct: 62 LLEK------GRARARMPRTLILEPTRELAAQVQEN---FEKYGTNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 GEQDKKLDRGTDVLIATPGRLLDHFERGKLLLQGVEVLVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI +L E F + V S + +L G
Sbjct: 172 KLIPFTRQTLFFSATMPPEI-QRLTETFLQNPARVEVARTSSTSENISHYLRAAEGKD-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K++ L +L+E + ++ IVFCN+ R + + + +R V L
Sbjct: 229 --------YEKRAVLRELLEGAEDLNNAIVFCNR---KRDISTLFRSLERHGYSVGSL-- 275
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H +DQ TR+ + F K L+ +D A+RG+D V HV +D P +YV
Sbjct: 276 HGDMDQRTRMTMLDNFKKGTIK----LLIASDVAARGLDIPEVSHVFNYDVPSHAEDYVH 331
Query: 625 RVGRTARGAGGTGKAFIFVVG 645
R+GRT R AG TG A+ V G
Sbjct: 332 RIGRTGR-AGRTGVAYTLVSG 351
>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium extorquens CM4]
gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
CM4]
Length = 510
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 192/405 (47%), Gaps = 34/405 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++ +L+ ++ P+ IQA A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L + + + RV++L+PT ELASQ+ S S G +P+ + VV GG
Sbjct: 64 LSLDSRRAPRRGC----RVLVLSPTRELASQIAD---SFSDYGRHLPYTNTVVFGGVNIT 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 117 RQERAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQML-DLGFIHALKRIVK 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P I + + V + + +++ ++ C
Sbjct: 176 MLPAKRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFC-------- 227
Query: 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K ALL + + P + + +VF T + +++ D+ V H
Sbjct: 228 -----HTGAKQALLNHVLRDPKIERVLVFTR---TKHGADRVVRGLDKAS--VVSAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F R R+ LV TD A+RGID GV HVV +D P P YV R+
Sbjct: 278 NKSQPQRERALAAF---RDGSCRV-LVATDIAARGIDVDGVTHVVNYDLPNVPESYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
GRTAR AG G+A F ++ + + I R+ P+ P F
Sbjct: 334 GRTAR-AGAEGQAISFCNDEERAYLRDIERTTRQKIPVGGFPEGF 377
>gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 549
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 188/404 (46%), Gaps = 47/404 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL ++ ++++ N+ + IQ A PPV++GK Q+G+GKT A+++PV++R
Sbjct: 3 FSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVMER 62
Query: 330 -LRQEELQG-------------LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
LR +QG K V+IL PT ELA QV N LS
Sbjct: 63 ILRARPIQGEVTEEQKALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLS-VDSGL 121
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
R + GG Q E L+ GV+ ++ATPGR + L KE ++ L +R + DE D +F D
Sbjct: 122 RGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMF-D 180
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
F+ ++ ++ P Q L +ATL ++ N + + G E
Sbjct: 181 MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQF-----------------GSEPV 223
Query: 496 LVDCSGDQ-ESDKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK 550
++ S DQ ++D + F K LL L++ + I+F N ++ ++ L
Sbjct: 224 EINISRDQAKADNVKDQIFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFL- 282
Query: 551 RFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHV 610
E V + + L Q R +++F LV TD A+RG+D GVD V
Sbjct: 283 ----VENGVPAMAISSLLTQAQRNRVIEQFKAENDMNV---LVATDVAARGLDIKGVDMV 335
Query: 611 VLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V ++ P D YV R+GRT R AG TG+AF V K + RI
Sbjct: 336 VNYELPMDSESYVHRIGRTGR-AGTTGQAFSLVGDKDIESLGRI 378
>gi|407067967|ref|ZP_11098805.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 538
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/409 (31%), Positives = 200/409 (48%), Gaps = 62/409 (15%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++++++ Q + +PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 ------RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVV 380
R+RQ ++ R ++L PT ELA+QV S+ K G+ P S VV
Sbjct: 62 MLSKGPRVRQNQV-----------RALVLTPTRELAAQVNG---SVVKYGINLPLTSTVV 107
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG + Q++ L++G DVL+ATPGR + L + ++ L +LDE D + D F
Sbjct: 108 FGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRML-DMGFIR 166
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ +++ P Q L +AT +I + L + +V P +SP
Sbjct: 167 DIRKILAFLPKKRQNLLFSATFSDDIRS-LAK-----GLVNNPVEISVSPA--------- 211
Query: 501 GDQESDKTPETAFL----NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
+ KT E + KKSA+L +LI+ + + +VF + N L RF +
Sbjct: 212 --NSTAKTVEQSIYPVDKKKKSAMLAKLIKDNDWRQVLVFSK----TKHGANKLARF-LE 264
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
E + P H Q R ++ F T + + LV TD A+RGID + VV FD
Sbjct: 265 EQDITAAPIHGNKSQGARTKALENFKTGKVR----VLVATDIAARGIDIPQLPQVVNFDL 320
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS-------LAQRIMER 657
P +YV R+GRT R AG GKA V +V L Q+++ER
Sbjct: 321 PHVSEDYVHRIGRTGR-AGEVGKAISLVCADEVGELFGIERLIQQVLER 368
>gi|386845370|ref|YP_006263383.1| DEAD/DEAH box helicase [Actinoplanes sp. SE50/110]
gi|359832874|gb|AEV81315.1| DEAD/DEAH box helicase domain-containing protein [Actinoplanes sp.
SE50/110]
Length = 659
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 45/396 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ L R+ P +IQA P + G+ + Q+GSGKTLA+ LPV+
Sbjct: 93 TFADLGLPAEIVRVLTREGITTPFEIQAATVPDALAGRDVLGRGQTGSGKTLAFGLPVLA 152
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQK 387
R Q K+ P+ +IL PT ELA QV + + + GV ++ V GG
Sbjct: 153 RTAQG-----GKARPHHPKALILVPTRELAMQVADSLMPVGRAVGVFLKTAV--GGVPYD 205
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GV+V++ATPGR LI+ G +L ++ +LDE D + D F + L+S
Sbjct: 206 RQMDALRRGVEVIVATPGRLADLIERGACKLDDVEITVLDEADQM-ADMGFLPEVTDLLS 264
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSG 501
+P AQ L +ATL ++ + LV+ F + P H +P ++ L+
Sbjct: 265 KTPENAQRLLFSATLDGDV-DALVQRF-----MHDPVTHSTAPAEASVSTMDHHLLLIP- 317
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
++K P T+++ ++ KTIVF T V+ ++++ VR
Sbjct: 318 --PAEKFPITSWIANRAG-----------KTIVFAR---TQMGVDRLVEQL--HAVGVRA 359
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H Q R + EF R+ LV TD A+RGI GV VV D P+DP +
Sbjct: 360 GALHGGKTQRVRTRTLAEFKEGRTN----VLVATDVAARGIHVDGVSLVVHVDPPKDPKD 415
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
Y+ R GRTAR AG +G V+ KQ Q++M +
Sbjct: 416 YLHRAGRTAR-AGESGAVVTLVLPKQRRTTQQMMAK 450
>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase [Candidatus Solibacter usitatus Ellin6076]
gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 422
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 185/375 (49%), Gaps = 36/375 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S + +L + NF P+ IQ++A P + GK + Q+G+GKTLA+LLP IQ
Sbjct: 3 NFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQ 62
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q G+ R +IL PT ELA Q+ +++ G R+ V GG ++
Sbjct: 63 LLSTEPRQPGV--------RALILTPTRELALQINEALLQIAR-GTGIRAAVAVGGLNER 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL +++ G ++++ATPGR + G++ L +R ILDE D + D F ++ +I+
Sbjct: 114 SQLRDIRGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRML-DMGFLPTIKRIIA 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESD 506
+ P Q L +ATL + +LVE V + G + + S ++ L + D
Sbjct: 173 AMPAERQTLLFSATLESSV-KQLVETHVRNAVRIELGSISKPSEQVDLHLYEVDQD---- 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+K LL+++ + +VF T + + K+ ++ + H
Sbjct: 228 ---------RKFGLLEMMLREEQGSFLVFAR---TKHGADKLAKKL--AQSGFKSAAIHG 273
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ +K F + LV TD A+RGI G+ HVV FD P+ P +++ RV
Sbjct: 274 DRSQNQRIQALKGFQEGYYR----VLVATDVAARGIHVEGISHVVNFDLPQVPEDFIHRV 329
Query: 627 GRTAR-GAGGTGKAF 640
GRT R GA GT F
Sbjct: 330 GRTGRAGAKGTASTF 344
>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 458
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/386 (29%), Positives = 186/386 (48%), Gaps = 29/386 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + S+K +L P+ IQA+ P V++GK + + Q+G+GKT A++LP+I+
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR E+ K ++L PT ELA+QV ++ ++ +K + RS V GG +
Sbjct: 85 LLRAED-----KPKRYQVHSLVLTPTRELAAQVEASAKAYTKY-LALRSDAVFGGVSIRP 138
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ GVD+L+ATPGR + LI + +++ NL+ +LDE D + D F ++ +I
Sbjct: 139 QVKRLQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRML-DMGFIRDIKKVIEY 197
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT I + + D + ++ +P +E + C ++ D
Sbjct: 198 LPKNRQNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVD-- 255
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L LI+ + + +VF KV IL +R H
Sbjct: 256 ----------LLCHLIKTNKWKQVLVFARTKHGADKVVKIL-----CHQHMRASAIHGNK 300
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F K LV TD A+RGID + +V+ D P +YV R+GR
Sbjct: 301 SQGARTRALEGFKNGDIK----ILVATDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGR 356
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G A V ++ L + I
Sbjct: 357 TGR-AGEAGHAISLVAAEEALLLKAI 381
>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 568
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 185/375 (49%), Gaps = 25/375 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + S+ R ++L PT ELA+QV + R+ K + +S V+ GG
Sbjct: 62 RLAQGQAP-TSRFGGRGVRALVLTPTRELAAQVEESVRAYGKH-LDIKSTVIFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+ATPGR + L ++G + L + +LDE D + D F ++ +++
Sbjct: 120 QIERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D + + +++P + + + S
Sbjct: 179 LPKAKQSLLFSATFSDEIRELAAGLLNDPQSI------QVTP------RNTTVQRISQVI 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KK LL +I++ S+ +VF V L + V+ + H
Sbjct: 227 HPVGRGKKKQVLLHIIQQHDWSQVLVFTRTKFGANNVAEYLTKHG-----VQAMALHGNK 281
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F + + + LV TD A+RGID + HVV ++ P P +YV R+GR
Sbjct: 282 SQSARTQALEGFKSGQIRA----LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGR 337
Query: 629 TARGAGGTGKAFIFV 643
T R AG G+A V
Sbjct: 338 TGR-AGKEGQAVSLV 351
>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
SS14]
gi|408502625|ref|YP_006870069.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum str. Mexico A]
gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
SS14]
gi|408475988|gb|AFU66753.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum str. Mexico A]
Length = 649
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SF+ELG ++ + +++ + F P+ IQA A P ++ G + I+A ++G+GKT A+ LP+I
Sbjct: 47 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L S P ++L PT ELA+QV S SL +P R V GG
Sbjct: 107 QEL---------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIP-RIHTVYGGVSIA 156
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL NL++G ++++ T GR + I+ G L+L LR ILDE D + N F ++S+ S
Sbjct: 157 EQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN-MGFVEDIESIFS 215
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + +VV P +E+F+ +++DK
Sbjct: 216 HANKDARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV---RDADK 272
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
AL++LI+ S +VFC T + + K D + V L H
Sbjct: 273 I---------EALVRLIDVSDNFYGLVFCQ---TKADADTVAKSLDERHYHVAAL--HGD 318
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F T R++ LV TD A+RGID G+ HVV + P D + Y RVG
Sbjct: 319 IPQSQREKILERFRTKRAR----ILVATDVAARGIDIEGITHVVNYSIPHDSATYTHRVG 374
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 375 RTGR-AGSQGIAISFV 389
>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
Nichols]
gi|378975404|ref|YP_005224014.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum DAL-1]
gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
Nichols]
gi|374680804|gb|AEZ61094.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pallidum DAL-1]
Length = 649
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SF+ELG ++ + +++ + F P+ IQA A P ++ G + I+A ++G+GKT A+ LP+I
Sbjct: 47 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L S P ++L PT ELA+QV S SL +P R V GG
Sbjct: 107 QEL---------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIP-RIHTVYGGVSIA 156
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL NL++G ++++ T GR + I+ G L+L LR ILDE D + N F ++S+ S
Sbjct: 157 EQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN-MGFVEDIESIFS 215
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + +VV P +E+F+ +++DK
Sbjct: 216 HANKDARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV---RDADK 272
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
AL++LI+ S +VFC T + + K D + V L H
Sbjct: 273 I---------EALVRLIDVSDNFYGLVFCQ---TKADADTVAKSLDERHYHVAAL--HGD 318
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F T R++ LV TD A+RGID G+ HVV + P D + Y RVG
Sbjct: 319 IPQSQREKILERFRTKRAR----ILVATDVAARGIDIEGITHVVNYSIPHDSATYTHRVG 374
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 375 RTGR-AGSQGIAISFV 389
>gi|444318435|ref|XP_004179875.1| hypothetical protein TBLA_0C05580 [Tetrapisispora blattae CBS 6284]
gi|387512916|emb|CCH60356.1| hypothetical protein TBLA_0C05580 [Tetrapisispora blattae CBS 6284]
Length = 540
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 184/392 (46%), Gaps = 34/392 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY++ +K + F P+ IQ +P + G+ + +GSGKTL+Y LP I
Sbjct: 114 NFDEAGFPDYVLNEVKAEGFANPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++L+PT ELA Q+ C K R+ V GG +
Sbjct: 174 HINAQPLL----APGDGPIVLVLSPTRELAVQIQKECSKFGKSSR-IRNTCVYGGVPKGQ 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G +++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 229 QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 287
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG----PGMHRISPGLEEFLVDCSGDQ 503
Q L +AT P E+ N + D +V +G H I+ L E + D
Sbjct: 288 IRPDRQTLMWSATWPKEVQNLARDYLNDPIQVQIGSLELAASHTITQ-LVEVITDFEKRD 346
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K E A +K+S +L VF + TC ++ L +E L
Sbjct: 347 RMVKHLEVASQDKESKIL------------VFASTKRTCDEITKYL-----REDGWPALA 389
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H DQ R + EF RS +V TD A+RGID G+++V+ +D P + +YV
Sbjct: 390 IHGDKDQRERDWVLAEFREGRSP----IMVATDVAARGIDVKGINYVINYDMPGNIEDYV 445
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
R+GRT R AG TG A F + SL ++
Sbjct: 446 HRIGRTGR-AGATGTAISFFTEENKSLGASLI 476
>gi|115762569|ref|XP_792708.2| PREDICTED: ATP-dependent RNA helicase DDX54-like
[Strongylocentrotus purpuratus]
Length = 889
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 198/413 (47%), Gaps = 58/413 (14%)
Query: 258 YSADGDFFSRK-------------SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE 304
YS+D D +R F+ +G S + + + ++ + P+ IQ P ++E
Sbjct: 50 YSSDADIDTRALVKQQNRKKKKSGGFQSMGLSHAVFKGIMKKGYKIPTPIQRKCIPIIME 109
Query: 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364
G+ + ++GSGKT A+LLP+++RL++ +S R +IL+PT ELA Q L
Sbjct: 110 GQDVVGMARTGSGKTAAFLLPMLERLQR-------RSAQSGARALILSPTRELALQTLKF 162
Query: 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424
+ L++ RS V+ GG R Q L E D+LIAT GR + ++ E L+L+ +
Sbjct: 163 TKELARY-TDLRSEVILGGDRMDDQFAALHENPDILIATRGRLLHVLVEMDLKLMQVEYV 221
Query: 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
+ DE D LF + F L ++S P Q L +ATLP LVE
Sbjct: 222 VFDEADRLF-EMGFAEQLNEILSRLPDNRQTLLFSATLP----KSLVEF----------- 265
Query: 485 MHRISPGLEE-FLVDCSGDQESDKTPETAFL-----NKKSALLQLIEK--SPVSKTIVFC 536
S GL E LV + + + ++ FL +K + LL L+ P T+VF
Sbjct: 266 ---ASAGLSEPVLVRLDVESKISEQLKSMFLYTRSNDKTAVLLHLLRDVIQPNQLTVVFL 322
Query: 537 NKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTD 596
V +L++ T + ++ALDQ R N+ +FT ++ L+ TD
Sbjct: 323 ATRHHVDYVRELLEQAGISNTYI-----YSALDQAARKINVAKFTHKKTH----ILLVTD 373
Query: 597 RASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649
A+RGID +D V+ F FP P +V RVGR AR AG TG A+ V ++S
Sbjct: 374 IAARGIDIPMLDVVINFHFPGKPKLFVHRVGRVAR-AGRTGTAYSMVAPDELS 425
>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
Length = 510
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 192/405 (47%), Gaps = 34/405 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++ +L+ ++ P+ IQA A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L + + + RV++L+PT ELASQ+ S S G +P+ + VV GG
Sbjct: 64 LSLDSRRAPRRGC----RVLVLSPTRELASQIAD---SFSDYGRHLPYTNTVVFGGVNIT 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 117 RQERAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQML-DLGFIHALKRIVK 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P I + + V + + +++ ++ C
Sbjct: 176 MLPAKRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFC-------- 227
Query: 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K ALL + + P + + +VF T + +++ D+ V H
Sbjct: 228 -----HTGAKQALLNHVLRDPKIERVLVFTR---TKHGADRVVRGLDKAN--VVSAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F R R+ LV TD A+RGID GV HVV +D P P YV R+
Sbjct: 278 NKSQPQRERALAAF---RDGSCRV-LVATDIAARGIDVDGVTHVVNYDLPNVPESYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
GRTAR AG G+A F ++ + + I R+ P+ P F
Sbjct: 334 GRTAR-AGAEGQAISFCNDEERAYLRDIERTTRQKIPVGGFPEGF 377
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 189/384 (49%), Gaps = 43/384 (11%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ F + G S +++ +L Q ++ P+ IQA A P +++G+ + A Q+G+GKT + LP
Sbjct: 63 SQVRFADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALP 122
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQ L STS SP R +IL PT ELA QV N ++ ++ P RS VV
Sbjct: 123 IIQMLLAH------ASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQH-TPLRSTVV 175
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG K Q L+ GV+++IATPGR + +++ + L ++ ++DE D + D F
Sbjct: 176 FGGMDMKGQTVILKAGVEIVIATPGRLLDHVEQKNISLGQVQMLVMDEADRML-DMGFLP 234
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +I+ P Q L +AT EI KL F V +
Sbjct: 235 DLQRIINLLPAKRQNLMFSATFSPEI-KKLANTFLTNPVT---------------IEVAR 278
Query: 501 GDQESDKTPETAFL---NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
+Q +DK + + N+K AL L+ + + + I+F N + ++ L ++
Sbjct: 279 SNQTADKVTQVVYKVPENQKHALTAHLLRQRELKQVIIFSNTKIGASRLAKGL-----EQ 333
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
++ + H Q+ R+A ++ F LV TD A+RG+D + V+ +D P
Sbjct: 334 EGMKAVAIHGDKTQQERMAALESFKKGEID----ILVATDVAARGLDITDLPCVINYDLP 389
Query: 617 RDPSEYVRRVGRTARGAGGTGKAF 640
+ +YV R+GRT R AG +G A
Sbjct: 390 YNAEDYVHRIGRTGR-AGASGDAL 412
>gi|398379083|ref|ZP_10537228.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397723550|gb|EJK84044.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 580
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 124/386 (32%), Positives = 183/386 (47%), Gaps = 29/386 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 46 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ + + + R +ILAPT EL +Q+ N + + R VV GG Q
Sbjct: 106 L----LKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRK-TALRINVVVGGASINKQ 160
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ G D+L+ATPGR + LI L L + +LDE D + D F L+ +
Sbjct: 161 QLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQML-DLGFIHDLRKISKMV 219
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT+P I + E + KV + P + + +E+++ SG
Sbjct: 220 PAKRQTMLFSATMPKTIADLAAEYLTNPVKVEVSP-PGKAADKVEQYVHFVSGQN----- 273
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K L + I +P + +VF T E ++K + H
Sbjct: 274 ------HKTEILKESISANPDGRAMVFLR---TKHGAEKLMKHLE--HVGFAAASIHGNK 322
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+GR
Sbjct: 323 SQGQRERALKGF---RDGEVRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGR 378
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
TAR AG G A F + L + I
Sbjct: 379 TAR-AGRDGIAIAFCAPDEARLLRDI 403
>gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase [Sphingomonas wittichii RW1]
gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
Length = 448
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 174/360 (48%), Gaps = 31/360 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++ ++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 SFADLGLSDELLRAVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 62 ILAH------GRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLI-GGVNMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QVAALEKGVDVLIATPGRLMDLFGRGKILLTGCSLLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDK 507
P Q L +AT+P I KL + F + P +S P +D S
Sbjct: 174 LPAQRQTLLFSATMPAPI-KKLADKF-----LSNPKQIEVSRPASTNLAIDQS------- 220
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
ET+ K+ L L+ VS I+F N+ T R + L R+ + ++ H
Sbjct: 221 LVETSSRAKRETLRGLLNGGDVSTAIIFSNRKTTVRDLAQSLGRYGFRAGQI-----HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
++Q RL + F LV +D A+RG+D GV HV+ FD P P +YV RVG
Sbjct: 276 MEQPERLRELDRFKGGEIN----ILVASDVAARGLDIKGVSHVINFDVPWHPDDYVHRVG 331
>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase [Methylobacterium extorquens PA1]
gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
PA1]
gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
Length = 510
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 192/405 (47%), Gaps = 34/405 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++ +L+ ++ P+ IQA A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L + + + RV++L+PT ELASQ+ S S G +P+ + VV GG
Sbjct: 64 LSLDSRRAPRRGC----RVLVLSPTRELASQIAD---SFSDYGRHLPYTNTVVFGGVNIT 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 117 RQERAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQML-DLGFIHALKRIVK 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P I + + V + + +++ ++ C
Sbjct: 176 MLPAKRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFC-------- 227
Query: 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K ALL + + P + + +VF T + +++ D+ V H
Sbjct: 228 -----HTGAKQALLNHVLRDPKIERVLVFTR---TKHGADRVVRGLDKAS--VVSAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F R R+ LV TD A+RGID GV HVV +D P P YV R+
Sbjct: 278 NKSQPQRERALAAF---RDGSCRV-LVATDIAARGIDVDGVTHVVNYDLPNVPESYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
GRTAR AG G+A F ++ + + I R+ P+ P F
Sbjct: 334 GRTAR-AGAEGQAISFCNDEERAYLRDIERTTRQKIPVGGFPEGF 377
>gi|34541680|ref|NP_906159.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W83]
gi|419970031|ref|ZP_14485545.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W50]
gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
gingivalis W83]
gi|392611718|gb|EIW94447.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W50]
Length = 427
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 184/389 (47%), Gaps = 35/389 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D +++ L NF+ + +QA PP++EG+ I Q+G+GKT AYLLP++ R
Sbjct: 3 FDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG---GFRQ 386
L E S VI+APT ELA Q+ S +P ++ + G G
Sbjct: 63 LSAGEF------ASDVVNAVIMAPTRELAQQIDQQVEGFSYF-MPVSAVAIYGGTDGVAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q + G D++IATPGR + + G L ++ +LDE D + + F+ +Q +
Sbjct: 116 EQQRRGMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQ-IY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P + Q + +AT+P +I + D +V + IS E + E+
Sbjct: 175 KQLPSSCQTVMFSATMPPKIRKLAASILRDPIEVEIA-----ISRPPESIMQSAYICHEA 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K P L +L E+S +TI+F + + R++ + L++ V H
Sbjct: 230 QKLP---------ILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMG-----FNVADMH 275
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ L+Q R M++F LV TD +RGID + V+ +D P DP +YV R
Sbjct: 276 SDLEQSQREQVMRDFKNGYVD----VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHR 331
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRTARG G G A FV ++ S +I
Sbjct: 332 IGRTARGTNGEGLAITFVSEEEQSDFHKI 360
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 205/416 (49%), Gaps = 52/416 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S +++++ +Q + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 TFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G +++ R +IL PT ELA+QV + + K + +S VV GG +
Sbjct: 62 RLSKGKPAGPNQA-----RALILTPTRELAAQVSDSVETYGKQ-LSLKSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L + ++ L +LDE D + D F ++ ++ +
Sbjct: 116 QMMRLRKGVDILVATPGRLLDLFNQNAIKFDQLEILVLDEADRML-DMGFIHDIKRILKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS-GDQESDK 507
P Q L +AT EI +++ GL V+ S + +
Sbjct: 175 LPKNRQNLLFSATFSNEI-------------------RQLAKGLVNNPVEISVTPRNTTA 215
Query: 508 TPETAFL-----NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
T T ++ +K+ALL +LI+++ S+ ++F T + K+ + K ++
Sbjct: 216 TTVTQWIYPVDKGRKAALLTKLIKENDWSQVLIFSR---TKHGANRLTKQLEGKG--IKA 270
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H Q R + F + LV TD A+RGID + HVV FD P +
Sbjct: 271 AAIHGNKSQGARTKALASFKDGTVQA----LVATDIAARGIDIDQLPHVVNFDLPNVAED 326
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMERN--RKGHPLHDVP 668
YV R+GRT R AG G+A V +V +L Q+++ R P +DVP
Sbjct: 327 YVHRIGRTGR-AGAVGEAVSLVSADEVKELAGIENLIQKLLPRKIIDGFEPTNDVP 381
>gi|418063733|ref|ZP_12701365.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373557184|gb|EHP83654.1| DEAD/DEAH box helicase domain protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 453
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 182/381 (47%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFADLGLSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 MLET------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALIIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L G DVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L ++F P V P + +E+ LV +
Sbjct: 172 KMVPFTRQTLFFSATMPPEI-ERLADMFLHNPQRVEVARPA--STATTIEQRLVATGAEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L LI S + I+FCN+ +++ L
Sbjct: 229 H----------EKRKVLRHLIRSASELQNGIIFCNRKRDVAQLQRSLTSHG-----FNAA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R+A + F RS E L LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQRARMAALDGF---RSGEVPL-LVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
V R+GRT R AG +G+AF
Sbjct: 330 VHRIGRTGR-AGRSGQAFTLA 349
>gi|423687836|ref|ZP_17662639.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
gi|371493024|gb|EHN68628.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
Length = 445
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 36/379 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG + ++++L QN +P++IQ A P + GK + + ++GSGKTLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLH- 61
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + SK+ PR VILAPT ELA QV S+ R++ G+ + + ++TGG Q
Sbjct: 62 -KSLKTKSFSKN---DPRAVILAPTRELAKQVYSHLRAML-GGLTYDATLITGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI-SS 448
+ L++ ++ATPGR ++ L L L ILDE D + D F LQ + ++
Sbjct: 117 VNALRKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRML-DLGFAEHLQKIHKAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
S Q L +ATL + NK D P RIS GL S D+ D T
Sbjct: 176 SHRRRQTLMFSATLDHDAVNKFAGNMLD-----NPK--RISVGL-------SNDEHKDIT 221
Query: 509 PETAF---LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
L+ K A+L ++IE + ++F ++ +L E ++ +
Sbjct: 222 QRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRLTKLL-----NEENLKAVAL 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q R M +F + LV TD ASRG+D V HV+ FD P+ EYV
Sbjct: 277 SGDMNQTARNNIMSQF----ERRVHKILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVH 332
Query: 625 RVGRTARGAGGTGKAFIFV 643
RVGRT R AG G A V
Sbjct: 333 RVGRTGR-AGKKGTAISLV 350
>gi|365538577|ref|ZP_09363752.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 412
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 182/375 (48%), Gaps = 31/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG SD +++++ + P+ IQ A P ++ GK+ I A Q+G+GKT +++LP++Q
Sbjct: 3 FSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPILQM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q Q + R +ILAPT ELA QV N +K +P S+ + GG + Q
Sbjct: 63 LSQGTTQRAKRV-----RALILAPTRELALQVEENITQYAKY-LPLTSLAMYGGVDSQKQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVD+LIATPGR + + + + L ++DE D + D F + ++
Sbjct: 117 KQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRML-DMGFIEDINKIVDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P+ Q L +ATL + D + G +R +E++++ DQ
Sbjct: 176 PLNRQNLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWIITVDKDQ------ 229
Query: 510 ETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KSALL LI ++ + ++F K+ + L++ + FH+
Sbjct: 230 -------KSALLSHLITENQWQQAMIFIETKHGAAKLASQLEK-----RGIAAEAFHSGR 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
QE R + +F + + FL+ T A+RGID ++ VV +D P Y+ R+GR
Sbjct: 278 SQEVREKLLADFKAGKLQ----FLIATGVAARGIDIDNLERVVNYDLPYPAENYIHRIGR 333
Query: 629 TARGAGGTGKAFIFV 643
T R AG TG+A V
Sbjct: 334 TGR-AGATGEAISLV 347
>gi|357634253|ref|ZP_09132131.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
gi|357582807|gb|EHJ48140.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
Length = 492
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 129/404 (31%), Positives = 188/404 (46%), Gaps = 32/404 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF + E++KR + P+ IQA A P V EG+ + Q+G+GKT A+LLP+I
Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +KS R +ILAPT ELA Q+ L + G R+ V+ GG
Sbjct: 62 RLM------TTKSEKRGVRALILAPTRELAEQIYRAGLDLGR-GTRLRAAVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+++A PGR + + +G ++ L +LDE D +F D F ++ ++S+
Sbjct: 115 QTRALRQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMF-DMGFLPDIKRILSA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I E D V M +S +E + S Q
Sbjct: 174 LPSERQTLLFSATMPPAISGLAHETLTDPVTVRIGHMAPLST-VEHAIYPISHTQ----- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K LL L+E++ IVF T + +N+ + R + L L
Sbjct: 228 -------KAPLLLHLLEEAGKQSVIVFTR---TKHRAKNLALQLCRSGHKATCL--QGNL 275
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R M F + + LV TD A+RGID + V HVV FD P Y R+GR
Sbjct: 276 SQRQRQIAMDGF----RRGSFQVLVATDIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGR 331
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
T R A G+A FV G+ + + + I +K P +V FE
Sbjct: 332 TGR-AEHEGQAHTFVTGEDMGMVRAIESHMKKPLPRREV-EGFE 373
>gi|365840060|ref|ZP_09381274.1| DEAD-box ATP-dependent RNA helicase CshA, partial [Anaeroglobus
geminatus F0357]
gi|364562799|gb|EHM40631.1| DEAD-box ATP-dependent RNA helicase CshA, partial [Anaeroglobus
geminatus F0357]
Length = 475
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/386 (30%), Positives = 195/386 (50%), Gaps = 31/386 (8%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+ + + FK L SD +I +L F P+ IQ + P +EG I Q+G+GKT AY
Sbjct: 19 EVYMLEKFKNLNISDVIINALNEMGFEEPTPIQGESIPVAMEGHDMIGQAQTGTGKTAAY 78
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+P ++++ L+ + V+L+PT ELA QV L++ P +++ + G
Sbjct: 79 GIPALEKI-------LAAGIPKELQAVVLSPTRELAIQVAEEINHLAQY-TPIQALPIYG 130
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + QL L++ +++ATPGR + +K G ++L N+ +LDE D + N F +
Sbjct: 131 GQDIERQLRRLRKAPQIIVATPGRLIDHMKRGTIKLNNISTIVLDEADEMLN-MGFIDDI 189
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
++S++P T Q L +AT+P I KL E F + P + R+ +E +D
Sbjct: 190 NLIMSATPETRQTLLFSATMPAPI-QKLAETF-----LHEPQIIRMKT--KEVTIDLV-- 239
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
E A K L +L++ I+F T R+V+ + + ++
Sbjct: 240 --EQAYIEVADRQKFDVLCRLLDLQEPELAIIFVR---TKRRVDELSEGLKKRGYSSE-- 292
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H L Q R + +++F R K + LV TD A+RG+D +GV HV +D P+DP Y
Sbjct: 293 GIHGDLTQAKRDSVIRQF---REKTIDI-LVATDVAARGLDISGVTHVFNYDLPQDPESY 348
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQV 648
V RVGRT R AG +G+A FV+ +++
Sbjct: 349 VHRVGRTGR-AGKSGEATTFVIPREI 373
>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 506
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 191/403 (47%), Gaps = 28/403 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++++L ++ P+ IQA A PP + G+ Q+G+GKT A+ LP++ R
Sbjct: 4 FVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E ++ RV++L+PT ELASQ+ + R K +PF + VV GG Q
Sbjct: 64 LASETPA--KRAPRRGCRVLVLSPTRELASQIADSFRDYGKF-LPFSTTVVFGGVTIGRQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L G+DVL+ATPGR + L+ L L ++ +LDE D + D F AL+ +++
Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQML-DLGFIHALKRIVTLL 179
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P I + D +V + P V + ++ +
Sbjct: 180 PKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTP-------------VATTAERVEQRV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ K++ L ++ + + +VF +V L++ + H
Sbjct: 227 IHVSTGAKQALLGTILRDESIDRVLVFTRTKHGADRVVRGLEKVG-----IGSAAIHGNK 281
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F R+ R+ LV TD A+RGID GV HVV FD P P YV R+GR
Sbjct: 282 SQPQRERALAAF---RAGTCRV-LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGR 337
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
TAR AG G A F ++ + + I R+ P +P F
Sbjct: 338 TAR-AGADGLAISFCNEEERAYLRDIERLTRQKVPEMAIPVGF 379
>gi|384532968|ref|YP_005715632.1| DEAD/DEAH box helicase [Sinorhizobium meliloti BL225C]
gi|333815144|gb|AEG07811.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
BL225C]
Length = 504
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 125/392 (31%), Positives = 185/392 (47%), Gaps = 39/392 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L GVD+L+ATPGR + L+ + L R +LDE D + D F L+ +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQML-DLGFIHDLRKISKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I E D KV + P PG + +DK
Sbjct: 177 VPKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSP------PG-----------KAADK 219
Query: 508 TPETAFLN-----KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ K + L Q + +P +++F T E ++K D +
Sbjct: 220 VEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSR---TKHGAEKLMKHLD--HVGFKAA 274
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R +K F R E R+ LV TD A+RGID GV HV +D P P Y
Sbjct: 275 SIHGNKSQGQRERALKAF---RDGEIRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAY 330
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRTAR G G A F ++ L + I
Sbjct: 331 VHRIGRTARN-GRDGIAIAFCAPDEIRLLRDI 361
>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
Length = 515
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/418 (28%), Positives = 201/418 (48%), Gaps = 38/418 (9%)
Query: 235 WRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR-----KSFKELGCSDYMIESLKRQNFL 289
W+ + +L + +QR K + +G + +SF E+ ++ ++ +
Sbjct: 75 WQPTSRVLSLSDDTIAEIRQRLKVTVEGTEDDKAASPIESFAEMNLHPNIVADIQHHKYE 134
Query: 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR-LRQEELQGLSKSTSGSPRV 348
P+ IQA P + G+ + ++GSGKT ++ +P+IQ L Q+ L+ P
Sbjct: 135 TPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQHCLNQQPLR-----AGDGPMA 189
Query: 349 VILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF 407
++LAPT ELA Q+ ++ S+ G R+ +V GG Q +L+ GV+V++ATPGRF
Sbjct: 190 LVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHDLRNGVEVVVATPGRF 249
Query: 408 MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467
+ +++G L + +LDE D + D FE ++ ++++ P Q L +AT+P EI
Sbjct: 250 IDHLQQGNTNLGRISYVVLDEADRML-DMGFEPQIKEVMNNLPPKHQTLLFSATMPKEI- 307
Query: 468 NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS 527
+L + + V + G + + S Q + PE L+ AL+ +
Sbjct: 308 EELARAYLNKPVTVKIG------AVSTPTANVS--QRLEHAPEPQKLDILVALISAEVAA 359
Query: 528 ------PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
P+ TIVF + C +V L+ E + H L+Q R A +++F
Sbjct: 360 EAAGGPPMPLTIVFVERKTRCDEVAAALR-----EDGINANALHGGLNQNEREAALRDFA 414
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKA 639
K LV TD ASRG+D G+ HV+ D P+ +YV R+GRT R AG G+A
Sbjct: 415 KGDIK----VLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGR-AGTKGRA 467
>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
Length = 622
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 190/388 (48%), Gaps = 20/388 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++ +++ + + RPS IQA A P + G+ + ++GSGKT A+ +P++
Sbjct: 118 ESFNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPML 177
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q L Q ++ P ++LAPT ELA Q+ ++ S+ ++ +V GG
Sbjct: 178 QHCLVQPPIR-----RGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNI 232
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ GV++ +ATPGRF+ +++G L + +LDE D + D FE ++ ++
Sbjct: 233 EKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRML-DMGFEPQIREIM 291
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q L +AT+PVEI E + V + + + + LV SG ++ D
Sbjct: 292 RSLPEKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSEKID 351
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ + + + S + + P+ TIVF + C +V L + + H
Sbjct: 352 RLLDL-LVEEASQAEKCGHRFPL--TIVFVERKTRCDEVAEAL-----VAQGLSAVSLHG 403
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R A ++ F +S + LV TD ASRG+D GV HV+ D P+ +Y+ R+
Sbjct: 404 GHSQNEREAALQNFRSSSTS----ILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRI 459
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRT R AG TG A F + + L I
Sbjct: 460 GRTGR-AGSTGIATSFYTDRDMFLVTNI 486
>gi|295671282|ref|XP_002796188.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284321|gb|EEH39887.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 543
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 203/435 (46%), Gaps = 68/435 (15%)
Query: 255 RHKYSADGDFFSRK------------SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
+ K SAD D + K SF LG + +++ SL RP+ IQ P +
Sbjct: 88 QKKQSADADPITVKDALATKTPSDGSSFATLGLAPWLVGSLSAMAIKRPTAIQKACIPEI 147
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++G+ CI ++GSGKT+A+ P++Q+ ++ L + V+L PT ELA Q+
Sbjct: 148 LKGRDCIGGSRTGSGKTVAFAAPILQKWSEDPLGIFA---------VVLTPTRELALQIF 198
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI----KEGILQL 418
+++S + +++TGG + Q L + V+IATPGR I ++ I L
Sbjct: 199 EQIKAIS-APQSLKPILITGGTEMRPQAIALSQRPHVVIATPGRLADHINSSGRDTICGL 257
Query: 419 INLRCAILDEVDILFND------EDFEVALQSLISSSPVTA-QYLFVTATLPVEIYNKLV 471
R +LDE D L D E L +L P TA Q L TAT
Sbjct: 258 NRARFVVLDEADRLLESGPGSMLPDLETCLSAL---PPSTARQTLLFTAT---------- 304
Query: 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD--KTPETAF----LNKKSALLQLI- 524
V P+ + + M R + F+ + S + ++ +T + ++ L + A L ++
Sbjct: 305 -VTPEVRALK--SMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPLTHREAFLHVLL 361
Query: 525 --EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
E + I+FCN+ T +E +L+R + T H+ L Q R AN+ F
Sbjct: 362 STEGNSSKAAIIFCNRTKTADLLERMLRRLGHRATS-----LHSLLPQSERTANLSRFRA 416
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642
S A LV TD A+RG+D V V+ FD PR+P +YV RVGRTAR AG G+A
Sbjct: 417 S----AAPILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTAR-AGREGEAVTL 471
Query: 643 VVGKQVSLAQRIMER 657
V + V L I +R
Sbjct: 472 VGQRDVQLVLAIEDR 486
>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
SAW760]
Length = 684
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 184/379 (48%), Gaps = 30/379 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G + + + ++ + P+ IQ A P ++ G I ++GSGKT AYL+P+I R
Sbjct: 15 FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +G+ R +I+ PT ELA Q + L K ++ ++ GG + Q
Sbjct: 75 LETHSTEGV--------RSLIICPTRELALQTIKVFNELGKL-TNLKASLIIGGSKLSDQ 125
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+NL G D+++ATPGR F+++ + L + DE D++F + F + ++
Sbjct: 126 FDNLSSGPDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMF-ESGFSEQVSDIMRML 184
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q L +ATLP + L +++ R+SP L+ F +E +K
Sbjct: 185 PPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHV---KEHEKEG 241
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+L +T+VFC + +LK FD K + + F A D
Sbjct: 242 HLLYLLLDLI-------GDKEQTVVFCATRHEVEYLNEVLKIFDIKTS----MMFGKA-D 289
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ R N+K+F R +E + LV TD A+RG+D +D+V+ +DFP P Y+ R GR
Sbjct: 290 QQEREINLKKF---RKQETHVLLV-TDVAARGVDIPELDNVINYDFPATPKLYIHRCGRV 345
Query: 630 ARGAGGTGKAFIFVVGKQV 648
AR AG GK + FV +V
Sbjct: 346 AR-AGRMGKCYNFVQTDEV 363
>gi|378973279|ref|YP_005221885.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|378974346|ref|YP_005222954.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. Gauthier]
gi|378982255|ref|YP_005230562.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374677604|gb|AEZ57897.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. SamoaD]
gi|374678674|gb|AEZ58966.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. CDC2]
gi|374679743|gb|AEZ60034.1| putative ATP-dependent RNA helicase [Treponema pallidum subsp.
pertenue str. Gauthier]
Length = 649
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SF+ELG ++ + +++ + F P+ IQA A P ++ G + I+A ++G+GKT A+ LP+I
Sbjct: 47 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L S P ++L PT ELA+QV S SL +P R V GG
Sbjct: 107 QEL---------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIP-RIHTVYGGVSIA 156
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL NL++G ++++ T GR + I+ G L+L LR ILDE D + N F ++S+ S
Sbjct: 157 EQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN-MGFVEDIESIFS 215
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + +VV P +E+F+ +++DK
Sbjct: 216 HANKDARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV---RDADK 272
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
AL++LI+ S +VFC T + + K D + V L H
Sbjct: 273 I---------EALVRLIDVSDNFYGLVFCQ---TKADADTVAKSLDERHYHVAAL--HGD 318
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F T R++ LV TD A+RGID G+ HVV + P D + Y RVG
Sbjct: 319 IPQSQREKILERFRTKRAR----ILVATDVAARGIDIEGITHVVNYSIPHDSATYTHRVG 374
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 375 RTGR-AGSQGIAISFV 389
>gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
Length = 453
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/374 (32%), Positives = 190/374 (50%), Gaps = 30/374 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ + ++E++ + P+ IQ A P + G + Q+G+GKT AY+LP++ +
Sbjct: 8 FEAFKLNRQLLEAIGEAGYAHPTAIQEKAIPLALAGHDVLGIAQTGTGKTAAYVLPILMK 67
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++ QGL R +ILAPT EL Q+ + L+ R + + GG KTQ
Sbjct: 68 VKYA--QGLH------ARALILAPTRELVMQIEEVTKQLATY-TDLRVVSLYGGLGPKTQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E +Q GVD++I+TPGRF+ + ++ +L L+ +LDE D + D F ++S++
Sbjct: 119 IETIQAGVDIIISTPGRFLDIYRKNMLYTKALKTMVLDEADKMM-DMGFMPQIRSILEVI 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
PV Q L +AT I KL F + P ++P + + DQ P
Sbjct: 178 PVKRQNLLFSATFGTRI-EKLAHEFLEF-----PERVEVTP---QATTAETIDQVMYFVP 228
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K + L +L+E+ V++ I+F +V + L+ +R VRV+ HA
Sbjct: 229 NIK--TKINLLAKLLEEEAVNRAIIFTRSRKNAEEVFHFLE--NRHFGEVRVI--HANKG 282
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q TR+ +M++F + E R+ LV TD ASRG+D V HV+ FD P +YV R+GRT
Sbjct: 283 QNTRINSMEDF---KGGEVRI-LVATDVASRGLDITMVSHVINFDIPLIYEDYVHRIGRT 338
Query: 630 ARGAGGTGKAFIFV 643
R A GKA FV
Sbjct: 339 GR-AEHEGKAISFV 351
>gi|373955865|ref|ZP_09615825.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
gi|373892465|gb|EHQ28362.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 428
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 192/374 (51%), Gaps = 27/374 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ L + ++++LK + + P+ IQ + P ++E K + Q+G+GKT A+ +P++Q
Sbjct: 2 SFENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L QE++Q ++ G + +IL PT ELA Q+ + + K + +V+ GG Q
Sbjct: 62 ILYQEKVQ--NRDHKGI-KTLILTPTRELAIQIDESFAAYGKH-TGLKHLVIFGGVSQHH 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVD+L+ATPGR + L+++ + L +L+ +LDE D + D F ++ +I+
Sbjct: 118 QVEALKRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRML-DMGFVNDVKKIIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q LF +AT+P EI + D ++ P ++P V + D
Sbjct: 177 IPVKRQTLFFSATMPKEI-----QTLADT-ILNKPEKVEVTP------VSSTADTIQQGI 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+KKS L+ +++ + +VF T + ++K R + H
Sbjct: 225 YFVDKNDKKSLLIHILKDKKIETALVFTR---TKHGADKVVKDLIR--VGITAEAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + T +++ R+ LV TD A+RGID + HV+ ++ P P YV R+GR
Sbjct: 280 SQNAR---QRALTNFKNRSTRI-LVATDIAARGIDVDDLTHVINYELPNVPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
T R AG +G A F
Sbjct: 336 TGR-AGASGIALSF 348
>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
PW2]
gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
PW2]
Length = 618
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 191/381 (50%), Gaps = 26/381 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG D ++++++ ++ P+ +QA + P V+ + + A Q+G+GKT A+LLP +
Sbjct: 59 FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118
Query: 330 LRQEELQGLSKSTSG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L QG S+ ++ P+++I+ PT ELA Q+ S C ++ ++ V GG
Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIA-TRTKHIAVTVVGGVGYN 177
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ G D+L+ATPGR + LI +G+ L + ++DE D + D F +++ +++
Sbjct: 178 PQKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRML-DMGFLPSVKQIVA 236
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q L +ATL + + ++ D V + +++F++ S
Sbjct: 237 LTPPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVS------- 289
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
F +K L++++++ S+ IVF T + ++ +R + H
Sbjct: 290 -----FDSKNDVLVEVLKREGASRVIVFMR---TKHRADSCCRRL--THAGISAAAIHGD 339
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F RS LV TD +RGID + V +VV FD P +P +Y+ R+G
Sbjct: 340 RSQAQRERALKAFRDGRSD----VLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIG 395
Query: 628 RTARGAGGTGKAFIFVVGKQV 648
RT R AG G A FV + +
Sbjct: 396 RTGR-AGEVGWALTFVTRQDI 415
>gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 464
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/361 (32%), Positives = 177/361 (49%), Gaps = 37/361 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++S+ + P+ IQA A P V+ K I Q+G+GKT ++LP+I
Sbjct: 3 FADLGLSDELLKSVLDAGYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +IL PT ELA+QV N K + ++ GG + Q
Sbjct: 63 LAHGRRRALM------PRSLILEPTRELAAQVAENFEKYGK-NHDLKMALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQEGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 116 VKALQEGVDVLIATPGRLMDLFERGKILLTGCEMLVIDEADRML-DMGFIPDIENICSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q L +AT+P I KL + F P V P + + +F V + Q
Sbjct: 175 PTTRQTLLFSATMPPPI-KKLADKFLSNPKSIEVARPAA--TNTNIAQFKVRSTTRQ--- 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K+ L L+ VS I+F N+ T R++ L+R + H
Sbjct: 229 ---------KREVLRHLLRTDNVSTAIIFANRKTTVRELAKSLQRHGFAAGEI-----HG 274
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVC-TDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ R A +++F K+ + ++C +D A+RG+D GV HV FD P P +YV R
Sbjct: 275 DMDQSARNAELQKF-----KDGEISILCASDVAARGLDVKGVSHVFNFDTPWHPDDYVHR 329
Query: 626 V 626
V
Sbjct: 330 V 330
>gi|384422265|ref|YP_005631624.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 644
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 34/376 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SF+ELG ++ + +++ + F P+ IQA A P ++ G + I+A ++G+GKT A+ LP+I
Sbjct: 42 SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 101
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L S P ++L PT ELA+QV S SL +P R V GG
Sbjct: 102 QEL---------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIP-RIHTVYGGVSIA 151
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL NL++G ++++ T GR + I+ G L+L LR ILDE D + N F ++S+ S
Sbjct: 152 EQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLN-MGFVEDIESIFS 210
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + +VV P +E+F+ +++DK
Sbjct: 211 HANKDARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVV---RDADK 267
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
AL++LI+ S +VFC T + + K D + V L H
Sbjct: 268 I---------EALVRLIDVSDNFYGLVFCQ---TKADADTVAKSLDERHYHVAAL--HGD 313
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F T R++ LV TD A+RGID G+ HVV + P D + Y RVG
Sbjct: 314 IPQSQREKILERFRTKRAR----ILVATDVAARGIDIEGITHVVNYSIPHDSATYTHRVG 369
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG G A FV
Sbjct: 370 RTGR-AGSQGIAISFV 384
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 197/412 (47%), Gaps = 35/412 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++++L + P+ IQ A PP+++G + +G+GKT A+ LPV+ R
Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77
Query: 330 LRQEEL--QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFR 385
+R E +G +P V+L PT ELA+QV C ++ + G + R + V GG
Sbjct: 78 IRDGERGERGARAQRGAAPSAVVLVPTRELAAQV---CEAMRRYGRRLGVRVLPVYGGQS 134
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QL L+EGVDV++ATPGR + + G L L LR +LDE D + D F + ++
Sbjct: 135 MSRQLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEML-DMGFAEDIDTI 193
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q + +AT+P I + D + RI E L D ++
Sbjct: 194 LERTPDDRQTMLFSATMPPRIAGLVRRYLRDPR--------RIELSRAESL-----DGDA 240
Query: 506 DKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+TA++ +K +AL ++++ T+VFC T +V+ + + + + R
Sbjct: 241 ASITQTAYVVPRGHKPAALGRVLDIETPEATVVFCR---TREEVDRLTETMNGRGYRAEA 297
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
L H +DQ R + T + +V TD A+RG+D + HVV +D P P
Sbjct: 298 L--HGGMDQHQRNRVVGRLRTGTAD----LVVATDVAARGLDIDQLTHVVNYDVPSAPEV 351
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
YV R+GR R AG G A + + + I + P+ +P+ +L
Sbjct: 352 YVHRIGRVGR-AGRQGSAITLAEPGEHRMIKAIERVTGQPVPIRKLPTVADL 402
>gi|347760077|ref|YP_004867638.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579047|dbj|BAK83268.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 445
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 195/413 (47%), Gaps = 34/413 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + +P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYTQPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ + K R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREKGRAHPKGA----RALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ ++++
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEADRML-DMGFVRDIRKIVAA 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + D P +++P + D+
Sbjct: 177 LPTDRQTLLFSATMPKSISDLAHGLLRD------PATVQVTPP------SSTVDRIRQAV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK+ AL L++ V + +VF KV L E + H
Sbjct: 225 MFVDTANKREALKLLVDSPKVERAVVFTLMKHEANKVAAFL-----SEHGITAEAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R M F + K LV TD A+RGID V HV +D P P YV R+GR
Sbjct: 280 SQGARERAMSGFRSGNVK----VLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKG------HPLHDVPSAFELMR 675
TAR AG G A +Q + + I + K HP H + MR
Sbjct: 336 TAR-AGREGWAVSLCDAEQRAWLRDIEKNIGKAIPVVSEHPYHSEAAENSTMR 387
>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 471
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 189/387 (48%), Gaps = 28/387 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +L Y+ +++ + +P+ IQ A P +++ + Q+G+GKT A+ LP+I
Sbjct: 6 ETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMI 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K PR ++L PT ELA QV + K R+ V+ GG Q
Sbjct: 66 HNL----ISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKY-TQIRTAVIFGGVGQN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + + G+DVLIATPGR + L+ + ++ L NL +LDE D + D F ++ +IS
Sbjct: 121 PQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRML-DMGFIHDIRKIIS 179
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI KL +++ P ++P V + + S
Sbjct: 180 YLPKRRQNLFFSATMPPEI-EKLAN-----SILVEPIRIDVTP------VSSTVELISQS 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T +KK+ LL L + KTI+F K+ +L + + ++ H
Sbjct: 228 VMYTELADKKNLLLHLFKDKNFKKTIIFTKTKHGANKISELLNK-----SGIKTDVIHGN 282
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +++F + +++ LV TD A+RGID + HV+ ++ P P YV R+G
Sbjct: 283 KSQSARQRALEDFRSGKNRA----LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIG 338
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR AG G A + SL + I
Sbjct: 339 RTAR-AGKNGIAIAIAEADERSLIKDI 364
>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
Length = 484
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 25/377 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + +++++ + P+ IQA A P +EG+ + Q+G+GKT A+ LP+I
Sbjct: 4 FSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMIT- 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++LAPT ELA+QV N + +K R++++ GG K Q
Sbjct: 63 -----LLGRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLI-GGTSFKDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + ++ G L L +++ ++DE D + D F ++ + +
Sbjct: 117 DKIIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRML-DMGFIPDIEEIFKRT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + + + +++ +V G + +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPS 235
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K+ L +LI E + I+FCN+ V L ++ + P H
Sbjct: 236 E-----KRELLRKLIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYG-----YQAAPIHGD 285
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ R + +F R E R+ LV +D A+RG+D V HV FD P +YV R+G
Sbjct: 286 LDQSHRTKTLDKF---RDNELRI-LVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIG 341
Query: 628 RTARGAGGTGKAFIFVV 644
RT R AG +G A + V
Sbjct: 342 RTGR-AGRSGTAIMICV 357
>gi|383852804|ref|XP_003701915.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Megachile
rotundata]
Length = 609
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/393 (31%), Positives = 193/393 (49%), Gaps = 32/393 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-V 326
+ F+E Y++E + +Q + +P+ IQA +P + GK + Q+GSGKTL Y+LP +
Sbjct: 113 QHFEEGNFPPYVLEVIHKQGYSQPTAIQAQGWPIALSGKDLVAIAQTGSGKTLGYILPAI 172
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV--LSNCRSLSKCGVPFRSMVVTGGF 384
+ + Q L S P +ILAPT ELA Q+ ++NC S GV R+ + GG
Sbjct: 173 VHIIHQPRL-----SPGDGPVALILAPTRELAQQIQEVANCFGES-SGV--RNTCIFGGA 224
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++
Sbjct: 225 PKGPQAHDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRK 283
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
+I Q L +AT P E+ L E F + + G +S +VD +
Sbjct: 284 IIEQIRPDRQVLMWSATWPKEV-RALAEDFLTDYMHLNIGSLTLSANHNIIQIVDVCQEF 342
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K LLQ I +KTI+F + T RKV++I + R + L
Sbjct: 343 EKDL--------KLYRLLQEIGNEKENKTIIF---VETKRKVDDITRNIRRDGW--QALS 389
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +Q+ R ++EF + R+ LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 390 IHGDKNQQERDHVLQEFKSGRAP----ILVATDVAARGLDVDDVKYVINFDYPSSSEDYI 445
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R TG A+ F + A ++E
Sbjct: 446 HRIGRTGR-RRQTGTAYAFFTTHNMKHAGDLIE 477
>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
Length = 510
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 199/381 (52%), Gaps = 35/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG ++++++ F P+ IQ ++ P +EGK I Q+G+GKT A+ +P+++
Sbjct: 4 TFKELGLVPEIMKAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIPILE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ +T P+ ++L+PT ELA Q L++ +P ++ + GG +
Sbjct: 64 KI---------DTTEKGPQAIVLSPTRELAIQSAEEMNRLAQY-LPIHALPIYGGQDIER 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++ ++++ATPGR M +K G + L +++ +LDE D + D F ++++++
Sbjct: 114 QFRALRKKPNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMV-DMGFIDDIRTILAG 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +F +AT+P I +L E F V++ ++ L E QE +
Sbjct: 173 MPEERQTMFFSATMPAPI-RELAESFLRDPVLVKIKAATVTIDLVE--------QEYIEL 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
P+ + K L +L++ IVF T R+ + + + ++ L H L
Sbjct: 224 PD---MQKFDCLCRLLDMENPELAIVFVR---TKRRADEVTEALKKRGYMAEGL--HGDL 275
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R A +++F KE + LV TD A+RG+D +GV HV FD P+D YV RVG
Sbjct: 276 SQQKRDAVVRQF-----KEGTIDILVATDVAARGLDISGVTHVYNFDMPQDSETYVHRVG 330
Query: 628 RTARGAGGTGKAFIFVVGKQV 648
RT R AG TG A FVV +++
Sbjct: 331 RTGR-AGQTGLAMTFVVSREI 350
>gi|119775819|ref|YP_928559.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
SB2B]
Length = 533
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 204/410 (49%), Gaps = 40/410 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++++L + + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + G + R +IL PT ELA+Q+ N + SK +P +S VV GG
Sbjct: 62 LLSQTQKAGPKQV-----RALILTPTRELAAQIADNITAYSKY-LPLKSTVVFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G+D+L+ATPGR + L ++ + L +LDE D + D F ++ ++
Sbjct: 116 QITTLRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRML-DMGFIHDIKRILKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + V + + +++++V DK
Sbjct: 175 LPAKRQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPV------DK- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
N+K ALL +L + +VFC T ++++ D + ++ H
Sbjct: 228 ------NQKPALLAELTRFYRWQQVLVFCR---TKHGANRLVRQMDAEG--IKAAAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F + A L+ TD A+RGID + + +VV F+ P P +YV R+G
Sbjct: 277 KSQNARTQALADF----KRGAIRMLIATDIAARGIDISELPNVVNFELPHVPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVV---GKQVSLAQRIMERN--RKG----HPLHDVP 668
RT R AG +G+A V KQ+ +R+++++ RK P+H +P
Sbjct: 333 RTGR-AGASGEAASLVCNEEAKQLRDIERLIKQSLPRKEFVGFEPVHGLP 381
>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase [Pedobacter heparinus DSM 2366]
gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
2366]
Length = 437
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 111/374 (29%), Positives = 185/374 (49%), Gaps = 29/374 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + ++ +L+ + + +P+ IQ A P +++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FKELNLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + ++L PT ELA Q+ + ++ K +P R +V+ GG QK Q
Sbjct: 63 LSKPHT---NTKIHKVIKALVLTPTRELAIQIEESFKAYGK-NLPIRHLVIFGGVGQKAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVD+L+ATPGR + L+ +G + L ++ +LDE D + D F ++ +I+
Sbjct: 119 TDALHRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRML-DMGFIHDVKKVIAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI + + KV + P +E GD
Sbjct: 178 PAKRQTLFFSATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGD------ 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KK L+ +++ + +VF T + I+K D + V+ H
Sbjct: 232 -------KKGLLMHILQDKTIETALVFAR---TKHGADRIVK--DLIKVGVKAEAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + T ++K R+ LV TD A+RGID + HV+ ++ P P YV R+GR
Sbjct: 280 SQNAR---QRALTNFKAKTTRI-LVATDIAARGIDVDELSHVINYELPNIPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIF 642
T R AG +G A F
Sbjct: 336 TGR-AGLSGTALSF 348
>gi|188994014|ref|YP_001928266.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
gi|334147112|ref|YP_004510041.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis
TDC60]
gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
33277]
gi|333804268|dbj|BAK25475.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis
TDC60]
Length = 427
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 184/388 (47%), Gaps = 33/388 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D +++ L NF+ + +QA PP++EG+ I Q+G+GKT AYLLP++ R
Sbjct: 3 FDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG---GFRQ 386
L E S VI+APT ELA Q+ S +P ++ + G G
Sbjct: 63 LSAGEF------ASDVVNAVIMAPTRELAQQIDQQVEGFSYF-MPVSAVAIYGGTDGVAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q + G D++IATPGR + + G L ++ +LDE D + + F+ +Q +
Sbjct: 116 EQQRRGMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQ-IY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P + Q + +AT+P +I + D + + + R + + C E+
Sbjct: 175 KQLPSSCQTVMFSATMPPKIRKLAASILRD-PIEVEIAISRPPESIMQSAYIC---YEAQ 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K P L +L E+S +TI+F + + R++ + L++ V H+
Sbjct: 231 KLP---------ILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKMG-----FNVADMHS 276
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L+Q R M++F LV TD +RGID + V+ +D P DP +YV R+
Sbjct: 277 DLEQSQREQVMRDFKNGYVD----VLVATDIVARGIDIDNIRVVINYDIPHDPEDYVHRI 332
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRI 654
GRTARG G G A FV ++ S +I
Sbjct: 333 GRTARGTNGEGLAITFVSEEEQSDFHKI 360
>gi|367015284|ref|XP_003682141.1| hypothetical protein TDEL_0F01190 [Torulaspora delbrueckii]
gi|359749803|emb|CCE92930.1| hypothetical protein TDEL_0F01190 [Torulaspora delbrueckii]
Length = 549
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 183/375 (48%), Gaps = 26/375 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E G DY+++ +K + F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 110 SFDEAGFPDYVLKEVKAEGFDKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPSIV 169
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++LAPT ELA Q+ C K R+ V GG +
Sbjct: 170 HINAQPLL----APGDGPIVLVLAPTRELAVQIQKECSKFGKSS-RIRNTCVYGGVPRGQ 224
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G +++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 225 QIRDLARGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 283
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ + D +V +G S +++ + + ++ D+
Sbjct: 284 IRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELAASHNIKQVVEVITDFEKRDR 343
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L K + + + SK +VF + TC ++ L ++ L H
Sbjct: 344 ------LTKH---MDIASQDKESKILVFASTKRTCDEITKYL-----RDDGWPALAIHGD 389
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
DQ R + EF T RS +V TD A+RGID G+++V+ +D P + +YV R+G
Sbjct: 390 KDQRERDWVLNEFRTGRSP----IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIG 445
Query: 628 RTARGAGGTGKAFIF 642
RT R AG TG A F
Sbjct: 446 RTGR-AGATGTAISF 459
>gi|347534130|ref|YP_004840800.1| DEAD/DEAH box helicase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504186|gb|AEN98868.1| DEAD-box ATP-dependent RNA helicase cshA [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 505
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 196/389 (50%), Gaps = 34/389 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG SD +++++ + P+ IQ P ++G+ I Q+G+GKT A+ LP+
Sbjct: 16 NFKDLGLSDSLLKAVADNGYAEPTAIQTETIPLTLKGEDVIGQAQTGTGKTAAFALPI-- 73
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LQG+ + + + ++++PT ELA Q + L + G R+ VV GG +
Sbjct: 74 ------LQGIDVNDP-NVQALVISPTRELAIQTQKEIQKLGR-GEGVRAQVVYGGSDIRK 125
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L++ +++ TPGR + IK L+L +++ +LDE D + N F ++S+I +
Sbjct: 126 QIYDLKKKPQIIVGTPGRLLDHIKRRTLKLEHVKFLVLDEADEMLN-MGFLEDIESIIKN 184
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q + +AT+P I V+ D K + + ++++ V ++
Sbjct: 185 TPSDRQTMLFSATMPDPIKRVGVQFMTDPKQIKVKSKELTTDLVDQYYVKVKDNE----- 239
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K + +L + TIVFC T R+V+ + K + + L H L
Sbjct: 240 -------KFETMTRLFDVEQPKVTIVFCR---TKRRVDEVAKGLIARGYKAAGL--HGDL 287
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R M EF ++ +LV TD A+RGID +GV HV FD P+DP YV R+GR
Sbjct: 288 TQSRRTQIMNEF----KRDQINYLVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGR 343
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMER 657
T R AG G + FV ++S R++E+
Sbjct: 344 TGR-AGHHGTSVTFVTPNEMSYL-RLVEK 370
>gi|342885803|gb|EGU85755.1| hypothetical protein FOXB_03603 [Fusarium oxysporum Fo5176]
Length = 539
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 212/435 (48%), Gaps = 64/435 (14%)
Query: 245 QYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE 304
Q +P PK + D + +F L ++++SL RP+ IQ P +++
Sbjct: 89 QTKPLIAPKNSIQAPTDPN----TTFSSLNVRPWLVQSLANMAIKRPTGIQKGCIPEILK 144
Query: 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364
G+ CI ++GSGKT+A+ +P++Q+ ++ + ++L PT ELA Q+
Sbjct: 145 GRDCIGGSRTGSGKTVAFAVPILQKWSEDPTAIFA---------IVLTPTRELALQIFEQ 195
Query: 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK----EGILQLIN 420
+++S ++++VTGG +TQ + + V+IATPGR I+ + I L
Sbjct: 196 FKAISSPQ-SLKAILVTGGSDMRTQAIEIGKRPHVIIATPGRLADHIRTSGEDTICGLRR 254
Query: 421 LRCAILDEVDILFNDE-------DFEVALQSLISSSPVTA-QYLFVTATLPVEIYNKLVE 472
+R +LDE D L N D E L L P T Q L TAT+ E+ + ++
Sbjct: 255 VRYVVLDEADRLLNANGPGSMLPDVEECLSVL---PPATERQTLLFTATITPEV--RALK 309
Query: 473 VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP--------ETAFLNKKSAL-LQL 523
P I PG + V C D ++ P +T +K+ L + L
Sbjct: 310 DMP------------IKPGKQPVFV-CEVDTQTLAIPTTLKQMYIKTPVTHKEHYLHVFL 356
Query: 524 IEKSPVSKTIV-FCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
+ ++ V KT++ FCN+ T + ++L+ + RV H+ L Q R+ N+ F
Sbjct: 357 LTEANVDKTVILFCNRTSTADYLHHLLRMLNH-----RVTSLHSKLPQRQRIDNLARF-- 409
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642
R+ AR+ LV TD A+RG+D V V+ +D PRDP +Y+ RVGRTAR AG G+A F
Sbjct: 410 -RASAARI-LVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTAR-AGRKGEAVSF 466
Query: 643 VVGKQVSLAQRIMER 657
V + V LA I +R
Sbjct: 467 VGQRDVELALTIEKR 481
>gi|338213906|ref|YP_004657963.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336307729|gb|AEI50831.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 431
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 188/381 (49%), Gaps = 39/381 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L + ++ S+K + + P+ IQ A P V+EGK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFDSLHLIEPILRSIKTEGYTTPTPIQEQAIPIVLEGKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + S+ + + +IL PT ELA Q+ + + + + V+ GG +Q
Sbjct: 62 LLVQGQTHA-SRREKRTIKALILTPTRELAIQIGESFAAYGRH-TRLKHTVIFGGVKQLR 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q ++LQ GVD+LIATPGR + L+ + + L +L +LDE D + D F ++ +I+
Sbjct: 120 QTDSLQNGVDILIATPGRLIDLMAQRFVSLKHLEIFVLDEADRML-DMGFVHDVRRIIAV 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI KL + +++ P ++P D
Sbjct: 179 IPPKRQSLFFSATMPPEIV-KLADT-----ILVKPEKVEVTP----------VSSTVDII 222
Query: 509 PETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
++ F NK + LL ++E + +VF KV +L+R + ++
Sbjct: 223 QQSVFFVDKDNKNALLLHILEDKSIETALVFTRTKHGADKVVKVLQRHE-----IKAEAI 277
Query: 565 HAALDQETR---LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H Q R L N KE TT LV TD A+RGID + +V+ F+ P P
Sbjct: 278 HGNKSQNARQNALNNFKEKTTR-------VLVATDIAARGIDVDELAYVINFEIPEIPET 330
Query: 622 YVRRVGRTARGAGGTGKAFIF 642
YV R+GRT R AG G A+ F
Sbjct: 331 YVHRIGRTGR-AGAKGTAYSF 350
>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
Length = 480
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 125/400 (31%), Positives = 206/400 (51%), Gaps = 44/400 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V+EGK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G K ++ + R +IL PT ELA+QV + + S+ +P ++ VV GG
Sbjct: 62 RL----MSG-PKVSANNVRALILTPTRELAAQVEESICAFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 116 QMIKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLKL 174
Query: 449 SPVTAQYLFVTATLPVEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI K + P + P + +E+ LV D
Sbjct: 175 LPEDRQSLLFSATFSDEITTLAKTITRNP-VSISTAPANTTVD-AVEQHLVTI------D 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV--LPF 564
K+ +T +AL+ LI++ + +VF + ++ R K TR ++
Sbjct: 227 KSKKT------TALICLIKQQKWEQVLVFS-------RTKHGANRIAEKLTRSKIPSAAI 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + +F K LV TD A+RGID + + VV D P ++YV
Sbjct: 274 HGNKSQGARTKALADFKNGDIK----VLVATDIAARGIDISELPIVVNLDLPNTAADYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQV-------SLAQRIMER 657
R+GRT R AG +G+A+ FV +++ +L Q+++ R
Sbjct: 330 RIGRTGR-AGASGQAWSFVSAEELQNLKDIETLIQKLLPR 368
>gi|387887011|ref|YP_006317310.1| DEAD/DEAH box helicase [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386871827|gb|AFJ43834.1| DEAD-box subfamily ATP-dependent helicase [Francisella noatunensis
subsp. orientalis str. Toba 04]
Length = 583
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 201/411 (48%), Gaps = 36/411 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++K F +LG + +I+++ + + P+ IQ A P ++ G+ + Q+G+GKT A+ LP
Sbjct: 5 TKKDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALP 64
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+I + E S +P+V++LAPT ELA QV + +K + + GG
Sbjct: 65 LINNMDLE-------SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNIPNLNVVCIYGGQE 117
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+Q+ L++G+ V++ T GR M I++G LQL NLR +LDE D + F ++ +
Sbjct: 118 YGSQIRALKQGIKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLR-MGFIDDVRYV 176
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+S Q L +AT+P +I + + E + CK+ + + ++F+V
Sbjct: 177 LSHVSDECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIV------- 229
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K AL +L+E I+F + +V + LK RV
Sbjct: 230 ------IKGFRKIDALDRLLEVEETDGVIIFVKTKTSTIEVADNLKALG-----YRVAAI 278
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+ + Q R + +F +++S LV TD +RGID + HV+ +D P D YV
Sbjct: 279 NGDMQQSQREYIVDQFRSAKSD----VLVATDVVARGIDLERISHVINYDMPNDSDTYVH 334
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV--PSAFEL 673
R+GRT R AG G + V K++ RI+ER G P+ +V PSA +L
Sbjct: 335 RIGRTGR-AGREGTSISLVPLKEMRFL-RILERF-TGSPMQEVFMPSAKDL 382
>gi|433610674|ref|YP_007194135.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|429555616|gb|AGA10536.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 504
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 186/387 (48%), Gaps = 29/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L GVD+L+ATPGR + L+ + L R +LDE D + D F L+ +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQML-DLGFIHDLRKISKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I E D KV + P + + +E+++ G
Sbjct: 177 VPKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSP-PGKAADKVEQYVHFVPGKDL--- 232
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K + L Q + +P +++F T E ++K D + H
Sbjct: 233 --------KTTILKQTLTANPDGLSLIFSR---TKHGAEKLMKHLD--HVGFKAASIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+G
Sbjct: 280 KSQGQRERALKAF---RDGEIRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR G G A F ++ L + I
Sbjct: 336 RTARN-GRDGIAIAFCAPDEIRLLRDI 361
>gi|410723166|ref|ZP_11362411.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410603370|gb|EKQ57804.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 526
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 199/410 (48%), Gaps = 44/410 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +++++ F +PSQIQ + P + G I Q+G+GKT AY LP+I +
Sbjct: 6 FATLGLKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIITK 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ S S + +ILAPT ELA QV LSK + + GG Q
Sbjct: 66 M----------SDSKGIKALILAPTRELAVQVKEEIERLSKYE-KTEVLAIYGGDSIDRQ 114
Query: 390 LENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
+ L++G VD+++ TPGR + LIK L L ++ +LDE D + N F ++ ++S
Sbjct: 115 IRALKKGTVDIVVGTPGRILDLIKRKCLHLDSIEFLVLDEADEMLN-MGFIDDMEEILSH 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEE--FLVDCSGDQE 504
+P Q L +AT+P I KL + + PD K+V +E+ F+++
Sbjct: 174 TPSERQTLLFSATMPDPI-AKLAKRYMKPDAKLVSIKKSSLTVSKIEQSYFMINNK---- 228
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
++ AL +L++ S I+FC T R V+ +++ K V +
Sbjct: 229 ----------HRLEALCRLLDLDNPSSAIIFCR---TKRGVDELVQELQSKGYMVEGM-- 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H + Q RL + +F KE L L+ TD A+RGID GV HV +D P+D YV
Sbjct: 274 HGDMTQAHRLTTLNKF-----KEGTLNLLIATDVAARGIDVEGVTHVFNYDLPQDVESYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R A +G A+ V K S+ ++I + +P+A E+
Sbjct: 329 HRIGRTGR-ADKSGTAYSLVTPKYFSMLKQIQNVTKSSITQKPIPTAEEI 377
>gi|407976248|ref|ZP_11157149.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
gi|407428423|gb|EKF41106.1| DEAD/DEAH box helicase [Nitratireductor indicus C115]
Length = 488
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 124/383 (32%), Positives = 186/383 (48%), Gaps = 40/383 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ ++ + +P+ IQA A P + GK + Q+G+GKT +++LP++
Sbjct: 13 TFSDLGLSAKVLSAVVDAGYTQPTPIQAGAIPHAIAGKDVLGIAQTGTGKTASFVLPMLT 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL + ++ + PR +IL PT ELA+QV N K G R + + GG
Sbjct: 73 RLER------GRARARMPRTLILEPTRELAAQVEEN---FVKYGKNHRLNIALLIGGVSF 123
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 124 DEQERKLERGADVLIATPGRLLDHFERGKLLLTGVDIFVIDEADRML-DMGFIPDIERIC 182
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV---VMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI KL E F V V P S + + V C
Sbjct: 183 KLIPFTRQTLFFSATMPPEI-TKLTEQFLQAPVRVEVARPATTNTS--ITQRFVKCGSKP 239
Query: 504 ESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+ K++ L +LI E + I+FCN+ +V + + R E
Sbjct: 240 WA----------KRARLRELIDAEGDTLKNAIIFCNR---KSEVATLFRSLVRHEYDAGA 286
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
L H +DQ R+A ++ F + K LV +D A+RG+D V HV FD P +
Sbjct: 287 L--HGDMDQRARMAMLENFRKGKLK----LLVASDVAARGLDIPDVSHVFNFDVPIHSED 340
Query: 622 YVRRVGRTARGAGGTGKAFIFVV 644
YV R+GRT R AG +G+AF V
Sbjct: 341 YVHRIGRTGR-AGRSGEAFTLVT 362
>gi|16264922|ref|NP_437714.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
1021]
Length = 503
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 186/387 (48%), Gaps = 29/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L GVD+L+ATPGR + L+ + L R +LDE D + D F L+ +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQML-DLGFIHDLRKISKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I E D KV + P + + +E+++ G
Sbjct: 177 VPKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSP-PGKAADKVEQYVHFVPGKDL--- 232
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K + L Q + +P +++F T E ++K D + H
Sbjct: 233 --------KTTILKQTLTANPDGLSLIFSR---TKHGAEKLMKHLD--HVGFKAASIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+G
Sbjct: 280 KSQGQRERALKAF---RDGEIRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR G G A F ++ L + I
Sbjct: 336 RTARN-GRDGIAIAFCAPDEIRLLRDI 361
>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350646414|emb|CCD58911.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 769
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 199/409 (48%), Gaps = 35/409 (8%)
Query: 253 KQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
++++K S G R SF EL DY++ + + + P+ IQ+ +P + G+ +
Sbjct: 75 RKKYKMSLSGRDVPRPVLSFNELNVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVG 134
Query: 311 ADQSGSGKTLAYLLP-VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
Q+GSGKT ++LLP VI + Q L + P +IL PT ELA QVL + +
Sbjct: 135 IAQTGSGKTASFLLPAVIHIMAQPRLL-----RNEGPICLILVPTRELAQQVLVVAKEFA 189
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
R+M GG + TQL +Q+G ++ IATPGR + I+ L + +LDE
Sbjct: 190 DAAS-LRAMCFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEA 248
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRI 488
D + D FE ++ +I + Q L +AT P E+ E D +V +G
Sbjct: 249 DRML-DMGFEPQIRKIIGHTRPDRQTLMWSATWPREVQTLAREFLTDYIQVNIGSVSLHA 307
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
+P + + +V+ D +K+ L++L+ ++T+VF + T R+ + +
Sbjct: 308 NPNITQ-IVEIMDD-----------WSKEQRLIELLTSFGRARTLVF---VETKRRTDQL 352
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGV 607
R+ V + H Q R E T + K R+ LV TD ASRG+D +
Sbjct: 353 TNSLRRRGFYVEAM--HGGKQQRDR-----ELTLANFKSGRMNILVATDVASRGLDIDNI 405
Query: 608 DHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
++VV FDFP +Y+ R+GRTAR + TG AF F K V A+ +++
Sbjct: 406 EYVVNFDFPNQTEDYIHRIGRTAR-SDKTGTAFTFFTHKNVRQARDLID 453
>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
Length = 518
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 117/394 (29%), Positives = 188/394 (47%), Gaps = 26/394 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E Y+++ + +QN+ P+ IQA +P + GK + Q+GSGKTL+YLLP I
Sbjct: 98 FHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVH 157
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + P ++LAPT ELA QV K +S + GG Q Q
Sbjct: 158 INHQPFL----EHGDGPICLVLAPTRELAQQVQQVAAEYGKASR-IKSTCIYGGAPQGPQ 212
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 213 IRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRML-DMGFEPQIRKIVDQI 271
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDKT 508
Q L +AT P E+ +L E F + + G ++S +VD D E +
Sbjct: 272 RPDRQTLMWSATWPKEV-RQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKE-- 328
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K LL+ I +KTI+F + T R+ +++ +R R + H
Sbjct: 329 ------DKLIRLLEEIMSEKENKTIIF---VETKRRCDDLTRRMRRDGW--PAMGIHGDK 377
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R + EF ++ L+ TD ASRG+D V V+ FD+P + +Y+ R+GR
Sbjct: 378 NQQERDWVLNEFKYGKAP----ILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGR 433
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
TAR + TG A+ F + A ++ R+ H
Sbjct: 434 TAR-SQKTGTAYTFFTPNNMKQAHDLVSVLREAH 466
>gi|334320464|ref|YP_004557093.1| DEAD/DEAH box helicase [Sinorhizobium meliloti AK83]
gi|384538673|ref|YP_005722757.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407723120|ref|YP_006842781.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
gi|334098203|gb|AEG56213.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
gi|336037326|gb|AEH83256.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
SM11]
gi|407323180|emb|CCM71781.1| DEAD/DEAH box helicase [Sinorhizobium meliloti Rm41]
Length = 504
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 186/387 (48%), Gaps = 29/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L GVD+L+ATPGR + L+ + L R +LDE D + D F L+ +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQML-DLGFIHDLRKISKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I E D KV + P + + +E+++ G
Sbjct: 177 VPKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSP-PGKAADKVEQYVHFVPGKDL--- 232
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K + L Q + +P +++F T E ++K D + H
Sbjct: 233 --------KTTILKQTLTANPDGLSLIFSR---TKHGAEKLMKHLD--HVGFKAASIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+G
Sbjct: 280 KSQGQRERALKAF---RDGEIRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR G G A F ++ L + I
Sbjct: 336 RTARN-GRDGIAIAFCAPDEIRLLRDI 361
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 203/410 (49%), Gaps = 44/410 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + +++++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + ++ + PR +IL PT ELA+QV N + K ++++ GG
Sbjct: 62 KLSR------GRARARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLI-GGVSFGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L GVDVLIATPGR + G + L ++ ++DE D + D F ++ +
Sbjct: 115 QEKKLDRGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDEADRML-DMGFIPDIEEICKK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P T Q LF +AT+P EI +L + F + + + S +++ L+ + D
Sbjct: 174 LPFTRQTLFFSATMPPEI-QRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRD----- 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K+ L ++IE+ V I+FCN+ +E L + + + H
Sbjct: 228 -------GKRDVLQRMIEEDNVKNAIIFCNRKRDVSVLERALSK-----SGLSAGAIHGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
LDQ TR + F R+ RL LV +D A+RG+D V HV +D P +YV R+G
Sbjct: 276 LDQSTRTRTLDGF---RNGTIRL-LVASDVAARGLDIPDVSHVFNYDVPSHAEDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGHPLH----DVPSA 670
RT R AG +G A GK ++ ++++ G+P+ DVP+A
Sbjct: 332 RTGR-AGKSGTAVTLSTREDGKYLAAIEKLI-----GNPIPSGDVDVPAA 375
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 183/374 (48%), Gaps = 27/374 (7%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K FKE G ++E++ +L + IQA++FPP++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPL 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ R+ + S S + P R+++L PT ELA Q+ N + + G+P R+ ++ GG
Sbjct: 63 LNRMIPK--ASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAYAD-GLPLRTSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L G D++IATPGR + +++ + L + ILDE D + D F L +
Sbjct: 120 FNAQKLELMRGADIVIATPGRLLDHVEQRTINLNQVEFLILDEADRML-DMGFMPDLLKI 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
++ P Q L +AT I + + D + + + + + + S +
Sbjct: 179 LAQLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAE-- 236
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K +ALL L+ + I+F N+ +TC+ +E L D + H
Sbjct: 237 ----------KNAALLYLLASRNFNNVIIFSNRKITCKNLERYLNNLD-----LSAQSLH 281
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F +++ LV TD A+RG+D + VD V+ ++ P +YV R
Sbjct: 282 GDKTQSERTKALNLFKSAKCN----ILVATDVAARGLDISDVDAVINYELPPTSEDYVHR 337
Query: 626 VGRTARGAGGTGKA 639
+GRT R AG G A
Sbjct: 338 IGRTGR-AGRKGIA 350
>gi|300718571|ref|YP_003743374.1| cold-shock protein [Erwinia billingiae Eb661]
gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
Length = 645
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 191/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ S+ +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DSSLKAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V P D S ++
Sbjct: 177 IPDNHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRP-------DIS------QS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TAF K AL + +E I+F +V L+R AAL
Sbjct: 224 YWTAFGRKTDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYN---------SAAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV FD P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNFDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 195/407 (47%), Gaps = 36/407 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQ A P V+EGK + A Q+G+GKT A+ LP+++
Sbjct: 2 SFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++ S R +IL PT ELA+QV C S+ +P RS VV GG +
Sbjct: 62 RLSKGD-----RARSNQARALILTPTRELAAQV-GECVSIYSSKLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDV++ATPGR + L + ++ +L +LDE D + D F ++ ++
Sbjct: 116 QMMRLRRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRML-DMGFIHDIRKILDI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I KL + ++V P +SP DK
Sbjct: 175 LPKRRQNLMFSATFSNDI-RKLAK-----ELVNNPVEISVSPPNTTAKTVKQWIHPVDK- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK--ETRVRVLPFH 565
+KSALL QLI + + +VF + ++ R R+ + H
Sbjct: 228 ------KQKSALLTQLIRDNNWDQALVFS-------RTKHGANRLTRQLCAKGINAAAIH 274
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F T + LV TD A+RGID + VV FD P+ +YV R
Sbjct: 275 GDKSQNARTKALADFKTGSVQ----ILVATDIAARGIDIDQLPQVVNFDLPQVAEDYVHR 330
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
+GRT R AG G+A V + L I +K P ++ FE
Sbjct: 331 IGRTGR-AGAEGQAVSLVSADEFKLLADIERLIQKRLPREEI-EGFE 375
>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
Length = 531
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 199/406 (49%), Gaps = 56/406 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++++++ Q + +PS IQ A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 ------RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVV 380
R+RQ ++ R ++L PT ELA+QV S+ K G+ P S VV
Sbjct: 62 MLSKGPRVRQNQV-----------RALVLTPTRELAAQV---NGSVVKYGINLPLTSTVV 107
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG + Q++ L++G DVL+ATPGR + L + ++ L +LDE D + D F
Sbjct: 108 FGGVKINPQMQKLRKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRML-DMGFIR 166
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDC 499
++ +++ P Q L +AT +I + + ++ + P + +P +E+ +
Sbjct: 167 DIRKILAFLPKKRQNLLFSATFSDDIRGLAKGLVNNPVEISVSPA-NSTAPTVEQSIYPV 225
Query: 500 SGDQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
DK KKSA+L +LI+ + + +VF K+ + L E
Sbjct: 226 ------DK-------KKKSAMLAKLIKDNDWRQVLVFSKTKHGANKLSHFL-----DEQG 267
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
+ P H Q R ++ F T + + LV TD A+RGID + VV FD P
Sbjct: 268 ISAAPIHGNKSQGARTKALENFKTGKVR----VLVATDIAARGIDIPQLPQVVNFDLPNV 323
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVS-------LAQRIMER 657
+YV R+GRT R AG GKA V +V L Q+++ER
Sbjct: 324 SEDYVHRIGRTGR-AGEVGKAISLVCADEVGELFGIERLIQQVLER 368
>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
Length = 706
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 185/378 (48%), Gaps = 30/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 107 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 166
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ + R S C R+ + GG
Sbjct: 167 VHINHQP----RLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFGGSP 219
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 220 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 278
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
I Q L +AT P E+ + D ++ +G + + + + C QE
Sbjct: 279 IEQIRPDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEIC---QE 335
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+K K S LL+ I SK I+F + T +KV++I K R+ +
Sbjct: 336 HEKEM------KLSQLLREIGTERGSKMIIF---VETKKKVDDITKTIKREG--WSAISI 384
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 385 HGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYIH 440
Query: 625 RVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 441 RIGRTGRCQSAGTAYAYF 458
>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 598
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 194/391 (49%), Gaps = 42/391 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++S+K+ + +PS IQ+ + P ++ GK I Q+G+GKT A+ LP++
Sbjct: 9 SFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLS 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++++LAPT ELA QV C+S +K + + GG +
Sbjct: 69 RL---------DAKDNNTQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDI 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR M I+ G L+L NL+ +LDE D + F ++ ++
Sbjct: 120 QLRQLKRGAQIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLR-MGFIDDVEWVLGH 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P T Q +AT+P EI K+ E + P+ + + +LV SG
Sbjct: 179 TPKTRQIALFSATMPKEI-KKVAEKYLHEPEHIKIQTKTSTATTINQRYWLV--SG---- 231
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
++K AL +++E I+F KI T + + R R E
Sbjct: 232 --------IHKLDALTRVLETEEFDGMIIFVRTKIATTELADKLTARGFRAEA------L 277
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
+ + Q TR E + K+ ++ L+ TD A+RG+D + HVV +D P D YV
Sbjct: 278 NGDIAQTTR-----ERIVEKLKKGQIDILIATDVAARGLDVERISHVVNYDIPYDTESYV 332
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
R+GRT R AG +G A +FV ++ + + I
Sbjct: 333 HRIGRTGR-AGRSGNAILFVAHRERRMLKAI 362
>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
Length = 460
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 188/379 (49%), Gaps = 36/379 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG + ++++L QN +P++IQ A P + GK + + ++GSGKTLA++LP++
Sbjct: 18 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLH- 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + SK+ PR VILAPT ELA QV S+ R++ G+ + + ++TGG Q
Sbjct: 77 -KSLKTKSFSKN---DPRAVILAPTRELAKQVYSHLRAML-GGLTYDATLITGGENFNDQ 131
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI-SS 448
+ L++ ++ATPGR ++ L L L ILDE D + D F LQ + ++
Sbjct: 132 VNALRKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRML-DLGFAEHLQKIHKAA 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
S Q L +ATL + NK D P RIS GL S D+ D T
Sbjct: 191 SHRRRQTLMFSATLDHDAVNKFAGNMLD-----NPK--RISVGL-------SNDEHKDIT 236
Query: 509 PETAF---LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
L+ K A+L ++IE + ++F ++ +L E ++ +
Sbjct: 237 QRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRLTKLL-----NEENLKAVAL 291
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q R M +F + LV TD ASRG+D V HV+ FD P+ EYV
Sbjct: 292 SGDMNQTARNNIMSQF----ERRVHKILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVH 347
Query: 625 RVGRTARGAGGTGKAFIFV 643
RVGRT R AG G A V
Sbjct: 348 RVGRTGR-AGKKGTAISLV 365
>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108882564|gb|EAT46789.1| AAEL002083-PA [Aedes aegypti]
Length = 699
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 184/384 (47%), Gaps = 28/384 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G DY++E +Q F +P+ IQA P + G+ + Q+GSGKTLAY+ P +
Sbjct: 124 FEQGGLPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYIAPALVH 183
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q++L+ P ++LAPT ELA Q+ + + + V GG +
Sbjct: 184 ITHQDQLR-----RGDGPIALVLAPTRELAQQIQQVATDFGQR-INANNTCVFGGAPKGP 237
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++ ++
Sbjct: 238 QIRDLERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRML-DMGFEPQIRKIMGQ 296
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + + + G +S +VD D E D+
Sbjct: 297 IRPDRQVLMWSATWPKEVRN-LAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQ 355
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K LL I +KTI+F + T R+V++I + +R R + H
Sbjct: 356 --------KLMKLLTEISAENETKTIIF---VETKRRVDDITRNINRNG--WRAVSIHGD 402
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + F R LV TD A+RG+D V V+ +D+P + +YV R+G
Sbjct: 403 KSQQERDYVLNAFRNGRQG----ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIG 458
Query: 628 RTARGAGGTGKAFIFVVGKQVSLA 651
RT R + TG A+ + A
Sbjct: 459 RTGR-SNNTGTAYTLFTNSNANKA 481
>gi|50302587|ref|XP_451229.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690512|sp|Q6CXW0.1|DBP8_KLULA RecName: Full=ATP-dependent RNA helicase DBP8
gi|49640360|emb|CAH02817.1| KLLA0A05203p [Kluyveromyces lactis]
Length = 435
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 133/417 (31%), Positives = 202/417 (48%), Gaps = 46/417 (11%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S FK LGCS +++E+L ++P+ IQ P +++G+ CI +GSGKT+A+
Sbjct: 1 MSNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAA 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ + E+ QG+ ++L PT ELA Q+ + + R +V GG
Sbjct: 61 PMLTKW-SEDPQGMFG--------IVLTPTRELAMQIAEQFTAFG-SAMNIRVAIVVGGE 110
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLI----KEGILQLINLRCAILDEVDILFNDEDFEV 440
Q LQ+ +IATPGR + ++ I L ++ +LDE DIL E F
Sbjct: 111 SIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLT-ETFSK 169
Query: 441 ALQSLISSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
L + +S P Q L TAT+ + V+ D G P + F V+
Sbjct: 170 DLATCVSILPPKNKRQNLLFTATMTDQ-----VKALSDAPQTEG------KPPVFTFEVE 218
Query: 499 CSGDQESDKTPETAFL-----NKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKR 551
+ KT ET +L K+S L Q++ EK S I+F N+ VT + LK
Sbjct: 219 SVDNVAIPKTLETTYLLVPEHVKESYLYQILTSEKYVKSSCIIFVNRTVTAEILRRTLKS 278
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611
D VRV H+ + Q+ R +++ F R++ AR+ L+ TD ASRG+D V+ VV
Sbjct: 279 LD-----VRVTSLHSQMPQQERTNSVQRF---RAQAARV-LIATDVASRGLDIPIVELVV 329
Query: 612 LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER-NRKGHPLHDV 667
+D P +P ++ R GRTAR AG G++ FV K + + I ER N+K DV
Sbjct: 330 NYDIPGNPDTFIHRAGRTAR-AGRHGESLCFVTEKDIQRVEAIEERINKKMEEFTDV 385
>gi|384918672|ref|ZP_10018741.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
gi|384467385|gb|EIE51861.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
Length = 487
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 125/384 (32%), Positives = 190/384 (49%), Gaps = 35/384 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++++ + P+ IQA A P +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGRDVLGIAQTGTGKTASFTLPMITS 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K V ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYAKY-VKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + S +
Sbjct: 117 ETLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVV--MGPGMHRISPGLEEFLVDCSGDQE 504
P T Q LF +AT+ EI ++ F P+ V I+ G F D+E
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTFLSNPERIEVARQASASETITQGAV-FFKASRRDRE 233
Query: 505 SDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ + K+ L +LI E + IVFCN+ V V LK+
Sbjct: 234 ATE--------KRDILRKLIDMEGDACTNAIVFCNRKVDVDVVAKSLKKHGYNAE----- 280
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
P H LDQ R + F R RL L+ +D A+RG+D V HV FD P P +Y
Sbjct: 281 PIHGDLDQSQRTRTLDGF---RDGSIRL-LIASDVAARGLDVPSVSHVFNFDVPGHPEDY 336
Query: 623 VRRVGRTARGAGGTGKAFIFVVGK 646
V R+GRT R AG GKAF V G+
Sbjct: 337 VHRIGRTGR-AGREGKAFTIVSGR 359
>gi|418404623|ref|ZP_12978074.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
gi|359501422|gb|EHK74033.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
meliloti CCNWSX0020]
Length = 504
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 186/387 (48%), Gaps = 29/387 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG S++++ +L F +P+ IQA A P V++ I Q+G+GKT A+ LP+I+
Sbjct: 3 TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + ++ R ++LAPT EL +Q+ +N + K P + +V GG
Sbjct: 63 KLVADGRRPDPRNI----RALVLAPTRELVNQIAANLKLFVKKS-PLKIGLVVGGVSINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L GVD+L+ATPGR + L+ + L R +LDE D + D F L+ +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQML-DLGFIHDLRKISKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I E D KV + P + + +E+++ G
Sbjct: 177 VPKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSP-PGKAADKVEQYVHFVPGKDL--- 232
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K + L Q + +P +++F T E ++K D + H
Sbjct: 233 --------KTTILKQTLTANPDGLSLIFSR---TKHGAEKLMKHLD--HVGFKAASIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +K F R E R+ LV TD A+RGID GV HV +D P P YV R+G
Sbjct: 280 KSQGQRERALKAF---RDGEIRV-LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR G G A F ++ L + I
Sbjct: 336 RTARN-GRDGIAIAFCAPDEIRLLRDI 361
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 198/397 (49%), Gaps = 46/397 (11%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP++
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++ ++ +P++++LAPT ELA QV S +K F + + GG +
Sbjct: 66 NKV----------TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G V++ TPGR M ++ G L+L +L+ +LDE D + F ++ ++
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLK-MGFIDDIEWILE 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q +AT+P +I K V H SP V Q + +
Sbjct: 175 HTPSERQLALFSATMPEQI--KRV-----------ANQHLRSP----VHVRIESSQTTVE 217
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ E F+ NK AL++++E I+F +C ++ L+ +
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASS----- 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
P H ++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D
Sbjct: 273 PLHGDMNQQAR-----ERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEA 327
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
YV R+GRT R AG TG A +FV +++ + R +ER+
Sbjct: 328 YVHRIGRTGR-AGRTGMAILFVTSREMRML-RTIERS 362
>gi|437999624|ref|YP_007183357.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813247|ref|YP_007449700.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429338858|gb|AFZ83280.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779216|gb|AGF50096.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 468
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 195/392 (49%), Gaps = 39/392 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+++G + ++ +LK F+ P+ +Q P + GK I++ Q+GSGKT A++LP++Q
Sbjct: 2 SFEKIGINSNILSALKTSGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF-RSMVVTGGFRQK 387
L Q+ KS + +P+V++L PT ELA Q+ S +P+ R + GG +
Sbjct: 62 MLSQKP-----KSNNINPQVLVLTPTRELALQITKATASYG-INMPWLRIATIVGGMPYR 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L + VD+L+ATPGR + +K + L +++ +LDE D + D F +++++
Sbjct: 116 NQIRALSKRVDILVATPGRLIDQMKSNKVSLTSIQTLVLDEADRML-DMGFIEDIETIVK 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q + +AT+ I +L + K++ P + + S Q+ D
Sbjct: 175 NTPRDRQTMLFSATIDESIA-RLAK-----KMMNNP----------QHIALTSSKQKHDN 218
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ F +K L ++ +S + + I+F + K+ L + V
Sbjct: 219 ITQKLFYADNNEHKVKLLNHVLNESSLDQAIIFTSTKKGADKLAECL-----SDNGFSVA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H ++Q R + + + K+ R+ LV TD A+RGID G+ H V FD P +Y
Sbjct: 274 ALHGDMNQRQRTRTISQL---QKKQIRV-LVATDIAARGIDINGISHAVNFDLPMQAEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRT R AG G A V ++ +RI
Sbjct: 330 VHRIGRTGR-AGRNGSALSLVTNEEKHKVRRI 360
>gi|294932648|ref|XP_002780372.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
marinus ATCC 50983]
gi|239890305|gb|EER12167.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
marinus ATCC 50983]
Length = 566
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 120/395 (30%), Positives = 191/395 (48%), Gaps = 36/395 (9%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FFS K F +L D + E+L +F + IQA A P +++GK + A ++GSGKTLA+L
Sbjct: 66 FFSDKKFTDLQICDPLKEALTACSFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFL 125
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTG 382
+P ++ L Q K+ +G V+I++PT ELA Q+ C+ L ++ +V G
Sbjct: 126 VPALELLVATRFQ--PKNGTG---VMIISPTRELAMQIFDVCKRLVDSTKLSQTYGIVMG 180
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
G +K + + L G+++L+ATPGR + L NL ++DE D + FE
Sbjct: 181 GVNRKNEADKLSRGINILVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQ-IGFEED 239
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVE------VFPDCKVVMGPGMHRISPGLEEF 495
+ ++ P Q +AT ++ N L +F K + GL +
Sbjct: 240 MNQILKILPKKRQTSLFSATQTQKV-NDLARLSLKKPIFVQSKGADDDAAISTASGLVQG 298
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK 555
V GD ++ L ++K+ K +VF + + + + +L D
Sbjct: 299 YVVVGGD------------DRLRLLFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYID-- 344
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
+ V+ H Q R+ N F S L+CTD A+RG+D VD +V +D
Sbjct: 345 ---IPVISIHGQKKQSARMTNFYRFCQMESG----ILLCTDVAARGLDIPKVDWIVQYDP 397
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL 650
P DP EY+ RVGRTARGA GTGKA +F++ +++
Sbjct: 398 PDDPKEYIHRVGRTARGAEGTGKALLFLMPEELGF 432
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/401 (29%), Positives = 197/401 (49%), Gaps = 33/401 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + P+ IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 15 SFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P +S VV GG
Sbjct: 75 LLSRG-----NRAQAKKVRALVLTPTRELAAQVAESVDTYGKY-LPLKSAVVFGGVGIGP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L +G + L +LDE D + D F ++ ++ +
Sbjct: 129 QISKLGKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRML-DMGFIHDIKKILRA 187
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT +I KL + V ++ + P + + +E+++ Q
Sbjct: 188 LPAKRQNLMFSATFSDDI-RKLAKGLVNNPVEISVTP-RNATAKSVEQYIYMVDQKQ--- 242
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K +AL+ LI+++ + +VF T I K + K+ + H
Sbjct: 243 ---------KTAALIHLIKQNDWQQVLVFSR---TKHGANRIAKNLEAKD--ITAAAIHG 288
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F + + LV TD A+RGID + +VV FD P P +YV R+
Sbjct: 289 NKSQGARTKALANFKSGLVR----VLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRI 344
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
GRT R AG +G+A V + L + I +K P +V
Sbjct: 345 GRTGR-AGASGQAVSLVSADESKLLRDIERLIKKNIPRKEV 384
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 115/397 (28%), Positives = 198/397 (49%), Gaps = 46/397 (11%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP++
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++ ++ +P++++LAPT ELA QV S +K F + + GG +
Sbjct: 66 NKV----------TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G V++ TPGR M ++ G L+L +L+ +LDE D + F ++ ++
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLK-MGFIDDIEWILE 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q +AT+P +I K V H SP V Q + +
Sbjct: 175 HTPSERQLALFSATMPEQI--KRV-----------ANQHLRSP----VHVRIESSQTTVE 217
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ E F+ NK AL++++E I+F +C ++ L+ +
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASS----- 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
P H ++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D
Sbjct: 273 PLHGDMNQQAR-----ERAVDQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEA 327
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
YV R+GRT R AG TG A +FV +++ + R +ER+
Sbjct: 328 YVHRIGRTGR-AGRTGMAILFVTSREMRML-RTIERS 362
>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 678
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 189/387 (48%), Gaps = 26/387 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E DY++ +++Q F P+ IQA +P + GK + ++GSGKT+AY+LP I
Sbjct: 129 FQEANFPDYIMNVIRKQGFTVPTPIQAQGWPIALSGKDIVGIAKTGSGKTIAYMLPAIVH 188
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + L+ P +ILAPT ELA Q+ S + R+ + GG + Q
Sbjct: 189 IHNQPPLELND----GPIALILAPTRELAQQIQSVANDFGEA-TRIRNSCIFGGAPKGPQ 243
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV+++IATPGR + +++G L +LDE D + D FE ++ ++
Sbjct: 244 FRDLESGVEIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 302
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDKT 508
Q L +AT P E+ L E + + + G ++S +VD + E +
Sbjct: 303 RPDRQVLMWSATWPKEV-RALAEDYLTDYIQLNIGSLQLSANHNILQIVDVCQEHEKE-- 359
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK LL I +KTI+F + T RKV+NI + RK+ L H
Sbjct: 360 ------NKLRQLLHEIGSEKENKTIIF---VETKRKVDNITQIL-RKDG-WPALSIHGDK 408
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R + +F R+ LV TD A+RG+D V V++FD+P +Y+ R+GR
Sbjct: 409 NQQERDHVLTQFRNGRAS----ILVATDVAARGLDVEDVKFVIIFDYPSSLEDYIHRIGR 464
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIM 655
T R + TG A+ F V A ++
Sbjct: 465 TGR-SEQTGTAYAFFTPHNVKHANALI 490
>gi|392378895|ref|YP_004986055.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
gi|356880377|emb|CCD01326.1| ATP-dependent RNA helicase [Azospirillum brasilense Sp245]
Length = 526
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 194/395 (49%), Gaps = 39/395 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ +++ + + +P+ IQ A P V++G+ + Q+G+GKT ++ LP+I
Sbjct: 3 FSELGLGPDVLRAIEDKGYTQPTPIQEQAIPWVLQGRDVLGCAQTGTGKTASFTLPMISI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR +IL PT ELA+QV + + K ++++ GG Q
Sbjct: 63 L------ASGRARARMPRSLILEPTRELAAQVAESFETYGKHHKLSMALLI-GGETFTEQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ ++S
Sbjct: 116 VKRLDRGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRML-DMGFIPDIERIVSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+P EI +L + F P V P + LV E D
Sbjct: 175 PKLRQTLFFSATMPPEI-RRLADAFLSNPKEVTVAPPASPSETVTQAMVLV-----HEED 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K + AL L+ V +FCN+ R V + K + L H
Sbjct: 229 K---------RKALRHLLRTEDVKNAFIFCNR---KRDVAILQKSLESHGFNAGAL--HG 274
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+ Q R+ ++ F K LVC+D A+RG+D G+ HV FD P +YV R+
Sbjct: 275 DMVQSKRMETLEAF----KKGEITLLVCSDVAARGLDVQGLSHVFNFDVPISAEDYVHRI 330
Query: 627 GRTARGAGGTGKAFIFVV---GKQVSLAQRIMERN 658
GRT R AG +G+AF GKQVS R+++R
Sbjct: 331 GRTGR-AGRSGRAFTLASPLDGKQVSAIGRLIKRE 364
>gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Bermanella marisrubri]
gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
Length = 475
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 198/412 (48%), Gaps = 55/412 (13%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
S+ + EP + + H ++ D +S ++LG F S IQA A
Sbjct: 85 SVDQFKVEPAEGKVRFHDFNLDARIM--RSIQDLG-------------FSYASPIQAEAL 129
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRL---RQEELQGLSKSTSGSPRVVILAPTAE 356
P + G+ I Q+G+GKT A+L+ V+Q+L + EE + PR +ILAPT E
Sbjct: 130 PYTLAGRDIIGKAQTGTGKTAAFLITVLQKLLTVKPEE------RFASEPRALILAPTRE 183
Query: 357 LASQVLSNCRSLSKCGVPFRSMVVTGGF---RQKTQLENLQEGVDVLIATPGRFMFLIKE 413
LA Q+ + LSK + V GG +QK QLEN E VDV++ATPGR + +++
Sbjct: 184 LAMQIAKDADGLSKY-ADLNIVTVLGGVDYDKQKEQLEN--EVVDVVVATPGRLLDYLQQ 240
Query: 414 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA--QYLFVTATLPVEIYNKLV 471
GI+ L + ++DE D + D F L+ +I +P + Q +AT P ++ L
Sbjct: 241 GIVYLDQVEMLVIDEADRML-DMGFIPDLKRIIRGTPEKSIRQTQLFSATYPYDVV-ALS 298
Query: 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK 531
E + P I P E + + Q+ ET K +AL++ +EK K
Sbjct: 299 ESW-----TYKPEQVEIEP---ESVATETVKQQFISLQET---QKDNALIEYLEKENTGK 347
Query: 532 TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLF 591
+I+F N+ TCR + + L + V+ L + Q R+ + F + E
Sbjct: 348 SIIFANRRDTCRDLADRLNK-----RGVKALLLSGEVAQAKRMKTLDRFKS----EDGAV 398
Query: 592 LVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFV 643
LV TD A RGI G+ HV ++ P DP +YV R+GRT R AG +G A F+
Sbjct: 399 LVATDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGR-AGESGTAITFI 449
>gi|392967949|ref|ZP_10333365.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
gi|387842311|emb|CCH55419.1| DEAD/DEAH box helicase domain protein [Fibrisoma limi BUZ 3]
Length = 663
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 186/378 (49%), Gaps = 32/378 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++K+F +L SD +++++ F+ PS IQA A PP++ G+ I Q+G+GKT A+ +P
Sbjct: 48 NQKTFADLDISDDLLQAVTDMGFVSPSPIQAEAIPPILAGRDVIGQAQTGTGKTAAFGIP 107
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + ++ S +V++L PT ELA QV R L+K R + GG
Sbjct: 108 ALEMI---------DTSVRSVQVLVLCPTRELALQVADEIRKLAKYKRGLRVEAIYGGDS 158
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ +L+ GV ++I TPGR M ++ L+L N+R ILDE D + D F ++S+
Sbjct: 159 IERQIRSLKGGVHIVIGTPGRVMDHMERNTLKLDNVRMMILDEADEML-DMGFREDIESI 217
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q + +AT+ I + D +V + +E+ +
Sbjct: 218 LEDMPEERQTILFSATMSKPIMAITQKFQKDPVLVKVVKKELTNQNIEQVYFEVK----- 272
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
P+ K + +LI+ + +VFCN T RKV+ I++ + L H
Sbjct: 273 ---PKA----KVEVMCRLIDTYDLKLLLVFCN---TKRKVDEIVEDLQIRGYMAEGL--H 320
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L Q R M +F + LV TD A+RGID VD V+ FD P D YV R
Sbjct: 321 GDLRQAQRNNVMSKFRAGTTN----ILVATDVAARGIDVDDVDAVINFDIPLDEEYYVHR 376
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG +G+AF V
Sbjct: 377 IGRTGR-AGKSGRAFSLV 393
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 196/397 (49%), Gaps = 46/397 (11%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L + +P+ IQ+ + P++ GK + Q+G+GKT A+ LP++
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
++ ++ +P++++LAPT ELA QV S +K F + + GG +
Sbjct: 66 NKV----------TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQ 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G V++ TPGR M ++ G L+L +L+ +LDE D + F ++ ++
Sbjct: 116 QQLNALKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLK-MGFIDDIEWILE 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q +AT+P +I H SP V Q + +
Sbjct: 175 HTPSERQLALFSATMPEQIKRV-------------ANQHLRSP----VHVRIESSQTTVE 217
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ E F+ NK AL++++E I+F +C ++ L+ +
Sbjct: 218 SIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASS----- 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
P H ++Q+ R E + K +L L+ TD A+RG+D + HVV +D P D
Sbjct: 273 PLHGDMNQQAR-----ERAVEQLKRGKLDILIATDVAARGLDVERIGHVVNYDIPYDAEA 327
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
YV R+GRT R AG TG A +FV +++ + R +ER+
Sbjct: 328 YVHRIGRTGR-AGRTGMAILFVTSREMRML-RTIERS 362
>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
Length = 441
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 204/409 (49%), Gaps = 36/409 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + +++++ + P+ IQ A P V+ G + Q+G+GKT A++LP++
Sbjct: 5 TFEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPILM 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R++ QG+ PR +ILAPT ELA Q+ + S+ R V GG KT
Sbjct: 65 RIKYA--QGMH------PRALILAPTRELAIQIEKAVETYSQH-TDIRFTCVYGGLGPKT 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E +Q GVD++IATPGR + L L L ++ ++DE D + D F + ++
Sbjct: 116 QIETIQAGVDIVIATPGRLLDLYSREELVLKDINTLVMDEADKMM-DMGFMPQINRILEI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q L +AT+P E KL E F + P ++P + +
Sbjct: 175 IPVKRQNLLFSATMP-EKVQKLSEDFLEF-----PEFVEVTPQA------TTAETVEQVL 222
Query: 509 PETAFLNKKSALLQ--LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK--ETRVRVLPF 564
ET + K LL L ++ + ++F T + +++ K RK E +VRV+
Sbjct: 223 FETPNIKTKINLLYHFLADEETFKRVMIFTR---TRKNADSVYKFLARKFSEDQVRVI-- 277
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
HA Q TR+ +M F +S + R+ LV TD +RGID V HV+ FD P +YV
Sbjct: 278 HANKGQNTRINSMNAF---KSGDIRI-LVGTDVVARGIDVTLVSHVINFDIPLIYEDYVH 333
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R A +GKA F+ V ++I + R P+ +P+A E+
Sbjct: 334 RIGRTGR-AMQSGKAISFITEADVYHMKKIEQIIRLQVPVEPIPAAVEI 381
>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
MED217]
gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
MED217]
Length = 442
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 31/376 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG D ++++L + + P+ IQ A P +++GK + + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + G K + +I+ PT ELA Q+ N + SK +S V+ GG +Q +
Sbjct: 62 QIYDKVGSGKGKR---KLKALIVTPTRELAIQIEDNVKEYSKY-TGIQSTVIFGGVKQAS 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ +++GVDVL ATPGR + L+K+G + L + +LDE D + D F ++ ++
Sbjct: 118 QVQAMRKGVDVLTATPGRLLDLVKQGFIDLGTIEYLVLDEADQML-DMGFIHDIKKILKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI + + D KV + P P E VD + S K
Sbjct: 177 VPHKRQSLFFSATMPKEIIDLSKLILGDFEKVSIAPE----KPTAER--VDQAVYFVSKK 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK L LI+ +VF T I+K D+ ++ H
Sbjct: 231 -------NKAKLLKHLIDTEKPETLLVFSR---TKHGANKIVKVLDK--AGIQAAAIHGN 278
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F KE +L LV TD A+RGID + ++ V+ +D P P YV R+
Sbjct: 279 KSQAARQKALNAF-----KEGKLHVLVATDIAARGIDVSELELVIQYDLPNVPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIF 642
GRT R A +G A F
Sbjct: 334 GRTGR-AKASGIAISF 348
>gi|338212382|ref|YP_004656437.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336306203|gb|AEI49305.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 444
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 131/411 (31%), Positives = 194/411 (47%), Gaps = 39/411 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++ ++ + PS IQ A P V++G + Q+G+GKT AY+LP++
Sbjct: 2 NFEDFNLNRQLLNAIADAGYEVPSPIQEQAIPLVLQGHDVLGIAQTGTGKTAAYVLPLLM 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R++ QG+ PR +ILAPT EL Q+ L+K R + + GG KT
Sbjct: 62 RIKYA--QGMH------PRALILAPTRELVMQIGKALGELAKY-TDLRHIAIYGGLGPKT 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E LQ+GVD+++ATPGRF+ L G + + L ++DE D + D F + ++
Sbjct: 113 QIEALQKGVDIVVATPGRFLDLYLRGEIVVKQLTTLVMDEADKMM-DMGFMPQINRILEV 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT P E +L E F + GP ++P + +
Sbjct: 172 IPRKRQNLLFSATFP-EKVERLSENFLE-----GPIRVEVTPQA------TTATRVHQII 219
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCR---KVENILKRFDRK---ETRVRVL 562
E K LL+L+ V +F +V R ENI K RK E VRV+
Sbjct: 220 YEVPNFRTKINLLELL----VQDAAIFERGMVFVRSRENAENIYKFLKRKVVTEDEVRVI 275
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
HA Q TR+ M+ F + + L+ TD A+RGID V HVV FD P +Y
Sbjct: 276 --HANKGQNTRINAMEAFKEGKVR----ILIATDVAARGIDVTQVSHVVNFDVPLIYEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
V R+GRT R A G A FV +I + R P +P A E+
Sbjct: 330 VHRIGRTGR-ANQEGNAITFVTIADDYHIAKIEKIIRMTIPREPLPEALEV 379
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 188/376 (50%), Gaps = 32/376 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG ++ ++++L+ F +PS IQA P V++G I Q+G+GKT A+ +PV+
Sbjct: 7 QTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVL 66
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+R+ ++S + + +IL PT ELA QV LSK R + GG
Sbjct: 67 ERI---------DTSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSID 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +L++GV +++ TPGR M ++ L+ +R +LDE D + D F ++S+++
Sbjct: 118 RQIRSLKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEML-DMGFREDIESILA 176
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT+ I + D ++ + +E+ +
Sbjct: 177 DMPEDRQTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVK------- 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
P+ K + +LI+ + +VFCN T RKV+ I++ D + H
Sbjct: 230 -PQA----KVEVMTRLIDMHHIKSLLVFCN---TKRKVDEIVE--DLQLRGYASEGIHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q+ R M +F + LV TD A+RGID +G+D V+ +D P D YV R+G
Sbjct: 280 LRQQQRSNVMSKFKAGVTT----ILVATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG +GKAF V
Sbjct: 336 RTGR-AGMSGKAFSLV 350
>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
Length = 447
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 182/368 (49%), Gaps = 30/368 (8%)
Query: 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEEL 335
S+ + E+L + + P+ IQ A P ++EG I Q+G+GKT A+ LP++ +L +
Sbjct: 4 SEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDLDR- 62
Query: 336 QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE 395
S++ + +P+V++L+PT ELA Q+ + + V FR + GG Q Q+ L+
Sbjct: 63 ---SRADACAPQVLVLSPTRELAVQIAQSFNVYGR-NVKFRLTTIFGGVGQNPQVRALKR 118
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQY 455
GV V IATPGR + L+ +G + L + +LDE D + D F AL++++S P Q
Sbjct: 119 GVHVAIATPGRLLDLMDQGYVDLSQAKTFVLDEADRML-DMGFMPALKTIVSKLPKQRQT 177
Query: 456 LFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
+F TAT+P ++ + + ++ + P + + GD
Sbjct: 178 IFFTATMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLMYVSQGD------------ 225
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRL 574
K++ L ++ V +T+VF T + + K + + +R H Q R
Sbjct: 226 -KRALLEHSLQAEGVGRTLVFTK---TKHGADRLAKELN--ASGIRTDAIHGNKTQNKRN 279
Query: 575 ANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAG 634
++ F + R + LV TD A+RGID GV HVV FD P DP YV R+GRT R AG
Sbjct: 280 RALESFRSGRLQ----VLVATDVAARGIDVDGVTHVVNFDLPIDPESYVHRIGRTGR-AG 334
Query: 635 GTGKAFIF 642
G A F
Sbjct: 335 KEGIALSF 342
>gi|408377691|ref|ZP_11175292.1| ATP-dependent RNA helicase [Agrobacterium albertimagni AOL15]
gi|407748682|gb|EKF60197.1| ATP-dependent RNA helicase [Agrobacterium albertimagni AOL15]
Length = 469
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 180/376 (47%), Gaps = 31/376 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +L F P+ IQ P V+ G+ I Q+G+GKT A+ LP+I+
Sbjct: 5 TFDDLGLSKNIVATLTTLGFTTPTPIQEKGIPVVLGGRDLIGLAQTGTGKTAAFGLPMIE 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++E + +++T R +ILAPT EL +Q+ N RS + +P + V GG
Sbjct: 65 MLLKDEKRPDNRTT----RALILAPTRELVNQIGDNLRSYLRR-LPLKINQVVGGASIGK 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L +R +LDE D + D F L+ +
Sbjct: 120 QQLQLEKGTDILVATPGRLLDLIARNAISLRAVRYLVLDEADQML-DLGFIHDLRKISKM 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I + D KV + P PG + D+
Sbjct: 179 VPPKRQTLLFSATMPASIADLAASFLTDPLKVAVSP------PG-------KAADKVEQH 225
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
A N K+ +L+ ++ +P ++IVF T E ++K D T V H
Sbjct: 226 VHFVAGQNAKTEMLKKILNDNPDGRSIVFLR---TKHGAEKLMKHLD--ATGYSVASIHG 280
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +K F K L+ TD A+RGID V HV +D P P YV R+
Sbjct: 281 NKSQGQRERALKGFRDGEIKT----LIATDVAARGIDIPAVSHVFNYDLPEVPDAYVHRI 336
Query: 627 GRTARGAGGTGKAFIF 642
GRTAR AG G A F
Sbjct: 337 GRTAR-AGRDGIAIAF 351
>gi|359409801|ref|ZP_09202266.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
gi|357168685|gb|EHI96859.1| DEAD/DEAH box helicase domain protein [Clostridium sp. DL-VIII]
Length = 525
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 199/410 (48%), Gaps = 44/410 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++ ++ F +PSQIQ + P + G I Q+G+GKT AY LP++ +
Sbjct: 6 FATLGLKESIVRAISDLGFTQPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPILTK 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ S + + ++LAPT ELA QV + LSK + V GG Q
Sbjct: 66 M----------SNARGIKALVLAPTRELAVQVNDEIQRLSKYE-KAEVLSVYGGDSIDRQ 114
Query: 390 LENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
+ L++G VD+++ TPGR + L+K L L N+ +LDE D + N F +++++S
Sbjct: 115 IRALKKGTVDIVVGTPGRLLDLLKRKCLHLDNIEFLVLDEADEMLN-MGFIDDIEAILSH 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEE--FLVDCSGDQE 504
+P Q L +AT+P I KL + + PD K+V +E+ F+++
Sbjct: 174 TPSERQTLLFSATMPDPIA-KLAKRYMKPDAKLVTIKKSSLTVSKIEQSYFMINNK---- 228
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
++ AL +L++ S I+FC T R V+ +++ K V
Sbjct: 229 ----------HRLEALCRLLDLDNPSSAIIFCR---TKRGVDELVQELQSKGYMVE--GM 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H + Q RL + +F KE L L+ TD A+RGID GV HV +D P+D YV
Sbjct: 274 HGDMTQAHRLTTLNKF-----KEGTLSLLIATDVAARGIDVEGVTHVFNYDLPQDVESYV 328
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R A +G A+ V K S+ ++I + VP+A E+
Sbjct: 329 HRIGRTGR-ANKSGTAYSLVTPKDFSMLKQIQNVTKSSITQKPVPTAEEI 377
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 187/376 (49%), Gaps = 32/376 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +LK + + P+ IQA A P +EG+ + Q+GSGKT A+LLP +QR
Sbjct: 5 FSDLLHDKNILSALKTEGYETPTPIQAQALPAALEGRDIMAGAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ + PR ++LAPT ELA+QV N ++ +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKSGKGPRALVLAPTRELAAQVEKNAQAYAKNMKWFRTVTIVGGSSFGQQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L + VD+++ATPGR M L+ G + L ILDE D + D F ++++++++
Sbjct: 120 IRALSKPVDLVVATPGRLMDLMDSGKVDFDRLEVLILDEADRML-DMGFIDDIETIVAAT 178
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESDK 507
P + Q L +AT + ++ + +V+ + R+ +EE L+ C + D+
Sbjct: 179 PESRQTLLFSATWDGAVGKLARKLTKNPEVIE---IERVDDQGKIEEQLLYCDDKRHKDR 235
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
L ++ + + + ++F + + + L +D+ H
Sbjct: 236 L-----------LDYILRDANIDQCVIFTSTKAMTEVLADEL--YDKG---FAANCLHGD 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R + + R K LV TD A+RGID + HV+ +D P+ +YV R+G
Sbjct: 280 MPQGWRNRTLMDLRKGRCK----ILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIG 335
Query: 628 RTARGAGGTGKAFIFV 643
RT R AG TG A F
Sbjct: 336 RTGR-AGRTGLAITFA 350
>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 469
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 182/378 (48%), Gaps = 30/378 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ + + PS IQA A P ++EG+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FATLGLRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E + + PR +ILAPT ELA+QV + K GV S GG Q
Sbjct: 63 LSESEFK------NKRPRALILAPTRELAAQVHQSILDYGK-GVDLHSACFFGGVNINPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ G+D+++ATPGR + L + L + +LDE D + D F ++ ++
Sbjct: 116 ISKLRRGLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRML-DMGFIHDIRKILKLL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT Y K V+ D ++ P ++P + + DQ + +
Sbjct: 175 PHDRQNLFFSAT-----YAKDVKKLADS-ILRNPVEVEVAP------RNSTADQIAQEAY 222
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
NK+ AL LI+ + +VF T + K+ D + H
Sbjct: 223 SIGQKNKREALSNLIKDGDWKQVLVFTR---TKHGANRLAKQLD--SDGITAAAIHGNKS 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R +++F T+ + LV TD A+RGID + HVV F+ P P +YV R+GRT
Sbjct: 278 QSARERALQDFKTNYIR----VLVATDIAARGIDIIDLPHVVNFELPNIPEDYVHRIGRT 333
Query: 630 ARGAGGTGKAFIFVVGKQ 647
R AG GKA V ++
Sbjct: 334 GR-AGKKGKAISLVCSEE 350
>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
Length = 633
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 10 TFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 70 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDV 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 121 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI + + + ++
Sbjct: 180 IPEGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSM-------TTRPDISQS 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 227 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNS---------AAL 277
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 278 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 336
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 337 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 378
>gi|160380611|sp|A6ZRX0.1|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
box protein 2; AltName: Full=p68-like protein
gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
gi|349580827|dbj|GAA25986.1| K7_Dbp2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 546
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 188/395 (47%), Gaps = 26/395 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY++ +K + F +P+ IQ +P + G+ + +GSGKTL+Y LP I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++LAPT ELA Q+ + C R+ V GG +
Sbjct: 174 HINAQPLL----APGDGPIVLVLAPTRELAVQIQTECSKFGHSS-RIRNTCVYGGVPKSQ 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G +++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 229 QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 287
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ + D +V +G S + + + S ++ D+
Sbjct: 288 IRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDR 347
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
LNK L+ + KT++F + C + L +E L H
Sbjct: 348 ------LNK---YLETASQDNEYKTLIFASTKRMCDDITKYL-----REDGWPALAIHGD 393
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
DQ R ++EF RS +V TD A+RGID G+++V+ +D P + +YV R+G
Sbjct: 394 KDQRERDWVLQEFRNGRSP----IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIG 449
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
RT R AG TG A F + L +++ R+ +
Sbjct: 450 RTGR-AGATGTAISFFTEQNKGLGAKLISIMREAN 483
>gi|378768793|ref|YP_005197267.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
gi|386018183|ref|YP_005936486.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|386080899|ref|YP_005994424.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
gi|354990080|gb|AER34204.1| cold-shock DEAD box protein A [Pantoea ananatis PA13]
gi|365188280|emb|CCF11230.1| ATP-dependent RNA helicase DeaD [Pantoea ananatis LMG 5342]
Length = 630
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI + + + ++
Sbjct: 177 IPEGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSM-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNS---------AAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase [Xanthobacter autotrophicus Py2]
gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
Py2]
Length = 537
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 196/408 (48%), Gaps = 34/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ ++ + +P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFSELGLSEKVLAAVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + PR +IL PT ELA+QV N K ++ GG
Sbjct: 62 LLEH------GRARARMPRTLILEPTRELAAQVEENFTRYGKNH-KLNVALLIGGVSFGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L GVDVLIATPGR + ++ G L L + ++DE D + D F ++ +
Sbjct: 115 QDSKLLRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRML-DMGFIPDIERVCKL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+P EI +LV F V + + ++ SG ++ D
Sbjct: 174 VPFTRQTLFFSATMPPEI-QRLVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYD-- 230
Query: 509 PETAFLNKKSALLQLIEK-SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K+ L +LI + I+FCN+ ++ +L R +K + H
Sbjct: 231 -------KREVLRELIRNCDGLQNGIIFCNR----KRDVAVLHRSLQKHG-FNAVALHGD 278
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+DQ R+ + +F RS EA L LV +D A+RG+D V HV +D P +YV RVG
Sbjct: 279 MDQHARIKALDQF---RSGEATL-LVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVG 334
Query: 628 RTARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGH--PLHDVPSA 670
RT R AG G A+ V K V+ ++++ H PL D P A
Sbjct: 335 RTGR-AGRAGTAYTLVTHTDAKSVTAIEKLIGNAVPWHGAPLGDAPPA 381
>gi|378732005|gb|EHY58464.1| ATP-dependent RNA helicase HAS1 [Exophiala dermatitidis NIH/UT8656]
Length = 631
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 195/405 (48%), Gaps = 55/405 (13%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F ELG S+ +++L F ++IQ PP++ G+ + A ++GSGKTLA+L+P +
Sbjct: 150 QKFSELGLSEKTMKALNEMKFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLAFLIPAV 209
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGF 384
E L L V++++PT ELA Q+ R L + F S +V GG
Sbjct: 210 -----EMLHALRFKPRNGTGVIVVSPTRELALQIFGVARDL----MQFHSQTFGIVIGGA 260
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVAL 442
+ + + L +GV++LIATPGR + ++ +G + N++ ++DE D + + FE +
Sbjct: 261 NRSAEADKLTKGVNLLIATPGRLLDHLQNTKGFI-YKNVKALVIDEADRIL-EVGFEDEM 318
Query: 443 QSLISSSPVT-AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----------MHRISPG 491
+ ++ P Q + +AT ++ + ++ + PG H G
Sbjct: 319 RQIVKILPKEDRQTMLFSATQTTKVEDL-------ARISLRPGPLYINVDHTKEHSTVEG 371
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKR 551
LE+ V C D+ FL L ++++ K IVF + + +L
Sbjct: 372 LEQGYVICDSDKR--------FL----LLFSFLKRNLKKKVIVFMSSCNCVKYHAELLNY 419
Query: 552 FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVV 611
D + VL H L Q+ R EF +++ LVCTD A+RG+D VD +V
Sbjct: 420 ID-----LPVLELHGNLKQQKRTNTFFEFCNAKAG----ILVCTDVAARGLDIPAVDWIV 470
Query: 612 LFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
FD P DP +Y+ RVGRTARGA G G++ +F+ +V + E
Sbjct: 471 QFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPNEVGFLSHLKE 515
>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
gi|74659543|sp|Q6BY27.1|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
Length = 536
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 203/442 (45%), Gaps = 56/442 (12%)
Query: 242 HNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP 301
H+++ + TD PK SF E G DY+++ +K+Q F +P+ IQ +P
Sbjct: 91 HDMKCDGTDIPK------------PITSFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPM 138
Query: 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361
+ G+ + +GSGKTL+Y LP I + + L S P V++LAPT ELA Q+
Sbjct: 139 ALSGRDMVGIASTGSGKTLSYCLPSIVHINAQPLL----SPGDGPIVLVLAPTRELAVQI 194
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
C R+ V GG + Q+ +L GV++ IATPGR + +++ G L +
Sbjct: 195 QQECSKFGSSSR-IRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRV 253
Query: 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVV 480
+LDE D + D FE ++ ++ Q L +AT P E+ + D +V
Sbjct: 254 TYLVLDEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQVT 312
Query: 481 MG----PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS---PVSKTI 533
+G H I+ +E T F K+ L++ +E + P +K +
Sbjct: 313 VGSLELAASHTITQLVEVV---------------TEF-EKRDRLIKHLETATADPEAKCL 356
Query: 534 VFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLV 593
+F + TC ++ N L + L H Q R +KEF T +S +V
Sbjct: 357 IFASTKRTCDEITNYL-----RADGWPALAIHGDKQQGERDWVLKEFKTGKSP----IMV 407
Query: 594 CTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQR 653
TD A+RGID G+ +V+ D P + +YV R+GRT R AG TG A F L
Sbjct: 408 ATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGR-AGSTGTAVSFFTDNNSKLGGD 466
Query: 654 IMERNRKGHPLHDVPSAFELMR 675
+ + R+ + +P ELMR
Sbjct: 467 LCKIMREAN--QTIPP--ELMR 484
>gi|395784485|ref|ZP_10464323.1| hypothetical protein ME3_00979 [Bartonella melophagi K-2C]
gi|395423735|gb|EJF89929.1| hypothetical protein ME3_00979 [Bartonella melophagi K-2C]
Length = 467
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 200/397 (50%), Gaps = 45/397 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ +I++++ + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 7 SFDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R VV GG
Sbjct: 67 LLEK------GRARARMPRTLILEPTRELAAQVQEN---FDKYGMNHRLNVVLLIGGVSF 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L++G DVLIATPGR + + G L LI ++DE D + D F ++ +
Sbjct: 118 EDQNRKLEQGADVLIATPGRLLDHFERGKLLLIGTETLVIDEADRML-DMGFIPDIERIC 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+P T Q LF +AT+ EI KL E F P C V + + + LV SG +
Sbjct: 177 KLTPFTRQTLFFSATMAPEI-TKLTEQFLHSPICVEVTKAS--STATTITQRLVK-SGSK 232
Query: 504 ESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
D K++ L +LI E + I+FCN+ ++ L +++ V
Sbjct: 233 AWD---------KRAVLRELIYNEGDELKNAIIFCNRKKDISELFRSLTKYN-----FSV 278
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H +DQ +R+ + +F K+ +L LV +D A+RG+D V HV +D P
Sbjct: 279 GALHGDMDQHSRMNTLADF-----KDNKLTLLVASDVAARGLDIPDVSHVFNYDVPTHAE 333
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVG---KQVSLAQRI 654
+Y+ R+GRT R A +GKAF V K +S ++I
Sbjct: 334 DYIHRIGRTGR-AKRSGKAFTIVTHDNQKYISAIEKI 369
>gi|384252098|gb|EIE25575.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 610
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/415 (28%), Positives = 202/415 (48%), Gaps = 40/415 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-- 325
++F+ +G + +++ ++R + P+ IQA A+P ++G+ + ++GSGKT +LLP
Sbjct: 118 QTFESVGFTSNIMDEIRRAGYKAPTPIQAQAWPVALQGRDLVAIAKTGSGKTCGFLLPGF 177
Query: 326 -VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+ +R + QG P +++LAPT ELA Q+ + R+ GG
Sbjct: 178 LHVNAVRPDPRQG--------PSMLVLAPTRELAVQIKEEADKFGRS-AGIRNTCTYGGA 228
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ QL ++Q GV ++IATPGR ++ G ++L + +LDE D + D FE +Q
Sbjct: 229 PKGPQLRDIQYGVHLIIATPGRLNDFLEGGQVRLGQVSYLVLDEADRML-DMGFEPQIQR 287
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ S P Q LF +AT P E+ + F K V H G+EE LV +
Sbjct: 288 IVRSIPTNRQTLFFSATWPREV-KAIASQFVTNKTV-----HVFVGGVEENLVANKAITQ 341
Query: 505 SDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + NK+ L +++ P ++ I+FC+ C ++ L R R
Sbjct: 342 FVHVMK-PYDNKQQKLREILHSKPTGTRIIIFCSTKRMCDQLSRDLSR------EFRAAA 394
Query: 564 FHAALDQETR---LANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q+ R +++ K+ TT +V TD A+RG+D V VV +DFP
Sbjct: 395 IHGDKKQQERDWVISSFKQGTTP-------VMVATDVAARGLDVPNVGAVVNYDFPNGVE 447
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELMR 675
+Y+ R+GRT R AG +G+A+ F + A+ + R+ + + VP E M+
Sbjct: 448 DYIHRIGRTGR-AGASGEAYTFFTPQDSKYARELSRVLREANQV--VPPELESMQ 499
>gi|338733518|ref|YP_004671991.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
gi|336482901|emb|CCB89500.1| ATP-dependent RNA helicase DBP2 [Simkania negevensis Z]
Length = 432
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 193/392 (49%), Gaps = 35/392 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L ++++++ + +P++IQ A P +V+G + Q+G+GKT A+LLP +
Sbjct: 12 TFNNLCLHPKILKAIQLAGYPKPTEIQQKAIPKIVQGFDIRASAQTGTGKTAAFLLPALH 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +KS G PRV+ILAPT ELA Q+ S SK +++ V GG
Sbjct: 72 RL----ISPATKSGIG-PRVLILAPTRELAQQIESQANKYSKSLQRIKTVCVVGGMPYPA 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L ++LIATPGR + ++ + L ILDE D + D F ++ ++ +
Sbjct: 127 QMRQLSRPHEILIATPGRLIDFMERNKIDFSRLEMLILDEADRML-DMGFSKPVEQIVQA 185
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P T Q L +ATL E+ KL E K++ P E +V +E +
Sbjct: 186 TPSTRQTLLFSATLQGEVI-KLSE-----KLLNKPM---------EIIVHAEQQKEQNIK 230
Query: 509 PETAF---LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
F L K+ LL ++ + IVF + T R + + + D ++ + V
Sbjct: 231 QTLHFADDLKHKNRLLDHILNQEETGHMIVFTS---TKRHADQLAR--DLRDKQHPVAAL 285
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H ++Q R + + + + LV TD A+RGID + HV+ +D P + +YV
Sbjct: 286 HGDMNQNKRSRTLNQLRKGKIR----ILVATDVAARGIDVQSITHVINYDLPTNVEDYVH 341
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R AG TG+A FV + + ++I E
Sbjct: 342 RIGRTGR-AGATGQALSFVSDRDTLMMKKIQE 372
>gi|385333348|ref|YP_005887299.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 440
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 197/393 (50%), Gaps = 35/393 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G + T PR +IL PT ELA+QV + SK +P ++ VV GG +
Sbjct: 62 RL------GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-IPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ ++S
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILSL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP-GLEEFLVDCSGDQESDK 507
P Q L +AT EI L E D V + S +++ + D+
Sbjct: 174 LPAKRQNLLFSATFSNEIRT-LAEGLLDNPVQVEVAARNTSAENIKQSVYPV------DQ 226
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ +TA L+K L+ + + +VF T + ++ ++ + H
Sbjct: 227 SQKTALLSK------LVRDNSWDQVLVFTR---TKHGANRLTQKLEKDG--ITAAAIHGN 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F ++ E R+ LV TD A+RG+D + VV F+ P P +YV R+G
Sbjct: 276 KSQGARTRALADF---KAGEVRV-LVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVV---GKQVSLAQRIMER 657
RT R AG +G A V GK ++ +R++++
Sbjct: 332 RTGR-AGESGHALSLVSADEGKMLAGIERLIKK 363
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 190/391 (48%), Gaps = 40/391 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG SD +++++ R + + IQA P V+EGK I Q+G+GKT A+ LP++QR
Sbjct: 3 FTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 330 L--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +Q L +++PT ELA Q L K + VV GG +
Sbjct: 63 LDFDNHNIQAL-----------VVSPTRELAIQTQEEIFRLGKDERA-KVQVVYGGADIR 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ NL++ V++ TPGR + I+ G ++L +++ +LDE D + N F ++S+I
Sbjct: 111 RQIRNLKQNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLN-MGFLEDIESIIK 169
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT+P EI V+ + H + +E D DQ K
Sbjct: 170 QVPDERQTMLFSATMPPEIKRIGVQFMKEP--------HHVKIKSKEMTADTV-DQYYVK 220
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K + +L + TIVF T R+V+ + K + + H
Sbjct: 221 AKE---FEKFDIMTRLFDVQAPELTIVFGR---TKRRVDELSKGLEARG--YNAAGIHGD 272
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q+ R M++F K +L LV TD A+RG+D +GV HV +D P+DP YV R+
Sbjct: 273 LSQQRRTQIMRQF-----KAGKLDILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRI 327
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
GRT R AG G + FV ++ R++E+
Sbjct: 328 GRTGR-AGHKGVSLTFVTPNEMEYL-RVIEK 356
>gi|398364809|ref|NP_014287.3| Dbp2p [Saccharomyces cerevisiae S288c]
gi|118284|sp|P24783.1|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
box protein 2; AltName: Full=p68-like protein
gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
Length = 546
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/395 (28%), Positives = 188/395 (47%), Gaps = 26/395 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY++ +K + F +P+ IQ +P + G+ + +GSGKTL+Y LP I
Sbjct: 114 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIV 173
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++LAPT ELA Q+ + C R+ V GG +
Sbjct: 174 HINAQPLL----APGDGPIVLVLAPTRELAVQIQTECSKFGHSSR-IRNTCVYGGVPKSQ 228
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G +++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 229 QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 287
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ + D +V +G S + + + S ++ D+
Sbjct: 288 IRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDR 347
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
LNK L+ + KT++F + C + L +E L H
Sbjct: 348 ------LNK---YLETASQDNEYKTLIFASTKRMCDDITKYL-----REDGWPALAIHGD 393
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
DQ R ++EF RS +V TD A+RGID G+++V+ +D P + +YV R+G
Sbjct: 394 KDQRERDWVLQEFRNGRSP----IMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIG 449
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
RT R AG TG A F + L +++ R+ +
Sbjct: 450 RTGR-AGATGTAISFFTEQNKGLGAKLISIMREAN 483
>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
Length = 564
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 185/375 (49%), Gaps = 25/375 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + S+ R ++L PT ELA+QV + R+ K + +S V+ GG
Sbjct: 62 RLAQGQAP-TSRFGGRGVRALVLTPTRELAAQVEESVRTYGKH-LDIKSTVIFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+ATPGR + L ++G + L + +LDE D + D F ++ +++
Sbjct: 120 QIERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D + + +++P + + + S
Sbjct: 179 LPKAKQSLLFSATFSDEIRELAAGLLNDPQSI------QVTP------RNTTVQRISQVI 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KK LL +I++ S+ +VF V L + V+ + H
Sbjct: 227 HPVGRGKKKQVLLHIIQEHDWSQVLVFTRTKFGANNVAEYLTKHG-----VQAMALHGNK 281
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R ++ F + + + LV TD A+RGID + HVV ++ P P +YV R+GR
Sbjct: 282 SQSARTQALEGFKSGQIRA----LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGR 337
Query: 629 TARGAGGTGKAFIFV 643
T R AG G+A V
Sbjct: 338 TGR-AGKEGQAVSLV 351
>gi|327351047|gb|EGE79904.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ATCC
18188]
Length = 553
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SL RP+ IQ P +++G+ CI ++GSGKT+A+ P++Q
Sbjct: 122 SFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAPILQ 181
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 182 KWAEDPFGVFA---------VILTPTRELALQIFEQIKAIS-APQSLKPILITGGTEMRP 231
Query: 389 QLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR I + I L R +LDE D L D
Sbjct: 232 QAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDV 291
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L S+ + Q L TAT V P+ + + M R + F+ +
Sbjct: 292 ETCLSALPPST--SRQTLLFTAT-----------VTPEVRALK--SMPRPANKPPIFVTE 336
Query: 499 CSGDQESDKTP---ETAF---LNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENIL 549
S + ++ P +T L + A L + E + +I+FCN+ T +E +L
Sbjct: 337 ISTENQATIPPTLKQTYLQVPLTHREAFLHTLLSTEANAPKPSIIFCNRTKTADLLERML 396
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
+R RV H+ L Q R AN+ F R+ AR+ LV TD A+RG+D V
Sbjct: 397 RRLGH-----RVTSLHSLLPQSERTANLSRF---RASAARI-LVATDVAARGLDIPSVSL 447
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
V+ FD PR+P +YV RVGRTAR AG G+A V + V L I +R
Sbjct: 448 VINFDVPRNPDDYVHRVGRTAR-AGREGEAVTLVGQRDVQLVLAIEDR 494
>gi|392947743|ref|ZP_10313371.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|334881219|emb|CCB82055.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
gi|339637663|emb|CCC16621.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392437023|gb|EIW14919.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 526
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 191/391 (48%), Gaps = 40/391 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG SD ++++++R + + IQA P V+EGK I Q+G+GKT A+ LP++QR
Sbjct: 3 FTELGLSDSLLKAVQRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 330 L--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +Q L +++PT ELA Q L K + VV GG +
Sbjct: 63 LDFNNHNIQAL-----------VVSPTRELAIQTQEEIFRLGKDERA-KVQVVYGGADIR 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ NL++ V++ TPGR + I+ G ++L +++ +LDE D + N F ++S+I
Sbjct: 111 RQIRNLKQNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLN-MGFLEDIESIIK 169
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT+P EI V+ + H + +E D DQ K
Sbjct: 170 QVPDERQTMLFSATMPPEIKRIGVQFMKEP--------HHVKIKSKEMTADTV-DQYYVK 220
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K + +L + TIVF T R+V+ + K + + H
Sbjct: 221 AKE---FEKFDIMTRLFDVQAPELTIVFGR---TKRRVDELSKGLEARG--YNAAGIHGD 272
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q+ R M++F K +L LV TD A+RG+D +GV HV +D P+DP YV R+
Sbjct: 273 LSQQRRTQIMRQF-----KAGKLDILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRI 327
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
GRT R AG G + FV ++ R++E+
Sbjct: 328 GRTGR-AGHKGVSLTFVTPNEMEYL-RVIEK 356
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 190/391 (48%), Gaps = 40/391 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG SD +++++ R + + IQA P V+EGK I Q+G+GKT A+ LP++QR
Sbjct: 3 FTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 330 L--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +Q L +++PT ELA Q L K + VV GG +
Sbjct: 63 LDFDNHNIQAL-----------VVSPTRELAIQTQEEIFRLGKDERA-KVQVVYGGADIR 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ NL++ V++ TPGR + I+ G ++L +++ +LDE D + N F ++S+I
Sbjct: 111 RQIRNLKQNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLN-MGFLEDIESIIK 169
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT+P EI V+ + H + +E D DQ K
Sbjct: 170 QVPDERQTMLFSATMPPEIKRIGVQFMKEP--------HHVKIKSKEMTADTV-DQYYVK 220
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E K + +L + TIVF T R+V+ + K + + H
Sbjct: 221 AKE---FEKFDIMTRLFDVQAPELTIVFGR---TKRRVDELSKGLEARG--YNAAGIHGD 272
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q+ R M++F K +L LV TD A+RG+D +GV HV +D P+DP YV R+
Sbjct: 273 LSQQRRTQIMRQF-----KAGKLDILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRI 327
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
GRT R AG G + FV ++ R++E+
Sbjct: 328 GRTGR-AGHKGVSLTFVTPNEMEYL-RVIEK 356
>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase [Acidiphilium cryptum JF-5]
gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
Length = 525
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 196/421 (46%), Gaps = 41/421 (9%)
Query: 235 WR---SGGSIH-------NLQYEPT--DCPKQRHKYSADGDFFSRKSFKELGCSDYMIES 282
WR G+ H L YE + C H+ S D + F LG ++ ++ +
Sbjct: 13 WRRHPPAGAFHAGRAPSGRLVYEASCHPCAAPSHRRSRD-ESAVLTDFTTLGLAEPLLRA 71
Query: 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342
+ Q++ P+ IQA + P ++EG + Q+G+GKT A++LP++ R+ + ++
Sbjct: 72 ISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRAC 131
Query: 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
R ++LAPT ELA+Q+ R+ K P ++V+ GG + Q ++ GVD+L+A
Sbjct: 132 ----RALVLAPTRELATQIADAARTYGKFTRPSVAVVI-GGAKPGPQARRMESGVDLLVA 186
Query: 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
TPGR + + G+++L + +LDE D + D F A++ +++ P Q + +AT+
Sbjct: 187 TPGRLLDHVAAGVIRLDAVETVVLDEADQML-DLGFIPAIRQIMAKLPRQRQAVMFSATM 245
Query: 463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
P I E D + ++ +E VD Q PE KK L
Sbjct: 246 PKPIRALAGEFLRDPR--------EVAVSVESKPVDRIDQQVLLLAPE----EKKDKLAW 293
Query: 523 LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
L+ V + IVF KV L+ + + H Q R + +F +
Sbjct: 294 LLADVAVERAIVFTRTKHGADKVTRHLE-----DAGIGAAAIHGNKSQGQRERALDQFRS 348
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642
R + LV TD A+RGID V HVV F+ P P YV R+GRTAR AG G A
Sbjct: 349 GRIR----VLVATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTAR-AGAEGVAISL 403
Query: 643 V 643
V
Sbjct: 404 V 404
>gi|397676010|ref|YP_006517548.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|395396699|gb|AFN56026.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 506
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 185/377 (49%), Gaps = 32/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S +++++ + P+ +QA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 16 SFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMID 75
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + PR +IL PT ELA+QV N K S+++ GG
Sbjct: 76 ILAH------GRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLI-GGVPMAE 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR + L + G + L + ++DE D + D F ++++ +
Sbjct: 129 QQAALEKGVDVLIATPGRLLDLFERGKILLSSCEMLVIDEADRML-DMGFIPDIETICTK 187
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDK 507
P + Q L +AT+P I KL + F + P IS P + Q + +
Sbjct: 188 LPTSRQTLLFSATMPPAI-KKLADRF-----LSNPKQIEISRPA-------TANTQINQR 234
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
E + +KK L ++ I+FCN+ T R++ L+ + V H
Sbjct: 235 LIEVSPRSKKKKLCDMLRAEKDHTAIIFCNRKTTVRQLATTLE-----QQGFSVGQIHGD 289
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R + ++ F + LV +D A+RG+D G+ HV FD P P +Y+ R+G
Sbjct: 290 MSQPERGSELERFKNGQIS----VLVASDIAARGLDVKGISHVFNFDVPTHPDDYIHRIG 345
Query: 628 RTARGAGGTGKAFIFVV 644
RT RG G +G+A FV
Sbjct: 346 RTGRG-GASGEALTFVT 361
>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
Length = 705
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 185/379 (48%), Gaps = 32/379 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +K+Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 109 QAFEESNFPDYVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 168
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + + P V+ILAPT ELA Q+ + R S C R+ + GG
Sbjct: 169 VHINHQP----RLNRGDGPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFGGSP 221
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 222 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 280
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 281 IEQIRPDRQVLMWSATWPKEV-QALAEDFLTDYIQINIGSLSLAANHNIRQIIEIC---Q 336
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E +K K S LL+ I SK I+F + T +KV++I K R +
Sbjct: 337 EHEKE------YKLSQLLREIGTERGSKMIIF---VETKKKVDDITKTIKRDG--WSAIS 385
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 386 IHGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSEDYI 441
Query: 624 RRVGRTAR-GAGGTGKAFI 641
R+GRT R + GT A+
Sbjct: 442 HRIGRTGRCQSAGTAYAYF 460
>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
Length = 539
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/385 (32%), Positives = 191/385 (49%), Gaps = 38/385 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + + +++ Q + +P+ IQA A P V+ G + A Q+G+GKT + LP++
Sbjct: 21 TFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILN 80
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L + S + P R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 81 RLM--PLATENTSPARHPVRALILTPTRELADQVAANVHTYAKF-TPLRSTVVYGGVDIN 137
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GV+++IATPGR + +++ + L ++ +LDE D + D F LQ +I+
Sbjct: 138 PQIQTLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRML-DMGFLPDLQRIIN 196
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P T Q L +AT EI KL + F +SP L E + S+
Sbjct: 197 LLPKTRQNLLFSATFSPEI-QKLAKSF------------MVSPTLIEV---ARRNATSEN 240
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCN-KIVTCRKVENILKRFDRKETRVRV 561
+ F +K+ A+ LI+ +S+ IVF N K+ T R L R KE V
Sbjct: 241 IKQVIFALDSEEDKRMAVCHLIQSKALSQVIVFSNTKLGTAR-----LARHLEKEG-VSS 294
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H Q R +++ F LV TD A+RG+D A + V+ +D P P +
Sbjct: 295 TAIHGDKTQIERTKSLEAFKAGEVT----VLVATDVAARGLDIADLPCVINYDLPTTPED 350
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGK 646
YV R+GRT R AG G A+ FVV +
Sbjct: 351 YVHRIGRTGR-AGAKGTAYSFVVKR 374
>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus marinus MC-1]
gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus marinus MC-1]
Length = 439
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 181/382 (47%), Gaps = 46/382 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L ++ +L + + P+ IQA A P ++ G+ + Q+G+GKT A+ LP++ +
Sbjct: 4 FASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILNK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q ++G + +PR +IL PT ELASQ+ N ++ VP VV GG ++ Q
Sbjct: 64 LSQ--IKG--RPAPNAPRALILTPTRELASQI-GNSIAVYGKHVPTTHTVVFGGVGKQPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVD+L+ATPGR + L+ E ++L ++ +LDE D + D F ++ +I
Sbjct: 119 IRALSRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEADRML-DMGFIHDIRRIIKVI 177
Query: 450 PVTAQYLFVTATLPVEIYN---------KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
P L +AT+P +I VEV P+ V RI+ + VD
Sbjct: 178 PAKRHTLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTV-----ERITQKV--LFVDKQ 230
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
NK+S L ++E + + +VF +V L + R+
Sbjct: 231 --------------NKRSLLKNVLEHESIEQVLVFTRTKHGANRVAEYLDKH-----RIA 271
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + F + K LV TD A+RGID AG+ HV+ FD P +
Sbjct: 272 SAAIHGNKSQSAREKALDGFRKGKLK----VLVATDIAARGIDVAGISHVINFDLPNESE 327
Query: 621 EYVRRVGRTARGAGGTGKAFIF 642
YV R+GRTAR AG G A F
Sbjct: 328 SYVHRIGRTAR-AGRDGNAISF 348
>gi|372275450|ref|ZP_09511486.1| ATP-dependent RNA helicase DeaD [Pantoea sp. SL1_M5]
gi|390436775|ref|ZP_10225313.1| ATP-dependent RNA helicase DeaD [Pantoea agglomerans IG1]
Length = 646
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI L + + ++
Sbjct: 177 IPADHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATMEVAEALERSGYN---------SAAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|343515196|ref|ZP_08752255.1| DNA and RNA helicase [Vibrio sp. N418]
gi|342798728|gb|EGU34326.1| DNA and RNA helicase [Vibrio sp. N418]
Length = 399
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 200/400 (50%), Gaps = 41/400 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++L + + +P+ IQ A P +++G+ + A Q+G+GKT ++LP++++
Sbjct: 3 FSKLGLSQPITDALTKLGYNKPTSIQIKAIPEILKGQDLLAAAQTGTGKTAGFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E Q + R +IL PT ELA QV R + +P S+ + GG +K Q
Sbjct: 63 LSKGETQRKKRI-----RALILTPTRELACQVEEKVRDYGQ-NLPLTSLAMYGGVDEKLQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + L + + + +LDE D + D F + ++
Sbjct: 117 KQALIEGVDVLVATPGRLLDLYGQHAVHFDEVEVLVLDEADRML-DMGFIEDINKILDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q+L +ATL NK+ E+ V P F + + +Q S K+
Sbjct: 176 PTDIQHLLFSATLS----NKVRELAKTA--VYNP-----------FEISIAANQASKKSI 218
Query: 510 ETAFL----NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
E + +KKSALL LI+++ +T++F I T + ++ +++ + F
Sbjct: 219 EQWLIAVDKDKKSALLSHLIKENDWDQTLIF---IETKHGAAKLAQQLEKR--GIEAEAF 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H+ Q R +++F + K +++ T +RGID G+ V+ +D P EYV
Sbjct: 274 HSGRSQAVRSQLLQDFKAGKIK----YMIATGVGARGIDIEGLTRVINYDLPFPADEYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
R+GRT R A +G+A FV + + M +R GH L
Sbjct: 330 RIGRTGR-ADASGEAISFV--SRDNFKNLCMIESRLGHLL 366
>gi|395781559|ref|ZP_10461977.1| hypothetical protein MCY_00374 [Bartonella rattimassiliensis 15908]
gi|395420992|gb|EJF87250.1| hypothetical protein MCY_00374 [Bartonella rattimassiliensis 15908]
Length = 467
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 195/383 (50%), Gaps = 36/383 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F +LG S+ +I ++K + P+ IQ+ P V++ K + Q+G+GKT +++LP
Sbjct: 4 SLKNFDDLGLSEKVINAVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGG 383
++ L + ++ + PR +IL PT E+A+QV N K G+ R V + GG
Sbjct: 64 MLTLLEK------GRARARMPRTLILEPTREIAAQVEEN---FDKYGINHRLNVALLIGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q L+ G DVLIATPGR + + G L L+ + ++DE D + D F ++
Sbjct: 115 VSFELQDRKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRML-DMGFIPDIE 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGD 502
+ +P T Q LF +AT+ EI KL + F V V + + ++LV SG
Sbjct: 174 QICKLTPFTRQTLFFSATMAPEI-TKLTKQFLHSPVSVEVTKASSTAATITQWLVK-SGH 231
Query: 503 QESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+ D K++ L +LI E + I+FCN+ + + +LK + V
Sbjct: 232 KAWD---------KRAVLRELIQNEGDELQNAIIFCNR---KKDISELLKSLIKYNFNVA 279
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
L H +DQ +R++ + +F ++ LV +D A+RG+D V HV +D P
Sbjct: 280 AL--HGDMDQYSRMSTLADFKNNKLT----LLVASDVAARGLDIPAVSHVFNYDVPTHAE 333
Query: 621 EYVRRVGRTARGAGGTGKAFIFV 643
+Y+ R+GRT R A +GKAF V
Sbjct: 334 DYIHRIGRTGR-ANRSGKAFTIV 355
>gi|143361556|sp|Q5QMN3.2|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
Length = 494
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 203/420 (48%), Gaps = 32/420 (7%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAM 297
S+ + E + ++R + + +G + + F+++G +Y+++ + + F+ P+ IQ+
Sbjct: 61 SVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQ 120
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
+P + G+ I ++GSGKTLAYLLP I + + + + P V++LAPT EL
Sbjct: 121 GWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL----APGDGPIVLVLAPTREL 176
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
A Q+ +S + GG + Q+ +LQ+GV+++IATPGR + +I+
Sbjct: 177 AVQIQQEATKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTN 235
Query: 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE--VFP 475
L + +LDE D + D FE ++ ++S Q L+ +AT P E+ +L +F
Sbjct: 236 LRRVTYLVLDEADRML-DMGFEPQIKKIVSQIRPDRQTLYWSATWPKEV-EQLARNFLFD 293
Query: 476 DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF 535
KV++G EE + + Q + E+ NK LL+ I S+ ++F
Sbjct: 294 PYKVIIGS---------EELKANHAISQHVEILSESQKYNKLVNLLEDIMDG--SRILIF 342
Query: 536 CNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT 595
+ C ++ L R D L H Q R + EF + +S + T
Sbjct: 343 MDTKKGCDQITRQL-RMDGWPA----LSIHGDKSQAERDWVLSEFKSGKSP----IMTAT 393
Query: 596 DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
D A+RG+D V +V+ +DFP +YV R+GRT R AG G A+ F A+ ++
Sbjct: 394 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTAANARFAKDLI 452
>gi|406934671|gb|EKD68890.1| hypothetical protein ACD_47C00384G0003, partial [uncultured
bacterium]
Length = 637
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/389 (31%), Positives = 189/389 (48%), Gaps = 40/389 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S+ + + F S IQA P ++ G+ I Q+G+GKT A+ +P++++
Sbjct: 6 FTELNISEKIQRAAADMGFEEASPIQAETIPILLAGRDLIGQAQTGTGKTAAFAIPILEK 65
Query: 330 LRQE--ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ E ELQ L +L PT EL QV R L+K + V GG
Sbjct: 66 IDHETKELQAL-----------VLCPTRELVIQVTEEFRRLTKYFFNLAIVPVYGGQEID 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ +++ TPGR M ++ ++L LR +LDE D + D F +++++
Sbjct: 115 RQIDALKRKPQIVVGTPGRLMDHMRRATIKLDKLRFVVLDEADEML-DMGFREDMETILK 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESD 506
+P Q + +AT+P +I +L + F + H++ +P +E+F
Sbjct: 174 DTPAERQTIMFSATMPEDI-AQLTKKFQKNPARIDVSCHKMNAPKIEQFYY--------- 223
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL-PFH 565
E +K AL +LI+ V +VFCN + ++ +LK TR + H
Sbjct: 224 ---ELLEKSKPEALARLIDFYGVKLALVFCNTKMRVDELVEVLK------TRGYLAEALH 274
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
L+Q R M F + + LV TD A RGID V+ V +D PRD +YV R
Sbjct: 275 GDLNQRMRDKVMSGFRSGLIE----ILVATDVAGRGIDVNDVEAVFNYDLPRDDEDYVHR 330
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRTAR AG +GKAF FV +Q+S +RI
Sbjct: 331 IGRTAR-AGKSGKAFTFVTSRQLSNLKRI 358
>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
4136]
Length = 452
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 189/374 (50%), Gaps = 28/374 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++++++ + P+ IQA A P VV G I Q+G+GKT A+ LP++
Sbjct: 3 FRALGLHENILKAIQEAGYSEPTPIQAAAIPQVVAGHDMIGIAQTGTGKTAAFTLPMLHL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q QG + + +ILAPT EL +Q+ N R+ +K +P + ++ GG ++ Q
Sbjct: 63 LAQLHGQGPLRGI----KALILAPTRELVAQIHDNVRAYAKH-LPLKVAMIFGGVGERPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ G D++IATPGR + L+ + +L +LDE D + D F +++ ++ +
Sbjct: 118 IEALRAGTDLVIATPGRLIDLMGQRHGNFNSLEFLVLDEADRML-DMGFLPSIKRIVKAL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +ATL EI E K V + + +F+ + P
Sbjct: 177 PKKRQTLLFSATLSKEIEALTHEFLNHPKTVQIGKRSNPAESVTQFVYEV---------P 227
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+ + K ALL + K P ++ +++ + I + DR ++ + H+
Sbjct: 228 K----HLKPALLVHLLKDPAFNMVLVFSRM--KHGADRIARHLDRYG--IKTVTLHSNRT 279
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q RL + +F +S AR+ LV TD A+RGID G+ HVV +DFP +YV R+GRT
Sbjct: 280 QNQRLRALADF---KSGAARV-LVATDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRT 335
Query: 630 ARGAGGTGKAFIFV 643
R A G A F+
Sbjct: 336 GR-AHAVGDAISFI 348
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV+VLIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNATATN 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRALKQVIVFCNSKIGASRLARQIER-----DGIVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D + V+ FD P +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIVELPAVINFDLPFSAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 185/377 (49%), Gaps = 35/377 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV+VLIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNATATN 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ + A +K++A+++LI + + IVFCN + ++ ++R +
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRALKQVIVFCNSKIGASRLARQIER-----DGIVASA 286
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+ + F + LV TD A+RG+D + V+ FD P +YV
Sbjct: 287 IHGDRSQSERMQALDAFKRGEIEA----LVATDVAARGLDIVELPAVINFDLPFSAEDYV 342
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 343 HRIGRTGR-AGASGDAL 358
>gi|342217228|ref|ZP_08709875.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341588118|gb|EGS31518.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 548
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 192/381 (50%), Gaps = 39/381 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L S ++ ++ F RPS++Q P +++G + Q+G+GKT ++ +P+I++
Sbjct: 3 FNKLNLSKELLRAIDDMGFERPSEVQEATIPYILQGNDILAQAQTGTGKTASFGIPMIEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++ ++L+ SP+ ++L PT ELA QV + L+K + + GG Q
Sbjct: 63 IQDKQLK--------SPQGLVLVPTRELARQVTEELKKLAKYKRFIKLAAIYGGADMGKQ 114
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L+ G +++ TPGR M +K LQL L +LDE D +F D F ++++I +
Sbjct: 115 LSQLRNGTSIVVGTPGRIMDHMKRKSLQLDQLEFLVLDEADEMF-DMGFRDDMKTIIEKT 173
Query: 450 PVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q LF +AT I ++KL + P K V+ + + ++ + E ++
Sbjct: 174 NPNRQTLFFSATFDNNIKDFSKLYQDKP--KKVILEKKELTAEKIHQYYL------ELNR 225
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCN--KIVTCRKVENILKRFDRKETRVRVLPFH 565
+T LN+ L LI + +K+I+FCN K+V +VE K + +V H
Sbjct: 226 NMKTEILNR----LLLIHRP--NKSIIFCNTKKMVDSLEVEMAQKGY-------QVASLH 272
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+ Q +R MK+F L+ TD A+RG+D + +D V +D P+ YV R
Sbjct: 273 GDMRQSSRDQVMKKFRDGSID----LLIATDVAARGLDVSDIDLVFNYDLPQQSEYYVHR 328
Query: 626 VGRTARGAGGTGKAFIFVVGK 646
+GRTAR AG G +F FV K
Sbjct: 329 IGRTAR-AGKKGISFTFVTNK 348
>gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|440758704|ref|ZP_20937863.1| Cold-shock DEAD-box protein A [Pantoea agglomerans 299R]
gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|436427632|gb|ELP25310.1| Cold-shock DEAD-box protein A [Pantoea agglomerans 299R]
Length = 642
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI L + + ++
Sbjct: 177 IPADHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNS---------AAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|449458179|ref|XP_004146825.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Cucumis
sativus]
gi|449476660|ref|XP_004154799.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Cucumis
sativus]
Length = 505
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 199/406 (49%), Gaps = 30/406 (7%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+QR + + +G + KSF+++G DY+++ + + F P+ IQ+ +P ++G+ I
Sbjct: 82 RQRREITVEGRDVPKPVKSFRDVGFPDYVMQEIAKAGFTEPTPIQSQGWPMALKGRDLIG 141
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKTLAYLLP I + + + S P V++LAPT ELA Q+
Sbjct: 142 IAETGSGKTLAYLLPAIVHVNAQPIL----SPGDGPIVLVLAPTRELAVQIQQEATKFGA 197
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
++ V GG + Q+ +LQ+GV+++IATPGR + +++ L + +LDE D
Sbjct: 198 SS-KIKNTCVYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEAD 256
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE-VFPDCKVVMGPGMHRIS 489
+ D F+ ++ ++S Q L+ +AT P E+ + ++ KV++G S
Sbjct: 257 RML-DMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIG------S 309
Query: 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENIL 549
P L+ + + Q D E NK LL+ I S+ ++F + C ++ L
Sbjct: 310 PDLK---ANHAIRQHVDIVSENQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQL 364
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
R D L H Q R + EF + +S + TD A+RG+D V +
Sbjct: 365 -RMDGWPA----LSIHGDKSQAERDWVLSEFRSGKSP----IMTATDVAARGLDVKDVKY 415
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
V+ +DFP +YV R+GRT R AG G A+ F A+ ++
Sbjct: 416 VINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTAANARFAKELI 460
>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
gi|158433189|gb|EDP11478.1| DEAD/DEAH box helicase [Eubacterium dolichum DSM 3991]
Length = 472
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 184/377 (48%), Gaps = 33/377 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+ G ++E+L + +P +Q P ++ + I+ ++GSGKT ++ +P++Q+
Sbjct: 3 FKDFGLEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E P+ +ILAPT ELA Q+ + + +S+ + G F + Q
Sbjct: 63 LIWNE---------KLPQSLILAPTRELAMQIQTEFDQIG-AKKRIKSLAIYGKFPFRFQ 112
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++LQ+ V+ ATPGR + ++E ++R ++DE DI+ D F +++++
Sbjct: 113 KQDLQQRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIML-DMGFLDEVEAVLDYL 171
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P +AT+P EI D + + +E ++ +
Sbjct: 172 PKKRTTALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQ------- 224
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K++ALL L+ K V I+F T +VENI + K +RV H L
Sbjct: 225 -----DKETALLHLLGKETVESAILFVR---TQERVENIYQVL--KAHHIRVTKLHGGLL 274
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
QE RLAN+K F RS E R+ LV +D A+RGID A + HV+ DFP Y+ R+GRT
Sbjct: 275 QEERLANLKAF---RSGEKRI-LVASDVAARGIDIADISHVINVDFPDKKETYIHRLGRT 330
Query: 630 ARGAGGTGKAFIFVVGK 646
AR +GKA FV +
Sbjct: 331 AR-KDTSGKAISFVTAR 346
>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
Length = 539
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 184/378 (48%), Gaps = 28/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E DY+ + +K + P+ IQA +P + GK+ + Q+GSGKTLAY+LP I
Sbjct: 107 QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 166
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + P ++LAPT ELA Q+ R+ V GG ++
Sbjct: 167 VHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKR 221
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV+++IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 222 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIE 280
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESD 506
Q L +AT P E+ KL E + + + G ++S +VD + E +
Sbjct: 281 QIRPDRQTLMWSATWPKEV-KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKE 339
Query: 507 KTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
NK + LLQ I +S P +KTI+F + T RK ENI + R +
Sbjct: 340 --------NKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRRYGWPAVCM-- 386
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q+ R + +F R+ LV TD A+RG+D G+ +V+ FD+P +Y+
Sbjct: 387 HGDKTQQERDEVLYQFKEGRAS----ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 442
Query: 625 RVGRTARG-AGGTGKAFI 641
R+GRT R + GT AF
Sbjct: 443 RIGRTGRSKSKGTSYAFF 460
>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 465
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 205/419 (48%), Gaps = 38/419 (9%)
Query: 253 KQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD 312
+Q ++ + + S SF+ G + +++++ F PS IQA P V+EG+ I
Sbjct: 3 EQTNRQAEERKVESMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQA 62
Query: 313 QSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSK 370
Q+G+GKT A+ +P+++R+ S PRV ++L PT ELA QV R ++K
Sbjct: 63 QTGTGKTAAFGIPLVERV------------STEPRVQAIVLTPTRELAIQVAGEIRKIAK 110
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
RS+ + GG Q+ L++GV ++I TPGR + I G L L ++R +LDE D
Sbjct: 111 YK-RVRSVPIYGGQSIVHQIRALKQGVQIVIGTPGRVLDHIHRGTLSLGDVRMVVLDEAD 169
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP 490
+ D F +++++ +P Q + +AT P E+ + D + + P
Sbjct: 170 EML-DMGFIDDIEAILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVP 228
Query: 491 GLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILK 550
+ DQ K E NK +L ++++ + I+FC T R V+++++
Sbjct: 229 QI---------DQVCYKVLER---NKLDSLCRIVDSEDIQLGIIFCR---TKRGVDDLVE 273
Query: 551 RFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHV 610
+ L H L Q R M++F R E L LV TD A+RG+D V HV
Sbjct: 274 ALLARGYLADGL--HGDLSQAQRDRVMRKF---RKNEIEL-LVATDVAARGLDVDDVTHV 327
Query: 611 VLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
+ +D P+DP YV R+GRT R AG G A V ++ L ++I ++ + +VPS
Sbjct: 328 INYDVPQDPESYVHRIGRTGR-AGKRGLAITLVTPREYKLLKQIEREIKQKITVREVPS 385
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/381 (30%), Positives = 188/381 (49%), Gaps = 43/381 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S ++++++ + + +PS IQ P V+EGK + A Q+G+GKT A+ LP++
Sbjct: 2 SFKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + + + + + +IL PT ELA+Q+ N RS K + ++ VV GG
Sbjct: 62 M-----FENTTPAAANNVKALILTPTRELAAQIDENIRSYGKH-LNLKTQVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR M L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QMIKLRRGVDILVATPGRLMDLYQQRAVKFSQLEILVLDEADRML-DMGFIHDIKKIMAI 174
Query: 449 SPVTAQYLFVTAT-------LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
P Q L +AT L I N VE+ + K + + +E+ ++
Sbjct: 175 LPKKRQNLLFSATFSDDIRKLAKTIVNNPVEISVNTK-------NSTATAVEQVIIPV-- 225
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
DKT NK + L LI ++ + +VFC T + + K +K
Sbjct: 226 ----DKT------NKNTLLSHLIIENNWHQVLVFCR---TKHGADRLAKFLIKKNISASA 272
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+ H Q R + +F + + + L TD A+RGID + +V FD P P +
Sbjct: 273 I--HGNKSQGARTRALADFKSGKVQ----ILAATDIAARGIDINELPQIVNFDLPNIPED 326
Query: 622 YVRRVGRTARGAGGTGKAFIF 642
YV R+GRT R AG TG A+ F
Sbjct: 327 YVHRIGRTGR-AGATGHAYSF 346
>gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7]
gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7]
Length = 418
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 196/382 (51%), Gaps = 35/382 (9%)
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
PS IQ A P ++ G+ ++G+GKT A+ LP++Q+L L+ S+ + + +I
Sbjct: 6 PSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLY---LRDESEKYPRTIKALI 62
Query: 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
LAPT ELA Q+ +++ V +S V+ GG RQ +Q+ + G+DVLIATPGR + L
Sbjct: 63 LAPTRELAIQINETFEAMNP-QVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLIDL 121
Query: 411 IKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470
+G++ L ++ +LDE D + D F ++ ++ P Q + +ATLP EI + +
Sbjct: 122 YNQGLVDLKHVEYLVLDEADRML-DMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLV 180
Query: 471 VEVFPD-CKVVMGPG---MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
++ D K+++ G + +I+ L + VD +NK L++L+E
Sbjct: 181 SDLLNDPLKIMISSGNVTVEKINQSL--YFVDK--------------VNKAKLLIKLLEN 224
Query: 527 SPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSK 586
+ IVF + T R V+ + K+ + + + H Q R+ + F + +
Sbjct: 225 PQIYNAIVF---VRTKRNVDTLCKKLIKAQ--ITCEGIHGDKSQNARVRALNNFKNDKVR 279
Query: 587 EARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGK 646
LV +D A+RGID + HV+ FD P YV R+GRTAR AG +G+A F +
Sbjct: 280 ----VLVASDIAARGIDIDELTHVINFDLPDQAENYVHRIGRTAR-AGASGEAITFCSFQ 334
Query: 647 QVSLAQRIMERNRKGHPLHDVP 668
+ +L + I + + P+ D P
Sbjct: 335 EKALLKDIQKFINQDIPVVDNP 356
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 185/376 (49%), Gaps = 35/376 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L S S SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASHSASPARHPVRALILTPTRELADQVAENVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E +E
Sbjct: 190 IINLLPKQRQNLLFSATFSPEI-KKLAASFQNNPVTI--EVARSNATAENVSQTIYKVEE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ K +F+ ++ L Q+ IVF N + ++ L V+
Sbjct: 247 AAKADAVSFIIRQRELKQV---------IVFSNTKIGASRLARTL-----VAEGVKASAI 292
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R+A ++ F + + LV TD A+RG+D A + V+ +D P + +YV
Sbjct: 293 HGDKTQSERMAALESFKQGQIE----VLVATDVAARGLDIAELPCVINYDLPYNAEDYVH 348
Query: 625 RVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 349 RIGRTGR-AGASGDAI 363
>gi|358449520|ref|ZP_09160004.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357226275|gb|EHJ04756.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 440
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 197/393 (50%), Gaps = 35/393 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RL------GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILAL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP-GLEEFLVDCSGDQESDK 507
P Q L +AT EI L E D V + S +++ + D+
Sbjct: 174 LPAKRQNLLFSATFSNEIRT-LAEGLLDNPVQVEVAARNTSAENIKQSVYPV------DQ 226
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ +TA L+K L+ + + +VF T + ++ ++ + H
Sbjct: 227 SQKTALLSK------LVRDNSWDQVLVFTR---TKHGANRLTQKLEKDG--ITAAAIHGN 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F ++ E R+ LV TD A+RG+D + VV F+ P P +YV R+G
Sbjct: 276 KSQGARTRALADF---KAGEVRV-LVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVV---GKQVSLAQRIMER 657
RT R AG +G A V GK ++ +R++++
Sbjct: 332 RTGR-AGESGHALSLVSADEGKMLAGIERLIKK 363
>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 505
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/407 (29%), Positives = 199/407 (48%), Gaps = 32/407 (7%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+QR + + +G + KSF+++G DY++E + R F+ P+ IQA +P ++G+ I
Sbjct: 82 RQRREITVEGRDVPKPVKSFRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIG 141
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKTLAYLLP I + + + + P V++LAPT ELA Q+ +K
Sbjct: 142 IAETGSGKTLAYLLPAIVHVNAQPIL----APGDGPIVLVLAPTRELAVQIQQEA---TK 194
Query: 371 CGVPFR--SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
G R + + GG + Q+ +LQ+GV+++IATPGR + +++ L + +LDE
Sbjct: 195 FGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDE 254
Query: 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI 488
D + D F+ ++ ++S Q L+ +AT P E+ +L F + P +++
Sbjct: 255 ADRML-DMGFDPQIRKIVSQIRPDRQTLYWSATWPKEV-EQLARQF-----LYNP--YKV 305
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENI 548
G + + + Q D E NK LL+ I S+ ++F + C ++
Sbjct: 306 VIGSADLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQ 363
Query: 549 LKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVD 608
L R D L H Q R + EF +S + TD A+RG+D V
Sbjct: 364 L-RMDGWPA----LSIHGDKSQAERDWVLSEFKAGKSP----IMTATDVAARGLDVKDVK 414
Query: 609 HVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
V+ +DFP +YV R+GRT R AG G A+ F A+ ++
Sbjct: 415 FVINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTASNARFAKELI 460
>gi|432328452|ref|YP_007246596.1| DNA/RNA helicase, superfamily II [Aciduliprofundum sp. MAR08-339]
gi|432135161|gb|AGB04430.1| DNA/RNA helicase, superfamily II [Aciduliprofundum sp. MAR08-339]
Length = 450
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 38/387 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E+ S + L+ F P+++Q P ++G I+ ++GSGKTLA+L+P+ ++
Sbjct: 3 FDEMDISIGTKKVLELHGFKEPTEVQESVIGPAIDGMDLIVQSKTGSGKTLAFLIPIFEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + GL ++L PT ELA QV R L+K G ++V+ GG + Q
Sbjct: 63 LNR----GLE--------AIVLVPTRELAQQVDRVARILAK-GHGKSTVVIYGGVSMENQ 109
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ V+I TPGR M L++ G L L ++ +LDE D + D F ++ ++S +
Sbjct: 110 IRGLKHA-SVVIGTPGRVMDLMRRGYLDLSRIKIFVLDEADRML-DMGFIEDIRWILSKA 167
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P EI N + + ++ + + +F V
Sbjct: 168 PREKQMMLFSATMPQEIINLARHYMSNPEKIILSADEITAENVSQFYV------------ 215
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E +NK + L LI K +VFCN + V IL+++ R H +
Sbjct: 216 EVGEINKIAKLSSLIINEG-GKYLVFCNTKRNTKSVAEILQKYG-----FRAFALHGDMR 269
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q +R M F + L+ TD A+RGID G+ HVV +D P+ P +YV R+GRT
Sbjct: 270 QASRSRTMDAFKQGKIN----ILISTDVAARGIDVHGITHVVNYDVPQYPKDYVHRIGRT 325
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIME 656
R GKA FV +++ +RI E
Sbjct: 326 GR-LDARGKAITFVSREEMEYFRRIEE 351
>gi|308189119|ref|YP_003933250.1| cold-shock DEAD box protein A [Pantoea vagans C9-1]
gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
Length = 640
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 194/403 (48%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L+L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI + + + ++
Sbjct: 177 IPAGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSM-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYN---------SAAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
Length = 470
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/397 (31%), Positives = 200/397 (50%), Gaps = 45/397 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ +I++++ + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 7 SFDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R VV GG
Sbjct: 67 LLEK------GRARARMPRTLILEPTRELAAQVQEN---FDKYGLNHRLNVVLLIGGVSF 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L++G DVLIATPGR + + G L LI ++DE D + D F ++ +
Sbjct: 118 EDQNRKLEQGADVLIATPGRLLDHFERGKLLLIGTEILVIDEADRML-DMGFIPDIERIC 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+P T Q LF +AT+ EI KL E F P C V + + + LV SG +
Sbjct: 177 KLTPFTRQTLFFSATMAPEI-TKLTEQFLHSPICVEVTKAS--STATTITQRLVK-SGSK 232
Query: 504 ESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
D K++ L +LI E + I+FCN+ ++ L +++ V
Sbjct: 233 AWD---------KRAVLRELIDNEGDELKNAIIFCNRKKDISELFRSLTKYN-----FSV 278
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H +DQ +R+ + +F K+ +L LV +D A+RG+D V HV +D P
Sbjct: 279 GALHGDMDQHSRMNTLADF-----KDNKLTLLVASDVAARGLDIPDVSHVFNYDVPTHAE 333
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVG---KQVSLAQRI 654
+Y+ R+GRT R A +GKAF V K +S ++I
Sbjct: 334 DYIHRIGRTGR-AKRSGKAFTIVTHDDQKYISAIEKI 369
>gi|380027508|ref|XP_003697465.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 607
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 192/393 (48%), Gaps = 32/393 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-V 326
+ F+E Y++E + +Q + +P+ IQA +P + G+ + Q+GSGKTL Y+LP +
Sbjct: 113 QYFEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGSGKTLGYVLPAI 172
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV--LSNCRSLSKCGVPFRSMVVTGGF 384
+ + Q L S P +ILAPT ELA Q+ ++NC GV R+ + GG
Sbjct: 173 VHIIHQPRL-----SNGDGPIALILAPTRELAQQIQEVANCFG-EAAGV--RNTCIFGGA 224
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++
Sbjct: 225 PKGPQAHDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRK 283
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
+I Q L +AT P E+ L E F + + G +S +VD +
Sbjct: 284 IIEQIRPDRQVLMWSATWPKEV-RALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEF 342
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K LLQ I +KTI+F + T RKV++I + R + L
Sbjct: 343 EKDL--------KLYRLLQEIGNEKENKTIIF---VETKRKVDDITRNIRRDG--WQALS 389
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +Q+ R ++EF + R+ LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 390 IHGDKNQQERDHVLQEFKSGRAP----ILVATDVAARGLDVDDVKYVINFDYPSSSEDYI 445
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R TG A+ F + A ++E
Sbjct: 446 HRIGRTGR-RRQTGTAYAFFTSHNMKHAGDLIE 477
>gi|343509249|ref|ZP_08746533.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342805016|gb|EGU40296.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
Length = 399
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/400 (29%), Positives = 200/400 (50%), Gaps = 41/400 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++L + + +P+ IQ A P +++G+ + A Q+G+GKT ++LP++++
Sbjct: 3 FSKLGLSQPITDALTKLGYNKPTSIQIKAIPEILKGQDLLAAAQTGTGKTAGFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E Q + R +IL PT ELA QV R + +P S+ + GG +K+Q
Sbjct: 63 LSKGETQRKKRI-----RALILTPTRELACQVEEKVRDYGQ-NLPLTSLAMYGGVDEKSQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + L + + + +LDE D + D F + ++
Sbjct: 117 KQALIEGVDVLVATPGRLLDLYGQHAVHFDEVEVLVLDEADRML-DMGFIEDINKILDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q+L +ATL NK+ E+ V P F + + +Q S K+
Sbjct: 176 PTDIQHLLFSATLS----NKVRELAKTA--VYNP-----------FEISIAANQASKKSI 218
Query: 510 ETAFL----NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
E + +KKSALL LI+++ +T++F I T + ++ +++ + F
Sbjct: 219 EQWLISVDKDKKSALLSHLIKENDWDQTLIF---IETKHGAAKLAQQLEKRG--IEAEAF 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H+ Q R +++F + K +++ T +RGID G+ V+ +D P EYV
Sbjct: 274 HSGRSQAVRSQLLQDFKAGKIK----YMIATGVGARGIDIEGLTRVINYDLPFPADEYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
R+GRT R A G+A FV + + M +R GH L
Sbjct: 330 RIGRTGR-ADARGEAISFV--SRDNFKNLCMIESRLGHLL 366
>gi|409422582|ref|ZP_11259673.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
HYS]
Length = 443
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 201/400 (50%), Gaps = 28/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L+R ++ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAKLGLIEPLLRALERLSYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G +K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---TLEG-AKVASNSVRALVLVPTRELAEQVHANIREYAEH-LPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+D+L+ATPGR + L ++ ++ L+ +LDE D + D F L+++ ++
Sbjct: 117 QMMKLRKGIDLLVATPGRLLDLFRQNAVKFNQLQALVLDEADRML-DLGFAEELRAVYAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D + + + +++++V + +
Sbjct: 176 LPARRQTLLFSATFSDEIRQLAAQTLNDPLSIEVSPRNVTASTVKQWIVPV----DKKRK 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
PE L+ K + +VF T V+ +++R + V H
Sbjct: 232 PEL--------FSHLMRKQRWKQVLVFAK---TRNGVDQLVERL--RGQGVNADGIHGDK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q TR + F +++E ++ LV TD A+RG+D + VV FD P +Y+ R+GR
Sbjct: 279 PQATRQRALDSF---KAREIQI-LVATDVAARGLDIDDLPLVVNFDLPIVAEDYIHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
T R G +G+A V +V L I RK P H+ P
Sbjct: 335 TGR-KGNSGEAISLVCADEVQLLSAIETLTRKTLPRHEEP 373
>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 686
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 181/384 (47%), Gaps = 26/384 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G DY++E +Q F +P+ IQA P + G+ + Q+GSGKTLAY+ P +
Sbjct: 117 TFGDCGLPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAYVAPALV 176
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ +E + P +ILAPT ELA Q+ + + V GG +
Sbjct: 177 HIQHQE----TVHRGDGPIALILAPTRELAQQIQQVANDFGQR-TNTNNTCVFGGAPKGP 231
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++ ++
Sbjct: 232 QIRDLERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRML-DMGFEPQIRKIMGQ 290
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + + + G +S +VD D E D+
Sbjct: 291 IRPDRQVLMWSATWPKEVRN-LAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQ 349
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
K LL I +KTIVF + T R+V++I + R R + H
Sbjct: 350 --------KLMKLLTEISAEAETKTIVF---VETKRRVDDITRSICRNG--WRAVSIHGD 396
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R + F R LV TD A+RG+D V V+ +D+P + +YV R+G
Sbjct: 397 KSQQERDYVLNAFRNGRQG----ILVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIG 452
Query: 628 RTARGAGGTGKAFIFVVGKQVSLA 651
RT R + TG A+ + A
Sbjct: 453 RTGR-SNNTGTAYTLFTNSNANKA 475
>gi|403268867|ref|XP_003926484.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Saimiri
boliviensis boliviensis]
Length = 586
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 180/361 (49%), Gaps = 30/361 (8%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E++K+ F +P+ IQA A+P V++G I Q+G+GKTL YL+P L +LQ
Sbjct: 191 VMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---DLQPT 247
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K P +++L PT ELA QV C S G FRS+ V GG + Q+E L++GVD
Sbjct: 248 VKGQRNRPGMLVLTPTRELALQVEGECGKYSYKG--FRSVCVYGGGSRDEQIEELRKGVD 305
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L N+ +LDE D + D FE + ++ Q +
Sbjct: 306 IIIATPGRLNDLQMNNFVNLKNITYLVLDEADKML-DMGFEPQIMKILLDVRPDRQTVMT 364
Query: 459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518
+AT P ++ +L + + +++ G L+ V T E +++ ++
Sbjct: 365 SATWPRSVH-RLAQSYLKEPMLVYVGT------LDLVAVSSVKQNIIVTTEEEKWIHIQT 417
Query: 519 ALLQLIEKSPVSKTIVFCNKIVTCRKV--ENILKRFDRKETRVRVLPFHAALDQETRLAN 576
L + SP K IVF ++ + E IL+ V H +Q R
Sbjct: 418 FLQSM---SPTDKVIVFVSRKAVADHLSSELILENMS-------VESLHGDREQRDREKA 467
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
++ F T + + L+ TD ASRG+D + HV FDFPR+ EYV R+GRT R AG T
Sbjct: 468 LENFKTGKVR----ILIATDLASRGLDVHDITHVYNFDFPRNIEEYVHRIGRTGR-AGRT 522
Query: 637 G 637
G
Sbjct: 523 G 523
>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
25986]
gi|133775654|gb|EBA39474.1| DEAD/DEAH box helicase [Collinsella aerofaciens ATCC 25986]
Length = 749
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 195/396 (49%), Gaps = 41/396 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG SD M+ +++ + P+ +QA + P V+EG+ + A Q+G+GKT A+LLP +
Sbjct: 47 AFDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMN 106
Query: 329 RLRQ------------EELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSKCGV 373
L + +K G+ P ++++ PT ELA Q+ ++
Sbjct: 107 NLEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADV-T 165
Query: 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433
++ V GG K Q L+ G D+L+ATPGR + LI++G L ++ +LDE D +
Sbjct: 166 GHVAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRML 225
Query: 434 NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGL 492
D F A++ ++ +P Q L +ATL E ++ ++ D +V + P + +
Sbjct: 226 -DMGFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATS-TADTV 283
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552
++F+ S + +++ PE FL K+ +TIVF + T + ++ +R
Sbjct: 284 DQFVFPVSIEAKNNLLPE--FLKKEGP----------ERTIVF---MRTKHRADSCCRRL 328
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
+RK ++ H Q R + F LV TD +RGID + V +VV
Sbjct: 329 ERKG--IKAAAIHGNRSQAQRERALSAFRDGTVD----VLVATDVLARGIDISDVRYVVN 382
Query: 613 FDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648
FD P +P++Y+ R+GRT R AG G A FV + V
Sbjct: 383 FDVPAEPTDYIHRIGRTGR-AGELGWAITFVTEQDV 417
>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|339301744|ref|ZP_08650830.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|417005047|ref|ZP_11943640.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|421146787|ref|ZP_15606490.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|341576860|gb|EGS27268.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|401686494|gb|EJS82471.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 528
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 186/375 (49%), Gaps = 35/375 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S ++ ++++ F+ PS IQ M P +EGK I Q+G+GKT A+ LP + +
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
+ E+ + + +I+APT ELA Q + GV RS V GG +
Sbjct: 63 IHTED---------NTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRS--VYGGSSIEK 111
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ G V++ TPGR + LIK L+L ++ ILDE D + N F ++++IS
Sbjct: 112 QIKALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLN-MGFLEDIEAIISR 170
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I V+ D + V + ++++ V +++ D
Sbjct: 171 VPEARQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFD-- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ +L++ +IVF T R+V+ + + + R + H L
Sbjct: 229 ----------TMTRLMDVDQPELSIVFGR---TKRRVDELTRGLKLRGFRAEGI--HGDL 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ RL +++F LV TD A+RG+D +GV HV +D P+DP YV R+GR
Sbjct: 274 DQNKRLRVIRDFKNDHID----ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGR 329
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G++ FV
Sbjct: 330 TGR-AGKSGQSITFV 343
>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 541
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 199/406 (49%), Gaps = 38/406 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF+ G + +++++ F PS IQA P V+EG+ I Q+G+GKT A+ +P
Sbjct: 15 SMSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIP 74
Query: 326 VIQRLRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
+++R+ S PRV ++L PT ELA QV R ++K RS+ + GG
Sbjct: 75 LVERV------------STEPRVQAIVLTPTRELAIQVAGEIRKIAKYK-RVRSVPIYGG 121
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L++GV ++I TPGR + I G L L ++R +LDE D + D F ++
Sbjct: 122 QSIVHQIRALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEML-DMGFIDDIE 180
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ +P Q + +AT P E+ + D + + P + DQ
Sbjct: 181 AILRETPSDRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQI---------DQ 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K E NK +L ++++ + I+FC T R V+++++ + L
Sbjct: 232 VCYKVLER---NKLDSLCRIVDSEDIQLGIIFCR---TKRGVDDLVEALLARGYLADGL- 284
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R M++F R E L LV TD A+RG+D V HV+ +D P+DP YV
Sbjct: 285 -HGDLSQAQRDRVMRKF---RKNEIEL-LVATDVAARGLDVDDVTHVINYDVPQDPESYV 339
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
R+GRT R AG G A V ++ L ++I ++ + +VPS
Sbjct: 340 HRIGRTGR-AGKRGLAITLVTPREYKLLKQIEREIKQKITVREVPS 384
>gi|261201117|ref|XP_002626959.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
gi|239594031|gb|EEQ76612.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
gi|239607095|gb|EEQ84082.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ER-3]
Length = 553
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 127/408 (31%), Positives = 194/408 (47%), Gaps = 54/408 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + +++ SL RP+ IQ P +++G+ CI ++GSGKT+A+ P++Q
Sbjct: 122 SFASLGLAPWLVGSLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAFAAPILQ 181
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ ++ + VIL PT ELA Q+ +++S + +++TGG +
Sbjct: 182 KWAEDPFGVFA---------VILTPTRELALQIFEQIKAIS-APQSLKPILITGGTEMRP 231
Query: 389 QLENLQEGVDVLIATPGRFMFLI----KEGILQLINLRCAILDEVDILFND------EDF 438
Q L + ++IATPGR I + I L R +LDE D L D
Sbjct: 232 QAIALSQRPHIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDV 291
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
E L +L S+ + Q L TAT V P+ + + M R + F+ +
Sbjct: 292 ETCLSALPPST--SRQTLLFTAT-----------VTPEVRALK--SMPRPANKPPIFVTE 336
Query: 499 CSGDQESDKTP---ETAF---LNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVENIL 549
S + ++ P +T L + A L + E + +I+FCN+ T +E +L
Sbjct: 337 ISTENQATIPPTLKQTYLQVPLTHREAFLHTLLSTEANAPKPSIIFCNRTKTADLLERML 396
Query: 550 KRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDH 609
+R RV H+ L Q R AN+ F R+ AR+ LV TD A+RG+D V
Sbjct: 397 RRLGH-----RVTSLHSLLPQSERTANLSRF---RASAARI-LVATDVAARGLDIPSVSL 447
Query: 610 VVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
V+ FD PR+P +YV RVGRTAR AG G+A V + V L I +R
Sbjct: 448 VINFDVPRNPDDYVHRVGRTAR-AGREGEAVTLVGQRDVQLVLAIEDR 494
>gi|336124562|ref|YP_004566610.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335342285|gb|AEH33568.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 430
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 185/385 (48%), Gaps = 34/385 (8%)
Query: 263 DFFS---RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
DF + R F LG SD +++++ + P+ IQ A P ++ GK+ I A Q+G+GKT
Sbjct: 11 DFLTLRARMPFSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKT 70
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
+++LP++Q L Q Q + R +ILAPT ELA QV N +K +P +
Sbjct: 71 ASFVLPILQMLSQGTTQRAKRV-----RALILAPTRELALQVEENVTQYAKY-LPLTCLA 124
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
+ GG + Q + L EGVD+LIATPGR + + + + L ++DE D + D F
Sbjct: 125 MYGGVDSQKQKQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRML-DMGFI 183
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+ ++ P+ Q L +ATL + D + G +R +E++++
Sbjct: 184 EDINKIVDRLPLNRQNLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWIITV 243
Query: 500 SGDQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
DQ KSALL LI ++ + ++F K+ + L++
Sbjct: 244 DKDQ-------------KSALLSHLITENQWQQAMIFIETKHGAAKLASQLEK-----RG 285
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
+ FH+ QE R + +F + + FL+ T A+RGID ++ VV +D P
Sbjct: 286 IAAEAFHSGRSQEVREKLLADFKAGKLQ----FLIATGVAARGIDIDNLERVVNYDLPYP 341
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFV 643
Y+ R+GRT R AG TG+A V
Sbjct: 342 AENYIHRIGRTGR-AGATGEAISLV 365
>gi|242798281|ref|XP_002483137.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
gi|218716482|gb|EED15903.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
10500]
Length = 591
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 187/380 (49%), Gaps = 35/380 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL SD +E++K F ++IQ A PP++ G+ + A ++GSGKTLA+L+P I
Sbjct: 114 FTELNLSDRTLEAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAFLIPAI-- 171
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E L L V+IL+PT ELA Q+ R L + +V+ GG ++ +
Sbjct: 172 ---ELLHSLKFKPRNGTGVLILSPTRELALQIWGVARQLLEKHSQTHGIVM-GGANRRAE 227
Query: 390 LENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVD----ILFNDEDFEVALQ 443
E L++GV++L+ATPGR + ++ +G + NLR ++DE D I F DE ++
Sbjct: 228 AEKLEKGVNLLVATPGRLLDHLQNTKGFV-FKNLRQLVIDEADRILEIGFEDEMKQI--M 284
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ + T T VE + + + P GP + P +E VD
Sbjct: 285 KILGNGERQTSLFSATQTTKVEDLAR-ISLKP------GPLYINVVPRMENATVDRLEQG 337
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
P+ FL L ++++ K IVF + + +L D + VL
Sbjct: 338 YVVCEPDKRFL----LLFSFLKRNLKKKIIVFLSSCNSVNYYSELLNYID-----LPVLS 388
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q+ R + EF S R L+CTD A+RG+D +D+VV +D P DP +Y+
Sbjct: 389 IHGKQKQQKRTSTFFEFVNSE----RGILICTDVAARGLDIPEIDYVVQYDPPDDPRDYI 444
Query: 624 RRVGRTARGAGGTGKAFIFV 643
RVGRTARGA G++ +F+
Sbjct: 445 HRVGRTARGAKAKGRSLMFL 464
>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 491
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 193/380 (50%), Gaps = 27/380 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++ ++ Q + P+ IQA A P V+ G+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ S S + P RV++LAPT ELA QV + R SK VP RS V GG K
Sbjct: 63 IL--PFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKY-VPLRSACVYGGVDIKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ GV+VL+ATPGR + LI++ L +++ +LDE D + D F + +I+
Sbjct: 120 QIAEIRLGVEVLVATPGRLLDLIEQRCLNFGSVQALVLDEADRML-DMGFIPDVTRIINL 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI KL + +++ P + +E + + + +
Sbjct: 179 LPQQRQSLLFSATFSEEI-KKLAD-----RMLKSPVL------IEVARRNTVSETITHRV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
A K++ L++L+ S ++ +VF + K+ L+R + H
Sbjct: 227 HPVAAEAKRALLVKLLRSSDFNQVLVFTRTKIETNKLARELQR-----AGIAADSIHGDK 281
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q+ RL ++ F + L LV TD A+RG+D + HV+ F+ PR P +Y+ R+GR
Sbjct: 282 SQQERLKALEAFKDG----SVLVLVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGR 337
Query: 629 TARGAGGTGKAFIFVVGKQV 648
T R AG G A V +V
Sbjct: 338 TGR-AGKPGTAVSLVSASEV 356
>gi|340718889|ref|XP_003397895.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Bombus
terrestris]
Length = 662
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 204/394 (51%), Gaps = 44/394 (11%)
Query: 272 ELGCSDY--MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
E DY ++E +++Q F +PS IQ A+P ++ G+ I Q+G+GKTLA+LLP +
Sbjct: 252 EQAFQDYSEILEEIRKQKFPQPSPIQCQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIH 311
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ E Q +S P V++LAPT ELA Q+ S G+ +++ V GG +K Q
Sbjct: 312 I---EGQITPRSERKGPTVLVLAPTRELALQIEKEVNKYSYHGI--KAVCVYGGGCRKKQ 366
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL-QSLISS 448
++ + EGV+++IATPGR L++ +L + + +LDE D + D FE + ++LI
Sbjct: 367 VDVVTEGVEIVIATPGRLNDLVRTEVLDVSTVSYLVLDEADRML-DMGFEPQIRKALIDV 425
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGP----GMHRISPGLEEFLVDCSGD 502
P Q + +AT P+ + +L + + +V +G +H + + +++D
Sbjct: 426 RP-DRQTVMTSATWPITV-RRLAKSYMKNPIQVYVGSLDLVAVHTVLQKI--YIID---- 477
Query: 503 QESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
E+DKT + Q + +P K IVF K KV+++ D V
Sbjct: 478 -ENDKT---------DMMHQFFRDMAPNDKVIVFFAKKA---KVDDVAS--DLALMAVNC 522
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H +Q R ++E T EAR+ L TD ASRGID + HV+ FDFPRD E
Sbjct: 523 SSIHGGREQADREQALEELKTG---EARILL-ATDVASRGIDIDDITHVLNFDFPRDIEE 578
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
YV RVGRT R AG TG++ ++ S A+ ++
Sbjct: 579 YVHRVGRTGR-AGRTGESITYMTRSDWSHARELI 611
>gi|440748527|ref|ZP_20927779.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
gi|436483035|gb|ELP39111.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
Length = 410
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 189/378 (50%), Gaps = 30/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG D ++++L ++ + P+ IQ A P V++G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 AFKNLGIIDPILQALAQEGYTTPTPIQQQAIPIVLQGRDLLGCAQTGTGKTAAFAIPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ K + +IL PT ELA Q+ + + + V+ GG Q
Sbjct: 62 HLAEK------KQHRPGIKALILTPTRELAIQIDESFAAYGRFA-KISHTVIFGGVSQLH 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + LI + + L L +LDE D + D F ++ +I+
Sbjct: 115 QVNALKRGVDVLVATPGRLLDLIGQKYIDLSKLEIFVLDEADRML-DMGFIHDVKKVIAL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI KL + ++ P + ++P + D+ +
Sbjct: 174 LPSKRQTLFFSATMPPEI-QKLAD-----SLLTHPALVEVTPP------SSTVDKIEQRL 221
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
T +K + LL L+++ + +VF KV +L+R +V+ H
Sbjct: 222 YYTNKGDKPALLLYLLQEKKIGSALVFTRTKHGADKVVKLLQR-----EKVKCAAIHGNK 276
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + +F + + + LV TD A+RGID + +V +D P P YV R+GR
Sbjct: 277 SQNNRQNALNDFKSGKLQ----VLVATDIAARGIDIDELANVFNYDLPNIPETYVHRIGR 332
Query: 629 TARGAGGTGKAFIFVVGK 646
T R AG +G A FV G+
Sbjct: 333 TGR-AGNSGLAMSFVDGE 349
>gi|383758280|ref|YP_005437265.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381378949|dbj|BAL95766.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 466
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 113/375 (30%), Positives = 187/375 (49%), Gaps = 25/375 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +++ Q + P+ IQA A P V++G + Q+G+GKT + LP++Q
Sbjct: 2 NFTDLGLAEPLLRAVRDQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + S+ + R ++L PT ELA+QV + R+ K +P SMV+ GG +
Sbjct: 62 RLSASKPVRDSRGRI-AVRALVLTPTRELAAQVEESVRAYGKY-LPLTSMVMFGGVGMQP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + +G L L N++ +LDE D + D F ++ +++
Sbjct: 120 QIDRLKKGVDILVATPGRLLDHHGQGTLDLSNVQILVLDEADRML-DMGFIHDIKKVLAV 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D +++ P + +E + + D + K
Sbjct: 179 LPQKKQSLLFSATFSDEI-----KALAD-RLLNQPAL------IEVARRNATADTIAQKV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
KK L LI + + +VF ++ L E + + H
Sbjct: 227 YPVGREKKKELLAHLIRQGDWHQVLVFTRMKHGANRLAEYL-----NEQGITAMAIHGNK 281
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF + LV TD A+RGID + HVV ++ P P +YV R+GR
Sbjct: 282 SQGARTKALAEFKAGTLQ----VLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGR 337
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G+A V
Sbjct: 338 TGR-AGASGEAVSLV 351
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 123/396 (31%), Positives = 191/396 (48%), Gaps = 36/396 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + K R +IL PT ELA+QV + S +P S VV GG + Q
Sbjct: 63 LSKGQ-----KLKFNQVRALILTPTRELAAQVHESVEKYS-VNLPLTSDVVFGGVKANPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILNKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT EI +L + + V + + E V DKT
Sbjct: 176 PKNRQNLLFSATFSDEI-RQLAKGLVNNPVEISVATRNTTAETVEQSVYV-----VDKT- 228
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K L +LI+ + + +VF ++ L +E + H
Sbjct: 229 -----KKARVLTKLIKDNDWKQVLVFSKTKHGANRLAKTL-----EEKGISSAAIHGNKS 278
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + F +S + R+ LV TD A+RG+D + V+ D P+ P +YV R+GRT
Sbjct: 279 QGARTKALANF---KSGQVRV-LVATDIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRT 334
Query: 630 ARGAGGTGKAFIFVVGKQVS-------LAQRIMERN 658
R AG TGKA FV + S L Q+I+ R+
Sbjct: 335 GR-AGATGKAISFVSEDEASELFAIERLIQKILPRH 369
>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase [Rhizobium etli CFN 42]
gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
Length = 560
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 188/392 (47%), Gaps = 31/392 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++ +F+ LG S ++ +L + P+ IQ A P ++EG+ I Q+G+GKT A+ L
Sbjct: 20 YTLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGL 79
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+I++L +E + +++T R +ILAPT EL +Q+ N + + P R VV GG
Sbjct: 80 PLIEKLLADERRPDNRTT----RTLILAPTRELVNQIAENLKKFIRKS-PLRINVVVGGV 134
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L++G D+L+ATPGR + L+ + L +R +LDE D + D F L+
Sbjct: 135 SINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQML-DLGFVHDLRK 193
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGD 502
+ P Q + +AT+P I + E D KV V PG + + +E+++ G
Sbjct: 194 IAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVGG- 250
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K +T L K + ++P + IVF T E ++K D V
Sbjct: 251 ----KNDKTELLRKS------LTENPDGRAIVFLR---TKHGAEKLMKHLD--NIGYSVA 295
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R +K F K L+ TD A+RGID V HV +D P P Y
Sbjct: 296 SIHGNKSQGQRERALKAFRDGSIKT----LIATDVAARGIDIPAVSHVYNYDLPEVPDAY 351
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRTAR AG G A F + L + I
Sbjct: 352 VHRIGRTAR-AGRDGIAIAFCAPDEAKLLRDI 382
>gi|209886522|ref|YP_002290379.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|337739955|ref|YP_004631683.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|386028973|ref|YP_005949748.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM4]
gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
carboxidovorans OM5]
gi|336094041|gb|AEI01867.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM4]
gi|336097619|gb|AEI05442.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
Length = 512
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 193/381 (50%), Gaps = 32/381 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFRQ 386
RL + ++ K+ RV++L+PT EL+ Q+L S + G R + + GG
Sbjct: 63 RLLENRVRPQPKTC----RVLVLSPTRELSGQILD---SFTAYGRHLRLSATLAIGGVPM 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L GV+VL+ATPGR + L++ L+L + +LDE D + D F ++ ++
Sbjct: 116 GRQVRALMGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRML-DMGFIHDIRKIV 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q LF +AT+P +I + L E ++ P ++P V + ++ +
Sbjct: 175 AKLPHRRQTLFFSATMPKDIAD-LAE-----HMLREPARVAVTP------VSSTVERIAQ 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ + K + L +L++ PV++ +VF KV L + +P A
Sbjct: 223 RIIQLDSSAKPATLSELLKSEPVNRALVFTRTKHGADKVVRSLVKAG--------IPAEA 274
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
+++ + R+ + R LV TD A+RGID G+ HVV FD P P YV R+
Sbjct: 275 IHGNKSQNHRERVLAAFRNGDIRT-LVATDIAARGIDVDGITHVVNFDLPNVPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQ 647
GRTAR AG G A V G++
Sbjct: 334 GRTAR-AGAEGTAISLVAGEE 353
>gi|197335615|ref|YP_002156614.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 398
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 191/377 (50%), Gaps = 34/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++++ + P+ IQ A P + GK+ I A Q+G+GKT +++LP+++
Sbjct: 3 FSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILEI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +K + R +IL PT ELA QV N + SK + S+ + GG K Q
Sbjct: 63 LSEDS----TKVRAKRIRALILTPTRELAIQVEENIQQYSKH-IDITSLAMYGGVDYKDQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + + + + L +LDE D + D F + +I
Sbjct: 118 KQRLIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRML-DMGFIEDINKIIERL 176
Query: 450 PVTAQYLFVTATLPVEI-YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P+ Q + +ATL ++ Y + ++ + P SP ++++L D
Sbjct: 177 PLDRQNMLFSATLSDQVRYLAKTAINNPIEISISPKTTS-SPQIDQWLTTVDKD------ 229
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KKSALL LI+++ + ++F K+ + L++ D +R FH+
Sbjct: 230 -------KKSALLSHLIKENNWDQALIFIETKHGAAKLVSQLEKRD-----IRAEAFHSG 277
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
QE R + +F KE +L +LV T A+RGID + VV +D P +YV R+
Sbjct: 278 RSQEARAKVLNDF-----KEGKLQYLVATGIAARGIDIDELTRVVNYDLPFPADDYVHRI 332
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG G+A FV
Sbjct: 333 GRTGR-AGAKGEAISFV 348
>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
Length = 527
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 191/393 (48%), Gaps = 34/393 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV-I 327
S ++G DY+I+SLK N + P+ IQ +P + GK I ++GSGKTLA++LP +
Sbjct: 114 SINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFV 173
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q L+ P V++LAPT ELA Q+ C S R+ GG +
Sbjct: 174 HILAQPNLK-----YGDGPIVLVLAPTRELAEQIRQECIKFS-TESKIRNTCAYGGVPKS 227
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GV +LIA PGR + L+++ + L+ + +LDE D + D FE+ ++ ++
Sbjct: 228 GQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKML-DMGFELQIRKIVD 286
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC-SGDQESD 506
Q L +AT P E+ ++ + + + G L C S QE
Sbjct: 287 QIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVG--------SLTLTACRSIKQEIY 338
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP--- 563
E + +LLQ I K + IVF V +K + F K R+ +P
Sbjct: 339 LLEEHEKIGNLKSLLQRIFKDN-DRIIVF----VETKKNAD----FITKALRLDGMPALC 389
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H QE R + EF T +S ++ TD ASRG+D V +V+ FDFP +YV
Sbjct: 390 IHGDKKQEERRWVLNEFKTGKSP----IMIATDVASRGLDIKNVKYVINFDFPNQIEDYV 445
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R AG G +F F+ + LA+ +++
Sbjct: 446 HRIGRTGR-AGSHGASFTFLTADKYRLAKDLVK 477
>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
Length = 516
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 182/377 (48%), Gaps = 26/377 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E D E++++ N+ +P+ IQ A P ++ + + Q+GSGKT A+LLPV+
Sbjct: 78 SFLEADVEDCFKENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLS 137
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + ++G S S P+ +I+ PT EL SQ+ + R S + R +VV GG +
Sbjct: 138 TMLRNGIEGSSYSEVQEPQAIIVGPTRELVSQIFNEARKFSYNTI-VRPVVVYGGVQTSY 196
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSL 445
QL +++G +++ TPGR + I G + L ++ ILDE D + + +D + + L
Sbjct: 197 QLREIEKGAHMIVGTPGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNEL 256
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
Q L +AT P E+ + E+ D V + + +E+ + +
Sbjct: 257 GMPPKQERQTLMFSATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQ---- 312
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+K+ L+ L+ P + +VF V ++ + L F ++ + H
Sbjct: 313 --------FDKRQKLIDLLNACPNERVLVF----VEQKRNADFLASF-LSQSELPTTSIH 359
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+Q R + +F + R + LV T A+RG+D GV HVV +D P++ EYV R
Sbjct: 360 GDREQREREIALNDFKSGR----KPILVATSVAARGLDIPGVMHVVNYDMPKEIDEYVHR 415
Query: 626 VGRTARGAGGTGKAFIF 642
+GRT R G GKA F
Sbjct: 416 IGRTGR-CGNMGKATTF 431
>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 675
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 191/389 (49%), Gaps = 36/389 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F LG +++++KR F PSQIQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 70 EGFNGLGLPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPIL 129
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +++ P+ +ILAPT ELA QV + +S + + + GG
Sbjct: 130 ARI---------DTSARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYG 180
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L+ G +++ TPGR + +++G L + NLR +LDE D + N F+ ++ ++
Sbjct: 181 IQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLN-MGFQEDVERILE 239
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGL-EEFLVDCSGDQESD 506
+P Q +AT+P I + D + V R + + + +L
Sbjct: 240 DTPEDKQVALFSATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLF--------- 290
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
TA NK A+ +++E + IVF T ++ E I + ++R F A
Sbjct: 291 ----TAHRNKLDAITRVLEVTEFDAMIVFVR---TKQETEEIAE-------KLRARGFSA 336
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
A +E T ++ RL LV TD A+RG+D + HV+ +D P D YV R
Sbjct: 337 AAINGDIAQQQRERTVDMLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHR 396
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG TG+A +FV ++ + + I
Sbjct: 397 IGRTGR-AGRTGEALLFVTPRERRMLRSI 424
>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 435
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 186/382 (48%), Gaps = 36/382 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F+ FK+L ++++L + P+ IQ A P + + K + Q+G+GKT A+ +
Sbjct: 15 FNNLQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAI 74
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L + K+ R ++L PT ELA Q+ N + SK +P R++V+ GG
Sbjct: 75 PILQMLTYSK----EKTAQKRIRTLVLTPTRELAIQIKENFDAYSK-ELPIRNLVIYGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ Q + L++G+D+LIATPGR + L +G + L L +LDE D + D F ++
Sbjct: 130 GQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRML-DMGFIHDVKK 188
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+IS P Q L +AT+P EI + D P ++P
Sbjct: 189 VISIIPKKRQTLLFSATMPAEIQKLASHILED------PSKVEVTP----------ESTT 232
Query: 505 SDKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
++K ++ + +K+ L L++ + T+VF T + I K D + ++
Sbjct: 233 AEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVFSR---TKHGADRIAK--DLAKQGIQ 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + F + ++ R+ LV TD A+RGID + +V+ FD P P
Sbjct: 288 AAAIHGNKSQSARQNALNNF---KDRKLRV-LVATDIAARGIDIDDLSYVINFDLPNIPE 343
Query: 621 EYVRRVGRTARGAGGTGKAFIF 642
YV R+GRT R AG GKA F
Sbjct: 344 SYVHRIGRTGR-AGKDGKAISF 364
>gi|389690958|ref|ZP_10179851.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388589201|gb|EIM29490.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 502
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/391 (32%), Positives = 189/391 (48%), Gaps = 42/391 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD + +++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFAELGLSDKVQQAVAAAGYTEPTPIQAQAIPHVLSRRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N K GV + V + GG
Sbjct: 62 LLET------GRARARMPRTLILEPTRELAAQVEEN---FDKYGVNHKLSVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + GVDVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 GDQDAKITRGVDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
P T Q LF +AT+P EI +L + F KV + S + + D E
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-QRLADAFLHNPVKVEVARAASTASTITQRLVATGREDYE 230
Query: 505 SDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRV 561
K+ L +LI + + IVFCN+ + L++ FD
Sbjct: 231 -----------KRETLRELIRGATDLQNAIVFCNRKRDVAVLHRSLQKHGFD-------A 272
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+ H +DQ R+A + F RS E + LV +D A+RG+D V HV +D P +
Sbjct: 273 VALHGDMDQHARMAALDSF---RSGEMPI-LVASDVAARGLDIPAVSHVFNYDIPHHAED 328
Query: 622 YVRRVGRTARGAGGTGKAFIFV-VGKQVSLA 651
YV R+GRT R AG +G++F V G + SLA
Sbjct: 329 YVHRIGRTGR-AGRSGQSFTLVGPGDEKSLA 358
>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 786
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 225/459 (49%), Gaps = 50/459 (10%)
Query: 225 EKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLK 284
+K TK+ + S +QY + + + +F + FKE +
Sbjct: 325 KKEETKVKTSSSATASAETVQYREQNNVTYEDIHRGE-EFAPVRDFKEASTIFPSVIMKV 383
Query: 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK--ST 342
+ F +P+ IQA ++P G+ I ++GSGKTL++ LP++ ++ LSK ST
Sbjct: 384 TEKFTKPTPIQAQSWPIARSGRDIIAIAETGSGKTLSFGLPILAQI-------LSKQNST 436
Query: 343 SG---SPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
SG +P +++LAPT ELA Q C + + CG +++ V GG ++ ++ L+ GVD
Sbjct: 437 SGGKRTPLMLVLAPTRELAMQTADVCEAAGATCG--LKTLCVYGGSPREGNVKALKAGVD 494
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
+LIATPGR + L++EG+ L ++ +LDE D + D FE A++ +I++ P T Q L
Sbjct: 495 LLIATPGRLIDLLQEGVAVLDKVQHLVLDEADRML-DMGFEPAIRQIIAAVPKTRQTLMF 553
Query: 459 TATLPVEIYNKLVEVFPD-CKVVM--------GPGMHRISPGLEEFLVDCSGDQESDKTP 509
+AT P+ I + E + KV + GP +R + E + D+E
Sbjct: 554 SATWPLSIQSLANEFLREPAKVTIGVKQEQSDGPTANRRVTQIVEVM--TYRDKE----- 606
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
++ LL + KS ++ +VF ++E L+R K V H
Sbjct: 607 -----HRLQDLLHKLHKSRKNRILVFALYKKEAERIEQTLRRKGWK-----VQGIHGDKS 656
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R ++ F RS E L LV TD A+RG+D V++V+ + FP +YV R+GRT
Sbjct: 657 QALRSKAIESF---RSGEEPL-LVATDVAARGLDIPDVEYVINYTFPLTIEDYVHRIGRT 712
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
R AG TG A+ F + + A + + R+ + D+P
Sbjct: 713 GR-AGKTGTAYTFFTDEDKTHAGELQQVLREAN--QDIP 748
>gi|344231947|gb|EGV63826.1| DEAD-domain-containing protein [Candida tenuis ATCC 10573]
Length = 552
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/411 (30%), Positives = 200/411 (48%), Gaps = 45/411 (10%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
S+D D F ++G S+ +++++ F +++QA PP++ G+ + A ++GSGK
Sbjct: 79 SSDDDKDVNFDFDKVGLSEPTLKAIEDMGFKTMTKVQAKTIPPLLAGRDVLGAAKTGSGK 138
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
TLA+LLP I E L L VV+++PT ELA Q+ R L +
Sbjct: 139 TLAFLLPAI-----EMLYSLKFKPRNGTGVVVISPTRELALQIFGVARELLAHHTQTFGI 193
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDE 436
V+ GG ++ + E LQ+GV++LIATPGR + ++ EG + NLR I+DE D + +
Sbjct: 194 VI-GGANRRQEAEKLQKGVNLLIATPGRLLDHLQNTEGFV-FRNLRALIIDEADRIL-EI 250
Query: 437 DFEVALQSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP----- 490
FE ++ +I P Q + +AT + VE + GP + P
Sbjct: 251 GFEDEMKQIIKILPKEERQTMLFSATQTTK-----VEDLARISLRPGPLYINVVPETEIS 305
Query: 491 ---GLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVEN 547
GLE+ V C ESDK FL L ++++ K IVF + +
Sbjct: 306 TADGLEQGYVTC----ESDKR----FL----LLFSFLKRNVKKKIIVFLSSCNCVKYFGE 353
Query: 548 ILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGV 607
+L D + VL H Q+ R EF ++ L+CTD A+RG+D V
Sbjct: 354 LLNYID-----LPVLDLHGKQKQQKRTNTFFEFCNAKQG----ILICTDVAARGLDIPAV 404
Query: 608 DHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
D ++ FD P DP +Y+ RVGRTARG G GK+ +F++ ++ + + N
Sbjct: 405 DWIIQFDPPDDPRDYIHRVGRTARGTDGKGKSLMFLLPSELGFLRYLKAAN 455
>gi|281208736|gb|EFA82911.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 698
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/399 (28%), Positives = 195/399 (48%), Gaps = 51/399 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L + +++ F + + IQA P++EG+ + A ++GSGKTLA+L+P I+
Sbjct: 196 FNSLPIEEKTKKAIAEMKFTKMTPIQAKTIMPLLEGRDLLGAARTGSGKTLAFLIPAIEI 255
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + ++ +G V+I++PT ELA Q+ R L +V+ G ++ +
Sbjct: 256 LVKANFK--PRNGTG---VIIISPTRELALQIYGVARELMLNHTQTHGLVIGGNNDKRAE 310
Query: 390 LENLQEGVDVLIATPGRFM--------FLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
+E L++GV++L+ TPGR + F++K NL+C ++DE D + + FE
Sbjct: 311 IERLEKGVNLLVCTPGRLLDHLQNTRGFIVK-------NLKCLVIDEADRIL-EVGFEED 362
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR---ISPGLEEFLVD 498
+ ++ P Q + +AT ++ + F V +G R GLE+ V
Sbjct: 363 MHQIVKLLPKERQTMLFSATQTRKVDDIARVSFNKEPVYVGVDDDREVSTVEGLEQGYVV 422
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF---CNKIVTCRKVENILKRFDRK 555
C E FL L ++K+ K IVF CN + ++ N +
Sbjct: 423 CPS--------EKRFL----LLYTFLKKNLNKKVIVFLSSCNSVKYHAELLNFIG----- 465
Query: 556 ETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDF 615
+ VL FH Q+ R EF + + L+CTD A+RG+D VD ++ FD
Sbjct: 466 ---IPVLEFHGKQKQQKRTNTFYEFVNAE----KGILICTDVAARGVDIPSVDWIIQFDP 518
Query: 616 PRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
P DP EY+ RVGRTARG G G+A +F++ ++++ + +
Sbjct: 519 PDDPKEYIHRVGRTARGVGKKGRALLFLLPQELTFLKYL 557
>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
Length = 565
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/392 (31%), Positives = 189/392 (48%), Gaps = 31/392 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++ +F+ LG S ++ +L + P+ IQ A P +++G+ I Q+G+GKT A+ L
Sbjct: 20 YALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGL 79
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+I++L +E + +++T R +ILAPT EL +Q+ N + + P R VV GG
Sbjct: 80 PLIEKLLADERRPDNRTT----RTLILAPTRELVNQIADNLKKFIRKS-PLRINVVVGGV 134
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L++G DVL+ATPGR + L+ + L +R +LDE D + D F L+
Sbjct: 135 SINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQML-DLGFVHDLRK 193
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGD 502
+ P Q + +AT+P I + E D KV V PG + + +E+++ +G
Sbjct: 194 IAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPG--KAADKVEQYVHFVAG- 250
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K +T L K + ++P + IVF T E ++K D V
Sbjct: 251 ----KNDKTELLRKS------LTENPDGRAIVFLR---TKHGAEKLMKHLD--NIGYSVA 295
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R +K F K L+ TD A+RGID V HV +D P P Y
Sbjct: 296 SIHGNKSQGQRERALKAFRDGSIKT----LIATDVAARGIDIPAVSHVYNYDLPEVPDAY 351
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRTAR AG G A F + L + I
Sbjct: 352 VHRIGRTAR-AGRDGIAIAFCAPDEAKLLRDI 382
>gi|414176153|ref|ZP_11430382.1| hypothetical protein HMPREF9695_04028 [Afipia broomeae ATCC 49717]
gi|410886306|gb|EKS34118.1| hypothetical protein HMPREF9695_04028 [Afipia broomeae ATCC 49717]
Length = 482
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 194/389 (49%), Gaps = 28/389 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALKEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILESFNAYGRH-IKLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G+DV++ATPGR + +++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRSVMPGIDVMVATPGRLLDMVQGNALKLGQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P +I + ++ + P ++P V + ++ + K
Sbjct: 177 LPTKRQTLFFSATMPKDIADLADQMLNN------PARVAVTP------VSSTVERITQKV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ K + L Q+++ V++ +VF T + ++K + + H
Sbjct: 225 LQVDHSAKPAILAQILKTEQVNRALVFTR---TKHGADKVVKGLVKAGIPAEAI--HGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F T + LV TD A+RGID G+ HV+ FD P YV R+GR
Sbjct: 280 SQNHRERVLAAFRTGDIRT----LVATDIAARGIDVDGISHVINFDLTNVPETYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMER 657
TAR AG G A V G + R +ER
Sbjct: 336 TAR-AGADGTAISLVAGGEELGYLRDIER 363
>gi|407043198|gb|EKE41803.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 684
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 184/379 (48%), Gaps = 30/379 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G + + + ++ + P+ IQ A P ++ G I ++GSGKT AYL+P+I R
Sbjct: 15 FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINR 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +G+ R +I+ PT ELA Q + L K ++ ++ GG + Q
Sbjct: 75 LETHSTEGV--------RSLIICPTRELALQTIKVFNELGKL-TNLKASLIIGGSKLSDQ 125
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+NL G D+++ATPGR F+++ + L + DE D++F + F + ++
Sbjct: 126 FDNLSSGPDIIVATPGRLTFILEGANISLNRVEMVCFDEADLMF-ESGFSEQVSDIMRML 184
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q L +ATLP + L +++ R+SP L+ F +E +K
Sbjct: 185 PPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHV---KEHEKEG 241
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+L +T+VFC + ILK F+ K + + F A D
Sbjct: 242 HLLYLLLDLI-------GDKEQTVVFCATRHEVEYLNEILKIFEIKTS----IMFGKA-D 289
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q+ R N+K+F R +E + LV TD A+RG+D +D+V+ +DFP P Y+ R GR
Sbjct: 290 QQEREINLKKF---RKQETHVLLV-TDVAARGVDIPELDNVINYDFPATPKLYIHRCGRV 345
Query: 630 ARGAGGTGKAFIFVVGKQV 648
AR AG GK + FV +V
Sbjct: 346 AR-AGRMGKCYNFVQTDEV 363
>gi|339492846|ref|YP_004713139.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800218|gb|AEJ04050.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 441
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 192/400 (48%), Gaps = 28/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L +L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRML-DLGFAEELDALFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT I E+ D V + + ++++LV ++S+
Sbjct: 176 LPKKRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSE-- 233
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L L+ + + +VF T + V+ ++ + + H
Sbjct: 234 ----------LFLHLLAERRWGQVLVFVK---TRKGVDQLVDELQAQGIASDAI--HGDK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q +RL ++ F + LV TD A+RG+D + VV FD P +YV R+GR
Sbjct: 279 PQASRLRALERFKAGEVQ----VLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
T R AG +G+A V +V I + P HD P
Sbjct: 335 TGR-AGASGEAISLVAADEVDQLAAIETLINQVLPRHDEP 373
>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
Length = 725
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 120/381 (31%), Positives = 188/381 (49%), Gaps = 31/381 (8%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++ +K+Q F P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 106 FPVQAFEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYIL 165
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P I + + S P V+ILAPT ELA Q+ + R S C R+ + G
Sbjct: 166 PAIVHINNQP----RLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFG 218
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q +L+ GV++ IATPGR + +++G L +LDE D + D FE +
Sbjct: 219 GSPKGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQI 277
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSG 501
+ +I Q L +AT P E+ + D ++ +G + + + + C
Sbjct: 278 RKIIEQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEIC-- 335
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
QE +K ET K S LL+ I + SK I+F + T +KV++I K R
Sbjct: 336 -QEHEK--ET----KLSQLLREI-GAERSKMIIF---VETKKKVDDITKTIKRDG--WPA 382
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+ H Q R + EF ++ + LV TD A+RG+D V +V+ FD+P +
Sbjct: 383 ISIHGDKSQPERDYVLSEFRNGKT----MILVATDVAARGLDVEDVKYVINFDYPNSSED 438
Query: 622 YVRRVGRTAR-GAGGTGKAFI 641
Y+ R+GRT R + GT A+
Sbjct: 439 YIHRIGRTGRCQSAGTAYAYF 459
>gi|110834556|ref|YP_693415.1| DEAD/DEAH box helicase [Alcanivorax borkumensis SK2]
gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
borkumensis SK2]
Length = 551
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 200/410 (48%), Gaps = 35/410 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR F LG + ++ ++ RQ F +PS IQA A P +++G + Q+G+GKT A+ LP
Sbjct: 4 SRSGFASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL + P+++ILAPT ELA QV + C +K + + + GG
Sbjct: 64 LLARL---------DPSLREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGE 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+TQL+ L+ G V++ TPGR M + G ++L NL+ +LDE D + F ++ +
Sbjct: 115 YRTQLKGLRGGAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLR-MGFIDDVKWV 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P + K+ + + + P + RI G +G
Sbjct: 174 LERTPDDCQLALFSATMP-PVIRKVAD-----QHLKQPKLVRIDNGGA-----TTGTTIR 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
+ A LNK A+ +++E +VF K T E + +R R E
Sbjct: 223 QRYWPVAGLNKLDAVCRILEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEA------L 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
+ + Q+ R E T R K+ R L+ TD +RG+D + HVV +D P DP YV
Sbjct: 277 NGDIPQQQR-----EKTVQRLKDKRFDLLIATDVVARGLDVPRITHVVNYDMPGDPEAYV 331
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R AG G A +FV ++ + ++I R+ +PS +L
Sbjct: 332 HRIGRTGR-AGRQGDAILFVARREQHVLRQIERITRQSIEKMALPSVDDL 380
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 185/379 (48%), Gaps = 29/379 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + ++++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMIT- 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR ++L PT ELA+QV N + +K + ++ GG K Q
Sbjct: 63 -----LLARGRARARMPRSLVLCPTRELAAQVAENFDTYTKH-LKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI-SPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F + S +E+ +V G + +
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREA 234
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E K++ L LI E + I+FCN+ V L+++ P H
Sbjct: 235 SE-----KRAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYG-----YDAAPIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
LDQ R + F +E +L LV +D A+RG+D V HV FD P P +YV R
Sbjct: 285 DLDQSQRTRTLDGF-----REGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHR 339
Query: 626 VGRTARGAGGTGKAFIFVV 644
+GRT R AG GKA +
Sbjct: 340 IGRTGR-AGRDGKAITLCI 357
>gi|389876606|ref|YP_006370171.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388527390|gb|AFK52587.1| DEAD/DEAH box helicase domain-containing protein [Tistrella mobilis
KA081020-065]
Length = 528
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/399 (29%), Positives = 194/399 (48%), Gaps = 33/399 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S+ ++ +L + ++ P+ IQ A P +V G+ + Q+G+GKT A+ LP++
Sbjct: 3 NFSELGLSETLLRALDQAGYVTPTPIQEQAIPHLVAGRDLLGIAQTGTGKTAAFALPILN 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + + + G R +ILAPT ELA+Q+ N ++ ++ + VV GG
Sbjct: 63 RIAADRNRA---NMPGRTRCLILAPTRELAAQIADNIKTYARH-MRVHVAVVVGGVSAGP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + G+D+L+ATPGR + + G+L+L +LDE D + D F + ++ +++
Sbjct: 119 QIRAIARGLDILVATPGRLVDHLDSGVLKLDRTEVVVLDEADHML-DLGFIIPIRRILAK 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI E+ D V ++P V + ++ +
Sbjct: 178 LPTRRQSLFFSATMPKEIGALAGEMLRDPIEVS------VTP------VATTAERVEQRV 225
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP---FH 565
K+ L++L+E V + +VF +V + L+ V LP H
Sbjct: 226 VRIEPARKRGVLIELLESEGVHRALVFTRTKRGADRVAHDLE--------VAGLPAAAIH 277
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F R + LV TD A+RGID +GV HV ++ P P YV R
Sbjct: 278 GNKSQSQRERALGGFRDGRVR----ILVATDIAARGIDVSGVSHVFNYELPDVPESYVHR 333
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
+GRTAR AG G A ++ L + I R+ P+
Sbjct: 334 IGRTAR-AGAEGIAITLCADDELGLLRDIERLTRQTLPI 371
>gi|357126556|ref|XP_003564953.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like
[Brachypodium distachyon]
Length = 496
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 204/420 (48%), Gaps = 32/420 (7%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRK--SFKELGCSDYMIESLKRQNFLRPSQIQAM 297
S+ + + + ++R + + DG + F+++G +Y+++ + + F+ P+ IQ+
Sbjct: 63 SVAGMTADEVEAYRRRREITVDGHDVPKPVCDFRDVGFPEYVLQEITKAGFVEPTPIQSQ 122
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
+P ++G+ I ++GSGKTLAYLLP I + + + + P V++LAPT EL
Sbjct: 123 GWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL----APGDGPIVLVLAPTREL 178
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
A Q+ +S + GG + Q+ +LQ+GV+++IATPGR + +I+
Sbjct: 179 AVQIQQETTKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTN 237
Query: 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE--VFP 475
L + +LDE D + D FE ++ ++S Q L+ +AT P E+ +L +F
Sbjct: 238 LRRVTYLVLDEADRML-DMGFEPQIKKIVSQIRPDRQTLYWSATWPKEV-EQLARNFLFD 295
Query: 476 DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF 535
KV++G EE + + Q + E+ NK LL+ I S+ ++F
Sbjct: 296 PYKVIIGS---------EELKANHAICQYVEILSESQKYNKLVNLLEDIMDG--SRILIF 344
Query: 536 CNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCT 595
+ C ++ L R D L H Q R + EF + +S + T
Sbjct: 345 MDTKKGCDQITRQL-RMDGWPA----LSIHGDKSQAERDWVLSEFKSGKSP----IMTAT 395
Query: 596 DRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
D A+RG+D V +V+ +DFP +YV R+GRT R AG TG A+ F A+ ++
Sbjct: 396 DVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR-AGATGTAYTFFTAANARFAKDLI 454
>gi|395215483|ref|ZP_10400949.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394455827|gb|EJF10233.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 476
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 186/375 (49%), Gaps = 31/375 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++++L+ + + +P+ IQ A P ++ G + Q+G+GKT A+ +PV+Q
Sbjct: 2 TFSELNLIDPILKALQAEGYTQPTPIQEQAIPHLLAGTDVLGCAQTGTGKTAAFAIPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQK 387
L ++ S + + +IL PT ELA Q+ + + K GV R V+ GG Q
Sbjct: 62 MLHNQK-----NRASNTIKTLILTPTRELAIQINESFAAYGKNTGV--RHTVIFGGVSQH 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GVDVLIATPGR + LI +G + L ++ +LDE D + D F ++ +I
Sbjct: 115 AQVQTLKRGVDVLIATPGRLLDLIGQGFISLKHVEFFVLDEADRML-DMGFIHDVKRIIP 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +++ D +++ P ++P V + ++
Sbjct: 174 MLPKQRQSLFFSATMP-----PVIQDLADT-ILINPVKVEVTP------VSSTAEKVGQA 221
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+K+ L L+ +S + + +VF T + + K D + ++ H
Sbjct: 222 VYFVEKNDKRELLRHLLSESEIDRVLVFTR---TKHGADRVAK--DLNKANIQAEAIHGN 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F ++ LV TD A+RGID + HV+ ++ P +P YV R+G
Sbjct: 277 KSQNARQRALSNFKAGSTR----VLVATDIAARGIDVEELSHVINYELPNEPETYVHRIG 332
Query: 628 RTARGAGGTGKAFIF 642
RT R AG G A F
Sbjct: 333 RTGR-AGNAGIALSF 346
>gi|386821621|ref|ZP_10108837.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
gi|386426727|gb|EIJ40557.1| DNA/RNA helicase, superfamily II [Joostella marina DSM 19592]
Length = 461
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/413 (30%), Positives = 191/413 (46%), Gaps = 43/413 (10%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF E S+ + +++ F P+ IQ AFP V+ GK I Q+G+GKT AY+LP+
Sbjct: 10 QSFDEFKISNQLQYAIEDLGFENPTPIQEKAFPVVMSGKDVIGIAQTGTGKTFAYMLPI- 68
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LQGL S +PRV+++ PT EL QV+ SK + R V GG
Sbjct: 69 -------LQGLKFSKQVNPRVLVMVPTRELVVQVVEEIAKFSKY-MNIRVEGVYGGTNIN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E L +G D+++ATPGR L+ +QL ++ ++DEVD++ D F L ++
Sbjct: 121 RQKEALAQGTDIIVATPGRLYDLVISRAVQLKAVKKLVIDEVDVML-DLGFRFQLNNIFE 179
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG------ 501
P Q + +AT+ EI + + F G E+ V SG
Sbjct: 180 LLPERRQNIMFSATMTDEIETLIQDFF---------------RGTEKVSVAVSGTPLENI 224
Query: 502 DQESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
DQ P F K + L ++ +K K +VF V+ +K ++L + +
Sbjct: 225 DQSCYSVPN--FYTKINLLHHILKDKEVFKKVLVF----VSNKKSADLLYTVLTENFKDD 278
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
V H+ Q RL +++EF + LV TD +RG+D + HV FD P P
Sbjct: 279 VCVIHSNKTQNYRLRSIEEFEEGVHR----ILVTTDVMARGLDLDKISHVFNFDTPAFPE 334
Query: 621 EYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
Y+ R+GRT R A G A +F K+ + I E + P HD P E+
Sbjct: 335 NYMHRIGRTGR-AEEKGSAILFFTEKEKENKEAIEELMKMEIPQHDFPEEVEV 386
>gi|365960392|ref|YP_004941959.1| DEAD-box ATP dependent DNA helicase [Flavobacterium columnare ATCC
49512]
gi|365737073|gb|AEW86166.1| DEAD-box ATP dependent DNA helicase [Flavobacterium columnare ATCC
49512]
Length = 421
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 31/366 (8%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++ES+K N+ +P++IQ P V+EG+ + Q+G+GKT A+ +P++ L + G
Sbjct: 12 IVESIKEANYTKPTEIQEKTIPIVLEGEDLVGCAQTGTGKTAAFAIPILNYLI--PIVG- 68
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S R V+LAPT ELA Q+ + K ++ + GG Q TQ+E L+EG+D
Sbjct: 69 SVKKKKYIRTVVLAPTRELALQIEESFNKYGKY-TNCTTLTIYGGVPQATQVEKLKEGID 127
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
+LIATPGRF+ L K+G++ + +L ++DE D++ D F ++ + +P Q L
Sbjct: 128 ILIATPGRFLDLNKQGVIDINHLHHLVIDEADLML-DMGFINDVRKITKIAPQNRQTLLF 186
Query: 459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE--FLVDCSGDQESDKTPETAFLNK 516
+AT+P+EI E K V S + + + V+ S K
Sbjct: 187 SATMPIEIREIAEEFLKKPKYVEVKSTFNNSQNIIQSVYFVEKS--------------EK 232
Query: 517 KSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
K LL++I++ + TI+F + T + EN L F RK ++ H Q R
Sbjct: 233 KQLLLRVIKQEKLGNTIIF---VRTKQGAEN-LAEFLRK-NQLNCDALHGDKSQNARQKV 287
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
+++F FL+ TD ASRGID + V+ +D P P Y+ R+GRT R AG +
Sbjct: 288 LEDFKNKTID----FLIATDVASRGIDIDQLPVVINYDLPNIPETYIHRIGRTGR-AGHS 342
Query: 637 GKAFIF 642
G A F
Sbjct: 343 GIAISF 348
>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 499
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 186/378 (49%), Gaps = 27/378 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMISM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG-GFRQKT 388
L++ ++ + PR ++LAPT ELA+QV N +K +++++ G F+++
Sbjct: 64 LKR------GRARARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQD 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ +
Sbjct: 118 QL--IDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFGL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P T Q LF +AT+ EI + V S + + +V G ++ ++
Sbjct: 175 TPFTRQTLFFSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRES 234
Query: 509 PETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E K+ L +IE I+FCN+ V V +K++ + P H
Sbjct: 235 SE-----KRQLLRTMIENEGDKCRNGIIFCNRKVDVDIVAKSMKKYG-----LDASPIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R+ + F + FLV +D A+RG+D V HV +D P +YV R+
Sbjct: 285 DLDQSKRMETLAAFRDGTLR----FLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVV 644
GRT R AG G A + V
Sbjct: 341 GRTGR-AGKLGTAMMICV 357
>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 713
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 190/387 (49%), Gaps = 34/387 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++K+ F PS IQA P ++EG + Q+G+GKT A+ LP++
Sbjct: 75 SFDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILS 134
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ +SK P+ ++LAPT ELA QV + +S S+ + + GG
Sbjct: 135 RI------DVSKR---HPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGV 185
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR + +++G L + LR +LDE D + N F+ ++ ++
Sbjct: 186 QLSGLRRGAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLN-MGFQEDVERILED 244
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q +AT+P I + D + + R S +E+ + S
Sbjct: 245 TPSDKQVALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVS-------- 296
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K AL +++E + I+F + T + E + + R+R F+AA
Sbjct: 297 ----HRDKLDALTRILEITEFEAMIMF---VRTKNETEELAE-------RLRARGFNAAA 342
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
N++E T + K+ RL LV TD A+RG+D + HV +D P D YV R+G
Sbjct: 343 INGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIG 402
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG G+A +FV ++ L + I
Sbjct: 403 RTGR-AGRKGRAILFVTPRERRLLKSI 428
>gi|410594336|ref|YP_006951063.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
gi|410517975|gb|AFV72119.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
Length = 516
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/375 (30%), Positives = 186/375 (49%), Gaps = 35/375 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S ++ ++++ F+ PS IQ M P +EGK I Q+G+GKT A+ LP + +
Sbjct: 3 FTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
+ E+ + + +I+APT ELA Q + GV RS V GG +
Sbjct: 63 IHTED---------NTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRS--VYGGSSIEK 111
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ G V++ TPGR + LIK L+L ++ ILDE D + N F ++++IS
Sbjct: 112 QIKALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLN-MGFLEDIEAIISR 170
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I V+ D + V + ++++ V +++ D
Sbjct: 171 VPEARQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFD-- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ +L++ +IVF T R+V+ + + + R + H L
Sbjct: 229 ----------TMTRLMDVDQPELSIVFGR---TKRRVDELTRGLKLRGFRAEGI--HGDL 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ RL +++F LV TD A+RG+D +GV HV +D P+DP YV R+GR
Sbjct: 274 DQNKRLRVIRDFKNDHID----ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGR 329
Query: 629 TARGAGGTGKAFIFV 643
T R AG +G++ FV
Sbjct: 330 TGR-AGKSGQSITFV 343
>gi|421099117|ref|ZP_15559777.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200901122]
gi|410797851|gb|EKR99950.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200901122]
Length = 513
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L++ ++IATPGR M ++ G ++L +++ ILDE D + D F ++ ++ +
Sbjct: 117 LRALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVILDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 176 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 232 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID + V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVSNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|403350942|gb|EJY74950.1| RNA helicase, putative [Oxytricha trifallax]
Length = 644
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 197/388 (50%), Gaps = 33/388 (8%)
Query: 269 SFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+F+E Y++E+L++Q NF++PS IQ+ +P + G+ + ++GSGKTL++LLP I
Sbjct: 65 TFEEAKFPKYIMETLQQQENFVKPSAIQSQGWPVALSGRDMVGIAETGSGKTLSFLLPGI 124
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQ 386
+ +E+ + P V+++APT EL Q+ CR ++ C + + + GG +
Sbjct: 125 VHVNAQEML----ESGDGPIVLVMAPTRELVMQIEQQCRKFAQPCKIS--CLAIFGGVPR 178
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L GV++LIATPGR + ++ G+++L + +LDE D + D FE ++ ++
Sbjct: 179 DGQQQKLSRGVEILIATPGRLLDFMESGVVKLNRVTYLVLDEADRML-DMGFEKHIKKIL 237
Query: 447 SSSPVTAQYLFVTATLPVEIYN---KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ Q L +AT P E+ V P + PG+ + +++ + C +
Sbjct: 238 GNVRPDRQTLMWSATWPKEVEELARSYCNVLPVHIQIGNPGL-TANLRIKQVIDVC---E 293
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E DK F+N + + SK IVFC T R V+++ ++ R + V
Sbjct: 294 EEDKY--YRFMNFMKKM------NDGSKVIVFCE---TKRGVDDLSRKM-RTDGWHAVKG 341
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + K+F L+ TD ASRG+D + +VV +D P+ +YV
Sbjct: 342 IHGDKSQAERDSTYKDFKDGTC----YILIATDVASRGLDVKDIKYVVNYDMPKQCEDYV 397
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLA 651
R+GRTAR AG +G A+ + +A
Sbjct: 398 HRIGRTAR-AGASGSAYALFTKNNMMIA 424
>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 415
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/372 (30%), Positives = 192/372 (51%), Gaps = 27/372 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L S + +++ + +L P+ IQ + P V+ G+ I Q+G+GKT A+ +P+I +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G SK + R +I+ PT ELA Q+ + + SK + + GG Q Q
Sbjct: 63 LHR--IVGSSKK-AKQIRALIVTPTRELAVQIGQSFDTYSKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L K+G L L +L +LDE D + D F ++ ++ +
Sbjct: 119 VDALKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQML-DMGFINDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLLFSATMPLAI-RELAEMF-----LQDPEKVEVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
K++ L +LI++ +S +VF T +N++K +K +P A
Sbjct: 226 FVDKTEKRNLLYRLIKEENLSNVLVFSR---TKHGADNVVKALRKKN-----IPAEAIHG 277
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
+++ A + ++KE + LV TD A+RGID + +V+ FD P P YV R+GRT
Sbjct: 278 DKSQNARQRVLDAFKNKEVGV-LVATDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRT 336
Query: 630 AR-GAGGTGKAF 640
R G GG +F
Sbjct: 337 GRAGNGGIAISF 348
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 195/409 (47%), Gaps = 30/409 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ++ SD + +++ F PS IQA A P ++EGK I Q+G+GKT A+ +P+I+R
Sbjct: 24 FTDMNLSDEVKRAVEVMGFESPSPIQAEAIPHLLEGKDVIGQAQTGTGKTAAFGIPLIER 83
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + S P+ +IL PT ELA QV L+K V GG + Q
Sbjct: 84 IIKANENSEFDRNSRLPKGIILCPTRELAVQVAGELEKLAKFRKDIFVTAVYGGESIEKQ 143
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSLI 446
+ NL+ GV +++ TPGR + IK G L+L + ILDE D + N ED E+ LQ +
Sbjct: 144 IRNLRRGVQIVVGTPGRTIDHIKRGTLKLEEITNIILDEADEMLNMGFKEDIELILQQIT 203
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ Q + +AT+P I + ++V S +E+ + + + ++D
Sbjct: 204 TEH----QTVLFSATMPKPILQIAKKYQNSPEIVKVISKELTSDNIEQSFLPINPNYKTD 259
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
L++L+ + ++FCN T ++ + + + +K L H
Sbjct: 260 ------------VLVRLLAYNGWESMLIFCN---TKQRTDEVAETLIQKGYAAEAL--HG 302
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R M +F R + LV TD A+RGID V+ V+ +D P DP YV R+
Sbjct: 303 DLAQHQRNLVMNKFRHGRVQ----ILVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRI 358
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH-PLHDVPSAFELM 674
GRT R AG G + F+ G++ +ER K P +P+ E++
Sbjct: 359 GRTGR-AGNKGVSITFISGRREVYRLNDIERYSKSRIPQGTIPTQQEVL 406
>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|417824458|ref|ZP_12471049.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|419829955|ref|ZP_14353441.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832928|ref|ZP_14356390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|421354161|ref|ZP_15804493.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|422307246|ref|ZP_16394411.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|422917142|ref|ZP_16951470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423819816|ref|ZP_17716074.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423853148|ref|ZP_17719866.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423880572|ref|ZP_17723468.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423997559|ref|ZP_17740818.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424016266|ref|ZP_17756107.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424019207|ref|ZP_17759003.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424624749|ref|ZP_18063221.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424629251|ref|ZP_18067548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424633282|ref|ZP_18071392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424636373|ref|ZP_18074388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424640310|ref|ZP_18078200.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424648344|ref|ZP_18086014.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443527168|ref|ZP_21093233.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|340048143|gb|EGR09066.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|341638535|gb|EGS63182.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|395953286|gb|EJH63899.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|408014062|gb|EKG51743.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408019673|gb|EKG57065.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408024809|gb|EKG61897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408025337|gb|EKG62396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408034628|gb|EKG71119.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408057083|gb|EKG91949.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408621540|gb|EKK94543.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408622563|gb|EKK95545.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408635749|gb|EKL07935.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408642909|gb|EKL14653.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408643117|gb|EKL14856.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651572|gb|EKL22828.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408853491|gb|EKL93284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408861066|gb|EKM00665.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|408868702|gb|EKM08022.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|443454574|gb|ELT18376.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 397
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|398332265|ref|ZP_10516970.1| ATP-dependent RNA helicase [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 516
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ ILDE D + D F ++ ++ +
Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLDDIKIVILDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+
Sbjct: 176 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QEN--- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 229 ------TKGEALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|374331354|ref|YP_005081538.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359344142|gb|AEV37516.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 476
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 189/391 (48%), Gaps = 33/391 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ +++ + P+ IQA A P V+E + + Q+G+GKT ++ LP+I
Sbjct: 2 SFSTLGLSEKVLAAVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMIT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N ++ GV + V + GG
Sbjct: 62 LLEK------GRARARMPRTLILEPTRELAAQVEDN---FNRYGVNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 AEQDRKLERGADVLIATPGRLLDHFERGKLLLQGVDILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q LF +AT+P EI +L + F + P ++ + + +
Sbjct: 172 KLIPFTRQTLFFSATMPSEI-QRLTDTF-----LQNPA--KVEVAKASTTAETVTQRIAA 223
Query: 507 KTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
PE K++ L +LIE + + IVFCN+ R V + + R E V L H
Sbjct: 224 AEPED--YEKRAKLRELIEGAEDLQNAIVFCNR---KRDVATLFRSLVRHEFSVGAL--H 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ +R+ + F K LV +D A+RG+D V HV FD P +YV R
Sbjct: 277 GDMDQRSRMTMLDNFKKGNIK----ILVASDVAARGLDIPSVSHVFNFDLPIQAEDYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+GRT R AG G A V GK Q I E
Sbjct: 333 IGRTGR-AGRDGTAISIVTGKDEKALQAINE 362
>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|384424520|ref|YP_005633878.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
Length = 397
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLFGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
Length = 551
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 200/410 (48%), Gaps = 35/410 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR F LG + ++ ++ RQ F +PS IQA A P +++G + Q+G+GKT A+ LP
Sbjct: 4 SRSGFASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL P+++ILAPT ELA QV + C +K + + + GG
Sbjct: 64 LLARL---------DPALREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGE 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+TQL+ L+ G V++ TPGR M ++ G ++L NL+ +LDE D + F ++ +
Sbjct: 115 YRTQLKGLRGGAQVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLR-MGFIDDVKWV 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P + K+ + + + P + RI G +G
Sbjct: 174 LERTPDDCQLALFSATMP-PVIRKVAD-----QHLKQPKLVRIDNGGA-----TTGTTIR 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
+ A LNK A+ +++E +VF K T E + +R R E
Sbjct: 223 QRYWPVAGLNKLDAVCRILEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEA------L 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
+ + Q+ R E T R K+ R L+ TD +RG+D + HVV +D P DP YV
Sbjct: 277 NGDIPQQQR-----EKTVQRLKDKRFDLLIATDVVARGLDVPRITHVVNYDMPGDPEAYV 331
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
R+GRT R AG G A +FV ++ + ++I R+ +PS +L
Sbjct: 332 HRIGRTGR-AGRQGDAILFVARREQHVLRQIERITRQSIEKMALPSVDDL 380
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 193/412 (46%), Gaps = 46/412 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++E++ ++ + +PS IQ A P V++GK + A Q+G+GKT + LP+
Sbjct: 3 FSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPI--- 59
Query: 330 LRQEELQGLSKST---SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
LQ LSK T S R +IL PT ELA+QV ++ K +P +S VV GG +
Sbjct: 60 -----LQILSKGTPAKSNQVRTLILTPTRELAAQVNASVIDYGKQ-LPLKSTVVFGGVKI 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+L+ATPGR + L + ++ L + DE D + D F ++ ++
Sbjct: 114 NPQMQKLRGGVDILVATPGRLLDLYSQNAVKFDQLEILVFDEADRML-DMGFIHDIKRIL 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI KL + V P ++P D
Sbjct: 173 KILPKNRQTLMFSATFSEEI-RKLAKTL-----VNDPIEISVTPRNTTVKSVKQWIHPVD 226
Query: 507 KTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K+ KK ALL LI++ + +VF T I + +K + H
Sbjct: 227 KS-------KKQALLTHLIQEHSWYQVLVFSR---TKHGANRIATQLGKKG--ITAAAIH 274
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F + LV TD A+RGID + HVV FD P P +YV R
Sbjct: 275 GNKSQGARTRALADFKAGKVN----VLVATDIAARGIDIVELPHVVNFDLPNVPEDYVHR 330
Query: 626 VGRTARGAGGTGKAFIFVVGKQVS-------LAQRIMERNRKGH--PLHDVP 668
+GRT R AG G+A V + L Q+ +ER P HDVP
Sbjct: 331 IGRTGR-AGSKGEAISLVSADEAKQLFDIERLTQKKLERIMVDDFIPSHDVP 381
>gi|226506900|ref|NP_001142117.1| uncharacterized protein LOC100274281 [Zea mays]
gi|194704910|gb|ACF86539.1| unknown [Zea mays]
gi|194707190|gb|ACF87679.1| unknown [Zea mays]
gi|414875847|tpg|DAA52978.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 494
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 203/418 (48%), Gaps = 28/418 (6%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAM 297
++ + E + ++R + + DG + + F+++G +Y+++ + + F+ P+ IQ+
Sbjct: 61 AVAGMTEEEVEAYRRRREITVDGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQ 120
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
+P + G+ I ++GSGKTLAYLLP I + + + S P V++LAPT EL
Sbjct: 121 GWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL----SPGDGPIVLVLAPTREL 176
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
A Q+ +S + GG + Q+ +LQ+GV+++IATPGR + +I+
Sbjct: 177 AVQIQQEATKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTN 235
Query: 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477
L + +LDE D + D FE ++ ++S Q L+ +AT P E+ +L F
Sbjct: 236 LRRVTYLVLDEADRML-DMGFEPQIKKIVSQIRPDRQTLYWSATWPKEV-EQLARNF--- 290
Query: 478 KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
+ P ++++ G E+ + + Q + E+ NK LL+ I S+ ++F +
Sbjct: 291 --LFDP--YKVTIGSEDLKANHAIVQHVEILSESQKYNKLVNLLEDIMDG--SRILIFMD 344
Query: 538 KIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDR 597
C + L R D L H Q R + EF + +S + TD
Sbjct: 345 TKKGCDQTTRQL-RMDGWPA----LSIHGDKSQAERDWVLSEFKSGKSP----IMTATDV 395
Query: 598 ASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
A+RG+D V +V+ +DFP +YV R+GRT R AG G A+ F A+ ++
Sbjct: 396 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGR-AGAKGTAYTFFTAANARFAKELI 452
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 195/395 (49%), Gaps = 36/395 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P +S V+ GG
Sbjct: 62 LLSRG-----NRAQAKKVRALVLTPTRELAAQVAESVETYGKY-LPLKSAVIFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L +G + L ILDE D + D F ++ ++
Sbjct: 116 QISKLGKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRML-DMGFIHDIKKILRV 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT +I KL + V ++ + P + + +E+++ Q
Sbjct: 175 LPAKRQNLMFSATFSDDI-RKLAKGLVNNPVEISVTP-RNATAKSVEQYIYMVDQKQ--- 229
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K +AL+ LI+++ + +VF ++ L+ D + H
Sbjct: 230 ---------KTAALIHLIKQNDWKQVLVFSRTKHGANRIAKNLEAND-----LTAAAIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F A LV TD A+RGID + +VV FD P P +YV R+
Sbjct: 276 NKSQGARTKALANFKNG----AVRVLVATDIAARGIDIDQLPNVVNFDLPNVPEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVSL---AQRIMERN 658
GRT R AG +G+A V G + L +R++++N
Sbjct: 332 GRTGR-AGASGQAVSLVSGDESKLLRDIERLIKQN 365
>gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 398
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 192/377 (50%), Gaps = 34/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++++ + P+ IQ A P + GK+ I A Q+G+GKT +++LP+++
Sbjct: 3 FSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILEI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +K + R +IL PT ELA QV N + SK + S+ + GG K Q
Sbjct: 63 LSEDP----TKVRAKRIRALILTPTRELAIQVEENIQQYSKH-IDITSLAMYGGVDYKEQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + + + + L +LDE D + D F + +I
Sbjct: 118 KQRLIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRML-DMGFIEDINKIIERL 176
Query: 450 PVTAQYLFVTATLPVEI-YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P+ Q + +ATL ++ Y + ++ + P SP ++++L D
Sbjct: 177 PLDRQNMLFSATLSDQVRYLAKTAINNPIEISISPKTTS-SPQIDQWLTTVDKD------ 229
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KKSALL LI+++ ++ ++F K+ + L++ D +R FH+
Sbjct: 230 -------KKSALLSHLIKENNWNQALIFIETKHGAAKLVSQLEKRD-----IRAEAFHSG 277
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
QE R + +F KE +L +LV T A+RGID + VV +D P +YV R+
Sbjct: 278 RSQEARAKVLNDF-----KEGKLQYLVATGIAARGIDIDELTRVVNYDLPFPADDYVHRI 332
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG G+A FV
Sbjct: 333 GRTGR-AGAKGEAISFV 348
>gi|385786988|ref|YP_005818097.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
Length = 638
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 192/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI L + + ++
Sbjct: 177 IPDGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL + +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNS---------AAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|398792258|ref|ZP_10552920.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
gi|398213572|gb|EJN00165.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
Length = 636
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 193/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGINVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI L + + ++
Sbjct: 177 IPDGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYN---------SAAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV FD P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNFDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
borgpetersenii serovar Hardjo-bovis str. L550]
gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
borgpetersenii serovar Hardjo-bovis str. JB197]
Length = 513
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ +LDE D + D F ++ ++ +
Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 176 PIDRQTIMFSATMTEDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 232 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|357130258|ref|XP_003566767.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like
[Brachypodium distachyon]
Length = 828
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 184/380 (48%), Gaps = 31/380 (8%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+++ ++R F P+ IQA ++P ++ + + ++GSGKTL YLLP +++ L
Sbjct: 169 ILKEIQRAGFPSPTPIQAQSWPIALQNQDVVAIAKTGSGKTLGYLLPGFMHIKR-----L 223
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
ST P V++LAPT ELA+Q+L + S + GG + QL +L+ GVD
Sbjct: 224 QNSTRSGPTVLVLAPTRELATQILEEAVKFGRSSR-ISSTCLYGGAPKGPQLRDLERGVD 282
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
V++ATPGR +++ + L + +LDE D + D FE ++ ++ P + Q L
Sbjct: 283 VVVATPGRLNDILEMRKISLKQVSYLVLDEADRML-DMGFEPQIRKIVKDIPSSRQTLMY 341
Query: 459 TATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNK 516
TAT P E+ E V P +V +G ++E + + + Q + + L +
Sbjct: 342 TATWPKEVRRIADELLVHP-VQVTIG--------SVDELVANKAITQHVEVITPSEKLRR 392
Query: 517 KSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
+L+ + SK ++FC C ++ L R H Q R
Sbjct: 393 LEQILRSHDSG--SKILIFCTTKRMCDQLSRTLNRH------FGAAAIHGDKSQNEREKV 444
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
+ +F + RS LV TD A+RG+D + V+ +DFP +YV R+GRT R AG T
Sbjct: 445 LSQFRSGRSP----ILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGR-AGAT 499
Query: 637 GKAFIFVVGKQVSLAQRIME 656
G A+ F+ + A +++
Sbjct: 500 GLAYTFLCDQDAKYAADLIK 519
>gi|386019450|ref|YP_005937474.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 441
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 192/400 (48%), Gaps = 28/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L +L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRML-DLGFAEELDALFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT I E+ D V + + ++++LV ++S+
Sbjct: 176 LPKKRQTLLFSATFSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSE-- 233
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L L+ + + +VF T + V+ ++ + + H
Sbjct: 234 ----------LFLHLLAERRWGQVLVFVK---TRKGVDQLVDELQAQGIASDAI--HGDK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q +RL ++ F + LV TD A+RG+D + VV FD P +YV R+GR
Sbjct: 279 PQASRLRALERFKAGEVQ----VLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
T R AG +G+A V +V I + P HD P
Sbjct: 335 TGR-AGASGEAISLVAADEVDQLAAIETLINQVLPRHDEP 373
>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 496
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 185/384 (48%), Gaps = 42/384 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG S+ +IE L+++N P+ IQ A P V++GK I Q+G+GKTLA++LP+I+
Sbjct: 3 NFKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIE 62
Query: 329 R--LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q+ +Q L I+ PT ELA Q+ R L + + V GG
Sbjct: 63 NFDFNQQSIQAL-----------IVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDV 111
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL L++ V +++ TPGR + I G + L L +LDE D + + F ++ +I
Sbjct: 112 EKQLNKLRKNVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHI-GFLKEVEMII 170
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+P T Q L +AT+P EI + H SP E V+
Sbjct: 171 RETPKTRQTLLFSATIPDEIKTLAKK-------------HMKSP--EYISVERKQGPAKS 215
Query: 507 KTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ F+N K++ L+++I++ ++FC T R+V + + + L
Sbjct: 216 VEQKAVFVNDRAKQATLIEMIKEYRPYLAVIFCR---TKRRVTKLYEALASEGFMCDEL- 271
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L Q R MK F R E +L L+ TD A+RG+D G+ HV +D P D YV
Sbjct: 272 -HGDLSQAKREKVMKRF---RDAEFQL-LIATDVAARGLDVEGITHVFNYDIPEDADSYV 326
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQ 647
R+GRT R AG G A F +Q
Sbjct: 327 HRIGRTGR-AGEKGLAVTFYSPQQ 349
>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
Length = 397
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 183/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIYAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F +++ K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSAKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|345497627|ref|XP_001602045.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nasonia
vitripennis]
Length = 634
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 180/374 (48%), Gaps = 26/374 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 127 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 186
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q LQ P ++LAPT ELA Q+ R+ + GG +
Sbjct: 187 INNQPRLQ-----RGDGPIALVLAPTRELAQQIQQVAADFG-VSSQVRNTCIFGGAPKGP 240
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 241 QARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIIEQ 299
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 300 IRPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDVC 351
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
E K LL+ I + +KTI+F + T RKV+ I + +R + + H
Sbjct: 352 EEYEKEGKLMKLLEEISQEAENKTIIF---VETKRKVDEITRAINRYGW--QAIGIHGDK 406
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q+ R + +F +SRS LV TD A+RG+D V V+ D+P + +YV R+GR
Sbjct: 407 SQQERDYVLNQFRSSRSA----ILVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGR 462
Query: 629 TARGAGGTGKAFIF 642
T R + TG A+ F
Sbjct: 463 TGR-SQRTGTAYAF 475
>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
gi|387869761|ref|YP_005801131.1| cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
Length = 638
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 195/403 (48%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P E ++ + F + P RI L + + ++
Sbjct: 177 IPDGHQTALFSATMP-EAIRRITKRF-----MKDPQEVRIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL + +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNS---------AAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
DSM 14838]
Length = 478
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 192/389 (49%), Gaps = 31/389 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK++ S+ + +L +N+ P+ IQ A P + G+ + Q+G+GKT A+ +P+I+
Sbjct: 3 TFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPR---VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+L + + G+PR +IL PT ELA Q+ + ++ R V+ GG +
Sbjct: 63 QLLADPIS----QQKGAPRKIRALILTPTRELAIQIDESLADYTRYTT-LRHTVIFGGVK 117
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QK+Q + L+ G D+L ATPGR + L+ +G ++L ++R +LDE D + D F ++ L
Sbjct: 118 QKSQTDELRAGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRML-DMGFIHDVKRL 176
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+P I ++L + ++ P ++P +
Sbjct: 177 LPKLPPKKQTLFFSATMPDSI-DRLAK-----SLLRNPARVEVTPASSVVEIISQSVYRV 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+K KK L QL+ + +VF T +NI + R+ + H
Sbjct: 231 EKP------QKKELLAQLLLGEAGHQVLVFSR---TKHGADNIARYLSRRG--ITCESIH 279
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q +R + F RS ++ TD A+RGID G+D V+ +D P P YV R
Sbjct: 280 GDKSQNSRQRALSNFKEGRSN----VIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHR 335
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG G+A F G++V + + I
Sbjct: 336 IGRTGR-AGCEGRAIAFCSGEEVPMLREI 363
>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227117872|ref|YP_002819768.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|360035301|ref|YP_004937064.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741202|ref|YP_005333171.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|417813420|ref|ZP_12460077.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|417816285|ref|ZP_12462917.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418332432|ref|ZP_12943366.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418337176|ref|ZP_12946074.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418343691|ref|ZP_12950475.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418348844|ref|ZP_12953578.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418354675|ref|ZP_12957396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419825886|ref|ZP_14349390.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421316168|ref|ZP_15766739.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421321010|ref|ZP_15771567.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421325005|ref|ZP_15775531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421328665|ref|ZP_15779179.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421331689|ref|ZP_15782169.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421335261|ref|ZP_15785728.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|421339154|ref|ZP_15789589.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421347136|ref|ZP_15797518.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|421351170|ref|ZP_15801535.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|422891511|ref|ZP_16933888.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422902722|ref|ZP_16937717.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422906599|ref|ZP_16941429.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422913183|ref|ZP_16947702.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422925663|ref|ZP_16958688.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423144985|ref|ZP_17132594.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423149664|ref|ZP_17136992.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423153477|ref|ZP_17140671.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423156291|ref|ZP_17143395.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423160116|ref|ZP_17147084.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|423164838|ref|ZP_17151592.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423730969|ref|ZP_17704283.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423756947|ref|ZP_17712305.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423892657|ref|ZP_17726340.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423927434|ref|ZP_17730956.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424001983|ref|ZP_17745069.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|424006141|ref|ZP_17749121.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|424024159|ref|ZP_17763819.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|424027008|ref|ZP_17766621.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|424586282|ref|ZP_18025871.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424590898|ref|ZP_18030333.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|424594984|ref|ZP_18034317.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424598849|ref|ZP_18038042.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424601586|ref|ZP_18040738.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424606581|ref|ZP_18045540.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424610409|ref|ZP_18049263.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424613216|ref|ZP_18052019.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424617030|ref|ZP_18055717.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424621981|ref|ZP_18060504.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424644955|ref|ZP_18082703.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424652635|ref|ZP_18090111.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424656538|ref|ZP_18093836.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440709660|ref|ZP_20890317.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443503491|ref|ZP_21070470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443507392|ref|ZP_21074176.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443511519|ref|ZP_21078174.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443515074|ref|ZP_21081601.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443518872|ref|ZP_21085282.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443523762|ref|ZP_21089989.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443531373|ref|ZP_21097388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443535149|ref|ZP_21101042.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443538716|ref|ZP_21104571.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449056110|ref|ZP_21734778.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|340042011|gb|EGR02977.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|340042724|gb|EGR03689.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|341623276|gb|EGS48838.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341623497|gb|EGS49030.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341624424|gb|EGS49921.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341639620|gb|EGS64237.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341647245|gb|EGS71331.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356419243|gb|EHH72801.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356419329|gb|EHH72877.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356424728|gb|EHH78127.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356431693|gb|EHH84897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356432754|gb|EHH85951.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356436105|gb|EHH89232.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356441965|gb|EHH94841.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356447583|gb|EHI00374.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356448499|gb|EHI01266.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356453077|gb|EHI05740.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|356454277|gb|EHI06926.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|356646455|gb|AET26510.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794712|gb|AFC58183.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|395920675|gb|EJH31497.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395921125|gb|EJH31945.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395923992|gb|EJH34803.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395930171|gb|EJH40920.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395932953|gb|EJH43696.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395937122|gb|EJH47845.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|395944102|gb|EJH54776.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395946196|gb|EJH56860.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395951615|gb|EJH62229.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|395960173|gb|EJH70554.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395961352|gb|EJH71682.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395964650|gb|EJH74853.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395972076|gb|EJH81692.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|395975568|gb|EJH85055.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395977266|gb|EJH86681.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|408008183|gb|EKG46193.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408014375|gb|EKG52018.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408033764|gb|EKG70289.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|408034000|gb|EKG70511.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408043335|gb|EKG79334.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408044633|gb|EKG80531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408055276|gb|EKG90211.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408609967|gb|EKK83343.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408625357|gb|EKK98270.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408638092|gb|EKL10073.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408656293|gb|EKL27390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408657569|gb|EKL28648.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408846890|gb|EKL86969.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|408848066|gb|EKL88121.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|408871524|gb|EKM10761.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|408879899|gb|EKM18842.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|439975249|gb|ELP51385.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443432223|gb|ELS74754.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443436425|gb|ELS82548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443439694|gb|ELS89392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443443716|gb|ELS97002.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443447921|gb|ELT04563.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443450313|gb|ELT10590.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443458456|gb|ELT25852.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443461764|gb|ELT32822.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443466305|gb|ELT40964.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448263933|gb|EMB01172.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
Length = 397
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|402773718|ref|YP_006593255.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401775738|emb|CCJ08604.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 514
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 42/382 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG S ++ +++ + P+ IQA A PP ++G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFEELGLSQKVLAAVQTSGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPMLS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL ++ + PR +IL PT ELA+QV + S +K G R V + GG
Sbjct: 62 RLES------GRARARMPRTLILEPTRELAAQVEA---SFAKYGKNHRLNVALLIGGVAF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + G L L + ++DE D + D F ++ +
Sbjct: 113 GEQETKIMRGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRML-DMGFIPDIERVC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD----CKVVMGPGMHRISPGLEEFLVDCSGD 502
P T Q LF +AT+P EI +L E F C+V + + + LV G
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-TRLTEAFLHNPIRCEVSRA---ATTATTIRQALVASRGH 227
Query: 503 QESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+K+ L LI E I+FCN+ R V + + +
Sbjct: 228 A-----------DKRETLRTLIREAENFKNAIIFCNR---KRDVATLHRSLVKHGFSAGA 273
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
L H +DQ R+A++ F T +VC+D A+RG+D V HV+ FD P +
Sbjct: 274 L--HGDMDQLARMASLDAFKTGDVS----LIVCSDVAARGLDIPDVSHVLNFDVPTHSED 327
Query: 622 YVRRVGRTARGAGGTGKAFIFV 643
YV R+GRT R AG +G A V
Sbjct: 328 YVHRIGRTGR-AGRSGVAITLV 348
>gi|395792193|ref|ZP_10471631.1| hypothetical protein MEI_00252 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714198|ref|ZP_17688457.1| hypothetical protein ME1_01203 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421345|gb|EJF87601.1| hypothetical protein ME1_01203 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432707|gb|EJF98682.1| hypothetical protein MEI_00252 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 467
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 194/383 (50%), Gaps = 36/383 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S +I+++K + P+ IQ+ P V++ K + Q+G+GKT +++LP
Sbjct: 4 SLKSFDDLGLSTKVIKAVKSAGYTVPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFVLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGG 383
++ L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 64 MLTLLEK------GRARARMPRTLILEPTRELAAQVEEN---FDKYGINHRLNVALLIGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q L+ G DVLIATPGR + + G L ++ + ++DE D + D F ++
Sbjct: 115 VSFEQQDRKLERGADVLIATPGRLLDHFERGKLLMMGVEILVIDEADRML-DMGFIPDIE 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGD 502
+ +P T Q LF +AT+ EI +KL + F V V + + + LV SG+
Sbjct: 174 RICKLTPFTRQTLFFSATMAPEI-SKLTKQFLHSPVSVEVTKASSTATTITQRLVK-SGN 231
Query: 503 QESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
D K++ L +LI E + I+FCN+ + + + + R V
Sbjct: 232 NSWD---------KRAVLRELIRNEGDELKNAIIFCNR---KKDISELFRSLIRHNFSVG 279
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
L H +DQ R++ + +F ++ K LV +D A+RG+D V HV +D P
Sbjct: 280 AL--HGDMDQHARMSTLADFKNNKLK----LLVASDVAARGLDIPAVSHVFNYDVPTHAE 333
Query: 621 EYVRRVGRTARGAGGTGKAFIFV 643
+Y+ R+GRT R A +GKAF V
Sbjct: 334 DYIHRIGRTGR-ANRSGKAFTIV 355
>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
asaccharolytica PR426713P-I]
gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
asaccharolytica DSM 20707]
gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
asaccharolytica PR426713P-I]
gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 438
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 187/383 (48%), Gaps = 43/383 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D +++ L NF+ S IQ+ PP++EG+ I Q+GSGKT AYLLP + +
Sbjct: 3 FYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFLNK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG---GFRQ 386
+ ++E L K G+ V++APT ELA Q+ V ++ + G G
Sbjct: 63 VARQE---LPKEHLGA---VVMAPTRELAKQIDQEVEGFGYY-VSVSTLAIYGGTDGIAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q + G D++IATPGR + +++ G L +++ +LDE D + D F + +
Sbjct: 116 EQQRRGMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRML-DMGFYEDIMEIY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q++ +AT+P EI KL E +++ P LV+ + +
Sbjct: 175 KALPEDCQHVMFSATMPKEIL-KLSE-----SILVDP-----------VLVELAVAKPPK 217
Query: 507 KTPETAFLNKKSALLQLIE------KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+TA++ + L +I +S VS+TI+F T + L R +
Sbjct: 218 SIMQTAYICYDAQKLPIIRSLFTNPESEVSRTIIFAGTKATVHALAQTLSR-----DGLP 272
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
V H+ L QE R +++F R K LV TD +RGID + V+ ++ PRD
Sbjct: 273 VAEMHSDLSQERREEVLRDFRMGRIK----VLVATDIVARGIDIDDIAVVINYEVPRDFE 328
Query: 621 EYVRRVGRTARGAGGTGKAFIFV 643
+YV R+GRTARGA G G A V
Sbjct: 329 DYVHRIGRTARGADGKGLAITLV 351
>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 707
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/387 (29%), Positives = 190/387 (49%), Gaps = 34/387 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++K+ F PS IQA P ++EG + Q+G+GKT A+ LP++
Sbjct: 75 SFDGLGLPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILS 134
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ +SK P+ ++LAPT ELA QV + +S S+ + + GG
Sbjct: 135 RI------DVSKR---HPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGV 185
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR + +++G L + LR +LDE D + N F+ ++ ++
Sbjct: 186 QLSGLRRGAHIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLN-MGFQEDVERILED 244
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q +AT+P I + D + + R S +E+ + S
Sbjct: 245 TPSDKQVALFSATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVS-------- 296
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K AL +++E + I+F + T + E + + R+R F+AA
Sbjct: 297 ----HRDKLDALTRILEITEFEAMIMF---VRTKNETEELAE-------RLRARGFNAAA 342
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
N++E T + K+ RL LV TD A+RG+D + HV +D P D YV R+G
Sbjct: 343 INGDIPQNLRERTVDQLKDGRLDILVATDVAARGLDVDRITHVFNYDIPHDTESYVHRIG 402
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG G+A +FV ++ L + I
Sbjct: 403 RTGR-AGRKGRAILFVTPRERRLLKSI 428
>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
Length = 476
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 189/391 (48%), Gaps = 33/391 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ +++ + P+ IQA A P V+E + + Q+G+GKT ++ LP+I
Sbjct: 2 SFSTLGLSEKVLAAVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMIT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N ++ GV + V + GG
Sbjct: 62 LLEK------GRARARMPRTLILEPTRELAAQVEDN---FNRYGVNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 AEQDRKLERGADVLIATPGRLLDHFERGKLLLQGVDILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q LF +AT+P EI +L + F + P ++ + + +
Sbjct: 172 KLIPFTRQTLFFSATMPSEI-QRLTDTF-----LQNPA--KVEVAKASTTAETVTQRIAA 223
Query: 507 KTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
PE K++ L +LIE + + IVFCN+ R V + + R E V L H
Sbjct: 224 AEPED--YEKRAKLRELIEGAEDLQNAIVFCNR---KRDVATLFRSLVRHEFSVGAL--H 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+DQ +R+ + F K LV +D A+RG+D V HV FD P +YV R
Sbjct: 277 GDMDQRSRMTMLDNFKKGNIK----ILVASDVAARGLDIPSVSHVFNFDLPIQAEDYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
+GRT R AG G A V GK Q I E
Sbjct: 333 IGRTGR-AGRDGTAISIVTGKDEKALQAINE 362
>gi|403382424|ref|ZP_10924481.1| ATP-dependent RNA helicase [Paenibacillus sp. JC66]
Length = 442
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 178/361 (49%), Gaps = 38/361 (10%)
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
++P++IQ PP++ G I Q+G+GKTLA++LP++QRLR ++ G
Sbjct: 2 GIVQPTEIQERCIPPLLHGHDVIGRAQTGTGKTLAFVLPILQRLRPDQ---------GEV 52
Query: 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
+ +I+APT ELA Q+ + + ++ R + V GG + Q+ L+ V +++ TPGR
Sbjct: 53 QALIVAPTRELALQITAEIKKVTADSEDCRVLAVYGGQDVEKQMRQLKNQVQLVVGTPGR 112
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
+ ++ G L L L +LDE D + + F +++++ ++P + Q + +AT+P ++
Sbjct: 113 LLDHLRRGTLNLGRLSMLVLDEADQMLHI-GFLNEVEAILDATPSSRQTMLFSATMPQQV 171
Query: 467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
+L E + + P R+ + Q ET K SAL QL+++
Sbjct: 172 -QRLAEQY-----MNNPQTIRVQEN------QITVQQTKQIAVETTDRGKLSALTQLLDR 219
Query: 527 SPVSKTIVFCNKIVTCRKVENILKR--FDRKETRVRVLPFHAALDQETRLANMKEFTTSR 584
+VFC K+ L+ +D E H L Q R MK F
Sbjct: 220 YRPYLAVVFCRTKRRASKLNEQLQEAGYDSDE-------LHGDLSQAKREQVMKRF---- 268
Query: 585 SKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFV 643
+EA+L LV TD A+RG+D GV HV +D P D Y+ RVGRT R AGG G A V
Sbjct: 269 -REAKLQVLVATDVAARGLDVEGVTHVFNYDMPLDTESYIHRVGRTGR-AGGDGLAVTLV 326
Query: 644 V 644
Sbjct: 327 T 327
>gi|359729283|ref|ZP_09267979.1| ATP-dependent RNA helicase [Leptospira weilii str. 2006001855]
Length = 535
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 28 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 87
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 88 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 138
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ +LDE D + D F ++ ++ +
Sbjct: 139 LKALRKNPQIVIATPGRMMDHMRRGSIRLDDIKIVVLDEADEML-DMGFREDMEFILKDT 197
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 198 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 253
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 254 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 299
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 300 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 355
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 356 TGR-AGKKGIAFSFIVGKQIYNLKKI 380
>gi|357236526|ref|ZP_09123869.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
gi|356884508|gb|EHI74708.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
Length = 519
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 199/407 (48%), Gaps = 38/407 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL ++ +++++++ F+ PS IQ M P +EGK I Q+G+GKT A+ LP + +
Sbjct: 3 FTELNLAENILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC-RSLSKCGVPFRSMVVTGGFRQKT 388
+ + + + +++APT ELA Q R + GV RS V GG +
Sbjct: 63 I---------DTANNVIQALVIAPTRELAVQSQEELFRFGREKGVKVRS--VYGGSSIEK 111
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ G +++ TPGR + LIK L+L + ILDE D + N F ++++IS
Sbjct: 112 QIKALRSGAHIVVGTPGRLLDLIKRRALKLNTVETLILDEADEMLN-MGFLEDIEAIISH 170
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I V+ D + V S +E+F V ++ D
Sbjct: 171 VPNERQTLLFSATMPDAIKRIGVKFMKDPEHVKIAAKELTSDMVEQFYVRVKEREKFD-- 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ +LI+ +IVF T R+V+ + + + R + H L
Sbjct: 229 ----------TMTRLIDVEQPELSIVFGR---TKRRVDELTRGLKLRGYRAEGI--HGDL 273
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
DQ RL +++F LV TD A+RG+D +GV HV +D P+DP Y+ R+GR
Sbjct: 274 DQNKRLRVIRDFKNDNLD----ILVATDVAARGLDISGVTHVYNYDIPQDPESYIHRIGR 329
Query: 629 TARGAGGTGKAFIFVVGKQ---VSLAQRIMERNRKGHPLHDVPSAFE 672
T R AG +G++ FV + +S+ + + ++ KG AF+
Sbjct: 330 TGR-AGKSGQSITFVSPNEMGYLSIIENLTKKRMKGLKPATADEAFQ 375
>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
NOR5-3]
gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
NOR5-3]
Length = 435
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 197/406 (48%), Gaps = 34/406 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + +++ + + P+ IQ + P V++G+ + A Q+G+GKT A++LP++Q
Sbjct: 2 NFDTLGLLPDLAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL GL+K+ G R ++L PT ELA+QV ++ + + + RS VV GG + +
Sbjct: 62 RL---AFVGLAKA--GQVRTLVLTPTRELAAQVHASVEAYGQY-LDLRSAVVFGGVKAEP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVD L+ATPGR + L ++G + L +LDE D + D F ++ ++
Sbjct: 116 QIAALARGVDTLVATPGRLLDLAQQGAVDFSALEVLVLDEADRML-DMGFIHDIRRIVDQ 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D V + + +++ D+++D
Sbjct: 175 LPENRQTLMFSATFSNEIRALAAQYLIDPVSVEVAAANSTTELVQQMAYPVDRDRKTD-- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK--ETRVRVLPFHA 566
L+ L++ S+ ++FC + ++ R +K + P H
Sbjct: 233 ----------LLIHLLKYHQWSQVLIFC-------RTKHGANRLTKKLLAAGFKAAPIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + EF T + + LV TD A+RG+D + VV FD P P +YV R+
Sbjct: 276 NKSQNARQRALDEFKTGKLQ----LLVATDIAARGLDINQLPEVVNFDLPCVPQDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
GRT R AG TG++ + + + L Q I +K P V S FE
Sbjct: 332 GRTGR-AGATGRSHSLLASEDLPLLQGIERLIQKAIPRVQV-SGFE 375
>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
Length = 436
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 188/389 (48%), Gaps = 36/389 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG S+ ++ ++ + P+ IQ A P ++EG+ + Q+G+GKT A+ LP+I R
Sbjct: 4 FQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ E+ + + K T R +ILAPT EL +Q+ N S K P R V GG Q
Sbjct: 64 LQAEKKKAVPKGT----RALILAPTRELVNQIAKNLISFLKH-TPLRVSSVVGGVSINGQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L +G D+L+ATPGR + L+ + L +LDE D + D F AL+ +
Sbjct: 119 IKRLSKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQML-DLGFIHALRRIAGLV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT+P +I N+L + + + P ++P +G T
Sbjct: 178 ADKRQTLLFSATMPKQI-NELAQSY-----LRNPERVEVAP---------AGKTADKVTQ 222
Query: 510 ETAFLNKKSA---LLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
F++K S L+ + P ++VFC T E ++++ + + H
Sbjct: 223 SVHFMDKNSKGDFLVDQLRDKPDGLSLVFCR---TKHGAERLMRKLS--HSGISAGSIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R +KE +E + LV TD A+RGID GV HV F+ P YV R
Sbjct: 278 NKSQNQRDRAIKEL-----REGTINVLVATDVAARGIDIPGVSHVYNFELPEVAEAYVHR 332
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRTAR AG G+A +++ L ++I
Sbjct: 333 IGRTAR-AGAEGEAIALCAPEEIGLFRQI 360
>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 557
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 189/400 (47%), Gaps = 36/400 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY+++ +K Q F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 118 TFDEAGFPDYVLQEVKDQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIV 177
Query: 329 RLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q +LQ P V++LAPT ELA Q+ + C K R+ V GG +
Sbjct: 178 HINAQPQLQ-----YGDGPIVLVLAPTRELAVQIQTECAKFGKSSR-IRNTCVYGGAPKG 231
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +L GV++ IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 232 PQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVD 290
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMG----PGMHRISPGLEEFLVDCSGD 502
Q L +AT P E+ + D +V +G H I+ L E + + S
Sbjct: 291 QIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQ-LVEVIDEFSKR 349
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K E+A LN++ +K +VF + TC ++ L + L
Sbjct: 350 DRLVKHLESA-LNERE-----------NKILVFASTKRTCDEITTYL-----RSDGWPAL 392
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H DQ R + EF ++ +V TD A+RGID G+ HV+ +D P + +Y
Sbjct: 393 AIHGDKDQSERDWVLDEFRKGKTS----IMVATDVAARGIDVKGITHVINYDMPGNIEDY 448
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH 662
V R+GRT RG G +G A F L + + R+ H
Sbjct: 449 VHRIGRTGRG-GASGTAISFFTDGNSKLGGDLCKIMREAH 487
>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
Length = 512
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 184/378 (48%), Gaps = 28/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E DY+ + +K + P+ IQA +P + GK+ + Q+GSGKTLAY+LP I
Sbjct: 80 QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 139
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + P ++LAPT ELA Q+ R+ V GG ++
Sbjct: 140 VHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKR 194
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV+++IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 195 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIE 253
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESD 506
Q L +AT P E+ KL E + + + G ++S +VD + E +
Sbjct: 254 QIRPDRQTLMWSATWPKEV-KKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKE 312
Query: 507 KTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
NK + LLQ I +S P +KTI+F + T RK ENI + R +
Sbjct: 313 --------NKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRRYGWPAVCM-- 359
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q+ R + +F R+ LV TD A+RG+D G+ +V+ FD+P +Y+
Sbjct: 360 HGDKTQQERDEVLYQFKEGRAS----ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 415
Query: 625 RVGRTARG-AGGTGKAFI 641
R+GRT R + GT AF
Sbjct: 416 RIGRTGRSKSKGTSYAFF 433
>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
Length = 441
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/393 (31%), Positives = 199/393 (50%), Gaps = 35/393 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PRV+ILAPT ELA+QV + S+ +P +S VV GG +
Sbjct: 62 RLAE------NPRTGKGPRVLILAPTRELAAQVHDSVALYSRY-MPTKSAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILAL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI L E D V V + + +++ + D+
Sbjct: 174 LPAKRQNLLFSATFSNEIRT-LAEGLLDNPVQVEVAARNTAAESIKQSVYPV------DQ 226
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ +TA L+K L+ + + +VF T + ++ +R + H
Sbjct: 227 SQKTALLSK------LVRDNGWEQVLVFTR---TKHGANRLTQKLERDG--ITAAAIHGN 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F + E R+ LV TD A+RG+D + VV F+ P P +YV R+G
Sbjct: 276 KSQGARTRALADF---KQGEVRV-LVATDIAARGLDIKQLPQVVNFELPNVPEDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVV---GKQVSLAQRIMER 657
RT R AG +G A V GK ++ +R++++
Sbjct: 332 RTGR-AGESGHALSLVSADEGKMLAGIERLIKK 363
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 196/408 (48%), Gaps = 35/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+++ATPGR + +++ + L NL +LDE D + D F ++ ++
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML-DMGFIHDIKRVL 175
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL-VDCSGDQES 505
+ P Q L +AT EI L + D SP L E + + + +
Sbjct: 176 AKLPPQRQNLLFSATFSDEI-KSLADSLLD------------SPALIEVARRNTTAESVA 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
K K+ L LI + + +VF K R E + K + +
Sbjct: 223 QKIHPVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTK------DGISAMAI 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF +S + LV TD A+RGID + HVV FD P P +YV
Sbjct: 277 HGNKSQSARTRALAEFKSSTLQ----VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 332
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
R+GRT R AG TG+A V + L R +ER K +V + FE
Sbjct: 333 RIGRTGR-AGATGEAVSLVCVDEKQLL-RDIERLIKREIPQEVIAGFE 378
>gi|423711385|ref|ZP_17685705.1| hypothetical protein MCQ_00432 [Bartonella washoensis Sb944nv]
gi|395415299|gb|EJF81734.1| hypothetical protein MCQ_00432 [Bartonella washoensis Sb944nv]
Length = 467
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 195/382 (51%), Gaps = 38/382 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF +LG S+ +I+++K + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 6 KSFDDLGLSEKVIKAVKSAGYTIPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFVLPML 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFR 385
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 66 TLLEK------GRARARMPRTLILEPTRELAAQVEEN---FDKYGINHRVNVALLIGGVS 116
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q L+ G DVLIATPGR + + G L L+ + ++DE D + D F ++ +
Sbjct: 117 FEHQERKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRML-DMGFIPDIERI 175
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQE 504
+P T Q LF +AT+ EI KL + F V V + + + LV SG++
Sbjct: 176 CKLTPFTRQTLFFSATMAPEI-TKLTKQFLHFPVSVEVTKASSTATTITQRLVK-SGNKA 233
Query: 505 SDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
D K++ L +LI E + I+FCN+ R + + + R V L
Sbjct: 234 WD---------KRAVLRELIHNEGEELKNAIIFCNR---KRDISELFRSLVRHNFSVGAL 281
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H +DQ +R+ + +F K+ +L LV +D A+RG+D V HV +D P +
Sbjct: 282 --HGDMDQYSRMNTLADF-----KDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAED 334
Query: 622 YVRRVGRTARGAGGTGKAFIFV 643
Y+ R+GRT R A +GKAF V
Sbjct: 335 YIHRIGRTGR-ANRSGKAFTIV 355
>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
Length = 397
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEHQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 196/408 (48%), Gaps = 35/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+++ATPGR + +++ + L NL +LDE D + D F ++ ++
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML-DMGFIHDIKRVL 175
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL-VDCSGDQES 505
+ P Q L +AT EI L + D SP L E + + + +
Sbjct: 176 AKLPPQRQNLLFSATFSDEI-KSLADSLLD------------SPALIEVARRNTTAESVA 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
K K+ L LI + + +VF K R E + K + +
Sbjct: 223 QKIHPVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTK------DGISAMAI 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF +S + LV TD A+RGID + HVV FD P P +YV
Sbjct: 277 HGNKSQSARTRALAEFKSSTLQ----VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 332
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
R+GRT R AG TG+A V + L R +ER K +V + FE
Sbjct: 333 RIGRTGR-AGATGEAVSLVCVDEKQLL-RDIERLIKREIPQEVIAGFE 378
>gi|452824515|gb|EME31517.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 624
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 192/402 (47%), Gaps = 41/402 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E ++ ++K N+L+P+ +Q A P ++ G+ + Q+GSGKT A+LLP I
Sbjct: 170 SFDESNLHSRILTNVKLSNYLKPTPVQKNAIPVILNGRDMMACAQTGSGKTAAFLLPTIH 229
Query: 329 RLRQ--------EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSM 378
+ + E+ S P ++LAPT ELA Q+ R C +P
Sbjct: 230 NMLKMGGPAPVPEKPLDRGYSKIQFPTTLVLAPTRELAMQIYQEARKFCYCTGIIP---C 286
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
V+ GG + Q E++ +G D+L+ATPGR + +I+ G + L+N++ ILDE D + D F
Sbjct: 287 VIYGGINIRIQFESVAKGCDILVATPGRLVDMIERGKISLMNIKFLILDEADRML-DMGF 345
Query: 439 EVALQSLISSS--PVTA--QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
E ++ ++ + P T Q L +AT P EI +L F + + G R+ +
Sbjct: 346 EPQIRQIVERTDMPTTGERQTLMFSATFPKEI-QRLASDFLYDYIFLAVG--RVGSTTDF 402
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
L +E + K+ LL LI+ + T++F ++E L R
Sbjct: 403 ILQRLERVEEHE---------KRDFLLNLID-TVSGLTLIFMQTKRGADELEYFLTR--- 449
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
+ H Q R + F T R+ LV TD A+RG+D V HVV FD
Sbjct: 450 --KGYPAISIHGDRSQVEREEALHSFRTGRTP----ILVATDVAARGLDIPNVTHVVNFD 503
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
P D +YV R+GRT R AG +G A F+ + +A+ +++
Sbjct: 504 MPTDVDDYVHRIGRTGR-AGNSGLATAFLNDNNIGIARSLID 544
>gi|423686566|ref|ZP_17661374.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371494634|gb|EHN70232.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 398
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 191/377 (50%), Gaps = 34/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++++ + P+ IQ A P + GK+ I A Q+G+GKT +++LP+++
Sbjct: 3 FSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILEI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +K + R +IL PT ELA QV N + SK + S+ + GG K Q
Sbjct: 63 LSEDS----TKVRAKRIRALILTPTRELAIQVEENIQQYSKH-IDITSLAMYGGVDYKDQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + + + + L +LDE D + D F + +I
Sbjct: 118 KQRLIEGVDVLVATPGRLLDMYTQRAIHFDELDILVLDEADRML-DMGFIEDINKIIERL 176
Query: 450 PVTAQYLFVTATLPVEI-YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P+ Q + +ATL ++ Y + ++ + P SP ++++L D
Sbjct: 177 PLDRQNMLFSATLSDQVRYLAKTAINNPIEISISPKTTS-SPQIDQWLTTVDKD------ 229
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
KKSALL LI+++ + ++F K+ + L++ D +R FH+
Sbjct: 230 -------KKSALLSHLIKENNWDQALIFIETKHGAAKLVSQLEKRD-----IRAEAFHSG 277
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
QE R + +F KE +L +LV T A+RGID + V+ +D P +YV R+
Sbjct: 278 RSQEARAKVLNDF-----KEGKLQYLVATGIAARGIDIDELTRVINYDLPFPADDYVHRI 332
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG G+A FV
Sbjct: 333 GRTGR-AGAKGEAISFV 348
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 185/376 (49%), Gaps = 29/376 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANASASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E L+ G +VL+ATPGR + +++ + L + +LDE D + D F L+ +I
Sbjct: 135 PQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIR 193
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI KL + + V + + + + + SGD
Sbjct: 194 LLPTQRQGLLFSATFSNEI-RKLGRSYLNHPVEIEVAARNATATTITQIAYKMSGDA--- 249
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K++A++ L++ + + IVF N + ++ L+R V+ H
Sbjct: 250 ---------KRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-----DGVKAESIHG 295
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ ++ F + LV TD A+RG+D AGV V+ +D P + +YV R+
Sbjct: 296 DKTQADRMKALEAFKAGELE----VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI 351
Query: 627 GRTARGAGGTGKAFIF 642
GRT R AG +G+A
Sbjct: 352 GRTGR-AGASGEAIAL 366
>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
Length = 488
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 188/383 (49%), Gaps = 36/383 (9%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K+F+E SD +I +L + P+++Q P +EGK I+ Q+GSGKT++Y +P+
Sbjct: 9 KKTFEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPL 68
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+++ EE P+V++L PT ELA QV + ++ + ++ V G
Sbjct: 69 CEKVDWEE---------NKPQVLVLVPTRELAIQVKEDLMNVGRLK-RVKATAVYGKASF 118
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
TQ L++ +++ TPGR + +++G ++ + C +LDE D + N F ++++I
Sbjct: 119 DTQKSELKQKSHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLN-MGFADQVEAII 177
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ P Q L +AT+P EI ++ + PD + ++ P ++ S +
Sbjct: 178 NFLPAERQTLLFSATMPKEI-ERIASFYMKPDKQSIVIETTELSKPK----IIQSSVKVQ 232
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
DK K+ LL L+ ++FCN T V N+ ++ + +
Sbjct: 233 EDK--------KEQQLLDLLTVENADSCMIFCN---TQEAVNNLYTFLNK--AGLPIDKI 279
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H + QE R + M +F R + +LV TD A+RGID V HVV FD P + +V
Sbjct: 280 HGGMVQEDRFSVMDDFRQGRFR----YLVATDVAARGIDIENVTHVVNFDVPVEKESFVH 335
Query: 625 RVGRTARGAGGTGKAFIFVVGKQ 647
R GRT R AG TG A V K+
Sbjct: 336 RTGRTGR-AGKTGMALTLVTPKE 357
>gi|453331172|dbj|GAC86751.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 417
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 198/388 (51%), Gaps = 44/388 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 46 FAAFGLISPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E S G PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 106 LSKGE------SVHG-PRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 157
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ +GVD+++AT GR + L+ +G L L L +LDE D L DEDF ++ +L
Sbjct: 158 VRSIVDGVDIVVATHGRLLDLVTQGELVLEYLTYLVLDEADRLL-DEDFSESMTALTPYF 216
Query: 450 P-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF----LVDCSGDQE 504
P V Q +F +ATLP + + V D R+ E F + + E
Sbjct: 217 PDVPPQTVFCSATLPEPVMDLAKRVTRDPV--------RVEVAAETFTPKKIRQRAMFVE 268
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD-RKETRVRVLP 563
+ PET + +++++ P +++VF + IL++ + R ET
Sbjct: 269 KEDKPET--------VARILQRFP-GRSMVFTRTKANVDLLARILRKHNIRSET------ 313
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F R LV TD ASRG+D + VD V+ D P P YV
Sbjct: 314 LHGDRTQGARNKALDLFRQGRVP----VLVTTDIASRGLDISDVDLVINMDMPETPEAYV 369
Query: 624 RRVGRTARGAGGTGKAFIFV-VGKQVSL 650
R+GRTAR AG G AF + + +++SL
Sbjct: 370 HRIGRTAR-AGKKGAAFSLINIDERLSL 396
>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 460
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 187/379 (49%), Gaps = 36/379 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG + ++++L QN P++IQ A P + GK + + ++GSGKTLA++LP++
Sbjct: 18 FKDLGLDNRLLKNLAHQNIKTPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLH- 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + SK+ PR VILAPT ELA QV S+ R++ G+ + + ++TGG Q
Sbjct: 77 -KSLKTKSFSKN---DPRAVILAPTRELAKQVYSHLRAML-GGLTYDATLITGGENFNDQ 131
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI-SS 448
+ L++ ++ATPGR ++ L L L ILDE D + D F LQ + ++
Sbjct: 132 VNALRKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRML-DLGFAEHLQKIHKAA 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
S Q L +ATL + NK D P RIS GL S D+ D T
Sbjct: 191 SHRRRQTLMFSATLDHDAVNKFAGNMLD-----NPK--RISVGL-------SNDEHKDIT 236
Query: 509 PETAF---LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
L+ K A+L ++IE + ++F ++ +L E ++ +
Sbjct: 237 QRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRLTKLL-----NEENLKAVAL 291
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q R M +F + LV TD ASRG+D V HV+ FD P+ EYV
Sbjct: 292 SGDMNQTARNNIMSQF----ERRVHKILVTTDVASRGLDLTSVTHVINFDMPKHMEEYVH 347
Query: 625 RVGRTARGAGGTGKAFIFV 643
RVGRT R AG G A V
Sbjct: 348 RVGRTGR-AGKKGTAISLV 365
>gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 763
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 183/382 (47%), Gaps = 40/382 (10%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R F +LG S+ + ++ +L P+ IQA A P V+ G+ + Q+G+GKT ++ LP+
Sbjct: 222 RPLFADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPM 281
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ L ++ + PR +IL PT ELA QV N + + ++ GG
Sbjct: 282 MDILSDR------RARARMPRSLILEPTRELALQVAENFVKYGQY-LKLNHALLIGGESM 334
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L +GVDVLIATPGR + L G L L + R ++DE D + D F ++ ++
Sbjct: 335 NDQRDVLSKGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRML-DMGFIPDVERIV 393
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG--MHRISPGLEEFLVDCSG 501
S P Q LF +AT+ EI +L + F P V P I+ GL LV
Sbjct: 394 SLLPHNRQTLFFSATMAPEI-RRLADAFLQNPKEITVAKPASVATTITSGL--ALV---- 446
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
++K+ AL L+ + V ++FCN+ R V+ + K +
Sbjct: 447 ----------GEMDKRKALRHLLRQEKVQNALIFCNR---KRDVDILTKSLVKHG--FAA 491
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
P H L Q R + +++F + LVC+D A+RGID G+ HV FD P +
Sbjct: 492 GPLHGDLAQSLRFSTLEKFKAGSLQ----LLVCSDVAARGIDIGGLSHVFNFDVPIHAED 547
Query: 622 YVRRVGRTARGAGGTGKAFIFV 643
YV R+GRT R AG G AF
Sbjct: 548 YVHRIGRTGR-AGREGAAFTLA 568
>gi|451812523|ref|YP_007448977.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778425|gb|AGF49373.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 422
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 192/392 (48%), Gaps = 39/392 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+++G + + +LK F+ P+ +Q P + GK I++ Q+GSGKT A++LPV+Q
Sbjct: 2 SFEKIGINSNIFSALKTAGFISPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF-RSMVVTGGFRQK 387
L Q+ KS + +P+V++L PT ELA Q+ + + +P+ R + GG +
Sbjct: 62 MLSQK-----PKSNNINPQVLVLTPTRELALQI-TKATAAYGINMPWLRIATIVGGMPYR 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L + VD+L+ATPGR + ++ + L N++ +LDE D + D F +++++
Sbjct: 116 NQIKALSKRVDILVATPGRLIDQMRSNKVSLANIQTLVLDEADRML-DMGFIEDIETIVK 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q + +AT+ I K +M H + S Q+ D
Sbjct: 175 NTPKDRQTMLFSATIDESIARL-------AKKMMNNPQH---------IALTSSKQKHDN 218
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+ F +K L ++ +S + + I+F + K+ L E V
Sbjct: 219 ITQKLFYADNNEHKVKLLNHVLNESSLDQAIIFTSTKKGADKLAECL-----SENGFAVA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H ++Q R + + + K+ R+ LV TD A+RGID G+ H V FD P +Y
Sbjct: 274 ALHGDMNQRQRTRTISQL---QKKQIRV-LVATDIAARGIDINGISHAVNFDLPMQAEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRT R AG G A V ++ +RI
Sbjct: 330 VHRIGRTGR-AGRNGSALSLVTNEEKHKIRRI 360
>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 426
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 187/383 (48%), Gaps = 27/383 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +I ++ + +P+ IQ + P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 2 SFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ L+ S S + SP R +IL PT ELA+QV S+ R K + SMV+ GG
Sbjct: 62 LLSQDSLK--SASNASSPIRALILTPTRELAAQVESSVRDYGKY-LKLNSMVMFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + L+ VD+L+ATPGR + +++G + L + +LDE D + D F ++ ++S
Sbjct: 119 PQKQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRML-DMGFIRDIRRILS 177
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L AT F D + G+ +E + + D + K
Sbjct: 178 LLPKQRQNLLFFAT------------FSDKIKELAAGLLNRPQMIEVARRNVTADTVTQK 225
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K+ L LI K + +VF T + ++K+ + R++ L H
Sbjct: 226 VYKIERDRKRDLLAHLIRKDNWYQVLVFTR---TKYGADRLVKQLGHE--RIQALAIHGN 280
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F + LV TD A+RG+D + + +VV FD P P +YV R+G
Sbjct: 281 KSQSARTHALAKFKNGSLQ----VLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIG 336
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G+A V + L
Sbjct: 337 RTGR-AGASGEAVSLVSADEYHL 358
>gi|409405536|ref|ZP_11253998.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386434085|gb|EIJ46910.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 513
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 119/377 (31%), Positives = 183/377 (48%), Gaps = 30/377 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ Q + P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ R +ILAPT ELA+QV + R K +P S + GG
Sbjct: 62 RLSAMPRQKINGHL--PIRALILAPTRELAAQVEESVRQYGKY-LPLTSACIFGGVGIHP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + +++G + L +++ +LDE D + D F ++ ++++
Sbjct: 119 QIALLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRML-DMGFIRDIRKVLAA 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI KL + + +P L E S + +
Sbjct: 178 LPPKRQNLLFSATFADEI-KKLADSLLN------------NPALIEVARRNSTVEVIAQK 224
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+KK +L LI+ + +VF K+ L R + + H
Sbjct: 225 IHPVDRDKKHPMLAHLIKTHQWKQVLVFTRTKHGANKLVEQLAR-----DGITAMAIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + EF K+ +L L+ TD A+RGID + HVV +D P P +YV R+
Sbjct: 280 KSQSARTKALAEF-----KDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRI 334
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG TG+A V
Sbjct: 335 GRTGR-AGATGEAVSLV 350
>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
Length = 397
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQKWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/417 (29%), Positives = 201/417 (48%), Gaps = 38/417 (9%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D + F LG + E+L + P+ +Q A PP++EGK + +G+GKT A+
Sbjct: 9 DGATVSGFGALGVHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAF 68
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF--RSMVV 380
LP++ R+ ++ + P V+IL PT ELA QV ++ + G P +++ V
Sbjct: 69 SLPLLTRIAEK-----GRRAGNGPGVLILVPTRELAMQV---AEAVHRYGKPLGLQALAV 120
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG + Q+ L+ GVDV+IATPGR + IK G L L +LDE D + D F
Sbjct: 121 YGGASMELQVRALRRGVDVVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEML-DMGFAE 179
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L++++ ++P Q +ATLP I + H P + +
Sbjct: 180 ELEAILDATPENKQTALFSATLPPRIGGIAQK-------------HLRQPVHVKVEREVV 226
Query: 501 GDQESDKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
+ ES + + A++ +K AL ++++ + IVFC T +V+ + + +
Sbjct: 227 AEGESARVRQVAYVVSRAHKMPALARVLDIEQPTSAIVFCR---TRTEVDELSETLTARG 283
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
R L H L Q+ R M++F R+++ L L+ TD A+RG+D V HVV FD P
Sbjct: 284 LRAEAL--HGGLSQDQRDRVMQKF---RARKVDL-LIATDVAARGLDVKHVSHVVNFDVP 337
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
D YV R+GRT R AG G A F ++ L + I + + + VP+ +L
Sbjct: 338 VDAETYVHRIGRTGR-AGREGVAVTFAEPRENRLLRNIERQTGQKIEIAQVPTVADL 393
>gi|434406298|ref|YP_007149183.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
gi|428260553|gb|AFZ26503.1| DNA/RNA helicase, superfamily II [Cylindrospermum stagnale PCC
7417]
Length = 470
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 184/378 (48%), Gaps = 30/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ ++ + + P+ IQ A P V+ G+ + Q+G+GKT + LP++
Sbjct: 2 SFSTLGLSNEIVRAVTERGYTEPTPIQMQAIPAVLSGRDLLAGAQTGTGKTAGFTLPLLH 61
Query: 329 RL-RQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL + + G+S SG P R +IL PT ELA+QV + R K + SMV+ GG
Sbjct: 62 RLSSNKSVNGIS---SGFPPIRALILTPTRELAAQVEESVREYGKY-LNLNSMVMFGGVN 117
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+Q L+ VD+L+ATPGR + +++G + L + +LDE D + D F ++ +
Sbjct: 118 INSQKRRLKGRVDILVATPGRLLDHVQQGTVNLSRVEVLVLDEADRML-DMGFIHDIRRI 176
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+S P Q L AT F D + G+ +E + + D +
Sbjct: 177 LSLLPKQRQNLLFFAT------------FSDKIKALAAGLLNRPAMIEVARRNVTADTVA 224
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K + K+ L LI++ + +VF T + ++K+ E R++ L H
Sbjct: 225 QKVYQVDRDRKRHLLTHLIQQHRWFQVLVFTR---TKHGADRLVKQLG--EDRIQALAIH 279
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F + + LV TD A+RG+D + + HVV FD P P +YV R
Sbjct: 280 GNKSQSARTYALAKFKNNSLQ----VLVATDIAARGLDISELPHVVNFDLPNVPEDYVHR 335
Query: 626 VGRTARGAGGTGKAFIFV 643
+GRT R AG G+A V
Sbjct: 336 IGRTGR-AGAEGEAVSLV 352
>gi|417777782|ref|ZP_12425596.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
gi|410782079|gb|EKR66644.1| DEAD/DEAH box helicase [Leptospira weilii str. 2006001853]
Length = 513
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ +LDE D + D F ++ ++ +
Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLDDIKIVVLDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 176 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 232 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|395237134|ref|ZP_10415233.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|423351003|ref|ZP_17328655.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
gi|394487633|emb|CCI83321.1| ATP-dependent RNA helicase DeaD [Turicella otitidis ATCC 51513]
gi|404387055|gb|EJZ82184.1| hypothetical protein HMPREF9719_00950 [Turicella otitidis ATCC
51513]
Length = 704
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 200/409 (48%), Gaps = 42/409 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG S+ M+ ++K+ F +PS IQA P ++ G+ + Q+G+GKT A+ LPV+ +
Sbjct: 101 FESLGISEEMLAAVKKAGFTKPSPIQAETIPLLMAGRDVVGLAQTGTGKTAAFALPVLSK 160
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +L+ + +P+ ++LAPT ELA+QV + + + + V GG Q
Sbjct: 161 V---DLK------ARTPQALVLAPTRELAAQVADSFQEFAGDLKGLEVLPVYGGQSYGFQ 211
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L+ G +++ TPGR + +K G L + L+ +LDE D + N F+ ++ ++ +
Sbjct: 212 LSGLRRGAQIIVGTPGRIIDHLKRGSLDISELKYLVLDEADEMLN-MGFQEDVERILEDT 270
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q +AT+P I K+ + + + P E V ++ T
Sbjct: 271 PEAKQVALFSATMPAGI-RKISQQY-----LTNPA---------EVTVKTREKTNTNITQ 315
Query: 510 ETAFL---NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
F+ +K AL++++E + V IVF +V + L R F A
Sbjct: 316 RWIFVPHRDKLQALVRILEVTDVDGMIVFVRTKSETEEVADAL----------RAAGFSA 365
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
A +E T + K RL LV TD A+RG+D + HVV FD PR+ YV R
Sbjct: 366 AAINGDIAQAQRERTVEQLKSGRLDILVATDVAARGLDVERISHVVNFDIPREAESYVHR 425
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD-VPSAFEL 673
+GRT R AG +G+A +FV K+ + R +ER K D +P+ E+
Sbjct: 426 IGRTGR-AGRSGEAILFVTPKEKRML-RTIERATKATLTEDELPTVDEV 472
>gi|423015941|ref|ZP_17006662.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
gi|338781000|gb|EGP45396.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
Length = 457
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 183/376 (48%), Gaps = 41/376 (10%)
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++ RL L S
Sbjct: 1 MQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM--PLANTS 58
Query: 340 KSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S + P R +IL PT ELA QV + + SK P RS VV GG Q E L+ G +
Sbjct: 59 ASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIGPQKEALRRGCE 117
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
VL+ATPGR + +++ + L + +LDE D + D F L+ +I P Q L
Sbjct: 118 VLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIRLLPAQRQGLLF 176
Query: 459 TATLPVEI-------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPET 511
+AT EI N+ VE+ + + +I+ SGDQ
Sbjct: 177 SATFSNEIRKLGRSYLNQPVEIEVAARNATANTITQIA-------YKMSGDQ-------- 221
Query: 512 AFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQE 571
K++A++ L++ + + IVF N + ++ L+R V+ H Q
Sbjct: 222 ----KRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-----DGVKAESIHGDKTQA 272
Query: 572 TRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTAR 631
R+ ++ F + LV TD A+RG+D AGV V+ +D P + +YV R+GRT R
Sbjct: 273 DRMKALEAFKAGELE----VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGR 328
Query: 632 GAGGTGKAFIFVVGKQ 647
AG TG+A G +
Sbjct: 329 -AGATGEAIALFTGDE 343
>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
Length = 469
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 184/377 (48%), Gaps = 33/377 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L S ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I +
Sbjct: 4 FSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIHK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + SK V ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYSK-HVKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +GVDVLIATPGR + + G L L + ++DE D + D F ++ + S +
Sbjct: 117 DVLIDKGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVE---IYNKLVEVFPDCKVV-MGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+ E I N + +V I+ G F D+ES
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVF-TPSRRDRES 234
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ K++ L LI E S I+FCN+ V V L ++ P
Sbjct: 235 SE--------KRAVLRALIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAA-----P 281
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H LDQ R + F R RL L+ +D A+RG+D V HV FD P +YV
Sbjct: 282 IHGDLDQSQRTRTLDGF---RDGSVRL-LIASDVAARGLDIPAVTHVFNFDVPSHAEDYV 337
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +GKA+
Sbjct: 338 HRIGRTGR-AGRSGKAY 353
>gi|404491935|ref|YP_006716041.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544066|gb|ABA87628.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 435
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 194/399 (48%), Gaps = 28/399 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL ++++L + P+ IQA A P + G+ I + +G+GKT A++LP +QR
Sbjct: 3 FSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G+PR+++LAPT ELA QV+ R K + + V+ GG + Q
Sbjct: 63 LTVKIAR-----RKGAPRMLVLAPTRELAGQVMDAARVYGKY-LGLTTAVLLGGVPYRDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + +D+++ATPGR + ++ + L L +LDE D + D F+ + + +++
Sbjct: 117 FRALAKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRML-DMGFKEDVDKVCAAA 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + TATL + + D + + +S +E+ L Q
Sbjct: 176 PRQRQTMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQ------ 229
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K L L++ S +S+ IVF T R +++ + D R H ++
Sbjct: 230 -----HKNRLLQHLLKHSDISQAIVFS---ATKRDADSLAR--DLSAQGYRAAALHGDMN 279
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R +++ R + LV TD A+RG+D AG+ HV +D P+ +YV R+GRT
Sbjct: 280 QGARNRTVRDLRRGRIR----VLVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRT 335
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVP 668
R AG TG A FV G +VS +RI + P ++P
Sbjct: 336 GR-AGATGVAISFVSGAEVSALRRIQHFIGRELPRREIP 373
>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
gi|108879362|gb|EAT43587.1| AAEL004978-PA [Aedes aegypti]
Length = 638
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 188/380 (49%), Gaps = 34/380 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + G DY+++++++ ++ +P+ IQ A P +++ + + Q+GSGKT A+LLP+I
Sbjct: 215 KSFGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMI 274
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L L + G+P VVI+APT ELA Q+ + R + G + V GG +
Sbjct: 275 NTL----LNDNADMVPGNPFVVIIAPTRELALQIFNEARKFA-LGTVLKVCVAYGGTATR 329
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++N+Q G +L+ATPGR + + + + ++ +LDE D + D F +++ +++
Sbjct: 330 HQMDNIQNGCHILVATPGRLLDFVDKQAVTFERVKFVVLDEADRML-DMGFMPSVEKMMN 388
Query: 448 SSPV----TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ Q L +AT P EI +L F + + + G+ + S D
Sbjct: 389 HETMRPKEERQTLMFSATFPAEI-QELAGQFLNNYIFVAVGI----------VGGASTDV 437
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E + + K+ L +L+E + T+VF + ++L ET+
Sbjct: 438 EQ-TIHQVSKFQKRKKLEELLEADDPTGTLVFVETKRNADYLASLL-----SETKFPTTS 491
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLF-LVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R +++F K ++F L+ T A+RG+D V HVV +D P+ +Y
Sbjct: 492 IHGDRLQREREEALRDF-----KSGKMFILIATSVAARGLDIKNVAHVVNYDLPKSIDDY 546
Query: 623 VRRVGRTARGAGGTGKAFIF 642
V R+GRT R G GKA F
Sbjct: 547 VHRIGRTGR-VGNKGKATSF 565
>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
gi|89517223|gb|EAS19880.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
Length = 425
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/410 (29%), Positives = 202/410 (49%), Gaps = 37/410 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG + ++ +L+ Q + P+ IQA + P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPILQ 61
Query: 329 RLRQEELQGLSKSTSG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L S G S + +++ PT ELA Q+ N ++ +K R+ V+ GG +Q
Sbjct: 62 HLYN------SAPPKGRRSIKALVVTPTRELAIQIDENFKAYAKY-TDIRNTVIYGGVKQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ G+DVL+ATPGR + LI +G + L ++ +LDE D + D F ++ L+
Sbjct: 115 AQQVNRLKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQML-DMGFIHDIKKLL 173
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+P I ++ D + V I+P + ++
Sbjct: 174 KLLPHERQSLFFSATMPKTIVELSRQILGDFERVT------IAPE------KTTAEKVEQ 221
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ NK L++L+E + T+VF T I+K D ++ + H
Sbjct: 222 QIYHVNKKNKTKLLIELLETKLLDSTLVFSR---TKHGANKIVK--DLEKAGIGSAAIHG 276
Query: 567 ALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + F KE ++ LV TD A+RGID + +VV +D P YV R
Sbjct: 277 NKSQAARQRALGAF-----KEGKIQTLVATDIAARGIDIDELSYVVNYDLPNVAESYVHR 331
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL---HDVPSAFE 672
+GRT R AG +G A F + ++ + I + ++ P+ HD P E
Sbjct: 332 IGRTGR-AGASGLAVSFCMLEERPFLKDIEKLIKQQIPVIEDHDFPFKME 380
>gi|422922704|ref|ZP_16955883.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
gi|341645192|gb|EGS69342.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
Length = 398
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAVQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|397639861|gb|EJK73804.1| hypothetical protein THAOC_04552 [Thalassiosira oceanica]
Length = 626
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 201/422 (47%), Gaps = 73/422 (17%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
+FF+ SF L SD +L F + ++IQ+++ P ++ GK I A ++GSGKTLA+
Sbjct: 95 EFFAADSFTSLPLSDNTQSALATMGFTQMTKIQSLSIPALLSGKDLIGAAKTGSGKTLAF 154
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVT 381
LLPV++ L + S++ +G+ ++++PT ELA Q+ C+ L G ++ ++
Sbjct: 155 LLPVVELLHNAKFG--SRNGTGA---IVISPTRELAMQIYGVCKDLCTNGKHHQTYGLIM 209
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDI---LFN--- 434
GG ++T+ E L +GV+++IATPGR + L NL ++DE D+ LF
Sbjct: 210 GGANRRTEAERLAKGVNIIIATPGRLLDHLQNTKGFVFRNLLAFVMDEADVRIVLFGVKY 269
Query: 435 ----------------------DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN---- 468
++ FE L+++I P Q + +AT +I +
Sbjct: 270 SWCYDDSHRLTTATIVPPKRILEQGFEDDLRAIIKILPKQRQTMLFSATQTKKIEDLART 329
Query: 469 ------KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
VEV D + + GLE+ V DQ FL L
Sbjct: 330 AIDKSAVYVEVPSDTSLA-------TAEGLEQGYVTVPSDQR--------FL----LLFT 370
Query: 523 LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTT 582
++K+ K +VF + + + +L D + + H Q+ R +F
Sbjct: 371 FLKKNKNKKIMVFFSSCNSVKFHAELLNYID-----IPCMDIHGRQKQQKRTTTFFQF-- 423
Query: 583 SRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIF 642
K+++ L+CTD A+RG+D VD ++ FD P DP EY+ RVGRTARG GTG+A +F
Sbjct: 424 --CKQSKGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGDEGTGRALLF 481
Query: 643 VV 644
+
Sbjct: 482 LT 483
>gi|384135153|ref|YP_005517867.1| DEAD/DEAH box helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339289238|gb|AEJ43348.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 526
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/403 (30%), Positives = 198/403 (49%), Gaps = 38/403 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ G + +++++ F PS IQA P V+EG+ I Q+G+GKT A+ +P+++
Sbjct: 3 SFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLVE 62
Query: 329 RLRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
R+ S PRV ++L PT ELA QV R ++K RS+ + GG
Sbjct: 63 RV------------STEPRVQAIVLTPTRELAIQVAGEIRKIAKYK-RVRSVPIYGGQSI 109
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L++GV ++I TPGR + I G L L ++R +LDE D + D F +++++
Sbjct: 110 VHQIRALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEML-DMGFIDDIEAIL 168
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+P Q + +AT P E+ + D + + P + DQ
Sbjct: 169 RETPSERQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQI---------DQVCY 219
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K E NK +L ++++ + I+FC T R V+++++ + L H
Sbjct: 220 KVLER---NKLDSLCRIVDSEDIQLGIIFCR---TKRGVDDLVEALLARGYLADGL--HG 271
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
L Q R M++F R E L LV TD A+RG+D V HV+ +D P+DP YV R+
Sbjct: 272 DLSQAQRDRVMRKF---RKNEIEL-LVATDVAARGLDVDDVTHVINYDVPQDPESYVHRI 327
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPS 669
GRT R AG G A V ++ L ++I ++ + +VPS
Sbjct: 328 GRTGR-AGKRGLAITLVTPREYKLLKQIEREIKQKITVREVPS 369
>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
gi|74659776|sp|Q6C4D4.1|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica CLIB122]
Length = 552
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 185/378 (48%), Gaps = 32/378 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G Y+++ +K+Q F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIV 176
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + + S P V++LAPT ELA Q+ C K R+ V GG +
Sbjct: 177 HINAQPML----SHGDGPIVLVLAPTRELAVQIQQECSKFGKSS-KIRNTCVYGGVPRGQ 231
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GV+++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 232 QIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRML-DMGFEPQIRKIVDQ 290
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD- 506
Q L +AT P E+ + D +V +G S + + + C+ ++ D
Sbjct: 291 IRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDR 350
Query: 507 --KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K ET NK+ SK ++F ++V + + +F R++ L
Sbjct: 351 LVKHLETVMENKE------------SKCLIFTG----TKRVADDITKFLRQDG-WPALAI 393
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q+ R + EF +S +V TD ASRGID G++ V+ +D+P + +YV
Sbjct: 394 HGDKQQQERDWVLNEFRQGKSP----IMVATDVASRGIDVKGINFVINYDYPSNSEDYVH 449
Query: 625 RVGRTARGAGGTGKAFIF 642
R+GRT R AG G A+ +
Sbjct: 450 RIGRTGR-AGTKGTAYTY 466
>gi|456888324|gb|EMF99307.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200701203]
Length = 527
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LELE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ +LDE D + D F ++ ++ +
Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 176 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 232 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|395787552|ref|ZP_10467151.1| hypothetical protein ME7_00486 [Bartonella birtlesii LL-WM9]
gi|395411067|gb|EJF77602.1| hypothetical protein ME7_00486 [Bartonella birtlesii LL-WM9]
Length = 467
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 193/393 (49%), Gaps = 36/393 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S +I+++K + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 7 SFDDLGLSAKVIKAVKSAGYTAPTPIQSGTIPHVLQKKDVLGIAQTGTGKTASFVLPMLT 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 67 LLET------GRARARMPRTLILEPTRELAAQVEEN---FDKYGINHRLNVALLIGGVSF 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L+ + ++DE D + D F ++ +
Sbjct: 118 EQQDRKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRML-DMGFIPDIERIC 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
+P T Q LF +AT+ EI +KL + F V V + + ++LV SG++
Sbjct: 177 KLTPFTRQTLFFSATMAPEI-SKLTKQFLHSPVSVEVTKASSTATTITQWLVK-SGNKSW 234
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L +LI E I+FCN+ R + + + R V L
Sbjct: 235 D---------KRAVLRELIHNEGDEFKNAIIFCNR---KRDISELFRSLVRHNFSVGAL- 281
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +DQ +R + +F ++ K LV +D A+RG+D V HV +D P +Y+
Sbjct: 282 -HGDMDQYSRTNTLTDFKNNKLK----LLVASDVAARGLDIPAVSHVFNYDVPTHAEDYI 336
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R A +GKAF V I E
Sbjct: 337 HRIGRTGR-ANRSGKAFTIVTKADQKYVHAIEE 368
>gi|372270358|ref|ZP_09506406.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 576
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 195/406 (48%), Gaps = 34/406 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +L + PS IQA + PP++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 10 NFGDLGLSTPILNALADVGYETPSPIQARSIPPLLEGQDLLGMAQTGTGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ +T+ P++++LAPT ELA QV + C SK R++ + GG +
Sbjct: 70 RI---------DTTATHPQLLVLAPTRELALQVATACEKYSKHLPGLRTLSIYGGQGYDS 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G V+I TPGR M I+ G LQL L+ +LDE D + F ++ ++
Sbjct: 121 QIRGLRRGAQVIIGTPGRVMDHIRRGTLQLDRLQSLVLDEADEMLR-MGFIDDVEWILQH 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q +AT+P I + + V+ + + + G
Sbjct: 180 TPAQRQIALFSATMPQAIRHIAENYLQEPAVIKIKAQTATASTIRQRTWTVRG------- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
++K AL +++E +VF T E++ + ++ L H +
Sbjct: 233 -----MSKTQALTRILELHEHEAALVFVR---TKTATESLAEELNQAGFPAAAL--HGDI 282
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R E S+ K+ L ++ TD +RG+D + HV+ +D P D Y+ R+G
Sbjct: 283 AQAQR-----ERIVSKLKKGELDVVIATDVVARGLDVERISHVINYDIPYDTESYIHRIG 337
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
RT R AG G A +FV ++ L ++I R+ ++P+A ++
Sbjct: 338 RTGR-AGREGDAILFVTNREQRLLKQIERATRQPLDKLELPTAKQI 382
>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
Length = 397
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 188/376 (50%), Gaps = 29/376 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E L+ G +VL+ATPGR + +++ + L + +LDE D + D F L+ +I
Sbjct: 135 PQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIR 193
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI KL + + V + + + Q + K
Sbjct: 194 LLPAQRQGLLFSATFSNEI-RKLGRSYLNHPVEIEVAARNATAN--------TITQIAYK 244
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCN-KIVTCRKVENILKRFDRKETRVRVLPFHA 566
P A K++A++ L++ +++ IVF N KI T R ++ + + E+ H
Sbjct: 245 MPSDA---KRAAVVHLVKSRGLNQVIVFSNTKIGTARLARDLERDGVKAES------IHG 295
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R+ ++ F + LV TD A+RG+D AGV V+ +D P + +YV R+
Sbjct: 296 DKTQADRMKALEAFKAGELE----VLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRI 351
Query: 627 GRTARGAGGTGKAFIF 642
GRT R AG +G+A
Sbjct: 352 GRTGR-AGASGEAIAL 366
>gi|15896005|ref|NP_349354.1| DEAD/DEAH box helicase [Clostridium acetobutylicum ATCC 824]
gi|337737958|ref|YP_004637405.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
gi|384459469|ref|YP_005671889.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336292304|gb|AEI33438.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
Length = 481
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 192/396 (48%), Gaps = 39/396 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S SF++LG S+ +++S+++ + +PS IQ P ++ GK I ++GSGKT A+ +
Sbjct: 1 MSELSFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAI 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
PV +++ EE + P+V++LAPT ELA Q+ + ++ + R + + G
Sbjct: 61 PVCEKIELEERE---------PQVLVLAPTRELAYQIKEDFLNIGRFK-RLRCISIFGKE 110
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ L++ V +++ TPGR + I+ G L L ++ I+DE D + N F ++S
Sbjct: 111 PISNQIRELKQRVHIVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLN-MGFIEQVES 169
Query: 445 LISSSPVTAQYLFVTATLPVEIY---NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
++ P +ATLP EI K ++ F + +V + G+ + +
Sbjct: 170 ILIKMPKNKNTFLFSATLPEEIVMLSKKYMKNFENIEV---QNEGKTKGGIHQVYYEVES 226
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
++ D L ++I K +I+FC T VE++L + K +
Sbjct: 227 REKFD------------LLKKVIYKEVPGSSIIFCR---TKNNVEDVLVKM--KNMKFSC 269
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
+ H + QE R+A M F FL+ TD A+RGID V HV+ +D P +
Sbjct: 270 MAIHGGMLQENRIAVMNAFKRGEF----TFLIATDVAARGIDVENVTHVINYDIPMEKES 325
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
Y+ R+GRT R G G A FV K+ + I E+
Sbjct: 326 YIHRIGRTGR-MGNKGIAITFVTSKEERFLKEIEEQ 360
>gi|353242513|emb|CCA74151.1| probable RNA helicase dbp2 (DEAD box protein) [Piriformospora
indica DSM 11827]
Length = 550
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 203/411 (49%), Gaps = 39/411 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E+G +Y++ ++++Q F P+ IQ A+P + G+ + Q+GSGKT+++ LP +
Sbjct: 125 FDEVGFPNYLMSTIEQQGFAEPTPIQCQAWPMALSGRDVVAISQTGSGKTISFALPAMLH 184
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + L + P V+ILAPT ELA Q+ + C R+ + GG + Q
Sbjct: 185 INAQPLL----APGDGPIVLILAPTRELAVQIQTECTKFG-ANSRIRNTAIYGGAPKGPQ 239
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +LQ GV+++IATPGR + ++++ L + ++DE D + D FE ++ ++
Sbjct: 240 IRDLQRGVEIVIATPGRLIDMLEQNKTNLRRVTYLVMDEADRML-DMGFEPQIRKIVGQI 298
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P ++ + D +V +G ++ + +Q +T
Sbjct: 299 RPDRQTLMFSATWPKDVQKLASDFLKDFIQVNIGS-------------MELTANQNITQT 345
Query: 509 PETAF-LNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
E K++ LL+ +E + K ++F V ++V + + ++ R++ L H
Sbjct: 346 VEVVTDFEKRNKLLKHLELISNENGKVLIF----VATKRVADDITKYLRQDG-WPALAIH 400
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+Q R + EF + RS L+ TD ASRG+D V +V+ +DFP + +Y+ R
Sbjct: 401 GDKEQRERDWVLAEFKSGRSP----ILIATDVASRGLDVKDVSYVINYDFPNNCEDYIHR 456
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIME--RNRKGHPLHDVPSAFELM 674
+GRT R AG TG AF + + A ++ R+ K H VP E M
Sbjct: 457 IGRTGR-AGKTGTAFTYFTAENSKAAGELVAILRDAKQH----VPPQLEEM 502
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 196/409 (47%), Gaps = 36/409 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ Q + P+ IQA A P V+EG+ + Q+G+GKT + LP++Q
Sbjct: 2 SFENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L + +TS SP R +IL PT ELA+QV + ++ K +P +S VV GG
Sbjct: 62 LL------SIHANTSTSPAKHPVRALILTPTRELAAQVEESVQTYGKY-LPLKSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
K Q+ L+ GV++L+ATPGR + +++ + L + +LDE D + D F ++
Sbjct: 115 VNIKEQIAALKGGVEILVATPGRLLDHVEQKTVNLSKVEILVLDEADRML-DMGFLPDIK 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+I+ P Q L +AT EI ++ D ++ + S + + + D
Sbjct: 174 RIIALLPAKRQNLLFSATFAGEIKKLSDQLLTDPVLIEVARRNAASENVTQVIYPV--DH 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E K+ L LI+ + + +VF ++ L++ T +
Sbjct: 232 E----------RKRELLAHLIKSENLQQVLVFSRTKHGASRLAQQLEKDGISATAI---- 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q+ R + EF + LV TD A+RG+D + HVV FD P P +YV
Sbjct: 278 -HGDKSQQQRTQALAEFKDGTVR----VLVATDVAARGLDIDQLPHVVNFDLPNAPEDYV 332
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
R+GRT R AG +G+A V ++ + I ++ P VP FE
Sbjct: 333 HRIGRTGR-AGSSGEAISLVCADELRMLAEIESMLKRELPRITVP-GFE 379
>gi|418054301|ref|ZP_12692357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
gi|353211926|gb|EHB77326.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
Length = 590
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 183/375 (48%), Gaps = 32/375 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ G ++ + +L + ++ P+ IQ A PP +EG+ + ++GSGKT ++LP++
Sbjct: 16 QTFEAFGFAEPLSRALTQCGYVAPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPIL 75
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q++ + ++ K ++LAPT ELA Q+ SL++ + R VV GG +
Sbjct: 76 QKIASQSIESAPKQVL----ALVLAPTRELAIQIDQEVASLAR-NMRIRRAVVLGGVSKG 130
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GV VL+ATPGR + L+ L + +LDE D +F D F ++ +++
Sbjct: 131 PQINALKRGVHVLVATPGRLLDLVNMRTCDLSRVDTLVLDEADRMF-DMGFIRDIKKIVA 189
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD- 506
P + +AT+P EI EV D +R+ + +VD DQ+
Sbjct: 190 LLPAVRRTALFSATMPAEIKKFAYEVLKDP--------YRVDLSPKSVVVDRI-DQKVMI 240
Query: 507 -KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
+TPE K+S L ++ + IVF T R + + R + FH
Sbjct: 241 VRTPE-----KQSRLHTILSDEACKRVIVFTR---TKRGADRVADRLGMAS--ISASAFH 290
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F + LV TD A+RGID + + HVV FD P DP YV R
Sbjct: 291 GNKAQNARQRALNDFMMGHIR----VLVATDIAARGIDVSNITHVVNFDMPLDPETYVHR 346
Query: 626 VGRTARGAGGTGKAF 640
VGRTAR G +G A
Sbjct: 347 VGRTAR-KGNSGIAI 360
>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 501
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 187/396 (47%), Gaps = 47/396 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFADLGLSDKVLQAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 MLET------GRARARMPRTLILEPTRELAAQVEEN---FERYGTNHKLNVALIIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L G DVLIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 113 ADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTGVELLVIDEADRML-DMGFIPDIERIV 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L ++F P V P + +E+ LV +
Sbjct: 172 KMVPFTRQTLFFSATMPPEI-ERLADMFLHNPQRVEVARPSS--TATTIEQRLVATGAEG 228
Query: 504 ESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K+ L LI + + I+FCN RK + L + V
Sbjct: 229 H----------EKRKILRHLIRSADELQNGIIFCN-----RKRDVALLQKSLASHGFNVA 273
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ R A + F RS E L LV +D A+RG+D V HV FD P P +Y
Sbjct: 274 ALHGDMDQRARTAALDGF---RSGEVPL-LVASDVAARGLDIPAVSHVFNFDVPHHPEDY 329
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERN 658
V R+GRT R AG G AF +LA R ER+
Sbjct: 330 VHRIGRTGR-AGRAGHAF--------TLASRADERS 356
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 196/408 (48%), Gaps = 35/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+++ATPGR + +++ + L NL +LDE D + D F ++ ++
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML-DMGFIHDIKRVL 175
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL-VDCSGDQES 505
+ P Q L +AT EI L + D SP L E + + + +
Sbjct: 176 AKLPPQRQNLLFSATFSDEI-KSLADSLLD------------SPALIEVARRNTTAESVA 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
K K+ L LI + + +VF K R E + K + +
Sbjct: 223 QKIHPVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTK------DGISAMAI 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF +S + LV TD A+RGID + HVV FD P P +YV
Sbjct: 277 HGNKSQSARTRALAEFKSSTLQ----VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 332
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
R+GRT R AG TG+A V + L R +ER K +V + FE
Sbjct: 333 RIGRTGR-AGATGEAVSLVCVDEKQLL-RDIERLIKREIPQEVIAGFE 378
>gi|404451050|ref|ZP_11016024.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403763343|gb|EJZ24311.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 377
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 197/385 (51%), Gaps = 48/385 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++++++ N+ +P IQ A P +++ + + Q+GSGKT AY+LP++
Sbjct: 2 NFSDLGLSPDILQAIQKANYEKPYPIQVEAIPAILQKRDLLGLAQTGSGKTAAYILPIL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQ 386
EELQ S S S V+I+ PT ELA+QV R K +P +S V GG
Sbjct: 61 ----EELQKSSIHKSRSVPVLIIVPTRELAAQVEEVIRMFGKF-LPRKVKSNAVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L G D+L+ATPGR + LI + + +L+ +LDE D + N F+ L ++
Sbjct: 116 NPQMIKLN-GTDILVATPGRLLDLIARNAISISDLKTLVLDEADKVLN-LGFKAELDEIL 173
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q L +AT+ + +L++ +++ P + P EE
Sbjct: 174 SRLPKKRQNLLFSATMEDSV-GQLID-----RLLQNPVKIEVKP--EEI----------- 214
Query: 507 KTPE----TAFL---NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETR 558
TPE TA+L KK LL LI++ + +VF + I R +N+ + ++
Sbjct: 215 -TPELINQTAYLVAQEKKGPLLRHLIQEGDWKQVLVFASSI---RTADNLTAKLNK--NG 268
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
++ + FH Q R +K+F + LV TD A+RGID + HVV F+ PR
Sbjct: 269 IQAMAFHGDKSQGARTEALKQFKGGTLR----VLVATDLAARGIDIQFLPHVVNFELPRS 324
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFV 643
P +Y+ R+GRT R AG +G+A +
Sbjct: 325 PKDYIHRIGRTGR-AGASGEAISLI 348
>gi|422439272|ref|ZP_16516095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422470759|ref|ZP_16547259.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
Length = 536
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/383 (30%), Positives = 186/383 (48%), Gaps = 37/383 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P IQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 34 SFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 93
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV N + + R + V GG +
Sbjct: 94 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQNISTAASV-RGARVLTVYGGVGYE 152
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ LQ GVDV++ TPGR + L + L L ++ +LDE D + D F +++LI
Sbjct: 153 PQIDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEML-DLGFLPDVENLIG 211
Query: 448 SSPVTAQYLFVTATLPVEIY-------NKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+P Q + +AT+P I N+ V V + G P ++F+
Sbjct: 212 RTPTPRQTMLFSATMPAPIMALARSQLNRPVHVRAE-----GADTQATVPDTQQFVY--- 263
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
+ L+K + ++++ + K I+FC C+++ + D + +
Sbjct: 264 ---------QAHPLDKIEIIGRILQANDAEKVIIFCRTKRACQRLSD-----DLNDRGFK 309
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H L Q R +K F R + + LV TD A+RGID GV HV+ + P D
Sbjct: 310 ARAIHGDLTQVAREKALKRF---RHGDVTI-LVATDVAARGIDVTGVSHVINHECPEDEK 365
Query: 621 EYVRRVGRTARGAGGTGKAFIFV 643
YV R+GRT R AG G A V
Sbjct: 366 TYVHRIGRTGR-AGTKGVAVTLV 387
>gi|334340505|ref|YP_004545485.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334091859|gb|AEG60199.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 532
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 196/383 (51%), Gaps = 39/383 (10%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +L +++ L F P+ IQ +A P V+ G I Q+G+GKT A+ +P+I
Sbjct: 8 RAFGDLQLDPRVVDGLIDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLI 67
Query: 328 QRL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
QRL R++ +Q V+IL PT ELA QV + + R + + GG
Sbjct: 68 QRLDFRKKGVQ-----------VIILTPTRELAIQVGEEITKIGRYR-RIRVLPIYGGQS 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q+++L++GV V++ TPGR + ++ L+L + A+LDE D + D F ++ +
Sbjct: 116 IDRQIKSLRQGVQVVVGTPGRLLDHLRRQTLKLDQITMAVLDEADEML-DMGFIEDIEEI 174
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q L +AT+P EI + + K+V + P +E+ +
Sbjct: 175 LRHTPPVRQTLLFSATMPDEITRLARQYLTEPKLVTVSKTNLTVPQIEQVYYEA------ 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD-RKETRVRVLPF 564
PE +K AL +L++ + +++ IVFC T R V++++ R T V
Sbjct: 229 ---PEK---HKLEALCRLLDITDIAQGIVFCR---TKRGVDDLVSGLQARGYTAV---SL 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H L Q+ R M++F RS E L LV TD A+RG+D GV HV+ +D P+DP YV
Sbjct: 277 HGDLSQQQRNTVMRQF---RSGEVEL-LVATDVAARGLDIEGVSHVINYDIPQDPEFYVH 332
Query: 625 RVGRTARGAGGTGKAFIFVVGKQ 647
R+GRT R AG +G A + ++
Sbjct: 333 RIGRTGR-AGRSGVAITIITPRE 354
>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 485
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 30/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D ++++L + + P+ IQ A P ++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +E SKST G R+ +IL PT ELA Q+ + + + + R+ V+ GG Q
Sbjct: 63 LSEER----SKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRH-LNIRNTVIFGGVSQH 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q+ L+ GVDVLIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 118 SQVNTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRML-DMGFIHDVKKVIT 176
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P ++ KL + ++ P ++P V + D
Sbjct: 177 KLPTHRQSLFFSATMPPDVA-KLADT-----ILNNPAKVEVTP------VSSTADTIEQA 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+K+ L+ +++ + +VF T + ++K D + + H
Sbjct: 225 MYFVGKEDKRKLLVHILDDKNIKSALVFAR---TKHGADKVVK--DLLKAGIGAEAIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F +S+E R+ LV TD A+RGID + HV+ ++ P P YV R+G
Sbjct: 280 KSQNARQRALSNF---KSRETRV-LVATDIAARGIDVDELSHVINYELPNIPETYVHRIG 335
Query: 628 RTARGAGGTGKAFIF 642
RT R AG G A F
Sbjct: 336 RTGR-AGHDGIALSF 349
>gi|398798035|ref|ZP_10557337.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
gi|398101283|gb|EJL91506.1| DNA/RNA helicase, superfamily II [Pantoea sp. GM01]
Length = 629
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 196/403 (48%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGINVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P E ++ + F + P RI L + + ++
Sbjct: 177 IPDGHQTALFSATMP-EAIRRITKRF-----MKDPQEVRIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYN---------SAAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV FD P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNFDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|310816695|ref|YP_003964659.1| ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25]
gi|385234299|ref|YP_005795641.1| ATP-dependent RNA helicase [Ketogulonicigenium vulgare WSH-001]
gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
vulgare Y25]
gi|343463210|gb|AEM41645.1| ATP-dependent RNA helicase, putative [Ketogulonicigenium vulgare
WSH-001]
Length = 517
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 31/380 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQA A P + G+ + Q+G+GKT ++ LP+IQ
Sbjct: 4 FSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPMIQL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N +K +++++ GG K Q
Sbjct: 64 LSR------GRARARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLI-GGVSFKDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + +
Sbjct: 117 DTLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFQMT 175
Query: 450 PVTAQYLFVTATLPVEI---YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q LF +AT+ EI N + +V ++ + + +V G +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSAPARIEVARAATTNQ---NITQAVVQFKGSSKER 232
Query: 507 KTPETAFLNKKSALLQLIE--KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ E K++ L LIE + ++ I+FCN+ + V LK++ P
Sbjct: 233 EPSE-----KRAVLRALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYG-----YNAEPI 282
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H LDQ R+ + F K FLV +D A+RG+D V HV FD P +YV
Sbjct: 283 HGDLDQSQRMRTLDGFRDGSVK----FLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVH 338
Query: 625 RVGRTARGAGGTGKAFIFVV 644
R+GRT R AG TG F+ V
Sbjct: 339 RIGRTGR-AGRTGSTFMICV 357
>gi|395779999|ref|ZP_10460466.1| hypothetical protein MCW_00553 [Bartonella washoensis 085-0475]
gi|395419266|gb|EJF85566.1| hypothetical protein MCW_00553 [Bartonella washoensis 085-0475]
Length = 467
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 195/382 (51%), Gaps = 38/382 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF +LG S+ +I+++K + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 6 KSFDDLGLSEKVIKAVKSAGYTVPTPIQSGTIPHVLQRKDVLGIAQTGTGKTASFVLPML 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFR 385
L + ++ + PR +IL PT ELA+QV N K G+ R + + GG
Sbjct: 66 TLLEK------GRARARMPRTLILEPTRELAAQVEEN---FDKYGINHRVNIALLIGGVS 116
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q L+ G DVLIATPGR + + G L L+ + ++DE D + D F ++ +
Sbjct: 117 FEHQERKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRML-DMGFIPDIERI 175
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQE 504
+P T Q LF +AT+ EI KL + F V V + + + LV SG++
Sbjct: 176 CKLTPFTRQTLFFSATMAPEI-TKLTKQFLHFPVSVEVTKASSTATTITQRLVK-SGNKA 233
Query: 505 SDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
D K++ L +LI E + I+FCN+ R + + + R V L
Sbjct: 234 WD---------KRAVLRELIHNEGEELKNAIIFCNR---KRDISELFRSLVRHNFSVGAL 281
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
H +DQ +R+ + +F K+ +L LV +D A+RG+D V HV +D P +
Sbjct: 282 --HGDMDQYSRMNTLADF-----KDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAED 334
Query: 622 YVRRVGRTARGAGGTGKAFIFV 643
Y+ R+GRT R A +GKAF V
Sbjct: 335 YIHRIGRTGR-ANRSGKAFTIV 355
>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 520
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 185/377 (49%), Gaps = 30/377 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ Q + P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ R +ILAPT ELA+QV + R K +P S + GG
Sbjct: 62 RLSAMPRQKINGHV--PIRALILAPTRELAAQVEESVRQYGKY-LPLTSACIFGGVGINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + +++G + L +++ +LDE D + D F ++ ++++
Sbjct: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRML-DMGFIRDIRKVLAA 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI KL + + +P L E S + +
Sbjct: 178 LPPKRQNLLFSATFADEI-KKLADSLLN------------NPALIEVARRNSTVEVIAQK 224
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+KK +L LI+ + +VF T ++++ R + + H
Sbjct: 225 IHPVDRDKKHPMLAHLIKTHQWKQVLVFTR---TKHGANKLVEQLGRDG--ITAMAIHGN 279
Query: 568 LDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + EF K+ +L L+ TD A+RGID + HVV +D P P +YV R+
Sbjct: 280 KSQSARTKALAEF-----KDGKLTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRI 334
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG TG+A V
Sbjct: 335 GRTGR-AGATGEAVSLV 350
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 191/403 (47%), Gaps = 29/403 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P V+ G+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKH-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E L+ G ++L+ATPGR + +++ + L + +LDE D + D F L ++
Sbjct: 135 PQKEALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADRML-DMGFLPDLDRIVR 193
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI KL + + V +E + + D S
Sbjct: 194 LLPAQRQGLLFSATFSNEI-RKLGRTYLNQPV-----------EIEVAARNATADTVSQI 241
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ K++A++ L++ + + IVF N + ++ L+R VR H
Sbjct: 242 AYQMPSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-----DGVRAESIHGD 296
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R+ + F + LV TD A+RG+D AGV V+ +D P + +YV R+G
Sbjct: 297 KSQADRMKALDAFKAGELE----VLVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIG 352
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP--LHDVP 668
RT R AG +G+A + Q I + ++ P DVP
Sbjct: 353 RTGR-AGASGEAIALFTADETRYLQDIEKLTKRPVPRGTLDVP 394
>gi|429887177|ref|ZP_19368702.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
gi|429225829|gb|EKY32027.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
Length = 398
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAVQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|429329903|gb|AFZ81662.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 501
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 203/402 (50%), Gaps = 46/402 (11%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
++F+ F++L S+ ++++L Q F++ ++IQA PP+++GK + ++GSGKTLA+
Sbjct: 32 EYFTNVFFRDLELSEPILKALNEQEFVKTTEIQAKCIPPLLKGKDVLGKAKTGSGKTLAF 91
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L+P+ + L Q ++ + ++ +G +I++PT EL+ Q+ + + K +P +V G
Sbjct: 92 LIPLAEILFQ--VKFMPRNGTGG---IIISPTRELSLQIYEVAKDICKY-LPQTLGLVMG 145
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFM--------FLIKEGILQLINLRCAILDEVDILFN 434
G +K + E L GV++LIATPGR + F+ K NL I+DE D +
Sbjct: 146 GANRKQEAEKLVRGVNILIATPGRLLDHMQNTKGFVFK-------NLLLFIIDEADRIL- 197
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GL 492
+ FE L +I P Q +AT + + L + + + + ++ GL
Sbjct: 198 EIGFEEELNQIIKLLPEKRQTCLFSATHGSNVED-LARLSLKSPIFLEASISDVATVVGL 256
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRF 552
E+ V C PE FL L ++K+ K +VF + + + + +L
Sbjct: 257 EQGYVVCE--------PENRFL----LLFTFLKKNMDKKVMVFFSSCNSVKFHDELLNYI 304
Query: 553 DRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVL 612
D + H Q R+A F + S L+CTD A+RG+D VD +V
Sbjct: 305 D-----IPAKSIHGKKKQSARMATYYSFCKATSGH----LLCTDVAARGLDIPKVDWIVQ 355
Query: 613 FDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+D P DP +Y+ RVGRTARG G GKA +F++ ++V Q +
Sbjct: 356 YDPPDDPRDYIHRVGRTARGVDGKGKAIMFLMPEEVGFLQYL 397
>gi|418720312|ref|ZP_13279510.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. UI 09149]
gi|418738362|ref|ZP_13294757.1| DEAD/DEAH box helicase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410743290|gb|EKQ92033.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. UI 09149]
gi|410745855|gb|EKQ98763.1| DEAD/DEAH box helicase [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 513
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ +LDE D + D F ++ ++ +
Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 176 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 232 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 196/408 (48%), Gaps = 35/408 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +++++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL E +G ++ R +IL PT ELA+QV + R+ SK V RS V+ GG
Sbjct: 62 RLHTYYAEHRGAKRAV----RALILTPTRELAAQVEESVRAYSKY-VKLRSTVMFGGVSI 116
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+++ATPGR + +++ + L NL +LDE D + D F ++ ++
Sbjct: 117 NPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML-DMGFIHDIKRVL 175
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL-VDCSGDQES 505
+ P Q L +AT EI L + D SP L E + + + +
Sbjct: 176 AKLPPQRQNLLFSATFSDEI-KSLADSLLD------------SPALIEVARRNTTAESVA 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPF 564
K K+ L LI + + +VF K R E + K + +
Sbjct: 223 QKIHPVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLTK------DGISAMAI 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + EF +S + LV TD A+RGID + HVV FD P P +YV
Sbjct: 277 HGNKSQSARTRALAEFKSSTLQ----VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVH 332
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
R+GRT R AG TG+A V + L R +ER K +V + FE
Sbjct: 333 RIGRTGR-AGATGEAVSLVCVDEKQLL-RDIERLIKREIPQEVIAGFE 378
>gi|421095225|ref|ZP_15555938.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
gi|410361935|gb|EKP12975.1| DEAD/DEAH box helicase [Leptospira borgpetersenii str. 200801926]
Length = 513
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/386 (31%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 6 FSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIEL 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG + Q
Sbjct: 66 LELE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L++ ++IATPGR M ++ G ++L +++ +LDE D + D F ++ ++ +
Sbjct: 117 LKALRKNPQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEML-DMGFREDMEFILKDT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P+ Q + +AT+ +I L++ F ++ ++S P +E+ + QE+ K
Sbjct: 176 PIDRQTIMFSATMTDDILT-LMKRFQKHPQIIDVTHQKLSAPKIEQIYYEI---QENAKG 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 232 ---------EALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 278 NQKQRDKVMNGFRNGNIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG G AF F+VGKQ+ ++I
Sbjct: 334 TGR-AGKKGIAFSFIVGKQIYNLKKI 358
>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
mellifera]
Length = 588
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 192/393 (48%), Gaps = 32/393 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-V 326
+ F+E Y++E + +Q + +P+ IQA +P + G+ + Q+GSGKTL Y+LP +
Sbjct: 113 QYFEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGSGKTLGYVLPAI 172
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV--LSNCRSLSKCGVPFRSMVVTGGF 384
+ + Q L S P +ILAPT ELA Q+ ++NC GV R+ + GG
Sbjct: 173 VHIIHQPRL-----SNGDGPIALILAPTRELAQQIQEVANCFG-EAAGV--RNTCIFGGA 224
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++
Sbjct: 225 PKGPQAHDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRK 283
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
+I Q L +AT P E+ L E F + + G +S +VD +
Sbjct: 284 IIEQIRPDRQVLMWSATWPKEV-RALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEF 342
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
E D K LLQ I +KTI+F + T RKV++I + R + L
Sbjct: 343 EKDL--------KLYRLLQEIGNEKENKTIIF---VETKRKVDDITRNIRRDGW--QALS 389
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +Q+ R ++EF + R+ LV TD A+RG+D V +V+ FD+P +Y+
Sbjct: 390 IHGDKNQQERDHVLQEFKSGRAP----ILVATDVAARGLDVDDVKYVINFDYPSSSEDYI 445
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R TG A+ F + A ++E
Sbjct: 446 HRIGRTGR-RRQTGTAYAFFTSHNMKHAGDLIE 477
>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 524
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 194/406 (47%), Gaps = 34/406 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ES++R F +PS IQA P ++G + Q+GSGKT A+ LP
Sbjct: 5 TFADLGLRPELLESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPA-- 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L GL S + +V++L PT ELA QV LS +++ V GG
Sbjct: 63 ------LHGLDLSNKAT-QVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDR 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GV V++ TPGR M +K L+ ++R ILDE D + D F ++ ++ +
Sbjct: 116 QIRALKKGVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRML-DMGFREDMEIILDA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+ + + D K + +E+
Sbjct: 175 IPQERQTLFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYY----------- 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD-RKETRVRVLPFHAA 567
E +K + +L++ P + IVFCN T + VE++ + + R T R+ H
Sbjct: 224 -EVRNRSKVEVMCRLLDMEPTQRGIVFCN---TKQMVEDVCEALNARGYTADRI---HGD 276
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F + A LV TD A+RG+D ++ V +D P DP +YV R+G
Sbjct: 277 ISQGIREKVIRRFRDN----AIEILVATDVAARGLDIDDIELVFNYDLPYDPEDYVHRIG 332
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
RT R AG +GK+ FV G+ + + I R+ +PS E+
Sbjct: 333 RTGR-AGRSGKSITFVYGRDIRRLEAIERYIRQSIRRTRIPSQEEV 377
>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
Length = 397
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 185/377 (49%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D+E+
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITV--DKET--- 229
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 230 --------KSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|440804129|gb|ELR25007.1| DEAD/DEAH box helicase domain containing protein, partial
[Acanthamoeba castellanii str. Neff]
Length = 597
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 201/443 (45%), Gaps = 55/443 (12%)
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
DCP +DGD + + S Y +P+ +Q A P V +G+ +
Sbjct: 133 DCPTPLDSKFSDGDLLDPIVMRNIELSGYD----------KPTPVQKYAIPIVGQGRDLM 182
Query: 310 LADQSGSGKTLAYLLPVIQRLRQE--------------ELQGLSKSTSGSPRVVILAPTA 355
Q+GSGKT A+LLP+I L + G S+ P ++LAPT
Sbjct: 183 ACAQTGSGKTAAFLLPIISALHKNPPASGYGRGGFGGDRGGGYSRRPMAQPHALVLAPTR 242
Query: 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI 415
ELASQ+ S G P R+ VV GG QL ++ GV++L+ATPGR + L++
Sbjct: 243 ELASQIYKEACKFSYYG-PLRAAVVYGGADIYQQLREIERGVEILVATPGRLVDLMERAR 301
Query: 416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSS--PVTA--QYLFVTATLPVEIYNKLV 471
+ L N+R ILDE D + D FE ++ ++ P T Q L +AT PVEI +L
Sbjct: 302 VSLANIRYLILDEADRML-DMGFEPQIRRIVEQEDMPRTEDRQTLLFSATFPVEI-QRLA 359
Query: 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSK 531
F + + + G V + D S K +K +A+L+L+ +
Sbjct: 360 SDFLNDWIFLRVGR-----------VGSTTDFISQKLMYVEDRDKTNAVLELLAEV-RGL 407
Query: 532 TIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLF 591
T++F ++EN L R V H Q R A + F + R+
Sbjct: 408 TLIFVQTKRGADQLENFLYR-----EGFPVASIHGDRTQREREAALTSFRSGRTP----I 458
Query: 592 LVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLA 651
LV TD A+RG+D V HV+ +D P + +YV R+GRT R AG TG FV + ++
Sbjct: 459 LVATDVAARGLDIPNVLHVINYDLPTNIDDYVHRIGRTGR-AGNTGLTTAFVSERDANIL 517
Query: 652 QRIMERNRKGHPLHDVPSAFELM 674
+++ R+ +VP F+ +
Sbjct: 518 PDLLDILREAE--QEVPEWFDQL 538
>gi|414343639|ref|YP_006985160.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028973|gb|AFW02228.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 417
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 126/388 (32%), Positives = 198/388 (51%), Gaps = 44/388 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 46 FAAFGLISPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E S G PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 106 LSKGE------SVHG-PRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 157
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ +GVD+++AT GR + L+ +G L L L +LDE D L DEDF ++ +L
Sbjct: 158 VRSIVDGVDIVVATHGRLLDLVMQGELVLEYLTYLVLDEADRLL-DEDFSESMTALTPYF 216
Query: 450 P-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF----LVDCSGDQE 504
P V Q +F +ATLP + + V D R+ E F + + E
Sbjct: 217 PDVPPQTVFCSATLPEPVMDLAKRVTRDPV--------RVEVAAETFTPKKIRQRAMFVE 268
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFD-RKETRVRVLP 563
+ PET + +++++ P +++VF + IL++ + R ET
Sbjct: 269 KEDKPET--------VARILQRFP-GRSMVFTRTKANVDLLARILRKHNIRSET------ 313
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F R LV TD ASRG+D + VD V+ D P P YV
Sbjct: 314 LHGDRTQGARNKALDLFRQGRVP----VLVTTDIASRGLDISDVDLVINMDMPETPEAYV 369
Query: 624 RRVGRTARGAGGTGKAFIFV-VGKQVSL 650
R+GRTAR AG G AF + + +++SL
Sbjct: 370 HRIGRTAR-AGKKGAAFSLINIDERLSL 396
>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
Length = 480
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 189/384 (49%), Gaps = 43/384 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ ++ + P+ IQA A P V+E + + Q+G+GKT ++ LP++
Sbjct: 2 SFNTLGLSEKVLAAVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N + G + V + GG
Sbjct: 62 LLEK------GRARARMPRTLILEPTRELAAQVQEN---FERYGTNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 AEQDKKLDRGTDVLIATPGRLLDHFERGKLLLQGVEILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-----LVDCSG 501
P T Q LF +AT+P EI +L E F + P ++P + +G
Sbjct: 172 KLIPFTRQTLFFSATMPPEI-QRLTETF-----LQNPARIEVAPTSSTAENVTQQLKAAG 225
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
++ DK + AL +L+E + + IVFCN+ R + + + +R E V
Sbjct: 226 GKDYDK---------RVALRELLEGAEDLQNAIVFCNR---KRDISTLFRSLERHEYNVG 273
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
L H +DQ TR+ ++ F K A LV +D A+RG+D V HV +D P +
Sbjct: 274 AL--HGDMDQRTRMMMLENF----RKGAIKLLVASDVAARGLDIPEVSHVFNYDVPINAE 327
Query: 621 EYVRRVGRTARGAGGTGKAFIFVV 644
+YV R+GRT R AG +G A+ V
Sbjct: 328 DYVHRIGRTGR-AGRSGTAYTLVT 350
>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 402
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/394 (29%), Positives = 198/394 (50%), Gaps = 29/394 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P +++G + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + + KS R+++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDQFKKRAMPKSC----RILVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + LI +G ++L ++ +LDE D + D F ++ +++
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRML-DMGFIQPIRKIVAMV 178
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P I V V+ P ++P V + D+ K
Sbjct: 179 PKQRQTVLFSATMPDSI------VGLANSVLHTPVRVEVTP------VSSTVDKIDQKVL 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
+K++ L ++ + V + +VF +V +L++ + H
Sbjct: 227 FVDREHKRTLLTDILGGADVVRALVFTRTKHGANRVVELLEK-----AGIDADAIHGNKS 281
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + +F + K LV TD A+RGID G+ HV+ F+ P +P YV R+GRT
Sbjct: 282 QGARQKALSDFRDGKIKA----LVATDIAARGIDVDGITHVINFELPNEPESYVHRIGRT 337
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHP 663
AR AG +G A G + SL +R+ G P
Sbjct: 338 AR-AGASGIALSLCDGDE-SLICATSKRHPSGIP 369
>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
Length = 636
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 192/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 10 TFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLH 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 70 NI---------DPTVKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDV 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 121 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI L + + ++
Sbjct: 180 IPDGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSL-------TTRPDISQS 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL + +E I+F +V L+R AAL
Sbjct: 227 YWTAYGRKTDALTRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNS---------AAL 277
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 278 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 336
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 337 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 378
>gi|443478559|ref|ZP_21068298.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
gi|443016135|gb|ELS30863.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
Length = 513
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 187/380 (49%), Gaps = 34/380 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ + L+ F P+ IQ A P ++ G + Q+G+GKT A+ LP+++
Sbjct: 4 SFLSLGISEARVAKLESIGFTEPTAIQEQAIPQLLAGADVLGQAQTGTGKTAAFALPILE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RL S S + +IL PT ELA QV RS +K G + + V GG
Sbjct: 64 RL---------DLNSDSLQALILTPTRELAIQVGQALRSFNTKPGA--KILTVYGGSAID 112
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GV V++ TPGR + L++ G L+L NL +LDE D + N F ++ ++
Sbjct: 113 RQMIQLERGVHVVVGTPGRVIDLMERGKLKLENLAWFVLDEADEMLN-MGFIQDVERILV 171
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P T Q F +AT+P + +LV+ F V + +P DQ+
Sbjct: 172 TTPSTKQSTFFSATMPPAV-KRLVKNFLKSPVTVKVETQDSTP--------TRIDQQIYL 222
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
P L K+ ALL ++E + I+F + ++ IL+ V +H
Sbjct: 223 VP--YHLTKEEALLPVLEYEAPTSAIIFVRTKDSASRLTEILQSSGHS-----VDEYHGN 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q R ++ F R+++ R ++V TD A+RG+D G+ HV D P DP YV R+G
Sbjct: 276 LSQSQRENLLRRF---RNQQVR-WVVATDIAARGLDIDGLTHVFNLDIPDDPERYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVVGKQ 647
RT R AG G A + GK+
Sbjct: 332 RTGR-AGKKGVAITLISGKE 350
>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
Length = 645
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 192/380 (50%), Gaps = 30/380 (7%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
+IES+KR F +P+ IQ+ A+P +++G I Q+G+GKTL+YL+P L Q +
Sbjct: 252 LIESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLNN---QPI 308
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
S+ P +++L PT ELA QV + C S G+ +S+ + GG ++ Q+ ++ +G+D
Sbjct: 309 SREERNGPGMLVLTPTRELALQVEAECSKYSYKGL--KSICIFGGRNREQQIRDITKGID 366
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR +L + L ++ +LDE D + D FE + ++ Q + +
Sbjct: 367 IIIATPGRLNYLQMNNFVNLQSITYLVLDEADKML-DLGFEHQIMKILLDVRPDRQTVMI 425
Query: 459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518
+AT I+ +L + + +++ G L+ V+ T E +K
Sbjct: 426 SATWSDTIH-QLGQSYLKEPMIVYVGT------LDLVAVNTVTQNVIITTQE-----EKR 473
Query: 519 ALLQ--LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
+LLQ L +SP K IVF + + + + D + V H DQ R
Sbjct: 474 SLLQEFLQNRSPQDKVIVFVRRRLVADDLSS-----DLSIQGITVQSLHGDRDQHDRERA 528
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
+++F + + K L+ TD ASRG+D + HV +DFPR+ EYV RVGRT R AG T
Sbjct: 529 LEDFRSGKVK----VLIATDLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGR-AGKT 583
Query: 637 GKAFIFVVGKQVSLAQRIME 656
G + + +A +++
Sbjct: 584 GLSITLMTQNDWKIATELIK 603
>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 435
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 189/382 (49%), Gaps = 36/382 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F+ FK+L ++++L+ + P+ IQ A P + + K + Q+G+GKT A+ +
Sbjct: 15 FNNLQFKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAI 74
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L + K+ R ++L PT ELA Q+ N + SK +P R++V+ GG
Sbjct: 75 PILQMLTYSK----EKTAQKRIRTLVLTPTRELAIQIKENFDAYSK-ELPIRNLVIYGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ Q + L++G+D+LIATPGR + L +G + L L +LDE D + D F ++
Sbjct: 130 GQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRML-DMGFIHDVKK 188
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+IS P Q L +AT+P EI KL ++ P ++P
Sbjct: 189 VISIIPKKRQTLLFSATMPAEI-QKLA-----SHILEEPSKVEVTP----------ESTT 232
Query: 505 SDKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVR 560
++K ++ + +K+ L L++ + T+VF T + I K D + ++
Sbjct: 233 AEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVFSR---TKHGADRIAK--DLAKQGIQ 287
Query: 561 VLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPS 620
H Q R + F + ++ R+ LV TD A+RGID + +V+ FD P P
Sbjct: 288 AAAIHGNKSQSARQNALSNF---KDRKLRV-LVATDIAARGIDIDDLSYVINFDLPNIPE 343
Query: 621 EYVRRVGRTARGAGGTGKAFIF 642
YV R+GRT R AG GKA F
Sbjct: 344 SYVHRIGRTGR-AGKDGKAISF 364
>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
Length = 397
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIYAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|347758155|ref|YP_004865717.1| DEAD/DEAH box helicase [Micavibrio aeruginosavorus ARL-13]
gi|347590673|gb|AEP09715.1| DEAD/DEAH box helicase family protein [Micavibrio aeruginosavorus
ARL-13]
Length = 489
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 194/403 (48%), Gaps = 38/403 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S ++++++ + P+ IQ A P V+ + + Q+G+GKT ++ LP+I
Sbjct: 3 TFEDLGLSPEVLKAVEECGYTTPTPIQEQAIPVVLMMRDIVGLAQTGTGKTASFTLPMI- 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L G ++ + PR ++L PT ELA+QV N + K ++++V GG
Sbjct: 62 ----EILSG-GRAKARMPRSLVLVPTRELAAQVAENFDTYGKYNALTKALLV-GGESMGD 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ ++S
Sbjct: 116 QIKLLDRGVDVLIATPGRLLDLFERGNILLNDIKVLVIDEADRML-DMGFIPDIEKIVSK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P EI +L + F P V P + + + LV Q
Sbjct: 175 IPPMRQTLLFSATMPPEI-KRLADKFLSNPKTIAVAAPA--STNANVRQALVWVKERQ-- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
K L LI++ V +FCN+ + L+ + P H
Sbjct: 230 ----------KMELLDALIQQEDVKNAFIFCNRKKDIAGLAKFLQNHNYAAA-----PLH 274
Query: 566 AALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
+ Q R + +F KE + LVC+D A+RG+D V HV FD P +YV
Sbjct: 275 GDMVQSARTKTLLDF-----KEGLVSLLVCSDVAARGLDVDAVSHVFNFDVPMHADDYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDV 667
R+GRT R AG TG+A+ I +R +K P+ V
Sbjct: 330 RIGRTGR-AGMTGRAWTMATPDDTKYVAAIEQRIQKPIPVETV 371
>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
Length = 398
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWVQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|410943326|ref|ZP_11375067.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 386
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 124/388 (31%), Positives = 198/388 (51%), Gaps = 44/388 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 15 FAAFGLIPPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E ++ PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 75 LSKGE-------SAHGPRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ +GVD+++AT GR + L+ +G L L L +LDE D L DEDF ++ +L
Sbjct: 127 VRSIVDGVDIVVATHGRLLDLVMQGDLVLEYLSYLVLDEADRLL-DEDFSESMTALTPYF 185
Query: 450 P-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF----LVDCSGDQE 504
P V Q +F +ATLP + + V D R+ E F + + E
Sbjct: 186 PDVPPQTVFCSATLPEPVMDLAKRVTRDPV--------RVEVAAETFTPKKIRQRAMFVE 237
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRK-ETRVRVLP 563
+ PET + +++E+ P +++VF + +L++ + K ET
Sbjct: 238 KEDKPET--------VARILERFP-GRSMVFTRTKANVDLLARVLRKHNIKSET------ 282
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + F R LV TD ASRG+D + VD V+ D P P YV
Sbjct: 283 LHGDRTQGARNKALDLFRQGRVP----VLVTTDIASRGLDISDVDLVINMDMPETPEAYV 338
Query: 624 RRVGRTARGAGGTGKAFIFV-VGKQVSL 650
R+GRTAR AG G AF + + +++SL
Sbjct: 339 HRIGRTAR-AGKKGAAFSLINIDERLSL 365
>gi|407716753|ref|YP_006838033.1| ATP-dependent RNA helicase DeaD-like protein [Cycloclasticus sp.
P1]
gi|407257089|gb|AFT67530.1| ATP-dependent RNA helicase DeaD-like protein [Cycloclasticus sp.
P1]
Length = 594
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 188/393 (47%), Gaps = 36/393 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L S ++++LKR + +PS IQA A P +++G I Q+G+GKT A+ LP++ +
Sbjct: 9 FADLALSTPVMDALKRIGYEQPSPIQAEAIPHLLDGHDLIGTAQTGTGKTAAFALPLLSK 68
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ T P+V++LAPT ELA QV ++ + F + + GG TQ
Sbjct: 69 I---------DLTVSGPQVLVLAPTRELAIQVAEAFKTYASSMKGFNVLPIYGGQAMDTQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L+ GV V++ TPGR M ++ L+L NL+ +LDE D + F ++ ++ +
Sbjct: 120 LRQLRRGVHVVVGTPGRVMDHLRRKTLKLDNLKTIVLDEGDEMLR-MGFIEDVEWILEQT 178
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q +AT+P I + KVV +E+ SG
Sbjct: 179 PEQRQVALFSATMPAPIRRVADKYLSSPKVVKIISKTSTVERIEQRFWMVSG-------- 230
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
L+K AL +++E I+F K +T E + R + A+
Sbjct: 231 ----LHKLDALTRILEVEDFDGIIMFVRTKALTVELAEKLEAR-----------GYSASA 275
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
++E T + K+ ++ LV TD A+RGID A + HVV +D P D YV R+G
Sbjct: 276 INGDMTQALRERTIGQLKKGQIDILVATDVAARGIDVARISHVVNYDIPYDTEAYVHRIG 335
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRK 660
RT R AG TGKA +FV ++ L + I R+
Sbjct: 336 RTGR-AGRTGKAILFVAPRERRLLRAIENATRQ 367
>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase [Dinoroseobacter shibae DFL 12]
gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
12]
Length = 493
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/381 (31%), Positives = 185/381 (48%), Gaps = 31/381 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR+ ++ + PR ++LAPT ELA+QV N +K +++++ GG K Q
Sbjct: 64 LRK------GRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLI-GGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + +
Sbjct: 117 DLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRML-DMGFIPDIEKIFQLT 175
Query: 450 PVTAQYLFVTATLPVE---IYNKLVEVFPDCKVV-MGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+ E I N + +V I+ GL +F + S
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQF-------KPS 228
Query: 506 DKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ TAF K+ L LIE+ I+FCN+ + V L + P
Sbjct: 229 RRDRATAFKEKREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAA-----P 283
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H L+Q R + +F K FLV +D A+RG+D V HV FD P +YV
Sbjct: 284 IHGDLEQSQRTKTLDQFRDGTLK----FLVASDVAARGLDIPNVSHVFNFDVPSHAEDYV 339
Query: 624 RRVGRTARGAGGTGKAFIFVV 644
R+GRT R AG G + V
Sbjct: 340 HRIGRTGR-AGRKGTTLMLAV 359
>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 506
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 190/405 (46%), Gaps = 34/405 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++ +L+ ++ P+ IQA A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L E + + RV++L+PT ELASQ+ S S G +P+ + VV GG
Sbjct: 64 LSLENRRAPRRGC----RVLVLSPTRELASQI---AESFSDYGRHLPYTNTVVFGGVNIN 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 117 RQERAIAPGVDILVATPGRLIDLVDRRALTLDGVEILVLDEADQML-DLGFIHALKRIVK 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P I + + V + + +++ ++ C
Sbjct: 176 MLPARRQSLFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFC-------- 227
Query: 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K ALL + + P + + +VF T + +++ D+ + H
Sbjct: 228 -----HTGAKQALLNHVLRDPKIERVLVFTR---TKHGADRVVRGLDKAG--IVGAAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F R R+ LV TD A+RGID GV HVV +D P P YV R+
Sbjct: 278 NKSQPQRERALAAF---RDGSCRV-LVATDIAARGIDVEGVTHVVNYDLPNVPESYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
GRTAR AG G A F ++ + I R+ P+ P F
Sbjct: 334 GRTAR-AGAEGMAISFCNDEERAYLLDIERTTRQKVPVAGFPEGF 377
>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274, partial [Cryptosporidium hominis]
Length = 868
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/386 (30%), Positives = 192/386 (49%), Gaps = 32/386 (8%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++ +F+ G S ++ES+K + P+ IQ FP ++ G+ + ++GSGKT ++L
Sbjct: 1 MAKGTFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+I+RL G S S R V+L+PT ELA Q R L+ C +TGG
Sbjct: 61 PMIERL------GCSHSQIVGIRGVVLSPTRELALQTYRVVRKLA-CKTNLVVCALTGGS 113
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q E+L D+++ATPGR I E L LI ++ ILDE D LF + ++
Sbjct: 114 SLDRQFESLSGNPDIVVATPGRLFHHIIEAGLSLIAVKIIILDEADRLF-EMGLASQIEK 172
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ S P Q + V+AT+P + + + + +V+ + +S L+ + D+
Sbjct: 173 ILESIPKNRQCVLVSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDE- 231
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVS--KTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
K ++LL L+ + S + I+FC T V+ I+K + + V
Sbjct: 232 -----------KLASLLYLLRNTIPSHERAIIFC---ATKHHVDYIVKILE--SNNIIVS 275
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
+ +DQE R ++ F ++S+ LV TD A+RG+D + +V+ FDFP P +
Sbjct: 276 YIYGNMDQEARTMHLSTFRKNKSRA----LVVTDIAARGVDIPMIKYVINFDFPLSPKLF 331
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQV 648
V R GRTAR AG G+AF + + +
Sbjct: 332 VHRTGRTAR-AGQHGRAFSLITSRDL 356
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 178/378 (47%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L +D + ++ + + IQA A P V+ GK + A Q+G+GKT A+ LP++Q
Sbjct: 23 AFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQ 82
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + E S S + P R ++L PT ELA QV + +K RS VV GG K
Sbjct: 83 RLMKHE--NASTSPARHPVRALVLLPTRELADQVAQQVKLYAKY-TNLRSAVVFGGMDMK 139
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ GV+VL+ATPGR + I+ L + +LDE D + D F LQ ++S
Sbjct: 140 PQTLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRML-DIGFLPDLQRILS 198
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P T L +AT EI + + + + +E+ + D
Sbjct: 199 YLPKTRTTLLFSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDD----- 253
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+K+ ALLQ++ + + VF N + C ++ L+R +R H
Sbjct: 254 -------DKRHALLQIVRSKDIKQAFVFVNSKLGCARLTRALER-----DGLRAAALHGD 301
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ RL ++ F LVCTD A+RG+D V V D P + +YV R+G
Sbjct: 302 KSQDERLKALEAFKKGEVD----LLVCTDVAARGLDIKDVPAVFNMDIPFNAEDYVHRIG 357
Query: 628 RTARGAGGTGKAFIFVVG 645
RT R AG +G A FV G
Sbjct: 358 RTGR-AGASGLAVSFVGG 374
>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
Length = 397
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVDQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|436834433|ref|YP_007319649.1| DEAD/DEAH box helicase domain protein [Fibrella aestuarina BUZ 2]
gi|384065846|emb|CCG99056.1| DEAD/DEAH box helicase domain protein [Fibrella aestuarina BUZ 2]
Length = 532
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 195/410 (47%), Gaps = 40/410 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ + ++ ++ + P+ IQ A P V+ + Q+G+GKT AY+LP++
Sbjct: 59 SFEDFALNRQLLNAVADAGYTEPTPIQQKAIPVVLGNHDVLGIAQTGTGKTAAYVLPLLM 118
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R++ ++ T+ PR +ILAPT EL Q+ L+ R + + GG KT
Sbjct: 119 RIK------FAQGTA--PRALILAPTRELVMQINEAIGQLA-VHTDIRHVAIYGGLGPKT 169
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E LQ GVD+++ATPGRF L + G + +L+ +LDE D + D F +++++
Sbjct: 170 QIERLQAGVDIIVATPGRFNDLYRLGEIVTKDLKVMVLDEADKMM-DMGFMPQIRAILEV 228
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSGD 502
P Q L +AT P ++ +L F + V + ++P +E+ + D
Sbjct: 229 IPRKRQNLLFSATFPDKV-ERLSSEFLEAPVRI-----EVTPQASTAQMVEQVIYDVPN- 281
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
F K + L LI + + IVF V L R + VRV+
Sbjct: 282 ----------FRTKINLLNYLILQESFQRVIVFTRTKTNAENVYKFLARKVIEAGNVRVI 331
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
HA Q TR+ +M+ F + LV TD A+RGID A V HV+ FD P +Y
Sbjct: 332 --HANKGQNTRINSMEAFKEGNVR----VLVATDVAARGIDVAEVSHVINFDVPLIYEDY 385
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFE 672
V R+GRT R A TG+A FV + +I + R P +P+ E
Sbjct: 386 VHRIGRTGR-ANHTGEAITFVTMAEEYHVAKIEKIIRMTIPRRPIPNEVE 434
>gi|383863318|ref|XP_003707128.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 566
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 190/400 (47%), Gaps = 30/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHTS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK S LL+ I +KTIVF I T R+V+ I ++ R + H
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVF---IETKRRVDEITRKMKRDGWPAVCI--HGD 387
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R +++F + ++ LV TD A+RG+D V V+ FD+P +YV R+G
Sbjct: 388 KTQQERDWVLQDFRSGKAP----ILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIG 443
Query: 628 RTARGAGGTGKAFIFVV----GKQVSLAQRIMERNRKGHP 663
RT R TG A+ F K L Q + E N+ +P
Sbjct: 444 RTGRRQ-KTGTAYTFFTPNNSNKANDLIQVLKEANQVINP 482
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 188/375 (50%), Gaps = 30/375 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ + +++R + +P+ +Q A P V+EG+ I A +G+GKT A+LLPV+
Sbjct: 4 FADLGLSEAALAAVERLGYDQPTPVQEQAIPHVLEGRDLIAAASTGTGKTAAFLLPVLSM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + +PRV++++PT ELA Q+ C +S+ F + V GG Q
Sbjct: 64 LPR------ARGRNRAPRVLVVSPTRELAQQIARTCMQISRKTGHF-TTTVFGGTPYGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G DVLIATPGR L+K G++ L +++ +LDE D + D F + +++ ++
Sbjct: 117 IKELRGGTDVLIATPGRLKDLMKRGVVDLSSVQTLVLDEADRML-DMGFLPDVTTIVDAT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+ I L + + +V + + ++++ + + K P
Sbjct: 176 PECRQTLLFSATIDHSIQKNLGSLLTNPAIVEIARNGETAETVAQYVMPIA----NRKKP 231
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
E L ++++ + IVF + + L+R + V H+
Sbjct: 232 EL--------LHAVLDEKGAERVIVFARTKNRTEECADELRR-----SGYSVESIHSDKS 278
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + F ++ LV TD +RGID V+HV+ FD P P +YV R+GRT
Sbjct: 279 QGQRKRALDNFRRGKTS----ILVATDVLARGIDVPDVNHVINFDLPDMPEDYVHRIGRT 334
Query: 630 ARGAGGTGKAFIFVV 644
R AG G A FV
Sbjct: 335 GR-AGEEGFAISFVT 348
>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase [Chlorobium phaeovibrioides DSM 265]
gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
DSM 265]
Length = 412
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 34/375 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L D ++++L+ + + P+ IQA A P V++G + Q+G+GKT A+ +P++QR
Sbjct: 3 FSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L + +QG K R +I+ PT ELA Q+ S S G P + V+ GG Q
Sbjct: 63 LGESRVQGRIKKI----RSLIVTPTRELAIQI---GESFSAYGRHTPLTNTVIFGGVNQN 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L+ +G + L ++ +LDE D + D F ++ +++
Sbjct: 116 PQISRLKNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRML-DMGFIHDIRKVLA 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ P Q LF +AT+P +I V ++ P ++P + DK
Sbjct: 175 ALPKEKQSLFFSATMPPDI------VRLSSTILHNPAKISVTPPSSTVEIINQQIYFVDK 228
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
NK L+ L++ ++ +VF K + V+++LK E H
Sbjct: 229 G------NKSPLLVHLLKNPDITTALVFTRTKHGADKVVKHLLKNGITAEA------IHG 276
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + F + +++ LV TD A+RGID + HV+ +D P YV R+
Sbjct: 277 NKAQNARQRALSNFKSQKTR----VLVATDIAARGIDVDELQHVINYDTSNIPETYVHRI 332
Query: 627 GRTAR-GAGGTGKAF 640
GRT R GA GT +F
Sbjct: 333 GRTGRAGASGTAISF 347
>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
Length = 769
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 191/403 (47%), Gaps = 30/403 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + + ++++L ++ + P+ IQA A P V+EG + Q+G+GKT A+ LP++
Sbjct: 4 FSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLHH 63
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ G G+ R +++APT ELASQ+ +C + R + V GG +
Sbjct: 64 LCKLPDMPG-----PGAVRCLVIAPTRELASQIAEAFSKYGQC-LSLRVLKVFGGVPIRK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G DVL+ATPGR + L+++G + L + +LDE D + D F L+ + ++
Sbjct: 118 QMRDLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQML-DLGFIHPLRRIAAA 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P + + + K V + + S E S ++ K
Sbjct: 177 VPKERQTLFFSATMPSNVSGLANQFLTNPKKVS---IAQESTTAERVTQTMSHVNQAQKG 233
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
P LL ++ + + +VF KV + L +R H
Sbjct: 234 P---------LLLVNLQDESIDRALVFTRTKHGADKVVSKLM-----NAGIRCGAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + F SK LV TD A+RGID GV HV ++ P P +YV R+GR
Sbjct: 280 SQAQRERALNAFRNGDSK----VLVATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAF 671
TAR AG GKA FV + I + R P+ D+P F
Sbjct: 336 TAR-AGREGKAISFVSRDEKKYLLDIQRQIRMKIPIVDLPEGF 377
>gi|374292114|ref|YP_005039149.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
gi|357424053|emb|CBS86918.1| ATP-dependent RNA helicase [Azospirillum lipoferum 4B]
Length = 530
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 194/397 (48%), Gaps = 34/397 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ +++ + + +P+ IQ A P V++ + + Q+G+GKT ++ LP+I
Sbjct: 3 FSELGLGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMI-- 60
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++ ++ + PR +IL PT ELA+QV + + K ++++ GG Q
Sbjct: 61 ----DILASGRARARMPRSLILEPTRELAAQVSESFETYGKHHKLSMALLI-GGETFTEQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ ++S
Sbjct: 116 VKKLDRGVDVLIATPGRLIDLFERGNIMLNDIKVFVIDEADRML-DMGFIPDIERIVSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI +L + F +S +E + + E+
Sbjct: 175 PKNRQTLFFSATMPPEI-RRLADAF-------------LSDPMEISVAPPASPAETVTQA 220
Query: 510 ETAF--LNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
++K+ AL L++ V +FCN+ R + + K +R V L H
Sbjct: 221 MVLVHEMDKRKALRHLLQTEDVKNAFIFCNR---KRDIAVLQKSLERHGFNVGAL--HGD 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ Q R ++ F LVC+D A+RGID G+ HV FD P P +YV R+G
Sbjct: 276 MVQSKRTETLERFKQGEIS----LLVCSDVAARGIDVQGLSHVFNFDVPLTPDDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
RT R AG G+AF+ L I ++ P+
Sbjct: 332 RTGR-AGNKGRAFMLATPDDTKLVGAIARLIKREIPM 367
>gi|388508122|gb|AFK42127.1| unknown [Medicago truncatula]
Length = 499
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 191/390 (48%), Gaps = 30/390 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + DY++E +K+ F+ P+ IQ+ +P ++G+ I ++GSGKTLAYLLP I
Sbjct: 95 KSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 154
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFR 385
+ + + P V++LAPT ELA Q+ +K G R S + GG
Sbjct: 155 VHVNAQPIL----DPGDGPIVLVLAPTRELAVQIQQEA---TKFGASSRIKSTCIYGGVP 207
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ +LQ+GV+++IATPGR + +++ L + +LDE D + D F+ ++ +
Sbjct: 208 KGPQVRDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRML-DMGFDPQIRKI 266
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ Q L+ +AT P E+ +L F + P +++ G E+ + + Q
Sbjct: 267 VPQIRPDRQTLYWSATWPKEV-EQLARQF-----LYNP--YKVIIGSEDLKANHAIKQYV 318
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
D PE +K LL+ I S+ ++F + C ++ L R D L H
Sbjct: 319 DIVPEKQKYDKLVKLLEDIMDG--SRILIFMDTKKGCDQITRQL-RMDGWPA----LSIH 371
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + EF + +S + TD A+RG+D V +V+ +DFP +YV R
Sbjct: 372 GDKSQAERDWVLSEFKSGKSP----IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 427
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRIM 655
+G+T R AG G A+ F A+ ++
Sbjct: 428 IGKTGR-AGAKGTAYTFFTAANARFAKELI 456
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 202/417 (48%), Gaps = 52/417 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILAKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS---GDQESD 506
P Q L +AT EI +++ GL + V+ S + ++
Sbjct: 176 PKNRQNLLFSATFSDEI-------------------RQLAKGLVKDPVEISVAKRNTTAE 216
Query: 507 KTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
++ ++ K L +LI+ + + +VF ++ L +E V
Sbjct: 217 TVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLVFSKTKHGANRLAKTL-----EEKGVSAA 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + F +S + R+ LV TD A+RG+D + V+ D P+ P +Y
Sbjct: 272 AIHGNKSQGARTKALANF---KSGQVRV-LVATDIAARGLDIEQLPQVINVDLPKVPEDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGH------PLHDVPSA 670
V R+GRT R AG TGKA FV K++ +R++++ H P++ VP +
Sbjct: 328 VHRIGRTGR-AGATGKAISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKVPES 383
>gi|189188460|ref|XP_001930569.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972175|gb|EDU39674.1| ATP-dependent RNA helicase DBP8 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 514
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 133/441 (30%), Positives = 206/441 (46%), Gaps = 63/441 (14%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
SI ++ + D P+ S+ + SF L + +++ SL RP+ IQA
Sbjct: 56 SISRVKAKQQDQPQNVTVTSSTPMVNQKLSFTSLNVAPWLVASLASMEIKRPTGIQASCI 115
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359
P +++GK CI ++G+GKT+A+ +P++Q+ E+ G+ VI+ PT ELA
Sbjct: 116 PEILKGKDCIGGSRTGTGKTVAFSVPILQKW-SEDPSGIF--------AVIVTPTRELAI 166
Query: 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK----EGI 415
Q+ +++S + +++TGG Q++Q L V+IATPGR I+ + I
Sbjct: 167 QIYEQVKAIS-APQSMKPILITGGSDQRSQAIALASRPHVVIATPGRLAEHIRTSGEDTI 225
Query: 416 LQLINLRCAILDEVDILFND------EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469
L ++ + DE D L D E L L + Q L TAT+ E
Sbjct: 226 CGLRRVKFVVFDEADRLLAPGKGSMLPDLETCLSVLPPKE--SRQTLLFTATVTPE---- 279
Query: 470 LVEVFPDCKVVMGPGMHRISPG----------LEEFLVDCSGDQESDKTPETAFLNKKSA 519
VM +PG E+ + Q+ +TP T K
Sbjct: 280 ----------VMALKHQPRAPGRLPIFVSEVDTEDLAIPPRLQQKYLQTPVT----HKEC 325
Query: 520 LLQLIEKSPVSKT---IVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLAN 576
L ++ +PV+ T I+FCN+ T +E +L+ D RV H+ L Q R++N
Sbjct: 326 YLHVLLNTPVNSTKSVIIFCNRTKTATLLEYMLRLLDH-----RVTALHSGLKQSDRVSN 380
Query: 577 MKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGT 636
+ F R++ AR+ LV TD A+RG+D V V+ FD PRDP +Y+ RVGRTAR AG
Sbjct: 381 LARF---RAQAARI-LVATDVAARGLDIPEVALVINFDVPRDPDDYIHRVGRTAR-AGRV 435
Query: 637 GKAFIFVVGKQVSLAQRIMER 657
G + F+ + V L I R
Sbjct: 436 GTSITFIGQRDVDLVLAIETR 456
>gi|427431569|ref|ZP_18920912.1| ATP-dependent RNA helicase [Caenispirillum salinarum AK4]
gi|425877717|gb|EKV26448.1| ATP-dependent RNA helicase [Caenispirillum salinarum AK4]
Length = 832
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 191/392 (48%), Gaps = 42/392 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + + +++ + P+ IQ A P V+ + + Q+G+GKT ++ LP+I
Sbjct: 2 TFSDLGLTPETLRAIEDVGYNEPTPIQEQAIPYVLMCRDVLGIAQTGTGKTASFTLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q ++ + PR +ILAPT ELASQV N + K ++++ GG K
Sbjct: 62 ILAQ------GRAKARMPRSLILAPTRELASQVAENFKLYGKYHKLAMALLI-GGESFKE 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L +GVDVLIATPGR M L G + L +++ ++DE D + D F ++ ++S
Sbjct: 115 QEAALDKGVDVLIATPGRLMDLFDRGRILLQDVKILVIDEADRML-DMGFIPDVERIVSF 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSGD 502
P Q LF +AT+ +I KL + F +M P R+SP +++ LV D
Sbjct: 174 LPKIRQTLFFSATMDAQI-RKLADAF-----LMNPKEIRVSPKTSTAATVKQALVIV--D 225
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
Q +K+ AL +L++K V +FCN+ R V + + + +
Sbjct: 226 QH----------DKRRALRELLDKEDVRNAFIFCNR---KRDVGVLFRSLTKH--GYDAV 270
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H + Q R + F +K +VC+D A+RGID + V HV FD P +Y
Sbjct: 271 QLHGDMPQNERTVMLDRFKKGDAK----LMVCSDVAARGIDISDVSHVFNFDVPSHSEDY 326
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRT R AG G A+ + + I
Sbjct: 327 VHRIGRTGR-AGKEGHAYTLATPEDTKYVEGI 357
>gi|398334959|ref|ZP_10519664.1| ATP-dependent RNA helicase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 531
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 195/405 (48%), Gaps = 34/405 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S + ++ F S IQ+ A P +++GK I Q+G+GKT A+ +P I+
Sbjct: 11 FNELNLSTEIQNAIAEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIEL 70
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E S + +IL PT EL QV R L K F + V GG Q
Sbjct: 71 LEVE---------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIDRQ 121
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L++ ++IATPGR M ++ G ++L +++ ILDE D + D F ++ ++ +
Sbjct: 122 LRALRKNPQIVIATPGRMMDHMRRGSIRLEDIKIVILDEADEML-DMGFREDMEFILKDT 180
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P Q + +AT+ +I L++ F ++ ++S P +E+ + QE+
Sbjct: 181 PADRQTIMFSATMTDDILT-LMKRFQKNPQIIDVTHQKLSAPKIEQIYYEI---QEN--- 233
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K AL +LIE V +VFCN T +V+ +++ + L H L
Sbjct: 234 ------AKGEALARLIEYRNVKLALVFCN---TKAQVDTVVELLKSRGYFAEAL--HGDL 282
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q+ R M F + LV TD A RGID V+ V +D PRD +YV R+GR
Sbjct: 283 NQKQRDKVMNGFRNGSIE----ILVATDVAGRGIDVNNVEAVFNYDLPRDGEDYVHRIGR 338
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFEL 673
T R AG G AF F+VGKQ+ ++I N L +P+ +L
Sbjct: 339 TGR-AGKKGIAFSFIVGKQIYNLKKIERINGIKIELGKIPTLDDL 382
>gi|345874413|ref|ZP_08826227.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
gi|417957560|ref|ZP_12600481.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343968096|gb|EGV36329.1| ATP-dependent RNA helicase [Neisseria weaveri ATCC 51223]
gi|343970686|gb|EGV38859.1| ATP-dependent RNA helicase [Neisseria weaveri LMG 5135]
Length = 453
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 190/389 (48%), Gaps = 29/389 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + ++ +L Q + +P+ IQA A P + G + A Q+G+GKT A++LP ++R
Sbjct: 4 FASLGLGNEIVSALSEQGYEQPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLER 63
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L++ S S + P R+++L PT ELA Q+ N RS K +P R V+ GG
Sbjct: 64 LKR--YANASTSPAMHPVRMLVLTPTRELADQIDQNIRSYIK-NLPLRHTVLFGGVNMDN 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L+ G ++++AT GR + IK+ + L + +LDE D + D F ++ ++
Sbjct: 121 QTKELRSGCEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRML-DMGFIDDIRKIMQM 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT I + + V + + +E+ ++
Sbjct: 180 LPKQRQTLLFSATFAPPIRKLAQDFMHSPEQVEVAAQNTTNANVEQHIIAVDT------- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+ K+S L +LI +S+ IVFC T + VE++ + R+ + + H
Sbjct: 233 -----MRKRSLLERLILDLDISQVIVFCK---TKQSVEHVTRDLQRRNISAQAI--HGDK 282
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ RL + F KE +L LV TD A+RG+D A + V+ ++ P P +YV R+G
Sbjct: 283 SQQLRLETLNAF-----KEGKLRVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIG 337
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIME 656
RT R AG G A + + + + I E
Sbjct: 338 RTGR-AGADGIAISLMDETEQKMFESIQE 365
>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 421
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 184/375 (49%), Gaps = 28/375 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG +++++ + + P+ IQA A P V+EG + A Q+G+GKT + LP+++
Sbjct: 7 TFDTLGLDPAILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLE 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q Q ++ R ++L PT ELA+QV + R+ K + RS VV GG +
Sbjct: 67 RLIQNPRQMKARQV----RALVLTPTRELAAQVAESVRTYGK-NLKIRSTVVYGGVGIEP 121
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + G +++IATPGR + L + + L L ILDE D + D F ++ +I+
Sbjct: 122 QKRAIARGCEIVIATPGRLLDLANQRAIDLSALETLILDEADRML-DMGFIHDIKKIIAQ 180
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q L +AT EI + GM + +E + + +Q S K
Sbjct: 181 TPKERQTLLFSATFSPEIKR------------LAAGMLKDPVLIEVARQNTTAEQVSQKV 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K+ L+++I++ + +VF T + K+ D+ +P A
Sbjct: 229 HHVDRHRKQELLIRMIKEKGWKQVLVFTR---TKHGANKLSKQLDQAG-----IPSEAIH 280
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+T+ A MK + + R+ LV TD A+RGID A + HVV F+ P +YV R+GR
Sbjct: 281 GNKTQNARMKALKSFKENRVRV-LVATDIAARGIDIAALPHVVNFELPNVAEDYVHRIGR 339
Query: 629 TARGAGGTGKAFIFV 643
T R AG G+A V
Sbjct: 340 TGR-AGSEGEALSLV 353
>gi|294948517|ref|XP_002785780.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
marinus ATCC 50983]
gi|239899848|gb|EER17576.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
marinus ATCC 50983]
Length = 579
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 190/394 (48%), Gaps = 36/394 (9%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FFS K F +L D + E+L NF + IQA A P +++GK + A ++GSGKTLA+L
Sbjct: 81 FFSDKKFTDLQICDPLKEALTACNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFL 140
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
+P ++ L Q K+ +G V++++PT ELA Q+ C+ + + +V GG
Sbjct: 141 VPALELLVATRFQ--PKNGTG---VMVISPTRELAMQIYDVCKRVVVV-LSQTYGIVMGG 194
Query: 384 FRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
+K + + L G+++++ATPGR + L NL ++DE D + FE +
Sbjct: 195 VNRKNEADKLSRGINIIVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQ-IGFEEDM 253
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVE------VFPDCKVVMGPGMHRISPGLEEFL 496
++ P Q +AT ++ N L +F K + GL +
Sbjct: 254 NQILKILPKKRQTSLFSATQTQKV-NDLARLSLKKPIFVQSKGADDDAAISTASGLVQGY 312
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKE 556
V GD ++ L ++K+ K +VF + + + + +L D
Sbjct: 313 VVVGGD------------DRLRLLFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYID--- 357
Query: 557 TRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFP 616
+ V+ H Q R+ N F S L+CTD A+RG+D VD +V +D P
Sbjct: 358 --IPVISIHGQKKQSARMTNFYRFCQMESG----ILLCTDVAARGLDIPKVDWIVQYDPP 411
Query: 617 RDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSL 650
DP EY+ RVGRTARGA GTGKA +F++ +++
Sbjct: 412 DDPKEYIHRVGRTARGAEGTGKALLFLMPEELGF 445
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/377 (31%), Positives = 186/377 (49%), Gaps = 35/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++ +++ + + PS IQA A P V+EGK + A Q+G+GKT ++LP+++R
Sbjct: 3 FTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S++ R +IL PT ELA+Q+ N S+ + RS VV GG + Q
Sbjct: 63 LSEG-----SRTRPNHIRALILTPTRELAAQIHENAVVYSRH-LRLRSSVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ NL++G D+L+ATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 117 MMNLRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFFRDIKKILDLL 175
Query: 450 PVTAQYLFVTATLPVEIYN---KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI + LV + V R +E+++ +D
Sbjct: 176 PKNRQNLLFSATFSDEIRDLAKGLVNNPVEISVTPANSTART---VEQWIY------PAD 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
K + A L K LI+ + +VF K+ + L + + P H
Sbjct: 227 KKKKPAMLAK------LIKDGDWKQVLVFTRTKHGANKLSHFL-----NDEGITAAPIHG 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + +F +S + R+ LV TD A+RGID + VV F+ P +YV R+
Sbjct: 276 NKSQSARTKALADF---KSGDVRV-LVATDIAARGIDIPQLPQVVNFEIPHVAEDYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R AG GKA V
Sbjct: 332 GRTGR-AGEPGKAVSLV 347
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 185/378 (48%), Gaps = 33/378 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +L + F P+ IQA A P + G+ + Q+G+GKT A+++P+++
Sbjct: 8 SFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLE 67
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R LS + G PR +ILAPT ELA Q+ + +L + F + VV GG +
Sbjct: 68 R--------LSGTPKGQPRALILAPTRELAIQIQATIDTLGRDLQLFATTVV-GGADMQA 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++ D+++ATPGR + + G + L+ + +LDE D + D F + ++ +
Sbjct: 119 QVRGLRQRPDIIVATPGRLLDHMWNGTISLLAMSILVLDEADRML-DMGFAQQINQILDA 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P ++ D VM + G+ + + + D
Sbjct: 178 MPEERQTLLFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHD------ 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K+ LL + +S +VF ++ N+L D RV VL H
Sbjct: 232 -------RKNGLLMSLLQSESDTVLVFARTKHRADRLGNLL---DSAGHRVAVL--HGGR 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
R A ++ F R R+ LV TD A+RGID A + HV+ +D P P +YV R+GR
Sbjct: 280 TLPQRRAALEGF---RRGTYRV-LVATDIAARGIDVANIAHVINYDVPNCPEDYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGK 646
TAR TG+A FV +
Sbjct: 336 TAR-MRTTGRATTFVTSE 352
>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
Length = 446
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 196/399 (49%), Gaps = 32/399 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L D ++++L + + P+ IQ+ A P V++GK + Q+G+GKT A+ +P++Q
Sbjct: 3 FQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPILQL 62
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + KST R +I+ PT ELA Q+ + ++ K S V+ GG Q
Sbjct: 63 L------SVKKSTDRKRPIRSLIVTPTRELAIQIGESLQAYGKY-TGLTSTVIFGGVNQS 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ LQ G+DVL+ATPGR + L+ +G + L ++ +LDE D + D F ++ L+
Sbjct: 116 RQVTALQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRML-DMGFVHDVRRLLL 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ P Q LF +AT+P EI KL + +++ P ++P V + D
Sbjct: 175 ALPAKRQSLFFSATMPPEIV-KLAD-----NILVNPSKVEVTP------VSSTADTIKQF 222
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK + L+++++ + +VF KV +L E +++ H
Sbjct: 223 MYFVDRGNKNNLLVEVLQDPKIKTCLVFTRTKHVADKVVKML-----AEHKIKAEAIHGN 277
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + F ++ LV TD A+RGID ++ V+ ++ P P YV R+G
Sbjct: 278 KSQNARQNALTNFKAQTTR----ILVATDIAARGIDVDNLEFVINYEIPNIPETYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
RT R AG G AF F ++ + + I + K P+ D
Sbjct: 334 RTGR-AGAKGTAFSFCDAEEKAYLKDIEKLISKKIPVID 371
>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
Length = 459
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 184/374 (49%), Gaps = 28/374 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG ++ ++ +L+ + + P+ IQ + P ++EG+ + Q+G+GKT A++LP IQ
Sbjct: 2 SFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + L R+++LAPT ELASQ+ N + +K V GG
Sbjct: 62 RLVEANKRVLPTHC----RMLVLAPTRELASQIADNAKGYAKFS-KLAVATVFGGTSINK 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
++L GVD+L+ATPGR + L+++G L L + +LDE D + D F AL+ ++
Sbjct: 117 NRQDLSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQML-DLGFIHALRRIVKM 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P I + L + F D P ++P V + ++
Sbjct: 176 IPRKRQTLFFSATMPAAIRD-LADKFLD-----NPATVSVTP------VSTTAERVEQSV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K++ L L+ + +VF +V +L + H
Sbjct: 224 TFVTQQEKQALLTILLADPAIELALVFTRTKHGADRVVKLL-----AGNGIAANAIHGNK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R + EF RS + R+ LV TD A+RGID GV HV F+ P +YV R+GR
Sbjct: 279 SQGQRERALGEF---RSGQTRV-LVATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGR 334
Query: 629 TARGAGGTGKAFIF 642
TAR AG +G A F
Sbjct: 335 TAR-AGRSGLAIAF 347
>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
Length = 539
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/378 (30%), Positives = 185/378 (48%), Gaps = 28/378 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E DY+++++ + P+ IQA +P + G + + Q+GSGKTLAY+LP I
Sbjct: 107 QHFEEGNFPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILPAI 166
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + P ++LAPT ELA Q+ R+ V GG ++
Sbjct: 167 VHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVACDFGNASY-VRNTCVFGGAPKR 221
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV+++IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 222 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIE 280
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESD 506
Q L +AT P E+ KL E + + + G ++S +VD + E +
Sbjct: 281 QIRPDRQTLMWSATWPKEV-KKLAEDYLGDYLQINIGSLQLSANHNILQIVDVCQEHEKE 339
Query: 507 KTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
NK + LLQ I +S P +KTI+F + T RKVENI + R +
Sbjct: 340 --------NKLNVLLQEIGQSQEPGAKTIIF---VETKRKVENITRNIRR--FGWPAVCM 386
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q+ R + +F R+ LV TD A+RG+D G+ +V+ FD+P +Y+
Sbjct: 387 HGDKTQQERDDVLYQFKQGRAS----ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 442
Query: 625 RVGRTARG-AGGTGKAFI 641
R+GRT R + GT AF
Sbjct: 443 RIGRTGRSKSKGTSYAFF 460
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 202/417 (48%), Gaps = 52/417 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILAKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS---GDQESD 506
P Q L +AT EI +++ GL + V+ S + ++
Sbjct: 176 PKNRQNLLFSATFSDEI-------------------RQLAKGLVKDPVEISVAKRNTTAE 216
Query: 507 KTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
++ ++ K L +LI+ + + +VF ++ L +E V
Sbjct: 217 TVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLVFSKTKHGANRLAKTL-----EEKGVSAA 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + F +S + R+ LV TD A+RG+D + V+ D P+ P +Y
Sbjct: 272 AIHGNKSQGARTKALANF---KSGQVRV-LVATDIAARGLDIEQLPQVINVDLPKVPEDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGH------PLHDVPSA 670
V R+GRT R AG TGKA FV K++ +R++++ H P++ VP +
Sbjct: 328 VHRIGRTGR-AGATGKAISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKVPES 383
>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
Length = 467
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 195/381 (51%), Gaps = 38/381 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ +I+++K + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 7 SFDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLT 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 67 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FDKYGINHRLNVALLIGGVSF 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L+ + ++DE D + D F ++ +
Sbjct: 118 EHQDRKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRML-DMGFIPDIERIC 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
+P T Q LF +AT+ EI KL + F V V + + + LV SG++
Sbjct: 177 KLTPFTRQTLFFSATMAPEI-TKLTKQFLHFPVTVEVTKASSTATTITQQLVK-SGNKSW 234
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
D K++ L +LI E + I+FCN+ R + + + R V L
Sbjct: 235 D---------KRAVLRELIHNEGDELKNAIIFCNR---KRDISELFRSLVRHNFSVGAL- 281
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H +DQ +R++ + +F K+ +L LV +D A+RG+D V HV +D P +Y
Sbjct: 282 -HGDMDQYSRMSTLADF-----KDNKLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDY 335
Query: 623 VRRVGRTARGAGGTGKAFIFV 643
+ R+GRT R A +GKAF V
Sbjct: 336 IHRIGRTGR-ANRSGKAFTIV 355
>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
Length = 602
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 194/392 (49%), Gaps = 28/392 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF E DY + ++RQ ++ P+ IQA A+P V+ G + + ++GSGKTLA++LP I
Sbjct: 109 RSFDETCFPDYCMNEIRRQRYIEPTPIQAQAWPIVLSGNNLVGIAKTGSGKTLAFILPAI 168
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ Q K G P +++APT ELA Q+ + R+ + GG +
Sbjct: 169 VHING---QPTLKRGDG-PIALVVAPTRELAQQIQTVANDFGSSSY-VRNTCIFGGAPRS 223
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +LQ GV+++IATPGR + ++ G L +LDE D + D FE ++ ++S
Sbjct: 224 KQASDLQNGVEIVIATPGRLLDFLQSGTTNLRRCTYLVLDEADRML-DMGFEPQIRKILS 282
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQES 505
Q L +AT P E+ +L E F + + G +S + +++ C+ ++
Sbjct: 283 QIRPDRQILMWSATWPKEV-RQLAEDFLGNYIQINIGSLELSANHNIRQYVDVCAEHEKG 341
Query: 506 DKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K K L + ++S + K I+F + T +KV+ L RF V V
Sbjct: 342 SKL--------KDLLSHIYDQSGMPGKIIIF---VATKKKVDE-LARFI-NAFGVGVGSI 388
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R + +F + R+ LV TD A+RG+D G+ +V+ FDFP+ +Y+
Sbjct: 389 HGDKSQMDRDNVLNDFRSGRAN----ILVATDVAARGLDVDGIKYVINFDFPQSSEDYIH 444
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R TG ++ F K A+ ++E
Sbjct: 445 RIGRTGR-KHSTGTSYAFFTRKNAKCARALIE 475
>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
Length = 471
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 195/409 (47%), Gaps = 37/409 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQ A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FTDLNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++LAPT ELA+QV N + +K + ++ GG K Q
Sbjct: 64 LSK------GRARARMPRSLVLAPTRELAAQVAENFDTYTKH-LKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI------SPGLEEFLVDCSGDQ 503
P T Q LF +AT+ EI ++ F + GP + S +E+ +V G +
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTF-----LSGPARVEVARQATASETIEQGVVMFKGSR 229
Query: 504 ESDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRV 561
+ E K+ L LI++ I+FCN+ LK++
Sbjct: 230 RDREGSE-----KRQVLRDLIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYG-----FDA 279
Query: 562 LPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSE 621
P H L+Q R ++ F R R FLV +D A+RG+D V HV FD P +
Sbjct: 280 APIHGDLEQSQRTKTLEGF---RDGSLR-FLVASDVAARGLDIPNVSHVFNFDVPSHAED 335
Query: 622 YVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
YV R+GRT R AG +GKA + V + I K P D+P+A
Sbjct: 336 YVHRIGRTGR-AGRSGKAIMICVPRDEKNLADIESLIEKTIPRIDLPNA 383
>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
Length = 537
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 187/378 (49%), Gaps = 27/378 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQA A P + G+ + Q+G+GKT +++LP+I
Sbjct: 4 FSDLALDPRVLQAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPMIT- 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N + +K +++++ GG Q
Sbjct: 63 -----LLGQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLI-GGVSFGEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DKLIDRGVDVLIATPGRLLDHHERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP-GLEEFLVDCSGDQESDKT 508
P T Q F +AT+ EI ++ F V + S +E+ L+ + ++
Sbjct: 176 PFTRQTFFYSATMAPEI-ERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRK---- 230
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
+ +F +K++ L LI E + I+FCN+ + V LK+ + P H
Sbjct: 231 -DRSFADKRAVLRALIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNAS-----PIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R + F R L LV +D A+RG+D V HV FD P P +YV R+
Sbjct: 285 DLDQSVRTRTLDGF---RDGTVHL-LVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVV 644
GRT R AG GKAF
Sbjct: 341 GRTGR-AGRKGKAFTIAT 357
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 196/407 (48%), Gaps = 38/407 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F+ELG ++ ++ +L + +P+ IQA + P++ GK + Q+G+GKT A+ LP
Sbjct: 4 SEKTFRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ + + SP++++LAPT ELA QV S +K + + GG
Sbjct: 64 LLNSI---------DPNTNSPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQS 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QL L+ G +++ TPGR M ++ G L+L +L+ +LDE D + F ++ +
Sbjct: 115 MHQQLNALRRGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLK-MGFIDDIEWI 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P +I + + V +E+ V S
Sbjct: 174 LEHTPKQRQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQH--- 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
NK AL++++E I+F +C ++ L+ + P H
Sbjct: 231 ---------NKLEALVRVLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASS-----PLH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
++Q+ R E + K +L ++ TD A+RG+D + HVV +D P D YV
Sbjct: 277 GDMNQQAR-----ERAVDQLKRGKLDIIIATDVAARGLDVERIGHVVNYDIPYDTEAYVH 331
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGH--PLHDVPS 669
R+GRT R AG TG A +FV +++ + R +ER K P+ D+PS
Sbjct: 332 RIGRTGR-AGRTGMAILFVTHREMRML-RTIERATKSRISPM-DIPS 375
>gi|350424793|ref|XP_003493914.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 566
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 190/400 (47%), Gaps = 30/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK S LL+ I +KTIVF I T R+V+ I ++ R + H
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVF---IETKRRVDEITRKMKRDGW--PAVCIHGD 387
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R +++F + ++ LV TD A+RG+D V V+ FD+P +YV R+G
Sbjct: 388 KTQQERDWVLQDFRSGKAP----ILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIG 443
Query: 628 RTARGAGGTGKAFIFVV----GKQVSLAQRIMERNRKGHP 663
RT R TG A+ F K L Q + E N+ +P
Sbjct: 444 RTGRRQ-KTGTAYTFFTPNNSNKANDLIQVLKEANQVINP 482
>gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 411
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 176/351 (50%), Gaps = 27/351 (7%)
Query: 282 SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341
SL+ F +P+ IQ A P V++G+ + Q+G+GKT A+ +PVI +L +++ S S
Sbjct: 15 SLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVIDKLHKQK----SSS 70
Query: 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLI 401
S + V++ PT ELA Q+ S+S+ ++ V GG Q Q+ L++G+D+L+
Sbjct: 71 RSEGIKCVVMVPTRELAIQIAEVFSSISRY-TKVKTFSVFGGVEQGPQIAKLEKGIDILV 129
Query: 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461
+TPGR L+ +G ++L + ILDE D + D F +Q LI P Q LF +AT
Sbjct: 130 STPGRMFDLVSQGHIRLDRVDTLILDEADHML-DLGFIKDIQDLIRHLPKRRQTLFFSAT 188
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
+ +I + + + + ++ ++ + + D +K+ L
Sbjct: 189 IDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHSVAFVAMD------------DKRFFLE 236
Query: 522 QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFT 581
++I ++ K +VF V +V N L+R + ++ L H Q RL M EF
Sbjct: 237 RVIRQNADKKILVFVRTKVRAERVFNALERME-----IKSLTIHGDKQQSDRLTAMNEFK 291
Query: 582 TSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRTARG 632
K L+ TD ++RGID VD+V+ +D P P YV RVGRT RG
Sbjct: 292 KGNVK----ILIATDVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRG 338
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 183/386 (47%), Gaps = 28/386 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT I E+ D + + + + ++LV DK
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPV------DKK 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K L++ + + +VF T + VE ++ R+ + H
Sbjct: 230 ------RKAELFCHLLQANRWRQALVFAK---TRKSVEELVGLLQRQG--IAADSIHGDK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q RL ++ F LV TD A+RG+D + VV FD P +YV R+GR
Sbjct: 279 PQPARLRALQRFKAGEVD----LLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG TG+A V +V L I
Sbjct: 335 TGR-AGATGQALSLVCADEVELLAAI 359
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/386 (31%), Positives = 183/386 (47%), Gaps = 28/386 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT I E+ D + + + + ++LV DK
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPV------DKK 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
K L++ + + +VF T + VE ++ R+ + H
Sbjct: 230 ------RKAELFCHLLQANRWRQALVFAK---TRKSVEELVGLLQRQG--IAADSIHGDK 278
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q RL ++ F LV TD A+RG+D + VV FD P +YV R+GR
Sbjct: 279 PQPARLRALQRFKAGEVD----LLVATDVAARGLDIEEMPLVVNFDLPIVAEDYVHRIGR 334
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRI 654
T R AG TG+A V +V L I
Sbjct: 335 TGR-AGATGQALSLVCADEVELLAAI 359
>gi|291239093|ref|XP_002739459.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Saccoglossus
kowalevskii]
Length = 851
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 219/464 (47%), Gaps = 63/464 (13%)
Query: 212 KNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY----EPTD-------CPKQRHKYSA 260
KN + R +KH + G RG RS S ++ + +P D K YS+
Sbjct: 2 KNKKNTKKRPDKHWRKG----RGKRSSESEKDVDHVQIVKPMDTLSPGFSANKVIDGYSS 57
Query: 261 DGDFFSRK-------------SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS 307
D + +RK F+ +G S +++ + R+ + P+ IQ P +++ K
Sbjct: 58 DAELNTRKMVAKQNRKKKKSGGFQAMGLSMGVLKGIFRKGYKVPTPIQRKCVPIIMDRKD 117
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
+ ++GSGKT A+L+P+ ++L++ S R +IL+PT ELA Q L R
Sbjct: 118 VVAMARTGSGKTAAFLIPMFEKLQRH-------SAKTGARALILSPTRELAVQTLKFTRE 170
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
L K + RS V+ GG + Q L E D++IATPGR + ++ E L+L +L + D
Sbjct: 171 LGKF-LGLRSAVILGGDKMDDQFAALHENPDIIIATPGRLLHVLVEMDLKLNSLEYVVFD 229
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D LF + F L+ +I P Q L +ATLP KL+ F G++
Sbjct: 230 EADRLF-EMGFAEQLEEIIQRLPDDRQTLLFSATLP-----KLLVEFARA------GLN- 276
Query: 488 ISPGLEEFLVDCS-GDQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKIVTCRK 544
P L V+ DQ T +K S LL L+ P +T++F +
Sbjct: 277 -DPMLIRLDVESKLSDQLKLAFFSTRADDKISLLLHLLRNVIKPSEQTVIFLATMHHVDY 335
Query: 545 VENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDF 604
++ IL + + +++LD R N+ +FT ++ + ++ TD A+RGID
Sbjct: 336 IKEIL-----TQAGINCCHIYSSLDPAARKINVAKFTHKKA----MVMLVTDVAARGIDI 386
Query: 605 AGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQV 648
+D+V+ F+FP P +V RVGR AR AG TG A+ + ++
Sbjct: 387 PLLDNVINFNFPAKPKLFVHRVGRVAR-AGRTGTAYSLIASDEL 429
>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
Length = 435
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 194/381 (50%), Gaps = 33/381 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL + ++++L+ + + +P+ IQ + P ++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E + P R ++L PT ELA Q+ + ++ + + R +V+ GG QK
Sbjct: 63 LNKEH----QNAKGPRPIRALVLTPTRELAIQIEESFKAYGR-NLSLRHLVIFGGVGQKA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L GVD+LIATPGR + L+ +G + L ++ +LDE D + D F ++ I+
Sbjct: 118 QTDALHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRML-DMGFIHDVKKTIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCS-GDQESD 506
P Q LF +AT+P EI + D KV + P + + +E+ + GD
Sbjct: 177 LPAKRQTLFFSATMPPEIQKLANTILVDPLKVEVTP-VSSTAEKIEQMIYFVEKGD---- 231
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KK+ L+ +++ + +VF T + ++K D + V+ H
Sbjct: 232 ---------KKNLLIHILQDKTIQTALVFTR---TKHGADRVVK--DLIKVGVKAEAIHG 277
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R + T ++K R+ LV TD A+RGID + HV+ ++ P P YV R+
Sbjct: 278 NKSQNAR---QRALTNFKAKTTRI-LVATDIAARGIDVDELTHVINYELPNIPETYVHRI 333
Query: 627 GRTARGAGGTGKAFIFVVGKQ 647
GRT R AG +G +F F G++
Sbjct: 334 GRTGR-AGNSGISFSFCDGEE 353
>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
HTCC2501]
gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
HTCC2501]
Length = 422
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 192/372 (51%), Gaps = 33/372 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++ ++ +LK++N+ RP+ IQA A P V+ + + + Q+G+GKT A+ +P++Q
Sbjct: 2 TFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
L ++ G G +I+ PT ELA Q+ SL+ G R+ V+ GG +Q
Sbjct: 62 HLERDRRYG---GKRGVVNALIVTPTRELAIQI---GESLTAYGHYTGIRNTVIFGGVKQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+E L+ GVD+L+ATPGR + L+ +GI+ L + +LDE D + D F ++ +I
Sbjct: 116 GKQVEALRRGVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRML-DMGFIHDIRKII 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+P +I + ++ D KV + P + + + ++L + ++
Sbjct: 175 ARLPAERQSLFFSATMPDDIVSLSRKILSDPVKVAVSP-VSSTAETIRQYLYYTNKSDKN 233
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
D LL +++ + + ++F T + I+K +K ++ H
Sbjct: 234 D------------LLLHILKDPDMDQVLLFAR---TKHGADRIVKNLGKK--KISAAAIH 276
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + +F + + LV TD A+RGID + +VV FD P YV R
Sbjct: 277 GNKSQNQRQKALGQFKDGKVR----VLVATDIAARGIDIDQLRYVVNFDIPNVAETYVHR 332
Query: 626 VGRTARGAGGTG 637
+GR+ R AG G
Sbjct: 333 IGRSGR-AGEEG 343
>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
Length = 461
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 189/403 (46%), Gaps = 54/403 (13%)
Query: 251 CPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
P R + AD F LG S+ +++ L + F +P+ IQ A P V++G+ +
Sbjct: 1 MPAHRKRPMAD--------FSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMG 52
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRS 367
Q+G+GKTLA+ LP++ RL L PR + ILAPT EL +Q+ +N
Sbjct: 53 LAQTGTGKTLAFGLPLLHRL-------LGVGHPPPPRTIRALILAPTRELVTQIATNLEL 105
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
+K G P + + +TGG Q E L G D+++ATPGR + L+ + L + +LD
Sbjct: 106 FTK-GTPVKVVTITGGASINRQTERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLD 164
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG 484
E D + D F +L+ + P+ Q L +AT+P ++ +L + P V PG
Sbjct: 165 EADQML-DMGFIHSLRKIARFLPLKRQTLLFSATMP-KLIEELAHTYLREPVKVQVAPPG 222
Query: 485 --MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTC 542
+ +I+ G+ TP+ +K L ++K P + +VF
Sbjct: 223 KPVEKIAQGVHF-------------TPQG---DKAKLLESYLQKHPGEQALVFGRTKHGS 266
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRG 601
K+ +L + K + H Q R + EF ++ L LV TD A+RG
Sbjct: 267 EKLMKLLVSWGFKAGSI-----HGNKSQNQRDRTLTEF-----RDGSLDVLVATDVAARG 316
Query: 602 IDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVV 644
ID GV HV +D P P YV R+GRTAR AG G A FV
Sbjct: 317 IDIPGVRHVYNYDMPNVPENYVHRIGRTAR-AGAEGSAVAFVA 358
>gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella
aurantiaca DW4/3-1]
gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella
aurantiaca DW4/3-1]
Length = 812
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 207/430 (48%), Gaps = 44/430 (10%)
Query: 249 TDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
T+ P + +Y AD SF++L S+ + ++ + + P+ +QA AF P +EG+
Sbjct: 16 TETPSRPAEYVAD------VSFEDLHLSEPLRRAIAERGYTHPTPVQAKAFQPAMEGRDL 69
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368
I+ ++G+GKT A+ LP+++++ +E + R +IL PT ELA QV R+L
Sbjct: 70 IVRSKTGTGKTAAFGLPLLEKIPADERR---------VRALILCPTRELALQVADELRAL 120
Query: 369 SKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
K GV + + GG K Q + L+EG +++ TPGR I G L+L A+LD
Sbjct: 121 GKYKGV--KVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHIGRGNLKLDACDHAVLD 178
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + N + F + ++ P Q L +AT+P +I N + + + ++ G
Sbjct: 179 EADEMLN-QGFYEEVTRILDRLPKNRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVF 237
Query: 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVEN 547
+ D SD P K L+ ++EK+ I+FCN V
Sbjct: 238 TVEHIHHIRYDV-----SDAFP------KPRNLIYVLEKAEPPNAIIFCNTRDDTALVTA 286
Query: 548 ILKR--FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFA 605
+L R FD + + L Q+ R M + R + A F+V TD A+RGID +
Sbjct: 287 VLNRNGFDAEL-------LNGDLPQKERERVMGK--VKRGEVA--FMVATDIAARGIDIS 335
Query: 606 GVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLH 665
G+++V+ + P DP+ Y+ RVGRT R G G A G++++ + ++
Sbjct: 336 GLEYVINYSLPEDPAVYLHRVGRTGR-IGNKGTAINLFSGRELATYTTLEKKYGIKFEKQ 394
Query: 666 DVPSAFELMR 675
++P+ E MR
Sbjct: 395 EMPAPEEAMR 404
>gi|441504046|ref|ZP_20986043.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441428219|gb|ELR65684.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 446
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 185/379 (48%), Gaps = 36/379 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG +I+ L F +P++IQ A P + GK + + ++GSGKTLA+LLP +QR
Sbjct: 3 FKDLGLDQRLIKKLNHLAFDKPTEIQQTAIPVAILGKDLLASSKTGSGKTLAFLLPAMQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + T PRV+IL PT ELA QV + R+L G P+ +V GG Q
Sbjct: 63 MYR-----CKPFTRRDPRVLILTPTRELAKQVFAQLRTLI-AGTPYDGALVVGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI-SS 448
++ ++ ++ATPGR ++ L L ILDE D + D FE L+ + ++
Sbjct: 117 VKAFRKDPMFVVATPGRLADHLEHRSTHLDGLEMLILDEADRML-DLGFEAQLRRIHEAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+ Q L +ATL + + + D M RIS G S +Q +D T
Sbjct: 176 NHRRRQTLMFSATLD---HTDVASIASD----MLNAPKRISIG-------HSAEQHTDIT 221
Query: 509 PETAF---LNKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
L+ K ALL +++E + I+F T E + K + E +++ +
Sbjct: 222 QRFMLCDHLDHKQALLDKILETEDYDQLIIFT---ATRADTERLTKELN--ERKLKAVAL 276
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
L+Q R + M +F ++ LV TD ASRG+D + V HV+ FD P+ EYV
Sbjct: 277 SGDLNQTQRNSIMSQF----ERDCHKILVTTDVASRGLDISKVSHVINFDMPKHAEEYVH 332
Query: 625 RVGRTARGAGGTGKAFIFV 643
RVGRT R AG G A V
Sbjct: 333 RVGRTGR-AGNKGDAISLV 350
>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
Length = 631
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 183/378 (48%), Gaps = 27/378 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G + + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 197 TFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 256
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + S S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 257 QLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGVSTGY 315
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G +VL TPGR M +I G + L LR +LDE D + D FE A++ L+ S
Sbjct: 316 QIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRML-DMGFEPAMRRLVGS 374
Query: 449 ----SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
S Q L +AT P +I + + + G+ + D E
Sbjct: 375 PGMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGV----------VGAACNDVE 424
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
T F +K+ LL L++ + +T+VF + T R+ + I ++ +V
Sbjct: 425 QTFVQVTKF-SKREQLLDLLKTTGTERTMVF---VETKRQADFIATYLCQE--KVPTTSI 478
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H +Q R + +F + + +V T A+RG+D V HVV FD P+D EYV
Sbjct: 479 HGDREQRERELALADFRSGKCP----VMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVH 534
Query: 625 RVGRTARGAGGTGKAFIF 642
R+GRT R G TG+A F
Sbjct: 535 RIGRTGR-CGNTGRAVSF 551
>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
Length = 613
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 120/393 (30%), Positives = 190/393 (48%), Gaps = 30/393 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF E+ DY + ++RQ + P+ IQA A+P + G + + ++GSGKTLA++LP I
Sbjct: 116 QSFDEVCFPDYCMNEIRRQRYTEPTPIQAQAWPIAMSGHNMVGIAKTGSGKTLAFILPAI 175
Query: 328 QRLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ Q+ LQ P ++LAPT ELA Q+ S R+ + GG +
Sbjct: 176 LHINGQQPLQ-----RGDGPIALVLAPTRELAQQIQSVANDFGSSAY-VRNTCIFGGAPR 229
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q +L+ GV ++IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 230 SRQANDLERGVQIVIATPGRLLDFLQGGATNLKRCTYLVLDEADRML-DMGFEQQIRKIL 288
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQE 504
Q L +AT P E+ KL E F + + G +S + +F+ C+ ++
Sbjct: 289 GQIRPDRQILMWSATWPKEV-RKLAEDFLGNYIQINIGSLELSANHNIRQFVEVCAEHEK 347
Query: 505 SDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
K K L + ++S K I+F + T +KV+ L RF V V
Sbjct: 348 GGKL--------KDLLSHIYDQSTSPGKIIIF---VATKKKVDE-LARFI-NAFGVGVGS 394
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R + + +F R LV TD A+RG+D G+ +V+ FDFP+ +YV
Sbjct: 395 IHGDKSQMDRDSVLNDFRNGRHN----ILVATDVAARGLDVDGIKYVINFDFPQSSEDYV 450
Query: 624 RRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
R+GRT R TG ++ F K A+ ++E
Sbjct: 451 HRIGRTGR-KHSTGTSYAFFTRKNAKCARALIE 482
>gi|349699158|ref|ZP_08900787.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 445
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 127/414 (30%), Positives = 195/414 (47%), Gaps = 36/414 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ + K R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREKGRAHPKGA----RALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ ++++
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEADRML-DMGFVRDIRKIVAA 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + D P +++P + D+
Sbjct: 177 LPTDRQTLLFSATMPKTISDLAHGLLRD------PATVQVTPP------SSTVDRIRQAV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK+ AL L++ V + +VF KV L E + H
Sbjct: 225 MFVDTGNKREALKLLVDSPKVERAVVFTLMKHEANKVAAFL-----SEHGITAEAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R M F + K LV TD A+RGID V HV +D P P YV R+GR
Sbjct: 280 SQGARERAMSGFRSGNVK----VLVATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGR 335
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERN-------RKGHPLHDVPSAFELMR 675
TAR AG G A +Q + + I E+N HP H + MR
Sbjct: 336 TAR-AGREGWAVSLCDAEQRAWLRDI-EKNIGKKIPVVSEHPYHSEAAENSTMR 387
>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
Length = 412
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 200/394 (50%), Gaps = 35/394 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++++ + P+ IQ+ A PV++GK + + Q+G+GKT A+ LP+++
Sbjct: 2 NFSDLGLSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ ++S SP+ +I+ PT ELA+Q+ ++ ++ SK + R++ V GG +
Sbjct: 62 TLLRKP------NSSKSPKFLIITPTRELAAQIEASAQTYSKY-ISCRTLAVFGGVKIGP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR + L ++G + L + +LDE D + D F A++ +
Sbjct: 115 QIRQLKQGVDVLIATPGRLLDLSEQGEVDLKMIDVLVLDEADRML-DMGFIPAIRRIQKL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT EI L + + + P ++P + D+
Sbjct: 174 LPATKQTLMFSATYSDEI-RTLAQTY-----LRRPVEVSVTP-------KNAAAHTVDQL 220
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+KSA+LQ L+ + +VF T +++ D+ +R H
Sbjct: 221 IYPVDKKQKSAVLQYLLNNYGWVQVLVFSR---TKHGANKLVRELDK--ANIRAAAIHGN 275
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R + +F + + LV TD ASRGID A + V+ FD P P +YV R+G
Sbjct: 276 RSQSQRTKALADFKSGKIA----VLVATDIASRGIDIAQLPVVINFDLPNVPEDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVVG---KQVSLAQRIMERN 658
RT R AG G+A V KQ+ +R++ R
Sbjct: 332 RTGR-AGSNGRAISLVCADEVKQLRDIERVISRQ 364
>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 545
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 187/383 (48%), Gaps = 32/383 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +++++K + + P+ IQA A P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L GL++ PR +IL PT ELA QV + ++ ++ V R V GG R +
Sbjct: 62 IL------GLTRGNGHHPRALILTPTRELALQVGESIKAYARK-VSLRCTVAFGGVRIEP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G+D+L+ATPGR + L + L L ++ + DE D + D F + +++
Sbjct: 115 QIARLERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRML-DLGFSGEINAILDL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P + + +AT Y ++ K++ P I+P + + K
Sbjct: 174 LPTVRRTMLFSAT-----YTPQIKALA-AKMLDKPEYIEITPDT------AAAEAVQQKV 221
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
NK LL LIEK + +VF ++ + L + V H +
Sbjct: 222 HHVNKDNKLPLLLHLIEKQKQDRILVFARTRTWANRLTDKLAAHG-----ISVAALHGSK 276
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R ++EF K+ ++ LV TD A+RG+D + + VV +D P P +YV R+G
Sbjct: 277 SQSLRKRTLEEF-----KDGKIHILVATDVAARGLDISNLPLVVNYDIPNSPEDYVHRIG 331
Query: 628 RTARGAGGTGKAFIFVVGKQVSL 650
RT R AG +G A V ++ +L
Sbjct: 332 RTGR-AGVSGIAVSLVSPEERNL 353
>gi|381166173|ref|ZP_09875390.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Phaeospirillum molischianum DSM 120]
gi|380684620|emb|CCG40202.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Phaeospirillum molischianum DSM 120]
Length = 432
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 199/397 (50%), Gaps = 28/397 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++++L + + P+ IQ + P ++ G + Q+G+GKT ++ LP++QR
Sbjct: 4 FSDLGLAEPLLKALATEGYTSPTPIQEQSIPHLLAGHDVLGLAQTGTGKTASFALPLLQR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + + KST RV++L PT ELA QV + R+ R +V GG Q
Sbjct: 64 LEQFKKRAMPKST----RVLVLTPTRELAVQVGQSFRTYG-SQYRLRHALVFGGVGMVPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVD+L+ATPGR + L+ + ++L ++ +LDE D + D F ++ ++++
Sbjct: 119 IKTMAGGVDILVATPGRLLDLMSQDAIRLDSVEALVLDEADRML-DMGFIQPIRKIVAAM 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P + Q + +AT+P I L E V+ P ++P V + ++ K
Sbjct: 178 PKSRQTVLFSATMPDSIVG-LAE-----SVLHRPVRVEVAP------VSSTAEKIDQKVM 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAALD 569
NK++ L +++ V + +VF +V +L + + H
Sbjct: 226 FVDRENKRTLLTEILAGKDVGRALVFTRTKHGANRVAEMLDKAG-----ISADAIHGNKS 280
Query: 570 QETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGRT 629
Q R + +F + K LV TD A+RGID G+ HV+ ++ P +P YV R+GRT
Sbjct: 281 QGARQKALADFRDGKIKA----LVATDIAARGIDVDGITHVLNYELPNEPESYVHRIGRT 336
Query: 630 ARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHD 666
AR AG +G A +V+ + I + R+ P+ +
Sbjct: 337 AR-AGASGIAVSLCDADEVAYLRAIEKTIRQSVPVDE 372
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 121/417 (29%), Positives = 202/417 (48%), Gaps = 52/417 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILAKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS---GDQESD 506
P Q L +AT EI +++ GL + V+ S + ++
Sbjct: 176 PKNRQNLLFSATFSDEI-------------------RQLAKGLVKDPVEISVAKRNTTAE 216
Query: 507 KTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
++ ++ K L +LI+ + + +VF ++ L +E V
Sbjct: 217 TVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLVFSKTKHGANRLAKTL-----EEKGVSAA 271
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H Q R + F +S + R+ LV TD A+RG+D + V+ D P+ P +Y
Sbjct: 272 AIHGNKSQGARTKALANF---KSGQVRV-LVATDIAARGLDIEQLPQVINVDLPKVPEDY 327
Query: 623 VRRVGRTARGAGGTGKAFIFVV---GKQVSLAQRIMERNRKGH------PLHDVPSA 670
V R+GRT R AG TGKA FV K++ +R++++ H P++ VP +
Sbjct: 328 VHRIGRTGR-AGATGKAISFVSEDEAKELFAIERLIQKVLPRHVLEGFEPVNKVPES 383
>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 582
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 126/380 (33%), Positives = 185/380 (48%), Gaps = 35/380 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ ++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 65 SFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLT 124
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q ++ + PR +IL PT ELA+QV N K ++ GG
Sbjct: 125 LLEQ------GRARARMPRTLILEPTRELAAQVEENFVRYGK-NHKLNVALLIGGVSFGD 177
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L GVDVLIATPGR + ++ G L L + ++DE D + D F ++ +
Sbjct: 178 QDTKLLRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRML-DMGFIPDIERICKL 236
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKV---VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI +LV F V V P S + + LV SG ++
Sbjct: 237 VPFTRQTLFFSATMPPEI-QRLVSQFLSNPVRVEVSKPASANTS--ITQLLV-ASGREDY 292
Query: 506 DKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ K+ L +LI + + IVFCN+ V L++ V+
Sbjct: 293 E---------KRETLRELIRNADQLQNGIVFCNRKRDVAVVHRSLQKHG-----FNVVCL 338
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H +DQ R + +F R+ EA L LV +D A+RG+D V HV +D P +YV
Sbjct: 339 HGDMDQHARTQALDQF---RTGEATL-LVASDVAARGLDIPAVSHVFNYDVPHHSEDYVH 394
Query: 625 RVGRTARGAGGTGKAFIFVV 644
R+GRT R AG TG A + V
Sbjct: 395 RIGRTGR-AGRTGTAIMLVT 413
>gi|383458360|ref|YP_005372349.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380732541|gb|AFE08543.1| DEAD-box ATP dependent DNA helicase [Corallococcus coralloides DSM
2259]
Length = 805
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 196/408 (48%), Gaps = 41/408 (10%)
Query: 247 EPT-DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG 305
EPT P + ++ + SF E+ S+ + +L + + P+ +QA AF P + G
Sbjct: 6 EPTPGAPAPDEASTRPAEYIADVSFDEMNLSEPLRRALAERGYTSPTPVQAKAFGPAMAG 65
Query: 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365
K I+ ++G+GKT A+ LP+++++ +E + R +IL PT ELA QV
Sbjct: 66 KDLIVRSKTGTGKTAAFGLPLLEKIPADEKR---------VRALILCPTRELALQVAEEL 116
Query: 366 RSLSKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424
+L+K GV + + GG K Q + L+EG +++ TPGR I G L+L A
Sbjct: 117 TTLAKYKGV--KVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHINRGNLKLDGCDHA 174
Query: 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
+LDE D + N + F + ++ P T Q L +AT+P +I N + + + ++ G
Sbjct: 175 VLDEADEMLN-QGFYEEVTRILDRLPKTRQVLLFSATVPTDIQNLIARYTTNAETLLLSG 233
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK 544
+ D SD+ P K L+ ++EK S I+FCN
Sbjct: 234 DVFTVEHIHHIRYDV-----SDQFP------KPRNLIYILEKEEPSNAIIFCNTRDDTAL 282
Query: 545 VENILKR--FDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRG 601
V +L R FD + + L Q+ R E + K + F+V TD A+RG
Sbjct: 283 VTAVLNRNGFDAEL-------LNGDLPQKER-----ERVMGKVKRGEVAFMVATDIAARG 330
Query: 602 IDFAGVDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVS 649
ID +G+++V+ + P DP+ Y+ RVGRT R G G A G++++
Sbjct: 331 IDISGLEYVINYSLPEDPAVYLHRVGRTGR-IGNKGTAINLFSGRELA 377
>gi|156841974|ref|XP_001644357.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114998|gb|EDO16499.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 501
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 189/389 (48%), Gaps = 49/389 (12%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+L SD ++++++ F + +QA PP++ G+ + A ++GSGKTLA+L+P I
Sbjct: 37 KNFKDLKLSDPTLKAIEKMGFTSMTPVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 96
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGF 384
E L L V+++ PT ELA Q+ R L + F S +V GG
Sbjct: 97 -----EMLHSLKFKPRNGTGVIVITPTRELALQIFGVVREL----MEFHSQTFGIVIGGA 147
Query: 385 RQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
++ + E L +GV++L+ATPGR + L NL+ ++DE D + + FE ++
Sbjct: 148 NRRQEAEKLIKGVNMLVATPGRLLDHLQNTKGFVFKNLKALVIDEADRIL-EIGFEDEMK 206
Query: 444 SLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI--------SPGLEE 494
+I P Q + +AT + VE + GP + + GLE+
Sbjct: 207 QIIKILPNEDRQSMLFSATQTTK-----VEDLARISLRKGPLFINVVTERDTSTADGLEQ 261
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
V C ESDK FL L ++++ K IVF + + R +L D
Sbjct: 262 GYVVC----ESDKR----FL----LLFSFLKRNQKKKIIVFLSSCNSVRYYAELLNYID- 308
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
+ VL H Q+ R EF + R LVCTD A+RG+D VD ++ FD
Sbjct: 309 ----LPVLELHGKQKQQKRTNTFFEFCNAE----RGILVCTDVAARGLDIPAVDWIIQFD 360
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFV 643
P DP +Y+ RVGRTARG G GK+ +F+
Sbjct: 361 PPDDPRDYIHRVGRTARGTKGKGKSLMFL 389
>gi|145232875|ref|XP_001399810.1| ATP-dependent RNA helicase dbp8 [Aspergillus niger CBS 513.88]
gi|152013493|sp|A5AA68.1|DBP8_ASPNC RecName: Full=ATP-dependent RNA helicase dbp8
gi|134056731|emb|CAK44220.1| unnamed protein product [Aspergillus niger]
gi|350634649|gb|EHA23011.1| hypothetical protein ASPNIDRAFT_37042 [Aspergillus niger ATCC 1015]
Length = 522
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 194/411 (47%), Gaps = 54/411 (13%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ SF L + ++I SL +P+ IQ P ++ G+ CI ++GSGKT+A+ +P
Sbjct: 90 AQNSFASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVP 149
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++Q+ ++ ++L PT ELA Q+ +++S + +++TGG
Sbjct: 150 MLQKWAEDPFGIFG---------LVLTPTRELALQIYEQIKAIS-APQSMKPLLITGGTD 199
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIK----EGILQLINLRCAILDEVDILFND------ 435
+ Q L + V+IATPGR I + I L +R +LDE D L
Sbjct: 200 MRPQAVALAQRPHVVIATPGRLADHINTSGSDTIRGLKRVRMVVLDEADRLLAPGHGSML 259
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
D E L +L SS Q L TATL P+ + + M R S F
Sbjct: 260 PDVETCLSALPPSS--ERQTLLFTATL-----------TPEVRALKS--MPRPSTKPPIF 304
Query: 496 LVDCSGDQESDKTP---ETAF---LNKKSALLQLI---EKSPVSKTIVFCNKIVTCRKVE 546
+ + S + + P +T + + A L ++ E + I+FCN T +E
Sbjct: 305 VTEISTENNASIPPTLKQTYLKVPMTHREAFLHVLLSTEANASKPAIIFCNHTKTADLLE 364
Query: 547 NILKRFDRKETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAG 606
+L+R RV H+ L Q R AN+ F R+ ARL LV TD ASRG+D
Sbjct: 365 RMLRRLSH-----RVTSLHSLLPQSERNANLARF---RASAARL-LVATDVASRGLDIPS 415
Query: 607 VDHVVLFDFPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMER 657
V+ VV FD PR+P +YV RVGRTAR AG G++ V + VSL I ER
Sbjct: 416 VELVVNFDVPRNPDDYVHRVGRTAR-AGRKGESVTLVGQRDVSLVLAIEER 465
>gi|419836253|ref|ZP_14359696.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421342720|ref|ZP_15793125.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|423735152|ref|ZP_17708360.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424009084|ref|ZP_17752030.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|395943237|gb|EJH53912.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|408630321|gb|EKL02932.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408858118|gb|EKL97797.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408864734|gb|EKM04152.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 397
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 182/377 (48%), Gaps = 33/377 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M + + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDVYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q+L +ATL ++ D + + ++L+ D
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFC-NKIVTCRKVENILKRFDRKETRVRVLPFHA 566
KSALL LI + + ++F K + V + KR E FH+
Sbjct: 229 -------TKSALLSHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEA------FHS 275
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
Q R +++F + + K +LV T A+RGID + VV +D P EYV R+
Sbjct: 276 GRSQAIRAQLLEDFKSGKIK----YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRI 331
Query: 627 GRTARGAGGTGKAFIFV 643
GRT R A G+A FV
Sbjct: 332 GRTGR-AEAVGEAISFV 347
>gi|380011998|ref|XP_003690078.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 566
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 190/400 (47%), Gaps = 30/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK S LL+ I +KTIVF I T R+V+ I ++ R + H
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVF---IETKRRVDEITRKMKRDGWPAVCI--HGD 387
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R +++F + ++ LV TD A+RG+D V V+ FD+P +YV R+G
Sbjct: 388 KTQQERDWVLQDFRSGKAP----ILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIG 443
Query: 628 RTARGAGGTGKAFIFVV----GKQVSLAQRIMERNRKGHP 663
RT R TG A+ F K L Q + E N+ +P
Sbjct: 444 RTGRRQ-KTGTAYTFFTPNNSNKANDLIQVLKEANQVINP 482
>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
Length = 533
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 205/409 (50%), Gaps = 33/409 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++++ + P+ IQA A PP +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K + ++ GG Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYTKH-LNLTKALLIGGVSFGEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + +
Sbjct: 117 DKLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRML-DMGFIPDIERIFQMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+ EI ++ F V + + +E+ ++ ++ +
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREA 234
Query: 509 PETAFLNKKSALLQLI--EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHA 566
E K+ L LI E + I+FCN+ + V LK++ P H
Sbjct: 235 TE-----KRKVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYG-----YDAAPIHG 284
Query: 567 ALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRV 626
LDQ R ++ F R+ + R FLV +D A+RG+D V HV FD P +YV R+
Sbjct: 285 DLDQSQRTKTLEGF---RNGDLR-FLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRI 340
Query: 627 GRTARGAGGTGKAFIFVV---GKQVSLAQRIMERN--RKGHPL-HDVPS 669
GRT R AG GKA + V K + +R+++R R +PL D P+
Sbjct: 341 GRTGR-AGRDGKAIMICVPRDEKNLEDVERLVQREIPRLDNPLGGDAPA 388
>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
mellifera]
Length = 566
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/400 (30%), Positives = 190/400 (47%), Gaps = 30/400 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
NK S LL+ I +KTIVF I T R+V+ I ++ R + H
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVF---IETKRRVDEITRKMKRDGWPAVCI--HGD 387
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q+ R +++F + ++ LV TD A+RG+D V V+ FD+P +YV R+G
Sbjct: 388 KTQQERDWVLQDFRSGKAP----ILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIG 443
Query: 628 RTARGAGGTGKAFIFVV----GKQVSLAQRIMERNRKGHP 663
RT R TG A+ F K L Q + E N+ +P
Sbjct: 444 RTGRRQ-KTGTAYTFFTPNNSNKANDLIQVLKEANQVINP 482
>gi|410097606|ref|ZP_11292587.1| hypothetical protein HMPREF1076_01765 [Parabacteroides goldsteinii
CL02T12C30]
gi|409223696|gb|EKN16631.1| hypothetical protein HMPREF1076_01765 [Parabacteroides goldsteinii
CL02T12C30]
Length = 431
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 185/392 (47%), Gaps = 41/392 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++ L NF + +Q + P ++EGK I Q+G+GKT AY+LP+I +
Sbjct: 3 FDELDLEEAVLDGLDAMNFQDTTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPLINQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG---FRQ 386
L + + VI+APT ELA Q+ + VP ++ V GG
Sbjct: 63 LSK------GNHPDNAVNAVIMAPTRELAQQIDQQIEGFTYF-VPVSAVAVYGGTDGVAW 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++ G D++IATPGR + +K G + L + +LDE D + D F + +
Sbjct: 116 EQQKRGMEMGADIVIATPGRLLSHLKLGTVDLSQVSYFVLDEADRML-DMGFYDDIMQVY 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q + +AT+P +I + + EE + S E+
Sbjct: 175 KQLPPTCQTIMFSATMPPKIRTLAKTILKNP---------------EEVKIAISRPPET- 218
Query: 507 KTPETAFLNKKSALLQLIE----KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVL 562
+TA++ L+++E +S + I+F + + +++ + LKR + V
Sbjct: 219 -IMQTAYICYDPQKLKILEDLFLQSRPQRVIIFSSSKMKVKELASTLKRM-----KFNVA 272
Query: 563 PFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
H+ L+Q R MKEF LV TD SRGID + V+ +D P DP +Y
Sbjct: 273 AMHSDLEQSQREEVMKEFKNGHID----ILVATDVVSRGIDINDIKLVINYDIPHDPEDY 328
Query: 623 VRRVGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
V R+GRTARG GG G A F+ ++ + +RI
Sbjct: 329 VHRIGRTARGTGGEGLAITFISIEEQAQFKRI 360
>gi|408792586|ref|ZP_11204196.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408463996|gb|EKJ87721.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 471
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 188/387 (48%), Gaps = 28/387 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +L + +++ + +P+ IQ A P +++ + Q+G+GKT A+ LP+I
Sbjct: 6 ETFSDLKLDRSIQKAVVETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMI 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K PR ++L PT ELA QV + K R+ V+ GG Q
Sbjct: 66 HNL----ISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKY-TQIRTAVIFGGVGQN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + + G+DVLIATPGR + L+ + ++ L NL +LDE D + D F ++ +IS
Sbjct: 121 PQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRML-DMGFIHDIRKIIS 179
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI KL +++ P I+P V + + S
Sbjct: 180 YLPKRRQNLFFSATMPSEI-EKLAN-----SILVEPIRIDITP------VSSTVELISQS 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
T +KK+ LL L + KTI+F K+ +L + + ++ H
Sbjct: 228 VMYTELADKKNLLLHLFKDKNFKKTIIFTKTKHGANKISELLNK-----SGIKTDVIHGN 282
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
Q R +++F + +++ LV TD A+RGID + HV+ ++ P P YV R+G
Sbjct: 283 KSQSARQKALEDFRSGKNRA----LVATDLAARGIDIDDITHVINYEIPYVPETYVHRIG 338
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RTAR AG G A + SL + I
Sbjct: 339 RTAR-AGKNGIAIAIAEADERSLIKDI 364
>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 674
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 120/416 (28%), Positives = 200/416 (48%), Gaps = 40/416 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F E DY+++ + R F +P+ IQ +P + G+ + ++GSGKTLA+++P +
Sbjct: 212 QTFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPAV 271
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L K P V+ILAPT ELA Q+ + C + + V GG ++
Sbjct: 272 IHINAQPY--LQKGD--GPIVLILAPTRELALQIKAECDRFGRSSR-ITNTCVYGGTQRG 326
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q LQ GV++ IATPGR + ++ G L + ++DE D + D FE ++ ++S
Sbjct: 327 PQARALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRML-DMGFEPQVRKIVS 385
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM-----GPGMHRISPGLEEFLVDCSGD 502
Q L +AT P E+ + ++ + V++ G H I +E
Sbjct: 386 QIRPDRQTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVV------- 438
Query: 503 QESDKTPETAFLNKKSALLQLIEKSP----VSKTIVFCNKIVTCRKVENILKRFDRKETR 558
E++ PE AL+Q + +KT++FC+ T R ++I + R
Sbjct: 439 -ENNVKPERLL-----ALMQAASAATGGGWTAKTLIFCD---TKRGADDITRLLRRDGW- 488
Query: 559 VRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRD 618
L H Q R + +F T RS ++ TD ASRG+D V +V+ +DFP
Sbjct: 489 -PALSIHGDKKQSERDWVLNQFKTGRSA----IMIATDVASRGLDVKDVKYVINYDFPGT 543
Query: 619 PSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSAFELM 674
+YV R+GRT R AG +G A+ F + LA++++ R+ + VP A E +
Sbjct: 544 IEDYVHRIGRTGR-AGASGVAYSFFSPDKGKLARQLVNCLREAN--QSVPEALETI 596
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 185/389 (47%), Gaps = 35/389 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+
Sbjct: 2 SFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPL-- 59
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L GLSK S R ++L PT ELA+QV + K + RS VV GG +
Sbjct: 60 ------LHGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKY-LNLRSAVVFGGVK 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q+ L++GVD+LIATPGR + L ++ + L ILDE D + D F ++ +
Sbjct: 113 INPQMMRLRKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRML-DMGFIHDIRRI 171
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ + P Q L +AT +I + L + +V P ++P +
Sbjct: 172 MKALPNKRQNLMFSATFSEDIRD-LAKT-----IVNNPVEISVTPRNSTAVSVTQWIHPV 225
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
DK K+ L++LI + + +VF ++ L++ D ++ H
Sbjct: 226 DKN------QKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKD-----IQAAAIH 274
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
Q R + EF + + + LV TD A+RG+D + VV D P +YV R
Sbjct: 275 GNKSQGARTRALSEFKSGKLR----VLVATDIAARGLDIEQLPQVVNLDLPEVAQDYVHR 330
Query: 626 VGRTARGAGGTGKAFIFVVGKQVSLAQRI 654
+GRT R AG TG+A V + L Q I
Sbjct: 331 IGRTGR-AGATGQAISLVSADEAQLLQDI 358
>gi|449296334|gb|EMC92354.1| hypothetical protein BAUCODRAFT_38404 [Baudoinia compniacensis UAMH
10762]
Length = 745
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 194/402 (48%), Gaps = 49/402 (12%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F EL SD ++++ F ++IQ PP++ GK + A ++GSGKTLA+L+P +
Sbjct: 269 QKFAELKLSDKTMKAISEMPFDTMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAV 328
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ L L+ ++ +G V++++PT ELA Q+ R L + +V+ GG ++
Sbjct: 329 EMLYS--LKFKPRNGTG---VIVVSPTRELALQIFGVARELMEHHSQTFGIVI-GGANRR 382
Query: 388 TQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ E L +GV++LIATPGR + ++ +G + N+R ++DE D + + FE ++ +
Sbjct: 383 AEAEKLSKGVNLLIATPGRLLDHLQNTQGFV-FKNVRALVIDEADRIL-EVGFEDEMRQI 440
Query: 446 ISSSPVT-AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG----------MHRISPGLEE 494
I P Q + +AT ++ + ++ + PG H GLE+
Sbjct: 441 IKILPKEDRQTMLFSATQTTKVEDL-------ARISLRPGPLYINVDHHQEHSTVAGLEQ 493
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDR 554
V C D + L +++ P K IVF + + +L D
Sbjct: 494 GYVICEADM------------RFRLLFTFLKRHPKKKIIVFFSSCNCVKYYSELLNYID- 540
Query: 555 KETRVRVLPFHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFD 614
+ VL H Q+ R EF + L+CTD A+RG+D VD +V FD
Sbjct: 541 ----LPVLDLHGKQKQQKRTNTFFEFCNATHGT----LICTDVAARGLDIPAVDWIVQFD 592
Query: 615 FPRDPSEYVRRVGRTARGAGGTGKAFIFVVGKQVSLAQRIME 656
P DP +Y+ RVGRTARGA G GK+ +F+ +V + E
Sbjct: 593 PPDDPRDYIHRVGRTARGATGKGKSLMFLQPNEVGFLGHLKE 634
>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
Length = 647
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 184/377 (48%), Gaps = 27/377 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E + + ++ + + +P+ +Q P + G+ + Q+GSGKT A+LLP++Q+
Sbjct: 213 FEEAALCESLNRNISKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPILQQ 272
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + S P V+I+APT EL +Q+ R + G R +VV GG
Sbjct: 273 LMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAH-GTCVRPVVVYGGISTGHT 331
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +G +VL ATPGR M +I G + L LR +LDE D + D FE A++ L+ S
Sbjct: 332 IREILKGCNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEADRML-DMGFEPAMRKLVGSP 390
Query: 450 PVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ A Q L +AT P +I + + + G+ + CS D E
Sbjct: 391 GIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGA---------CS-DVEQ 440
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFH 565
T F +K+ LL++++ + +T+VF V ++ + + F +E +V H
Sbjct: 441 VVVQVTKF-SKRDQLLEVLKTTGSERTMVF----VETKRQADFIATFLCRE-KVNTTSIH 494
Query: 566 AALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRR 625
+Q R + +F + R LV T A+RG+D V H+V FD P + EYV R
Sbjct: 495 GDREQREREQALGDFRSGRCP----VLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHR 550
Query: 626 VGRTARGAGGTGKAFIF 642
+GRT R G TG+A F
Sbjct: 551 IGRTGR-CGNTGRAVCF 566
>gi|359784545|ref|ZP_09287715.1| ATP-dependent RNA helicase DeaD [Halomonas sp. GFAJ-1]
gi|359298169|gb|EHK62387.1| ATP-dependent RNA helicase DeaD [Halomonas sp. GFAJ-1]
Length = 570
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/406 (30%), Positives = 194/406 (47%), Gaps = 45/406 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +L ++ +++ Q + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 SFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM---VVTGGFR 385
RL EL T P+V+++APT ELA QV + S SK G + + ++ GG
Sbjct: 70 RL---EL------TRREPQVLVMAPTRELAQQVAA---SFSKYGQNLKGLEVAILCGGQE 117
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ QL L+ G +++ TPGR + + G L+L L +LDE D + F ++ +
Sbjct: 118 YREQLGALKRGAQIIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLR-MGFIDDVKRV 176
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
++ +P AQ +F +ATLP EI + D V +E+ +V G
Sbjct: 177 VADTPKNAQRVFFSATLPAEIERIVNRYLVDPVKVAIESRTTTGENIEQRIVRVDGG--- 233
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK-VENILKRFDRKETRVRVLPF 564
K AL +++E PV IVF C VE + R V
Sbjct: 234 ---------AKLEALARILEVEPVDGAIVFVRTRAACTTLVEQLTARG------VNAAGL 278
Query: 565 HAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
LDQ +++E T +R K ++ L+ TD A+RG+D A + HV+ +D P+D Y
Sbjct: 279 SGDLDQ-----SLRERTITRLKRGKVDVLIATDVAARGLDVARITHVINYDLPQDAEAYT 333
Query: 624 RRVGRTARGAGGTGKAFIFV---VGKQVSLAQRIMERNRKGHPLHD 666
R+GRT R AG +G A F G++V ++ + PL D
Sbjct: 334 HRIGRTGR-AGRSGIAITFAGFREGRKVGWMEQATGQKMTEMPLPD 378
>gi|448746912|ref|ZP_21728576.1| DEAD-like helicase [Halomonas titanicae BH1]
gi|445565422|gb|ELY21532.1| DEAD-like helicase [Halomonas titanicae BH1]
Length = 571
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 197/407 (48%), Gaps = 47/407 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +L ++ +++ Q +L PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 SFGDLALLPAVLSAVESQGYLVPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT---GGFR 385
RL EL T P+V+++APT ELA QV + S SK G + + V GG
Sbjct: 70 RL---EL------TRREPQVLVMAPTRELAQQVAA---SFSKYGQNLKGLEVATLCGGQE 117
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ QL L+ G V++ TPGR + + G L+L L +LDE D + F ++ +
Sbjct: 118 YREQLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLR-MGFIDDVKRV 176
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ +P AQ +F +ATLP EI + + KV + G +E+ +V G
Sbjct: 177 VADTPKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESGTT-TGENIEQRIVRVDGGA- 234
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRK-VENILKRFDRKETRVRVLP 563
K AL +++E PV IVF C VE + R V
Sbjct: 235 -----------KLEALSRILEVEPVDGAIVFVRTRAACTTLVEQLTARG------VNAAG 277
Query: 564 FHAALDQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEY 622
LDQ +++E T +R K ++ L+ TD A+RG+D + + HV+ +D P+D Y
Sbjct: 278 LSGDLDQ-----SLRERTITRLKRGKVDVLIATDVAARGLDVSRITHVINYDLPQDAEAY 332
Query: 623 VRRVGRTARGAGGTGKAFIFV---VGKQVSLAQRIMERNRKGHPLHD 666
R+GRT R AG +G A F G++V ++ + PL D
Sbjct: 333 THRIGRTGR-AGRSGIAITFAGFREGRKVGWMEQATGQKMTEMPLPD 378
>gi|366054164|ref|ZP_09451886.1| ATP-dependent RNA helicase DeaD [Lactobacillus suebicus KCTC 3549]
Length = 506
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 183/387 (47%), Gaps = 37/387 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG SD +++++KR + + IQ P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLDGQDVIGQAQTGTGKTAAFGLPIIEH 62
Query: 330 LRQE--ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ E ++Q L I++PT ELA Q L K + VV GG +
Sbjct: 63 IDTENPDIQAL-----------IISPTRELAIQTQEELYRLGKDK-HAKVQVVYGGADIR 110
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ NL+ +L+ TPGR + I ++L NL+ +LDE D + N F ++S+I
Sbjct: 111 RQINNLKNHPQILVGTPGRLLDHINRRTVKLANLKTLVLDEADEMLN-MGFLEDIESIIK 169
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q L +AT+P EI V+ D K V + ++++ V ++ D
Sbjct: 170 QTPEKRQTLLFSATMPPEIKKIGVQFMTDPKQVKIKAKELTTELIDQYYVRSRDFEKFD- 228
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAA 567
+ ++I+ TIVF T R+V+ + K + H
Sbjct: 229 -----------IMTRMIDVQDPDLTIVFGR---TKRRVDELSKGLIARG--YNAAGIHGD 272
Query: 568 LDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
L Q+ R M F + LV TD A+RG+D +GV HV +D P+DP YV R+G
Sbjct: 273 LTQQRRTQIMNRFKAGKID----ILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIG 328
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRI 654
RT R AG G + FV ++ + I
Sbjct: 329 RTGR-AGHHGVSLTFVTPNEMDYLREI 354
>gi|343505019|ref|ZP_08742670.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342809229|gb|EGU44351.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 398
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 200/400 (50%), Gaps = 41/400 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++L + + +P+ IQ A P +++G+ + A Q+G+GKT +++LP++++
Sbjct: 3 FSKLGLSQPITDALNQLGYNKPTSIQNKAIPEILKGQDLLAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E Q + R +IL PT ELA QV R + +P S+ + GG +K Q
Sbjct: 63 LSKGETQRKKRI-----RALILTPTRELACQVEEKVRDYGQH-LPLTSLAMYGGVDEKPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVD+L+ATPGR + L + + + +LDE D + D F + ++
Sbjct: 117 KQALIEGVDILVATPGRLLDLYGKHAVHFDEVEMLVLDEADRML-DMGFIEDINKILDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q+L +ATL NK+ E+ V P F + + +Q S K+
Sbjct: 176 PTDIQHLLFSATLS----NKVRELAKTA--VYNP-----------FEISIAANQASKKSI 218
Query: 510 ETAFL----NKKSALL-QLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
E + +KKSALL LI+++ +T++F I T + ++ +++ F
Sbjct: 219 EQWLIAVDKDKKSALLSHLIKENDWDQTLIF---IETKHGAAKLAQQLEKRGIEAEA--F 273
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H+ Q R +++F + K +++ T +RGID G+ V+ +D P EYV
Sbjct: 274 HSGRSQAVRSQLLQDFKAGKIK----YMIATGVGARGIDIEGLTRVINYDLPFPADEYVH 329
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPL 664
R+GRT R A +G+A FV + + M +R GH L
Sbjct: 330 RIGRTGR-ADASGEAISFV--SRDNFKNLCMIESRLGHLL 366
>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
[Acyrthosiphon pisum]
Length = 641
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 184/379 (48%), Gaps = 28/379 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKE G + ++ +L N+ P+ IQ A P ++ GK I + Q+GSGKT A++LP++
Sbjct: 223 SFKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPILN 282
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E + + P+ +IL+PT ELASQ+ S LS G R + GG
Sbjct: 283 SLISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSN-GTSIRCRALYGGTAVYH 341
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E + GV +++ATPGR + + G++ +LR +LDE D + D F A+Q + S
Sbjct: 342 QREKILSGVHIIVATPGRLIDFVNRGLITFSSLRFIVLDEADRML-DMGFTPAIQCIFSD 400
Query: 449 SPVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ + + L +ATLP+++ K + P IS + E C +
Sbjct: 401 NTMVSSAERSTLMFSATLPIDVQQI-------AKSYLKPDY--ISVAVGEVGGACKDVTQ 451
Query: 505 SDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLP 563
+ E +KK+ L+ L+ E + TIVF + + L + T +
Sbjct: 452 T--FVEVNKFSKKNELVALLNETNDCQGTIVFVEQKRQADFIAAFLSELNYPTTSI---- 505
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H +Q R +++F T + K LV T A+RG+D GV VV FD P+ EYV
Sbjct: 506 -HGDREQPEREKALRDFKTKKMK----VLVATAVAARGLDIMGVTTVVNFDLPKTIEEYV 560
Query: 624 RRVGRTARGAGGTGKAFIF 642
R+GRT R G +G+A F
Sbjct: 561 HRIGRTGR-LGNSGRAVSF 578
>gi|378582099|ref|ZP_09830739.1| ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii
DC283]
gi|377815414|gb|EHT98529.1| ATP-dependent RNA helicase [Pantoea stewartii subsp. stewartii
DC283]
Length = 622
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 35/403 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ESL +++PS IQA P ++ G+ + Q+GSGKT A+ LP++
Sbjct: 7 TFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ T +P++++LAPT ELA QV SK + + GG R
Sbjct: 67 NI---------DPTIKAPQILVLAPTRELAVQVAEAMTEFSKHMRGLNVVALYGGQRYDV 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L++G V++ TPGR + +K G L L NLR +LDE D + F ++++++
Sbjct: 118 QLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLR-MGFIEDVETIMAQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q +AT+P I D + V RI L + + ++
Sbjct: 177 IPEGHQTALFSATMPEAIRRITKRFMKDPQEV------RIQSSL-------TTRPDISQS 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
TA+ K AL++ +E I+F +V L+R AAL
Sbjct: 224 YWTAYGRKTDALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNS---------AAL 274
Query: 569 DQETRLANMKEFTTSRSKEARL-FLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVG 627
+ + A ++E T R K+ RL L+ TD A+RG+D + VV +D P D YV R+G
Sbjct: 275 NGDMNQA-LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDAESYVHRIG 333
Query: 628 RTARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
RT R AG G+A +FV ++ L + I + P ++P+A
Sbjct: 334 RTGR-AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNA 375
>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase [Halanaerobium hydrogeniformans]
gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium
hydrogeniformans]
Length = 529
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 117/402 (29%), Positives = 196/402 (48%), Gaps = 34/402 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL S+ +++++ F + IQ+ A P V+ GK + Q+G+GKT A+ +P+++
Sbjct: 6 FNELDISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLLEE 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + P+ +IL PT ELA QV + L+K ++ V GG + Q
Sbjct: 66 M---------DANKKDPQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GV ++I TPGR M I+ G L+L + +LDE D++ D F +++++
Sbjct: 117 IRALNKGVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVML-DMGFIDDIETVLRDI 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P I +L + + +++ P +E++ +
Sbjct: 176 PEDRQTLFFSATIPKSI-RRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYELRRH------ 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K AL +L++ + IVFCN T + V+ + + + + H L
Sbjct: 229 ------DKLKALTRLLDLNNPELAIVFCN---TRKMVDELNIKLQARGYLSDAI--HGGL 277
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
+Q R M +F + LV TD A+RGID ++ V +D P+D YV R+GR
Sbjct: 278 NQNQRDRVMGKFRNGIIE----ILVATDVAARGIDVDDIEAVFNYDLPQDTDYYVHRIGR 333
Query: 629 TARGAGGTGKAFIFVVGKQVSLAQRIMERNRKGHPLHDVPSA 670
T R AG +GKAF FVVGK + + I + + +PSA
Sbjct: 334 TGR-AGKSGKAFSFVVGKDIYKLRDIQKYTKTKIKRDKIPSA 374
>gi|366995463|ref|XP_003677495.1| hypothetical protein NCAS_0G02560 [Naumovozyma castellii CBS 4309]
gi|342303364|emb|CCC71143.1| hypothetical protein NCAS_0G02560 [Naumovozyma castellii CBS 4309]
Length = 556
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 185/387 (47%), Gaps = 32/387 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G DY++ +K + F +P+ IQ +P + G+ I +GSGKTL+Y LP I
Sbjct: 116 TFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIV 175
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + L + P V++LAPT ELA Q+ C R+ V GG +
Sbjct: 176 HINAQPLL----APGDGPIVLVLAPTRELAVQIQKECSKFGHSSR-IRNTCVYGGVPRGQ 230
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L G +++IATPGR + +++ G L + +LDE D + D FE ++ ++
Sbjct: 231 QIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRML-DMGFEPQIRKIVDQ 289
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ + D +V +G S + + LV+ + E
Sbjct: 290 IRPDRQTLMWSATWPKEVKQLASDYLNDPIQVQIGSLELSASHNITQ-LVEVVSEFE--- 345
Query: 508 TPETAFLNKKSALLQLIE---KSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
K+ LL+ +E + SK ++F + TC +V L +E L
Sbjct: 346 --------KRDRLLKHLETASQDQESKILIFASTKRTCDEVTKYL-----REDGWPALAI 392
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H DQ R ++EF + RS +V TD A+RGID G+++V+ +D P + +YV
Sbjct: 393 HGDKDQRERDWVLEEFRSGRSP----IMVATDVAARGIDVKGINYVINYDMPGNIEDYVH 448
Query: 625 RVGRTARGAGGTGKAFIFVVGKQVSLA 651
R+GRT R AG TG A F SL
Sbjct: 449 RIGRTGR-AGATGTAISFFTEGNKSLG 474
>gi|294879077|ref|XP_002768565.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239871175|gb|EER01283.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 629
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 198/438 (45%), Gaps = 66/438 (15%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G ++ SL + P++ Q + P ++EG+S ++ Q+GSGKT+AY+LP++
Sbjct: 43 SFHRFGLDKELLVSLHSSGAVTPTRTQEVCIPAIMEGQSVLVVAQTGSGKTMAYVLPILH 102
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG---GFR 385
RL + L PR VIL PT ELA QV+ R L+ G R + TG G
Sbjct: 103 RLLRSNPDNLY-PLENKPRAVILVPTRELAIQVIKVVRQLTAQGC--REVTSTGLAAGLS 159
Query: 386 QKTQLENLQEGV-DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ L +G DV++ TP R + + +G ++L + ++DE D L D +E +
Sbjct: 160 YVKEARALNQGRGDVVVCTPARLLLHLMKGNVKLGEVTHLVIDEADTLC-DTFYEKEVAD 218
Query: 445 LIS----------SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV---MGPGMHRISPG 491
+IS S+P+ A FV AT + N + P VV + P H P
Sbjct: 219 VISKTFKARGAARSAPLVA---FVGATRTGAVSNFVRTSVPTHVVVNQVVAPDAHMTVPA 275
Query: 492 LE-------EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNKIVTC 542
LE E V G + S+ AL+ +E+ V KT++F N + C
Sbjct: 276 LEQVSWYTVEVFVPMGGRKRSN------------ALVDTLEERQVRGQKTLIFTNTVARC 323
Query: 543 RKVENILKRFDRKETRVRVLPFHAALDQETRLANMKEF--TTSRSKEARLFLVCTDRASR 600
R V +L+ V H + + R F + A+ +VCT+ ASR
Sbjct: 324 RGVAKMLE-----AEGYSVSLLHGEMAFKNRRKEFASFKGASKTGTPAKEIMVCTNLASR 378
Query: 601 GIDFAGVDHVVLFDFPRDPSEYVRRVGRTARGA--------------GGTGKAFIFVVGK 646
G+DF V HVV++DFP ++Y+ RVGRTAR G G+ + K
Sbjct: 379 GLDFDDVGHVVMYDFPYTLADYIHRVGRTARAGWKTITKKRKTFSLPGRAGRVTVLFRKK 438
Query: 647 QVSLAQRIMERNRKGHPL 664
+ + ++I E +R PL
Sbjct: 439 NLPVVRKIQEASRASRPL 456
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 37/377 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L Q S S SP R +IL PT ELA QV N + + P RS VV GG
Sbjct: 78 LLQH------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMSPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E E
Sbjct: 190 IINLLPKQRQNLLFSATFSPEI-KKLAASFQNNPVTI--EVARSNATAENVTQTIYKVDE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN-KIVTCRKVENILKRFDRKETRVRVLP 563
+ K +F+ ++ L Q+ IVF N KI R +L V+
Sbjct: 247 AAKADAVSFIIRQRELKQV---------IVFSNTKIGASRLARTLLAEG------VKASA 291
Query: 564 FHAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYV 623
H Q R+A ++ F + + LV TD A+RG+D A + V+ +D P + +YV
Sbjct: 292 IHGDKTQGERMAALEAFKQGQIE----VLVATDVAARGLDIAELPCVINYDLPYNAEDYV 347
Query: 624 RRVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 348 HRIGRTGR-AGASGDAI 363
>gi|427429668|ref|ZP_18919655.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
gi|425879905|gb|EKV28606.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
Length = 469
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 30/372 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++++L + P+ IQA A P +++G+ + Q+G+GKT A+ LP++QR
Sbjct: 4 FTDLGLNESLLKALAEDGYETPTPIQAKAIPLLLDGRDVLGIAQTGTGKTAAFALPMLQR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K R +IL PT ELA Q+ + +S + + R+ + GG Q
Sbjct: 64 LMDSNRRAGPKGC----RALILTPTRELAVQINDSIKSYGRH-LRHRTACIFGGVGMNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVD+LIATPGR + L+ +G ++ + +LDE D + D F ++ ++
Sbjct: 119 IRALSGGVDLLIATPGRLIDLMNQGYVRFDKVEEFVLDEADRML-DMGFVRDVRKVVDRL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P L +AT+P + + + D KV + P + +E+ ++ + D
Sbjct: 178 PGDRHTLLFSATMPTGVRDLADGLLRDPVKVEVTP-QSTTAERIEQRVLFVNRD------ 230
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPFHAAL 568
+K++AL +I+ + + +VF T + ++++ + + V H
Sbjct: 231 ------DKRAALTHIIDSHGIERVLVFTR---TKHGADKLVRQLE--QDGVGAAAIHGNK 279
Query: 569 DQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVRRVGR 628
Q R A +K+F + K LV TD A+RGID G+ HVV F+ P +P YV R+GR
Sbjct: 280 SQNARQAALKDFRKGKVKA----LVATDIAARGIDIDGLTHVVNFELPNEPESYVHRIGR 335
Query: 629 TARGAGGTGKAF 640
TAR AG +G A
Sbjct: 336 TAR-AGASGMAI 346
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 184/376 (48%), Gaps = 35/376 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L Q S S SP R +IL PT ELA QV N + + P RS VV GG
Sbjct: 78 LLQH------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E +E
Sbjct: 190 IINLLPKQRQNLLFSATFSPEI-KKLAASFQNNPVTI--EVARSNATAENVTQTIYKVEE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKIVTCRKVENILKRFDRKETRVRVLPF 564
+ K +F+ ++ L Q+ IVF N + ++ L V+
Sbjct: 247 AAKADAVSFIIRQRELKQV---------IVFSNTKIGASRLARTL-----VAEGVKASAI 292
Query: 565 HAALDQETRLANMKEFTTSRSKEARLFLVCTDRASRGIDFAGVDHVVLFDFPRDPSEYVR 624
H Q R+A ++ F + + LV TD A+RG+D A + V+ +D P + +YV
Sbjct: 293 HGDKTQSERMAALEAFKQGQIE----VLVATDVAARGLDIAELPCVINYDLPYNAEDYVH 348
Query: 625 RVGRTARGAGGTGKAF 640
R+GRT R AG +G A
Sbjct: 349 RIGRTGR-AGASGDAI 363
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,861,771,255
Number of Sequences: 23463169
Number of extensions: 486282538
Number of successful extensions: 1600582
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24729
Number of HSP's successfully gapped in prelim test: 6964
Number of HSP's that attempted gapping in prelim test: 1493151
Number of HSP's gapped (non-prelim): 47227
length of query: 675
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 525
effective length of database: 8,839,720,017
effective search space: 4640853008925
effective search space used: 4640853008925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)